Query 020439
Match_columns 326
No_of_seqs 224 out of 1483
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 02:22:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02693 IAA-amino acid hydrol 100.0 1.9E-53 4.1E-58 405.3 38.3 319 1-324 1-319 (437)
2 PLN02280 IAA-amino acid hydrol 100.0 2.7E-51 5.8E-56 393.1 38.4 277 48-324 95-371 (478)
3 TIGR01891 amidohydrolases amid 100.0 1.6E-48 3.5E-53 365.0 33.0 273 53-325 2-276 (363)
4 PRK06915 acetylornithine deace 100.0 4.1E-47 9E-52 362.3 32.2 273 34-318 3-313 (422)
5 PRK08588 succinyl-diaminopimel 100.0 5.8E-47 1.3E-51 356.3 29.8 266 50-324 2-281 (377)
6 COG1473 AbgB Metal-dependent a 100.0 1.2E-45 2.7E-50 342.1 33.2 284 39-325 4-290 (392)
7 PRK13013 succinyl-diaminopimel 100.0 4.6E-45 1E-49 348.7 31.6 277 37-324 3-327 (427)
8 PRK06837 acetylornithine deace 100.0 3.3E-44 7.1E-49 342.6 32.0 273 34-318 6-318 (427)
9 PRK06133 glutamate carboxypept 100.0 6.3E-44 1.4E-48 338.8 32.9 275 35-325 24-312 (410)
10 PRK07338 hypothetical protein; 100.0 4.4E-44 9.6E-49 339.4 31.4 274 36-325 5-306 (402)
11 PRK05111 acetylornithine deace 100.0 5.4E-44 1.2E-48 336.8 31.0 263 50-325 5-294 (383)
12 PRK13004 peptidase; Reviewed 100.0 7.9E-44 1.7E-48 337.3 30.8 265 36-312 3-279 (399)
13 TIGR03526 selenium_YgeY putati 100.0 1.2E-43 2.7E-48 335.5 30.9 266 37-314 2-279 (395)
14 TIGR01910 DapE-ArgE acetylorni 100.0 2.6E-44 5.7E-49 338.0 25.9 265 54-325 2-291 (375)
15 PRK13983 diaminopimelate amino 100.0 8.9E-44 1.9E-48 337.1 29.3 271 50-325 5-309 (400)
16 PRK07522 acetylornithine deace 100.0 1.2E-43 2.7E-48 334.5 28.9 265 50-325 4-297 (385)
17 TIGR01892 AcOrn-deacetyl acety 100.0 2E-43 4.4E-48 330.6 29.5 260 54-325 1-282 (364)
18 TIGR03320 ygeY M20/DapE family 100.0 2.4E-43 5.3E-48 333.5 30.2 266 37-314 2-279 (395)
19 PRK08596 acetylornithine deace 100.0 5.6E-43 1.2E-47 333.5 31.8 268 37-317 2-303 (421)
20 PRK13009 succinyl-diaminopimel 100.0 1.6E-42 3.5E-47 325.8 30.3 261 50-314 2-277 (375)
21 TIGR01880 Ac-peptdase-euk N-ac 100.0 1.9E-42 4.1E-47 328.0 29.7 271 49-325 8-304 (400)
22 TIGR01900 dapE-gram_pos succin 100.0 1.3E-42 2.8E-47 325.8 27.6 250 55-312 1-277 (373)
23 PRK08201 hypothetical protein; 100.0 1.9E-42 4.2E-47 333.1 28.7 281 37-324 3-358 (456)
24 TIGR01246 dapE_proteo succinyl 100.0 7.2E-42 1.6E-46 320.9 28.9 258 53-314 2-274 (370)
25 PRK06446 hypothetical protein; 100.0 4.1E-42 8.9E-47 328.9 27.0 261 50-315 2-331 (436)
26 PRK07907 hypothetical protein; 100.0 2.1E-41 4.6E-46 325.2 29.6 271 36-315 6-342 (449)
27 PRK09133 hypothetical protein; 100.0 1.3E-41 2.9E-46 328.5 28.3 259 50-314 37-366 (472)
28 PRK13007 succinyl-diaminopimel 100.0 3.1E-41 6.6E-46 314.6 29.0 251 48-315 5-266 (352)
29 PRK08651 succinyl-diaminopimel 100.0 3E-41 6.4E-46 319.3 29.4 260 50-324 6-298 (394)
30 PRK07473 carboxypeptidase; Pro 100.0 1.9E-40 4.1E-45 311.4 30.5 259 50-325 11-284 (376)
31 PRK09104 hypothetical protein; 100.0 1E-40 2.2E-45 321.8 28.9 275 36-315 5-358 (464)
32 PRK08262 hypothetical protein; 100.0 4.9E-41 1.1E-45 325.8 25.3 261 50-315 44-380 (486)
33 PRK08737 acetylornithine deace 100.0 2.3E-40 5.1E-45 309.2 27.9 241 50-314 6-267 (364)
34 PRK00466 acetyl-lysine deacety 100.0 6E-40 1.3E-44 305.2 27.4 236 50-314 10-249 (346)
35 PRK04443 acetyl-lysine deacety 100.0 9.2E-40 2E-44 304.1 28.2 241 50-313 6-253 (348)
36 PRK08652 acetylornithine deace 100.0 7.3E-40 1.6E-44 304.6 27.5 249 50-325 2-256 (347)
37 PRK07906 hypothetical protein; 100.0 4.1E-40 8.8E-45 314.5 26.3 257 53-312 2-321 (426)
38 PRK07079 hypothetical protein; 100.0 3.2E-39 7E-44 311.6 28.4 274 34-315 5-353 (469)
39 TIGR01883 PepT-like peptidase 100.0 4.8E-39 1E-43 300.8 28.1 256 52-324 2-273 (361)
40 PRK06156 hypothetical protein; 100.0 2.7E-38 5.9E-43 308.0 31.5 305 3-325 5-425 (520)
41 TIGR01886 dipeptidase dipeptid 100.0 2.1E-38 4.6E-43 305.1 28.0 263 39-314 4-369 (466)
42 PRK13381 peptidase T; Provisio 100.0 6.3E-38 1.4E-42 297.4 29.1 258 51-324 2-310 (404)
43 PRK07205 hypothetical protein; 100.0 5.3E-38 1.1E-42 301.3 28.1 258 50-314 11-346 (444)
44 COG0624 ArgE Acetylornithine d 100.0 7.7E-38 1.7E-42 297.3 28.7 267 50-324 13-314 (409)
45 PRK07318 dipeptidase PepV; Rev 100.0 1.1E-37 2.3E-42 300.7 28.3 265 38-314 4-369 (466)
46 PRK12892 allantoate amidohydro 100.0 1.1E-36 2.5E-41 289.6 29.3 256 50-325 10-321 (412)
47 PRK05469 peptidase T; Provisio 100.0 2.2E-36 4.8E-41 287.2 29.2 259 50-324 2-312 (408)
48 PRK12893 allantoate amidohydro 100.0 2E-36 4.4E-41 287.9 28.8 256 50-325 10-320 (412)
49 TIGR01902 dapE-lys-deAc N-acet 100.0 1.4E-36 2.9E-41 281.6 25.6 231 55-310 2-236 (336)
50 PRK09290 allantoate amidohydro 100.0 3.6E-36 7.9E-41 286.1 28.9 254 50-325 7-321 (413)
51 TIGR01882 peptidase-T peptidas 100.0 3.4E-36 7.3E-41 285.8 25.9 256 50-320 3-309 (410)
52 PRK12891 allantoate amidohydro 100.0 4.1E-35 8.8E-40 278.8 29.6 255 51-325 11-320 (414)
53 TIGR01887 dipeptidaselike dipe 100.0 7.6E-35 1.6E-39 278.6 28.0 251 50-311 2-353 (447)
54 PRK15026 aminoacyl-histidine d 100.0 1.2E-34 2.7E-39 278.8 29.5 247 50-316 10-291 (485)
55 PRK12890 allantoate amidohydro 100.0 2E-34 4.4E-39 274.2 29.6 254 50-325 9-322 (414)
56 TIGR01893 aa-his-dipept aminoa 100.0 5.4E-34 1.2E-38 275.6 28.4 259 50-325 4-296 (477)
57 KOG2275 Aminoacylase ACY1 and 100.0 8.9E-34 1.9E-38 255.9 26.1 261 50-314 25-313 (420)
58 TIGR01879 hydantase amidase, h 100.0 4.4E-33 9.6E-38 263.9 29.2 242 64-325 25-313 (401)
59 TIGR03176 AllC allantoate amid 100.0 4E-31 8.8E-36 250.3 29.5 256 50-325 3-314 (406)
60 PRK13799 unknown domain/N-carb 100.0 1.4E-30 2.9E-35 256.6 29.8 261 46-325 177-499 (591)
61 PRK13590 putative bifunctional 100.0 2.2E-30 4.8E-35 255.3 31.1 258 47-325 178-497 (591)
62 PRK08554 peptidase; Reviewed 100.0 1.2E-30 2.6E-35 249.2 25.4 252 51-315 2-339 (438)
63 KOG2276 Metalloexopeptidases [ 100.0 2E-29 4.3E-34 225.7 22.7 281 36-321 4-370 (473)
64 COG4187 RocB Arginine degradat 99.8 1.1E-18 2.3E-23 158.5 18.0 263 50-316 8-326 (553)
65 PF07687 M20_dimer: Peptidase 99.8 3.3E-19 7.2E-24 138.3 12.2 105 215-319 2-111 (111)
66 PRK10199 alkaline phosphatase 99.8 9.6E-17 2.1E-21 146.1 19.6 129 52-185 37-188 (346)
67 COG2195 PepD Di- and tripeptid 99.7 1.2E-16 2.6E-21 148.9 13.6 257 50-320 5-314 (414)
68 TIGR03106 trio_M42_hydro hydro 99.6 7.8E-15 1.7E-19 135.3 14.5 129 50-179 3-223 (343)
69 PF01546 Peptidase_M20: Peptid 99.6 7.9E-15 1.7E-19 124.4 8.9 76 109-186 1-85 (189)
70 PRK09961 exoaminopeptidase; Pr 99.5 1.1E-12 2.5E-17 121.3 15.6 142 53-200 3-223 (344)
71 COG1363 FrvX Cellulase M and r 99.4 1.9E-12 4.1E-17 118.4 14.6 145 50-200 2-237 (355)
72 TIGR03107 glu_aminopep glutamy 99.4 4.2E-12 9.2E-17 117.2 15.3 141 54-200 2-235 (350)
73 PRK09864 putative peptidase; P 99.4 1.2E-11 2.7E-16 114.0 15.0 139 53-200 3-230 (356)
74 KOG2194 Aminopeptidases of the 98.6 1.4E-07 3E-12 93.9 10.1 134 49-197 56-223 (834)
75 PF04389 Peptidase_M28: Peptid 98.4 1.1E-06 2.4E-11 73.8 7.1 68 107-185 2-73 (179)
76 PF05343 Peptidase_M42: M42 gl 98.3 4.4E-06 9.6E-11 75.7 9.5 63 132-199 125-190 (292)
77 KOG3946 Glutaminyl cyclase [Po 97.9 0.00034 7.3E-09 61.4 13.7 172 1-185 2-200 (338)
78 KOG2526 Predicted aminopeptida 97.0 0.01 2.2E-07 55.2 11.7 115 74-199 165-305 (555)
79 COG2234 Iap Predicted aminopep 96.6 0.006 1.3E-07 58.6 7.5 44 142-187 231-275 (435)
80 KOG2195 Transferrin receptor a 95.8 0.032 6.9E-07 56.3 7.7 77 93-185 338-420 (702)
81 PF05450 Nicastrin: Nicastrin; 94.9 0.12 2.7E-06 45.2 7.6 66 106-184 1-73 (234)
82 PRK00913 multifunctional amino 94.4 0.72 1.6E-05 44.8 12.4 131 40-174 161-309 (483)
83 cd00433 Peptidase_M17 Cytosol 93.9 1.8 3.8E-05 42.1 13.8 129 42-174 146-295 (468)
84 TIGR01893 aa-his-dipept aminoa 93.0 0.26 5.6E-06 48.1 6.7 43 265-313 336-378 (477)
85 PF00883 Peptidase_M17: Cytoso 91.6 2.6 5.6E-05 38.5 10.8 114 53-174 1-140 (311)
86 PTZ00412 leucyl aminopeptidase 90.3 6.9 0.00015 38.5 12.9 126 43-174 205-354 (569)
87 PRK05015 aminopeptidase B; Pro 90.1 9.5 0.00021 36.3 13.3 119 50-174 100-246 (424)
88 KOG2597 Predicted aminopeptida 89.4 4.4 9.6E-05 39.3 10.7 123 50-174 189-330 (513)
89 COG0260 PepB Leucyl aminopepti 81.8 22 0.00049 34.6 11.5 120 48-174 165-308 (485)
90 PF08139 LPAM_1: Prokaryotic m 81.1 1.7 3.7E-05 23.7 2.1 18 3-20 7-24 (25)
91 PRK13883 conjugal transfer pro 79.6 13 0.00029 30.0 7.8 75 3-89 1-82 (151)
92 PRK13835 conjugal transfer pro 79.3 12 0.00026 30.0 7.3 77 3-89 1-87 (145)
93 COG4882 Predicted aminopeptida 75.1 11 0.00024 35.0 6.8 71 94-185 179-259 (486)
94 PF07172 GRP: Glycine rich pro 72.6 1.2 2.6E-05 33.1 0.1 13 1-13 1-13 (95)
95 PRK02256 putative aminopeptida 71.2 7.8 0.00017 37.6 5.2 45 132-180 251-298 (462)
96 PRK15026 aminoacyl-histidine d 64.5 21 0.00045 35.0 6.8 41 267-313 344-384 (485)
97 PRK10866 outer membrane biogen 61.8 39 0.00084 29.7 7.4 62 2-66 3-65 (243)
98 PF09650 PHA_gran_rgn: Putativ 60.4 18 0.00039 26.4 4.2 34 292-325 2-35 (87)
99 PRK14864 putative biofilm stre 59.2 25 0.00055 26.6 4.9 23 66-88 59-81 (104)
100 TIGR01004 PulS_OutS lipoprotei 57.2 58 0.0013 25.5 6.7 77 3-88 6-83 (128)
101 COG4635 HemG Flavodoxin [Energ 54.2 8.8 0.00019 31.4 1.8 34 58-91 3-36 (175)
102 PRK11372 lysozyme inhibitor; P 47.4 22 0.00048 27.1 3.0 20 1-20 1-20 (109)
103 PF03668 ATP_bind_2: P-loop AT 45.8 93 0.002 28.1 7.1 31 267-298 160-190 (284)
104 PRK06156 hypothetical protein; 45.8 49 0.0011 32.6 6.0 26 267-292 239-264 (520)
105 KOG3566 Glycosylphosphatidylin 45.0 3.3E+02 0.0072 27.2 12.1 90 74-185 92-193 (617)
106 PF06675 DUF1177: Protein of u 44.7 54 0.0012 28.9 5.2 85 104-198 30-129 (276)
107 TIGR02610 PHA_gran_rgn putativ 44.0 54 0.0012 24.1 4.5 35 291-325 4-38 (91)
108 PRK15348 type III secretion sy 43.1 21 0.00045 31.6 2.6 21 1-21 1-21 (249)
109 PF04114 Gaa1: Gaa1-like, GPI 40.4 1.4E+02 0.003 29.5 8.0 73 93-186 3-78 (504)
110 PRK02813 putative aminopeptida 39.7 37 0.00081 32.6 4.0 49 69-117 21-88 (428)
111 COG2195 PepD Di- and tripeptid 36.6 49 0.0011 31.7 4.1 68 106-180 62-139 (414)
112 PF14133 DUF4300: Domain of un 35.0 1.4E+02 0.003 26.5 6.4 58 60-119 136-194 (250)
113 PF09716 ETRAMP: Malarial earl 34.6 94 0.002 22.4 4.5 23 1-23 1-23 (84)
114 PF11471 Sugarporin_N: Maltopo 34.4 58 0.0013 21.9 3.1 19 1-19 1-19 (60)
115 PRK05416 glmZ(sRNA)-inactivati 33.0 1.7E+02 0.0036 26.5 6.9 30 268-298 164-193 (288)
116 COG3056 Uncharacterized lipopr 32.2 1.8E+02 0.0039 24.4 6.2 28 71-99 92-119 (204)
117 PF10880 DUF2673: Protein of u 30.3 1E+02 0.0022 20.3 3.6 21 3-23 1-21 (65)
118 PF09940 DUF2172: Domain of un 29.0 2.1E+02 0.0045 27.0 6.8 89 76-186 95-188 (386)
119 PTZ00371 aspartyl aminopeptida 29.0 91 0.002 30.4 4.7 18 69-86 22-39 (465)
120 PF09981 DUF2218: Uncharacteri 28.0 1E+02 0.0022 22.5 3.8 38 288-325 51-88 (89)
121 PF10309 DUF2414: Protein of u 27.2 90 0.002 21.2 3.1 33 291-326 8-40 (62)
122 PF04456 DUF503: Protein of un 27.1 2E+02 0.0043 21.0 5.2 37 287-323 3-39 (90)
123 PF11153 DUF2931: Protein of u 25.9 61 0.0013 27.8 2.7 19 3-21 1-19 (216)
124 PF06291 Lambda_Bor: Bor prote 25.9 55 0.0012 24.4 2.1 21 3-23 1-21 (97)
125 TIGR01753 flav_short flavodoxi 23.8 89 0.0019 24.1 3.1 28 62-89 5-32 (140)
126 PF05140 ResB: ResB-like famil 23.7 2E+02 0.0044 27.9 6.1 23 69-91 109-131 (464)
127 PRK04330 hypothetical protein; 23.6 2E+02 0.0044 21.0 4.5 39 48-86 10-48 (88)
128 COG1698 Uncharacterized protei 23.4 1.9E+02 0.0041 21.2 4.3 39 49-87 15-53 (93)
129 PF14088 DUF4268: Domain of un 23.4 2.5E+02 0.0054 22.1 5.7 43 284-326 49-91 (140)
130 COG1360 MotB Flagellar motor p 23.1 3.2E+02 0.0069 24.0 6.7 55 107-174 165-219 (244)
131 COG2854 Ttg2D ABC-type transpo 22.4 1.3E+02 0.0028 25.7 3.9 46 1-46 1-47 (202)
132 PRK10449 heat-inducible protei 21.9 91 0.002 24.8 2.8 19 3-21 1-19 (140)
133 PF14395 COOH-NH2_lig: Phage p 21.1 1.3E+02 0.0027 26.8 3.6 37 290-326 50-87 (261)
134 TIGR03042 PS_II_psbQ_bact phot 20.9 1.7E+02 0.0037 23.5 4.1 9 15-23 16-24 (142)
135 PRK13562 acetolactate synthase 20.8 3.3E+02 0.0071 19.7 5.1 43 268-312 27-69 (84)
136 PF11777 DUF3316: Protein of u 20.7 53 0.0012 25.1 1.2 19 3-21 1-19 (114)
137 PRK10081 entericidin B membran 20.7 56 0.0012 20.9 1.0 24 3-26 2-25 (48)
138 PF04028 DUF374: Domain of unk 20.7 1.1E+02 0.0023 21.6 2.6 19 138-156 38-58 (74)
139 PF00258 Flavodoxin_1: Flavodo 20.3 1E+02 0.0023 24.0 2.9 27 63-89 4-30 (143)
No 1
>PLN02693 IAA-amino acid hydrolase
Probab=100.00 E-value=1.9e-53 Score=405.31 Aligned_cols=319 Identities=64% Similarity=1.036 Sum_probs=280.5
Q ss_pred CchhhHHHHHHHHHHhhCCccccCCCCChhhcccccHHHHHhhcCchhHHHHHHHHHHhhhCCCCCcchHHHHHHHHHHH
Q 020439 1 MGSSKLLSLLVTLYLLAPTSISSDVSLSPEELTQIPVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAEL 80 (326)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l 80 (326)
|.++.+|+|-++|+++-.++ -++|+.-..+|....+.+..++.++.++++++.++|.++|++|++|.+++++|.++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lh~~PE~s~~E~~ta~~i~~~L 77 (437)
T PLN02693 1 MALNNFLTFQLLLLLLRVSS---ESPWIAGDVSQIQINLLELAKSPEVFDWMVRIRRKIHENPELGYEEFETSKLIRSEL 77 (437)
T ss_pred CccchhHHHHHHHHHHHhcc---CCCccccchhhhHHHHHHHhhhhhhHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHH
Confidence 67788888888888877665 467776677787777777766633448899999999999999999999999999999
Q ss_pred hhcCCCeeecccCceEEEEECCCCCcEEEEEeecCcccCcCCCCCcccCccCCeeecCCchHHHHHHHHHHHHHHhccCC
Q 020439 81 DQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHE 160 (326)
Q Consensus 81 ~~~G~~~~~~~~~~nvia~~~~~~~~~I~l~~H~DtVp~~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a~~~l~~~~~~ 160 (326)
+++|++++....++|+++.++++++|+|+|.|||||||.++..+|++++..+|++||||+|+++|++++|+++|++.+..
T Consensus 78 ~~~G~~~~~~~~~~~via~~g~~~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~ 157 (437)
T PLN02693 78 DLIGIKYRYPVAITGIIGYIGTGEPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHH 157 (437)
T ss_pred HHCCCeeEecCCCcEEEEEECCCCCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCccc
Confidence 99999987655679999999655568999999999999988788999988899999999999999999999999987666
Q ss_pred CCceEEEEEecCCCCcccHHHHHHccCCccccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCC
Q 020439 161 IKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTI 240 (326)
Q Consensus 161 ~~~~i~~~~~~dEE~~~G~~~l~~~g~~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~ 240 (326)
++++|.|+|++|||++.|++.++++|.+++.|+++++|.++..+.|.+..+.|..++|..+++|+++|+++|++.|+.|+
T Consensus 158 ~~g~V~~if~pdEE~~~Ga~~~i~~g~~~~~~~iig~h~~p~~~~g~~~~~~g~~~~G~~~~~i~v~Gk~aHaa~P~~G~ 237 (437)
T PLN02693 158 LQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSPRTPFGKAASRAGSFMAGAGVFEAVITGKGGHAAIPQHTI 237 (437)
T ss_pred CCceEEEEEEEcccchhhHHHHHHCCCCCCCCEEEEEecCCCCCCeeEEeccCcccccceEEEEEEEcccccCCCCCCCc
Confidence 78999999999999767999999999887788999999888777887777777778899999999999999999999999
Q ss_pred cHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcC
Q 020439 241 DPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSN 320 (326)
Q Consensus 241 NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~ 320 (326)
|||..+++++.+|+++..+..++..+.++|++.|+||...|+||++|++.+|+|+.|.. +++.++|++++++++..++
T Consensus 238 nAI~~aa~~i~~l~~~~~~~~~~~~~~ti~vg~i~GG~~~NvVPd~a~~~~diR~~~~~--~~i~~~i~~i~~~~a~~~g 315 (437)
T PLN02693 238 DPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKVNGGNAFNVIPDSITIGGTLRAFTGF--TQLQQRIKEIITKQAAVHR 315 (437)
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCcEEEEEEEEcCCCCceECCeEEEEEEEecCCHH--HHHHHHHHHHHHHHHHHhC
Confidence 99999999999999886555556677899999999999999999999999999999974 6899999999999888887
Q ss_pred Ceee
Q 020439 321 SFYS 324 (326)
Q Consensus 321 ~~~~ 324 (326)
++++
T Consensus 316 ~~~e 319 (437)
T PLN02693 316 CNAS 319 (437)
T ss_pred CcEE
Confidence 6544
No 2
>PLN02280 IAA-amino acid hydrolase
Probab=100.00 E-value=2.7e-51 Score=393.08 Aligned_cols=277 Identities=59% Similarity=0.989 Sum_probs=250.3
Q ss_pred hHHHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCCCCcEEEEEeecCcccCcCCCCCcc
Q 020439 48 IFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEH 127 (326)
Q Consensus 48 ~~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~I~l~~H~DtVp~~~~~~w~~ 127 (326)
..+.+.++.+.+.++|+++++|.++++||.++|+++|++++....++|++++++++++|+|+|+|||||||.++..+|++
T Consensus 95 ~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~~~~~~~~~~~vva~~g~~~~~~I~l~gh~DaVP~~e~~~w~~ 174 (478)
T PLN02280 95 TVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGIMYRYPLAKTGIRAWIGTGGPPFVAVRADMDALPIQEAVEWEH 174 (478)
T ss_pred HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCeEEecCCCCEEEEEECCCCCCEEEEEEecCCCcccCCCCCCC
Confidence 44788888999999999999999999999999999999988766688999999644458999999999999988778999
Q ss_pred cCccCCeeecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCCcccHHHHHHccCCccccEEEEecccCCCCCcc
Q 020439 128 KSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGT 207 (326)
Q Consensus 128 ~~~~~g~l~GrG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~l~~~g~~~~~d~~i~~~~~~~~~~g~ 207 (326)
+++++|++||||+|+++|++++|+++|++.+.+++++|.|+|++|||.+.|+++++++|.++++|+++++|..+.+|++.
T Consensus 175 ~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g~Ga~~li~~g~~~~~d~~~~~h~~~~~p~g~ 254 (478)
T PLN02280 175 KSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAGNGAKRMIGDGALDDVEAIFAVHVSHEHPTAV 254 (478)
T ss_pred CCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEEecccccccchHHHHHHCCCCcCCCEEEEEecCCCCCCce
Confidence 99999999999999999999999999988776789999999999999667999999999888889999999876678777
Q ss_pred eeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcCCccccccCeE
Q 020439 208 VASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGGGAFNIIPDSV 287 (326)
Q Consensus 208 ~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG~~~n~iP~~~ 287 (326)
+..+.+...+|..+++|+++|+++|++.|+.|+|||..+++++.+++++..+..++....++|++.|+||...|+||++|
T Consensus 255 ig~~~~~~~~G~~~~~I~v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~~~~~~~~tvnvg~I~GG~~~NvIPd~~ 334 (478)
T PLN02280 255 IGSRPGPLLAGCGFFRAVISGKKGRAGSPHHSVDLILAASAAVISLQGIVSREANPLDSQVVSVTTMDGGNNLDMIPDTV 334 (478)
T ss_pred eEecccccccceeEEEEEEECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcccCCCCCcEEEEEEEEccCCCCEeCCEE
Confidence 66666777789999999999999999999999999999999999998876555455567899999999999999999999
Q ss_pred EEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeee
Q 020439 288 TIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYS 324 (326)
Q Consensus 288 ~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 324 (326)
++.+|+|+.|.++.+++.++|++++++.+..++++++
T Consensus 335 ~l~~diR~~~~e~~e~l~~~I~~~~~~~a~~~g~~~~ 371 (478)
T PLN02280 335 VLGGTFRAFSNTSFYQLLKRIQEVIVEQAGVFRCSAT 371 (478)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 9999999999999999999999999998888887644
No 3
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=100.00 E-value=1.6e-48 Score=364.98 Aligned_cols=273 Identities=48% Similarity=0.748 Sum_probs=237.3
Q ss_pred HHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeee-cccCceEEEEECCC-CCcEEEEEeecCcccCcCCCCCcccCc
Q 020439 53 VNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKF-PVAVTGVVGYIGTG-QPPFVALRADMDALAMEESVEWEHKSK 130 (326)
Q Consensus 53 i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~-~~~~~nvia~~~~~-~~~~I~l~~H~DtVp~~~~~~w~~~~~ 130 (326)
.+++++|++|||+|++|.++++||.++|+++|++++. .....|++++++++ ++|+|+|+||+||||.++...+||...
T Consensus 2 ~~~~~~L~~ips~s~~E~~~a~~l~~~l~~~g~~~~~~~~~~~~vva~~~~~~~~~~i~l~gH~DtVp~~~~~~~pf~~~ 81 (363)
T TIGR01891 2 TDIRRHLHEHPELSFEEFKTSSLIAEALESLGIEVRRGVGGATGVVATIGGGKPGPVVALRADMDALPIQEQTDLPYKST 81 (363)
T ss_pred hHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEecCCCCcEEEEEEeCCCCCCEEEEEeccCCCCcccccCCCcccC
Confidence 5789999999999999999999999999999999986 44568999999764 458999999999999876545667655
Q ss_pred cCCeeecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCCcccHHHHHHccCCccccEEEEecccCCCCCcceee
Q 020439 131 VPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVAS 210 (326)
Q Consensus 131 ~~g~l~GrG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~l~~~g~~~~~d~~i~~~~~~~~~~g~~~~ 210 (326)
+||++||||+|++++++++|++.|++.+..++++|.|+|++|||.+.|++++++++.+++.|++++.++.+..+.+.+..
T Consensus 82 ~~g~l~g~G~~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~~~~~~~d~~i~~e~~~~~~~~~~~~ 161 (363)
T TIGR01891 82 NPGVMHACGHDLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGGGGATKMIEDGVLDDVDAILGLHPDPSIPAGTVGL 161 (363)
T ss_pred CCCceecCcCHHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCcchHHHHHHCCCCCCcCEEEEECCCCCCCCeEEEE
Confidence 78999999999999999999999988766778999999999999768999999988777788888887766566666555
Q ss_pred ccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcCCccccccCeEEEE
Q 020439 211 RPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTIG 290 (326)
Q Consensus 211 ~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG~~~n~iP~~~~~~ 290 (326)
..+..++|..+++++++|+++|++.|+.|.||+..+++++.+++++..+...+....++|++.|+||...|+||++|++.
T Consensus 162 ~~~~~~~g~~~~~i~~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~i~gG~~~nvvP~~~~~~ 241 (363)
T TIGR01891 162 RPGTIMAAADKFEVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDPSRPAVVTVGIIEAGGAPNVIPDKASMS 241 (363)
T ss_pred CCCcceeecceEEEEEEeecccccCcccccCHHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEEcCCCCcEECCeeEEE
Confidence 56777889999999999999999999999999999999999998864332233445789999999999999999999999
Q ss_pred EEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeee
Q 020439 291 GTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 291 ~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
+|+|+.|.++.+++.++|++++++++.+++.++++
T Consensus 242 ~diR~~~~~~~e~~~~~i~~~~~~~~~~~~~~ve~ 276 (363)
T TIGR01891 242 GTVRSLDPEVRDQIIDRIERIVEGAAAMYGAKVEL 276 (363)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 99999999999999999999999998887776654
No 4
>PRK06915 acetylornithine deacetylase; Validated
Probab=100.00 E-value=4.1e-47 Score=362.30 Aligned_cols=273 Identities=20% Similarity=0.277 Sum_probs=234.0
Q ss_pred cccHHHHHhhcCchhHHHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeec--------------------ccC
Q 020439 34 QIPVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFP--------------------VAV 93 (326)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--------------------~~~ 93 (326)
+...++.+++++++ +++++++++|++|||+|++|.++++||+++|+++|++++.. +++
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (422)
T PRK06915 3 QLKKQICDYIESHE--EEAVKLLKRLIQEKSVSGDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDS 80 (422)
T ss_pred HHHHHHHHHHHhhH--HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCC
Confidence 44678889999988 99999999999999999999999999999999999998631 246
Q ss_pred ceEEEEECCC-CCcEEEEEeecCcccCcCCCCCcc---cC-ccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceE
Q 020439 94 TGVVGYIGTG-QPPFVALRADMDALAMEESVEWEH---KS-KVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTI 165 (326)
Q Consensus 94 ~nvia~~~~~-~~~~I~l~~H~DtVp~~~~~~w~~---~~-~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i 165 (326)
+|+++++++. ++|+|+|+|||||||+++.+.|++ .. ++||++||||+ ||+++++|.|+++|++.+.+++++|
T Consensus 81 ~nlia~~~g~~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v 160 (422)
T PRK06915 81 PNIVATLKGSGGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDV 160 (422)
T ss_pred ceEEEEEcCCCCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcE
Confidence 8999999653 458999999999999988888954 33 46999999997 8999999999999998877788999
Q ss_pred EEEEecCCC-CcccHHHHHHccCCccccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHH
Q 020439 166 VLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIV 244 (326)
Q Consensus 166 ~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~ 244 (326)
.|++++||| ++.|+..++.+++ ..|+++. .+|++.. ...+++|..+++|+++|+++|+|.|+.|.||+.
T Consensus 161 ~~~~~~dEE~g~~G~~~~~~~~~--~~d~~i~-----~ep~~~~---i~~~~~G~~~~~i~v~G~~~H~s~p~~g~nAi~ 230 (422)
T PRK06915 161 IFQSVIEEESGGAGTLAAILRGY--KADGAII-----PEPTNMK---FFPKQQGSMWFRLHVKGKAAHGGTRYEGVSAIE 230 (422)
T ss_pred EEEEecccccCCcchHHHHhcCc--CCCEEEE-----CCCCCcc---ceeecccEEEEEEEEEeeccccCCCCcCcCHHH
Confidence 999999999 6789888888764 4687775 2355532 235679999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhcc----cCCC-----CCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHH
Q 020439 245 AASNVIVSLQHLVSRE----ADPL-----DSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLI 315 (326)
Q Consensus 245 ~~~~~i~~l~~~~~~~----~~~~-----~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~ 315 (326)
.+++++..|+++.... ..+. .+.++|++.|+||...|+||++|++.+|+|+.|.++.+++.++|++.++++
T Consensus 231 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~nvvP~~a~~~~d~R~~p~~~~~~v~~~i~~~l~~~ 310 (422)
T PRK06915 231 KSMFVIDHLRKLEEKRNDRITDPLYKGIPIPIPINIGKIEGGSWPSSVPDSVILEGRCGIAPNETIEAAKEEFENWIAEL 310 (422)
T ss_pred HHHHHHHHHHHHHHHhccccCCCcccCCCCCceEeEEEeeCCCCCCccCcEEEEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 9999999998875321 1121 245899999999999999999999999999999999999999999999987
Q ss_pred HHH
Q 020439 316 VAN 318 (326)
Q Consensus 316 ~~~ 318 (326)
+..
T Consensus 311 ~~~ 313 (422)
T PRK06915 311 NDV 313 (422)
T ss_pred hcc
Confidence 654
No 5
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=5.8e-47 Score=356.26 Aligned_cols=266 Identities=21% Similarity=0.261 Sum_probs=229.1
Q ss_pred HHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeec---ccCceEEEEECCCCCcEEEEEeecCcccCcCCCCCc
Q 020439 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFP---VAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWE 126 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~---~~~~nvia~~~~~~~~~I~l~~H~DtVp~~~~~~w~ 126 (326)
+++++++++|+++||+|++|.++++||.++|+++||+++.. ++++|+++++++++ |+|+|+||+||||+++.+.|+
T Consensus 2 ~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~g~~~-~~il~~~H~DtVp~~~~~~w~ 80 (377)
T PRK08588 2 EEKIQILADIVKINSVNDNEIEVANYLQDLFAKHGIESKIVKVNDGRANLVAEIGSGS-PVLALSGHMDVVAAGDVDKWT 80 (377)
T ss_pred hHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCceEEEecCCCCceEEEEeCCCC-ceEEEEeeecccCCCCcccCc
Confidence 67899999999999999999999999999999999998753 45689999996544 899999999999998777896
Q ss_pred cc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccccEEEEec
Q 020439 127 HK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLH 198 (326)
Q Consensus 127 ~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~ 198 (326)
++ .++||++||||+ |++++++|.|+++|++.+..++++|.|+|++||| ++.|+++++++++++++|+++..
T Consensus 81 ~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~~G~~~~~~~~~~~~~d~~i~~- 159 (377)
T PRK08588 81 YDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEVGELGAKQLTEKGYADDLDALIIG- 159 (377)
T ss_pred CCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEEEcccccCchhHHHHHhcCccCCCCEEEEe-
Confidence 54 367899999997 8999999999999998887888999999999999 66899999999887778877653
Q ss_pred ccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhcc---cCCCCCceEEEEEEE
Q 020439 199 VSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSRE---ADPLDSQVLTVAKFE 275 (326)
Q Consensus 199 ~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~---~~~~~~~t~~i~~i~ 275 (326)
+|++.. ...+++|..+++|+++|+++|+|.|+.|.|||..+++++.+++++..+. .+..+..++|++.|+
T Consensus 160 ----ep~~~~---i~~~~~G~~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~t~~v~~i~ 232 (377)
T PRK08588 160 ----EPSGHG---IVYAHKGSMDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQKEYFDSIKKHNPYLGGLTHVVTIIN 232 (377)
T ss_pred ----cCCCce---eEEEEEEEEEEEEEEEeechhccCCccccCHHHHHHHHHHHHHHHhhhhcccCccCCCCceeeeEEe
Confidence 233221 1235689999999999999999999999999999999999998764322 123456899999999
Q ss_pred cCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeee
Q 020439 276 GGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYS 324 (326)
Q Consensus 276 gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 324 (326)
||...|+||++|++++|+|+.|.++.+++.++|++++++.+..++++++
T Consensus 233 gG~~~nvip~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~ 281 (377)
T PRK08588 233 GGEQVNSVPDEAELEFNIRTIPEYDNDQVISLLQEIINEVNQNGAAQLS 281 (377)
T ss_pred CCCcCCcCCCeEEEEEEeccCCCCCHHHHHHHHHHHHHHHhhccCCceE
Confidence 9999999999999999999999999999999999999998766654444
No 6
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=100.00 E-value=1.2e-45 Score=342.10 Aligned_cols=284 Identities=47% Similarity=0.737 Sum_probs=263.6
Q ss_pred HHHhhcCchhHHHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeeccc-CceEEEEECCC-CCcEEEEEeecCc
Q 020439 39 FLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVA-VTGVVGYIGTG-QPPFVALRADMDA 116 (326)
Q Consensus 39 ~~~~~~~~~~~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~-~~nvia~~~~~-~~~~I~l~~H~Dt 116 (326)
+.+++ . +.++++++.|+|.++|+.+++|.++++||.++|+++|+++....+ ++.+++.++++ ++|+|+|.+.||.
T Consensus 4 ~~~~~-~--~~~~l~~~rr~lH~~PEL~f~E~~Ta~~i~~~L~~~g~~~~~~~~~~TGvva~~~~g~~g~tIalRAD~DA 80 (392)
T COG1473 4 ILDEI-E--LKDELIEWRRDLHEHPELGFEEYRTAAYIAEKLEELGFEVVEVGGGKTGVVATLKGGKPGPTIALRADMDA 80 (392)
T ss_pred HHHHH-h--hhHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHcCCeeEeccCCceEEEEEEcCCCCCCEEEEEeeccc
Confidence 44444 3 349999999999999999999999999999999999999544433 68999999765 5579999999999
Q ss_pred ccCcCCCCCcccCccCCeeecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCCcccHHHHHHccCCcc-ccEEE
Q 020439 117 LAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAGALEN-VEAIF 195 (326)
Q Consensus 117 Vp~~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~l~~~g~~~~-~d~~i 195 (326)
+|..+..+++|.+..+|++|+||++++.+++|.+++.|++...+++++|.|+|++.||++.|++.++++|.+++ +|+++
T Consensus 81 LPi~E~t~~~~~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~Ga~~mi~~G~~~~~vD~v~ 160 (392)
T COG1473 81 LPIQEETGLPFASKNPGVMHACGHDGHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGGGAKAMIEDGVFDDFVDAVF 160 (392)
T ss_pred CccccccCCCcccCCCCCcccCCchHHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccccHHHHHhcCCccccccEEE
Confidence 99999999999999999999999999999999999999987668999999999999997669999999999998 99999
Q ss_pred EecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEE
Q 020439 196 GLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFE 275 (326)
Q Consensus 196 ~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~ 275 (326)
++|+.++.|.|.+.++.|....+...++++++|+++|++.|+.++||+..++.++..|+.+..+..+|.++..++++.++
T Consensus 161 g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p~~~~vv~vg~~~ 240 (392)
T COG1473 161 GLHPGPGLPVGTVALRPGALMAAADEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPLDSAVVTVGKIE 240 (392)
T ss_pred EecCCCCCCCceEEeecccceeecceEEEEEEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCCccCeEEEEEEec
Confidence 99998877889998899988889999999999999999999999999999999999999998888888888999999999
Q ss_pred cCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeee
Q 020439 276 GGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 276 gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
||.+.|+||+++++..++|....+..+.+.++|+++++.++..+++++||
T Consensus 241 aG~a~NVIpd~A~l~gtvR~~~~~~~~~~~~~i~~ia~g~a~~~g~~~ei 290 (392)
T COG1473 241 AGTAANVIPDSAELEGTIRTFSDEVREKLEARIERIAKGIAAAYGAEAEI 290 (392)
T ss_pred CCCcCCcCCCeeEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 99999999999999999999999999999999999999999999999886
No 7
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=4.6e-45 Score=348.75 Aligned_cols=277 Identities=16% Similarity=0.181 Sum_probs=226.4
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhhhCCCCC--c-chHHHHHHHHHHHhhcCCCeeecc-----------cCceEEEEECC
Q 020439 37 VKFLDFAKKPEIFYWMVNIRRKIHENPELG--F-QEFETSKLIRAELDQMGIPYKFPV-----------AVTGVVGYIGT 102 (326)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~~l~~l~~ips~s--~-~e~~~~~~l~~~l~~~G~~~~~~~-----------~~~nvia~~~~ 102 (326)
.++.+++++++ +++++++++|++|||++ + +|+++++||.++|+++||+++... .++|+++++++
T Consensus 3 ~~~~~~~~~~~--~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g 80 (427)
T PRK13013 3 DRLFAAIEARR--DDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQG 80 (427)
T ss_pred HHHHHHHHHhH--HHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecC
Confidence 35777888877 99999999999999987 3 568999999999999999987532 14699999955
Q ss_pred C-CCcEEEEEeecCcccCcCCCCCc---cc-CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q 020439 103 G-QPPFVALRADMDALAMEESVEWE---HK-SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE 174 (326)
Q Consensus 103 ~-~~~~I~l~~H~DtVp~~~~~~w~---~~-~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 174 (326)
+ ++|+|+|+||+||||+++ .|+ |. .++||+|||||+ ||+++++|+|+++|++.+.+++++|.|+|++|||
T Consensus 81 ~~~~~~i~l~gH~DvVp~~~--~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE 158 (427)
T PRK13013 81 ARDGDCVHFNSHHDVVEVGH--GWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISGTADEE 158 (427)
T ss_pred CCCCCEEEEEeccccCCCCC--CCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEEEeccc
Confidence 3 458999999999999874 585 43 356899999997 8999999999999998877788999999999999
Q ss_pred -Cc-ccHHHHHHccCCc--cccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHH
Q 020439 175 -GG-GGAKKMLDAGALE--NVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVI 250 (326)
Q Consensus 175 -~~-~G~~~l~~~g~~~--~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i 250 (326)
++ .|.+++++++.++ ..|+++.. +|++... ...+++|..+++|+++|+++|++.|+.|.|||..++++|
T Consensus 159 ~g~~~g~~~l~~~~~~~~~~~d~~i~~-----ep~~~~~--i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~l 231 (427)
T PRK13013 159 SGGFGGVAYLAEQGRFSPDRVQHVIIP-----EPLNKDR--ICLGHRGVWWAEVETRGRIAHGSMPFLGDSAIRHMGAVL 231 (427)
T ss_pred cCChhHHHHHHhcCCccccCCCEEEEe-----cCCCCCc--eEEeeeeEEEEEEEEEccccccCCCCcCcCHHHHHHHHH
Confidence 55 4788888888765 45777753 2343211 134578999999999999999999999999999999999
Q ss_pred HHHhHhhhcc-----c-CC-----CCCceEEEEEEEcCCcc----------ccccCeEEEEEEEEccChhhHHHHHHHHH
Q 020439 251 VSLQHLVSRE-----A-DP-----LDSQVLTVAKFEGGGAF----------NIIPDSVTIGGTFRAFSKESIIQLKQRIE 309 (326)
Q Consensus 251 ~~l~~~~~~~-----~-~~-----~~~~t~~i~~i~gG~~~----------n~iP~~~~~~~diR~~~~~~~~~~~~~i~ 309 (326)
.+|+++..+. . .+ ....++|++.|+||... |+||++|++++|+|++|.++.+++.++|+
T Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~~~~~~~~~~~n~IPd~a~~~idiR~~p~~~~~~v~~~i~ 311 (427)
T PRK13013 232 AEIEERLFPLLATRRTAMPVVPEGARQSTLNINSIHGGEPEQDPDYTGLPAPCVADRCRIVIDRRFLIEEDLDEVKAEIT 311 (427)
T ss_pred HHHHHHhhhhhhcccccCCCCCcccCCCceeeeEEeCCCccccccccccccccCCceEEEEEEEEeCCCCCHHHHHHHHH
Confidence 9997653110 0 01 13579999999999766 99999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCeee
Q 020439 310 EVHLLIVANS-NSFYS 324 (326)
Q Consensus 310 ~~~~~~~~~~-~~~~~ 324 (326)
++++++++.. +.+++
T Consensus 312 ~~i~~~~~~~~~~~~~ 327 (427)
T PRK13013 312 ALLERLKRARPGFAYE 327 (427)
T ss_pred HHHHHHHhhCCCceeE
Confidence 9999887544 34443
No 8
>PRK06837 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=3.3e-44 Score=342.58 Aligned_cols=273 Identities=17% Similarity=0.154 Sum_probs=231.3
Q ss_pred cccHHHHHhhcCchhHHHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeec--------------------ccC
Q 020439 34 QIPVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFP--------------------VAV 93 (326)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--------------------~~~ 93 (326)
...+++.++++.++ +++++++++|++|||+|++|.++++||.++|+++|++++.. +++
T Consensus 6 ~~~~~~~~~i~~~~--~~~~~~l~~li~ipS~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (427)
T PRK06837 6 DLTQRILAAVDAGF--DAQVAFTQDLVRFPSTRGAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSGA 83 (427)
T ss_pred HHHHHHHHHHHhhh--HHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCCC
Confidence 36677889999987 99999999999999999999999999999999999998641 246
Q ss_pred ceEEEEECCC--CCcEEEEEeecCcccCcCCCCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCce
Q 020439 94 TGVVGYIGTG--QPPFVALRADMDALAMEESVEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGT 164 (326)
Q Consensus 94 ~nvia~~~~~--~~~~I~l~~H~DtVp~~~~~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~ 164 (326)
+|+++++++. .+|+|+|+|||||||+++.+.|+++ .++||++||||+ ||+++++|+|++++++.+..++++
T Consensus 84 ~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~~ 163 (427)
T PRK06837 84 PNVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAAR 163 (427)
T ss_pred ceEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCc
Confidence 8999999653 3589999999999999877789654 356899999998 899999999999999888788999
Q ss_pred EEEEEecCCC-CcccHHHHHHccCCccccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHH
Q 020439 165 IVLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPI 243 (326)
Q Consensus 165 i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi 243 (326)
|.|+|++||| ++.|+..++.+++ ..|+++.. +|++.. ...+++|..+++|+++|+++|+|.|+.|.||+
T Consensus 164 i~~~~~~dEE~~g~g~~~~~~~~~--~~d~~iv~-----ep~~~~---i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi 233 (427)
T PRK06837 164 VHFQSVIEEESTGNGALSTLQRGY--RADACLIP-----EPTGEK---LVRAQVGVIWFRLRVRGAPVHVREAGTGANAI 233 (427)
T ss_pred EEEEEEeccccCCHhHHHHHhcCc--CCCEEEEc-----CCCCCc---cccccceeEEEEEEEEeeccccCCcccCcCHH
Confidence 9999999999 6779888888765 46777652 244321 23456899999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhcc-----cCC-----CCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHH
Q 020439 244 VAASNVIVSLQHLVSRE-----ADP-----LDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHL 313 (326)
Q Consensus 244 ~~~~~~i~~l~~~~~~~-----~~~-----~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 313 (326)
..+++++.+|+++.... ..+ ..+.++|++.|+||...|+||++|++.+++|+.|+++++++.++|++.++
T Consensus 234 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~t~ni~~i~gG~~~nvVP~~~~~~~~ir~~p~~~~~~v~~~i~~~~~ 313 (427)
T PRK06837 234 DAAYHLIQALRELEAEWNARKASDPHFEDVPHPINFNVGIIKGGDWASSVPAWCDLDCRIAIYPGVTAADAQAEIEACLA 313 (427)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCcccCCCCceeEeeeeEeCCCCCCccCCEEEEEEEEeECCCCCHHHHHHHHHHHHH
Confidence 99999999998764211 011 12458999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q 020439 314 LIVAN 318 (326)
Q Consensus 314 ~~~~~ 318 (326)
+.+.+
T Consensus 314 ~~~~~ 318 (427)
T PRK06837 314 AAARD 318 (427)
T ss_pred HHHhc
Confidence 86544
No 9
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=100.00 E-value=6.3e-44 Score=338.83 Aligned_cols=275 Identities=17% Similarity=0.197 Sum_probs=229.2
Q ss_pred ccHHHHHhhcCchhHHHHHHHHHHhhhCCCCCcch---HHHHHHHHHHHhhcCCCeeecc----cCceEEEEECCCCCcE
Q 020439 35 IPVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQE---FETSKLIRAELDQMGIPYKFPV----AVTGVVGYIGTGQPPF 107 (326)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~~e---~~~~~~l~~~l~~~G~~~~~~~----~~~nvia~~~~~~~~~ 107 (326)
..+++.+++++++ +++++++++|++|||+|+++ .++++||.++|+++|++++... .++|+++++++.++|+
T Consensus 24 ~~~~~~~~~~~~~--~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~lia~~~g~~~~~ 101 (410)
T PRK06133 24 PDAELLAAAQQEQ--PAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTPPSAGDMVVATFKGTGKRR 101 (410)
T ss_pred hHHHHHHHHHHhH--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEEEECCCCCce
Confidence 4566888999988 99999999999999999875 4899999999999999987632 3579999996544589
Q ss_pred EEEEeecCcccCcCCCCCccc--CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHH
Q 020439 108 VALRADMDALAMEESVEWEHK--SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKK 181 (326)
Q Consensus 108 I~l~~H~DtVp~~~~~~w~~~--~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~ 181 (326)
|+|+||+||||.+. .|.++ ..++|++||||+ |++++++|+|++.|++.+.+++++|.|+|++||| ++.|+++
T Consensus 102 ill~~H~D~Vp~~~--~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~ 179 (410)
T PRK06133 102 IMLIAHMDTVYLPG--MLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFNPDEETGSPGSRE 179 (410)
T ss_pred EEEEeecCccCCCC--ccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcccCCccHHH
Confidence 99999999999864 47543 357899999996 8999999999999998877778999999999999 6689999
Q ss_pred HHHccCCccccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcC-CCCCCCcHHHHHHHHHHHHhHhhhcc
Q 020439 182 MLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAA-IPQHTIDPIVAASNVIVSLQHLVSRE 260 (326)
Q Consensus 182 l~~~g~~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss-~p~~g~NAi~~~~~~i~~l~~~~~~~ 260 (326)
++++.. .+.|+++..+ ++.+.+.+. .+++|..+++++++|+++|++ .|+.|.||+..+++++..|+++.
T Consensus 180 ~~~~~~-~~~d~~i~~e--p~~~~~~v~----~~~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~~~~--- 249 (410)
T PRK06133 180 LIAELA-AQHDVVFSCE--PGRAKDALT----LATSGIATALLEVKGKASHAGAAPELGRNALYELAHQLLQLRDLG--- 249 (410)
T ss_pred HHHHHh-ccCCEEEEeC--CCCCCCCEE----EeccceEEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHHhcc---
Confidence 998743 3578888753 333323333 346899999999999999986 79999999999999999998763
Q ss_pred cCCCCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeee
Q 020439 261 ADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 261 ~~~~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
.+....+++++.|+||+..|+||++|++.+|+|+.|.++.+++.++|++++++ +...++++++
T Consensus 250 -~~~~~~t~~~~~i~gG~~~nvIP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~-~~~~~~~~~~ 312 (410)
T PRK06133 250 -DPAKGTTLNWTVAKAGTNRNVIPASASAQADVRYLDPAEFDRLEADLQEKVKN-KLVPDTEVTL 312 (410)
T ss_pred -CCCCCeEEEeeEEECCCCCceeCCccEEEEEEEECCHHHHHHHHHHHHHHHhc-cCCCCeEEEE
Confidence 22345789999999999999999999999999999999999999999999987 3334555443
No 10
>PRK07338 hypothetical protein; Provisional
Probab=100.00 E-value=4.4e-44 Score=339.42 Aligned_cols=274 Identities=18% Similarity=0.210 Sum_probs=228.3
Q ss_pred cHHHHHhhcCchhHHHHHHHHHHhhhCCCCCcch---HHHHHHHHHHHhhcCCCeeecc-----------------cCce
Q 020439 36 PVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQE---FETSKLIRAELDQMGIPYKFPV-----------------AVTG 95 (326)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~~e---~~~~~~l~~~l~~~G~~~~~~~-----------------~~~n 95 (326)
..++.+++++++ ++++++|++|+++||+|+++ .++++||+++|+++|++++..+ ..+|
T Consensus 5 ~~~~~~~~~~~~--~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~n 82 (402)
T PRK07338 5 ERAVLDLIDDRQ--APMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPA 82 (402)
T ss_pred HHHHHHHHhhhH--HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCe
Confidence 456778888887 99999999999999999774 5799999999999999987521 1259
Q ss_pred EEEEECCCCCcEEEEEeecCcccCcCCCCCcccC---ccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEE
Q 020439 96 VVGYIGTGQPPFVALRADMDALAMEESVEWEHKS---KVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVF 169 (326)
Q Consensus 96 via~~~~~~~~~I~l~~H~DtVp~~~~~~w~~~~---~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~ 169 (326)
++++++++.+++|+|+|||||||++. -||.. ++||++||||+ ||+++++|+|+++|++.+.+++++|.|+|
T Consensus 83 l~a~~~~~~~~~lll~gH~DvVp~~~---~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~ 159 (402)
T PRK07338 83 LHVSVRPEAPRQVLLTGHMDTVFPAD---HPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLI 159 (402)
T ss_pred EEEEECCCCCccEEEEeecCccCCCC---CcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 99999654336899999999999863 34542 67899999997 89999999999999887777889999999
Q ss_pred ecCCC-CcccHHHHHHccCCccccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCC-CCCCCcHHHHHH
Q 020439 170 QPAEE-GGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAI-PQHTIDPIVAAS 247 (326)
Q Consensus 170 ~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~-p~~g~NAi~~~~ 247 (326)
++||| ++.|++.+++++. .+.++++.. +|..+.+.+. .+++|..+++|+++|+++|++. |+.|.||+..++
T Consensus 160 ~~dEE~g~~g~~~~~~~~~-~~~~~~i~~--ep~~~~~~v~----~~~kG~~~~~v~v~G~~aHs~~~p~~g~nAi~~~~ 232 (402)
T PRK07338 160 NPDEEIGSPASAPLLAELA-RGKHAALTY--EPALPDGTLA----GARKGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAA 232 (402)
T ss_pred ECCcccCChhhHHHHHHHh-ccCcEEEEe--cCCCCCCcEE----eecceeEEEEEEEEeEcccCCCCcccCccHHHHHH
Confidence 99999 6679999988754 245666654 3332334332 3458999999999999999995 899999999999
Q ss_pred HHHHHHhHhhhcccCCCCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeee
Q 020439 248 NVIVSLQHLVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 248 ~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
+++.+|+++... ....++|++.|+||...|+||++|++.+|+|+.|.++.+++.++|++++++.++.++++++|
T Consensus 233 ~~i~~l~~l~~~----~~~~t~~vg~i~gG~~~nvVP~~a~~~~d~R~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~ 306 (402)
T PRK07338 233 ELALALHALNGQ----RDGVTVNVAKIDGGGPLNVVPDNAVLRFNIRPPTPEDAAWAEAELKKLIAQVNQRHGVSLHL 306 (402)
T ss_pred HHHHHHHhhhcc----CCCcEEEEEEEecCCCCceeccccEEEEEeccCCHHHHHHHHHHHHHHHhccccCCCeEEEE
Confidence 999999876422 23469999999999999999999999999999999999999999999999987777877765
No 11
>PRK05111 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=5.4e-44 Score=336.76 Aligned_cols=263 Identities=17% Similarity=0.254 Sum_probs=220.2
Q ss_pred HHHHHHHHHhhhCCCCCcch-------HHHHHHHHHHHhhcCCCeeec-----ccCceEEEEECCCCCcEEEEEeecCcc
Q 020439 50 YWMVNIRRKIHENPELGFQE-------FETSKLIRAELDQMGIPYKFP-----VAVTGVVGYIGTGQPPFVALRADMDAL 117 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e-------~~~~~~l~~~l~~~G~~~~~~-----~~~~nvia~~~~~~~~~I~l~~H~DtV 117 (326)
+++++++++|++|||+|++| .++++||.++|+++|++++.. .+++|+++++++++ ++|+|+||||||
T Consensus 5 ~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~nvia~~g~~~-~~il~~~H~Dvv 83 (383)
T PRK05111 5 PSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGTRGKFNLLASLGSGE-GGLLLAGHTDTV 83 (383)
T ss_pred hHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCCCCCceEEEEeCCCC-CeEEEEeeecee
Confidence 67999999999999999875 579999999999999998653 24679999995443 689999999999
Q ss_pred cCcCCCCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCc
Q 020439 118 AMEESVEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALE 189 (326)
Q Consensus 118 p~~~~~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~ 189 (326)
|+++ ..|+++ .++||++||||+ ||+++++|+|++.|++. .++++|.|+|++||| ++.|++++++++.+.
T Consensus 84 p~~~-~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~ 160 (383)
T PRK05111 84 PFDE-GRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--KLKKPLYILATADEETSMAGARAFAEATAIR 160 (383)
T ss_pred cCCC-CcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--CCCCCeEEEEEeccccCcccHHHHHhcCCCC
Confidence 9864 568544 356899999996 89999999999999864 467899999999999 668999999887543
Q ss_pred cccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhc----ccCC--
Q 020439 190 NVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSR----EADP-- 263 (326)
Q Consensus 190 ~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~----~~~~-- 263 (326)
.|+++. ++|++.. +..+++|..+++|+++|+++|+|.|+.|.|||..+++++.+++.+... ...+
T Consensus 161 -~d~~i~-----~ep~~~~---~~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~ 231 (383)
T PRK05111 161 -PDCAII-----GEPTSLK---PVRAHKGHMSEAIRITGQSGHSSDPALGVNAIELMHDVIGELLQLRDELQERYHNPAF 231 (383)
T ss_pred -CCEEEE-----cCCCCCc---eeecccceEEEEEEEEeechhccCCccCcCHHHHHHHHHHHHHHHHHHHhccCCCccC
Confidence 466664 2344431 123568999999999999999999999999999999999999876421 1112
Q ss_pred -CCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeee
Q 020439 264 -LDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 264 -~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
...+++|++.|+||...|+||++|++.+|+|+.|.++.+++.++|++.+++.++.++++++|
T Consensus 232 ~~~~~t~~i~~i~gg~~~NvVP~~~~~~~diR~~p~~~~~~v~~~i~~~i~~~~~~~~~~~~~ 294 (383)
T PRK05111 232 TVPYPTLNLGHIHGGDAPNRICGCCELHFDIRPLPGMTLEDLRGLLREALAPVSERWPGRITV 294 (383)
T ss_pred CCCCCceeEeeeecCCcCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 13579999999999999999999999999999999999999999999999998888877665
No 12
>PRK13004 peptidase; Reviewed
Probab=100.00 E-value=7.9e-44 Score=337.27 Aligned_cols=265 Identities=19% Similarity=0.215 Sum_probs=224.3
Q ss_pred cHHHHHhhcCchhHHHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCCCCcEEEEEeecC
Q 020439 36 PVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMD 115 (326)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~I~l~~H~D 115 (326)
..++.+++++++ +++++++++|++|||+|++|.+++++|.++|+++||++...+..+|+++++++++ |+|+|+||+|
T Consensus 3 ~~~~~~~~~~~~--~~~~~~l~~lv~ips~s~~e~~~a~~l~~~l~~~G~~~~~~~~~~n~~a~~~~~~-~~i~~~~H~D 79 (399)
T PRK13004 3 FKLILMLAEKYK--ADMTRFLRDLIRIPSESGDEKRVVKRIKEEMEKVGFDKVEIDPMGNVLGYIGHGK-KLIAFDAHID 79 (399)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCcEEEEcCCCeEEEEECCCC-cEEEEEeccC
Confidence 457888999887 9999999999999999999999999999999999998655555679999987654 8999999999
Q ss_pred cccCcCCCCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-C-cccHHHHHHcc
Q 020439 116 ALAMEESVEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-G-GGGAKKMLDAG 186 (326)
Q Consensus 116 tVp~~~~~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~-~~G~~~l~~~g 186 (326)
|||+++.+.|+++ .++||++||||+ |++++++|+|+++|++.+..++++|.++|++||| + +.|++++++++
T Consensus 80 tVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~g~~~~~~~~~~ 159 (399)
T PRK13004 80 TVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTGTVQEEDCDGLCWRYIIEED 159 (399)
T ss_pred ccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEEEcccccCcchhHHHHHHhc
Confidence 9999877789764 346899999998 8999999999999999887789999999999999 3 46788888875
Q ss_pred CCccccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhc--ccCCC
Q 020439 187 ALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSR--EADPL 264 (326)
Q Consensus 187 ~~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~--~~~~~ 264 (326)
.+ +.|++++.+ |++. ....+++|..+++|+++|+++|++.|+.|.||+..+++++..|+.+... .....
T Consensus 160 ~~-~~d~~i~~e-----~~~~---~i~~~~~G~~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~ 230 (399)
T PRK13004 160 KI-KPDFVVITE-----PTDL---NIYRGQRGRMEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEELNPNLKEDPFL 230 (399)
T ss_pred CC-CCCEEEEcc-----CCCC---ceEEecceEEEEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHhhccccccCCcC
Confidence 44 467777642 2221 1123468999999999999999999999999999999999999877532 21223
Q ss_pred CCceEEEEEEEcC-CccccccCeEEEEEEEEccChhhHHHHHHHHHHHH
Q 020439 265 DSQVLTVAKFEGG-GAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVH 312 (326)
Q Consensus 265 ~~~t~~i~~i~gG-~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~ 312 (326)
+..+++++.|++| ...|+||++|++.+|+|++|.++.+++.++++++.
T Consensus 231 ~~~~~~v~~i~~g~~~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~ 279 (399)
T PRK13004 231 GKGTLTVSDIFSTSPSRCAVPDSCAISIDRRLTVGETWESVLAEIRALP 279 (399)
T ss_pred CCceEEEeeeecCCCCCCccCCEEEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 4568999999876 48999999999999999999999999999999884
No 13
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=100.00 E-value=1.2e-43 Score=335.49 Aligned_cols=266 Identities=18% Similarity=0.202 Sum_probs=222.8
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCCCCcEEEEEeecCc
Q 020439 37 VKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDA 116 (326)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~I~l~~H~Dt 116 (326)
+++.+++++++ +++++++++|++|||+|++|.++++||.++|+++||++...+...|+++.++++ +|+|+|+||+||
T Consensus 2 ~~~~~~~~~~~--~~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~v~~~~g~~-~~~l~l~~H~Dt 78 (395)
T TIGR03526 2 NQIKSEAEKYR--GDMIRFLRDLVAIPSESGDEGRVALRIKQEMEKLGFDKVEIDPMGNVLGYIGHG-PKLIAMDAHIDT 78 (395)
T ss_pred chHHHHHHHHH--HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEEEcCCCcEEEEeCCC-CCEEEEEeeccc
Confidence 46778888887 999999999999999999999999999999999999854333457899998543 389999999999
Q ss_pred ccCcCCCCCcccC----ccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCC--cccHHHHHHccC
Q 020439 117 LAMEESVEWEHKS----KVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEG--GGGAKKMLDAGA 187 (326)
Q Consensus 117 Vp~~~~~~w~~~~----~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~--~~G~~~l~~~g~ 187 (326)
||+++.+.|++++ ++||++||||+ ||+++++|+|++.|++.+..++.++.|++++|||+ +.|++++++++.
T Consensus 79 Vp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~g~~~~~~~~~~~ 158 (395)
T TIGR03526 79 VGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDK 158 (395)
T ss_pred cCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEecccccCCcHhHHHHHhccC
Confidence 9998888897653 46899999995 99999999999999988766788999999999993 456778877654
Q ss_pred CccccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhcc-cCC-CC
Q 020439 188 LENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSRE-ADP-LD 265 (326)
Q Consensus 188 ~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~-~~~-~~ 265 (326)
+ ..|+++.. +|++. . ...+++|..+++|+++|+++|++.|+.|+|||..+++++.+|+.+.... .++ .+
T Consensus 159 ~-~~d~~i~~-----ep~~~-~--i~~g~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~ 229 (395)
T TIGR03526 159 I-KPEFVVIT-----EPTDM-N--IYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLG 229 (395)
T ss_pred C-CCCEEEec-----CCCCc-e--EEEEcceEEEEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHhhhhhcCCcccC
Confidence 4 46777753 34332 1 2345689999999999999999999999999999999999998875321 122 34
Q ss_pred CceEEEEEEEcCC-ccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHH
Q 020439 266 SQVLTVAKFEGGG-AFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLL 314 (326)
Q Consensus 266 ~~t~~i~~i~gG~-~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~ 314 (326)
..++|++.|++|. ..|+||++|++++|+|++|+++.+++.+.|+++++.
T Consensus 230 ~~~~~v~~i~~g~~~~nviP~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~ 279 (395)
T TIGR03526 230 KGTLTVSEIFFSSPSRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAV 279 (395)
T ss_pred ccceeeeeeecCCCCCCccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHh
Confidence 5799999999875 899999999999999999999999999999998764
No 14
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=100.00 E-value=2.6e-44 Score=338.00 Aligned_cols=265 Identities=20% Similarity=0.256 Sum_probs=220.2
Q ss_pred HHHHHhhhCCC---CCcchHHHHHHHHHHHhhcCCCeeecc---cCce----EEEEECC-CCCcEEEEEeecCcccCcCC
Q 020439 54 NIRRKIHENPE---LGFQEFETSKLIRAELDQMGIPYKFPV---AVTG----VVGYIGT-GQPPFVALRADMDALAMEES 122 (326)
Q Consensus 54 ~~l~~l~~ips---~s~~e~~~~~~l~~~l~~~G~~~~~~~---~~~n----via~~~~-~~~~~I~l~~H~DtVp~~~~ 122 (326)
+++++|++||| ++++|.++++||.++|+++|++++... ...| +++.+.+ +.+|+|+|+|||||||.++.
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ill~~H~DtVp~~~~ 81 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNGNEKSLIFNGHYDVVPAGDL 81 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCCCCCEEEEecccccccCCCh
Confidence 67899999999 788999999999999999999987521 2233 5555543 33589999999999999877
Q ss_pred CCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccccEE
Q 020439 123 VEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAI 194 (326)
Q Consensus 123 ~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~ 194 (326)
++|+++ .+++|++||||+ |++++++|+|++.|++.+..++++|.|+|+++|| ++.|++.+++++.+++.|++
T Consensus 82 ~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~~~d~~ 161 (375)
T TIGR01910 82 ELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGEAGTLYLLQRGYFKDADGV 161 (375)
T ss_pred hhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCchhHHHHHHcCCCCCCCEE
Confidence 789654 356899999997 8999999999999998877789999999999999 67899999998877667887
Q ss_pred EEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhccc------CCCCCce
Q 020439 195 FGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA------DPLDSQV 268 (326)
Q Consensus 195 i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~------~~~~~~t 268 (326)
+.. + |++... ...+++|..+++|+++|+++|+|.|+.|.|||..+++++.+|+++..... .....++
T Consensus 162 i~~--~---~~~~~~--v~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t 234 (375)
T TIGR01910 162 LIP--E---PSGGDN--IVIGHKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELEEHIYARNSYGFIPGPIT 234 (375)
T ss_pred EEC--C---CCCCCc--eEEEecceEEEEEEEeeeecccCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccccCCCcc
Confidence 753 2 332111 12356899999999999999999999999999999999999988753211 1124579
Q ss_pred EEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeee
Q 020439 269 LTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 269 ~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
++++.|+||...|+||++|++.+|+|+.|.++.+++.++|++++++.+..++++++|
T Consensus 235 ~~i~~i~gG~~~nviP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 291 (375)
T TIGR01910 235 FNPGVIKGGDWVNSVPDYCEFSIDVRIIPEENLDEVKQIIEDVVKALSKSDGWLYEN 291 (375)
T ss_pred ccceeEECCCCcCcCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhcCcHHhhC
Confidence 999999999999999999999999999999999999999999999987666665543
No 15
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=100.00 E-value=8.9e-44 Score=337.05 Aligned_cols=271 Identities=19% Similarity=0.191 Sum_probs=224.3
Q ss_pred HHHHHHHHHhhhCCCCCc-----chHHHHHHHHHHHhhcCCC-eeecc-------c--CceEEEEECCC-CCcEEEEEee
Q 020439 50 YWMVNIRRKIHENPELGF-----QEFETSKLIRAELDQMGIP-YKFPV-------A--VTGVVGYIGTG-QPPFVALRAD 113 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~-----~e~~~~~~l~~~l~~~G~~-~~~~~-------~--~~nvia~~~~~-~~~~I~l~~H 113 (326)
+++++++++|++|||+|+ +|.++++|+.++|+++||+ ++..+ + ++|++++++++ ++++|+|+||
T Consensus 5 ~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~~~~lll~~H 84 (400)
T PRK13983 5 DEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDGKRTLWIISH 84 (400)
T ss_pred HHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCCCCeEEEEee
Confidence 889999999999999984 4889999999999999998 76521 1 58999999654 3479999999
Q ss_pred cCcccCcCCCCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-Cc-ccHHHHHH
Q 020439 114 MDALAMEESVEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GG-GGAKKMLD 184 (326)
Q Consensus 114 ~DtVp~~~~~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~-~G~~~l~~ 184 (326)
+||||+++.+.|+++ .+++|++||||+ |++++++|+|+++|++.+.+++++|.|+|++||| ++ .|++++++
T Consensus 85 ~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~~~~~~ 164 (400)
T PRK13983 85 MDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETGSKYGIQYLLK 164 (400)
T ss_pred ccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccCCcccHHHHHh
Confidence 999999877789754 346899999996 8999999999999998887899999999999999 55 48999998
Q ss_pred c--cCCccccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhH-hhhcc-
Q 020439 185 A--GALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQH-LVSRE- 260 (326)
Q Consensus 185 ~--g~~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~-~~~~~- 260 (326)
+ +.+.+.|++++ ++.+.|++... ..+++|..+++|+++|+++|+|.|+.|+||+..+++++.++++ +....
T Consensus 165 ~~~~~~~~~d~~i~--~~~~~~~~~~i---~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~ 239 (400)
T PRK13983 165 KHPELFKKDDLILV--PDAGNPDGSFI---EIAEKSILWLKFTVKGKQCHASTPENGINAHRAAADFALELDEALHEKFN 239 (400)
T ss_pred hcccccCCCCEEEE--ecCCCCCCcee---EEeecceEEEEEEEEeEccccCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Confidence 7 55656777775 33345666532 3456899999999999999999999999999999999999987 32211
Q ss_pred -cCC-C--CCceEEEEEEEcC-CccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeee
Q 020439 261 -ADP-L--DSQVLTVAKFEGG-GAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 261 -~~~-~--~~~t~~i~~i~gG-~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
.++ . ...+++++.+.+| ...|+||++|++++|+|++|+++.++++++|++++++.+..++.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~g~~~~nvvp~~~~~~~diR~~p~~~~~~v~~~l~~~~~~~~~~~~~~v~~ 309 (400)
T PRK13983 240 AKDPLFDPPYSTFEPTKKEANVDNINTIPGRDVFYFDCRVLPDYDLDEVLKDIKEIADEFEEEYGVKIEV 309 (400)
T ss_pred ccccccCCCCcccccceeecCCcCCcccCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhccccCcceeE
Confidence 111 1 2346788888877 589999999999999999999999999999999999988777665554
No 16
>PRK07522 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=1.2e-43 Score=334.51 Aligned_cols=265 Identities=17% Similarity=0.266 Sum_probs=218.1
Q ss_pred HHHHHHHHHhhhCCCCCcch-HHHHHHHHHHHhhcCCCeeec----ccCceEEEEECCCCCcEEEEEeecCcccCcCCCC
Q 020439 50 YWMVNIRRKIHENPELGFQE-FETSKLIRAELDQMGIPYKFP----VAVTGVVGYIGTGQPPFVALRADMDALAMEESVE 124 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e-~~~~~~l~~~l~~~G~~~~~~----~~~~nvia~~~~~~~~~I~l~~H~DtVp~~~~~~ 124 (326)
.++++++++|++|||+|++| .++++|+.++|+++|+++++. ..++|++++++++.+|+|+|+||+||||+++ ..
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~nv~a~~~~~~~~~ill~~H~Dtv~~~~-~~ 82 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDSNLALIEWVRDYLAAHGVESELIPDPEGDKANLFATIGPADRGGIVLSGHTDVVPVDG-QA 82 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCccHHHHHHHHHHHHHcCCeEEEEecCCCCcccEEEEeCCCCCCeEEEEeecccccCCC-CC
Confidence 57899999999999999887 599999999999999998752 2458999999765458999999999999875 46
Q ss_pred Cccc---C-ccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCC--ccccEE
Q 020439 125 WEHK---S-KVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGAL--ENVEAI 194 (326)
Q Consensus 125 w~~~---~-~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~--~~~d~~ 194 (326)
|+++ . ++||++||||+ ||+++++|+|+++|++. .++++|.|+|++||| ++.|+++++++... ..+|++
T Consensus 83 W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~ 160 (385)
T PRK07522 83 WTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLRRPLHLAFSYDEEVGCLGVPSMIARLPERGVKPAGC 160 (385)
T ss_pred CCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCCCCEEEEEEeccccCCccHHHHHHHhhhcCCCCCEE
Confidence 8644 2 46899999997 99999999999999876 467899999999999 67899999875321 235666
Q ss_pred EEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhcccC--C----C--CC
Q 020439 195 FGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREAD--P----L--DS 266 (326)
Q Consensus 195 i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~~--~----~--~~ 266 (326)
+. ++|++. ....+++|..+++|+++|+++|+|.|+.|.||+..+++++..|+++..+... + + ..
T Consensus 161 i~-----~ep~~~---~~~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 232 (385)
T PRK07522 161 IV-----GEPTSM---RPVVGHKGKAAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLADRLAAPGPFDALFDPPY 232 (385)
T ss_pred EE-----ccCCCC---eeeeeecceEEEEEEEEeeccccCCCccCcCHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCc
Confidence 64 234442 2234568999999999999999999999999999999999999876432211 1 1 13
Q ss_pred ceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHH------HHHHcCCeeee
Q 020439 267 QVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLL------IVANSNSFYSW 325 (326)
Q Consensus 267 ~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~ 325 (326)
++++++.|+||...|+||++|++.+|+|++|.++.+++.++|++.+++ .+..++++++|
T Consensus 233 ~t~~i~~i~gG~~~nviP~~a~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~v~~ 297 (385)
T PRK07522 233 STLQTGTIQGGTALNIVPAECEFDFEFRNLPGDDPEAILARIRAYAEAELLPEMRAVHPEAAIEF 297 (385)
T ss_pred ceeEEeeeecCccccccCCceEEEEEEccCCCCCHHHHHHHHHHHHHhhcchhhhhhcCCCcEEE
Confidence 689999999999999999999999999999999999999999999988 24455666665
No 17
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=100.00 E-value=2e-43 Score=330.60 Aligned_cols=260 Identities=22% Similarity=0.304 Sum_probs=215.7
Q ss_pred HHHHHhhhCCCCCcch-HHHHHHHHHHHhhcCCCeeecc-----cCceEEEEECCCCCcEEEEEeecCcccCcCCCCCcc
Q 020439 54 NIRRKIHENPELGFQE-FETSKLIRAELDQMGIPYKFPV-----AVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEH 127 (326)
Q Consensus 54 ~~l~~l~~ips~s~~e-~~~~~~l~~~l~~~G~~~~~~~-----~~~nvia~~~~~~~~~I~l~~H~DtVp~~~~~~w~~ 127 (326)
+++++|++|||+|+++ .++++||.++|+++|++++... .++|+++.+++.++|+|+|+||+||||+++ +.|++
T Consensus 1 ~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~~~~~i~l~~H~Dtvp~~~-~~w~~ 79 (364)
T TIGR01892 1 EILTKLVAFDSTSFRPNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPSGAGGLALSGHTDVVPYDD-AAWTR 79 (364)
T ss_pred ChHHHhhCcCCcCCccHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCCCCCeEEEEcccccccCCC-CcCCC
Confidence 3688999999999865 7999999999999999987632 368999999653358999999999999876 57864
Q ss_pred c----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccccEEEEecc
Q 020439 128 K----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLHV 199 (326)
Q Consensus 128 ~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~~ 199 (326)
+ .+++|++||||+ |++++++|+|+++|++. .++++|.|+|++||| ++.|++++++++.+ ..|+++.
T Consensus 80 ~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~~EE~g~~G~~~~~~~~~~-~~d~~i~--- 153 (364)
T TIGR01892 80 DPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QLKKPLHLALTADEEVGCTGAPKMIEAGAG-RPRHAII--- 153 (364)
T ss_pred CCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--CcCCCEEEEEEeccccCCcCHHHHHHhcCC-CCCEEEE---
Confidence 3 367899999995 99999999999999875 467899999999999 67899999998753 4576664
Q ss_pred cCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhccc-----CCC--CCceEEEE
Q 020439 200 SSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA-----DPL--DSQVLTVA 272 (326)
Q Consensus 200 ~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~-----~~~--~~~t~~i~ 272 (326)
++|++.... ..++|..+++|+++|+++|++.|+.|.|||..+++++.+|+++..... .++ ..+++|++
T Consensus 154 --~ep~~~~~~---~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (364)
T TIGR01892 154 --GEPTRLIPV---RAHKGYASAEVTVRGRSGHSSYPDSGVNAIFRAGRFLQRLVHLADTLLREDLDEGFTPPYTTLNIG 228 (364)
T ss_pred --CCCCCceeE---EeeceEEEEEEEEEcccccccCCccCcCHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCceEEEe
Confidence 345554322 346899999999999999999999999999999999999987642211 111 24699999
Q ss_pred EEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHH-HcCCeeee
Q 020439 273 KFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVA-NSNSFYSW 325 (326)
Q Consensus 273 ~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~ 325 (326)
.|+||...|+||++|++.+|+|++|.++.+++.++|++++++.++ .++++++|
T Consensus 229 ~i~gg~~~nviP~~~~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~v~~ 282 (364)
T TIGR01892 229 VIQGGKAVNIIPGACEFVFEWRPIPGMDPEELLQLLETIAQALVRDEPGFEVQI 282 (364)
T ss_pred eeecCCCCcccCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 999999999999999999999999999999999999999998754 44555554
No 18
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=100.00 E-value=2.4e-43 Score=333.55 Aligned_cols=266 Identities=18% Similarity=0.208 Sum_probs=220.6
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCCCCcEEEEEeecCc
Q 020439 37 VKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDA 116 (326)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~I~l~~H~Dt 116 (326)
+++.+++++++ +++++++++|++|||++++|.++++||.++|+++||++...+...|++++++.+ +|+|+|+||+||
T Consensus 2 ~~~~~~i~~~~--~~~~~~~~~lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~n~~~~~g~~-~~~l~l~~H~Dt 78 (395)
T TIGR03320 2 NQIKSEAKKYR--GDMIRFLRDLVAIPSESGDEKRVAERIKEEMEKLGFDKVEIDPMGNVLGYIGHG-PKLIAMDAHIDT 78 (395)
T ss_pred chHHHHHHHHH--HHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCcEEEECCCCCEEEEeCCC-CcEEEEEecccc
Confidence 46778888877 999999999999999999999999999999999999853333457899998543 489999999999
Q ss_pred ccCcCCCCCcccC----ccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCCc--ccHHHHHHccC
Q 020439 117 LAMEESVEWEHKS----KVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG--GGAKKMLDAGA 187 (326)
Q Consensus 117 Vp~~~~~~w~~~~----~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~--~G~~~l~~~g~ 187 (326)
||+++...|.+++ ++||++||||+ |+++|++|+|+++|++.+..+++++.|++++|||.+ .+.+.++++..
T Consensus 79 Vp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~~dEE~~~g~~~~~~~~~~~ 158 (395)
T TIGR03320 79 VGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDG 158 (395)
T ss_pred cCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEecccccccCchHHHHHHHhcC
Confidence 9998878897653 56899999997 999999999999999887677889999999999943 34566766533
Q ss_pred CccccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhcc-cCC-CC
Q 020439 188 LENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSRE-ADP-LD 265 (326)
Q Consensus 188 ~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~-~~~-~~ 265 (326)
+ .+|++++. +|++. ....+++|..+++|+++|+++|+|.|+.|.||+..+++++.+|+++.... .++ .+
T Consensus 159 ~-~~d~~iv~-----ep~~~---~i~~g~~G~~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~ 229 (395)
T TIGR03320 159 I-KPEFVVIT-----EPTDM---NIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLG 229 (395)
T ss_pred C-CCCEEEEc-----CCCcc---ceEEecceEEEEEEEEeeeccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCcccC
Confidence 3 46777753 23332 12345689999999999999999999999999999999999998865321 122 34
Q ss_pred CceEEEEEEEcCC-ccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHH
Q 020439 266 SQVLTVAKFEGGG-AFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLL 314 (326)
Q Consensus 266 ~~t~~i~~i~gG~-~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~ 314 (326)
..+++++.|++|. ..|+||++|++.+|+|++|+++.+++.++|++++..
T Consensus 230 ~~t~~v~~i~~g~~~~NviP~~~~~~~diR~~p~~~~~~i~~~i~~~~~~ 279 (395)
T TIGR03320 230 KGTLTVSEIFFSSPSRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAV 279 (395)
T ss_pred cCceeeeeeecCCCCcCccCCEEEEEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 5699999999875 889999999999999999999999999999988654
No 19
>PRK08596 acetylornithine deacetylase; Validated
Probab=100.00 E-value=5.6e-43 Score=333.50 Aligned_cols=268 Identities=18% Similarity=0.142 Sum_probs=223.3
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhhhCCCCC---cchHHHHHHHHHHHhhcCCCeeec---ccCceEEEEECCC-C--CcE
Q 020439 37 VKFLDFAKKPEIFYWMVNIRRKIHENPELG---FQEFETSKLIRAELDQMGIPYKFP---VAVTGVVGYIGTG-Q--PPF 107 (326)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~~l~~l~~ips~s---~~e~~~~~~l~~~l~~~G~~~~~~---~~~~nvia~~~~~-~--~~~ 107 (326)
.++.+++++.. +++++++++|++|||+| ++|.++++||+++|+++||+++.. ++++|+++++++. + +|+
T Consensus 2 ~~~~~~i~~~~--~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~nvia~~~g~~~~~~~~ 79 (421)
T PRK08596 2 SQLLEQIELRK--DELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKS 79 (421)
T ss_pred hHHHHHHHhhH--HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEccCCCceEEEEecCCCCCCCcE
Confidence 35778888877 99999999999999999 478899999999999999998763 4578999999543 2 268
Q ss_pred EEEEeecCcccCcCCCCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccH
Q 020439 108 VALRADMDALAMEESVEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGA 179 (326)
Q Consensus 108 I~l~~H~DtVp~~~~~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~ 179 (326)
|+|+|||||||+++.+.|+++ .++||++||||+ |++++++++|+++|++.+..++++|.|+|++||| ++.|+
T Consensus 80 lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~G~ 159 (421)
T PRK08596 80 LIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVGEAGT 159 (421)
T ss_pred EEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCCcCH
Confidence 999999999999887789654 356899999998 8999999999999999887889999999999999 67899
Q ss_pred HHHHHccCCccccEEEEecccCCCCCcceeeccccccccceEEEEEEEec----------CCCcCCCCCCCcHHHHHHHH
Q 020439 180 KKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGK----------GGHAAIPQHTIDPIVAASNV 249 (326)
Q Consensus 180 ~~l~~~g~~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~----------~~Hss~p~~g~NAi~~~~~~ 249 (326)
+++++++. ..|+++..+ |++.. ..+++|...+.++++|+ .+|++.|+.|.|||..++++
T Consensus 160 ~~~~~~~~--~~d~~i~~e-----p~~~~----~~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~~~p~~G~nai~~~~~~ 228 (421)
T PRK08596 160 LQCCERGY--DADFAVVVD-----TSDLH----MQGQGGVITGWITVKSPQTFHDGTRRQMIHAGGGLFGASAIEKMMKI 228 (421)
T ss_pred HHHHhcCC--CCCEEEECC-----CCCCc----cccccceeeEEEEEEeecccccccccccccccCCccCcCHHHHHHHH
Confidence 99999875 357777532 33322 13457877777777775 47999999999999999999
Q ss_pred HHHHhHhhhc----c-cC--CCCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHH
Q 020439 250 IVSLQHLVSR----E-AD--PLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVA 317 (326)
Q Consensus 250 i~~l~~~~~~----~-~~--~~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~ 317 (326)
+.+|+.+... . .. +.+..++|++.|+||...|+||++|++.+|+|+.|+++.+++.++|++.+++.+.
T Consensus 229 i~~l~~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~nvvP~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~ 303 (421)
T PRK08596 229 IQSLQELERHWAVMKSYPGFPPGTNTINPAVIEGGRHAAFIADECRLWITVHFYPNETYEQVIKEIEEYIGKVAA 303 (421)
T ss_pred HHHHHHHHHHHhhcccCccCCCCCcceeeeeeeCCCCCCccCceEEEEEEeeeCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999876421 0 11 1245799999999999999999999999999999999999999999999988653
No 20
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.6e-42 Score=325.81 Aligned_cols=261 Identities=19% Similarity=0.246 Sum_probs=214.4
Q ss_pred HHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeec--ccCceEEEEECCCCCcEEEEEeecCcccCcCCCCCcc
Q 020439 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFP--VAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEH 127 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--~~~~nvia~~~~~~~~~I~l~~H~DtVp~~~~~~w~~ 127 (326)
.++++++++|++|||+|++|.++++|+.++|+++||+++.. ++.+|+++++++ ++|+|+|+||+||||+++.+.|++
T Consensus 2 ~~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~n~~~~~g~-~~~~i~l~~H~D~Vp~g~~~~w~~ 80 (375)
T PRK13009 2 SDVLELAQDLIRRPSVTPDDAGCQDLLAERLEALGFTCERMDFGDVKNLWARRGT-EGPHLCFAGHTDVVPPGDLEAWTS 80 (375)
T ss_pred chHHHHHHHHhCCCCCCCchhhHHHHHHHHHHHcCCeEEEeccCCCcEEEEEecC-CCCEEEEEeecccCCCCCcccCCC
Confidence 36789999999999999999999999999999999998752 346899999854 358999999999999987778965
Q ss_pred c----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCC-c-ccHHHHHHccC--CccccEEEE
Q 020439 128 K----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEG-G-GGAKKMLDAGA--LENVEAIFG 196 (326)
Q Consensus 128 ~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~-~G~~~l~~~g~--~~~~d~~i~ 196 (326)
+ .++||++||||+ |++++++++|++++++.+..++++|.|++++|||+ + .|++.+++... ...+|+++.
T Consensus 81 ~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~ 160 (375)
T PRK13009 81 PPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGPAINGTVKVLEWLKARGEKIDYCIV 160 (375)
T ss_pred CCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccccccCHHHHHHHHHHcCcCCCEEEE
Confidence 4 256899999997 89999999999999888777889999999999994 3 59998876421 124677765
Q ss_pred ecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhccc-CCCCCceEEEEEEE
Q 020439 197 LHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA-DPLDSQVLTVAKFE 275 (326)
Q Consensus 197 ~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~-~~~~~~t~~i~~i~ 275 (326)
.++......+. ....+++|..+++|+++|+++|++.|+.|.||+..+++++.+|+.+..+.. ..+.+.+++++.|+
T Consensus 161 ~ep~~~~~~~~---~i~~g~~g~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~i~ 237 (375)
T PRK13009 161 GEPTSTERLGD---VIKNGRRGSLTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDEGNEFFPPTSLQITNID 237 (375)
T ss_pred cCCCcccCCCC---eEEEecceEEEEEEEEEecCcccCCCCcccCHHHHHHHHHHHHHhhhccCCCccCCCceEEEEEEe
Confidence 33221111111 123456899999999999999999999999999999999999987642221 23456789999999
Q ss_pred cCC-ccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHH
Q 020439 276 GGG-AFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLL 314 (326)
Q Consensus 276 gG~-~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~ 314 (326)
||. ..|+||++|++.+|+|++|.++.+++.++|++.+++
T Consensus 238 ~G~~~~nvip~~~~~~~diR~~~~~~~e~i~~~i~~~~~~ 277 (375)
T PRK13009 238 AGTGATNVIPGELEAQFNFRFSTEHTAESLKARVEAILDK 277 (375)
T ss_pred cCCCCCcccCCcEEEEEEEecCCCCCHHHHHHHHHHHHHh
Confidence 886 789999999999999999999999999999998874
No 21
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=100.00 E-value=1.9e-42 Score=328.03 Aligned_cols=271 Identities=18% Similarity=0.199 Sum_probs=218.3
Q ss_pred HHHHHHHHHHhhhCCCCCcc--hHHHHHHHHHHHhhcCCCeeec---ccCceEEEEECCC-C-CcEEEEEeecCcccCcC
Q 020439 49 FYWMVNIRRKIHENPELGFQ--EFETSKLIRAELDQMGIPYKFP---VAVTGVVGYIGTG-Q-PPFVALRADMDALAMEE 121 (326)
Q Consensus 49 ~~~~i~~l~~l~~ips~s~~--e~~~~~~l~~~l~~~G~~~~~~---~~~~nvia~~~~~-~-~~~I~l~~H~DtVp~~~ 121 (326)
.++++++|++|++|||++++ |.++++|+.++|+++|++++.. ++++|++++++++ + .|+|+|+|||||||+++
T Consensus 8 ~~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~~ 87 (400)
T TIGR01880 8 EDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVVLTWPGSNPELPSILLNSHTDVVPVFR 87 (400)
T ss_pred hHHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEecCCceeEEEEEecCCCCCCeEEEEcccccCCCCc
Confidence 48899999999999999764 6789999999999999998652 3578999998543 3 38999999999999876
Q ss_pred CCCCccc---C-c-cCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-Cc-ccHHHHHHccCCccc
Q 020439 122 SVEWEHK---S-K-VPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GG-GGAKKMLDAGALENV 191 (326)
Q Consensus 122 ~~~w~~~---~-~-~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~-~G~~~l~~~g~~~~~ 191 (326)
..|+++ . + +||++||||+ |++++++|+|+++|++.+..++++|.|+|++||| ++ .|++++++++.+.+.
T Consensus 88 -~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~~~~~~ 166 (400)
T TIGR01880 88 -EHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEFKAL 166 (400)
T ss_pred -ccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhHHHHHHHhhhccCC
Confidence 468643 2 2 5899999998 8999999999999998887889999999999999 55 499999988766666
Q ss_pred cEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhc------c---cC
Q 020439 192 EAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSR------E---AD 262 (326)
Q Consensus 192 d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~------~---~~ 262 (326)
|+.++.+....+|++.. ..+.+++|..+++|+++|+++|++.|. +.||+..+++++..|+++... . ..
T Consensus 167 ~~~~~~d~g~~~~~~~~--~i~~~~kG~~~~~l~v~G~~~Hs~~~~-~~nai~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 243 (400)
T TIGR01880 167 NLGFALDEGLASPDDVY--RVFYAERVPWWVVVTAPGNPGHGSKLM-ENTAMEKLEKSVESIRRFRESQFQLLQSNPDLA 243 (400)
T ss_pred ceEEEEcCCCccccccc--ceeEEeeEEEEEEEEEecCCCCCCCCC-CCCHHHHHHHHHHHHHHhhHHHHHHHhcCcccc
Confidence 76666532222344422 234577999999999999999999864 479999999999988765211 0 01
Q ss_pred CCCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeee
Q 020439 263 PLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 263 ~~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
+...+|+|++.|+||...|+||++|++.+|+|++|.++.+++.+.|++++++. ..+++++|
T Consensus 244 ~~~~~t~~v~~i~gG~~~nvIP~~a~~~~diR~~p~~~~~~~~~~i~~~i~~~--~~~~~~~~ 304 (400)
T TIGR01880 244 IGDVTSVNLTKLKGGVQSNVIPSEAEAGFDIRLAPSVDFEEMENRLDEWCADA--GEGVTYEF 304 (400)
T ss_pred ccccceeecceeccCCcCCcCCCccEEEEEEeeCCCCCHHHHHHHHHHHHhcc--CCceEEEE
Confidence 11247999999999999999999999999999999999999999999998874 23455544
No 22
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=100.00 E-value=1.3e-42 Score=325.82 Aligned_cols=250 Identities=20% Similarity=0.216 Sum_probs=201.6
Q ss_pred HHHHhhhCCCCCcchHHHHHHHHHHHhhcCCC-eeecccCceEEEEECCCCCcEEEEEeecCcccCcC--CCCCccc---
Q 020439 55 IRRKIHENPELGFQEFETSKLIRAELDQMGIP-YKFPVAVTGVVGYIGTGQPPFVALRADMDALAMEE--SVEWEHK--- 128 (326)
Q Consensus 55 ~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~-~~~~~~~~nvia~~~~~~~~~I~l~~H~DtVp~~~--~~~w~~~--- 128 (326)
++++|++|||+|++|.++++||.++|+++|++ ++....+.|++++++++++|+|+|+|||||||+++ ...|+++
T Consensus 1 ll~~Lv~ipS~s~~e~~~~~~i~~~l~~~g~~~~~~~~~~~nvva~~~~~~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~ 80 (373)
T TIGR01900 1 LLQQIMDIFSPSDHEGPIADEIEAALNNLELEGLEVFRFGDNVLARTDFGKASRVILAGHIDTVPIADNFPPKWLEPGDS 80 (373)
T ss_pred ChHHHhCCCCCCchHHHHHHHHHHHHhhccccCceEEEECCEEEEecCCCCCCeEEEeCccccccCCCCChhhhccCccc
Confidence 46889999999999999999999999999654 22222245999998654458999999999999874 2458542
Q ss_pred ---------CccCCeeecCCc---hHHHHHHHHHHHHHHh--ccCCCCceEEEEEecCCCC-c--ccHHHHHHccC-Ccc
Q 020439 129 ---------SKVPGKMHACGH---DAHVAMLLGAAKMLQV--FRHEIKGTIVLVFQPAEEG-G--GGAKKMLDAGA-LEN 190 (326)
Q Consensus 129 ---------~~~~g~l~GrG~---k~~~a~~l~a~~~l~~--~~~~~~~~i~~~~~~dEE~-~--~G~~~l~~~g~-~~~ 190 (326)
.++||++||||+ |++++++|+|+++|.+ .+..++++|.|+|++|||. + .|+++++++.. +..
T Consensus 81 ~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~ 160 (373)
T TIGR01900 81 LIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLA 160 (373)
T ss_pred ccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEecccccCCCCCHHHHHHhCccccc
Confidence 456899999998 8999999999999954 3456789999999999994 3 49999988642 124
Q ss_pred ccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhccc--CC-CCCc
Q 020439 191 VEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA--DP-LDSQ 267 (326)
Q Consensus 191 ~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~--~~-~~~~ 267 (326)
.|++++. +|++. ....+++|..+++|+++|+++|+|.|+.|.|||..+++++.+|+++..... ++ ....
T Consensus 161 ~d~~iv~-----Ept~~---~i~~g~~G~~~~~i~v~G~~~H~s~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~ 232 (373)
T TIGR01900 161 ADFAIIG-----EPTGG---GIEAGCNGNIRFDVTAHGVAAHSARAWLGDNAIHKAADIINKLAAYEAAEVNIDGLDYRE 232 (373)
T ss_pred CCEEEEE-----CCCCC---cccccceeeEEEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHHhhcccccccCCcccc
Confidence 6766653 24332 123467999999999999999999999999999999999999987643211 11 1246
Q ss_pred eEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHH
Q 020439 268 VLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVH 312 (326)
Q Consensus 268 t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~ 312 (326)
++|++.|+||...|+||++|++++|+|+.|+++.+++.++|++++
T Consensus 233 t~~v~~I~GG~~~nvVP~~a~~~~diR~~p~~~~e~~~~~i~~~~ 277 (373)
T TIGR01900 233 GLNATFCEGGKANNVIPDEARMHLNFRFAPDKDLAEAKALMMGAD 277 (373)
T ss_pred eEEEEEEeCCCCCcccCCeEEEEEEEecCCCcCHHHHHHHHHhhh
Confidence 899999999999999999999999999999999999999997664
No 23
>PRK08201 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-42 Score=333.10 Aligned_cols=281 Identities=15% Similarity=0.149 Sum_probs=220.4
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhhhCCCCCc------chHHHHHHHHHHHhhcCCC-eee--cccCceEEEEECC-CCCc
Q 020439 37 VKFLDFAKKPEIFYWMVNIRRKIHENPELGF------QEFETSKLIRAELDQMGIP-YKF--PVAVTGVVGYIGT-GQPP 106 (326)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~------~e~~~~~~l~~~l~~~G~~-~~~--~~~~~nvia~~~~-~~~~ 106 (326)
+++.+++++++ +++++++++|++|||+|+ ++.++++||+++|+++||+ ++. ..+++|+++.+.+ +++|
T Consensus 3 ~~~~~~~~~~~--~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~~~~~~~~ 80 (456)
T PRK08201 3 QQVEAYLRERR--EAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADWLHAPGKP 80 (456)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCEEEEEecCCCCCC
Confidence 57888899988 999999999999999995 4678999999999999997 443 3356789998744 3358
Q ss_pred EEEEEeecCcccCcCCCCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-Cccc
Q 020439 107 FVALRADMDALAMEESVEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGG 178 (326)
Q Consensus 107 ~I~l~~H~DtVp~~~~~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G 178 (326)
+|+|+||+||||+++...|+++ .++||++||||+ ||+++++++|+++|++.+..++++|.|++++||| ++.|
T Consensus 81 ~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g 160 (456)
T PRK08201 81 TVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVKFCIEGEEEIGSPN 160 (456)
T ss_pred EEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCCcc
Confidence 9999999999999876679754 357899999997 8999999999999987666778899999999999 7788
Q ss_pred HHHHHHccC--CccccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCC--CcCCCCC-CCcHHHHHHHHHHHH
Q 020439 179 AKKMLDAGA--LENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGG--HAAIPQH-TIDPIVAASNVIVSL 253 (326)
Q Consensus 179 ~~~l~~~g~--~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~--Hss~p~~-g~NAi~~~~~~i~~l 253 (326)
+..++++.. + ..|++++.++....+.. . ..+.+++|..+++|+++|+++ |||.|.. +.|||..+++++.+|
T Consensus 161 ~~~~l~~~~~~~-~~d~~ii~e~~~~~~~~-~--~i~~g~kG~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~~~~~~l~~l 236 (456)
T PRK08201 161 LDSFVEEEKDKL-AADVVLISDTTLLGPGK-P--AICYGLRGLAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLASL 236 (456)
T ss_pred HHHHHHhhHHhc-cCCEEEEeCCCcCCCCC-E--EEEEecCCeEEEEEEEEeCCCCCccccccCcCCCHHHHHHHHHHhc
Confidence 988887531 2 34666654322111111 1 124567999999999999998 9997654 579999999999999
Q ss_pred hHhhhcc-----------------------------------cCC-C------------CCceEEEEEEEcCCc----cc
Q 020439 254 QHLVSRE-----------------------------------ADP-L------------DSQVLTVAKFEGGGA----FN 281 (326)
Q Consensus 254 ~~~~~~~-----------------------------------~~~-~------------~~~t~~i~~i~gG~~----~n 281 (326)
+++..+. ..+ + ..+|+|++.|+||.. .|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~~~~~~N 316 (456)
T PRK08201 237 HDEHGTVAVEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGYTALERTWARPTLELNGVYGGFQGEGTKT 316 (456)
T ss_pred CCCCCCEecCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcchHHHHHHHhCCcEEEEeeecCCCCCCCce
Confidence 7532100 000 0 135899999998753 79
Q ss_pred cccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeee
Q 020439 282 IIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYS 324 (326)
Q Consensus 282 ~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 324 (326)
+||++|++.+|+|++|+++.+++.++|++++++.. ..+.+++
T Consensus 317 vVP~~a~~~~diR~~p~~~~e~v~~~i~~~l~~~~-~~~~~v~ 358 (456)
T PRK08201 317 VIPAEAHAKITCRLVPDQDPQEILDLIEAHLQAHT-PAGVRVT 358 (456)
T ss_pred EECcceEEEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCCeEEE
Confidence 99999999999999999999999999999988642 2334444
No 24
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=100.00 E-value=7.2e-42 Score=320.89 Aligned_cols=258 Identities=21% Similarity=0.284 Sum_probs=210.2
Q ss_pred HHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeec--ccCceEEEEECCCCCcEEEEEeecCcccCcCCCCCccc--
Q 020439 53 VNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFP--VAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEHK-- 128 (326)
Q Consensus 53 i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--~~~~nvia~~~~~~~~~I~l~~H~DtVp~~~~~~w~~~-- 128 (326)
++++++|++|||+|++|.++++||.++|+++||+++.. ++++|+++++++ .+|+|+|+||+||||+++.+.|+++
T Consensus 2 ~~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~~g~-~~~~i~~~~H~DtVp~~~~~~W~~~p~ 80 (370)
T TIGR01246 2 TELAKELISRPSVTPNDAGCQDIIAERLEKLGFEIEWMHFGDTKNLWATRGT-GEPVLAFAGHTDVVPAGPEEQWSSPPF 80 (370)
T ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHHHHHCCCEEEEEecCCCceEEEEecC-CCcEEEEEccccccCCCCccccccCCC
Confidence 57899999999999999999999999999999998753 346799998755 4589999999999999877789654
Q ss_pred --CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCC-c-ccHHHHHHccC--CccccEEEEecc
Q 020439 129 --SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEG-G-GGAKKMLDAGA--LENVEAIFGLHV 199 (326)
Q Consensus 129 --~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~-~G~~~l~~~g~--~~~~d~~i~~~~ 199 (326)
..+||++||||+ |+++++++.|++.+.+.+.+++++|.|+|++|||+ + .|++.+++... ...+|+++..++
T Consensus 81 ~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~ep 160 (370)
T TIGR01246 81 EPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGTAIDGTKKVVETLMARDELIDYCIVGEP 160 (370)
T ss_pred CcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCCcCHHHHHHHHHhcCCCCCEEEEcCC
Confidence 256899999997 79999999999999887777889999999999994 3 69998876321 124677775432
Q ss_pred cCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhccc-CCCCCceEEEEEEEcCC
Q 020439 200 SSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA-DPLDSQVLTVAKFEGGG 278 (326)
Q Consensus 200 ~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~-~~~~~~t~~i~~i~gG~ 278 (326)
....+.+.. ...+++|..+++++++|+++|++.|+.|.||+..+++++..|+....... ....+.+++++.|+||.
T Consensus 161 ~~~~~~~~~---i~~~~~G~~~~~v~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~t~~i~~i~~g~ 237 (370)
T TIGR01246 161 SSVKKLGDV---IKNGRRGSITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWDEGNEFFPPTSLQITNIHAGT 237 (370)
T ss_pred CCcccCCce---EEEeeeEEEEEEEEEEccCcccCCcccCCCHHHHHHHHHHHHhhhhhccCCccCCCCceEeeeeecCC
Confidence 211111211 23456899999999999999999999999999999999999986532211 12345799999999996
Q ss_pred -ccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHH
Q 020439 279 -AFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLL 314 (326)
Q Consensus 279 -~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~ 314 (326)
..|+||++|++.+|+|++|.++.+++.+.|++++++
T Consensus 238 ~~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~ 274 (370)
T TIGR01246 238 GANNVIPGELYVQFNLRFSTEVSDEILKQRVEAILDQ 274 (370)
T ss_pred CCCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999888765
No 25
>PRK06446 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-42 Score=328.87 Aligned_cols=261 Identities=16% Similarity=0.209 Sum_probs=210.9
Q ss_pred HHHHHHHHHhhhCCCCCcc-h--HHHHHHHHHHHhhcCCCeeec--ccCceEEEEECCCCCcEEEEEeecCcccCcCCCC
Q 020439 50 YWMVNIRRKIHENPELGFQ-E--FETSKLIRAELDQMGIPYKFP--VAVTGVVGYIGTGQPPFVALRADMDALAMEESVE 124 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~-e--~~~~~~l~~~l~~~G~~~~~~--~~~~nvia~~~~~~~~~I~l~~H~DtVp~~~~~~ 124 (326)
+++++++++|++|||+|++ | .++++||.++|+++||+++.. .+++|++++++++.+|+|+|+||+||||+++.+.
T Consensus 2 ~~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~~~~~~lia~~~~~~~~~vll~gH~DvVp~~~~~~ 81 (436)
T PRK06446 2 DEELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERTKGHPVVYGEINVGAKKTLLIYNHYDVQPVDPLSE 81 (436)
T ss_pred hhHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCEEEEEecccCCCCCcccc
Confidence 5789999999999999964 3 799999999999999998763 3578999998654458999999999999987678
Q ss_pred Cccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHcc--CCccccEE
Q 020439 125 WEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAG--ALENVEAI 194 (326)
Q Consensus 125 w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g--~~~~~d~~ 194 (326)
|+++ .++||++||||+ ||+++++|.|++.+++.+ .++.+|.|+|++||| ++.|+++++++. .+ +.|++
T Consensus 82 W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~-~~d~v 159 (436)
T PRK06446 82 WKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVNVKFLYEGEEEIGSPNLEDFIEKNKNKL-KADSV 159 (436)
T ss_pred ccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCCEEEEEEcccccCCHhHHHHHHHHHHHh-CCCEE
Confidence 9754 356999999997 899999999999887654 578899999999999 778999888762 22 35777
Q ss_pred EEecccCCCCCcceeeccccccccceEEEEEEEe--cCCCcCCCCCCCcHHHHHHHHHHHHhHhhhcc------------
Q 020439 195 FGLHVSSLFPVGTVASRPGPTLAAGGFFEAVING--KGGHAAIPQHTIDPIVAASNVIVSLQHLVSRE------------ 260 (326)
Q Consensus 195 i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G--~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~------------ 260 (326)
+++. ....+.+...+ ..+++|..+++++++| +++|+|.|+.|.||+..+++++.+|.+.....
T Consensus 160 i~E~-~~~~~~~~~~i--~~~~kG~~~~~l~v~G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 236 (436)
T PRK06446 160 IMEG-AGLDPKGRPQI--VLGVKGLLYVELVLRTGTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDVREL 236 (436)
T ss_pred EECC-CCccCCCCeEE--EEecCeEEEEEEEEEeCCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcCCCCC
Confidence 7521 11112232122 3467999999999999 99999999999999999999999997542000
Q ss_pred ----------------------------c--------CCCCCceEEEEEEEcC----CccccccCeEEEEEEEEccChhh
Q 020439 261 ----------------------------A--------DPLDSQVLTVAKFEGG----GAFNIIPDSVTIGGTFRAFSKES 300 (326)
Q Consensus 261 ----------------------------~--------~~~~~~t~~i~~i~gG----~~~n~iP~~~~~~~diR~~~~~~ 300 (326)
. .....+++|++.|+|| ...|+||++|++++|+|++|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~t~nv~~i~~g~~~~~~~nvvP~~a~~~~d~R~~p~~~ 316 (436)
T PRK06446 237 TEEERELLKKYDIDVEELRKALGFKELKYSDREKIAEALLTEPTCNIDGFYSGYTGKGSKTIVPSRAFAKLDFRLVPNQD 316 (436)
T ss_pred CHHHHHHHHhCCCCHHHHHHHhCCccccCCCcccHHHHHHhCCcEEEeeeeccccCCCCCcEecCceEEEEEEEcCCCCC
Confidence 0 0012479999999987 46799999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 020439 301 IIQLKQRIEEVHLLI 315 (326)
Q Consensus 301 ~~~~~~~i~~~~~~~ 315 (326)
.+++.++|++++++.
T Consensus 317 ~~~v~~~l~~~~~~~ 331 (436)
T PRK06446 317 PYKIFELLKKHLQKV 331 (436)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999998773
No 26
>PRK07907 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-41 Score=325.17 Aligned_cols=271 Identities=15% Similarity=0.169 Sum_probs=217.6
Q ss_pred cHHHHHhhcCchhHHHHHHHHHHhhhCCCCCcc------hHHHHHHHHHHHhhcCC-Ceeec--ccCceEEEEECCC-CC
Q 020439 36 PVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQ------EFETSKLIRAELDQMGI-PYKFP--VAVTGVVGYIGTG-QP 105 (326)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~~------e~~~~~~l~~~l~~~G~-~~~~~--~~~~nvia~~~~~-~~ 105 (326)
.+++.+++++++ +++++++++|++|||+|++ +.++++||.++|+++|| +++.. ++++|++++++++ .+
T Consensus 6 ~~~~~~~i~~~~--~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~nl~a~~~~~~~~ 83 (449)
T PRK07907 6 ADDLRARVAELL--PRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVSADGAPAVIGTRPAPPGA 83 (449)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEecCCCCEEEEEecCCCCC
Confidence 457888999988 9999999999999999963 67899999999999998 67653 4678999998654 35
Q ss_pred cEEEEEeecCcccCcCCCCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-Ccc
Q 020439 106 PFVALRADMDALAMEESVEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGG 177 (326)
Q Consensus 106 ~~I~l~~H~DtVp~~~~~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~ 177 (326)
|+|+|+||+||||+++...|+++ .++||+|||||+ ||+++++++|+++| +.+++++|.|++++||| ++.
T Consensus 84 ~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~~~~~i~~~~~~dEE~g~~ 160 (449)
T PRK07907 84 PTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL---GGDLPVGVTVFVEGEEEMGSP 160 (449)
T ss_pred CEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh---ccCCCCcEEEEEEcCcccCCc
Confidence 89999999999999877789765 356899999997 89999999999998 33567899999999999 778
Q ss_pred cHHHHHHccC-CccccEEEEecccCCCC-CcceeeccccccccceEEEEEEE--ecCCCcCC-CCCCCcHHHHHHHHHHH
Q 020439 178 GAKKMLDAGA-LENVEAIFGLHVSSLFP-VGTVASRPGPTLAAGGFFEAVIN--GKGGHAAI-PQHTIDPIVAASNVIVS 252 (326)
Q Consensus 178 G~~~l~~~g~-~~~~d~~i~~~~~~~~~-~g~~~~~~g~~~~G~~~~~i~~~--G~~~Hss~-p~~g~NAi~~~~~~i~~ 252 (326)
|+++++++.. .-+.|++++.+ ++.. .+... ...+++|..+++++++ |+++|+|. +..+.||+..+++++.+
T Consensus 161 g~~~~l~~~~~~~~~d~~iv~E--~~~~~~~~p~--i~~~~kG~~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~l~~ 236 (449)
T PRK07907 161 SLERLLAEHPDLLAADVIVIAD--SGNWSVGVPA--LTTSLRGNADVVVTVRTLEHAVHSGQFGGAAPDALTALVRLLAT 236 (449)
T ss_pred cHHHHHHhchHhhcCCEEEEec--CCcCCCCCeE--EEEecCCcEEEEEEEEECCCCCCCccccccCCCHHHHHHHHHHh
Confidence 9999988631 11357666543 2211 11111 2346799999999998 89999997 46689999999999999
Q ss_pred HhHhhhcc-------cCC---------------------------------CCCceEEEEEEEc---CCccccccCeEEE
Q 020439 253 LQHLVSRE-------ADP---------------------------------LDSQVLTVAKFEG---GGAFNIIPDSVTI 289 (326)
Q Consensus 253 l~~~~~~~-------~~~---------------------------------~~~~t~~i~~i~g---G~~~n~iP~~~~~ 289 (326)
|.+...+. ..+ ...++++++.|++ |...|+||++|++
T Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~~~~~g~~~nvIP~~a~~ 316 (449)
T PRK07907 237 LHDEDGNVAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITVIGIDAPPVAGASNALPPSARA 316 (449)
T ss_pred hCCCCCCEeCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEEEeeecCCCCCCCCEecCceEE
Confidence 97642110 000 1246899999996 4688999999999
Q ss_pred EEEEEccChhhHHHHHHHHHHHHHHH
Q 020439 290 GGTFRAFSKESIIQLKQRIEEVHLLI 315 (326)
Q Consensus 290 ~~diR~~~~~~~~~~~~~i~~~~~~~ 315 (326)
++|+|++|+++.+++.+.|++++++.
T Consensus 317 ~~diR~~p~~~~e~v~~~l~~~l~~~ 342 (449)
T PRK07907 317 RLSLRVAPGQDAAEAQDALVAHLEAH 342 (449)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998875
No 27
>PRK09133 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=328.53 Aligned_cols=259 Identities=18% Similarity=0.184 Sum_probs=210.4
Q ss_pred HHHHHHHHHhhhCCCCC--cchHHHHHHHHHHHhhcCCCee---e---cccCceEEEEECCC-CCcEEEEEeecCcccCc
Q 020439 50 YWMVNIRRKIHENPELG--FQEFETSKLIRAELDQMGIPYK---F---PVAVTGVVGYIGTG-QPPFVALRADMDALAME 120 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s--~~e~~~~~~l~~~l~~~G~~~~---~---~~~~~nvia~~~~~-~~~~I~l~~H~DtVp~~ 120 (326)
+++++++++|++|||++ ++|.++++|+.++|+++|++++ . .++++|+++++++. ++++|+|+|||||||++
T Consensus 37 ~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~nli~~~~g~~~~~~lll~~H~DtVp~~ 116 (472)
T PRK09133 37 QAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGPYPRKGNLVARLRGTDPKKPILLLAHMDVVEAK 116 (472)
T ss_pred HHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccCCCCceeEEEEecCCCCCCcEEEEeecccCCCC
Confidence 88999999999999998 7789999999999999999864 2 23568999998553 44899999999999986
Q ss_pred CCCCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-C-cccHHHHHHccC-Ccc
Q 020439 121 ESVEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-G-GGGAKKMLDAGA-LEN 190 (326)
Q Consensus 121 ~~~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~-~~G~~~l~~~g~-~~~ 190 (326)
+ ..|+++ .++||++||||+ ||+++++|+|+++|++.+..++++|.|++++||| + +.|+++++++.. .-+
T Consensus 117 ~-~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~~~ 195 (472)
T PRK09133 117 R-EDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKRDIILALTGDEEGTPMNGVAWLAENHRDLID 195 (472)
T ss_pred h-hcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCccchHHHHHHHHhhccC
Confidence 5 468765 356899999997 8999999999999998877889999999999999 4 479999987632 113
Q ss_pred ccEEEEecccC------CCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhcc----
Q 020439 191 VEAIFGLHVSS------LFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSRE---- 260 (326)
Q Consensus 191 ~d~~i~~~~~~------~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~---- 260 (326)
.|+++. +... ++|+.. ..+.+++|..+++|+++|+++|+|.|+ +.|||..++++|.+|+++..+.
T Consensus 196 ~~~~i~-e~~~~~~~~~gept~~---~i~~g~kG~~~~~i~v~G~~~Hss~p~-~~nAi~~l~~~l~~l~~~~~~~~~~~ 270 (472)
T PRK09133 196 AEFALN-EGGGGTLDEDGKPVLL---TVQAGEKTYADFRLEVTNPGGHSSRPT-KDNAIYRLAAALSRLAAYRFPVMLND 270 (472)
T ss_pred eEEEEE-CCCccccCCCCCceEE---EeeeecceeEEEEEEEecCCCCCCCCC-CCChHHHHHHHHHHHhhCCCCCccCC
Confidence 456554 3221 223322 234577999999999999999999996 5899999999999987641100
Q ss_pred --------------------------------------cCC----CCCceEEEEEEEcCCccccccCeEEEEEEEEccCh
Q 020439 261 --------------------------------------ADP----LDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSK 298 (326)
Q Consensus 261 --------------------------------------~~~----~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~ 298 (326)
.++ ...+++|++.|+||...|+||++|++.+|+|++|+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gG~~~NvVP~~a~~~lDiR~~p~ 350 (472)
T PRK09133 271 VTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALLSADPSYNAMLRTTCVATMLEGGHAENALPQRATANVNCRIFPG 350 (472)
T ss_pred ccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHHhcCcchhheeeeeEEeeEEecCCcCccCCCceEEEEEEEeCCc
Confidence 001 13569999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHH
Q 020439 299 ESIIQLKQRIEEVHLL 314 (326)
Q Consensus 299 ~~~~~~~~~i~~~~~~ 314 (326)
++.+++.++|++++++
T Consensus 351 ~~~e~v~~~I~~~i~~ 366 (472)
T PRK09133 351 DTIEAVRATLKQVVAD 366 (472)
T ss_pred hhHHHHHHHHHHHhcC
Confidence 9999999999998764
No 28
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=3.1e-41 Score=314.56 Aligned_cols=251 Identities=19% Similarity=0.231 Sum_probs=207.3
Q ss_pred hHHHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhc-CCCeeecccCceEEEEECCCCCcEEEEEeecCcccCcCCCCCc
Q 020439 48 IFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQM-GIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWE 126 (326)
Q Consensus 48 ~~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~-G~~~~~~~~~~nvia~~~~~~~~~I~l~~H~DtVp~~~~~~w~ 126 (326)
+.+++++++++|++|||+|++|.++++||.++|+++ |+++... ..|++++++++.+++|+|+|||||||+++ .++
T Consensus 5 ~~~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~i~l~~H~Dtvp~~~--~~~ 80 (352)
T PRK13007 5 LAADLAELTAALVDIPSVSGDEKALADAVEAALRALPHLEVIRH--GNSVVARTDLGRPSRVVLAGHLDTVPVAD--NLP 80 (352)
T ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcCceEEec--CCeEEEEccCCCCCeEEEEccccccCCCC--CCC
Confidence 348899999999999999999999999999999996 8887654 46899998655446899999999999875 344
Q ss_pred ccCccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-Cc--ccHHHHHHcc-CCccccEEEEecc
Q 020439 127 HKSKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GG--GGAKKMLDAG-ALENVEAIFGLHV 199 (326)
Q Consensus 127 ~~~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~--~G~~~l~~~g-~~~~~d~~i~~~~ 199 (326)
+ ..+||++||||+ |+++|++|+|+++|. +++++|.|+|++||| ++ .|++.++... .+.+.|+++..+
T Consensus 81 ~-~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~e- 154 (352)
T PRK13007 81 S-RREGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFYDCEEVEAEANGLGRLAREHPEWLAGDFAILLE- 154 (352)
T ss_pred c-ceeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEEecccccCCcccHHHHHHhcccccCCCEEEEec-
Confidence 3 356899999998 899999999999993 467899999999999 44 5888888653 223467777643
Q ss_pred cCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhcccCC---CCCceEEEEEEEc
Q 020439 200 SSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADP---LDSQVLTVAKFEG 276 (326)
Q Consensus 200 ~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~~~---~~~~t~~i~~i~g 276 (326)
|++.. ...+++|..+++|+++|+++|+|.|+.|.||+..+++++.+++++..+.... ....+++++.|+|
T Consensus 155 ----p~~~~---i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~i~g 227 (352)
T PRK13007 155 ----PTDGV---IEAGCQGTLRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAAYEPREVVVDGLTYREGLNAVRISG 227 (352)
T ss_pred ----CCCCc---eEeeccceEEEEEEEEecccccCCCccCcCHHHHHHHHHHHHHHhcccccccCCCCccceeEeEeEec
Confidence 23221 1345689999999999999999999999999999999999998765332111 1235899999999
Q ss_pred CCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHH
Q 020439 277 GGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLI 315 (326)
Q Consensus 277 G~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~ 315 (326)
|...|+||++|++.+|+|++|.++.+++.++|++++.+.
T Consensus 228 G~~~nviP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~ 266 (352)
T PRK13007 228 GVAGNVIPDECVVNVNYRFAPDRSLEEALAHVREVFDGF 266 (352)
T ss_pred CCcCccCCCeEEEEEEEeeCCCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999887754
No 29
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=3e-41 Score=319.29 Aligned_cols=260 Identities=20% Similarity=0.276 Sum_probs=214.4
Q ss_pred HHHHHHHHHhhhCCCCC---cchHHHHHHHHHHHhhcCCCeeecc---c--------CceEEEEECCCCCcEEEEEeecC
Q 020439 50 YWMVNIRRKIHENPELG---FQEFETSKLIRAELDQMGIPYKFPV---A--------VTGVVGYIGTGQPPFVALRADMD 115 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s---~~e~~~~~~l~~~l~~~G~~~~~~~---~--------~~nvia~~~~~~~~~I~l~~H~D 115 (326)
+++++++++|++|||+| ++|.++++||+++|+++|++++... + ++|+++..++++ |+|+|+||||
T Consensus 6 ~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ill~~HlD 84 (394)
T PRK08651 6 FDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARRGSGN-PHLHFNGHYD 84 (394)
T ss_pred HHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEeCCCC-ceEEEEeeee
Confidence 89999999999999998 6778999999999999999987632 1 245777765444 8999999999
Q ss_pred cccCcCCCCCc---ccC-ccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccC
Q 020439 116 ALAMEESVEWE---HKS-KVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGA 187 (326)
Q Consensus 116 tVp~~~~~~w~---~~~-~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~ 187 (326)
|||+++.. |. |.. +++|++||||+ |++++++|+|++.+++.+ +++|.|+|++||| ++.|++++++++.
T Consensus 85 tvp~~~~~-~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~v~~~~~~~EE~g~~G~~~~~~~~~ 160 (394)
T PRK08651 85 VVPPGEGW-SVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DGNIELAIVPDEETGGTGTGYLVEEGK 160 (394)
T ss_pred eecCCCCc-cccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CCCEEEEEecCccccchhHHHHHhccC
Confidence 99987532 44 333 46899999997 899999999999998764 7999999999999 5689999999875
Q ss_pred CccccEEEEecccCCCCCc--ceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhccc----
Q 020439 188 LENVEAIFGLHVSSLFPVG--TVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA---- 261 (326)
Q Consensus 188 ~~~~d~~i~~~~~~~~~~g--~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~---- 261 (326)
++ .|+++.. +|++ .+. .+++|..+++|+++|+++|++.|+.|.||+..+++++.+|++...+..
T Consensus 161 ~~-~d~~i~~-----~~~~~~~i~----~~~~G~~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~ 230 (394)
T PRK08651 161 VT-PDYVIVG-----EPSGLDNIC----IGHRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSKYE 230 (394)
T ss_pred CC-CCEEEEe-----cCCCCCceE----EecccEEEEEEEEEEeccccCCCccccCHHHHHHHHHHHHHHHHHhhhcccc
Confidence 43 5666643 2333 232 346899999999999999999999999999999999999976532111
Q ss_pred --CC-CCCceEEEEE--EEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeee
Q 020439 262 --DP-LDSQVLTVAK--FEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYS 324 (326)
Q Consensus 262 --~~-~~~~t~~i~~--i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 324 (326)
.+ ....+++++. ++||...|+||++|++.+|+|++|.++.+++.++|++++++.+.+++++++
T Consensus 231 ~~~~~~~~~~~~ig~~~i~gG~~~nviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~~~~~~~ 298 (394)
T PRK08651 231 YDDERGAKPTVTLGGPTVEGGTKTNIVPGYCAFSIDRRLIPEETAEEVRDELEALLDEVAPELGIEVE 298 (394)
T ss_pred ccccccCCCceeecceeeeCCCCCCccCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhccCCCee
Confidence 11 2346788888 999999999999999999999999999999999999999999888885544
No 30
>PRK07473 carboxypeptidase; Provisional
Probab=100.00 E-value=1.9e-40 Score=311.43 Aligned_cols=259 Identities=15% Similarity=0.103 Sum_probs=207.5
Q ss_pred HHHHHHHHHhhhCCCCCcchH---HHHHHHHHHHhhcCCCeeecc---c-CceEEEEECCC--CCcEEEEEeecCcccCc
Q 020439 50 YWMVNIRRKIHENPELGFQEF---ETSKLIRAELDQMGIPYKFPV---A-VTGVVGYIGTG--QPPFVALRADMDALAME 120 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e~---~~~~~l~~~l~~~G~~~~~~~---~-~~nvia~~~~~--~~~~I~l~~H~DtVp~~ 120 (326)
+++++++++|++|||+|++|. ++++|+.++|+++|++++... + ..|+++++++. .+|+|+|+|||||||+.
T Consensus 11 ~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~gH~DtV~~~ 90 (376)
T PRK07473 11 EAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERIPGRQGFGDCVRARFPHPRQGEPGILIAGHMDTVHPV 90 (376)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCeEEEEeCCCCCCCCeEEEEecCCCCCCC
Confidence 789999999999999999885 677899999999999988632 2 24789988642 35899999999999764
Q ss_pred C-CCCCcccCccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccccEEE
Q 020439 121 E-SVEWEHKSKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIF 195 (326)
Q Consensus 121 ~-~~~w~~~~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i 195 (326)
. ...+|| .++||++||||+ ||+++++|+|+++|++.+..++.+|.|+|++||| ++.|++.+++++.. ..|+++
T Consensus 91 ~~~~~~p~-~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~g~~~~~~~~~~-~~d~~i 168 (376)
T PRK07473 91 GTLEKLPW-RREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTPDEEVGTPSTRDLIEAEAA-RNKYVL 168 (376)
T ss_pred CCccCCCe-EEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcccCCccHHHHHHHhhc-cCCEEE
Confidence 3 112244 367899999995 9999999999999998876778899999999999 77899999987543 457777
Q ss_pred EecccCCCCCcceeeccccccccceEEEEEEEecCCCcC-CCCCCCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEE
Q 020439 196 GLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAA-IPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKF 274 (326)
Q Consensus 196 ~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss-~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i 274 (326)
+. +|+...+.+. .+++|..+++|+++|+++|++ .|+.|+|||..+++++.+|+++.. ...++|++.|
T Consensus 169 v~--ep~~~~~~v~----~~~~G~~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~~~~~------~~~~~~vg~i 236 (376)
T PRK07473 169 VP--EPGRPDNGVV----TGRYAIARFNLEATGRPSHAGATLSEGRSAIREMARQILAIDAMTT------EDCTFSVGIV 236 (376)
T ss_pred Ee--CCCCCCCCEE----EECeeeEEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHHHhcC------CCceEeEeeE
Confidence 64 2222222232 356899999999999999987 799999999999999999988642 2368999999
Q ss_pred EcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeee
Q 020439 275 EGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 275 ~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
+||...|+||++|+++++.|....++.+++.+++.+.++ ...+++++|
T Consensus 237 ~gg~~~n~VP~~~~~~~d~r~~~~~~~~~~~~~i~~~~~---~~~~~~~~~ 284 (376)
T PRK07473 237 HGGQWVNCVATTCTGEALSMAKRQADLDRGVARMLALSG---TEDDVTFTV 284 (376)
T ss_pred EcCCCCcCCCCceEEEEEEEeCCHhHHHHHHHHHHHhhC---cCCCeEEEE
Confidence 999999999999999999998887777777666655544 235566665
No 31
>PRK09104 hypothetical protein; Validated
Probab=100.00 E-value=1e-40 Score=321.79 Aligned_cols=275 Identities=14% Similarity=0.139 Sum_probs=219.1
Q ss_pred cHHHHHhhcCchhHHHHHHHHHHhhhCCCCCcch------HHHHHHHHHHHhhcCCCeee--cccCceEEEEECCC--CC
Q 020439 36 PVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQE------FETSKLIRAELDQMGIPYKF--PVAVTGVVGYIGTG--QP 105 (326)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~~e------~~~~~~l~~~l~~~G~~~~~--~~~~~nvia~~~~~--~~ 105 (326)
..++.++++.++ +++++++++|++|||+|+++ .++++||.++|+++||+++. ..+++|++++++++ .+
T Consensus 5 ~~~~~~~~~~~~--~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~l~a~~~g~~~~~ 82 (464)
T PRK09104 5 LDPVLDHIDANL--DASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDTPGHPMVVAHHEGPTGDA 82 (464)
T ss_pred HHHHHHHHHHhH--HHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCC
Confidence 457889999988 99999999999999999764 68999999999999999875 33567999999642 35
Q ss_pred cEEEEEeecCcccCcCCCCCcccC----ccCC-----eeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q 020439 106 PFVALRADMDALAMEESVEWEHKS----KVPG-----KMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAE 173 (326)
Q Consensus 106 ~~I~l~~H~DtVp~~~~~~w~~~~----~~~g-----~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dE 173 (326)
|+|+|+||+||||+++.+.|++++ +++| ++||||+ ||+++++|+|+++|++.+..++++|.|+|++||
T Consensus 83 ~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~~~~~i~~~~~~dE 162 (464)
T PRK09104 83 PHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVRVTILFEGEE 162 (464)
T ss_pred CEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 899999999999998777897653 3343 5999997 899999999999999877678899999999999
Q ss_pred C-CcccHHHHHHccC-CccccEEEEecccCCCCCcceeeccccccccceEEEEEEEe--cCCCcCC-CCCCCcHHHHHHH
Q 020439 174 E-GGGGAKKMLDAGA-LENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVING--KGGHAAI-PQHTIDPIVAASN 248 (326)
Q Consensus 174 E-~~~G~~~l~~~g~-~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G--~~~Hss~-p~~g~NAi~~~~~ 248 (326)
| ++.|.++++.+.. .-..|++|+.+ ++...+.. .....+++|..+++++++| +++|+|. |+.|.||+..+++
T Consensus 163 E~g~~g~~~~l~~~~~~~~~d~~iv~E--~~~~~~~~-~~i~~~~kG~~~~~l~v~g~~~~~Hss~~~~~g~nai~~~~~ 239 (464)
T PRK09104 163 ESGSPSLVPFLEANAEELKADVALVCD--TGMWDRET-PAITTSLRGLVGEEVTITAADRDLHSGLFGGAAANPIRVLTR 239 (464)
T ss_pred ccCCccHHHHHHhhHHhcCCCEEEEeC--CCCCCCCC-eEEEeecCCeEEEEEEEEeCCCCccccccCCccCCHHHHHHH
Confidence 9 6788888877532 11357776543 22111100 0123567999999999999 6899995 6889999999999
Q ss_pred HHHHHhHhhhcc------------------------------------cCC------------CCCceEEEEEEEcCC--
Q 020439 249 VIVSLQHLVSRE------------------------------------ADP------------LDSQVLTVAKFEGGG-- 278 (326)
Q Consensus 249 ~i~~l~~~~~~~------------------------------------~~~------------~~~~t~~i~~i~gG~-- 278 (326)
++.+|++...+. ..+ ...+++|++.|+||.
T Consensus 240 ~l~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~~ 319 (464)
T PRK09104 240 ILAGLHDETGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGRSVLEQIWSRPTCEINGIWGGYTG 319 (464)
T ss_pred HHHhccCCCCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccHHHHHHHhhCCeEEEeccccCCCC
Confidence 999987531100 000 013689999999985
Q ss_pred --ccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHH
Q 020439 279 --AFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLI 315 (326)
Q Consensus 279 --~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~ 315 (326)
..|+||++|++++|+|++|+++.+++.++|++++++.
T Consensus 320 ~~~~nvvP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~~ 358 (464)
T PRK09104 320 EGFKTVIPAEASAKVSFRLVGGQDPAKIREAFRAYVRAR 358 (464)
T ss_pred CCCccEecCceEEEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 4699999999999999999999999999999998763
No 32
>PRK08262 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-41 Score=325.75 Aligned_cols=261 Identities=15% Similarity=0.156 Sum_probs=206.2
Q ss_pred HHHHHHHHHhhhCCCCCcchH---------HHHHHHHHHHhhcCCCeeec-ccCceEEEEECC-CCC-cEEEEEeecCcc
Q 020439 50 YWMVNIRRKIHENPELGFQEF---------ETSKLIRAELDQMGIPYKFP-VAVTGVVGYIGT-GQP-PFVALRADMDAL 117 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e~---------~~~~~l~~~l~~~G~~~~~~-~~~~nvia~~~~-~~~-~~I~l~~H~DtV 117 (326)
+++++++++|++|||+|++|. ++++|+.++|+.+|++++.. .+..|+++.+.+ +++ |+|+|+||+|||
T Consensus 44 ~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~~~~vv~~~~g~~~~~~~ill~gH~DvV 123 (486)
T PRK08262 44 DAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVGGHSLLYTWKGSDPSLKPIVLMAHQDVV 123 (486)
T ss_pred HHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEECCccEEEEEECCCCCCCeEEEECccccc
Confidence 899999999999999998763 48999999999999987652 223578777743 333 899999999999
Q ss_pred cCcCC--CCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccC
Q 020439 118 AMEES--VEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGA 187 (326)
Q Consensus 118 p~~~~--~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~ 187 (326)
|+++. ..|+++ .++||++||||+ ||+++++|.|++.|++.+..++++|.|+|++||| ++.|++++++...
T Consensus 124 p~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~~l~ 203 (486)
T PRK08262 124 PVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAELLK 203 (486)
T ss_pred CCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCCcCHHHHHHHHH
Confidence 98753 469543 357899999995 9999999999999998877889999999999999 6779998876311
Q ss_pred C--ccccEEE------Eecc--cCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhh
Q 020439 188 L--ENVEAIF------GLHV--SSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLV 257 (326)
Q Consensus 188 ~--~~~d~~i------~~~~--~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~ 257 (326)
. ...++++ ..+. ..+.|++. .+.+++|..+++|+++|+++|+|.|+. .||+..++++|.+|++..
T Consensus 204 ~~~~~~~~~~~~~~~i~~~~~~~~~~p~~~----i~~~~kG~~~~~i~v~G~~~Hss~p~~-~nai~~l~~~l~~l~~~~ 278 (486)
T PRK08262 204 ERGVRLAFVLDEGGAITEGVLPGVKKPVAL----IGVAEKGYATLELTARATGGHSSMPPR-QTAIGRLARALTRLEDNP 278 (486)
T ss_pred HhcCCEEEEEeCCceecccccCCCCceEEe----eEEeeeeeEEEEEEEecCCCCCCCCCC-CCHHHHHHHHHHHHhhCC
Confidence 0 1233432 1111 11234333 245578999999999999999999999 999999999999997631
Q ss_pred hcc--------------------------------------------cCCCCCceEEEEEEEcCCccccccCeEEEEEEE
Q 020439 258 SRE--------------------------------------------ADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTF 293 (326)
Q Consensus 258 ~~~--------------------------------------------~~~~~~~t~~i~~i~gG~~~n~iP~~~~~~~di 293 (326)
.+. ..+...+|+|++.|+||...|+||++|++++|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~I~gG~~~NvIP~~a~~~~di 358 (486)
T PRK08262 279 LPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAMLRTTTAPTMLKGSPKDNVLPQRATATVNF 358 (486)
T ss_pred CCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhcCCccceeEEeeeeeeEEecCCccccCCCccEEEEEE
Confidence 000 001235789999999999999999999999999
Q ss_pred EccChhhHHHHHHHHHHHHHHH
Q 020439 294 RAFSKESIIQLKQRIEEVHLLI 315 (326)
Q Consensus 294 R~~~~~~~~~~~~~i~~~~~~~ 315 (326)
|++|+++.+++.++|++++++.
T Consensus 359 R~~p~~~~~~i~~~i~~~~~~~ 380 (486)
T PRK08262 359 RILPGDSVESVLAHVRRAVADD 380 (486)
T ss_pred EeCCCCCHHHHHHHHHHHhccC
Confidence 9999999999999999988763
No 33
>PRK08737 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=2.3e-40 Score=309.23 Aligned_cols=241 Identities=16% Similarity=0.153 Sum_probs=197.8
Q ss_pred HHHHHHHHHhhhCCCCC----cchHHHHHHHHHHHhhcCCCeeec---ccCceEEEEECCCCCcEEEEEeecCcccCcCC
Q 020439 50 YWMVNIRRKIHENPELG----FQEFETSKLIRAELDQMGIPYKFP---VAVTGVVGYIGTGQPPFVALRADMDALAMEES 122 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s----~~e~~~~~~l~~~l~~~G~~~~~~---~~~~nvia~~~~~~~~~I~l~~H~DtVp~~~~ 122 (326)
+++++++++|++|||++ ++|.++++|+.++|+ |++++.. .++.|+++..+ .|+|+|+||+||||+++
T Consensus 6 ~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~~~~~~nli~~~g---~~~lll~gH~DtVp~~~- 79 (364)
T PRK08737 6 ESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHGAGAVSLYAVRG---TPKYLFNVHLDTVPDSP- 79 (364)
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecCCCCceEEEEEcC---CCeEEEEeeeCCCCCCC-
Confidence 78999999999999985 357899999999997 8987764 34569998642 27899999999999864
Q ss_pred CCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-Cc-ccHHHHHHccCCccccE
Q 020439 123 VEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GG-GGAKKMLDAGALENVEA 193 (326)
Q Consensus 123 ~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~-~G~~~l~~~g~~~~~d~ 193 (326)
.|+++ .++||+|||||+ |+++|++++|++. +.++|.|+|++||| ++ .|++.+++++. +.|+
T Consensus 80 -~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v~~~~~~dEE~g~~~g~~~~~~~~~--~~~~ 149 (364)
T PRK08737 80 -HWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGDAAFLFSSDEEANDPRCVAAFLARGI--PYEA 149 (364)
T ss_pred -CCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCCEEEEEEcccccCchhhHHHHHHhCC--CCCE
Confidence 68654 356899999997 8999999999863 35689999999999 55 68899998864 4677
Q ss_pred EEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCC-CCCCcHHHHHHHHHHHHhHhhhcc----cCCCCCce
Q 020439 194 IFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIP-QHTIDPIVAASNVIVSLQHLVSRE----ADPLDSQV 268 (326)
Q Consensus 194 ~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p-~~g~NAi~~~~~~i~~l~~~~~~~----~~~~~~~t 268 (326)
++. ++|++.. ...+++|..+++|+++|+++|+|.| +.|+|||..+++++.++.+..... .+.....+
T Consensus 150 ~iv-----~Ept~~~---~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~~l~~~~~~~~~~~~~~~~~~~~~t 221 (364)
T PRK08737 150 VLV-----AEPTMSE---AVLAHRGISSVLMRFAGRAGHASGKQDPSASALHQAMRWGGQALDHVESLAHARFGGLTGLR 221 (364)
T ss_pred EEE-----cCCCCce---eEEecceeEEEEEEEEeeccccCCCcccCCCHHHHHHHHHHHHHHHHHhhhhhccCCCCCCc
Confidence 765 2455432 2356899999999999999999988 589999999999998876543211 12233569
Q ss_pred EEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHH
Q 020439 269 LTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLL 314 (326)
Q Consensus 269 ~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~ 314 (326)
+|++.|+||...|+||++|++++|+|+.|.++.+++.++|+++++.
T Consensus 222 ~~vg~i~GG~~~NvVP~~a~~~~d~R~~p~~~~e~v~~~i~~~~~~ 267 (364)
T PRK08737 222 FNIGRVEGGIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGFAEP 267 (364)
T ss_pred eEEeeEecCCCCCcCCCceEEEEEeeeCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877665
No 34
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=100.00 E-value=6e-40 Score=305.17 Aligned_cols=236 Identities=13% Similarity=0.077 Sum_probs=198.1
Q ss_pred HHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCCCCcEEEEEeecCcccCcCCCCCcccC
Q 020439 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEHKS 129 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~I~l~~H~DtVp~~~~~~w~~~~ 129 (326)
+++++++++|++|||+|++|.++++||.++|+++|++++..+ ..|++. .+ +|+|+|+||+||||. |....
T Consensus 10 ~~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~-~~~~~~--~g--~~~lll~gH~DtVp~-----~~~~~ 79 (346)
T PRK00466 10 QKAKELLLDLLSIYTPSGNETNATKFFEKISNELNLKLEILP-DSNSFI--LG--EGDILLASHVDTVPG-----YIEPK 79 (346)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEec-CCCcEe--cC--CCeEEEEeccccCCC-----CCCce
Confidence 788999999999999999999999999999999999988754 346553 22 378999999999994 22235
Q ss_pred ccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccccEEEEecccCCCCC
Q 020439 130 KVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLHVSSLFPV 205 (326)
Q Consensus 130 ~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~~~~~~~~ 205 (326)
++||+|||||+ ||+++++++|+++|++.+ .++.|+|++||| ++.|++++++++. ++|+++.. +|+
T Consensus 80 ~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~~G~~~l~~~~~--~~d~~i~~-----ep~ 148 (346)
T PRK00466 80 IEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADEESTSIGAKELVSKGF--NFKHIIVG-----EPS 148 (346)
T ss_pred eeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCcccCCccHHHHHhcCC--CCCEEEEc-----CCC
Confidence 67899999997 899999999999998764 358999999999 6689999999864 46777652 355
Q ss_pred cceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcCCccccccC
Q 020439 206 GTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGGGAFNIIPD 285 (326)
Q Consensus 206 g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG~~~n~iP~ 285 (326)
+...+ ..+++|..+++|+++|+++|+|.|+ .|||..+++++.++.+.. .+....++|++.|+||...|+||+
T Consensus 149 ~~~~i--~~~~kG~~~~~i~v~G~~~Has~p~--~nAi~~~~~~l~~l~~~~----~~~~~~t~~~~~i~gG~~~NvvP~ 220 (346)
T PRK00466 149 NGTDI--VVEYRGSIQLDIMCEGTPEHSSSAK--SNLIVDISKKIIEVYKQP----ENYDKPSIVPTIIRAGESYNVTPA 220 (346)
T ss_pred CCCce--EEEeeEEEEEEEEEEeeccccCCCC--cCHHHHHHHHHHHHHhcc----ccCCCCcceeeEEecCCcCcccCC
Confidence 43212 3457899999999999999999886 599999999999987642 223357899999999999999999
Q ss_pred eEEEEEEEEccChhhHHHHHHHHHHHHHH
Q 020439 286 SVTIGGTFRAFSKESIIQLKQRIEEVHLL 314 (326)
Q Consensus 286 ~~~~~~diR~~~~~~~~~~~~~i~~~~~~ 314 (326)
+|++.+|+|+.|.++.+++.++|++.+++
T Consensus 221 ~a~~~~diR~~p~~~~~~v~~~i~~~~~~ 249 (346)
T PRK00466 221 KLYLHFDVRYAINNKRDDLISEIKDKFQE 249 (346)
T ss_pred ceEEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999988875
No 35
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=100.00 E-value=9.2e-40 Score=304.10 Aligned_cols=241 Identities=14% Similarity=0.129 Sum_probs=199.0
Q ss_pred HHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCCCCcEEEEEeecCcccCcCCCCCcccC
Q 020439 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEHKS 129 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~I~l~~H~DtVp~~~~~~w~~~~ 129 (326)
+++++++++|++|||+|++|.++++|+.++|+++||+++.+. ..|++++++++ +|+|+|+||+||||... ++ .
T Consensus 6 ~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~-~~n~i~~~~~~-~~~l~~~~H~DtVp~~~----p~-~ 78 (348)
T PRK04443 6 LEARELLKGLVEIPSPSGEEAAAAEFLVEFMESHGREAWVDE-AGNARGPAGDG-PPLVLLLGHIDTVPGDI----PV-R 78 (348)
T ss_pred HHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHcCCEEEEcC-CCcEEEEcCCC-CCEEEEEeeccccCCCC----Cc-E
Confidence 789999999999999999999999999999999999987653 46899998544 48999999999999532 23 3
Q ss_pred ccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccccEEEEecccCCCCC
Q 020439 130 KVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLHVSSLFPV 205 (326)
Q Consensus 130 ~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~~~~~~~~ 205 (326)
++||++||||+ ||+++++++|+++| +.+++++|.|++++||| ++.|...++.++. .+|+++.. +|+
T Consensus 79 ~~~g~iyGrG~~D~Kg~~aa~l~A~~~l---~~~~~~~i~~~~~~dEE~g~~~~~~~l~~~~--~~d~~iv~-----Ept 148 (348)
T PRK04443 79 VEDGVLWGRGSVDAKGPLAAFAAAAARL---EALVRARVSFVGAVEEEAPSSGGARLVADRE--RPDAVIIG-----EPS 148 (348)
T ss_pred eeCCeEEeecccccccHHHHHHHHHHHh---cccCCCCEEEEEEcccccCChhHHHHHHhcc--CCCEEEEe-----CCC
Confidence 56899999997 89999999999998 34688999999999999 5666666666654 46777753 344
Q ss_pred cceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhc---ccCCCCCceEEEEEEEcCCcccc
Q 020439 206 GTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSR---EADPLDSQVLTVAKFEGGGAFNI 282 (326)
Q Consensus 206 g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~---~~~~~~~~t~~i~~i~gG~~~n~ 282 (326)
+... .+.+++|..+++++++|+++|||.| |.||+..+++++..|+++... ....++..++|++.|+ ...|+
T Consensus 149 ~~~~--i~~~~kG~~~~~l~~~G~~~Hss~~--g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~i~--~~~n~ 222 (348)
T PRK04443 149 GWDG--ITLGYKGRLLVTYVATSESFHSAGP--EPNAAEDAIEWWLAVEAWFEANDGRERVFDQVTPKLVDFD--SSSDG 222 (348)
T ss_pred Cccc--eeeecccEEEEEEEEEeCCCccCCC--CCCHHHHHHHHHHHHHHHHhcCccccccccccceeeeEEe--cCCCC
Confidence 4211 2346789999999999999999987 799999999999999876431 1112455788999988 35699
Q ss_pred ccCeEEEEEEEEccChhhHHHHHHHHHHHHH
Q 020439 283 IPDSVTIGGTFRAFSKESIIQLKQRIEEVHL 313 (326)
Q Consensus 283 iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 313 (326)
||++|++.+|+|++|.++.+++.++|++++.
T Consensus 223 iP~~~~~~~d~R~~p~~~~~~i~~~i~~~~~ 253 (348)
T PRK04443 223 LTVEAEMTVGLRLPPGLSPEEAREILDALLP 253 (348)
T ss_pred CCceEEEEEEEccCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999873
No 36
>PRK08652 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=7.3e-40 Score=304.64 Aligned_cols=249 Identities=16% Similarity=0.140 Sum_probs=202.4
Q ss_pred HHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeeccc--CceEEEEECCCCCcEEEEEeecCcccCcCCCCCcc
Q 020439 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVA--VTGVVGYIGTGQPPFVALRADMDALAMEESVEWEH 127 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~--~~nvia~~~~~~~~~I~l~~H~DtVp~~~~~~w~~ 127 (326)
+++++++++|++|||+|++|.++++||.++|+++|++++.... ..|+++ + ++|+|+|+|||||||....
T Consensus 2 ~~~~~~~~~lv~ips~s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~---~-~~~~i~l~~H~D~vp~~~~----- 72 (347)
T PRK08652 2 ERAKELLKQLVKIPSPSGQEDEIALHIMEFLESLGYDVHIESDGEVINIVV---N-SKAELFVEVHYDTVPVRAE----- 72 (347)
T ss_pred hhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCEEEEEecCceeEEEc---C-CCCEEEEEccccccCCCCC-----
Confidence 6789999999999999999999999999999999999876432 356665 2 3489999999999997531
Q ss_pred cCccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccccEEEEecccCCC
Q 020439 128 KSKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLHVSSLF 203 (326)
Q Consensus 128 ~~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~~~~~~ 203 (326)
+..+||++||||+ |++++++|+|++.|.+. .++++|.|+|++||| ++.|+++++++. ..|+++..+
T Consensus 73 ~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~dEE~g~~G~~~~~~~~---~~d~~i~~e----- 142 (347)
T PRK08652 73 FFVDGVYVYGTGACDAKGGVAAILLALEELGKE--FEDLNVGIAFVSDEEEGGRGSALFAERY---RPKMAIVLE----- 142 (347)
T ss_pred CEEECCEEEeccchhhhHHHHHHHHHHHHHhhc--ccCCCEEEEEecCcccCChhHHHHHHhc---CCCEEEEec-----
Confidence 1256899999997 89999999999999754 346799999999999 678999998762 236666542
Q ss_pred CCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcCCccccc
Q 020439 204 PVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGGGAFNII 283 (326)
Q Consensus 204 ~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG~~~n~i 283 (326)
|++. ....+++|..+++|+++|+++|++.|+.|.||+..+++++.+|+++......... ++++++.++||...|+|
T Consensus 143 p~~~---~i~~~~~g~~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~i~~l~~~~~~~~~~~~-~~~~~~~i~gg~~~nvi 218 (347)
T PRK08652 143 PTDL---KVAIAHYGNLEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKELLKALGKYFD-PHIGIQEIIGGSPEYSI 218 (347)
T ss_pred CCCC---ceeeecccEEEEEEEEEeeecccCCCCcCcCHHHHHHHHHHHHHHHHHhhhcccC-CCCcceeeecCCCCCcc
Confidence 2221 1234578999999999999999999999999999999999999876532211112 36778889999999999
Q ss_pred cCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeee
Q 020439 284 PDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 284 P~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
|++|++.+|+|++|.++.+++.+++++.+++ ++.+++|
T Consensus 219 P~~~~~~~diR~~~~~~~~~v~~~i~~~~~~----~~v~~~~ 256 (347)
T PRK08652 219 PALCRLRLDARIPPEVEVEDVLDEIDPILDE----YTVKYEY 256 (347)
T ss_pred CCcEEEEEEEEcCCCCCHHHHHHHHHHHHHh----cCceEEE
Confidence 9999999999999999999999999988854 4454443
No 37
>PRK07906 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-40 Score=314.51 Aligned_cols=257 Identities=16% Similarity=0.205 Sum_probs=200.6
Q ss_pred HHHHHHhhhCCCCC------cchHHHHHHHHHHHhhcCCCeeecc---cCceEEEEECCC-C-CcEEEEEeecCcccCcC
Q 020439 53 VNIRRKIHENPELG------FQEFETSKLIRAELDQMGIPYKFPV---AVTGVVGYIGTG-Q-PPFVALRADMDALAMEE 121 (326)
Q Consensus 53 i~~l~~l~~ips~s------~~e~~~~~~l~~~l~~~G~~~~~~~---~~~nvia~~~~~-~-~~~I~l~~H~DtVp~~~ 121 (326)
++++++|++|||++ ++|.++++|+.++|+++|++++..+ +++|+++++++. + .|+|+|+||+||||+++
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~ 81 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSRPALLVHGHLDVVPAEA 81 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecCCCceEEEEEEeCCCCCCCcEEEEcccccCCCCc
Confidence 67899999999999 6799999999999999999987642 568999998543 2 47999999999999865
Q ss_pred CCCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-Cc-ccHHHHHHcc--CCcc
Q 020439 122 SVEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GG-GGAKKMLDAG--ALEN 190 (326)
Q Consensus 122 ~~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~-~G~~~l~~~g--~~~~ 190 (326)
..|+++ .++||++||||+ |++++++|+|+++|++.+..++++|.|+|++||| ++ .|++.++++. .+..
T Consensus 82 -~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~~~~~~~ 160 (426)
T PRK07906 82 -ADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFAFVADEEAGGTYGAHWLVDNHPELFEG 160 (426)
T ss_pred -ccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEecCcccchhhhHHHHHHHHHHhccc
Confidence 469764 356899999997 8999999999999999888889999999999999 44 5999998753 2233
Q ss_pred ccEEEEecccC--CCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhcc--------
Q 020439 191 VEAIFGLHVSS--LFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSRE-------- 260 (326)
Q Consensus 191 ~d~~i~~~~~~--~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~-------- 260 (326)
.++++...... ..+..........+++|..+++|+++|+++|+|.|+. .|||..++++|.+|+++..+.
T Consensus 161 ~~~ii~e~~~~~~~~~~~~~~~~i~~~~kG~~~~~v~v~G~~~Hss~p~~-~nAi~~~~~~l~~l~~~~~~~~~~~~~~~ 239 (426)
T PRK07906 161 VTEAISEVGGFSLTVPGRDRLYLIETAEKGLAWMRLTARGRAGHGSMVND-DNAVTRLAEAVARIGRHRWPLVLTPTVRA 239 (426)
T ss_pred hheEEECCCceeeccCCCccEEEEEeccceEEEEEEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHhCCCCcccCHHHHH
Confidence 34455321100 0011100112345679999999999999999999874 999999999999997542110
Q ss_pred ------------cCCC-------------------CCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHH
Q 020439 261 ------------ADPL-------------------DSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIE 309 (326)
Q Consensus 261 ------------~~~~-------------------~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~ 309 (326)
.++. ..+|+|++.|+||...|+||++|++++|+|++|+++ +++.+.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~t~~~~~i~gG~~~NviP~~~~~~~d~R~~p~~~-~~i~~~i~ 318 (426)
T PRK07906 240 FLDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKAGYKVNVIPGTAEAVVDGRFLPGRE-EEFLATVD 318 (426)
T ss_pred HHHHhhhhcCcccCcccHHHHHHHHhhcCcchhhhhcccccceeEeccCccccCCCceEEEEEEeECCCCc-HHHHHHHH
Confidence 0010 136999999999999999999999999999999886 66777666
Q ss_pred HHH
Q 020439 310 EVH 312 (326)
Q Consensus 310 ~~~ 312 (326)
+++
T Consensus 319 ~~~ 321 (426)
T PRK07906 319 ELL 321 (426)
T ss_pred HHh
Confidence 654
No 38
>PRK07079 hypothetical protein; Provisional
Probab=100.00 E-value=3.2e-39 Score=311.60 Aligned_cols=274 Identities=12% Similarity=0.056 Sum_probs=207.4
Q ss_pred cccHHHHHhhcCchhHHHHHHHHHHhhhCCCCCcc---hHHHHHHHH----HHHhhcCCCeeec-----ccCceEEEEEC
Q 020439 34 QIPVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQ---EFETSKLIR----AELDQMGIPYKFP-----VAVTGVVGYIG 101 (326)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~~---e~~~~~~l~----~~l~~~G~~~~~~-----~~~~nvia~~~ 101 (326)
...+++.++++. +++++++++|++|||+|++ +.++++|+. ++|+++||+++.. .+++|+++.++
T Consensus 5 ~~~~~~~~~~~~----~~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~~~~~~vva~~~ 80 (469)
T PRK07079 5 AAIARAAAYFDS----GAFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPVAGGGPFLIAERI 80 (469)
T ss_pred HHHHHHHHhhcc----HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCEEEEEeC
Confidence 344566666654 5799999999999999974 356777764 5899999998752 24679999986
Q ss_pred CC-CCcEEEEEeecCcccCcCCCCCcc--c----CccCCeeecCCc---hHHHHHHHHHHHHHHhc-cCCCCceEEEEEe
Q 020439 102 TG-QPPFVALRADMDALAMEESVEWEH--K----SKVPGKMHACGH---DAHVAMLLGAAKMLQVF-RHEIKGTIVLVFQ 170 (326)
Q Consensus 102 ~~-~~~~I~l~~H~DtVp~~~~~~w~~--~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~-~~~~~~~i~~~~~ 170 (326)
++ ++|+|+|+||+||||+++ +.|+. + .++||++||||+ ||+++++|+|+++|.+. +.+++++|.|+++
T Consensus 81 ~~~~~~~lll~gH~DvVp~~~-~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~~~~i~~~~~ 159 (469)
T PRK07079 81 EDDALPTVLIYGHGDVVRGYD-EQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAARGGRLGFNVKLLIE 159 (469)
T ss_pred CCCCCCEEEEEcccCCCCCCh-HHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 53 458999999999999753 56862 3 467999999997 99999999999998654 4678899999999
Q ss_pred cCCC-CcccHHHHHHccC-CccccEEEEecccCCCCCcceeeccccccccceEEEEEEEec--CCCcCC-CCCCCcHHHH
Q 020439 171 PAEE-GGGGAKKMLDAGA-LENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGK--GGHAAI-PQHTIDPIVA 245 (326)
Q Consensus 171 ~dEE-~~~G~~~l~~~g~-~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~--~~Hss~-p~~g~NAi~~ 245 (326)
+||| ++.|+++++++.. .-..|++|+..+....+... ....+++|..+++|+++|+ +.||+. ...+.||+..
T Consensus 160 ~dEE~g~~G~~~l~~~~~~~~~~d~~iv~e~~~~~~~~~---~i~~g~kG~~~~~v~v~G~~~~~hs~~~~g~~~nai~~ 236 (469)
T PRK07079 160 MGEEIGSPGLAEVCRQHREALAADVLIASDGPRLSAERP---TLFLGSRGAVNFRLRVNLRDGAHHSGNWGGLLRNPGTV 236 (469)
T ss_pred CccccCCccHHHHHHHhHHhcCCCEEEEeCCCccCCCCe---EEEEecceEEEEEEEEeeCCCCCCCCccccccCCHHHH
Confidence 9999 7789999998742 11367777542211111111 1245689999999999998 446663 2334799999
Q ss_pred HHHHHHHHhHhhhcc------------------------c--------------------CCCCCceEEEEEEEcCC---
Q 020439 246 ASNVIVSLQHLVSRE------------------------A--------------------DPLDSQVLTVAKFEGGG--- 278 (326)
Q Consensus 246 ~~~~i~~l~~~~~~~------------------------~--------------------~~~~~~t~~i~~i~gG~--- 278 (326)
++++|.++.+...+. . .....+|+|++.|+||.
T Consensus 237 l~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nv~~i~gG~~~~ 316 (469)
T PRK07079 237 LAHAIASLVDARGRIQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTPAERVFGWNTLEVLAFKTGNPDA 316 (469)
T ss_pred HHHHHHHhCCCCCCEecCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCHHHHHhhCCceEEEeeecCCCCC
Confidence 999999985421000 0 00123589999999994
Q ss_pred ccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHH
Q 020439 279 AFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLI 315 (326)
Q Consensus 279 ~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~ 315 (326)
..|+||++|++++|+|++|+++.+++.++|++++++.
T Consensus 317 ~~NvVP~~a~~~vdiR~~P~~~~e~v~~~l~~~i~~~ 353 (469)
T PRK07079 317 PVNAIPGSARAVCQLRFVVGTDWENLAPHLRAHLDAH 353 (469)
T ss_pred cceEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999998874
No 39
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=100.00 E-value=4.8e-39 Score=300.78 Aligned_cols=256 Identities=19% Similarity=0.189 Sum_probs=211.2
Q ss_pred HHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecc------cCceEEEEECCC-CCcEEEEEeecCcccCcCCCC
Q 020439 52 MVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPV------AVTGVVGYIGTG-QPPFVALRADMDALAMEESVE 124 (326)
Q Consensus 52 ~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~------~~~nvia~~~~~-~~~~I~l~~H~DtVp~~~~~~ 124 (326)
+.+++++|++|||+|++|.++++||.++|+++||+++... +++|+++.++++ ++|+|+|+||+||||+++ .
T Consensus 2 ~~~~~~~l~~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~l~~H~D~V~~~~--~ 79 (361)
T TIGR01883 2 LKKYFLELIQIDSESGKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTVKFDTIFFCGHMDTVPPGA--G 79 (361)
T ss_pred hHHHHHHHeecCCCCCcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCCCCCcEEEEeeccccCCCC--C
Confidence 5789999999999999999999999999999999987643 378999999554 348999999999999864 3
Q ss_pred CcccCccCCeeecCCc-------hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccccEEEE
Q 020439 125 WEHKSKVPGKMHACGH-------DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIFG 196 (326)
Q Consensus 125 w~~~~~~~g~l~GrG~-------k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~ 196 (326)
|. ..+++|++||||+ |++++++|++++.|++.+ .++++|.|+|++||| ++.|++.+.+.+. ..++++.
T Consensus 80 ~~-~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~~EE~g~~G~~~~~~~~~--~~~~~~~ 155 (361)
T TIGR01883 80 PE-PVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTVKEELGLIGMRLFDESKI--TAAYGYC 155 (361)
T ss_pred CC-ceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccCchhHhHhChhhc--CcceeEE
Confidence 43 2456799999994 699999999999998865 578899999999999 6679998876432 2455544
Q ss_pred ecccCCCCCcceeeccccccccceEEEEEEEecCCCcC-CCCCCCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEE
Q 020439 197 LHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAA-IPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFE 275 (326)
Q Consensus 197 ~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss-~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~ 275 (326)
. +++.+.+.+. ..++|..+++++++|+++|++ .|+.|+||+..+++++.+|+... .....+++++.++
T Consensus 156 ~--~~~~~~~~i~----~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~~~~-----~~~~~~~~i~~i~ 224 (361)
T TIGR01883 156 L--DAPGEVGNIQ----LAAPTQVKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRLGR-----IDEETTANIGSFS 224 (361)
T ss_pred E--eCCCCcceEE----ecCCceEEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhccccC-----CCCccccccceee
Confidence 3 3322334333 245799999999999999986 79999999999999999986431 1123678999999
Q ss_pred cCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeee
Q 020439 276 GGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYS 324 (326)
Q Consensus 276 gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 324 (326)
||...|+||++|++.+|+|+.|..+.+++.+++++.+++.+..++.+++
T Consensus 225 gG~~~nvVP~~~~~~~diR~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 273 (361)
T TIGR01883 225 GGVNTNIVQDEQLIVAEARSLSFRKAEAQVQTMRERFEQAAEKYGATLE 273 (361)
T ss_pred cCCccCccCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 9999999999999999999999999999999999999998888877654
No 40
>PRK06156 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=307.99 Aligned_cols=305 Identities=16% Similarity=0.161 Sum_probs=223.1
Q ss_pred hhhHHHHHHHHHHhhCCccccCCCCChhhcccccHHHHHhhcCchhHHHHHHHHHHhhhCCCCCc-----ch----HHHH
Q 020439 3 SSKLLSLLVTLYLLAPTSISSDVSLSPEELTQIPVKFLDFAKKPEIFYWMVNIRRKIHENPELGF-----QE----FETS 73 (326)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~-----~e----~~~~ 73 (326)
+||+|..+++|.-+|...+.....+.-+ |+...+. ..++++ +++++++++|++|||+++ +| .+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~--~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~ 78 (520)
T PRK06156 5 LKKLLAALLLLASLSAATQAAAATLTKP---QLDALLY-ARLKYG--AAAIESLRELVAFPTVRVEGVPQHENPEFIGFK 78 (520)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcccc---ccchhHH-hhhhhH--HHHHHHHHHhcCcCcccCCCCCccCCccHHHHH
Confidence 6788877777777776666666665522 2222222 222444 899999999999999984 23 3567
Q ss_pred HHHHHHHhhcCCCeeecccCceE-E-EEECCCCCcEEEEEeecCcccCcCCCCCcc-----cC----ccCCeeecCCc--
Q 020439 74 KLIRAELDQMGIPYKFPVAVTGV-V-GYIGTGQPPFVALRADMDALAMEESVEWEH-----KS----KVPGKMHACGH-- 140 (326)
Q Consensus 74 ~~l~~~l~~~G~~~~~~~~~~nv-i-a~~~~~~~~~I~l~~H~DtVp~~~~~~w~~-----~~----~~~g~l~GrG~-- 140 (326)
+||.++|+++|++++.. .|+ + +++++.+.|+|+|+|||||||++. ..|.+ ++ ++||++||||+
T Consensus 79 ~~l~~~l~~~G~~~~~~---~~~v~~~~~~g~~~~~l~l~gH~DvVp~~~-~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D 154 (520)
T PRK06156 79 KLLKSLARDFGLDYRNV---DNRVLEIGLGGSGSDKVGILTHADVVPANP-ELWVLDGTRLDPFKVTLVGDRLYGRGTED 154 (520)
T ss_pred HHHHHHHHHCCCeEEec---CCeEEEEEecCCCCCeEEEEEecCccCCCC-ccCccCCccCCCCceEEECCEEEEcCccc
Confidence 99999999999998643 344 4 666644448999999999999865 46876 43 46899999997
Q ss_pred -hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccccEEEEec-------ccCCC--------
Q 020439 141 -DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLH-------VSSLF-------- 203 (326)
Q Consensus 141 -k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~-------~~~~~-------- 203 (326)
|++++++++|+++|++.+.+++++|.|+|++||| ++.|++++++++.. .+..+..+ .+++.
T Consensus 155 ~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~~--~~~~~~~D~~~~~~~~E~~~~~~~i~~~ 232 (520)
T PRK06156 155 DKGAIVTALYAMKAIKDSGLPLARRIELLVYTTEETDGDPLKYYLERYTP--PDYNITLDAEYPVVTAEKGWGTIMATFP 232 (520)
T ss_pred chHHHHHHHHHHHHHHHcCCCCCceEEEEEecccccCchhHHHHHHhcCC--CCeEEeeCCCCceEEEecceEEEEEEec
Confidence 8999999999999998887888999999999999 77899999987542 22222111 11110
Q ss_pred ------------------CCcce------eec-----------------cccccccce---------EEEEEEEecCCCc
Q 020439 204 ------------------PVGTV------ASR-----------------PGPTLAAGG---------FFEAVINGKGGHA 233 (326)
Q Consensus 204 ------------------~~g~~------~~~-----------------~g~~~~G~~---------~~~i~~~G~~~Hs 233 (326)
..+.+ .+. ....++|.. |++|+++|+++|+
T Consensus 233 ~~~~~~~~~~l~~~~gG~~~n~ip~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHs 312 (520)
T PRK06156 233 KRAADGKGAEIVAMTGGAFANQIPQTAVATLSGGDPAALAAALQAAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHS 312 (520)
T ss_pred CcCCCCCceeEEEEEcCCcCCCCCCccEEEEecCCHHHHHHHHHHHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCC
Confidence 00000 000 001123444 8999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhHhhhc--------------------------ccCC-CCCceEEEEEEEcCCccccccCe
Q 020439 234 AIPQHTIDPIVAASNVIVSLQHLVSR--------------------------EADP-LDSQVLTVAKFEGGGAFNIIPDS 286 (326)
Q Consensus 234 s~p~~g~NAi~~~~~~i~~l~~~~~~--------------------------~~~~-~~~~t~~i~~i~gG~~~n~iP~~ 286 (326)
|.|+.|.|||..+++++.+|++.... ..++ .+..+++++.|++|. ++
T Consensus 313 S~P~~G~NAI~~aa~ii~~L~~~l~~~~~~~~~~~i~~~~~~~~~g~~~g~~~~~~~~g~~t~~~~~I~gg~------~~ 386 (520)
T PRK06156 313 STPESGVNPVTRLALFLQSLDGDLPHNHAADAARYINDLVGLDYLGEKFGVAYKDDFMGPLTLSPTVVGQDD------KG 386 (520)
T ss_pred CCCCCCccHHHHHHHHHHhccccccchhHHHHHHHHHHhhCCCCccCcCCccccCCCccCcEEeeeEEEEeC------Ce
Confidence 99999999999999999998752100 0011 245678899888876 58
Q ss_pred EEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeee
Q 020439 287 VTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 287 ~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
|++++|+|++|+++.+++.++|++.+++.+..++.+++|
T Consensus 387 ~~l~iDiR~~p~~~~eev~~~I~~~i~~~~~~~gv~ve~ 425 (520)
T PRK06156 387 TEVTVNLRRPVGKTPELLKGEIADALAAWQAKHQVALDI 425 (520)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHHHHHHhhcCceEEE
Confidence 999999999999999999999999999887777777665
No 41
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=100.00 E-value=2.1e-38 Score=305.05 Aligned_cols=263 Identities=14% Similarity=0.051 Sum_probs=200.8
Q ss_pred HHHhhcCchhHHHHHHHHHHhhhCCCCCc------------chHHHHHHHHHHHhhcCCCeeecccCceEEEEE-CCCCC
Q 020439 39 FLDFAKKPEIFYWMVNIRRKIHENPELGF------------QEFETSKLIRAELDQMGIPYKFPVAVTGVVGYI-GTGQP 105 (326)
Q Consensus 39 ~~~~~~~~~~~~~~i~~l~~l~~ips~s~------------~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~-~~~~~ 105 (326)
+.+++++++ +++++++++|++|||++. ++.++++++.++|+++||+++..+ |.++.+ .++++
T Consensus 4 ~~~~i~~~~--~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~---~~~~~~~~~~~~ 78 (466)
T TIGR01886 4 FKEEVEARK--DALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFD---NYAGHVEYGAGD 78 (466)
T ss_pred HHHHHHHhH--HHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEec---CCceeEEecCCC
Confidence 567788887 999999999999999974 346789999999999999988643 333333 22234
Q ss_pred cEEEEEeecCcccCcCCCCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-Ccc
Q 020439 106 PFVALRADMDALAMEESVEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGG 177 (326)
Q Consensus 106 ~~I~l~~H~DtVp~~~~~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~ 177 (326)
|+|+|+||+||||+++ .|.++ .++||+|||||+ ||+++++++|+++|++.+.+++++|.|++++||| ++.
T Consensus 79 ~~l~~~gH~DvVp~~~--~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~ 156 (466)
T TIGR01886 79 ERLGIIGHMDVVPAGE--GWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKIRFVVGTNEETGWV 156 (466)
T ss_pred CEEEEEeecccCCCCC--CCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCCCEEEEEECccccCcc
Confidence 8999999999999974 58754 357899999997 8999999999999999888899999999999999 678
Q ss_pred cHHHHHHccCCccccEEEEecccC----CCCCcce---------------------------------eec---------
Q 020439 178 GAKKMLDAGALENVEAIFGLHVSS----LFPVGTV---------------------------------ASR--------- 211 (326)
Q Consensus 178 G~~~l~~~g~~~~~d~~i~~~~~~----~~~~g~~---------------------------------~~~--------- 211 (326)
|++++++++. ..|+++....+. +++.... .+.
T Consensus 157 g~~~~~~~~~--~~d~~~~~d~~~~~~~ge~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~ 234 (466)
T TIGR01886 157 DMDYYFKHEE--TPDFGFSPDAEFPIINGEKGNFTLELSFKGDNKGDYVLDSFKAGLAENMVPQVARAVISGPDAEALKA 234 (466)
T ss_pred cHHHHHhcCc--CCCEEEECCCCceeEEEecceEEEEEEEecCCCCceeEEEEEcCCcCCccCCeeEEEEecCCHHHHHH
Confidence 9999998764 245543321100 0111100 000
Q ss_pred ---cccccccce---------EEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHH-------------hHhhhc-------
Q 020439 212 ---PGPTLAAGG---------FFEAVINGKGGHAAIPQHTIDPIVAASNVIVSL-------------QHLVSR------- 259 (326)
Q Consensus 212 ---~g~~~~G~~---------~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l-------------~~~~~~------- 259 (326)
....++|.. |++|+++|+++|+|.|+.|+|||..|++++..+ .++...
T Consensus 235 ~~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 314 (466)
T TIGR01886 235 AYESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFLALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKL 314 (466)
T ss_pred HHHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCcccC
Confidence 001244543 799999999999999999999999999988873 221100
Q ss_pred ---ccC-CCCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHH
Q 020439 260 ---EAD-PLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLL 314 (326)
Q Consensus 260 ---~~~-~~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~ 314 (326)
..+ ..+..|+|++.|+||.. | ++|++.+|+|++|+++.+++.++|++.++.
T Consensus 315 ~~~~~~~~~g~~S~nvgvI~gG~~-~---~~~~l~iD~R~~Pge~~eev~~eI~~~i~~ 369 (466)
T TIGR01886 315 GIAFHDELMGDLAMNAGMFDFDHA-N---KESKLLLNFRYPQGTSPETMQKQVLDKFGG 369 (466)
T ss_pred CCcccccCcCceEEEeEEEEEecC-C---ceEEEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 011 24567999999999965 4 899999999999999999999999998875
No 42
>PRK13381 peptidase T; Provisional
Probab=100.00 E-value=6.3e-38 Score=297.39 Aligned_cols=258 Identities=20% Similarity=0.171 Sum_probs=205.2
Q ss_pred HHHHHHHHhhhCCCCCc----------chHHHHHHHHHHHhhcCCCeeecccCceEEEEECCC-CC-cEEEEEeecCccc
Q 020439 51 WMVNIRRKIHENPELGF----------QEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG-QP-PFVALRADMDALA 118 (326)
Q Consensus 51 ~~i~~l~~l~~ips~s~----------~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~-~~-~~I~l~~H~DtVp 118 (326)
++++.++++++|||+|+ ++.++++||.++|+++|++....++++|++++++++ ++ |+|+|+||+||||
T Consensus 2 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~nvi~~~~g~~~~~~~lll~~H~D~Vp 81 (404)
T PRK13381 2 QLTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVIDEHAIVTAKLPGNTPGAPRIGFIAHLDTVD 81 (404)
T ss_pred cHHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEEcCCeEEEEEEecCCCCCCeEEEEEEecCCC
Confidence 36788899999999997 468899999999999999755556788999999653 44 8999999999999
Q ss_pred CcCCC--C-----Ccc------------------c----CccCCeeecCCc-------hHHHHHHHHHHHHHHhccCCCC
Q 020439 119 MEESV--E-----WEH------------------K----SKVPGKMHACGH-------DAHVAMLLGAAKMLQVFRHEIK 162 (326)
Q Consensus 119 ~~~~~--~-----w~~------------------~----~~~~g~l~GrG~-------k~~~a~~l~a~~~l~~~~~~~~ 162 (326)
+++.. . |.. + ...||++||||+ |+++|++|.|+++|.+.+ .++
T Consensus 82 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~ 160 (404)
T PRK13381 82 VGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENE-VEH 160 (404)
T ss_pred ccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcC-CCC
Confidence 86520 1 211 1 124678999995 899999999999998774 568
Q ss_pred ceEEEEEecCCC-CcccHHHHHHccCCccccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcC-CCCCCC
Q 020439 163 GTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAA-IPQHTI 240 (326)
Q Consensus 163 ~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss-~p~~g~ 240 (326)
++|.|+|++||| ++.|+++++.+++ ..|++++.+. +++. .+. ..++|..+++|+++|+++|++ .|+.|.
T Consensus 161 g~i~~~~~~dEE~g~~G~~~~~~~~~--~~d~~~~~~~--~~~~-~i~----~~~~G~~~~~v~v~Gk~aHa~~~p~~g~ 231 (404)
T PRK13381 161 GDIVVAFVPDEEIGLRGAKALDLARF--PVDFAYTIDC--CELG-EVV----YENFNAASAEITITGVTAHPMSAKGVLV 231 (404)
T ss_pred CCEEEEEEcccccccccHHHHHHhcC--CCCEEEEecC--CCcc-eEE----EecCcceEEEEEEEeEecCCCCCcccCc
Confidence 899999999999 5689999987654 3677776543 3343 322 246899999999999999988 589999
Q ss_pred cHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcC
Q 020439 241 DPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSN 320 (326)
Q Consensus 241 NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~ 320 (326)
|||..+++++.+|+++..+........+++++.++|+ |++|++.+|+|+.|.++.+++.++|+++++++++.++
T Consensus 232 NAI~~a~~~i~~l~~~~~~~~~~~~~~~i~v~~i~g~------p~~~~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~~~ 305 (404)
T PRK13381 232 NPILMANDFISHFPRQETPEHTEGREGYIWVNDLQGN------VNKAKLKLIIRDFDLDGFEARKQFIEEVVAKINAKYP 305 (404)
T ss_pred CHHHHHHHHHHhCCccCCCCCCCCcccEEEEEeEEeC------cceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999876433222223346788887764 8999999999999999999999999999999998887
Q ss_pred -Ceee
Q 020439 321 -SFYS 324 (326)
Q Consensus 321 -~~~~ 324 (326)
++++
T Consensus 306 ~~~~~ 310 (404)
T PRK13381 306 TARVS 310 (404)
T ss_pred CcEEE
Confidence 4444
No 43
>PRK07205 hypothetical protein; Provisional
Probab=100.00 E-value=5.3e-38 Score=301.27 Aligned_cols=258 Identities=14% Similarity=0.089 Sum_probs=192.8
Q ss_pred HHHHHHHHHhhhCCCCCcch----------HHHHHHHHHHHhhcCCCeeecccCceEEEEECCCCCcEEEEEeecCcccC
Q 020439 50 YWMVNIRRKIHENPELGFQE----------FETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAM 119 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e----------~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~I~l~~H~DtVp~ 119 (326)
+++++++++|++|||+|+++ .++++|+.++|+++||+++......+++++++.+ +|+|+|+||+||||+
T Consensus 11 ~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~-~~~lll~gH~DvVp~ 89 (444)
T PRK07205 11 DACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDPKGYYGYAEIGQG-EELLAILCHLDVVPE 89 (444)
T ss_pred HHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcCCCeEEEEEecCC-CcEEEEEEeeccCCC
Confidence 89999999999999999764 5688999999999999987654445667776543 489999999999999
Q ss_pred cCCCCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCc--
Q 020439 120 EESVEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALE-- 189 (326)
Q Consensus 120 ~~~~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~-- 189 (326)
++.+.|+++ .++||++||||+ ||+++++|.|+++|++.+.+++++|.|+|++||| ++.|++++++.....
T Consensus 90 ~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~~~~~~ 169 (444)
T PRK07205 90 GDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKRIRFIFGTDEETLWRCMNRYNEVEEQATM 169 (444)
T ss_pred CCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcccHHHHHhCCCCCCe
Confidence 877789654 356899999997 8999999999999999888889999999999999 678999888742110
Q ss_pred --ccc----EEEEec-----ccCCCCCcceeeccc-----------------------cccccc----eEEEEEEEecCC
Q 020439 190 --NVE----AIFGLH-----VSSLFPVGTVASRPG-----------------------PTLAAG----GFFEAVINGKGG 231 (326)
Q Consensus 190 --~~d----~~i~~~-----~~~~~~~g~~~~~~g-----------------------~~~~G~----~~~~i~~~G~~~ 231 (326)
..| .+++.. ...++|+.......| ...+|. .+.+++++|+++
T Consensus 170 ~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~~~v~v~G~~~ 249 (444)
T PRK07205 170 GFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQAFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKENEVTVLGKSV 249 (444)
T ss_pred eECCCCCCceEEEEeceEEEEEEeCCccceEEecCCcccccCceeEEEecCHHHHHHHHHhcCceEeecCcEEEEEeEEc
Confidence 011 111100 000112211111000 011221 234899999999
Q ss_pred CcCCCCCCCcHHHHHHHHHHHHhHhh-----hcc--------------cC-CCCCceEEEEEEEcCCccccccCeEEEEE
Q 020439 232 HAAIPQHTIDPIVAASNVIVSLQHLV-----SRE--------------AD-PLDSQVLTVAKFEGGGAFNIIPDSVTIGG 291 (326)
Q Consensus 232 Hss~p~~g~NAi~~~~~~i~~l~~~~-----~~~--------------~~-~~~~~t~~i~~i~gG~~~n~iP~~~~~~~ 291 (326)
|+|.|+.|.|||..+++++.++++.. .+. .+ ..+.+++|++.+ |+||++|++.+
T Consensus 250 Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nvg~~------nvvP~~a~~~l 323 (444)
T PRK07205 250 HAKDAPQGINAVIRLAKALVVLEPHPALDFLANVIGEDATGLNIFGDIEDEPSGKLSFNIAGL------TITKEKSEIRI 323 (444)
T ss_pred ccCCCccCcCHHHHHHHHHHhccHHHHHHHHHHhcCCCCccccCCccccCCCcCCceEEeEEE------EEECCEEEEEE
Confidence 99999999999999999998886431 000 01 123567888764 89999999999
Q ss_pred EEEccChhhHHHHHHHHHHHHHH
Q 020439 292 TFRAFSKESIIQLKQRIEEVHLL 314 (326)
Q Consensus 292 diR~~~~~~~~~~~~~i~~~~~~ 314 (326)
|+|++|+++.+++.+.|++++++
T Consensus 324 d~R~~p~~~~e~v~~~i~~~~~~ 346 (444)
T PRK07205 324 DIRIPVLADKEKLVQQLSQKAQE 346 (444)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 44
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-38 Score=297.33 Aligned_cols=267 Identities=22% Similarity=0.325 Sum_probs=210.9
Q ss_pred HHHHHHHHHhhhCCCCC-cchHHHHHHHHHHHhhcCCCeeecc-c----CceEEEEECCCCC-cEEEEEeecCcccCcCC
Q 020439 50 YWMVNIRRKIHENPELG-FQEFETSKLIRAELDQMGIPYKFPV-A----VTGVVGYIGTGQP-PFVALRADMDALAMEES 122 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s-~~e~~~~~~l~~~l~~~G~~~~~~~-~----~~nvia~~~~~~~-~~I~l~~H~DtVp~~~~ 122 (326)
+++++++++|+++||+| .++.++++++.++|+++|+.++... + ..|++++++++.+ |+|+|+||+||||+++.
T Consensus 13 ~~~~~~l~~lv~~~s~s~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~~~l~l~~H~DvVP~g~~ 92 (409)
T COG0624 13 DDILELLKELVRIPSVSAGEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLGGGDGGPTLLLGGHLDVVPAGGG 92 (409)
T ss_pred HHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHcCCceEEeecCCCCCceEEEEEecCCCCCCeEEEeccccccCCCCc
Confidence 88889999999999999 8899999999999999999987632 2 4599999977643 89999999999999987
Q ss_pred CCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCC---ccc
Q 020439 123 VEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGAL---ENV 191 (326)
Q Consensus 123 ~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~---~~~ 191 (326)
..|+++ .++||++||||+ ||+++++++|++.+.+.+..++++|.+++++||| ++.|...++.++.. ..+
T Consensus 93 ~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~ 172 (409)
T COG0624 93 EDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGGAGGKAYLEEGEEALGIRP 172 (409)
T ss_pred ccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCCcchHHHHHhcchhhccCC
Confidence 889664 356799999998 8999999999999999877899999999999999 66888888876531 345
Q ss_pred cEEEEecccC-C-CCCcceeeccccccccceEEEEEEEecCCCcCC--CCCCCcHH----HHHHHHHHHHhHhhhcccCC
Q 020439 192 EAIFGLHVSS-L-FPVGTVASRPGPTLAAGGFFEAVINGKGGHAAI--PQHTIDPI----VAASNVIVSLQHLVSREADP 263 (326)
Q Consensus 192 d~~i~~~~~~-~-~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~--p~~g~NAi----~~~~~~i~~l~~~~~~~~~~ 263 (326)
|+++.. ++ . .+.+.... .+++|..+++|+++|+++|+|. |+.+.|++ ..+.+++..+.++....
T Consensus 173 d~~i~~--E~~~~~~~~~~~~---~~~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~~--- 244 (409)
T COG0624 173 DYEIVG--EPTLESEGGDIIV---VGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEG--- 244 (409)
T ss_pred CEEEeC--CCCCcccCCCeEE---EcceeEEEEEEEEEeecccccccCCcccccHHHHHHHHHHHHHHHhccccccc---
Confidence 666653 33 1 12233222 2578999999999999999997 99999954 44445544444332211
Q ss_pred CC-CceEEEEEEEcCCc--------cccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeee
Q 020439 264 LD-SQVLTVAKFEGGGA--------FNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYS 324 (326)
Q Consensus 264 ~~-~~t~~i~~i~gG~~--------~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 324 (326)
.. ..+++++.+.++.. .|+||++|++.+|+|+.|.++.+++.+++++.++..+...+.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~~~~d~R~~p~~~~~~~~~~v~~~i~~~~~~~~~~~~ 314 (409)
T COG0624 245 FDGPLGLNVGLILAGPGASVNGGDKVNVIPGEAEATVDIRLLPGEDLDDVLEELEAELRAIAPKEGVEYE 314 (409)
T ss_pred ccCCccccccccccCCcccccCCccCceecceEEEEEEEecCCcCCHHHHHHHHHHHHHHhccccCceEE
Confidence 12 46677776666554 599999999999999999999999999999999987654444443
No 45
>PRK07318 dipeptidase PepV; Reviewed
Probab=100.00 E-value=1.1e-37 Score=300.68 Aligned_cols=265 Identities=14% Similarity=0.154 Sum_probs=200.8
Q ss_pred HHHHhhcCchhHHHHHHHHHHhhhCCCCCcc------------hHHHHHHHHHHHhhcCCCeeecccCceEEEEEC-CCC
Q 020439 38 KFLDFAKKPEIFYWMVNIRRKIHENPELGFQ------------EFETSKLIRAELDQMGIPYKFPVAVTGVVGYIG-TGQ 104 (326)
Q Consensus 38 ~~~~~~~~~~~~~~~i~~l~~l~~ips~s~~------------e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~-~~~ 104 (326)
++.+++++++ +++++++++|++|||++++ +.++++|+.++|+++||+++..+ |++++.. +..
T Consensus 4 ~~~~~~~~~~--~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~~---n~~~~~~~~~~ 78 (466)
T PRK07318 4 DWKKEVEKRK--DDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNVD---NYAGHIEYGEG 78 (466)
T ss_pred hHHHHHHHhH--HHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEec---CccceEEECCC
Confidence 4678888888 9999999999999999965 46899999999999999988543 5665542 223
Q ss_pred CcEEEEEeecCcccCcCCCCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-Cc
Q 020439 105 PPFVALRADMDALAMEESVEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GG 176 (326)
Q Consensus 105 ~~~I~l~~H~DtVp~~~~~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~ 176 (326)
+|+|+|+||+||||+++ .|+++ .++||++||||+ ||+++++++|++.|++.+..++++|.|+|++||| ++
T Consensus 79 ~~~l~l~gH~DvVp~~~--~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~~~~~i~l~~~~DEE~g~ 156 (466)
T PRK07318 79 EEVLGILGHLDVVPAGD--GWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKVRFIVGTDEESGW 156 (466)
T ss_pred CCEEEEEEecCCCCCCC--CCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcCCCCCccEEEEEEcccccCc
Confidence 48999999999999874 68654 356899999997 8999999999999999887888999999999999 67
Q ss_pred ccHHHHHHccCCcc----cc----EEEEec----------------------ccCCCCCcce------eec---------
Q 020439 177 GGAKKMLDAGALEN----VE----AIFGLH----------------------VSSLFPVGTV------ASR--------- 211 (326)
Q Consensus 177 ~G~~~l~~~g~~~~----~d----~~i~~~----------------------~~~~~~~g~~------~~~--------- 211 (326)
.|++++++...... .| .+++.. .+++.+++.+ ...
T Consensus 157 ~G~~~l~~~~~~~~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~ 236 (466)
T PRK07318 157 KCMDYYFEHEEAPDFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVLVSFKSGLRENMVPDSAEAVITGDDLDDLIA 236 (466)
T ss_pred hhHHHHHHhCCCCCEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCceeEEEEcCccceecCcccEEEEecCCHHHHHH
Confidence 89999998642110 11 121110 0011111110 000
Q ss_pred ------cccccccc-----eEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHh------h----h------------
Q 020439 212 ------PGPTLAAG-----GFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHL------V----S------------ 258 (326)
Q Consensus 212 ------~g~~~~G~-----~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~------~----~------------ 258 (326)
...+++|. .|++|+++|+++|+|.|+.|.|||..|++++.+|+.. . .
T Consensus 237 ~~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
T PRK07318 237 AFEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFLNQLNLDGDAKAFLDFAAEYLHEDTRGEKLG 316 (466)
T ss_pred HHHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCcccCC
Confidence 00134554 4799999999999999999999999999999998641 0 0
Q ss_pred --cccCCCCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHH
Q 020439 259 --READPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLL 314 (326)
Q Consensus 259 --~~~~~~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~ 314 (326)
......+..|+|++.|+||... +|++.+|+|++|+++.+++.++|++.+++
T Consensus 317 ~~~~~~~~g~~t~nvg~i~gg~~~-----~~~~~iDiR~~p~~~~~~v~~~i~~~~~~ 369 (466)
T PRK07318 317 IAYEDDVMGDLTMNVGVFSFDEEK-----GGTLGLNFRYPVGTDFEKIKAKLEKLIGV 369 (466)
T ss_pred CcccCCCccCeEEEeeEEEEecCc-----EEEEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 0011124579999999998542 79999999999999999999999988665
No 46
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=1.1e-36 Score=289.59 Aligned_cols=256 Identities=18% Similarity=0.179 Sum_probs=202.2
Q ss_pred HHHHHHHHHhhhCCC---------CCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECC-CCCcEEEEEeecCcccC
Q 020439 50 YWMVNIRRKIHENPE---------LGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGT-GQPPFVALRADMDALAM 119 (326)
Q Consensus 50 ~~~i~~l~~l~~ips---------~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~-~~~~~I~l~~H~DtVp~ 119 (326)
+++++++++|++|+| ++++|.++++||.++|+++|++++.. ..+|+++++++ +++|+|+|+||+||||+
T Consensus 10 ~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~-~~~nl~a~~~g~~~~~~l~l~gH~DtVp~ 88 (412)
T PRK12892 10 QRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID-GIGNVFGRLPGPGPGPALLVGSHLDSQNL 88 (412)
T ss_pred HHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEecCCCCCCeEEEEccccCCCC
Confidence 678889999999866 56678999999999999999999864 46799999965 34589999999999997
Q ss_pred cCCCCCcccCccCCeeecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCC-----c-ccHHHHHHccCC-----
Q 020439 120 EESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEG-----G-GGAKKMLDAGAL----- 188 (326)
Q Consensus 120 ~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-----~-~G~~~l~~~g~~----- 188 (326)
+ |++||+ +|++++|+|++.|++.+..++++|.|++++|||+ + .|+++++++...
T Consensus 89 ~------------g~~dg~---~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~ 153 (412)
T PRK12892 89 G------------GRYDGA---LGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGSRAYAGRLDPADALA 153 (412)
T ss_pred C------------Ccccch---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccHHHHHcCCCHHHHHh
Confidence 5 334553 6899999999999998888999999999999995 3 599988742100
Q ss_pred -----c-------------cccEEE-----------EecccCC---CCCcceeeccccccccceEEEEEEEecCCCcC-C
Q 020439 189 -----E-------------NVEAIF-----------GLHVSSL---FPVGTVASRPGPTLAAGGFFEAVINGKGGHAA-I 235 (326)
Q Consensus 189 -----~-------------~~d~~i-----------~~~~~~~---~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss-~ 235 (326)
+ ..|+++ -.|.+.+ ++++. ......+++|..+++|+++|+++|++ .
T Consensus 154 ~~~~~~~~~~~~~~~~~g~~~d~~~~~ep~~~~~~~e~~~~~g~~~e~~~~-~~~i~~~~kG~~~~~i~v~G~~aHa~~~ 232 (412)
T PRK12892 154 ARCRSDGVPLRDALAAAGLAGRPRPAADRARPKGYLEAHIEQGPVLEQAGL-PVGVVTGIVGIWQYRITVTGEAGHAGTT 232 (412)
T ss_pred CccCCCCcCHHHHHHHcCCChhhcccccccCccEEEEEEeccCHhHhhCCC-cEEEEEEeccceEEEEEEEEECCCCCCC
Confidence 0 011111 1122111 11121 11224567999999999999999997 4
Q ss_pred CC-CCCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcC-CccccccCeEEEEEEEEccChhhHHHHHHHHHHHHH
Q 020439 236 PQ-HTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGG-GAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHL 313 (326)
Q Consensus 236 p~-~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG-~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 313 (326)
|+ .|.|||..+++++.+|+++..+.. .+.+++++.|+|| ...|+||++|++++|+|+.|.++.+++.++|+++++
T Consensus 233 p~~~g~nAi~~a~~~i~~l~~~~~~~~---~~~~~~vg~i~gg~~~~NvIP~~a~~~~diR~~p~~~~~~v~~~i~~~~~ 309 (412)
T PRK12892 233 PMALRRDAGLAAAEMIAAIDEHFPRVC---GPAVVTVGRVALDPGSPSIIPGRVEFSFDARHPSPPVLQRLVALLEALCR 309 (412)
T ss_pred CcccccCHHHHHHHHHHHHHHHHHhcC---CCcEEEEEEEEecCCCCeEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHH
Confidence 65 689999999999999988643321 2379999999987 799999999999999999999999999999999999
Q ss_pred HHHHHcCCeeee
Q 020439 314 LIVANSNSFYSW 325 (326)
Q Consensus 314 ~~~~~~~~~~~~ 325 (326)
+.+..++++++|
T Consensus 310 ~~~~~~~~~~e~ 321 (412)
T PRK12892 310 EIARRRGCRVSV 321 (412)
T ss_pred HHHHHhCCeEEE
Confidence 998888887765
No 47
>PRK05469 peptidase T; Provisional
Probab=100.00 E-value=2.2e-36 Score=287.16 Aligned_cols=259 Identities=16% Similarity=0.165 Sum_probs=201.7
Q ss_pred HHHHHHHHHhhhCCCCCcc----------hHHHHHHHHHHHhhcCCC-eeecccCceEEEEECCC---CCcEEEEEeecC
Q 020439 50 YWMVNIRRKIHENPELGFQ----------EFETSKLIRAELDQMGIP-YKFPVAVTGVVGYIGTG---QPPFVALRADMD 115 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~----------e~~~~~~l~~~l~~~G~~-~~~~~~~~nvia~~~~~---~~~~I~l~~H~D 115 (326)
+++++.|++|++|||+|.+ +.++++||+++|+++|++ ++.+ ..+|+++.++++ ++|+|+|+||||
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~-~~~~v~~~~~g~~~~~~~~i~l~~H~D 80 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLD-ENGYVMATLPANVDKDVPTIGFIAHMD 80 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEC-CCeEEEEEecCCCCCCCCeEEEEEecc
Confidence 5789999999999999977 789999999999999997 5544 467899998653 249999999999
Q ss_pred cccCcCC---------------------CCCcccC--------ccCCeeecCC-------chHHHHHHHHHHHHHHhccC
Q 020439 116 ALAMEES---------------------VEWEHKS--------KVPGKMHACG-------HDAHVAMLLGAAKMLQVFRH 159 (326)
Q Consensus 116 tVp~~~~---------------------~~w~~~~--------~~~g~l~GrG-------~k~~~a~~l~a~~~l~~~~~ 159 (326)
|||+.+. +.|++++ ..+|.+|||| +|+++|++++|+++|++.+.
T Consensus 81 ~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~ 160 (408)
T PRK05469 81 TAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAHPE 160 (408)
T ss_pred CCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhCCC
Confidence 9987541 2243321 1235678877 38999999999999988765
Q ss_pred CCCceEEEEEecCCCCcccHHHHHHccCCccccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcC-CCCC
Q 020439 160 EIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAA-IPQH 238 (326)
Q Consensus 160 ~~~~~i~~~~~~dEE~~~G~~~l~~~g~~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss-~p~~ 238 (326)
.++++|.|+|++|||.+.|++.++.++. ..++.+.++. .+.|.+.. ..+|..+++|+++|+++|++ .|+.
T Consensus 161 ~~~g~v~~~f~~dEE~g~Ga~~~~~~~~--~~~~~~~~~~---~~~g~~~~----~~~g~~~~~i~v~Gk~~Ha~~~p~~ 231 (408)
T PRK05469 161 IKHGDIRVAFTPDEEIGRGADKFDVEKF--GADFAYTVDG---GPLGELEY----ENFNAASAKITIHGVNVHPGTAKGK 231 (408)
T ss_pred CCCCCEEEEEecccccCCCHHHhhhhhc--CCcEEEEecC---CCcceEEe----ccCceeEEEEEEeeecCCCCCCccc
Confidence 6789999999999995489998865433 2455554432 34555433 34688999999999999987 5899
Q ss_pred CCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHH
Q 020439 239 TIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVAN 318 (326)
Q Consensus 239 g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~ 318 (326)
|.|||..+++++..|+++..+........+++++.++|| |++|++.+|+|+.|.++.+++.++|+++++++++.
T Consensus 232 g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~g~i~gg------p~~~~i~~diR~~~~e~~e~i~~~i~~~~~~~~~~ 305 (408)
T PRK05469 232 MVNALLLAADFHAMLPADETPETTEGYEGFYHLTSIKGT------VEEAELSYIIRDFDREGFEARKALMQEIAKKVNAK 305 (408)
T ss_pred ccCHHHHHHHHHHhCCCCCCCCCCCCceEEEEEEEEEEc------cceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998765422211122345788888876 79999999999999999999999999999999988
Q ss_pred c-CCeee
Q 020439 319 S-NSFYS 324 (326)
Q Consensus 319 ~-~~~~~ 324 (326)
+ +++++
T Consensus 306 ~~~~~~~ 312 (408)
T PRK05469 306 YGEGRVE 312 (408)
T ss_pred cCCCeEE
Confidence 7 44443
No 48
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=2e-36 Score=287.87 Aligned_cols=256 Identities=18% Similarity=0.210 Sum_probs=203.2
Q ss_pred HHHHHHHHHhhhCCCC----------CcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCC--CCcEEEEEeecCcc
Q 020439 50 YWMVNIRRKIHENPEL----------GFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG--QPPFVALRADMDAL 117 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~----------s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~I~l~~H~DtV 117 (326)
+++++++++|++|||. |++|.++++||.++|+++||+++.. ...|+++++++. ++|+|+|+||+|||
T Consensus 10 ~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~-~~~n~~a~~~g~~~~~~~l~l~~H~DtV 88 (412)
T PRK12893 10 ERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD-AIGNLFGRRAGTDPDAPPVLIGSHLDTQ 88 (412)
T ss_pred HHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEeCCCCCCCCEEEEEecccCC
Confidence 7899999999999964 4558999999999999999999864 356999999543 25899999999999
Q ss_pred cCcCCCCCcccCccCCeeecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCC------cccHHHHHHccCC---
Q 020439 118 AMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEG------GGGAKKMLDAGAL--- 188 (326)
Q Consensus 118 p~~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~------~~G~~~l~~~g~~--- 188 (326)
|.+ |.+|| |++++++|+|+++|++.+..++++|.|+|++|||+ +.|+..+.+....
T Consensus 89 p~~------------g~~dg---k~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~~~~~~~~~~~~~ 153 (412)
T PRK12893 89 PTG------------GRFDG---ALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGSGVFTGALPLDDA 153 (412)
T ss_pred CCC------------Ccccc---hhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccHHHHhCcCChHHH
Confidence 964 23344 58999999999999998878899999999999994 3588877643210
Q ss_pred ----------------------------ccccEEEEecccCCC---CCcceeeccccccccceEEEEEEEecCCCcCC-C
Q 020439 189 ----------------------------ENVEAIFGLHVSSLF---PVGTVASRPGPTLAAGGFFEAVINGKGGHAAI-P 236 (326)
Q Consensus 189 ----------------------------~~~d~~i~~~~~~~~---~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~-p 236 (326)
.+.++.+.+|..++. +.+. ......+++|..+++|+++|+++|+|. |
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~i~~~~kG~~~~~i~v~G~~aHas~~p 232 (412)
T PRK12893 154 LARRDADGITLGEALARIGYRGTARVGRRAVDAYLELHIEQGPVLEAEGL-PIGVVTGIQGIRWLEVTVEGQAAHAGTTP 232 (412)
T ss_pred HhccCCCCCCHHHHHHHcCCCcccccccCCccEEEEEEeccCHHHHHCCC-cEEEEeeecccEEEEEEEEEECCCcCCCc
Confidence 012333334332210 0110 112345689999999999999999985 8
Q ss_pred C-CCCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcC-CccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHH
Q 020439 237 Q-HTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGG-GAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLL 314 (326)
Q Consensus 237 ~-~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG-~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~ 314 (326)
+ .|+|||..+++++.+|+++..+.. ...+++++.|++| ...|+||++|++++|+|++|.++.+++.++|++++++
T Consensus 233 ~~~G~NAI~~a~~~i~~l~~~~~~~~---~~~~~~vg~i~ggg~~~NvVP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~ 309 (412)
T PRK12893 233 MAMRRDALVAAARIILAVERIAAALA---PDGVATVGRLRVEPNSRNVIPGKVVFTVDIRHPDDARLDAMEAALRAACAK 309 (412)
T ss_pred chhccCHHHHHHHHHHHHHHHHHhcC---CCceEEEEEEEeeCCCceEECCeeEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 5 799999999999999988753321 2468999999985 7999999999999999999999999999999999999
Q ss_pred HHHHcCCeeee
Q 020439 315 IVANSNSFYSW 325 (326)
Q Consensus 315 ~~~~~~~~~~~ 325 (326)
.+..++++++|
T Consensus 310 ~~~~~~~~v~~ 320 (412)
T PRK12893 310 IAAARGVQVTV 320 (412)
T ss_pred HHHHcCCeEEE
Confidence 98888887765
No 49
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=100.00 E-value=1.4e-36 Score=281.56 Aligned_cols=231 Identities=12% Similarity=0.085 Sum_probs=187.2
Q ss_pred HHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCCCCcEEEEEeecCcccCcCCCCCcccCccCCe
Q 020439 55 IRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEHKSKVPGK 134 (326)
Q Consensus 55 ~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~I~l~~H~DtVp~~~~~~w~~~~~~~g~ 134 (326)
++++|++|||+|++|.++++||.++|+++|+++..+ ...|+++..+++ +|+|+|+|||||||. .|+. .++||+
T Consensus 2 ~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~-~~~~~~~~~~~~-~~~i~~~~H~D~vp~----~~~~-~~~~g~ 74 (336)
T TIGR01902 2 LLKDLLEIYSPSGKEANAAKFLEEISKDLGLKLIID-DAGNFILGKGDG-HKKILLAGHVDTVPG----YIPV-KIEGGL 74 (336)
T ss_pred hHHHHhcCCCCCcchHHHHHHHHHHHHHcCCEEEEC-CCCcEEEEeCCC-CceEEEEccccccCC----Cccc-EEeCCE
Confidence 688999999999999999999999999999998543 456888876443 589999999999995 2543 356899
Q ss_pred eecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccccEEEEecccCCCCCcceee
Q 020439 135 MHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVAS 210 (326)
Q Consensus 135 l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~~~~~~~~g~~~~ 210 (326)
+||||+ |++++++++|++.|++. ..+|.|++++||| ++.|+++++++.. .++++.. +|++.-.
T Consensus 75 i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~ii~-----ept~~~~- 141 (336)
T TIGR01902 75 LYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSKGAREVIDKNY---PFYVIVG-----EPSGAEG- 141 (336)
T ss_pred EEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCccHHHHHhhcC---CCEEEEe-----cCCCCcc-
Confidence 999997 89999999999999754 3589999999999 6789999998743 2355542 2443211
Q ss_pred ccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcCCccccccCeEEEE
Q 020439 211 RPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTIG 290 (326)
Q Consensus 211 ~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG~~~n~iP~~~~~~ 290 (326)
...+++|..+++++++|+++|+|.|+ ||+..+..++..|.+..... ......+++++.++||...|+||++|+++
T Consensus 142 -i~~~~kG~~~~~v~~~G~~~Hss~~~---~ai~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~i~gg~~~nvIP~~a~~~ 216 (336)
T TIGR01902 142 -ITLGYKGSLQLKIMCEGTPFHSSSAG---NAAELLIDYSKKIIEVYKQP-ENYDKPSIVPTIIRFGESYNDTPAKLELH 216 (336)
T ss_pred -eeeeeeeEEEEEEEEEecCcccCCCh---hHHHHHHHHHHHHHHHhccc-cCCCCCcceeEEEEccCCCcCCCceEEEE
Confidence 23467899999999999999999875 58999999999887422111 11224578999999999999999999999
Q ss_pred EEEEccChhhHHHHHHHHHH
Q 020439 291 GTFRAFSKESIIQLKQRIEE 310 (326)
Q Consensus 291 ~diR~~~~~~~~~~~~~i~~ 310 (326)
+|+|+.|+++.+++.+++++
T Consensus 217 idiR~~p~~~~~~~~~~i~~ 236 (336)
T TIGR01902 217 FDLRYPPNNKPEEAIKEITD 236 (336)
T ss_pred EEEeeCCCCCHHHHHHHHHh
Confidence 99999999999999888876
No 50
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=3.6e-36 Score=286.08 Aligned_cols=254 Identities=18% Similarity=0.232 Sum_probs=201.8
Q ss_pred HHHHHHHHHhhhC-C---------CCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCC--CCcEEEEEeecCcc
Q 020439 50 YWMVNIRRKIHEN-P---------ELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG--QPPFVALRADMDAL 117 (326)
Q Consensus 50 ~~~i~~l~~l~~i-p---------s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~I~l~~H~DtV 117 (326)
+.+++++++|++| + |+|++|.++++||.++|+++||+++.. ...|++++++++ .+|+|+|+||+|||
T Consensus 7 ~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~-~~~nl~a~~~g~~~~~~~l~l~gH~DtV 85 (413)
T PRK09290 7 ERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVD-AVGNLFGRLEGRDPDAPAVLTGSHLDTV 85 (413)
T ss_pred HHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEecCCCCCCCEEEEecCccCC
Confidence 7788888888888 3 778899999999999999999999864 467999999653 25899999999999
Q ss_pred cCcCCCCCcccCccCCeeecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCCc------ccHHHHHHc------
Q 020439 118 AMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG------GGAKKMLDA------ 185 (326)
Q Consensus 118 p~~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~------~G~~~l~~~------ 185 (326)
|++. .+ +.|+++|++++|+++|++.+..++++|.|++++|||.+ .|++.+++.
T Consensus 86 p~~g------------~~---d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~~~~~~ 150 (413)
T PRK09290 86 PNGG------------RF---DGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGALTPEDA 150 (413)
T ss_pred CCCC------------Cc---CCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCccccHHHHHcccCHHHH
Confidence 9752 12 22789999999999999888788999999999999942 578777532
Q ss_pred ------------------cCCccccEEEEe-------------cccC---CCCCcceeeccccccccceEEEEEEEecCC
Q 020439 186 ------------------GALENVEAIFGL-------------HVSS---LFPVGTVASRPGPTLAAGGFFEAVINGKGG 231 (326)
Q Consensus 186 ------------------g~~~~~d~~i~~-------------~~~~---~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~ 231 (326)
|+ +.|++++. |.+. .+|++. ......+++|..+++|+++|+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~--~~d~~i~~~~ept~~~~~~~~~~~~~~~~e~~~~-~~~i~~~~kG~~~~~i~v~Gk~a 227 (413)
T PRK09290 151 LALRDADGVSFAEALAAIGY--DGDEAVGAARARRDIKAFVELHIEQGPVLEAEGL-PIGVVTGIVGQRRYRVTFTGEAN 227 (413)
T ss_pred HhccCCCCCCHHHHHHHcCC--ChhhccccccCCCCccEEEEEEeccCHHHHHCCC-cEEEEeeeeccEEEEEEEEEECC
Confidence 21 23444421 1100 012221 11224568999999999999999
Q ss_pred CcC-CC-CCCCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcC-CccccccCeEEEEEEEEccChhhHHHHHHHH
Q 020439 232 HAA-IP-QHTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGG-GAFNIIPDSVTIGGTFRAFSKESIIQLKQRI 308 (326)
Q Consensus 232 Hss-~p-~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG-~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i 308 (326)
|++ .| +.|.|||..+++++.+|+++..+.. ...+++++.+++| ...|+||++|++++|+|+.|.++.+++.++|
T Consensus 228 Has~~P~~~g~NAI~~~~~~i~~l~~l~~~~~---~~~~~~~g~i~~g~~~~NvIP~~a~~~~diR~~p~e~~e~v~~~i 304 (413)
T PRK09290 228 HAGTTPMALRRDALLAAAEIILAVERIAAAHG---PDLVATVGRLEVKPNSVNVIPGEVTFTLDIRHPDDAVLDALVAEL 304 (413)
T ss_pred CCCCCCchhccCHHHHHHHHHHHHHHHHHhcC---CCeEEEEEEEEEcCCCCeEECCEEEEEEEEeCCCHHHHHHHHHHH
Confidence 998 68 5799999999999999987653221 2368999999975 7999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeeee
Q 020439 309 EEVHLLIVANSNSFYSW 325 (326)
Q Consensus 309 ~~~~~~~~~~~~~~~~~ 325 (326)
++++++.+..++++++|
T Consensus 305 ~~~~~~~~~~~~~~~e~ 321 (413)
T PRK09290 305 RAAAEAIAARRGVEVEI 321 (413)
T ss_pred HHHHHHHHHHcCCeEEE
Confidence 99999998888887765
No 51
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=100.00 E-value=3.4e-36 Score=285.82 Aligned_cols=256 Identities=15% Similarity=0.136 Sum_probs=198.5
Q ss_pred HHHHHHHHHhhhCCCCCc----------chHHHHHHHHHHHhhcCCC-eeecccCceEEEEECCCCC---cEEEEEeecC
Q 020439 50 YWMVNIRRKIHENPELGF----------QEFETSKLIRAELDQMGIP-YKFPVAVTGVVGYIGTGQP---PFVALRADMD 115 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~----------~e~~~~~~l~~~l~~~G~~-~~~~~~~~nvia~~~~~~~---~~I~l~~H~D 115 (326)
+.+++.+.++++|+|+|+ .|.+++++|+++|+++|++ ++.+.+.+||+|++++..+ |+|+|.+|||
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~~~gnv~~~~~~~~~~~~~~i~~~aHmD 82 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQDAHYDEKNGYVIATIPSNTDKDVPTIGFLAHVD 82 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCceEEEcCCceEEEEEecCCCCCCCCEEEEEEecc
Confidence 678888899999999997 5568999999999999997 7776547899999855433 8999999999
Q ss_pred cccCcCCC-------------------------CCccc-----------CccCCeeecCCchHHHHHHHHHHHHHHhccC
Q 020439 116 ALAMEESV-------------------------EWEHK-----------SKVPGKMHACGHDAHVAMLLGAAKMLQVFRH 159 (326)
Q Consensus 116 tVp~~~~~-------------------------~w~~~-----------~~~~g~l~GrG~k~~~a~~l~a~~~l~~~~~ 159 (326)
|||..... .|.|+ ...++.+||.++|+++|++|+|++.|++.+.
T Consensus 83 Tv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G~D~KgglAa~l~A~~~L~e~~~ 162 (410)
T TIGR01882 83 TADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLGADDKAGIAEIMTAADYLINHPE 162 (410)
T ss_pred cCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeecccCHHHHHHHHHHHHHHHhCCC
Confidence 99843221 34332 1335689999999999999999999988643
Q ss_pred CCCceEEEEEecCCCCcccHHHHHHccCCccccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCC-CC
Q 020439 160 EIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIP-QH 238 (326)
Q Consensus 160 ~~~~~i~~~~~~dEE~~~G~~~l~~~g~~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p-~~ 238 (326)
.++++|.|+|++|||.+.|++.+..++. +.++.+.+ + ++|+|.+..+ ..|..+++|+++|+++|++.+ +.
T Consensus 163 ~~~g~I~~~ft~dEE~g~Ga~~l~~~~~--~~~~~~~i--~-gep~g~i~~~----~~g~~~~~I~v~Gk~aHa~~~~~~ 233 (410)
T TIGR01882 163 IKHGTIRVAFTPDEEIGRGAHKFDVKDF--NADFAYTV--D-GGPLGELEYE----TFSAAAAKITIQGNNVHPGTAKGK 233 (410)
T ss_pred CCCCCEEEEEECcccCCcCcchhhhhhc--CccEEEEe--C-CCCCCeEEEc----cccceEEEEEEEEEecCcccChHH
Confidence 4689999999999995578888865443 34444443 3 3577765433 358899999999999999965 67
Q ss_pred CCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHH
Q 020439 239 TIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVAN 318 (326)
Q Consensus 239 g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~ 318 (326)
++||+..+.+++..+.... .+ ...+-+.+.+++|. .|.+|++|++.+|+|+.+.++.+++.++|+++++++++.
T Consensus 234 g~nAi~~a~~~~~~l~~~~----~~-~~t~~~~g~i~~g~-i~giPd~a~l~~diR~~~~e~~e~i~~~i~~i~~~~~~~ 307 (410)
T TIGR01882 234 MINAAQIAIDLHNLLPEDD----RP-EYTEGREGFFHLLS-IDGTVEEAKLHYIIRDFEKENFQERKELMKRIVEKMNNE 307 (410)
T ss_pred HHHHHHHHHHHHHhcCCcC----CC-ccccceeEEEEEEe-EEEecCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999877665421 11 11111234455553 566999999999999999999999999999999999888
Q ss_pred cC
Q 020439 319 SN 320 (326)
Q Consensus 319 ~~ 320 (326)
++
T Consensus 308 ~g 309 (410)
T TIGR01882 308 YG 309 (410)
T ss_pred cC
Confidence 76
No 52
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=4.1e-35 Score=278.83 Aligned_cols=255 Identities=16% Similarity=0.132 Sum_probs=201.4
Q ss_pred HHHHHHHHhhhC----------CCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCC-C-CcEEEEEeecCccc
Q 020439 51 WMVNIRRKIHEN----------PELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG-Q-PPFVALRADMDALA 118 (326)
Q Consensus 51 ~~i~~l~~l~~i----------ps~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~-~-~~~I~l~~H~DtVp 118 (326)
++++.+.+|-++ ++.+++|.++++||.++|+++|++++.+. ..|+++++++. + +|+|+|+||+||||
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~~~-~gNl~a~~~g~~~~~~~l~~~~H~DtVp 89 (414)
T PRK12891 11 RLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRVDA-MGNLFARRAGRDPDAAPVMTGSHADSQP 89 (414)
T ss_pred HHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEECC-CCCEEEEecCCCCCCCeEEEEecccCCC
Confidence 455555555554 23456789999999999999999998754 57999999653 2 48999999999999
Q ss_pred CcCCCCCcccCccCCeeecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCCc------ccHHHH----------
Q 020439 119 MEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG------GGAKKM---------- 182 (326)
Q Consensus 119 ~~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~------~G~~~l---------- 182 (326)
.+. . .++|+|++++++|+++|++.+.+++++|.|++++|||++ .|++.+
T Consensus 90 ~gg------------~---~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~~~~~~ 154 (414)
T PRK12891 90 TGG------------R---YDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYPLEYLL 154 (414)
T ss_pred CCc------------c---ccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHHhCCCCHHHHH
Confidence 752 1 246899999999999999999899999999999999953 477644
Q ss_pred --------------HHccCC-------ccccEEEEecccCC---CCCcceeeccccccccceEEEEEEEecCCCcC-CCC
Q 020439 183 --------------LDAGAL-------ENVEAIFGLHVSSL---FPVGTVASRPGPTLAAGGFFEAVINGKGGHAA-IPQ 237 (326)
Q Consensus 183 --------------~~~g~~-------~~~d~~i~~~~~~~---~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss-~p~ 237 (326)
.+.|+. .+.++.+.+|.+++ ++.+. ......+++|..+++|+++|+++|+| .|+
T Consensus 155 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~e~h~e~g~vle~~~~-~~~iv~~~kG~~~~~v~v~Gk~aHa~~~P~ 233 (414)
T PRK12891 155 SRRDDTGRTLGEHLARIGYAGAEPVGGYPVHAAYELHIEQGAILERAGK-TIGVVTAGQGQRWYEVTLTGVDAHAGTTPM 233 (414)
T ss_pred hccCCCCCCHHHHHHHCCCCcccccccCCCCEEEEEEeCCCHHHHHCCC-cEEEEeeccCcEEEEEEEEeECCCCCCCCc
Confidence 344431 12335555565543 12221 11224567999999999999999998 686
Q ss_pred -CCCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcC-CccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHH
Q 020439 238 -HTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGG-GAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLI 315 (326)
Q Consensus 238 -~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG-~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~ 315 (326)
.|.|||..+++++.+|+++..+. ..+.++|++.|+|| ...|+||++|++.+|+|+.|.++.+++.++|+++++++
T Consensus 234 ~~g~nAI~~aa~~i~~l~~~~~~~---~~~~t~~vg~I~gG~~~~NvVP~~~~~~~diR~~~~e~~e~v~~~i~~~~~~~ 310 (414)
T PRK12891 234 AFRRDALVGAARMIAFLDALGRRD---APDARATVGMIDARPNSRNTVPGECFFTVEFRHPDDAVLDRLDAALRAELARI 310 (414)
T ss_pred ccccCHHHHHHHHHHHHHHHHHhc---CCCeEEEEEEEEeeCCCcceECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999998875321 13469999999997 68999999999999999999999999999999999999
Q ss_pred HHHcCCeeee
Q 020439 316 VANSNSFYSW 325 (326)
Q Consensus 316 ~~~~~~~~~~ 325 (326)
+..++++++|
T Consensus 311 ~~~~~~~~~~ 320 (414)
T PRK12891 311 ADETGLRADI 320 (414)
T ss_pred HHHhCCEEEE
Confidence 8888887765
No 53
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=100.00 E-value=7.6e-35 Score=278.55 Aligned_cols=251 Identities=13% Similarity=0.130 Sum_probs=188.1
Q ss_pred HHHHHHHHHhhhCCCCCcc------------hHHHHHHHHHHHhhcCCCeeecccCceEEEE--ECCCCCcEEEEEeecC
Q 020439 50 YWMVNIRRKIHENPELGFQ------------EFETSKLIRAELDQMGIPYKFPVAVTGVVGY--IGTGQPPFVALRADMD 115 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~------------e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~--~~~~~~~~I~l~~H~D 115 (326)
+++++++++|++|||++.+ +.++++|+.++|+++|++++... |+++. ++++ .|+|+|+||+|
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~---~~~~~~~~~~~-~~~l~l~gH~D 77 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENVD---NYAGYAEYGQG-EEYLGILGHLD 77 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEec---CceEEEEeCCC-CCeEEEEeecC
Confidence 6789999999999999832 36899999999999999988432 44333 3333 47999999999
Q ss_pred cccCcCCCCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccC
Q 020439 116 ALAMEESVEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGA 187 (326)
Q Consensus 116 tVp~~~~~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~ 187 (326)
|||+++ .|.++ .++||+|||||+ ||+++++++|++.|++.+.+++++|.|+|++||| ++.|+++++++..
T Consensus 78 ~Vp~~~--~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 155 (447)
T TIGR01887 78 VVPAGD--GWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGLKLKKKIRFIFGTDEETGWACIDYYFEHEE 155 (447)
T ss_pred CCCCCC--CCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcHhHHHHHHhcC
Confidence 999875 58654 356899999997 8999999999999999887889999999999999 6789999887632
Q ss_pred Cc----ccc----EEEEec---------------------ccCCCCCccee--eccccccc-------------------
Q 020439 188 LE----NVE----AIFGLH---------------------VSSLFPVGTVA--SRPGPTLA------------------- 217 (326)
Q Consensus 188 ~~----~~d----~~i~~~---------------------~~~~~~~g~~~--~~~g~~~~------------------- 217 (326)
.. ..| ++++.. ...++|++.+. ......++
T Consensus 156 ~~~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~ 235 (447)
T TIGR01887 156 APDIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLESFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELE 235 (447)
T ss_pred CCCEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEEEeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcc
Confidence 11 012 233210 01233444321 00011122
Q ss_pred cce-----EEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHh--Hhhhc---------------------ccCC-CCCce
Q 020439 218 AGG-----FFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQ--HLVSR---------------------EADP-LDSQV 268 (326)
Q Consensus 218 G~~-----~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~--~~~~~---------------------~~~~-~~~~t 268 (326)
|.. +++|+++|+++|+|.|+.|.|||..+++++..+. +...+ ..++ .+.++
T Consensus 236 g~~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t 315 (447)
T TIGR01887 236 GSFEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLT 315 (447)
T ss_pred eEEEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcE
Confidence 555 7999999999999999999999999999999986 22100 0011 24578
Q ss_pred EEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHH
Q 020439 269 LTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEV 311 (326)
Q Consensus 269 ~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~ 311 (326)
+|++.|++|. |++|++.+|+|++|+++.+++.+++.+.
T Consensus 316 ~nvg~I~~g~-----p~~~~~~~d~R~~p~~~~e~~~~~i~~~ 353 (447)
T TIGR01887 316 MNVGVIDYEN-----AEAGLIGLNVRYPVGNDPDTMLKNELAK 353 (447)
T ss_pred EEEEEEEEeC-----CcEEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 9999999883 8999999999999999999877777644
No 54
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=100.00 E-value=1.2e-34 Score=278.76 Aligned_cols=247 Identities=17% Similarity=0.169 Sum_probs=195.3
Q ss_pred HHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECC--C--CCcEEEEEeecCcccCcCCC--
Q 020439 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGT--G--QPPFVALRADMDALAMEESV-- 123 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~--~--~~~~I~l~~H~DtVp~~~~~-- 123 (326)
+++++++++|++|||+|++|.++++|+.++++++|++++.+. .+|+++++.+ + ..|+|+|.|||||||+++..
T Consensus 10 ~~~~~~l~~Lv~ips~S~~e~~~~~~l~~~~~~~G~~~~~d~-~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~ 88 (485)
T PRK15026 10 QPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQ-VGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTV 88 (485)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe-cCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCcc
Confidence 779999999999999999999999999999999999998653 5689888742 2 24899999999999987532
Q ss_pred -CCccc----CccCCeeecCCc------hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccc
Q 020439 124 -EWEHK----SKVPGKMHACGH------DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENV 191 (326)
Q Consensus 124 -~w~~~----~~~~g~l~GrG~------k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~ 191 (326)
+|..+ .++||++||||+ |+|++++|+++ ++.+. .+++|.++|++||| |+.|++.+.. ..+ ..
T Consensus 89 ~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l---~~~~~-~~~~i~~l~t~dEE~G~~ga~~l~~-~~~-~~ 162 (485)
T PRK15026 89 HDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVL---ADENV-VHGPLEVLLTMTEEAGMDGAFGLQS-NWL-QA 162 (485)
T ss_pred ccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHH---HhCCC-CCCCEEEEEEcccccCcHhHHHhhh-ccC-Cc
Confidence 57544 246899999996 57888877665 44443 47899999999999 6789999865 332 46
Q ss_pred cEEEEecccCCCCCcceeecc-c-------------cccccceEEEEEEEe-cCCCcC-CCCCCC-cHHHHHHHHHHHHh
Q 020439 192 EAIFGLHVSSLFPVGTVASRP-G-------------PTLAAGGFFEAVING-KGGHAA-IPQHTI-DPIVAASNVIVSLQ 254 (326)
Q Consensus 192 d~~i~~~~~~~~~~g~~~~~~-g-------------~~~~G~~~~~i~~~G-~~~Hss-~p~~g~-NAi~~~~~~i~~l~ 254 (326)
++++..++ . ..|.+.... | ...+|..+++|+++| +++||+ .|+.|. |||..|+++|.++.
T Consensus 163 ~~~i~~e~--~-~~g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~~ 239 (485)
T PRK15026 163 DILINTDS--E-EEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHA 239 (485)
T ss_pred CEEEEeCC--C-CCCeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHhH
Confidence 77776543 2 223332111 0 011577899999999 999999 799999 99999999999854
Q ss_pred HhhhcccCCCCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHH
Q 020439 255 HLVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIV 316 (326)
Q Consensus 255 ~~~~~~~~~~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~ 316 (326)
+ ..+++++.|+||+..|+||++|++.+++|....+..+++.+.+.+.+.+..
T Consensus 240 ~----------~~~~~v~~i~GG~~~NaIp~~a~a~i~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (485)
T PRK15026 240 E----------ELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDALKSLVNTYQEILKNEL 291 (485)
T ss_pred h----------hCCeEEEEEeCCCccCCCCCCcEEEEEEChhHHHHHHHHHHHHHHHHHHHh
Confidence 2 268999999999999999999999999998877777877777777766543
No 55
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=2e-34 Score=274.22 Aligned_cols=254 Identities=15% Similarity=0.157 Sum_probs=195.3
Q ss_pred HHHHHHHHHhhhC---------CCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCC--CCcEEEEEeecCccc
Q 020439 50 YWMVNIRRKIHEN---------PELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG--QPPFVALRADMDALA 118 (326)
Q Consensus 50 ~~~i~~l~~l~~i---------ps~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~I~l~~H~DtVp 118 (326)
+++++.+.+|.+| ||+|++|.++++||.++|+++||+++.. ...|+++++++. ++|+|+|+|||||||
T Consensus 9 ~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~-~~~nlia~~~g~~~~~~~l~~~~H~DtVp 87 (414)
T PRK12890 9 ERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRD-AAGNLFGRLPGRDPDLPPLMTGSHLDTVP 87 (414)
T ss_pred HHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEc-CCCcEEEEeCCCCCCCCEEEEeCcccCCC
Confidence 3445555555544 5889999999999999999999999875 357999999653 358999999999999
Q ss_pred CcCCCCCcccCccCCeeecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCC-c-----ccHHHHHHc-------
Q 020439 119 MEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEG-G-----GGAKKMLDA------- 185 (326)
Q Consensus 119 ~~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~-----~G~~~l~~~------- 185 (326)
++. . .++|++++++|+|++.|++.+..++++|.|++++|||+ + .|++++.+.
T Consensus 88 ~~g------------~---~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~~~~~~ 152 (414)
T PRK12890 88 NGG------------R---YDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLDVEAVL 152 (414)
T ss_pred CCC------------C---cCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHcccChHHHH
Confidence 742 1 13478999999999999988878899999999999994 2 577665432
Q ss_pred -----------------cCCccccEE-------------EEecccCCC---CCcceeeccccccccceEEEEEEEecCCC
Q 020439 186 -----------------GALENVEAI-------------FGLHVSSLF---PVGTVASRPGPTLAAGGFFEAVINGKGGH 232 (326)
Q Consensus 186 -----------------g~~~~~d~~-------------i~~~~~~~~---~~g~~~~~~g~~~~G~~~~~i~~~G~~~H 232 (326)
|. ..|++ +.+|.+.+. +.+. ......+++|..+++|+++|+++|
T Consensus 153 ~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~ep~~~~~~~~~h~~~g~~~~~~~~-~~~i~~~~kG~~~~~i~v~Gk~aH 229 (414)
T PRK12890 153 ATRDDDGTTLAEALRRIGG--DPDALPGALRPPGAVAAFLELHIEQGPVLEAEGL-PIGVVTAIQGIRRQAVTVEGEANH 229 (414)
T ss_pred hccCCCCCCHHHHHHHcCC--ChhhccccccCCCCccEEEEEeeCcCHHHHhCCC-ceEEEEeecCcEEEEEEEEEECCC
Confidence 21 11221 111211110 0111 112245679999999999999999
Q ss_pred cCC-CC-CCCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcC-CccccccCeEEEEEEEEccChhhHHHHHHHHH
Q 020439 233 AAI-PQ-HTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGG-GAFNIIPDSVTIGGTFRAFSKESIIQLKQRIE 309 (326)
Q Consensus 233 ss~-p~-~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG-~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~ 309 (326)
+|. |+ .+.|||..+++++.+|+++..+.. .+.+++++.|++| ...|+||++|++++|+|+.|.++.+++.++|+
T Consensus 230 as~~P~~~g~nAI~~~~~~i~~l~~~~~~~~---~~~~~~~g~i~~gg~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~ 306 (414)
T PRK12890 230 AGTTPMDLRRDALVAAAELVTAMERRARALL---HDLVATVGRLDVEPNAINVVPGRVVFTLDLRSPDDAVLEAAEAALL 306 (414)
T ss_pred CCcCChhhccCHHHHHHHHHHHHHHHHHhcC---CCeEEEEEEEEECCCCceEECCeEEEEEEeeCCCHHHHHHHHHHHH
Confidence 984 85 458999999999999988753321 3568899999975 79999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeeee
Q 020439 310 EVHLLIVANSNSFYSW 325 (326)
Q Consensus 310 ~~~~~~~~~~~~~~~~ 325 (326)
+++++.+..++++++|
T Consensus 307 ~~~~~~~~~~~~~~~~ 322 (414)
T PRK12890 307 AELEAIAAARGVRIEL 322 (414)
T ss_pred HHHHHHHHHhCCeEEE
Confidence 9999988887777665
No 56
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=100.00 E-value=5.4e-34 Score=275.65 Aligned_cols=259 Identities=17% Similarity=0.138 Sum_probs=199.5
Q ss_pred HHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCC----CCcEEEEEeecCcccCcCC---
Q 020439 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG----QPPFVALRADMDALAMEES--- 122 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~----~~~~I~l~~H~DtVp~~~~--- 122 (326)
+++++++++|++|||+|++|.++++|+.++|+++|++++++. ..|+++++++. +.|+|+|.|||||||++..
T Consensus 4 ~~~~~~l~~l~~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~-~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~ 82 (477)
T TIGR01893 4 SRVFKYFEEISKIPRPSKNEKEVSNFIVNWAKKLGLEVKQDE-VGNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSL 82 (477)
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHcCCeEEEeC-CCeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCC
Confidence 678999999999999999999999999999999999988764 57999998532 2489999999999998753
Q ss_pred CCCccc----CccCCeeecCCc------hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccc
Q 020439 123 VEWEHK----SKVPGKMHACGH------DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENV 191 (326)
Q Consensus 123 ~~w~~~----~~~~g~l~GrG~------k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~ 191 (326)
..|..+ ..+||++||||+ |++++++|++++. .+ .++++|.++|++||| ++.|++++..+.. ..
T Consensus 83 ~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~~-~~~~~i~~~~~~dEE~g~~Gs~~l~~~~~--~~ 156 (477)
T TIGR01893 83 HDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---NN-LKHPPLELLFTVDEETGMDGALGLDENWL--SG 156 (477)
T ss_pred CCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---CC-CCCCCEEEEEEeccccCchhhhhcChhhc--CC
Confidence 357544 256899999995 6888888887654 33 356799999999999 5689999876533 22
Q ss_pred cEEEEecccC------CCCCcc-e--eeccc--cccccceEEEEEEEe-cCCCcC-CCCCCC-cHHHHHHHHHHHHhHhh
Q 020439 192 EAIFGLHVSS------LFPVGT-V--ASRPG--PTLAAGGFFEAVING-KGGHAA-IPQHTI-DPIVAASNVIVSLQHLV 257 (326)
Q Consensus 192 d~~i~~~~~~------~~~~g~-~--~~~~g--~~~~G~~~~~i~~~G-~~~Hss-~p~~g~-NAi~~~~~~i~~l~~~~ 257 (326)
+.++..+... +.+.+. . .+... ..++|..+++|+++| +++|+| .|+.|. ||+..++++|.++++..
T Consensus 157 ~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~~~~ 236 (477)
T TIGR01893 157 KILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGADIHKGRANANKLMARVLNELKENL 236 (477)
T ss_pred cEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCccccCCCCcCHHHHHHHHHHhhhhcC
Confidence 3333322100 111111 0 00000 114789999999999 999998 588884 99999999999998642
Q ss_pred hcccCCCCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHH--HcCCeeee
Q 020439 258 SREADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVA--NSNSFYSW 325 (326)
Q Consensus 258 ~~~~~~~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~ 325 (326)
..+++.+.||...|+||++|++.+|+|.......+++.+.+.+.+++.++ ..+++++|
T Consensus 237 ----------~~~v~~~~gg~~~N~ip~~~~~~~diR~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (477)
T TIGR01893 237 ----------NFRLSDIKGGSKRNAIPREAKALIAIDENDVKLLENLVKNFQSKFKSEYSELEPNITIEV 296 (477)
T ss_pred ----------CeEEEEEeCCCcccccCCceEEEEEEChhHHHHHHHHHHHHHHHHHHHhcccCCCeEEEE
Confidence 36789999999999999999999999998888888888888888887773 35666554
No 57
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-34 Score=255.94 Aligned_cols=261 Identities=17% Similarity=0.183 Sum_probs=205.6
Q ss_pred HHHHHHHHHhhhCCCCCcc--hH-HHHHHHHHHHhhcCCCeee---cccCceEEEEECCC-C-CcEEEEEeecCcccCcC
Q 020439 50 YWMVNIRRKIHENPELGFQ--EF-ETSKLIRAELDQMGIPYKF---PVAVTGVVGYIGTG-Q-PPFVALRADMDALAMEE 121 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~--e~-~~~~~l~~~l~~~G~~~~~---~~~~~nvia~~~~~-~-~~~I~l~~H~DtVp~~~ 121 (326)
...+..+++.+|||++-.+ -. .+++|+..+.+.+|..++. .++.++++.+|.|+ + -++|+|++|+||||+..
T Consensus 25 ~~~v~~f~eylRi~Tv~p~~dy~~a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~silL~SH~DVVP~f~ 104 (420)
T KOG2275|consen 25 NISVTRFREYLRIPTVQPNPDYTIACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELPSILLNSHTDVVPVFR 104 (420)
T ss_pred chHHHHHHHHhhccccccCCCccHHHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCccceeeeccccccCCCc
Confidence 5678888889999987543 23 7899999999999998754 45578888888554 3 48999999999999865
Q ss_pred CCCCcccC-----ccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-C-cccHHHHHHccCCccc
Q 020439 122 SVEWEHKS-----KVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-G-GGGAKKMLDAGALENV 191 (326)
Q Consensus 122 ~~~w~~~~-----~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~-~~G~~~l~~~g~~~~~ 191 (326)
+.|++++ .+||.|||||+ |+..+++|+|++.|+..+.++.++|.+.|++||| + ..|++.+++...+.+.
T Consensus 105 -e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~~~~~~~l 183 (420)
T KOG2275|consen 105 -EKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAKTEEFKKL 183 (420)
T ss_pred -ccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhhhhhhccc
Confidence 4898763 36799999998 8999999999999999999999999999999999 4 4799999884445444
Q ss_pred cEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhccc-----C----
Q 020439 192 EAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA-----D---- 262 (326)
Q Consensus 192 d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~-----~---- 262 (326)
...+.++. +.++..-...++.++||..|++|++.|+++|+|.|.. ..|+..+.+++..+.+....+. .
T Consensus 184 ~~~filDE--G~~se~d~~~vfyaEkg~w~~~v~~~G~~GHss~~~~-nTa~~~l~klv~~~~~fr~~q~~~l~~~p~~~ 260 (420)
T KOG2275|consen 184 NLGFILDE--GGATENDFATVFYAEKGPWWLKVTANGTPGHSSYPPP-NTAIEKLEKLVESLEEFREKQVDLLASGPKLA 260 (420)
T ss_pred ceeEEecC--CCCCcccceeEEEEeeceeEEEEEecCCCCCCCCCCC-ccHHHHHHHHHHHHHHhHHHHHHHhhcCCcee
Confidence 44444322 2233222245678899999999999999999997322 3567777777777766542111 1
Q ss_pred CCCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHH-HHHHHH
Q 020439 263 PLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRI-EEVHLL 314 (326)
Q Consensus 263 ~~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i-~~~~~~ 314 (326)
-.+.+|+|++.|+||.+.|++|...++.+|+|..|..+..++.+++ ++++++
T Consensus 261 ~~~vtT~Nv~~i~GGv~~N~~P~~~ea~~dirv~~~~d~~~i~~~l~~~w~~~ 313 (420)
T KOG2275|consen 261 LGDVTTINVGIINGGVQSNVLPETFEAAFDIRVRPHVDVKAIRDQLEDEWAEE 313 (420)
T ss_pred ccceeEEeeeeeecccccCcCchhheeeeeeEeccCCCHHHHHHHHHHHhhhh
Confidence 2467899999999999999999999999999999999999999998 555443
No 58
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=100.00 E-value=4.4e-33 Score=263.89 Aligned_cols=242 Identities=21% Similarity=0.262 Sum_probs=190.8
Q ss_pred CCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCC-C-CcEEEEEeecCcccCcCCCCCcccCccCCeeecCCch
Q 020439 64 ELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG-Q-PPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHD 141 (326)
Q Consensus 64 s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~-~-~~~I~l~~H~DtVp~~~~~~w~~~~~~~g~l~GrG~k 141 (326)
|+|++|.++++||+++|+++|++++.+ ...|++++++++ + +|+|+|+||+||||.+ |+.+|+
T Consensus 25 ~~~~~e~~~~~~l~~~~~~~G~~~~~~-~~~nl~a~~~g~~~~~~~l~~~~H~DtV~~g------------g~~dg~--- 88 (401)
T TIGR01879 25 ALSPEDREAQDLFKKRMRAAGLEVRFD-EVGNLIGRKEGTEPPLEVVLSGSHIDTVVNG------------GNFDGQ--- 88 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEe-cCCcEEEEecCCCCCCCEEEEecccccCCCC------------CccCCH---
Confidence 457889999999999999999999865 357999999754 2 4899999999999974 334443
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEEecCCCC------cccHHHHHHccCC---------------------------
Q 020439 142 AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEG------GGGAKKMLDAGAL--------------------------- 188 (326)
Q Consensus 142 ~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~------~~G~~~l~~~g~~--------------------------- 188 (326)
.|++++|+++++|++.+.+++++|.|++++|||+ ..|++.++.+...
T Consensus 89 ~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 168 (401)
T TIGR01879 89 LGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLANPEDVRNICDAKGISFAEAMKACGPDLPN 168 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccHHHHhcccchhHHHhCcCCCCCCHHHHHHHcCCCccc
Confidence 5889999999999999988999999999999995 2688887642100
Q ss_pred ------ccccEEEEecccCC---CCCcceeeccccccccceEEEEEEEecCCCcCC-CC-CCCcHHHHHHHHHHHHhHhh
Q 020439 189 ------ENVEAIFGLHVSSL---FPVGTVASRPGPTLAAGGFFEAVINGKGGHAAI-PQ-HTIDPIVAASNVIVSLQHLV 257 (326)
Q Consensus 189 ------~~~d~~i~~~~~~~---~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~-p~-~g~NAi~~~~~~i~~l~~~~ 257 (326)
.++++.+.+|.+.+ ++.|. ......+++|..|++|+++|+++|++. |+ .|.||+..+++++.+|+++.
T Consensus 169 ~~~~~~~~~~~~~e~Hieqg~~l~~~g~-~~~v~~~~~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~ 247 (401)
T TIGR01879 169 QPLRPRGDIKAYVELHIEQGPVLESNGQ-PIGVVNAIAGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEKA 247 (401)
T ss_pred ccccccccccEEEEEEEcCCcChhhCCC-eEEEEEEecCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHH
Confidence 01123344444433 11121 112345679999999999999999985 53 58999999999999998875
Q ss_pred hcccCCCCCceEEEEEEEcC-CccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeee
Q 020439 258 SREADPLDSQVLTVAKFEGG-GAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 258 ~~~~~~~~~~t~~i~~i~gG-~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
.+.. .+.+.+++.|++| ...|+||++|++.+|+|+.|+++.+++.++|++.+++.+..+++++++
T Consensus 248 ~~~~---~~~~~~vg~i~~g~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~~~~~~~~~~~~~~~ 313 (401)
T TIGR01879 248 KRMG---DPTVGTVGKVEARPNGVNVIPGKVTFTLDLRHTDAAVLRDFTQQLENDIKAISDERDIGIDI 313 (401)
T ss_pred HhcC---CCeEEEEEEEEecCCceEEECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCceEEE
Confidence 4321 2357899999985 679999999999999999999999999999999999988887776654
No 59
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=100.00 E-value=4e-31 Score=250.34 Aligned_cols=256 Identities=14% Similarity=0.148 Sum_probs=202.4
Q ss_pred HHHHHHHHHhhhC-CC---------CCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCC--CCcEEEEEeecCcc
Q 020439 50 YWMVNIRRKIHEN-PE---------LGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG--QPPFVALRADMDAL 117 (326)
Q Consensus 50 ~~~i~~l~~l~~i-ps---------~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~I~l~~H~DtV 117 (326)
+++.+.+.+|-++ .. .|.++.++.+|+.+||+++|++++.+. -+|+++++++. +.|+|++.+|||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~D~-~gN~~~~~~g~~~~~~~i~~gsHlDtv 81 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRFDD-VGNLYGRLVGTEFPEETILTGSHIDTV 81 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEEcC-CCcEEEEecCCCCCCCeEEEeccccCC
Confidence 4566666666665 22 244578999999999999999998665 57999999764 24899999999999
Q ss_pred cCcCCCCCcccCccCCeeecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCC------cccHHHHHHc------
Q 020439 118 AMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEG------GGGAKKMLDA------ 185 (326)
Q Consensus 118 p~~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~------~~G~~~l~~~------ 185 (326)
|.+. ..||. .|+++.|++++.|++++.+++++|.+++.++||+ ..|++.+...
T Consensus 82 ~~gG--------~~dg~-------~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~~~~~ 146 (406)
T TIGR03176 82 VNGG--------NLDGQ-------FGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAKPEDV 146 (406)
T ss_pred CCCC--------ccCch-------hhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHHHhCCCCHHHH
Confidence 9763 12344 7899999999999999889999999999999996 4677777520
Q ss_pred ------------------cC--------CccccEEEEecccCCCC---CcceeeccccccccceEEEEEEEecCCCcCCC
Q 020439 186 ------------------GA--------LENVEAIFGLHVSSLFP---VGTVASRPGPTLAAGGFFEAVINGKGGHAAIP 236 (326)
Q Consensus 186 ------------------g~--------~~~~d~~i~~~~~~~~~---~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p 236 (326)
|+ ..++++.+.+|.+.+.- .|. .+....+++|..+++|+++|+++|+|.|
T Consensus 147 ~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~elHieqG~~Le~~g~-~igiv~~~~G~~~~~v~v~GkaaHag~~ 225 (406)
T TIGR03176 147 RTIEDAKGIKFVDAMHACGFDLRKAPTVRDDIKAFVELHIEQGCVLESEGQ-SIGVVNAIVGQRRYTVNLKGEANHAGTT 225 (406)
T ss_pred HhCcCCCCCCHHHHHHHcCCCcccccccccccceEEEEEECCCcchHHCCC-eEEEEeecccceEEEEEEEEECCCCCCC
Confidence 11 01356778888865521 222 1222356789999999999999999975
Q ss_pred CC--CCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEE-cCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHH
Q 020439 237 QH--TIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFE-GGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHL 313 (326)
Q Consensus 237 ~~--g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~-gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 313 (326)
.. +.||+..+++++..+.++..+. ..+.++|++.|+ +|+..|+||++|++++|+|++|.++.+++.+++++.++
T Consensus 226 p~~~r~dAi~aaa~~i~~l~~~~~~~---~~~~~~tvG~I~~gg~~~NvIP~~a~~~~DiR~~~~~~~e~v~~~i~~~i~ 302 (406)
T TIGR03176 226 PMSYRRDTVYAFSRICTQSIERAKEI---GDPLVLTFGKVEPVPNTVNVVPGETTFTIDCRHTDAAVLRNFTKELENDMK 302 (406)
T ss_pred CcccccCHHHHHHHHHHHHHHHHHhc---CCCcEEEEEEEEEcCCceEEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHH
Confidence 54 4899999999999998764321 234689999999 57899999999999999999999999999999999999
Q ss_pred HHHHHcCCeeee
Q 020439 314 LIVANSNSFYSW 325 (326)
Q Consensus 314 ~~~~~~~~~~~~ 325 (326)
++++++++++++
T Consensus 303 ~ia~~~g~~~ei 314 (406)
T TIGR03176 303 AIADEMDITIDI 314 (406)
T ss_pred HHHHHcCCeEEE
Confidence 999998887664
No 60
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=100.00 E-value=1.4e-30 Score=256.58 Aligned_cols=261 Identities=17% Similarity=0.176 Sum_probs=207.9
Q ss_pred chhHHHHHHHHHHhhhCCCC-------------CcchHHHHHHHHHHHhhcCCC-eeecccCceEEEEECCC--CCcEEE
Q 020439 46 PEIFYWMVNIRRKIHENPEL-------------GFQEFETSKLIRAELDQMGIP-YKFPVAVTGVVGYIGTG--QPPFVA 109 (326)
Q Consensus 46 ~~~~~~~i~~l~~l~~ips~-------------s~~e~~~~~~l~~~l~~~G~~-~~~~~~~~nvia~~~~~--~~~~I~ 109 (326)
..|.+++.+.+.+|.+|+.+ |.++.++.+|+.+||+++|++ ++.+. -+|+++++++. +.|+|+
T Consensus 177 ~~~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~-~gNv~~~~~g~~~~~p~v~ 255 (591)
T PRK13799 177 PAIGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDA-VGNVVGRYKAADDDAKTLI 255 (591)
T ss_pred hhHHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECC-CCCEEEEcCCCCCCCCeEE
Confidence 45668889999999999632 234579999999999999998 98664 58999999653 358999
Q ss_pred EEeecCcccCcCCCCCcccCccCCeeecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCC------cccHHHHH
Q 020439 110 LRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEG------GGGAKKML 183 (326)
Q Consensus 110 l~~H~DtVp~~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~------~~G~~~l~ 183 (326)
+.+|+||||.+ |+.+|+ .|++++|++++.|++.+.+++++|.|++.+|||+ +.|++.+.
T Consensus 256 ~gSHlDTV~~g------------G~~DG~---~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~~GS~~~~ 320 (591)
T PRK13799 256 TGSHYDTVRNG------------GKYDGR---EGIFLAIACVKELHEQGERLPFHFEVIAFAEEEGQRFKATFLGSGALI 320 (591)
T ss_pred EeccccccCCC------------CccccH---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCccCCCccccchHHHh
Confidence 99999999864 666665 8999999999999999999999999999999996 25777665
Q ss_pred --------H----ccC---------------C-------ccccEEEEecccCCC---CCcceeeccccccccceEEEEEE
Q 020439 184 --------D----AGA---------------L-------ENVEAIFGLHVSSLF---PVGTVASRPGPTLAAGGFFEAVI 226 (326)
Q Consensus 184 --------~----~g~---------------~-------~~~d~~i~~~~~~~~---~~g~~~~~~g~~~~G~~~~~i~~ 226 (326)
+ +|. . .++++.+.+|++++. ..|. .+....+++|..+++|++
T Consensus 321 G~~~~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~~~~~~a~~ElHIEQgp~Le~~~~-~igvV~g~~G~~~~~Itv 399 (591)
T PRK13799 321 GDFNMELLDIKDADGISLREAIQHAGHCIDAIPKIARDPADVLGFIEVHIEQGPVLLELDI-PLGIVTSIAGSARYICEF 399 (591)
T ss_pred CCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCC-cEEEEeeeccceEEEEEE
Confidence 1 121 0 145577778877761 1111 122235678999999999
Q ss_pred EecCCCcCC-CC-CCCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcC-CccccccCeEEEEEEEEccChhhHHH
Q 020439 227 NGKGGHAAI-PQ-HTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGG-GAFNIIPDSVTIGGTFRAFSKESIIQ 303 (326)
Q Consensus 227 ~G~~~Hss~-p~-~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG-~~~n~iP~~~~~~~diR~~~~~~~~~ 303 (326)
+|+++|+|. |. .+.||+..+++++..++++..+ .+....+++++.|+++ ...|+||++|++.+|+|+.|.++.++
T Consensus 400 ~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~--~~~~~~v~tVG~I~~~~ga~NvIP~~a~~~~DiR~~~~e~~e~ 477 (591)
T PRK13799 400 IGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQ--DQHASLVATMGQLNVPSGSTNVIPGRCQFSLDIRAATDEIRDA 477 (591)
T ss_pred EEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHh--cCCCCcEEEEEEEEecCCCCceECCEEEEEEEeeCCCHHHHHH
Confidence 999999995 53 5899999999999999887543 2223357899999863 48999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCeeee
Q 020439 304 LKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 304 ~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
+.+++++.++++++.+++++++
T Consensus 478 l~~~i~~~i~~ia~~~g~~~ei 499 (591)
T PRK13799 478 AVADILAEIAAIAARRGIEYKA 499 (591)
T ss_pred HHHHHHHHHHHHHHHhCCeEEE
Confidence 9999999999999998877654
No 61
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=100.00 E-value=2.2e-30 Score=255.27 Aligned_cols=258 Identities=15% Similarity=0.130 Sum_probs=202.7
Q ss_pred hhHHHHHHHHHHhhhCCCC-------------CcchHHHHHHHHHHHhhcCC-CeeecccCceEEEEECCC-C-CcEEEE
Q 020439 47 EIFYWMVNIRRKIHENPEL-------------GFQEFETSKLIRAELDQMGI-PYKFPVAVTGVVGYIGTG-Q-PPFVAL 110 (326)
Q Consensus 47 ~~~~~~i~~l~~l~~ips~-------------s~~e~~~~~~l~~~l~~~G~-~~~~~~~~~nvia~~~~~-~-~~~I~l 110 (326)
.+.+++.+.+.+|-+|+.+ |.++.++++|+.+||+++|+ +++.+. -+|+++++++. + .|+|++
T Consensus 178 ~~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D~-~GNl~~~~~g~~~~~~~v~~ 256 (591)
T PRK13590 178 VLGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHIDA-VGNVVGRYKGSTPQAKRLLT 256 (591)
T ss_pred hHHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeECC-CCCEEEEecCCCCCCCeEEE
Confidence 4457888888899888653 23457999999999999999 887664 58999999653 3 389999
Q ss_pred EeecCcccCcCCCCCcccCccCCeeecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCC------cccHHHH--
Q 020439 111 RADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEG------GGGAKKM-- 182 (326)
Q Consensus 111 ~~H~DtVp~~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~------~~G~~~l-- 182 (326)
.+||||||.+ |+.+| ++|++++|++++.|++.+..++++|.|++++|||+ +.|++.+
T Consensus 257 gsHlDTV~~g------------G~~DG---~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~~GS~~~~G 321 (591)
T PRK13590 257 GSHYDTVRNG------------GKYDG---RLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEGQRYKATFLGSGALIG 321 (591)
T ss_pred ecccccCCCC------------CCccc---HHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCccccCCccccchHHHhC
Confidence 9999999965 44333 39999999999999999988889999999999996 3577752
Q ss_pred ------HH---------------ccC-----------CccccEEEEecccCCCC---CcceeeccccccccceEEEEEEE
Q 020439 183 ------LD---------------AGA-----------LENVEAIFGLHVSSLFP---VGTVASRPGPTLAAGGFFEAVIN 227 (326)
Q Consensus 183 ------~~---------------~g~-----------~~~~d~~i~~~~~~~~~---~g~~~~~~g~~~~G~~~~~i~~~ 227 (326)
++ .|+ .+++.+.+.+|.+++.- .|. .+...++++|..+++|+++
T Consensus 322 ~~~~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~~~~~~a~~ElHiEqg~~Le~~~~-~~gvV~~~~G~~~~~v~v~ 400 (591)
T PRK13590 322 DFDPAWLDQKDADGITMREAMQHAGLCIDDIPKLRRDPARYLGFVEVHIEQGPVLNELDL-PLGIVTSINGSVRYVGEMI 400 (591)
T ss_pred CChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCC-ceEEEeeeeccEEEEEEEE
Confidence 22 111 01345677788877611 121 1122345689999999999
Q ss_pred ecCCCcCC-CCC-CCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEc-CCccccccCeEEEEEEEEccChhhHHHH
Q 020439 228 GKGGHAAI-PQH-TIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEG-GGAFNIIPDSVTIGGTFRAFSKESIIQL 304 (326)
Q Consensus 228 G~~~Hss~-p~~-g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~g-G~~~n~iP~~~~~~~diR~~~~~~~~~~ 304 (326)
|+++|+|. |.. +.||+..+++++..+++.... ....+.+++.|++ |...|+||++|++++|+|+.+.++.+++
T Consensus 401 GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~----~~~~v~tVG~i~~~Gg~~NVIP~~a~~~iDiR~~~~e~~e~v 476 (591)
T PRK13590 401 GMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ----DGDSVGTVGMLEVPGGSINVVPGRCRFSLDIRAPTDAQRDAM 476 (591)
T ss_pred eECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc----CCCcEEEEEEEEECCCCCceECCEEEEEEEeeCCCHHHHHHH
Confidence 99999995 544 689999999999999876422 1234779999884 6689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCeeee
Q 020439 305 KQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~~~~ 325 (326)
.+++++.++++++.+++++++
T Consensus 477 ~~~i~~~i~~ia~~~g~~vei 497 (591)
T PRK13590 477 VADVLAELEAICERRGLRYTL 497 (591)
T ss_pred HHHHHHHHHHHHHHcCCeEEE
Confidence 999999999999999888775
No 62
>PRK08554 peptidase; Reviewed
Probab=99.98 E-value=1.2e-30 Score=249.16 Aligned_cols=252 Identities=21% Similarity=0.212 Sum_probs=174.5
Q ss_pred HHHHHHHHhhhCCCCCcc------hHHHHHHHHHHHhhcCCCeeec--ccCceEEEEECCCCCcEEEEEeecCcccCcCC
Q 020439 51 WMVNIRRKIHENPELGFQ------EFETSKLIRAELDQMGIPYKFP--VAVTGVVGYIGTGQPPFVALRADMDALAMEES 122 (326)
Q Consensus 51 ~~i~~l~~l~~ips~s~~------e~~~~~~l~~~l~~~G~~~~~~--~~~~nvia~~~~~~~~~I~l~~H~DtVp~~~~ 122 (326)
++++++++|++|||+++. +.++++|+.++|+++||+++.. .+++|+++.++++ .++|+|+||+||||+++
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~l~~~~~~~-~~~l~l~gH~DtVp~~~- 79 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKDGYYAVYGEIGEG-KPKLLFMAHFDVVPVNP- 79 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecCCceEEEEEeCCC-CCEEEEEeccccCCCCc-
Confidence 478899999999998753 4789999999999999998653 2457899988544 37899999999999875
Q ss_pred CCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccC--Ccccc
Q 020439 123 VEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGA--LENVE 192 (326)
Q Consensus 123 ~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~--~~~~d 192 (326)
..|.++ .++||++||||+ ||+++++|+|+++|++. .++++|.|+|++||| ++.++.++++... ....|
T Consensus 80 ~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~~~~~i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~ 157 (438)
T PRK08554 80 EEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--PLNGKVIFAFTGDEEIGGAMAMHIAEKLREEGKLPK 157 (438)
T ss_pred cccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccCccccHHHHHHHHhcCCCCC
Confidence 357644 256899999996 99999999999999874 367899999999999 5555556655321 12457
Q ss_pred EEEEecccCCCCCcceeeccccccccce--------------------EEEEEEEecC-CCcCCCCCCCc--HHHHHHHH
Q 020439 193 AIFGLHVSSLFPVGTVASRPGPTLAAGG--------------------FFEAVINGKG-GHAAIPQHTID--PIVAASNV 249 (326)
Q Consensus 193 ~~i~~~~~~~~~~g~~~~~~g~~~~G~~--------------------~~~i~~~G~~-~Hss~p~~g~N--Ai~~~~~~ 249 (326)
+++..+ |++... ...+++.. ++.+++.|.+ +|++.|..|.| |+..+.++
T Consensus 158 ~~iv~E-----pt~~~~---~~~~~kg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~~ 229 (438)
T PRK08554 158 YMINAD-----GIGMKP---IIRRRKGFGVTIRVPSEKVKVKGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASHF 229 (438)
T ss_pred EEEEeC-----CCCCcc---hhhcCCceEEEEEecccccccccceeeeeeceeecccCccccccccCCcCchHHHHHHHH
Confidence 776532 222210 11112222 3444455554 99997766665 58888888
Q ss_pred HHHHhHhhhcc----c-C--CCCCceEEEEEEEcCC-----------------------------------ccccc---c
Q 020439 250 IVSLQHLVSRE----A-D--PLDSQVLTVAKFEGGG-----------------------------------AFNII---P 284 (326)
Q Consensus 250 i~~l~~~~~~~----~-~--~~~~~t~~i~~i~gG~-----------------------------------~~n~i---P 284 (326)
+.++..+.... . . +....++++....+|. ..|++ |
T Consensus 230 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~g~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~n~~~i~~ 309 (438)
T PRK08554 230 LRESNVLAVSLEGKFLKGNVVPGEVTLTYLEPGEGEEVEVDLGLTRLLKAIVPLVRAPIKAEKYSDYGVSITPNVYSFAE 309 (438)
T ss_pred HhhcCceEEEEeeeeeecCcccceeEEEEecCCCCccccccccHHHHHHHHHHHHHHhhccccccccceeeccceEEecC
Confidence 87765432100 0 0 1112233332222333 45666 9
Q ss_pred CeEEEEEEEEccChhhHHHHHHHHHHHHHHH
Q 020439 285 DSVTIGGTFRAFSKESIIQLKQRIEEVHLLI 315 (326)
Q Consensus 285 ~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~ 315 (326)
++|++++|+|+.| .+.+++.++|++.+++.
T Consensus 310 g~a~~~~DiR~~~-~~~e~v~~~i~~~~~~~ 339 (438)
T PRK08554 310 GKHVLKLDIRAMS-YSKEDIERTLKEVLEFN 339 (438)
T ss_pred CeEEEEEEEEecC-CCHHHHHHHHHHHhhcc
Confidence 9999999999988 68899999999988654
No 63
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.97 E-value=2e-29 Score=225.73 Aligned_cols=281 Identities=20% Similarity=0.246 Sum_probs=217.3
Q ss_pred cHHHHHhhcCchhHHHHHHHHHHhhhCCCCCcch------HHHHHHHHHHHhhcCCCeeec-------------ccCceE
Q 020439 36 PVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQE------FETSKLIRAELDQMGIPYKFP-------------VAVTGV 96 (326)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~~e------~~~~~~l~~~l~~~G~~~~~~-------------~~~~nv 96 (326)
..++.+++|.++ +++++.|++.++|+|+|.+. .++++|++++++++|-+++.. +..+-+
T Consensus 4 l~~~fq~id~~~--de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvv 81 (473)
T KOG2276|consen 4 LTKVFQSIDLNK--DEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVV 81 (473)
T ss_pred HHHHHHHhhccH--HHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhh
Confidence 457889999999 99999999999999999754 689999999999999776652 112346
Q ss_pred EEEECCCC-CcEEEEEeecCcccCcCCCCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEE
Q 020439 97 VGYIGTGQ-PPFVALRADMDALAMEESVEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLV 168 (326)
Q Consensus 97 ia~~~~~~-~~~I~l~~H~DtVp~~~~~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~ 168 (326)
.+++|+.+ .++++++|||||+|++..++|.++ +++||++||||+ ||++++.+.|++++++.++.++.||.|+
T Consensus 82 l~~~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~ 161 (473)
T KOG2276|consen 82 LGVLGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFV 161 (473)
T ss_pred hhcccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEE
Confidence 67777653 489999999999999989999766 467899999998 7999999999999999999999999999
Q ss_pred EecCCC-CcccHHHHHHc---cCCccccEEEEecccCCCCCcceeeccccccccceEEEEEEEe--cCCCcCC-CCCCCc
Q 020439 169 FQPAEE-GGGGAKKMLDA---GALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVING--KGGHAAI-PQHTID 241 (326)
Q Consensus 169 ~~~dEE-~~~G~~~l~~~---g~~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G--~~~Hss~-p~~g~N 241 (326)
|.+-|| |+.|...++++ .++.++|+++.- +....|+-.-....+.+|.+-+.|+|+| +..||+. ...-.-
T Consensus 162 ~EgmEEsgS~~L~~l~~~~kD~~~~~vD~vciS---dnyWlg~kkPcltyGlRG~~yf~i~v~g~~~DlHSGvfGG~~hE 238 (473)
T KOG2276|consen 162 FEGMEESGSEGLDELIEKEKDKFFKDVDFVCIS---DNYWLGTKKPCLTYGLRGVIYFQIEVEGPSKDLHSGVFGGVVHE 238 (473)
T ss_pred EEechhccCccHHHHHHHHhhhhhccCCEEEee---CceeccCCCcccccccccceeEEEEEeecccccccccccchhHH
Confidence 999999 77787777764 456789988753 2233332211123345799999999999 7789994 333335
Q ss_pred HHHHHHHHHHHHhHhhhcc----------------------cC---------------C-----------CCCceEEEEE
Q 020439 242 PIVAASNVIVSLQHLVSRE----------------------AD---------------P-----------LDSQVLTVAK 273 (326)
Q Consensus 242 Ai~~~~~~i~~l~~~~~~~----------------------~~---------------~-----------~~~~t~~i~~ 273 (326)
|+..|..++..|.....+. .+ + =..+++++..
T Consensus 239 ~m~dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~l~~~~k~~~l~~rWryPSLsihg 318 (473)
T KOG2276|consen 239 AMNDLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQMLPTDDKKRILMHRWRYPSLSIHG 318 (473)
T ss_pred HHHHHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhccccccccccCchHHHhhhhcccCccceec
Confidence 6666666666655321110 00 0 0134777777
Q ss_pred EEc----CCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCC
Q 020439 274 FEG----GGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNS 321 (326)
Q Consensus 274 i~g----G~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~ 321 (326)
|+| ..+..+||.++...|.+|+.|.++++.+.+.+.+.+++.-++.+.
T Consensus 319 IeGaFs~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~~nS 370 (473)
T KOG2276|consen 319 IEGAFSGPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAELNS 370 (473)
T ss_pred ccceeeCCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 775 357889999999999999999999999999999999888766643
No 64
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=99.81 E-value=1.1e-18 Score=158.50 Aligned_cols=263 Identities=13% Similarity=0.112 Sum_probs=181.7
Q ss_pred HHHHHHHHHhhhCCCCCc--chHHHHHHHHHHHhhcCCCeee----------cc--cCceEEEEECCC-CCcEEEEEeec
Q 020439 50 YWMVNIRRKIHENPELGF--QEFETSKLIRAELDQMGIPYKF----------PV--AVTGVVGYIGTG-QPPFVALRADM 114 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~--~e~~~~~~l~~~l~~~G~~~~~----------~~--~~~nvia~~~~~-~~~~I~l~~H~ 114 (326)
+++.+++-+|++.||++| .|...+++|...|+++.+--+. .+ ++.|+.|.++++ ...+|++-||+
T Consensus 8 e~v~~lt~~LV~~~SvtgT~GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR~nv~AlVrg~~~k~tvvl~gH~ 87 (553)
T COG4187 8 ERVRALTLSLVSWPSVTGTPGEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGRRNVFALVRGGTSKRTVVLHGHF 87 (553)
T ss_pred HHHHHHHHHHeeccccCCCcccccHHHHHHHHHhcCchhhhChHhhcccCCCCCccccceeEEEEecCCCCceEEEeecc
Confidence 889999999999999987 5688999999999998752221 12 678999988664 45899999999
Q ss_pred CcccCcCCCCC---ccc----------------------CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEE
Q 020439 115 DALAMEESVEW---EHK----------------------SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIV 166 (326)
Q Consensus 115 DtVp~~~~~~w---~~~----------------------~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~ 166 (326)
|||...+-... -|+ -..+++++|||+ |+|+|+.|++++.+.+. ...+|||.
T Consensus 88 DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~~-~~~~GNlL 166 (553)
T COG4187 88 DTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAAR-TDRQGNLL 166 (553)
T ss_pred ceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhhC-CCCCCcEE
Confidence 99977542111 111 123689999997 89999999999998876 47899999
Q ss_pred EEEecCCC-CcccHHHHHHc--cCC--ccccEEEEecccCCCCC--cceeeccccccccceEEEEEEEecCCCcCCCCCC
Q 020439 167 LVFQPAEE-GGGGAKKMLDA--GAL--ENVEAIFGLHVSSLFPV--GTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHT 239 (326)
Q Consensus 167 ~~~~~dEE-~~~G~~~l~~~--g~~--~~~d~~i~~~~~~~~~~--g~~~~~~g~~~~G~~~~~i~~~G~~~Hss~p~~g 239 (326)
|+.++||| ...|++..+.. ++. .++++..+++.+...+. |.-.-...++..|..-.-.-+.|+..|.|.|..|
T Consensus 167 f~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtGtiGKLLp~f~vvG~etHvG~~f~G 246 (553)
T COG4187 167 FMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPFFFVVGCETHVGYPFEG 246 (553)
T ss_pred EEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEeccchhhcceeEEEeeccccCCcccC
Confidence 99999999 67888776542 111 13555555555443222 1111122345567788888899999999999999
Q ss_pred CcHHHHHHHHHHHHhHhh---hcccCCC-CCceE-EEEEEEcCCcccc-ccCeEEEEEEEEccChhhHHHHHHHHHHHHH
Q 020439 240 IDPIVAASNVIVSLQHLV---SREADPL-DSQVL-TVAKFEGGGAFNI-IPDSVTIGGTFRAFSKESIIQLKQRIEEVHL 313 (326)
Q Consensus 240 ~NAi~~~~~~i~~l~~~~---~~~~~~~-~~~t~-~i~~i~gG~~~n~-iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 313 (326)
+||...++.++..|+-.. .+..... .++++ .--.+ -++.|+ .|.++.+.|++=+. ..+..++.+.+++.++
T Consensus 247 vnan~maSei~~~le~N~~l~dr~~Ge~t~PPs~L~qkDl--Ke~Y~VqTp~~a~~~fN~l~h-~~ta~~~~d~l~~~a~ 323 (553)
T COG4187 247 VNANFMASEITRRLELNADLADRVDGEITPPPSCLEQKDL--KESYNVQTPERAWLYFNWLYH-SRTAKELFDRLKEEAE 323 (553)
T ss_pred CCHHHHHHHHHHHhhcChhhhhhhCCeeCCCcHhhhhhhh--hhhccccCcchhhhhheehhh-cCCHHHHHHHHHHHHH
Confidence 999999999999986432 1211111 11111 11111 123343 58889999998544 5677777777666665
Q ss_pred HHH
Q 020439 314 LIV 316 (326)
Q Consensus 314 ~~~ 316 (326)
+++
T Consensus 324 ~A~ 326 (553)
T COG4187 324 TAA 326 (553)
T ss_pred HHH
Confidence 554
No 65
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.81 E-value=3.3e-19 Score=138.35 Aligned_cols=105 Identities=28% Similarity=0.341 Sum_probs=96.1
Q ss_pred ccccceEEEEEEEecCCCcCCCCCCCcHHHHHHHHHHHHhHhhhccc-----CCCCCceEEEEEEEcCCccccccCeEEE
Q 020439 215 TLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA-----DPLDSQVLTVAKFEGGGAFNIIPDSVTI 289 (326)
Q Consensus 215 ~~~G~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~i~~l~~~~~~~~-----~~~~~~t~~i~~i~gG~~~n~iP~~~~~ 289 (326)
+++|..+++|+++|+++|+|.|+.|+||+..+++++.+|+++..+.. ......+++++.++||...|+||++|++
T Consensus 2 g~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~~~n~ip~~a~~ 81 (111)
T PF07687_consen 2 GHRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFRPEEFFPGPPTLNIGSIEGGTAPNVIPDEATL 81 (111)
T ss_dssp EEEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTSTHHHCTCTSEEEEEEEEEEESSTTEESSEEEE
T ss_pred cCCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccccccccccccceeEeecccCCcCCEECCEEEE
Confidence 46799999999999999999999999999999999999998754432 4457789999999999999999999999
Q ss_pred EEEEEccChhhHHHHHHHHHHHHHHHHHHc
Q 020439 290 GGTFRAFSKESIIQLKQRIEEVHLLIVANS 319 (326)
Q Consensus 290 ~~diR~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (326)
.+++|++|.++.+++++.|++.+++.++++
T Consensus 82 ~~~~R~~p~~~~~~i~~~i~~~~~~~~~~~ 111 (111)
T PF07687_consen 82 TVDIRYPPGEDLEEIKAEIEAAVEKIAKKY 111 (111)
T ss_dssp EEEEEESTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHhhhCC
Confidence 999999999999999999999999998764
No 66
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.75 E-value=9.6e-17 Score=146.11 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=99.7
Q ss_pred HHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeec-----------c--------cCceEEEEECCCCCcEEEEEe
Q 020439 52 MVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFP-----------V--------AVTGVVGYIGTGQPPFVALRA 112 (326)
Q Consensus 52 ~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~-----------~--------~~~nvia~~~~~~~~~I~l~~ 112 (326)
+..+...+-..++-|..|.++++||.++|+++|++++.. . ...|+++++++...+.|++.|
T Consensus 37 ~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~~~~Ill~A 116 (346)
T PRK10199 37 ARHIATFFPGRMTGSPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMA 116 (346)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCCCCeEEEEE
Confidence 333444455566777889999999999999999997531 1 125799999765458999999
Q ss_pred ecCcccCcCCCCCcccCccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHc
Q 020439 113 DMDALAMEESVEWEHKSKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDA 185 (326)
Q Consensus 113 H~DtVp~~~~~~w~~~~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~ 185 (326)
|+|||++.....|.+. .+| ++++|+ |+|+|++|+++++|++. +++.+|.|+++++|| |..|+++++++
T Consensus 117 H~DTV~p~~~~~~~~~--~~g-~~~~GA~DnasGvA~lLe~ar~l~~~--~~~~~I~fv~~~~EE~Gl~GS~~~~~~ 188 (346)
T PRK10199 117 HLDTYAPQSDADVDAN--LGG-LTLQGMDDNAAGLGVMLELAERLKNV--PTEYGIRFVATSGEEEGKLGAENLLKR 188 (346)
T ss_pred EcCcCCCCCCCccccC--CCC-cccCCccccHHHHHHHHHHHHHHhhC--CCCCcEEEEEECCcccCcHHHHHHHHh
Confidence 9999975443344332 123 788997 69999999999999865 467899999999999 77999999986
No 67
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.71 E-value=1.2e-16 Score=148.92 Aligned_cols=257 Identities=16% Similarity=0.145 Sum_probs=193.7
Q ss_pred HHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCee-ec-------ccC--ce-EEEEECCCC--CcEEEEEeecCc
Q 020439 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYK-FP-------VAV--TG-VVGYIGTGQ--PPFVALRADMDA 116 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~-~~-------~~~--~n-via~~~~~~--~~~I~l~~H~Dt 116 (326)
+++++.+.++++||+.|++|.+++.++.+|++.+|+.++ .. ... .| +.+.+.+.- -|++.|.+|+||
T Consensus 5 ~~l~~~F~~~~kI~~~S~~e~~~~p~~~~~~k~~~~~v~dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~sh~Dt 84 (414)
T COG2195 5 ERLLDRFLELVKIPTQSKHEKAVAPSTVGQAKLLGLLVEDELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFISHHDT 84 (414)
T ss_pred HHHHHHHHHHeeCCCCCCCccccccccHHHHHHcCchhhhhhccccccccccCCCCeeeEEeeccccccccccccccccc
Confidence 788999999999999999999999999999999999983 21 111 12 455565542 278999999999
Q ss_pred ccCcC----CCCC----------------------cccC----------ccCCe-eecCCchHHHHHHHHHHHHHHhcc-
Q 020439 117 LAMEE----SVEW----------------------EHKS----------KVPGK-MHACGHDAHVAMLLGAAKMLQVFR- 158 (326)
Q Consensus 117 Vp~~~----~~~w----------------------~~~~----------~~~g~-l~GrG~k~~~a~~l~a~~~l~~~~- 158 (326)
+|... ...| -++. .-||. +-|-++|+|++.++.++..+++..
T Consensus 85 ~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~LLgaD~kAGia~i~~al~~~~~~~~ 164 (414)
T COG2195 85 VPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGATLLGADDKAGIAEIMTALSVLREKHP 164 (414)
T ss_pred cccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCccccCCcchhHHHHHHHHHHHHhhcCc
Confidence 96211 0112 0110 01232 345555899999999999998653
Q ss_pred CCCCceEEEEEecCCC-CcccHHHHHHccCCccccEEEEecccCCCCCcceeeccccccccceEEEEEEEecCCCcC-CC
Q 020439 159 HEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAA-IP 236 (326)
Q Consensus 159 ~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~~~~~~~~g~~~~~~g~~~~G~~~~~i~~~G~~~Hss-~p 236 (326)
.-++++|.+.|++||| ++.|+..+.-.. | ..++.+.+ + +.+.|.+.... .+...+++++.|+.+|++ .+
T Consensus 165 ~i~h~~i~~g~s~~Ee~g~rg~~~~~~a~-f-~a~~ay~i--D-Gg~~g~i~~ea----~~~~~~~~~~~g~~~h~~~a~ 235 (414)
T COG2195 165 EIPHGGIRGGFSPDEEIGGRGAANKDVAR-F-LADFAYTL--D-GGPVGEIPREA----FNAAAVRATIVGPNVHPGSAK 235 (414)
T ss_pred cccccCeEEEecchHHhhhhhhhhccHHh-h-hcceeEec--C-CCccCeeeeec----cchheeeeeeeccCcCccchH
Confidence 3578999999999999 668988874431 1 23444443 3 45677766542 467899999999999998 58
Q ss_pred CCCCcHHHHHHHHHHHHhHhhhcccCCCCCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHHHHH
Q 020439 237 QHTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIV 316 (326)
Q Consensus 237 ~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~ 316 (326)
...+||+..+.+++..+.... ....++.+.+..+++...|.|.+++.....+|.......+.....+++.+++.+
T Consensus 236 ~~~i~a~~~a~e~~~~~~~~~-----~~e~t~~~~Gv~~~~~~~~~V~~~s~~~~~iR~~d~~~~~s~~~~~~~~~~~~~ 310 (414)
T COG2195 236 GKMINALLLAAEFILELPLEE-----VPELTEGPEGVYHLGDSTNSVEETSLNLAIIRDFDNLLFRARKDSMKDVVEEMA 310 (414)
T ss_pred HHHhhHHHhhhhhhhcCCccc-----ccccccccceEEeccccccchhhhhhhhhhhhhcchhHHHHhHHHHHHHHHHHH
Confidence 889999998888888775421 113467788999999999999999999999999999999999999999999998
Q ss_pred HHcC
Q 020439 317 ANSN 320 (326)
Q Consensus 317 ~~~~ 320 (326)
++++
T Consensus 311 ~~~g 314 (414)
T COG2195 311 ASLG 314 (414)
T ss_pred HHhh
Confidence 8887
No 68
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.62 E-value=7.8e-15 Score=135.30 Aligned_cols=129 Identities=19% Similarity=0.245 Sum_probs=104.2
Q ss_pred HHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECC-CCCcEEEEEeecCcccC---------
Q 020439 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGT-GQPPFVALRADMDALAM--------- 119 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~-~~~~~I~l~~H~DtVp~--------- 119 (326)
+.+++++++|+++||+|++|.++++++.++|+++|++++.+ ..+|+++.+.+ .++|+|+|.+|||+|..
T Consensus 3 ~~~~~lLk~Lv~~~s~SG~E~~V~~~l~~~l~~~g~ev~~D-~~Gnlia~~~g~~~~~~v~l~aHmDevG~~V~~I~~~G 81 (343)
T TIGR03106 3 DYLTETLLALLAIPSPTGFTDAVVRYVAERLEDLGIEYELT-RRGAIRATLPGREATPARAVVTHLDTLGAMVRELKDNG 81 (343)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEC-CCeEEEEEECCCCCCCeEEEEEeeccccceeeEECCCC
Confidence 56889999999999999999999999999999999998865 68899998855 34589999999999910
Q ss_pred ----------------------------------c-C-------------CCCCc-------------------------
Q 020439 120 ----------------------------------E-E-------------SVEWE------------------------- 126 (326)
Q Consensus 120 ----------------------------------~-~-------------~~~w~------------------------- 126 (326)
+ . ...|.
T Consensus 82 ~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~iDiG~~s~ee~~~lGV~~Gd 161 (343)
T TIGR03106 82 RLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRVDARASCRADLVRLGISVGD 161 (343)
T ss_pred eEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEEECCcCCHHHHHHcCCCCCC
Confidence 0 0 01222
Q ss_pred ---cc----CccCCeeecCCc--hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCCcccH
Q 020439 127 ---HK----SKVPGKMHACGH--DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGA 179 (326)
Q Consensus 127 ---~~----~~~~g~l~GrG~--k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~ 179 (326)
+. ...+|++|||+. |+++++++++++.|++.+.+++.+|.++|+++||.+.|+
T Consensus 162 ~v~~~~~~~~~~~~~i~gr~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG~ga 223 (343)
T TIGR03106 162 FVAFDPQPEFLANGFIVSRHLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVGSGA 223 (343)
T ss_pred EEEECCccEEecCCEEEEEecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCccc
Confidence 00 013678999986 899999999999999877678899999999999944564
No 69
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.57 E-value=7.9e-15 Score=124.37 Aligned_cols=76 Identities=34% Similarity=0.602 Sum_probs=66.8
Q ss_pred EEEeecCcccCcCCCCCccc----CccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-Ccc-cH
Q 020439 109 ALRADMDALAMEESVEWEHK----SKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGG-GA 179 (326)
Q Consensus 109 ~l~~H~DtVp~~~~~~w~~~----~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~-G~ 179 (326)
+|++|||||| . .+.|+++ ..++|++||||+ |++++++++|++.|++.+.+++++|.|+|++||| ++. |+
T Consensus 1 ll~~H~Dtv~-~-~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~ 78 (189)
T PF01546_consen 1 LLYAHMDTVP-G-PEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGA 78 (189)
T ss_dssp EEEEES-BCS-T-GGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHH
T ss_pred CccccccccC-C-cCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchh
Confidence 6899999999 4 6789765 457899999997 8999999999999998888999999999999999 555 99
Q ss_pred HHHHHcc
Q 020439 180 KKMLDAG 186 (326)
Q Consensus 180 ~~l~~~g 186 (326)
+.+++++
T Consensus 79 ~~l~~~~ 85 (189)
T PF01546_consen 79 KHLLEEG 85 (189)
T ss_dssp HHHHHHC
T ss_pred hhhhhhc
Confidence 9999984
No 70
>PRK09961 exoaminopeptidase; Provisional
Probab=99.48 E-value=1.1e-12 Score=121.29 Aligned_cols=142 Identities=17% Similarity=0.227 Sum_probs=106.9
Q ss_pred HHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCCCCcEEEEEeecCcccC-------------
Q 020439 53 VNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAM------------- 119 (326)
Q Consensus 53 i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~I~l~~H~DtVp~------------- 119 (326)
+++|++|+++||+|++|.++++++.++|+++|++++.+ +.+|+++++++.++|+|+|.+|||+|+.
T Consensus 3 ~~~L~~L~~~~s~sG~E~~v~~~i~~~l~~~~~~v~~D-~~Gnvi~~~~g~~~~~v~l~aHmDevg~~V~~I~~~G~l~~ 81 (344)
T PRK09961 3 LSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFD-GLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDV 81 (344)
T ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhhCCEEEEC-CCCCEEEEEcCCCCCEEEEEeccceeceEEEEECCCceEEE
Confidence 36799999999999999999999999999999998754 6889999885544579999999999921
Q ss_pred ---cCC------------------------------CCCcc-------cC-----------------------ccCCeee
Q 020439 120 ---EES------------------------------VEWEH-------KS-----------------------KVPGKMH 136 (326)
Q Consensus 120 ---~~~------------------------------~~w~~-------~~-----------------------~~~g~l~ 136 (326)
|.. ..|.. .+ ..++++.
T Consensus 82 ~~vGG~~~~~~~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~iDiG~~s~ee~~~~GI~~Gd~v~~~~~~~~~~~~~i~ 161 (344)
T PRK09961 82 LPVGNVRMAARQLQPVRITTREECKIPGLLNGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVM 161 (344)
T ss_pred EeCCCccccccCCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEEEcCCCCHHHHHhcCCCCCCEEEEcceeEEecCCEEE
Confidence 110 01110 00 0123444
Q ss_pred cCCc--hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccccEEEEeccc
Q 020439 137 ACGH--DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLHVS 200 (326)
Q Consensus 137 GrG~--k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~~~ 200 (326)
|+.- +.++++++.+++.+++. +++.+|+++|++.|| |..|++..... + ++|.+|+.+..
T Consensus 162 gkalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~--i-~pd~~I~vDv~ 223 (344)
T PRK09961 162 GKAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRA--V-SPDVAIVLDTA 223 (344)
T ss_pred EeechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhc--c-CCCEEEEEecc
Confidence 5554 58999999999999754 478999999999999 77899877553 2 46777776643
No 71
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.45 E-value=1.9e-12 Score=118.41 Aligned_cols=145 Identities=22% Similarity=0.236 Sum_probs=108.9
Q ss_pred HHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCCCC-cEEEEEeecCcc-----------
Q 020439 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQP-PFVALRADMDAL----------- 117 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~-~~I~l~~H~DtV----------- 117 (326)
+++.++|++|+.+|++||.|.++.+++.++|++++.+++.+ ..+|+++++++.++ +.|++.+|||+|
T Consensus 2 ~~~~~~LkeL~~~~gpsG~E~eVr~~~~~el~~~~~ev~~D-~lGnlia~~~g~~g~~~imi~AHmDEiG~mV~~I~~~G 80 (355)
T COG1363 2 EELLELLKELLEAPGPSGYEEEVRDVLKEELEPLGDEVEVD-RLGNLIAKKGGKNGPPKVMIAAHMDEIGFMVKEIEDDG 80 (355)
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHhCCceEEc-CCCcEEEEecCCCCCccEEEEeecceeeeeEEEECCCc
Confidence 57889999999999999999999999999999999998855 57899999987433 669999999998
Q ss_pred -----cCcC---------------------------------------CCCCccc---------C---------------
Q 020439 118 -----AMEE---------------------------------------SVEWEHK---------S--------------- 129 (326)
Q Consensus 118 -----p~~~---------------------------------------~~~w~~~---------~--------------- 129 (326)
|.|. ...|++. +
T Consensus 81 ~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v 160 (355)
T COG1363 81 FLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFV 160 (355)
T ss_pred eEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCccccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEE
Confidence 1110 0001100 0
Q ss_pred --------ccCCeeecCCc--hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccccEEEEec
Q 020439 130 --------KVPGKMHACGH--DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLH 198 (326)
Q Consensus 130 --------~~~g~l~GrG~--k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~ 198 (326)
..++++-++.- +.|+++++++++.| + +.+++.+++++|++.|| |..|++....+ -++|.+|.+.
T Consensus 161 ~~~~~~~~l~~~~i~skalDdR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVGlrGA~~~a~~---i~pd~aiavd 235 (355)
T COG1363 161 VFDPRFRELANGRVVSKALDDRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVGLRGAKTSAFR---IKPDIAIAVD 235 (355)
T ss_pred EEcCceEEecCCcEEeeeccchHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhccchhhccccc---cCCCEEEEEe
Confidence 01133333332 69999999999999 4 66899999999999999 77888877543 1467777665
Q ss_pred cc
Q 020439 199 VS 200 (326)
Q Consensus 199 ~~ 200 (326)
..
T Consensus 236 ~~ 237 (355)
T COG1363 236 VT 237 (355)
T ss_pred cc
Confidence 43
No 72
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=99.42 E-value=4.2e-12 Score=117.24 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=105.3
Q ss_pred HHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECC--CCCcEEEEEeecCccc-------------
Q 020439 54 NIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGT--GQPPFVALRADMDALA------------- 118 (326)
Q Consensus 54 ~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~--~~~~~I~l~~H~DtVp------------- 118 (326)
++|++|+++|++||+|.++++++.++|++++.+++.+ ..+|+++.+++ ..+|+|+|.+|||+|+
T Consensus 2 ~~L~~L~~~~gpSG~E~~v~~~i~~~l~~~~~~v~~D-~~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~~G~l~ 80 (350)
T TIGR03107 2 NKIKEVTELQGTSGFEHPIRDYLRQDITPLVDQVETD-GLGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKPDGTFR 80 (350)
T ss_pred hHHHHHHhCCCCCCCcHHHHHHHHHHHHhhCCEEEEC-CCCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECCCceEE
Confidence 5689999999999999999999999999999988755 56899998865 3358999999999991
Q ss_pred ---CcC------------------------------------C---CCCccc---------C------------------
Q 020439 119 ---MEE------------------------------------S---VEWEHK---------S------------------ 129 (326)
Q Consensus 119 ---~~~------------------------------------~---~~w~~~---------~------------------ 129 (326)
.|. . ..+++. +
T Consensus 81 ~~~vGG~~~~~l~gq~V~i~t~~g~~i~GViG~~~~Hl~~~~~~~~~~~~~~~l~IDiGa~skee~~~~GI~vGd~v~~~ 160 (350)
T TIGR03107 81 VVELGGWNPLVVSSQRFTLFTRKGKKYPVISGSVPPHLLRGSSGGPQLPAVSDILFDGGFTNKDEAWSFGVRPGDVIVPQ 160 (350)
T ss_pred EEeCCCccccccCCcEEEEEeCCCCEEEEEEeCCcccccChhhcccccCChhhEEEEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 000 0 001100 0
Q ss_pred -----c-cCCeeecCCc--hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccccEEEEeccc
Q 020439 130 -----K-VPGKMHACGH--DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLHVS 200 (326)
Q Consensus 130 -----~-~~g~l~GrG~--k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~~~ 200 (326)
. .++++.|+.- +.|+++++.+++.+++. +++.+++++|++.|| |..||+..... . ++|.+|+++..
T Consensus 161 ~~~~~~~~~~~i~~kalDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~--i-~pD~aI~vDv~ 235 (350)
T TIGR03107 161 TETILTANGKNVISKAWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTK--F-NPDIFFAVDCS 235 (350)
T ss_pred CCeEEEcCCCEEEEeccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhh--C-CCCEEEEEecC
Confidence 0 1133445553 58999999999999765 578899999999999 77999976543 2 56788876654
No 73
>PRK09864 putative peptidase; Provisional
Probab=99.38 E-value=1.2e-11 Score=114.03 Aligned_cols=139 Identities=17% Similarity=0.189 Sum_probs=103.0
Q ss_pred HHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecccCceEEEEECCCCCcEEEEEeecCcc---------------
Q 020439 53 VNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDAL--------------- 117 (326)
Q Consensus 53 i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~I~l~~H~DtV--------------- 117 (326)
++++++|+++|++||.|.++++++.++|+.++.+++.+ ..+|+++..+ .++++|+|.+|||+|
T Consensus 3 ~~~L~~L~~~~g~SG~E~~v~~~l~~~l~~~~dev~~D-~~GNli~~~g-~~~~kvml~AHmDevG~mV~~I~~~G~l~~ 80 (356)
T PRK09864 3 IELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITFD-GLGSFVARKG-NKGPKVAVVGHMDEVGFMVTHIDESGFLRF 80 (356)
T ss_pred HHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCEEEEC-CCCCEEEEeC-CCCcEEEEEecccccCEEEEEECCCCeEEE
Confidence 45799999999999999999999999999999998755 5789999873 334799999999999
Q ss_pred -cCcCC----------------------------------------CCCc--c-----cC--------------------
Q 020439 118 -AMEES----------------------------------------VEWE--H-----KS-------------------- 129 (326)
Q Consensus 118 -p~~~~----------------------------------------~~w~--~-----~~-------------------- 129 (326)
|.|.. ..|. | .+
T Consensus 81 ~~lGG~~~~~l~~q~V~i~t~~g~~v~GVig~~~~H~~~~~~~~k~~~~~~l~IDiGa~s~ee~~~~GV~vGD~v~~~~~ 160 (356)
T PRK09864 81 TTIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREEVEKRGVEIGDFISPEAN 160 (356)
T ss_pred EeCCCcCccccCCCEEEEEeCCCCEEEEEEeCCccccCChhHcccCCChhHEEEEeCCCCHHHHHhcCCCCCCEEEECCC
Confidence 11100 0010 0 00
Q ss_pred ---ccCCeeecCCc--hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccccEEEEeccc
Q 020439 130 ---KVPGKMHACGH--DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLHVS 200 (326)
Q Consensus 130 ---~~~g~l~GrG~--k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~~~ 200 (326)
..++++.|+.- +.|+++++.+++.+++ ++.+++++|++.|| |.+||+..... . ++|.+|+++..
T Consensus 161 ~~~l~~~~i~~kalDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~--i-~PDiaIavDvt 230 (356)
T PRK09864 161 FACWGEDKVVGKALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEH--I-KPDVVIVLDTA 230 (356)
T ss_pred cEEEcCCEEEEEeCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhc--C-CCCEEEEEecc
Confidence 01233444443 5899999999999864 77999999999999 77899987553 2 46777776643
No 74
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.64 E-value=1.4e-07 Score=93.90 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhhhC-CCCCc---chHHHHHHHHHHHhhcCCC-------eeec-----------------ccCceEEEEE
Q 020439 49 FYWMVNIRRKIHEN-PELGF---QEFETSKLIRAELDQMGIP-------YKFP-----------------VAVTGVVGYI 100 (326)
Q Consensus 49 ~~~~i~~l~~l~~i-ps~s~---~e~~~~~~l~~~l~~~G~~-------~~~~-----------------~~~~nvia~~ 100 (326)
.++.+..++++.++ |.+.+ +|..+.+++.+++++..=. .+.+ .+-.|++.++
T Consensus 56 ~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvVki 135 (834)
T KOG2194|consen 56 EARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVVKI 135 (834)
T ss_pred HHHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEEec
Confidence 37778888888877 65554 4567888888888776321 1110 1245889988
Q ss_pred CCC--CC-cEEEEEeecCcccCcCCCCCcccCccCCeeecCCch-HHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-C
Q 020439 101 GTG--QP-PFVALRADMDALAMEESVEWEHKSKVPGKMHACGHD-AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-G 175 (326)
Q Consensus 101 ~~~--~~-~~I~l~~H~DtVp~~~~~~w~~~~~~~g~l~GrG~k-~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~ 175 (326)
.++ .. -.|++++|+|+||.+. |-|.+ .++|+||++++.+.+....+..+|+|+|...|| +
T Consensus 136 ~~k~~~~~~~lLlnaHfDSvpt~~---------------gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~ 200 (834)
T KOG2194|consen 136 SPKNGNDKNALLLNAHFDSVPTGP---------------GATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESG 200 (834)
T ss_pred CCCCCCccceeeeeccccccCCCC---------------CCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccch
Confidence 554 22 4899999999999653 33443 588999999999998877789999999999999 6
Q ss_pred cccHHHHHHcc-CCccccEEEEe
Q 020439 176 GGGAKKMLDAG-ALENVEAIFGL 197 (326)
Q Consensus 176 ~~G~~~l~~~g-~~~~~d~~i~~ 197 (326)
..|+..++.+. +...+.+++-+
T Consensus 201 L~gsH~FItQH~w~~~~ka~INL 223 (834)
T KOG2194|consen 201 LLGSHAFITQHPWSKNIKAVINL 223 (834)
T ss_pred hhhcccceecChhhhhhheEEec
Confidence 68999888743 33445566643
No 75
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=98.36 E-value=1.1e-06 Score=73.82 Aligned_cols=68 Identities=28% Similarity=0.443 Sum_probs=53.2
Q ss_pred EEEEEeecCcccCcCCCCCcccCccCCeeecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHH
Q 020439 107 FVALRADMDALAMEESVEWEHKSKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKM 182 (326)
Q Consensus 107 ~I~l~~H~DtVp~~~~~~w~~~~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l 182 (326)
.|++.+|+|+++ .. |+ + -++.|+ -.|++++|+.++.|.+.+.+++++|.|+|..+|| +..|++++
T Consensus 2 ~ivi~aH~Ds~~-~~---~~------~-~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~ 70 (179)
T PF04389_consen 2 YIVIGAHYDSVG-GD---AD------G-SWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAF 70 (179)
T ss_dssp EEEEEEE--BES-CC---C-------T-CSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHH
T ss_pred EEEEEeecCCCC-Cc---CC------C-cccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHH
Confidence 689999999998 21 11 2 356666 2799999999999999776788999999999999 78999999
Q ss_pred HHc
Q 020439 183 LDA 185 (326)
Q Consensus 183 ~~~ 185 (326)
+++
T Consensus 71 ~~~ 73 (179)
T PF04389_consen 71 VEH 73 (179)
T ss_dssp HHH
T ss_pred HHh
Confidence 973
No 76
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=98.28 E-value=4.4e-06 Score=75.65 Aligned_cols=63 Identities=25% Similarity=0.295 Sum_probs=48.6
Q ss_pred CCeeecCCc--hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccCCccccEEEEecc
Q 020439 132 PGKMHACGH--DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEAIFGLHV 199 (326)
Q Consensus 132 ~g~l~GrG~--k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~~~~~d~~i~~~~ 199 (326)
++++.|+.. +.|+++++.+++.|++. .++.+|+++|++.|| |..|++....+ . ++|.+|+++.
T Consensus 125 ~~~i~gkalDdR~g~~~lle~l~~l~~~--~~~~~v~~v~tvqEEvG~rGA~~aa~~--i-~PD~ai~vD~ 190 (292)
T PF05343_consen 125 NGRIVGKALDDRAGCAVLLELLRELKEK--ELDVDVYFVFTVQEEVGLRGAKTAAFR--I-KPDIAIAVDV 190 (292)
T ss_dssp TTEEEETTHHHHHHHHHHHHHHHHHTTS--S-SSEEEEEEESSCTTTSHHHHHHHHH--H--CSEEEEEEE
T ss_pred CCEEEEEeCCchhHHHHHHHHHHHHhhc--CCCceEEEEEEeeeeecCcceeecccc--c-CCCEEEEEee
Confidence 455777776 48999999999999875 456999999999999 77899987664 1 4677776654
No 77
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00034 Score=61.36 Aligned_cols=172 Identities=18% Similarity=0.126 Sum_probs=105.3
Q ss_pred CchhhHHHHHHHHHHhhCCccccCCCCChhhcccccHHHHHhhcC--chhHHHHHHHHHHhhhCCCCC--cchHHHHHHH
Q 020439 1 MGSSKLLSLLVTLYLLAPTSISSDVSLSPEELTQIPVKFLDFAKK--PEIFYWMVNIRRKIHENPELG--FQEFETSKLI 76 (326)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~l~~ips~s--~~e~~~~~~l 76 (326)
|.++.++.+++.|.-.+...+..-..+....-..+.+..++.+.+ .+ .++.+.++-+. +|.+. .+-+++.+||
T Consensus 2 ~~~~~ll~L~~~la~gs~~~~~~~~~~~~~~p~~l~~~~lr~i~~~s~~--~~~~~~L~p~l-v~Rvpgs~g~~~vr~~i 78 (338)
T KOG3946|consen 2 MGMLVLLPLLATLAWGSVLFQVHRVGWWLELPSELAESRLRAINPDSDW--NRLWENLLPIL-VPRVPGSPGSRQVRRFI 78 (338)
T ss_pred cchhHHHHHHHHHHHhhheeeeeeecccccCcccccHHHHHHhcCCCCH--HHHHHhhhhhh-ccccCCCCccHHHHHHH
Confidence 456666666554444443444333333211112233333333332 22 45555544432 44443 3558999999
Q ss_pred HHHHhhcCCCeeec---c-------cCceEEEEECCCCCcEEEEEeecCcccCcCCCCCcccCccCCeeecCCchHHHHH
Q 020439 77 RAELDQMGIPYKFP---V-------AVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAM 146 (326)
Q Consensus 77 ~~~l~~~G~~~~~~---~-------~~~nvia~~~~~~~~~I~l~~H~DtVp~~~~~~w~~~~~~~g~l~GrG~k~~~a~ 146 (326)
.+.|+.+|+.++.+ + .-.|+++.+.......+++.+|||+--... |. .+-+-|+..+.|+
T Consensus 79 ~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~~A~r~lVlachydsk~~p~---~~-------~vgatdsAvpcam 148 (338)
T KOG3946|consen 79 IQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDPNASRYLVLACHYDSKIFPG---GM-------FVGATDSAVPCAM 148 (338)
T ss_pred HHHHHhcCceeeeccccccCcceeeeeeeEEEecCCCcchheeeecccccccCCC---cc-------eEeeccccccHHH
Confidence 99999999998863 1 134789998765447899999999964321 11 1223444578999
Q ss_pred HHHHHHHHHhc----cCCCCceEEEEEecCCCC---------cccHHHHHHc
Q 020439 147 LLGAAKMLQVF----RHEIKGTIVLVFQPAEEG---------GGGAKKMLDA 185 (326)
Q Consensus 147 ~l~a~~~l~~~----~~~~~~~i~~~~~~dEE~---------~~G~~~l~~~ 185 (326)
++..+++|.+. .....-.+.++|--+||. ..|++++.++
T Consensus 149 ll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~~ 200 (338)
T KOG3946|consen 149 LLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAAK 200 (338)
T ss_pred HHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHHH
Confidence 99999887642 123456789999999982 2799999875
No 78
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=97.03 E-value=0.01 Score=55.25 Aligned_cols=115 Identities=19% Similarity=0.285 Sum_probs=78.2
Q ss_pred HHHHHHHhhcCCCeeec---------ccCceEEEEECCC--------CCcEEEEEeecCcccCcCCCCCcccCccCCeee
Q 020439 74 KLIRAELDQMGIPYKFP---------VAVTGVVGYIGTG--------QPPFVALRADMDALAMEESVEWEHKSKVPGKMH 136 (326)
Q Consensus 74 ~~l~~~l~~~G~~~~~~---------~~~~nvia~~~~~--------~~~~I~l~~H~DtVp~~~~~~w~~~~~~~g~l~ 136 (326)
+.+..-....|+..... ..-.|+.|++.++ ..|+|++.+||||..+.+ +.--
T Consensus 165 ~~ll~Tasangy~iv~sg~sp~a~~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap-----------~lsv 233 (555)
T KOG2526|consen 165 QHLLQTASANGYSIVSSGQSPEAPPSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAP-----------GLSV 233 (555)
T ss_pred HHHHhhhccCcEEEEecCCCcccCCCCccceEEeecccccccccccccCCeEEEEEeccccccCC-----------CCCC
Confidence 45566666677765541 1235899988521 239999999999987643 1112
Q ss_pred cCCch-HHHHHHHHHHHHHHhc----cCCCCceEEEEEecCCC-CcccHHHHHHcc---CCccccEEEEecc
Q 020439 137 ACGHD-AHVAMLLGAAKMLQVF----RHEIKGTIVLVFQPAEE-GGGGAKKMLDAG---ALENVEAIFGLHV 199 (326)
Q Consensus 137 GrG~k-~~~a~~l~a~~~l~~~----~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g---~~~~~d~~i~~~~ 199 (326)
|.+++ +|+.++|+.++.+.+. .-..+.++.|+.+.+-- ...|++++++-. +-+.+|+++|++.
T Consensus 234 gADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdt 305 (555)
T KOG2526|consen 234 GADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDT 305 (555)
T ss_pred CCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCccccccchhhhhhcchHHHHhcccEEEEhhh
Confidence 33343 5788899999887653 12458899999998877 668999998731 2236888888653
No 79
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=96.63 E-value=0.006 Score=58.62 Aligned_cols=44 Identities=32% Similarity=0.243 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHHHHHHccC
Q 020439 142 AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGA 187 (326)
Q Consensus 142 ~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~l~~~g~ 187 (326)
.|++++|++++.|+... ++.+|.|++...|| |..|+++++.+-.
T Consensus 231 sGva~llEiAr~l~~~~--p~~~v~f~~~~aEE~Gl~GS~~~~~~~~ 275 (435)
T COG2234 231 SGVAALLELARVLKGNP--PKRTVRFVAFGAEESGLLGSEAYVKRLS 275 (435)
T ss_pred HHHHHHHHHHHHHhcCC--CCceEEEEEecchhhcccccHHHHhcCC
Confidence 79999999999998764 88999999999999 8899999988744
No 80
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=95.78 E-value=0.032 Score=56.26 Aligned_cols=77 Identities=22% Similarity=0.275 Sum_probs=57.4
Q ss_pred CceEEEEECCC--CCcEEEEEeecCcccCcCCCCCcccCccCCeeecCCchHHHHHHHHHHHHH---HhccCCCCceEEE
Q 020439 93 VTGVVGYIGTG--QPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKML---QVFRHEIKGTIVL 167 (326)
Q Consensus 93 ~~nvia~~~~~--~~~~I~l~~H~DtVp~~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a~~~l---~~~~~~~~~~i~~ 167 (326)
-.|+++.+.|. ++.-|++.+|.|..-.|. .. ...|.+.++...+.+ ++.+.+|.++|+|
T Consensus 338 i~NIig~I~Gs~epD~~ViigahrDSw~~Ga--------~d--------p~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F 401 (702)
T KOG2195|consen 338 IQNIIGKIEGSEEPDRYVIIGAHRDSWTFGA--------ID--------PNSGTALLLEIARALSKLKKRGWRPRRTILF 401 (702)
T ss_pred eeeEEEEEecCcCCCeEEEEeccccccccCC--------cC--------CCccHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 35899999663 557899999999765331 11 124566666666554 4578999999999
Q ss_pred EEecCCC-CcccHHHHHHc
Q 020439 168 VFQPAEE-GGGGAKKMLDA 185 (326)
Q Consensus 168 ~~~~dEE-~~~G~~~l~~~ 185 (326)
+...+|| |..|+-.+++.
T Consensus 402 ~sWdAeEfGliGStE~~E~ 420 (702)
T KOG2195|consen 402 ASWDAEEFGLLGSTEWAEE 420 (702)
T ss_pred EEccchhccccccHHHHHH
Confidence 9999999 77999999885
No 81
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=94.86 E-value=0.12 Score=45.24 Aligned_cols=66 Identities=20% Similarity=0.319 Sum_probs=51.6
Q ss_pred cEEEEEeecCcccCcCCCCCcccCccCCeeecCCc---hHHHHHHHHHHHHHHhc---cCCCCceEEEEEecCCC-Cccc
Q 020439 106 PFVALRADMDALAMEESVEWEHKSKVPGKMHACGH---DAHVAMLLGAAKMLQVF---RHEIKGTIVLVFQPAEE-GGGG 178 (326)
Q Consensus 106 ~~I~l~~H~DtVp~~~~~~w~~~~~~~g~l~GrG~---k~~~a~~l~a~~~l~~~---~~~~~~~i~~~~~~dEE-~~~G 178 (326)
|.|+..+.||+.-.-. +. +.|+ -.|++++|+++++|.+. ...++++|.|+|..+|- +..|
T Consensus 1 ~iIlv~armDs~s~F~-----------~~--s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiG 67 (234)
T PF05450_consen 1 PIILVVARMDSFSFFH-----------DL--SPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIG 67 (234)
T ss_pred CEEEEEecccchhccc-----------CC--CCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccc
Confidence 5789999999885321 22 3454 37999999999999865 23578999999999999 7789
Q ss_pred HHHHHH
Q 020439 179 AKKMLD 184 (326)
Q Consensus 179 ~~~l~~ 184 (326)
++.++.
T Consensus 68 S~R~vy 73 (234)
T PF05450_consen 68 SSRFVY 73 (234)
T ss_pred hHHHHH
Confidence 998865
No 82
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=94.45 E-value=0.72 Score=44.77 Aligned_cols=131 Identities=14% Similarity=0.114 Sum_probs=82.9
Q ss_pred HHhhcCchhHHHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeec-------ccCceEEEEECCC-CCcEEEEE
Q 020439 40 LDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFP-------VAVTGVVGYIGTG-QPPFVALR 111 (326)
Q Consensus 40 ~~~~~~~~~~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~-------~~~~nvia~~~~~-~~~~I~l~ 111 (326)
.+.++.-.+..+-+.+.|+|++.|+---.-...++++.+.+++.|++++.. .+.+.+++.=.++ .+|+++..
T Consensus 161 ~~~~~~~~~~a~~~~~aRdL~n~P~n~~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~prli~l 240 (483)
T PRK00913 161 EKAIAHGEAIAEGVNLARDLVNEPPNILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSANPPRLIVL 240 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCChhhcCHHHHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCCCCCeEEEE
Confidence 334444445578899999999999855566789999999999999998762 2234455553333 34666665
Q ss_pred eecC----cccCcCCCCCcccC----ccCC-eeec-CCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q 020439 112 ADMD----ALAMEESVEWEHKS----KVPG-KMHA-CGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE 174 (326)
Q Consensus 112 ~H~D----tVp~~~~~~w~~~~----~~~g-~l~G-rG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 174 (326)
-+.- .+-+|. +-+|++ .+.+ .+.+ ++..+|.|+.+++++++.+. +++.+|..++..-|-
T Consensus 241 ~Y~g~~~~i~LVGK--GITFDsGG~slKp~~~M~~MK~DM~GAAaVlga~~aia~l--kl~vnV~~v~~l~EN 309 (483)
T PRK00913 241 EYKGGKKPIALVGK--GLTFDSGGISLKPAAGMDEMKYDMGGAAAVLGTMRALAEL--KLPVNVVGVVAACEN 309 (483)
T ss_pred EECCCCCeEEEEcC--ceEecCCCccCCCCcChhhcccccHhHHHHHHHHHHHHHc--CCCceEEEEEEeecc
Confidence 5541 111111 223331 1111 1111 11149999999999999886 478899988888877
No 83
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=93.86 E-value=1.8 Score=42.09 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=82.4
Q ss_pred hhcCchhHHHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeec-------ccCceEEEEECCC-CCcEEEEEee
Q 020439 42 FAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFP-------VAVTGVVGYIGTG-QPPFVALRAD 113 (326)
Q Consensus 42 ~~~~~~~~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~-------~~~~nvia~~~~~-~~~~I~l~~H 113 (326)
.++.-....+-+.+.|+|++-|+---.-...++++.+.+++.|++++.. .+.+.+++.=.++ .+|.++..-+
T Consensus 146 ~~~~~~~~a~~~~~aRdL~n~P~n~~tP~~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~p~lv~l~Y 225 (468)
T cd00433 146 ALERGEAIAEGVNLARDLVNTPANDLTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEEPPRLIVLEY 225 (468)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCCCCEEEEEEE
Confidence 3333334578899999999999855566889999999999999998862 2334455553333 4467766666
Q ss_pred cCcccCcCC-----CCCcccCccCCe-e-ecCC---c---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q 020439 114 MDALAMEES-----VEWEHKSKVPGK-M-HACG---H---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE 174 (326)
Q Consensus 114 ~DtVp~~~~-----~~w~~~~~~~g~-l-~GrG---~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 174 (326)
...-+.... .+-+|++ +|. | -+.+ | ++|.|+.+++++++.+.+ ++.+|..++..-|-
T Consensus 226 ~g~~~~~~~i~LVGKGiTFDs--GG~slKp~~~M~~Mk~DM~GAAaVlga~~aia~l~--~~vnV~~i~~~~EN 295 (468)
T cd00433 226 KGKGASKKPIALVGKGITFDT--GGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELK--LPVNVVGVLPLAEN 295 (468)
T ss_pred CCCCCCCCcEEEEcCceEecC--CCccccCccChhhccccchhHHHHHHHHHHHHHcC--CCceEEEEEEeeec
Confidence 533210000 0112221 111 1 1222 2 399999999999999874 68888888887777
No 84
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=92.97 E-value=0.26 Score=48.06 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=38.9
Q ss_pred CCceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHH
Q 020439 265 DSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHL 313 (326)
Q Consensus 265 ~~~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 313 (326)
...|+|++.++++ |++|.+++|+|++|+++++++.+.+++.++
T Consensus 336 ~~~t~n~g~i~~~------~~~~~~~i~~R~~~~~~~~~i~~~i~~~~~ 378 (477)
T TIGR01893 336 VESSLNLGVVKTK------ENKVIFTFLIRSSVESDKDYVTEKIESIAK 378 (477)
T ss_pred EEeeeeEEEEEEc------CCEEEEEEEeCCCCchhHHHHHHHHHHHhh
Confidence 3568999999876 689999999999999999999999999887
No 85
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=91.64 E-value=2.6 Score=38.50 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=68.9
Q ss_pred HHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecc--------------------cCce-EEEEECC-C--CCcEE
Q 020439 53 VNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPV--------------------AVTG-VVGYIGT-G--QPPFV 108 (326)
Q Consensus 53 i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~--------------------~~~n-via~~~~-~--~~~~I 108 (326)
+.+.|+|++-|+---.-...++++.+.+++.|++++..+ ..+. ++.++.+ + ..++|
T Consensus 1 vn~aRdL~n~P~n~~~P~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~~i 80 (311)
T PF00883_consen 1 VNLARDLVNTPPNILTPETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKKPI 80 (311)
T ss_dssp HHHHHHHHHS-TTTSSHHHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSEEE
T ss_pred ChHHHhhhCCChhhcCHHHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCccE
Confidence 467889999998666678999999999999999887621 1122 3334432 2 23566
Q ss_pred EEEeecCcccCcCCCCCcccCcc-CCeeec-CCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q 020439 109 ALRADMDALAMEESVEWEHKSKV-PGKMHA-CGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE 174 (326)
Q Consensus 109 ~l~~H~DtVp~~~~~~w~~~~~~-~g~l~G-rG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 174 (326)
+|.|-==|...|.. ..+ .+.+.+ +..++|.|+.+++++++.+. +++.+|..++..-|-
T Consensus 81 ~LVGKGiTFDtGG~------~lKp~~~M~~Mk~DM~GAAaV~ga~~aia~l--k~~vnV~~~l~~~EN 140 (311)
T PF00883_consen 81 ALVGKGITFDTGGL------SLKPSGGMEGMKYDMGGAAAVLGAMRAIAKL--KLPVNVVAVLPLAEN 140 (311)
T ss_dssp EEEEEEEEEEE-TT------SSSCSTTGGGGGGGGHHHHHHHHHHHHHHHC--T-SSEEEEEEEEEEE
T ss_pred EEEcceEEEecCCc------cCCCCcchhhcccCcchHHHHHHHHHHHHHc--CCCceEEEEEEcccc
Confidence 66654211111110 011 111221 22259999999999999986 466888888877765
No 86
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=90.28 E-value=6.9 Score=38.51 Aligned_cols=126 Identities=13% Similarity=0.054 Sum_probs=78.2
Q ss_pred hcCchhHHHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCee-ec-------ccCceEEEEECCC-CCcEEEEEee
Q 020439 43 AKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYK-FP-------VAVTGVVGYIGTG-QPPFVALRAD 113 (326)
Q Consensus 43 ~~~~~~~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~-~~-------~~~~nvia~~~~~-~~~~I~l~~H 113 (326)
++.-.+..+-+.+.|+|++-|+---.-...++.+.+.+.+.|++++ .. .+.+.+++.=.++ .+|.++...|
T Consensus 205 ~~~g~~ia~~vn~ARdLvn~P~N~ltP~~~Ae~a~~~~~~~g~~v~~Vl~~~~l~~~gmg~llaVgkGS~~pPrli~L~Y 284 (569)
T PTZ00412 205 IAAGNIIGHCVNEARNLGNLREDEGVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSRHEPYLVVFEY 284 (569)
T ss_pred HHHHHHHHHHHHHHHHhccCChhhcCHHHHHHHHHHHHhhcCCEEEEEEcHHHHHHCCCcceeeeeccCCCCCEEEEEEe
Confidence 3333455788889999999998555557788888888888999986 41 2334455554343 3466555554
Q ss_pred cCcccCcCCCCCcccCccCCeee---------cCC---c---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q 020439 114 MDALAMEESVEWEHKSKVPGKMH---------ACG---H---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE 174 (326)
Q Consensus 114 ~DtVp~~~~~~w~~~~~~~g~l~---------GrG---~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 174 (326)
. |..+ ...+..-+-.|.-| +-+ | .+|.|+.+++++++.+. +++.+|..++...|-
T Consensus 285 ~---g~~~-~~~~iaLVGKGITFDSGGisLKP~~~M~~MK~DMgGAAaVlga~~AiA~L--klpvnVv~iiplaEN 354 (569)
T PTZ00412 285 I---GNPR-SSAATALVGKGVTFDCGGLNIKPYGSMETMHSDMMGAATVMCTLKAIAKL--QLPVNVVAAVGLAEN 354 (569)
T ss_pred C---CCCC-CCCcEEEEcCceEEcCCCCCCCCccChhhhhccchhHHHHHHHHHHHHHc--CCCeEEEEEEEhhhc
Confidence 3 2111 11111101112222 112 2 39999999999999876 477888888887777
No 87
>PRK05015 aminopeptidase B; Provisional
Probab=90.09 E-value=9.5 Score=36.29 Aligned_cols=119 Identities=12% Similarity=0.103 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhc---CCCeeec-------ccCceEEEEECCC-CCcEEEEEeecCccc
Q 020439 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQM---GIPYKFP-------VAVTGVVGYIGTG-QPPFVALRADMDALA 118 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~---G~~~~~~-------~~~~nvia~~~~~-~~~~I~l~~H~DtVp 118 (326)
-+.+.+.|+|++-|+---.-...++...++++++ +++++.. .+...+++.=.++ .+|.++..-| . |
T Consensus 100 ~~~~~~aRdLvn~P~n~ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmggilaVgrGS~~pP~lv~L~Y-~--~ 176 (424)
T PRK05015 100 LKIIDWVRDTINAPAEELGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVGRGSERPPVLLALDY-N--P 176 (424)
T ss_pred HHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCceeeeeccCCCCCEEEEEEe-c--C
Confidence 5678899999999985445567777777777776 5666652 2234455553333 3355443333 2 3
Q ss_pred CcCCCCCcc--cCccCCeee---------cCC---c---hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q 020439 119 MEESVEWEH--KSKVPGKMH---------ACG---H---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE 174 (326)
Q Consensus 119 ~~~~~~w~~--~~~~~g~l~---------GrG---~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 174 (326)
.++. +.+. --+-.|.-| +-| | .+|.|+.++++.++.+. .++.+|..++...|-
T Consensus 177 ~g~~-~~~v~~aLVGKGITFDSGG~sLKps~~M~~MK~DMgGAAaV~ga~~~a~~~--~l~~nV~~il~~aEN 246 (424)
T PRK05015 177 TGDP-DAPVYACLVGKGITFDSGGYSIKPSAGMDSMKSDMGGAATVTGALALAITR--GLNKRVKLFLCCAEN 246 (424)
T ss_pred CCCC-CCCeeEEEecCceEecCCCccCCCCcCHHHhhcchhHHHHHHHHHHHHHhc--CCCceEEEEEEeccc
Confidence 3221 1121 001112111 112 2 38999999999888776 478899999988887
No 88
>KOG2597 consensus Predicted aminopeptidase of the M17 family [General function prediction only]
Probab=89.38 E-value=4.4 Score=39.28 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=78.5
Q ss_pred HHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCeeec------ccCce-EEEEECC-CCCcEEEEEeecCcccCcC
Q 020439 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFP------VAVTG-VVGYIGT-GQPPFVALRADMDALAMEE 121 (326)
Q Consensus 50 ~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~------~~~~n-via~~~~-~~~~~I~l~~H~DtVp~~~ 121 (326)
.+-+.+.|+|...|.---.-...++++.+.+...|+.++.. ...-| +.+.-.+ ..+|.++...|.++=|...
T Consensus 189 ~~~~~lar~l~d~PaN~Mtp~~fae~a~~~~~~~~v~v~V~~~~~i~~~~~~~~l~V~k~s~~pP~ll~lsY~g~~~~~~ 268 (513)
T KOG2597|consen 189 AAAQNLARRLGDTPANRMTPTQFAEEAVDVLCPLGVTVEVRDEEWIEEQGMNSFLAVAKASCEPPRLLELSYKGTSGADK 268 (513)
T ss_pred HHHHHHHHHhccCChhhcCHHHHHHHHHHhhcccCceEEEechHHHhhccccceeeeccccCCCCEEEEEEEcCCCCCcc
Confidence 67778888888877643445788999999999999877652 12233 3333223 3457888888887765332
Q ss_pred CC-----CCcccC----ccC-Ceeec-CCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q 020439 122 SV-----EWEHKS----KVP-GKMHA-CGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE 174 (326)
Q Consensus 122 ~~-----~w~~~~----~~~-g~l~G-rG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 174 (326)
.- +-+|++ ++. +.+.+ |+.++|.|+.+++++++.+.+ ++-++.+++.--|-
T Consensus 269 ~i~lvGKGvtfDsGGl~iK~~~~M~~mr~dm~GAA~v~~~~~a~~~l~--~~in~~~v~plcEN 330 (513)
T KOG2597|consen 269 TILLVGKGVTFDSGGLSIKPKTGMDGMRRDMGGAAVVLGAFRAAAQLS--LPINVHAVLPLCEN 330 (513)
T ss_pred eEEEEecceEEecCccccccCCChhhhhhhccccHHHHHHHHHHHhcC--CCCceEEEEeeecc
Confidence 11 112221 111 11222 333589999999999998765 55888888887777
No 89
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=81.76 E-value=22 Score=34.61 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcC-CCeeec-------ccCceEEEEECCC-CCcEEEEE---eecC
Q 020439 48 IFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMG-IPYKFP-------VAVTGVVGYIGTG-QPPFVALR---ADMD 115 (326)
Q Consensus 48 ~~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G-~~~~~~-------~~~~nvia~~~~~-~~~~I~l~---~H~D 115 (326)
..-+.+.+.|+|++.|+---.-...++. ++.|.+.+ ++++.. .+.+.+++.=.++ ..|+++.. ++=+
T Consensus 165 ai~~~v~~aRdLvN~P~n~l~P~~la~~-a~~la~~~~v~veVl~~~~l~~~gmg~llaVg~GS~~~Prlivl~y~g~~~ 243 (485)
T COG0260 165 AIAEGVNLARDLVNTPANILTPEELAER-AELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSARPPRLIVLEYNGKGK 243 (485)
T ss_pred HHHHHHHHHHHHhhCCcccCCHHHHHHH-HHHHhhcCCceEEEecHHHHHHcCCceeeeeccCCCCCCeEEEEEcCCCCC
Confidence 3467889999999999865556777777 77777766 777652 2233455543332 23544332 2211
Q ss_pred -cccC---cCCCCCcccCccCCe-e-ecCC---ch---HHHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q 020439 116 -ALAM---EESVEWEHKSKVPGK-M-HACG---HD---AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE 174 (326)
Q Consensus 116 -tVp~---~~~~~w~~~~~~~g~-l-~GrG---~k---~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 174 (326)
-.|. |. +-+|++ +|. | -+-| || ||.|+.++++.++.+. +++.+|..+...-|-
T Consensus 244 ~~~~iaLVGK--GitFDs--GGisiKp~~~M~~MK~DMgGAAaV~g~~~a~a~l--~l~vnv~~vl~~~EN 308 (485)
T COG0260 244 AKKPIALVGK--GITFDS--GGISIKPAAGMDTMKYDMGGAAAVLGAMRALAEL--KLPVNVVGVLPAVEN 308 (485)
T ss_pred CCceEEEEcC--ceeecC--CCcccCCccchhhhhcccchHHHHHHHHHHHHHc--CCCceEEEEEeeecc
Confidence 1110 11 222331 111 0 1222 33 8999999999999887 477888888887777
No 90
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=81.06 E-value=1.7 Score=23.68 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHhhCCc
Q 020439 3 SSKLLSLLVTLYLLAPTS 20 (326)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~ 20 (326)
+||+++.++.++.+++++
T Consensus 7 mKkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 689999999888888775
No 91
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=79.62 E-value=13 Score=30.05 Aligned_cols=75 Identities=11% Similarity=-0.027 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHHhhCCccccCCCCChhhcccccHHHHHhhcCchhHHHHHHHHHHhhhCCCCCc-------chHHHHHH
Q 020439 3 SSKLLSLLVTLYLLAPTSISSDVSLSPEELTQIPVKFLDFAKKPEIFYWMVNIRRKIHENPELGF-------QEFETSKL 75 (326)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~-------~e~~~~~~ 75 (326)
|+|+++++++++++++|.. +....-. ..+...++. |..++++.|.++ +|.-.. ........
T Consensus 1 Mrk~l~~~~l~l~LaGCAt-~~~gnf~-~~s~~~a~~--------iA~D~v~qL~~~--ypPA~Tt~~l~q~~~D~Fg~a 68 (151)
T PRK13883 1 MRKIVLLALLALALGGCAT-SQYGNFV-QASAADQQK--------LATDAVQQLATL--YPPAQTRFELQQPTPDAFGQA 68 (151)
T ss_pred ChhHHHHHHHHHHHhcccC-CCCCccc-ccCHHHHHH--------HHHHHHHHHHHh--CCCcceEEEEecCCCcHHHHH
Confidence 5788888887777777762 2111100 111221111 336666666665 232110 12367789
Q ss_pred HHHHHhhcCCCeee
Q 020439 76 IRAELDQMGIPYKF 89 (326)
Q Consensus 76 l~~~l~~~G~~~~~ 89 (326)
|++-||+.|+.+..
T Consensus 69 L~~aLR~~GYaV~e 82 (151)
T PRK13883 69 LVKALRDKGYALLE 82 (151)
T ss_pred HHHHHHHcCeEEEe
Confidence 99999999999864
No 92
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=79.26 E-value=12 Score=29.98 Aligned_cols=77 Identities=16% Similarity=0.035 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHhhCCcccc---CCCC-ChhhcccccHHHHHhhcCchhHHHHHHHHHHhhhCCCCCc------chHHH
Q 020439 3 SSKLLSLLVTLYLLAPTSISS---DVSL-SPEELTQIPVKFLDFAKKPEIFYWMVNIRRKIHENPELGF------QEFET 72 (326)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~------~e~~~ 72 (326)
|+|++.++++++++++|.-.. +..+ .|...+...++.. ..+++..|.++ +|.-+. +..+.
T Consensus 1 mrk~~~~~~~al~LaGCaT~~~~G~~ts~~~~~~t~~aa~~i--------A~D~vsqLae~--~pPa~tt~~l~q~~d~F 70 (145)
T PRK13835 1 LRRLLAACILALLLSGCQTLATDGLTTSSAPAELSGPAASAI--------AGDMVSRLAEQ--IGPGTTTIKLKKDTSPF 70 (145)
T ss_pred ChhHHHHHHHHHHHhcccccCCCCCccCCCchhhcchHHHHH--------HHHHHHHHHHh--cCCCceEEEEeecCcHH
Confidence 567777777777777665422 1111 2333333333333 26777777775 443221 12467
Q ss_pred HHHHHHHHhhcCCCeee
Q 020439 73 SKLIRAELDQMGIPYKF 89 (326)
Q Consensus 73 ~~~l~~~l~~~G~~~~~ 89 (326)
...|++-||..|+.+..
T Consensus 71 g~aL~~aLr~~GYaVvt 87 (145)
T PRK13835 71 GQALEAALKGWGYAVVT 87 (145)
T ss_pred HHHHHHHHHhcCeEEee
Confidence 78899999999999865
No 93
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=75.07 E-value=11 Score=34.95 Aligned_cols=71 Identities=24% Similarity=0.164 Sum_probs=46.4
Q ss_pred ceEEEEECCCCCcEEEEEeecCcccCcCCCCCcccCccCCeeecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q 020439 94 TGVVGYIGTGQPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAE 173 (326)
Q Consensus 94 ~nvia~~~~~~~~~I~l~~H~DtVp~~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dE 173 (326)
+|+|+.-++. +..+++.+|.|+=..|.. |+. .|+++++.++..|...+ ....++.-+.|
T Consensus 179 y~~Ia~~~~e-n~vv~i~AH~DHW~~G~t---------DN~-------lg~~~AV~~~~~lr~~~----~~~~lv~FtAE 237 (486)
T COG4882 179 YNVIAVDGGE-NGVVLIGAHLDHWYTGFT---------DNI-------LGVAQAVETAGRLRGRG----LAAGLVVFTAE 237 (486)
T ss_pred EEEEEecCCC-CCceEEeechhhhhhccc---------chh-------hhHHHHHHHHHHHhhcC----cceeEEEEecc
Confidence 4566654333 378999999998766532 233 67888888888887654 23455555566
Q ss_pred C-Cc---------ccHHHHHHc
Q 020439 174 E-GG---------GGAKKMLDA 185 (326)
Q Consensus 174 E-~~---------~G~~~l~~~ 185 (326)
| ++ .|++.++++
T Consensus 238 E~g~p~~~sfyWa~GSr~~lk~ 259 (486)
T COG4882 238 EHGMPGMASFYWAAGSRGLLKE 259 (486)
T ss_pred ccCCCCCcceeecccchHHHhh
Confidence 6 53 478888774
No 94
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=72.60 E-value=1.2 Score=33.10 Aligned_cols=13 Identities=38% Similarity=0.378 Sum_probs=8.2
Q ss_pred CchhhHHHHHHHH
Q 020439 1 MGSSKLLSLLVTL 13 (326)
Q Consensus 1 ~~~~~~~~~~~~l 13 (326)
|.+|++|++.++|
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 8877766555443
No 95
>PRK02256 putative aminopeptidase 1; Provisional
Probab=71.20 E-value=7.8 Score=37.60 Aligned_cols=45 Identities=24% Similarity=0.255 Sum_probs=31.6
Q ss_pred CCeeecCCc--hHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-CcccHH
Q 020439 132 PGKMHACGH--DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAK 180 (326)
Q Consensus 132 ~g~l~GrG~--k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~ 180 (326)
++.|.|.+- ..++.+++.++..+. .++..++++++..|| |+.|++
T Consensus 251 ~efI~s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs~ga~ 298 (462)
T PRK02256 251 RSLIGAYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGSEGNT 298 (462)
T ss_pred cceeeccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCCcchh
Confidence 456666665 367777777776543 356789999999999 655444
No 96
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=64.52 E-value=21 Score=34.99 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=33.6
Q ss_pred ceEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHHH
Q 020439 267 QVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVHL 313 (326)
Q Consensus 267 ~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 313 (326)
+|+|++.++- --+.+++.+++|+++..+.+++.++++++.+
T Consensus 344 ~S~Nlg~v~~------~~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~ 384 (485)
T PRK15026 344 TSLNVGVVTM------TDNNVEIHCLIRSLIDSGKDYVVSMLDSLGK 384 (485)
T ss_pred eeeEEEEEEE------eCCEEEEEEEecCCCchHHHHHHHHHHHHHH
Confidence 5788888753 3367999999999999999999999888744
No 97
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=61.81 E-value=39 Score=29.69 Aligned_cols=62 Identities=11% Similarity=0.007 Sum_probs=33.0
Q ss_pred chhhHHHHHHHHHHhhCCccccCCCCChhhcccccHHHHHhhc-CchhHHHHHHHHHHhhhCCCCC
Q 020439 2 GSSKLLSLLVTLYLLAPTSISSDVSLSPEELTQIPVKFLDFAK-KPEIFYWMVNIRRKIHENPELG 66 (326)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~l~~ips~s 66 (326)
.++++++++++++++++|+.... .......+....+..+..+ .+. ++.++.++++.+...-|
T Consensus 3 ~~~~~~~~~~~~~~lsgCs~~~~-~~~~~~~~~~Y~~A~~~~~~g~y--~~Ai~~f~~l~~~yP~s 65 (243)
T PRK10866 3 RMKYLVAAATLSLFLAGCSGSKE-EVPDNPPSEIYATAQQKLQDGNW--KQAITQLEALDNRYPFG 65 (243)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCc-CCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCCCC
Confidence 46777776666666666652211 1110111122233344444 444 78889999988776544
No 98
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=60.35 E-value=18 Score=26.38 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=29.8
Q ss_pred EEEccChhhHHHHHHHHHHHHHHHHHHcCCeeee
Q 020439 292 TFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 292 diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
+++-+-.-..+++.+.+++.++++..+|+.+.+|
T Consensus 2 ~I~r~H~Lg~~eAr~~~~~~~~~l~~~~~~~~~W 35 (87)
T PF09650_consen 2 HIERPHSLGREEARRRAEELAEKLAEEYGVECTW 35 (87)
T ss_pred eEEecCCCCHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 4555667788999999999999999999999999
No 99
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=59.24 E-value=25 Score=26.56 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=18.5
Q ss_pred CcchHHHHHHHHHHHhhcCCCee
Q 020439 66 GFQEFETSKLIRAELDQMGIPYK 88 (326)
Q Consensus 66 s~~e~~~~~~l~~~l~~~G~~~~ 88 (326)
.+...++.+-|.+...+.|-..-
T Consensus 59 ~gsp~d~~~~La~KAda~GA~yY 81 (104)
T PRK14864 59 RGSPDDAEREIQAKANAAGADYY 81 (104)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEE
Confidence 35677888999999999998753
No 100
>TIGR01004 PulS_OutS lipoprotein, PulS/OutS family. This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae, the OutS protein of Erwinia chrysanthemi and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family.
Probab=57.23 E-value=58 Score=25.54 Aligned_cols=77 Identities=6% Similarity=-0.095 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHhhCCccccCCCCCh-hhcccccHHHHHhhcCchhHHHHHHHHHHhhhCCCCCcchHHHHHHHHHHHh
Q 020439 3 SSKLLSLLVTLYLLAPTSISSDVSLSP-EELTQIPVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELD 81 (326)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~ 81 (326)
++++++-++++. +++++++.+....| -..++..+++.+.+ ....+|+.-+..--+ .++..+..-+....+
T Consensus 6 l~~l~~~l~~~~-L~GCQq~~~~~~~~~~p~~~q~eqLA~L~-------A~~~YLK~~C~rsdi-Pd~~~I~raai~~A~ 76 (128)
T TIGR01004 6 LKCIAFGLCCVS-LSGCQQNPAIHKAASVPANEQLEQLASIV-------AASRYLKMQCNRSDL-PDDGSILKTANNVAI 76 (128)
T ss_pred HHHHHHHHHHHH-HHHccCCCCCCCCCCCChHHHHHHHHHHH-------HHHHHHHhcCCcccC-CcHHHHHHHHHHHHH
Confidence 445544444444 88888766444221 11122222222221 223344444433333 256667777777778
Q ss_pred hcCCCee
Q 020439 82 QMGIPYK 88 (326)
Q Consensus 82 ~~G~~~~ 88 (326)
..|++..
T Consensus 77 ~~gWd~~ 83 (128)
T TIGR01004 77 GKGWDSG 83 (128)
T ss_pred HcCCchh
Confidence 8888765
No 101
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=54.23 E-value=8.8 Score=31.35 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=28.6
Q ss_pred HhhhCCCCCcchHHHHHHHHHHHhhcCCCeeecc
Q 020439 58 KIHENPELGFQEFETSKLIRAELDQMGIPYKFPV 91 (326)
Q Consensus 58 ~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~ 91 (326)
.|+-.-+..|+.++++++++..|++.|.+|+..+
T Consensus 3 ~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~d 36 (175)
T COG4635 3 TLILYSTRDGQTRKIAEYIASHLRESGIQVDIQD 36 (175)
T ss_pred eEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeee
Confidence 3555667778999999999999999999998754
No 102
>PRK11372 lysozyme inhibitor; Provisional
Probab=47.41 E-value=22 Score=27.10 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=14.0
Q ss_pred CchhhHHHHHHHHHHhhCCc
Q 020439 1 MGSSKLLSLLVTLYLLAPTS 20 (326)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~ 20 (326)
|+||+++.++.+++|..+++
T Consensus 1 ~~mk~ll~~~~~~lL~gCs~ 20 (109)
T PRK11372 1 MSMKKLLIICLPVLLTGCSA 20 (109)
T ss_pred CchHHHHHHHHHHHHHHhcC
Confidence 88999887777666554444
No 103
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=45.85 E-value=93 Score=28.12 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=23.7
Q ss_pred ceEEEEEEEcCCccccccCeEEEEEEEEccCh
Q 020439 267 QVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSK 298 (326)
Q Consensus 267 ~t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~ 298 (326)
..+.++.++=|-... +|-.|.+.+|+|+.|+
T Consensus 160 ~~l~v~i~SFGfK~G-iP~dAD~VfDvRfLpN 190 (284)
T PF03668_consen 160 SRLTVTIQSFGFKYG-IPPDADLVFDVRFLPN 190 (284)
T ss_pred CceEEEEEEeccccC-CCCCCCEEEEcCcCCC
Confidence 346666666666554 7889999999999987
No 104
>PRK06156 hypothetical protein; Provisional
Probab=45.79 E-value=49 Score=32.64 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.3
Q ss_pred ceEEEEEEEcCCccccccCeEEEEEE
Q 020439 267 QVLTVAKFEGGGAFNIIPDSVTIGGT 292 (326)
Q Consensus 267 ~t~~i~~i~gG~~~n~iP~~~~~~~d 292 (326)
.+.++..++||+..|+||+.|.+.+.
T Consensus 239 ~~~~l~~~~gG~~~n~ip~~a~~~~~ 264 (520)
T PRK06156 239 KGAEIVAMTGGAFANQIPQTAVATLS 264 (520)
T ss_pred CceeEEEEEcCCcCCCCCCccEEEEe
Confidence 35678899999999999999998844
No 105
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.98 E-value=3.3e+02 Score=27.23 Aligned_cols=90 Identities=20% Similarity=0.293 Sum_probs=58.7
Q ss_pred HHHHHHHhhcCCCeeecc---------cCceEEEEECC--CC-CcEEEEEeecCcccCcCCCCCcccCccCCeeecCCch
Q 020439 74 KLIRAELDQMGIPYKFPV---------AVTGVVGYIGT--GQ-PPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHD 141 (326)
Q Consensus 74 ~~l~~~l~~~G~~~~~~~---------~~~nvia~~~~--~~-~~~I~l~~H~DtVp~~~~~~w~~~~~~~g~l~GrG~k 141 (326)
.++...+++.|.++.... ++.|+++.+.. ++ ...+++ +||-+..++ + ..
T Consensus 92 ~~~~~~~q~FGl~t~~~n~~~~P~e~y~G~NvyGilRAPRgdgtEsivl-----~vP~~~~~~--------~------~~ 152 (617)
T KOG3566|consen 92 AWAEVSMQEFGLETHTQNYSNGPFEEYSGENVYGILRAPRGDGTESIVL-----VVPYGRSSG--------S------NS 152 (617)
T ss_pred hHHHHHHHHhCccccccCccCCchhhcCCceEEEEEecCCCCCcceEEE-----EEecccCCC--------c------ch
Confidence 457778888898876522 25799998743 22 256777 466332110 1 13
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEEecCCCCcccHHHHHHc
Q 020439 142 AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDA 185 (326)
Q Consensus 142 ~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~l~~~ 185 (326)
++++.+++.++.+++. .-...||+++++-++ -.|...++++
T Consensus 153 ~~v~l~lsla~~f~r~-~yWsKDII~v~~d~~--~~g~~AwLea 193 (617)
T KOG3566|consen 153 ASVALLLSLADYFSRW-VYWSKDIIFVFTDGP--ALGLDAWLEA 193 (617)
T ss_pred hHHHHHHHHHHHhcCC-eeecccEEEEEeCCc--cccHHHHHHH
Confidence 7788888888877764 357899999999663 3567777765
No 106
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=44.70 E-value=54 Score=28.86 Aligned_cols=85 Identities=15% Similarity=0.226 Sum_probs=51.6
Q ss_pred CCcEEEEEeecCcccCcCCCCCcccCccCCeeecCCchHHHHHHHHHHHHH--HhccCCCCceEEEEEecCCC--C----
Q 020439 104 QPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKML--QVFRHEIKGTIVLVFQPAEE--G---- 175 (326)
Q Consensus 104 ~~~~I~l~~H~DtVp~~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a~~~l--~~~~~~~~~~i~~~~~~dEE--~---- 175 (326)
..|++.+.|-+--+-+.+. +-|. --++||.++++-.|++.+ ++.|..++++|.+.-...-- .
T Consensus 30 ~aptlGIiGRLGgigARP~--------~iGl--VSDaDGAi~ala~a~KL~~M~~kGd~L~GDVii~ThIcp~Apt~PH~ 99 (276)
T PF06675_consen 30 SAPTLGIIGRLGGIGARPE--------RIGL--VSDADGAIAALAAALKLLDMQAKGDVLPGDVIITTHICPDAPTRPHD 99 (276)
T ss_pred CCCeeEEEeeccccccccc--------ceee--eecCchHHHHHHHHHHHHHHHHcCCccCCcEEEEEecCCCCCCCCCC
Confidence 3488888877655533210 0011 123367788777777754 45688899999986542222 1
Q ss_pred -------cccHHHHHHccCCccccEEEEec
Q 020439 176 -------GGGAKKMLDAGALENVEAIFGLH 198 (326)
Q Consensus 176 -------~~G~~~l~~~g~~~~~d~~i~~~ 198 (326)
..+...+.+....+..|+++.++
T Consensus 100 PvpFM~sPv~~~~~n~~EV~p~mdAILSiD 129 (276)
T PF06675_consen 100 PVPFMGSPVDMATMNRHEVDPEMDAILSID 129 (276)
T ss_pred CcccccCccCHHHHHHhhcCcccceEEEEe
Confidence 14666676666666788998764
No 107
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=43.99 E-value=54 Score=24.12 Aligned_cols=35 Identities=6% Similarity=0.017 Sum_probs=30.3
Q ss_pred EEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeee
Q 020439 291 GTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 291 ~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
+.++-+-.-..++..+.+++.++++..+|+.+.+|
T Consensus 4 I~I~r~H~Lg~~eAr~~~e~~a~~l~~~~~~e~~W 38 (91)
T TIGR02610 4 ISVERDHSLGPAAARAKAEDLARKLTDRYGLASHW 38 (91)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHhCCEeEE
Confidence 55666777788999999999999999999998888
No 108
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=43.07 E-value=21 Score=31.63 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=18.9
Q ss_pred CchhhHHHHHHHHHHhhCCcc
Q 020439 1 MGSSKLLSLLVTLYLLAPTSI 21 (326)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~~ 21 (326)
|+..++|+++++++++++|+.
T Consensus 1 ~~~~~~l~~~~~~~~l~gC~~ 21 (249)
T PRK15348 1 MKVHRIVFLTVLTFFLTACDV 21 (249)
T ss_pred CchHHHHHHHHHHHHHhcCCh
Confidence 888999999999999999974
No 109
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=40.38 E-value=1.4e+02 Score=29.52 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=50.4
Q ss_pred CceEEEEECC--CC-CcEEEEEeecCcccCcCCCCCcccCccCCeeecCCchHHHHHHHHHHHHHHhccCCCCceEEEEE
Q 020439 93 VTGVVGYIGT--GQ-PPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVF 169 (326)
Q Consensus 93 ~~nvia~~~~--~~-~~~I~l~~H~DtVp~~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~ 169 (326)
+.|++|.+.. ++ ...+++..-+++.. + .-..++++.+++.++.+++.. -+.+||+|++
T Consensus 3 G~nvy~i~rapR~d~tEaivl~~~~~~~~--------------~----~~n~~~v~l~lal~~~~~~~~-~wsKDii~l~ 63 (504)
T PF04114_consen 3 GTNVYGILRAPRGDGTEAIVLVVPWRDSD--------------G----EYNAGGVALALALARYFRRQS-YWSKDIIFLF 63 (504)
T ss_pred ceEEEEEEecCCCCCceeEEEEEecCCCC--------------c----ccchhhHHHHHHHHHHhhhch-hhhccEEEEe
Confidence 5689888732 22 26788876554332 1 001378999999999998764 5789999999
Q ss_pred ecCCCCcccHHHHHHcc
Q 020439 170 QPAEEGGGGAKKMLDAG 186 (326)
Q Consensus 170 ~~dEE~~~G~~~l~~~g 186 (326)
+.+|. .|.+.++++.
T Consensus 64 ~~~~~--~g~~awl~~Y 78 (504)
T PF04114_consen 64 TDDEL--AGMQAWLEAY 78 (504)
T ss_pred cCCcc--hHHHHHHHHH
Confidence 86554 5788888753
No 110
>PRK02813 putative aminopeptidase 2; Provisional
Probab=39.69 E-value=37 Score=32.64 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhhcCCCeee-------c--------ccCceEEEEE-CCCC---CcEEEEEeecCcc
Q 020439 69 EFETSKLIRAELDQMGIPYKF-------P--------VAVTGVVGYI-GTGQ---PPFVALRADMDAL 117 (326)
Q Consensus 69 e~~~~~~l~~~l~~~G~~~~~-------~--------~~~~nvia~~-~~~~---~~~I~l~~H~DtV 117 (326)
+..+.+++++.|++.||.--. . .+...++|-. |..+ ..--++.+|+|..
T Consensus 21 ~~hav~~~~~~L~~~Gf~~l~e~~~w~l~~g~kyy~~r~~~sliAf~vg~~~~~~~g~~iv~aH~DsP 88 (428)
T PRK02813 21 PFHAVANVAQRLEAAGFTELDETDAWKLEPGGRYYVVRNGSSLIAFRVGEGAPAETGFRIVGAHTDSP 88 (428)
T ss_pred HHHHHHHHHHHHHHcCCeeccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCeEEEEEeccCC
Confidence 577899999999999995311 0 1233566654 3332 1346778899986
No 111
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=36.63 E-value=49 Score=31.69 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=39.7
Q ss_pred cEEEEEeecCcccC-cCCCCCccc------CccCCeee-cCCchH-HHHHHHHHHHHHHhccCCCCceEEEEEecCCC-C
Q 020439 106 PFVALRADMDALAM-EESVEWEHK------SKVPGKMH-ACGHDA-HVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-G 175 (326)
Q Consensus 106 ~~I~l~~H~DtVp~-~~~~~w~~~------~~~~g~l~-GrG~k~-~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~ 175 (326)
..+.|.+|+|.||. +......+. .+++.++- .+|++- +++.+++. |. ....++...++++|| +
T Consensus 62 ~~~~L~a~~d~V~~i~~~sh~Dt~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~---L~----~~~~P~~~~~t~~~ei~ 134 (414)
T COG2195 62 VPAVLQAHLDMVPEIGFISHHDTVPDPIGPNVNPQILKATLGADNIGLAIGLAV---LS----PEHFPLEVLLTGDEEIT 134 (414)
T ss_pred eeEEeeccccccccccccccccccccccccccCCceeeeccCcchhhhhhHHhh---cC----cccCCceeeeecceEEe
Confidence 56889999999995 332222222 12344554 567643 33322222 21 136789999999999 6
Q ss_pred cccHH
Q 020439 176 GGGAK 180 (326)
Q Consensus 176 ~~G~~ 180 (326)
+.|+.
T Consensus 135 ~dGa~ 139 (414)
T COG2195 135 TDGAT 139 (414)
T ss_pred ccCcc
Confidence 56665
No 112
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=34.96 E-value=1.4e+02 Score=26.50 Aligned_cols=58 Identities=9% Similarity=0.016 Sum_probs=39.8
Q ss_pred hhCCCCCc-chHHHHHHHHHHHhhcCCCeeecccCceEEEEECCCCCcEEEEEeecCcccC
Q 020439 60 HENPELGF-QEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAM 119 (326)
Q Consensus 60 ~~ips~s~-~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~I~l~~H~DtVp~ 119 (326)
.+||+..- +...-++-+.+.+++.|+.. .+.+..+|..+--.+....+|.||.=+.-.
T Consensus 136 s~i~t~~t~D~~~h~~~i~k~wk~rgi~F--~~~k~slISV~~h~~d~~~lFvGH~GVLv~ 194 (250)
T PF14133_consen 136 SRIPTENTKDIKVHAEKIQKYWKERGIKF--NNDKASLISVFLHDPDDNSLFVGHTGVLVP 194 (250)
T ss_pred CcCCccccCCHHHHHHHHHHHHHHcCcee--CCCceEEEEEEEEcCCCCeEEeeeEEEEEE
Confidence 35776543 34667888999999999988 333455665552224578999999988643
No 113
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=34.58 E-value=94 Score=22.42 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=16.7
Q ss_pred CchhhHHHHHHHHHHhhCCcccc
Q 020439 1 MGSSKLLSLLVTLYLLAPTSISS 23 (326)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~ 23 (326)
|+..|.|+++.+|+....-..+.
T Consensus 1 MKi~kv~~ff~~Ll~i~~l~p~~ 23 (84)
T PF09716_consen 1 MKISKVFYFFAFLLAINLLTPCL 23 (84)
T ss_pred CcHHHHHHHHHHHHHHHhCcCcc
Confidence 88888888888777666655544
No 114
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=34.37 E-value=58 Score=21.92 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=11.0
Q ss_pred CchhhHHHHHHHHHHhhCC
Q 020439 1 MGSSKLLSLLVTLYLLAPT 19 (326)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~ 19 (326)
|+.|++...++++++++..
T Consensus 1 M~~k~~~la~~~~L~~~~~ 19 (60)
T PF11471_consen 1 MKIKKLALAVAILLASSAC 19 (60)
T ss_pred CcccHHHHHHHHHHHHHHH
Confidence 6666665555555555444
No 115
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=32.98 E-value=1.7e+02 Score=26.52 Aligned_cols=30 Identities=23% Similarity=0.128 Sum_probs=23.0
Q ss_pred eEEEEEEEcCCccccccCeEEEEEEEEccCh
Q 020439 268 VLTVAKFEGGGAFNIIPDSVTIGGTFRAFSK 298 (326)
Q Consensus 268 t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~ 298 (326)
.+.+..++=|-... +|-.+.+.+|+|+.|+
T Consensus 164 ~~~i~~~SFg~k~g-~p~dad~vfDvR~lpN 193 (288)
T PRK05416 164 GLTVTVESFGFKYG-IPLDADLVFDVRFLPN 193 (288)
T ss_pred ceEEEEEeecccCC-CCCCCCEEEEeCcCCC
Confidence 45666666666555 6888999999999986
No 116
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=32.22 E-value=1.8e+02 Score=24.43 Aligned_cols=28 Identities=4% Similarity=-0.026 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhcCCCeeecccCceEEEE
Q 020439 71 ETSKLIRAELDQMGIPYKFPVAVTGVVGY 99 (326)
Q Consensus 71 ~~~~~l~~~l~~~G~~~~~~~~~~nvia~ 99 (326)
-..+.+++.|...||.+-.. +..|+...
T Consensus 92 llq~vl~~q~~srGfrig~n-~~~n~~i~ 119 (204)
T COG3056 92 LLQEVLEKQMTSRGFRVGPN-GEVNLQIT 119 (204)
T ss_pred HHHHHHHHHhhhcceEeccC-CCceEEEE
Confidence 35577888899999977532 23344443
No 117
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=30.26 E-value=1e+02 Score=20.26 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHhhCCcccc
Q 020439 3 SSKLLSLLVTLYLLAPTSISS 23 (326)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~ 23 (326)
||.+|..+++|.|.+...++|
T Consensus 1 mknllkillilafa~pvfass 21 (65)
T PF10880_consen 1 MKNLLKILLILAFASPVFASS 21 (65)
T ss_pred ChhHHHHHHHHHHhhhHhhhc
Confidence 345666777778877777665
No 118
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=29.03 E-value=2.1e+02 Score=27.04 Aligned_cols=89 Identities=16% Similarity=0.056 Sum_probs=47.8
Q ss_pred HHHHHhhcCCCeeecc--cCce-EEEEE--CCCCCcEEEEEeecCcccCcCCCCCcccCccCCeeecCCchHHHHHHHHH
Q 020439 76 IRAELDQMGIPYKFPV--AVTG-VVGYI--GTGQPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGA 150 (326)
Q Consensus 76 l~~~l~~~G~~~~~~~--~~~n-via~~--~~~~~~~I~l~~H~DtVp~~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a 150 (326)
..+.|++--++|.++. ..+. -++++ +|...+.|+|.+|+.+=...+ |+. +|++.+...
T Consensus 95 ~~~~L~dg~Y~V~IdS~l~~G~L~ygE~~ipG~s~~EillsthiCHPsmAN----------dnL-------SG~~v~~~L 157 (386)
T PF09940_consen 95 QLDALPDGEYEVVIDSTLEDGSLTYGEFVIPGESDEEILLSTHICHPSMAN----------DNL-------SGPAVLTFL 157 (386)
T ss_dssp HHHT--SSEEEEEEEEEEES-EEEEEEEEE--SSS-EEEEEEE----S-TT----------TTH-------HHHHHHHHH
T ss_pred HHhhCCCCceEEEEeeeecCCceeEEEEEecCCCCCeEEEEEeccCccccc----------ccc-------cHHHHHHHH
Confidence 3344444445555421 1122 24443 555458999999998755432 222 889999999
Q ss_pred HHHHHhccCCCCceEEEEEecCCCCcccHHHHHHcc
Q 020439 151 AKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAG 186 (326)
Q Consensus 151 ~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~l~~~g 186 (326)
++.|++.. ...+-.|+|.++ ..|+..++.+.
T Consensus 158 a~~L~~~~--~rytYRflf~Pe---TIGsI~yLskn 188 (386)
T PF09940_consen 158 AKWLKQLP--NRYTYRFLFVPE---TIGSITYLSKN 188 (386)
T ss_dssp HHHHTTS----SSEEEEEEE-T---THHHHHHHHH-
T ss_pred HHHHhcCC--cCceEEEEEccc---cHHHHHHHHHC
Confidence 99998764 448999999974 35777776653
No 119
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=28.99 E-value=91 Score=30.37 Aligned_cols=18 Identities=17% Similarity=0.421 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHhhcCCC
Q 020439 69 EFETSKLIRAELDQMGIP 86 (326)
Q Consensus 69 e~~~~~~l~~~l~~~G~~ 86 (326)
+..+.+++.+.|++.||.
T Consensus 22 ~~hav~~~~~~L~~~GF~ 39 (465)
T PTZ00371 22 PFHAVQELKERLKKSGFK 39 (465)
T ss_pred HHHHHHHHHHHHHHCcCE
Confidence 467888888888888885
No 120
>PF09981 DUF2218: Uncharacterized protein conserved in bacteria (DUF2218); InterPro: IPR014543 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2JPI_A.
Probab=27.99 E-value=1e+02 Score=22.46 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=27.8
Q ss_pred EEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeee
Q 020439 288 TIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSW 325 (326)
Q Consensus 288 ~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (326)
.+.+.+...+.+..+.+...|.+.+.+.+.+.+-.+.|
T Consensus 51 ~L~l~vea~~~~~L~~~~~vv~~HL~rFa~re~l~v~W 88 (89)
T PF09981_consen 51 ALTLRVEAPDAEALARLEDVVARHLERFAFREELEVTW 88 (89)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTSTTSS---B-
T ss_pred eEEEEEEeCCHHHHHHHHHHHHHHHHHHhccCCcccee
Confidence 34455667788899999999999999998888888888
No 121
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=27.19 E-value=90 Score=21.17 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=24.1
Q ss_pred EEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeeeC
Q 020439 291 GTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSWL 326 (326)
Q Consensus 291 ~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 326 (326)
+.+|-....+.+++++.+...+. ...+.++||+
T Consensus 8 vhirGvd~lsT~dI~~y~~~y~~---~~~~~~IEWI 40 (62)
T PF10309_consen 8 VHIRGVDELSTDDIKAYFSEYFD---EEGPFRIEWI 40 (62)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcc---cCCCceEEEe
Confidence 45677888898888887777632 2346789996
No 122
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=27.15 E-value=2e+02 Score=21.03 Aligned_cols=37 Identities=11% Similarity=-0.025 Sum_probs=27.8
Q ss_pred EEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCee
Q 020439 287 VTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFY 323 (326)
Q Consensus 287 ~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 323 (326)
..+.++++++...+..+-..-++.+++++-.+|++.+
T Consensus 3 g~l~l~l~lp~~~SLKeKR~vvksl~~klr~rfnvSv 39 (90)
T PF04456_consen 3 GVLRLELRLPGAHSLKEKRQVVKSLIDKLRNRFNVSV 39 (90)
T ss_dssp EEEEEEEE----SSHHHHHHHHHHHHHHHHHHSS-EE
T ss_pred EEEEEEEEeccccchhHhHHHHHHHHHHHHhhCCeEE
Confidence 4577888999999999999999999999999998754
No 123
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=25.93 E-value=61 Score=27.82 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHhhCCcc
Q 020439 3 SSKLLSLLVTLYLLAPTSI 21 (326)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~ 21 (326)
||++++++++|++.++++.
T Consensus 1 mk~i~~l~l~lll~~C~~~ 19 (216)
T PF11153_consen 1 MKKILLLLLLLLLTGCSTN 19 (216)
T ss_pred ChHHHHHHHHHHHHhhcCC
Confidence 5677777767766666664
No 124
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=25.88 E-value=55 Score=24.40 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHhhCCcccc
Q 020439 3 SSKLLSLLVTLYLLAPTSISS 23 (326)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~ 23 (326)
|||+++..++.++++++..+.
T Consensus 1 mKk~ll~~~lallLtgCatqt 21 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCATQT 21 (97)
T ss_pred CcHHHHHHHHHHHHcccceeE
Confidence 677777777666666665433
No 125
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=23.83 E-value=89 Score=24.13 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=24.5
Q ss_pred CCCCCcchHHHHHHHHHHHhhcCCCeee
Q 020439 62 NPELGFQEFETSKLIRAELDQMGIPYKF 89 (326)
Q Consensus 62 ips~s~~e~~~~~~l~~~l~~~G~~~~~ 89 (326)
.-|.+|+.+++++.+.+.+++.|++++.
T Consensus 5 y~S~tGnT~~~A~~i~~~~~~~g~~v~~ 32 (140)
T TIGR01753 5 YASMTGNTEEMANIIAEGLKEAGAEVDL 32 (140)
T ss_pred EECCCcHHHHHHHHHHHHHHhcCCeEEE
Confidence 3577899999999999999999998764
No 126
>PF05140 ResB: ResB-like family ; InterPro: IPR007816 This domain is found in a number of known and suspected cytochrome c biogenesis proteins, including ResB []. Mutations in ResB indicate that they are essential for growth []. ResB is predicted to be a transmembrane protein.
Probab=23.72 E-value=2e+02 Score=27.86 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHhhcCCCeeecc
Q 020439 69 EFETSKLIRAELDQMGIPYKFPV 91 (326)
Q Consensus 69 e~~~~~~l~~~l~~~G~~~~~~~ 91 (326)
..++.+.+++.|++.|+.+...+
T Consensus 109 ~~~~~~~~~~~L~~~gyrv~~~~ 131 (464)
T PF05140_consen 109 PEEALERLAALLKKKGYRVRRQE 131 (464)
T ss_pred hHHHHHHHHHHHHhCCcEEEEec
Confidence 46788999999999999987643
No 127
>PRK04330 hypothetical protein; Provisional
Probab=23.62 E-value=2e+02 Score=20.97 Aligned_cols=39 Identities=5% Similarity=-0.080 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCC
Q 020439 48 IFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIP 86 (326)
Q Consensus 48 ~~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~ 86 (326)
.+++.+..|.++++-.|+..+-+++++-..+.|...+.+
T Consensus 10 ~ik~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~e~~~ 48 (88)
T PRK04330 10 KIKQAIQMLEEIINDTSVPRNIRRAATEAKEILLNEEES 48 (88)
T ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCcCcc
Confidence 457889999999999999999999999999999887754
No 128
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.44 E-value=1.9e+02 Score=21.19 Aligned_cols=39 Identities=8% Similarity=0.073 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhCCCCCcchHHHHHHHHHHHhhcCCCe
Q 020439 49 FYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPY 87 (326)
Q Consensus 49 ~~~~i~~l~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~ 87 (326)
+.+.+++|+++++=-++..+-+++++-..+.|...|-+.
T Consensus 15 i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p 53 (93)
T COG1698 15 INQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESP 53 (93)
T ss_pred HHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCc
Confidence 377888999998888899999999999999999888654
No 129
>PF14088 DUF4268: Domain of unknown function (DUF4268)
Probab=23.38 E-value=2.5e+02 Score=22.06 Aligned_cols=43 Identities=9% Similarity=0.042 Sum_probs=36.7
Q ss_pred cCeEEEEEEEEccChhhHHHHHHHHHHHHHHHHHHcCCeeeeC
Q 020439 284 PDSVTIGGTFRAFSKESIIQLKQRIEEVHLLIVANSNSFYSWL 326 (326)
Q Consensus 284 P~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 326 (326)
-..+.+.+++.........++.+.+.+.-+.+.+.+|..++|.
T Consensus 49 ~~~~~V~l~I~~~d~~~n~~~fe~L~~~k~~IE~~~g~~l~W~ 91 (140)
T PF14088_consen 49 KKRARVELYIDRPDKEENKEIFEQLKSQKEEIEEEFGEELEWE 91 (140)
T ss_pred CCEEEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEee
Confidence 3578888888888777788899999999999999999999983
No 130
>COG1360 MotB Flagellar motor protein [Cell motility and secretion]
Probab=23.07 E-value=3.2e+02 Score=23.96 Aligned_cols=55 Identities=9% Similarity=0.001 Sum_probs=35.0
Q ss_pred EEEEEeecCcccCcCCCCCcccCccCCeeecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q 020439 107 FVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE 174 (326)
Q Consensus 107 ~I~l~~H~DtVp~~~~~~w~~~~~~~g~l~GrG~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 174 (326)
.|.+.||.|-+|.... |+ +.+ +...+=+..+++.|.+.|..+...+.+..-+|-+
T Consensus 165 ~I~I~GHTDn~p~~~~----~~---sNW------eLS~aRA~~v~~~L~~~g~~~~~~~~~~G~gd~~ 219 (244)
T COG1360 165 NIRIEGHTDNVPIKGS----FY---SNW------ELSAARAQSVVRVLINGGLVEAKRLSVVGYADTR 219 (244)
T ss_pred eEEEEeCCCCCCcCCC----CC---chH------HHHHHHHHHHHHHHHHcCCCCcceEEEEeccccc
Confidence 8999999999997542 11 111 3455566777777877554455566665555544
No 131
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.44 E-value=1.3e+02 Score=25.67 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=20.0
Q ss_pred CchhhHHHHHHHHHHh-hCCccccCCCCChhhcccccHHHHHhhcCc
Q 020439 1 MGSSKLLSLLVTLYLL-APTSISSDVSLSPEELTQIPVKFLDFAKKP 46 (326)
Q Consensus 1 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (326)
|-|+|.|+.+.+++.. +......+.+.+...-.+..++.+..+.++
T Consensus 1 ~~m~k~l~~~~ll~~a~a~~~~~~~~~~~~~~v~~~a~~~ls~lk~~ 47 (202)
T COG2854 1 MMMKKSLTILALLVIAFASSLAAAAPANPYSLVQEAADKVLSILKNN 47 (202)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHhcc
Confidence 4456666655544443 222222223333333444445555444443
No 132
>PRK10449 heat-inducible protein; Provisional
Probab=21.87 E-value=91 Score=24.82 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHhhCCcc
Q 020439 3 SSKLLSLLVTLYLLAPTSI 21 (326)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~ 21 (326)
|||++.++++.+++++++.
T Consensus 1 mk~~~~~~~~~~~l~~C~~ 19 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVS 19 (140)
T ss_pred ChhHHHHHHHHHHHHHhcC
Confidence 5788877765555555554
No 133
>PF14395 COOH-NH2_lig: Phage phiEco32-like COOH.NH2 ligase-type 2
Probab=21.05 E-value=1.3e+02 Score=26.75 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=31.3
Q ss_pred EEEEEccChhhHHHHHHHHHHHHHHHHHHcC-CeeeeC
Q 020439 290 GGTFRAFSKESIIQLKQRIEEVHLLIVANSN-SFYSWL 326 (326)
Q Consensus 290 ~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~ 326 (326)
..++|..|..++.++.+.|++.+..++++-. -.++|+
T Consensus 50 laElRP~P~~~P~~L~~~i~~~l~~A~~~i~~~~l~W~ 87 (261)
T PF14395_consen 50 LAELRPAPSPDPAELFENIRRALREAARRIPDRSLEWL 87 (261)
T ss_pred ceecCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEe
Confidence 5678999999999999999999999887664 457774
No 134
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=20.85 E-value=1.7e+02 Score=23.48 Aligned_cols=9 Identities=11% Similarity=0.198 Sum_probs=4.1
Q ss_pred HhhCCcccc
Q 020439 15 LLAPTSISS 23 (326)
Q Consensus 15 ~~~~~~~~~ 23 (326)
|.++++.+.
T Consensus 16 Lvsc~~p~~ 24 (142)
T TIGR03042 16 LVSCSGPAA 24 (142)
T ss_pred HHHcCCCcc
Confidence 444444444
No 135
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=20.81 E-value=3.3e+02 Score=19.72 Aligned_cols=43 Identities=7% Similarity=0.023 Sum_probs=28.4
Q ss_pred eEEEEEEEcCCccccccCeEEEEEEEEccChhhHHHHHHHHHHHH
Q 020439 268 VLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVH 312 (326)
Q Consensus 268 t~~i~~i~gG~~~n~iP~~~~~~~diR~~~~~~~~~~~~~i~~~~ 312 (326)
-+|+..++.|... .|+-..+++-+-.......+++.+++++++
T Consensus 27 g~NI~SLtvg~Te--~~~iSRmtivv~~~d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 27 QYNIDTLHVTHSE--QPGISNMEIQVDIQDDTSLHILIKKLKQQI 69 (84)
T ss_pred CcCeeeEEecccC--CCCceEEEEEEeCCCHHHHHHHHHHHhCCc
Confidence 4678888877644 477777777765455666677777766554
No 136
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.75 E-value=53 Score=25.12 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHhhCCcc
Q 020439 3 SSKLLSLLVTLYLLAPTSI 21 (326)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~ 21 (326)
|||+++++++|++++.+.+
T Consensus 1 MKk~~ll~~~ll~s~~a~A 19 (114)
T PF11777_consen 1 MKKIILLASLLLLSSSAFA 19 (114)
T ss_pred CchHHHHHHHHHHHHHHhh
Confidence 5777877777777766665
No 137
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=20.73 E-value=56 Score=20.91 Aligned_cols=24 Identities=8% Similarity=0.267 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHhhCCccccCCC
Q 020439 3 SSKLLSLLVTLYLLAPTSISSDVS 26 (326)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ 26 (326)
|||++.+++.+++++.....++..
T Consensus 2 mKk~i~~i~~~l~~~~~l~~CnTv 25 (48)
T PRK10081 2 VKKTIAAIFSVLVLSTVLTACNTT 25 (48)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhh
Confidence 677777755544444433333333
No 138
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=20.70 E-value=1.1e+02 Score=21.57 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=15.9
Q ss_pred CCc--hHHHHHHHHHHHHHHh
Q 020439 138 CGH--DAHVAMLLGAAKMLQV 156 (326)
Q Consensus 138 rG~--k~~~a~~l~a~~~l~~ 156 (326)
||+ |++..++..+++.|++
T Consensus 38 RGSs~rgg~~Alr~~~~~lk~ 58 (74)
T PF04028_consen 38 RGSSSRGGARALREMLRALKE 58 (74)
T ss_pred EeCCCCcHHHHHHHHHHHHHC
Confidence 555 7999999999999874
No 139
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=20.35 E-value=1e+02 Score=23.98 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=23.7
Q ss_pred CCCCcchHHHHHHHHHHHhhcCCCeee
Q 020439 63 PELGFQEFETSKLIRAELDQMGIPYKF 89 (326)
Q Consensus 63 ps~s~~e~~~~~~l~~~l~~~G~~~~~ 89 (326)
-|.+|+-+++|+.|.+.|++.|++++.
T Consensus 4 ~S~tG~te~~A~~ia~~l~~~g~~~~~ 30 (143)
T PF00258_consen 4 GSMTGNTEKMAEAIAEGLRERGVEVRV 30 (143)
T ss_dssp ETSSSHHHHHHHHHHHHHHHTTSEEEE
T ss_pred ECCchhHHHHHHHHHHHHHHcCCceee
Confidence 367889999999999999999998765
Done!