Query 020441
Match_columns 326
No_of_seqs 170 out of 1166
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 03:01:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.8 8.6E-18 2.9E-22 157.2 23.8 287 2-313 123-433 (451)
2 3o7q_A L-fucose-proton symport 99.8 1.9E-17 6.3E-22 154.4 20.0 261 2-291 121-405 (438)
3 4gc0_A D-xylose-proton symport 99.7 4.1E-15 1.4E-19 140.8 19.8 273 2-290 130-429 (491)
4 4aps_A DI-OR tripeptide H+ sym 99.6 5.4E-15 1.8E-19 140.0 17.7 276 2-291 112-446 (491)
5 2gfp_A EMRD, multidrug resista 99.6 8.2E-16 2.8E-20 140.6 7.5 254 2-291 92-350 (375)
6 2cfq_A Lactose permease; trans 99.4 6.6E-13 2.3E-17 123.5 9.3 113 171-291 259-373 (417)
7 2xut_A Proton/peptide symporte 99.3 8.9E-12 3E-16 118.9 14.5 118 173-290 337-464 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.0 2.1E-08 7.3E-13 94.5 19.4 138 168-313 49-196 (491)
9 3o7q_A L-fucose-proton symport 99.0 1.2E-08 4.2E-13 94.5 15.7 120 166-291 54-177 (438)
10 1pw4_A Glycerol-3-phosphate tr 98.8 7.5E-08 2.6E-12 89.4 14.7 117 168-290 59-178 (451)
11 2xut_A Proton/peptide symporte 98.7 1.7E-07 5.8E-12 89.1 14.8 113 171-291 54-172 (524)
12 2gfp_A EMRD, multidrug resista 98.7 1.6E-07 5.5E-12 85.2 13.4 118 166-291 28-148 (375)
13 4gc0_A D-xylose-proton symport 98.1 2.1E-05 7.1E-10 73.8 11.8 114 172-288 56-183 (491)
14 2cfq_A Lactose permease; trans 97.9 3.8E-06 1.3E-10 77.6 3.2 78 132-211 3-82 (417)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.80 E-value=8.6e-18 Score=157.17 Aligned_cols=287 Identities=9% Similarity=-0.010 Sum_probs=182.9
Q ss_pred chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCC-ch
Q 020441 2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSG-TT 80 (326)
Q Consensus 2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~-~~ 80 (326)
+.+|+++|++.|..+++..+++.|..| +++|++..|+.....++|.++|+.++..+... .+ ||
T Consensus 123 ~~~~~l~G~~~~~~~~~~~~~i~~~~~----------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------~g~w~ 186 (451)
T 1pw4_A 123 FVLLFLCGWFQGMGWPPCGRTMVHWWS----------QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW------FNDWH 186 (451)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCT----------TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH------TCCST
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHCC----------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccHH
Confidence 568999999999999999999999998 46899999999999999999999998665431 34 88
Q ss_pred hhHHHHHHHHHHHHHH-HHHccCCcccccc---chhhh--------chhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 020441 81 LLFIVFLGVITLGTIL-MCFLRKEEDKGEK---ETADA--------SVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS 148 (326)
Q Consensus 81 ~~f~~~~~i~~l~~~l-~~~l~~~~~~~~~---~~~~~--------~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~ 148 (326)
..|.+..++.++..++ .+++|+++++.+. ++.++ +.+++.+.++.. ..+.+++|+...+....+..
T Consensus 187 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 264 (451)
T 1pw4_A 187 AALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIF--MQYVLPNKLLWYIAIANVFV 264 (451)
T ss_dssp TCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHH--HHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccch--HHHHHcCHHHHHHHHHHHHH
Confidence 8887766555554444 3555543322110 00000 000011111110 13456777766544333333
Q ss_pred HHHHHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCC--CChhhHHHHHHHHHH-HHHHHHHhcc
Q 020441 149 GLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGL--PSITFIVSGGAIAQV-VVFLWILINY 223 (326)
Q Consensus 149 g~~~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~--g~~~~i~~~g~i~~~-~~~~~~~l~~ 223 (326)
+........ +.+.+..+..|.+ ..+....+.+++..+++++.|++.||+ ++|+ .+..+..+.. ...+. +..
T Consensus 265 ~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~ 340 (451)
T 1pw4_A 265 YLLRYGILD-WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-ATGVFFMTLVTIATIV--YWM 340 (451)
T ss_dssp HHHHHHHHH-HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-HHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHH--HHH
Confidence 322211112 2223444445543 678888999999999999999999998 8885 5554544433 33222 223
Q ss_pred cCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHH-HHHHHHHHhhhhh----HHHHHH
Q 020441 224 SVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCA-SIAVVFFIGPYIS----LQAMLI 297 (326)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~-g~~i~~~i~~~~~----~~~~~~ 297 (326)
.++.+ .+...+..++.|++.+..++..+.+..+.+|++ +..+++.++..+.+ |.++++.+...+. .....+
T Consensus 341 ~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 417 (451)
T 1pw4_A 341 NPAGN---PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM 417 (451)
T ss_dssp CCTTC---HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHH
T ss_pred hcccC---HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 22211 345666777889988888888899999999987 57789999999999 9999988877653 223334
Q ss_pred HHHHHHHHHHHHHHHH
Q 020441 298 VMVVGICVALVGILFL 313 (326)
Q Consensus 298 ~~~~~~~~~~~~~~~~ 313 (326)
+..++.+++.+.....
T Consensus 418 ~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 418 VMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455555555444
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.77 E-value=1.9e-17 Score=154.42 Aligned_cols=261 Identities=9% Similarity=0.039 Sum_probs=165.8
Q ss_pred chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHh-cCCCCC------
Q 020441 2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL-KDDKGG------ 74 (326)
Q Consensus 2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~-~~~~~~------ 74 (326)
+.+|+++|++.|..+++..+++.|..| +++|++..|+......+|..+|++++..+. ......
T Consensus 121 ~~~~~l~G~~~~~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 190 (438)
T 3o7q_A 121 LVGLFIIAAGLGCLETAANPFVTVLGP----------ESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLD 190 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSC----------STTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHH
T ss_pred HHHHHHHHhhHHHhhhhHHHHHHHHcC----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 578999999999999999999999998 568999999999999999999999987776 322100
Q ss_pred -------CCC------CchhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHH
Q 020441 75 -------STS------GTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLI 141 (326)
Q Consensus 75 -------~~~------~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll 141 (326)
..+ +||..|.+..++..+..++.++.+.|++++++++.+++ .+.++. ..+++++|+....
T Consensus 191 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~ 263 (438)
T 3o7q_A 191 KMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ----GSFSAS---LSRLARIRHWRWA 263 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST----TSHHHH---HHHHTTCSHHHHH
T ss_pred cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc----cchhhh---HHHHHhChHHHHH
Confidence 001 18877866554444444444555444333221111111 111222 2235678776654
Q ss_pred HHHH-HHHHHHHHHHHhhccccc-ccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHH
Q 020441 142 IPLF-AYSGLQQAFVWAEFTKEI-VTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL 217 (326)
Q Consensus 142 ~p~~-~~~g~~~~f~~~~~~~~~-~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~ 217 (326)
.... ++.+....+ ... .+.+ .++.+|. ...+....+.+++..++.++.|++.||++||+ ++..+.++.....+
T Consensus 264 ~~~~~~~~~~~~~~-~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-~~~~~~~~~~~~~~ 340 (438)
T 3o7q_A 264 VLAQFCYVGAQTAC-WSY-LIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK-VLAAYALIAMALCL 340 (438)
T ss_dssp HHHHHHHHHHHHHH-HHH-HHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHH-HHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHH
Confidence 4332 222222221 112 2234 4444454 36788888999999999999999999999985 65555555444332
Q ss_pred HHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441 218 WILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS 291 (326)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~ 291 (326)
.. .+.++ ....+..++.|++.+...+..+++..+.+|+++..+.+... ...+|.++++.+...+.
T Consensus 341 ~~--~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~ 405 (438)
T 3o7q_A 341 IS--AFAGG------HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVS 405 (438)
T ss_dssp HH--HHCCH------HHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred HH--HHcCC------cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHH
Confidence 21 22232 22344457888999988899999989999977544444333 45578888777776654
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.66 E-value=4.1e-15 Score=140.77 Aligned_cols=273 Identities=12% Similarity=0.033 Sum_probs=147.6
Q ss_pred chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCC--CCCCCCc
Q 020441 2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGT 79 (326)
Q Consensus 2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~--~~~~~~~ 79 (326)
+.+|+++|+|.|..++...+|++|.+| +++||+..+........+.+++.+++.......+ ....+.|
T Consensus 130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p----------~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 130 VIYRIIGGIGVGLASMLSPMYIAELAP----------AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC----------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC----------HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 568999999999999999999999999 4699999998888888888888888776654322 2344668
Q ss_pred hhhHHHHHHHHHHHHHHHHHccCCcc-----ccccchhh---h------ch----hhhhHHHHHHH--HHHHhhcchhhH
Q 020441 80 TLLFIVFLGVITLGTILMCFLRKEED-----KGEKETAD---A------SV----NFYSYLVSLSK--SITTLLADVRML 139 (326)
Q Consensus 80 ~~~f~~~~~i~~l~~~l~~~l~~~~~-----~~~~~~~~---~------~~----~~~~~~~~~~k--~~~~~~~~~~~l 139 (326)
|.++.+.....++..+..+++|++.+ .++++..+ + .. ..+....++-+ .....+..++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIV 279 (491)
T ss_dssp HHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHH
T ss_pred HHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHH
Confidence 87665444334333333444443321 01000000 0 00 00000000000 011112223333
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHH
Q 020441 140 LIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL 217 (326)
Q Consensus 140 ll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~ 217 (326)
......+...+........|.+.+.. ..+. ........+.++...++.++.+.+.||+|||+ ....+.....++.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~-~~~~~~~~~~~~~~ 357 (491)
T 4gc0_A 280 IGVMLSIFQQFVGINVVLYYAPEVFK-TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP-LQIIGALGMAIGMF 357 (491)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHhcchHHHH-hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcc-hhccchHHHHHHHH
Confidence 22222222111111111122221111 1222 23445567778888999999999999999995 65555544443322
Q ss_pred HH-HhcccCCCCCcchHHHHHHHHHHh-hhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441 218 WI-LINYSVTSGVLGTLYPLIMAALLG-IGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI 290 (326)
Q Consensus 218 ~~-~l~~~~~~~~~~~~~~~~~~~l~G-~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~ 290 (326)
.. .......+ .....+...++. .....+.+..+.+.+|.||.+ |..+.+.....+.+++.++..+.+.+
T Consensus 358 ~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l 429 (491)
T 4gc0_A 358 SLGTAFYTQAP----GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMM 429 (491)
T ss_dssp HHHHHHHTTCC----HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHhcccc----hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11112221 122222222222 223334566778899999987 67788887888888887777766654
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.64 E-value=5.4e-15 Score=140.02 Aligned_cols=276 Identities=14% Similarity=0.046 Sum_probs=155.6
Q ss_pred chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441 2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL 81 (326)
Q Consensus 2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~ 81 (326)
+.+|+++|++.|..+++..+++.|..|++ +++|++.++++....++|..+|+.++..+... .+||.
T Consensus 112 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~g~~~ 177 (491)
T 4aps_A 112 FGSIILIIIGTGFLKPNVSTLVGTLYDEH--------DRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA------AGYHV 177 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSC--------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------SCHHH
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHcCcc--------cccceeeehHHHHHHHHHHHHHHHHHHHHHhh------hhHHH
Confidence 56899999999999999999999998843 23478888888888899999999988776542 46898
Q ss_pred hHHHHHHHHHHHHHHHHHccCC-cccccc--chhhhchhhhhHHHH----------------------------------
Q 020441 82 LFIVFLGVITLGTILMCFLRKE-EDKGEK--ETADASVNFYSYLVS---------------------------------- 124 (326)
Q Consensus 82 ~f~~~~~i~~l~~~l~~~l~~~-~~~~~~--~~~~~~~~~~~~~~~---------------------------------- 124 (326)
.|.+..++.+++.++.++.+++ .+++++ ++.+++++.++..+.
T Consensus 178 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (491)
T 4aps_A 178 AFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVA 257 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHH
Confidence 8877655555555554443221 111100 000000000000000
Q ss_pred ----------HHHHHHHhhcch-hhHHHHHHHHHHHHH-HHHH-Hhhcccccccccccc--hhhHHHHHHHHHHHHHHHh
Q 020441 125 ----------LSKSITTLLADV-RMLLIIPLFAYSGLQ-QAFV-WAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSL 189 (326)
Q Consensus 125 ----------~~k~~~~~~~~~-~~lll~p~~~~~g~~-~~f~-~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~ 189 (326)
..++.....+++ +.....+..+..... ..+. ...+.+.+..+..+. ...+....+.++...++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (491)
T 4aps_A 258 IAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTP 337 (491)
T ss_dssp HHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHH
Confidence 000000000111 111112222111111 1111 011111122222222 2455666778888889999
Q ss_pred hhhhhccCCCChhhH----HHHHHHHHHHHHHHHHh-c-ccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccC
Q 020441 190 AAGRLTTGLPSITFI----VSGGAIAQVVVFLWILI-N-YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH 263 (326)
Q Consensus 190 ~~G~l~d~~g~~~~i----~~~g~i~~~~~~~~~~l-~-~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~ 263 (326)
+.|++.||++||+.. +..+.++....+..... . ...+.+...++...+..++.|++.+...+..+.+..+.+|+
T Consensus 338 ~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~ 417 (491)
T 4aps_A 338 FFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK 417 (491)
T ss_dssp HHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence 999999999887421 22444443333221111 1 10100001134566677888999999899999999999998
Q ss_pred C-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441 264 D-TEGAFAQLKVWQCASIAVVFFIGPYIS 291 (326)
Q Consensus 264 ~-~~~~fa~~~~~~~~g~~i~~~i~~~~~ 291 (326)
+ +..+.+.++....+|..++..+.+.+.
T Consensus 418 ~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 418 AFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp TCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 577888999999999999999987664
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.60 E-value=8.2e-16 Score=140.61 Aligned_cols=254 Identities=14% Similarity=0.036 Sum_probs=160.5
Q ss_pred chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441 2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL 81 (326)
Q Consensus 2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~ 81 (326)
+.+|+++|++.+..+++..+++.|..| +++|++..|+.....+.+..+|+.++..+.. ..+||.
T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~~~~~ 155 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGVMARTLPRDLYE----------RTQLRHANSLLNMGILVSPLLAPLIGGLLDT------MWNWRA 155 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC------HHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHCC----------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------hccHHH
Confidence 468999999999999999999999988 4689999999999999999999999876642 246887
Q ss_pred hHHHHHHHHHHHHHH-HHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcc
Q 020441 82 LFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFT 160 (326)
Q Consensus 82 ~f~~~~~i~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~ 160 (326)
.|.+..++..+..++ .+++|+++++++++ +++.+++++ .+++|+........+..+........ +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 222 (375)
T 2gfp_A 156 CYLFLLVLCAGVTFSMARWMPETRPVDAPR-----TRLLTSYKT-------LFGNSGFNCYLLMLIGGLAGIAAFEA-CS 222 (375)
T ss_dssp HHHHHHHHHHHHHCCCCCSSCCCSTTTCCC-----CCTTTCSTH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHHHHHHHHHCcccCCCCccc-----ccHHHHHHH-------HhcCcchHHHHHHHHHHHHHHHHHHH-HH
Confidence 776554444333321 22333322211110 011122222 34455554433222222222222222 22
Q ss_pred cccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHH-HHHHHHHHHhcc-cCCCCCcchHHHH
Q 020441 161 KEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIA-QVVVFLWILINY-SVTSGVLGTLYPL 236 (326)
Q Consensus 161 ~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~-~~~~~~~~~l~~-~~~~~~~~~~~~~ 236 (326)
+.+..+..|. ...+....+.+++..+++++.|++.||.+++ . ..+... ............ .+++ .+..+
T Consensus 223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 295 (375)
T 2gfp_A 223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--M-WQSVICCLLAGLLMWIPDWFGVMN----VWTLL 295 (375)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--H-HHHHHHHHHTSSSSSHHHHHHHHH----HHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHhhhcccc----HHHHH
Confidence 2344444454 3678888899999999999999999987653 2 222222 111111000111 1111 24455
Q ss_pred HHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441 237 IMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS 291 (326)
Q Consensus 237 ~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~ 291 (326)
+..++.|++.+..++...++..+.+|+++..+.+.++..+.+|..++..+...+.
T Consensus 296 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 296 VPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp HHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6678889999999999999999999966677899999999999998888877664
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.39 E-value=6.6e-13 Score=123.49 Aligned_cols=113 Identities=8% Similarity=0.019 Sum_probs=80.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhh
Q 020441 171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN 250 (326)
Q Consensus 171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~ 250 (326)
...++...+.++.+.++.++.|++.||++||+ ++..+..+....+.. +...++ ++...+..++.+++.+..+
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-~l~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~l~~~~~~~~~ 330 (417)
T 2cfq_A 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKN-ALLLAGTIMSVRIIG--SSFATS-----ALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHH--HTTCCS-----HHHHHHHTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-HHHHHHHHHHHHHHH--HHHhcc-----HHHHHHHHHHHHHHHHHHH
Confidence 34567777888888999999999999999985 555555554443322 223333 2444555566777777777
Q ss_pred hhhHhhHHhhccCC-chhhhhH-HHHHHHHHHHHHHHHhhhhh
Q 020441 251 TQLSALLGILFKHD-TEGAFAQ-LKVWQCASIAVVFFIGPYIS 291 (326)
Q Consensus 251 ~~~~~il~~~f~~~-~~~~fa~-~~~~~~~g~~i~~~i~~~~~ 291 (326)
+....+..+.+|++ +.++++. ++..+.+|..+++.+.+.+.
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 77788999999987 4667775 68888899988888887653
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.35 E-value=8.9e-12 Score=118.86 Aligned_cols=118 Identities=7% Similarity=-0.018 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhc----cCCCCh---hhHHHHHHHHHHHHHHHHHh-cccCC-CCCcchHHHHHHHHHHh
Q 020441 173 VGGAMAVYGAFDAICSLAAGRLT----TGLPSI---TFIVSGGAIAQVVVFLWILI-NYSVT-SGVLGTLYPLIMAALLG 243 (326)
Q Consensus 173 ~~~~~~~~gi~~~i~~~~~G~l~----d~~g~~---~~i~~~g~i~~~~~~~~~~l-~~~~~-~~~~~~~~~~~~~~l~G 243 (326)
.+....+.++...+++++.+++. ||.+++ ...+..+.++....++.... ....+ ......+...+..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 44455555566677778888764 554332 11344454444433322111 10000 00011345566788899
Q ss_pred hhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441 244 IGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI 290 (326)
Q Consensus 244 ~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~ 290 (326)
++.+...+..+++..+..|++ +..+.+.++..+.+|..++..+.+.+
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~ 464 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSV 464 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999976 57788888999999999888887655
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.01 E-value=2.1e-08 Score=94.47 Aligned_cols=138 Identities=15% Similarity=0.223 Sum_probs=100.7
Q ss_pred ccch--hhHHHHHHHHHHHHHHHhhhhhhccC-CCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhh
Q 020441 168 LGVS--GVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI 244 (326)
Q Consensus 168 lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~-~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~ 244 (326)
+|.+ +.+++..++.++..+++++.|+++|| +|||+ ++..+.++..+..+.. ...++ ++..++..++.|+
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~-~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~l~g~ 120 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP-AVFWGGVLIMLGHIVL--ALPFG-----ASALFGSIILIII 120 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH-HHHHHHHHHHHHHHHH--HSCCS-----TTHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHHHHH--HHhhh-----HHHHHHHHHHHHH
Confidence 5554 78899999999999999999999999 89995 7777766665544332 33333 2556777888999
Q ss_pred hhHHhhhhhHhhHHhhccCCc---hhhhhHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHHH
Q 020441 245 GDGVLNTQLSALLGILFKHDT---EGAFAQLKVWQCASIAVVFFIGPYIS----LQAMLIVMVVGICVALVGILFL 313 (326)
Q Consensus 245 ~d~~~~~~~~~il~~~f~~~~---~~~fa~~~~~~~~g~~i~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 313 (326)
+.+...+...+++++.+|+++ ..+++.++...++|..+++.+...+. .....++..+..+++.+.+...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 121 GTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998643 44788899999999999998887664 3333344333344444444433
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.97 E-value=1.2e-08 Score=94.47 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=94.8
Q ss_pred ccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHh-cccCCCCCcchHHHHHHHHHH
Q 020441 166 PALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-NYSVTSGVLGTLYPLIMAALL 242 (326)
Q Consensus 166 ~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~l~ 242 (326)
+.+|. .+++++...+.++..+++++.|++.||+|||+ ++..+.++..+..+.... ...++ ++..++..++.
T Consensus 54 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~-~l~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~l~ 127 (438)
T 3o7q_A 54 QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA-GIITGLFLYALGAALFWPAAEIMN-----YTLFLVGLFII 127 (438)
T ss_dssp HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH-HHHHHHHHHHHHHHHHHhcccccc-----HHHHHHHHHHH
Confidence 34554 47899999999999999999999999999995 766676665544432211 23333 36677778999
Q ss_pred hhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441 243 GIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS 291 (326)
Q Consensus 243 G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~ 291 (326)
|++.+...+..++++.+.+|++ +..+++.++...++|..+++.+...+.
T Consensus 128 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 128 AAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976 466788999999999999999987664
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.80 E-value=7.5e-08 Score=89.36 Aligned_cols=117 Identities=9% Similarity=0.071 Sum_probs=92.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHh-cc-cCCCCCcchHHHHHHHHHHhhh
Q 020441 168 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-NY-SVTSGVLGTLYPLIMAALLGIG 245 (326)
Q Consensus 168 lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l-~~-~~~~~~~~~~~~~~~~~l~G~~ 245 (326)
++..+.+++..++.++..+++++.|+++||+|||+ ++..+.++..+..+...+ .. .++ ++..++..++.|++
T Consensus 59 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~-~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~l~G~~ 132 (451)
T 1pw4_A 59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV-FLPAGLILAAAVMLFMGFVPWATSS-----IAVMFVLLFLCGWF 132 (451)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHHHHCHHHHSS-----SSHHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH-HHHHHHHHHHHHHHHHHhhhhcccc-----HHHHHHHHHHHHHH
Confidence 33457889999999999999999999999999995 777776665554433222 00 233 25567778999999
Q ss_pred hHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441 246 DGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI 290 (326)
Q Consensus 246 d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~ 290 (326)
.+...+...+++.+.+|++ +..+++.++...++|..+++.+...+
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 133 QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999965 56788899999999999998888664
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.73 E-value=1.7e-07 Score=89.09 Aligned_cols=113 Identities=11% Similarity=0.050 Sum_probs=87.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhccCC-CChhhHHHHHHHHHHHHHHHHHhcccC-CCCCcchHHHHHHHHHHhhhhHH
Q 020441 171 SGVGGAMAVYGAFDAICSLAAGRLTTGL-PSITFIVSGGAIAQVVVFLWILINYSV-TSGVLGTLYPLIMAALLGIGDGV 248 (326)
Q Consensus 171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~-g~~~~i~~~g~i~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~G~~d~~ 248 (326)
.+.+++..++.++..+++++.|+++||+ |||+ ++..+.++..+..+.. ...+ + ++..++..++.|++.+.
T Consensus 54 ~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~-~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~l~g~~~~~ 125 (524)
T 2xut_A 54 AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN-TILWLSLIYCVGHAFL--AIFEHS-----VQGFYTGLFLIALGSGG 125 (524)
T ss_dssp TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-HHHHHHHHHHHHHHHH--HHTSSC-----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHH--HHhccc-----HHHHHHHHHHHHHhccc
Confidence 3788899999999999999999999999 9995 6666665555443322 2223 3 35567778889999999
Q ss_pred hhhhhHhhHHhhccCCc-h---hhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441 249 LNTQLSALLGILFKHDT-E---GAFAQLKVWQCASIAVVFFIGPYIS 291 (326)
Q Consensus 249 ~~~~~~~il~~~f~~~~-~---~~fa~~~~~~~~g~~i~~~i~~~~~ 291 (326)
..+...+++.+.+|+++ . ..++.++...++|..+++.+...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998763 3 2456688999999999998887653
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.71 E-value=1.6e-07 Score=85.23 Aligned_cols=118 Identities=18% Similarity=0.177 Sum_probs=92.3
Q ss_pred ccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHh
Q 020441 166 PALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG 243 (326)
Q Consensus 166 ~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G 243 (326)
+.+|. .+.++...++.+...+++++.|++.||+|||+ ++..+.+......+... ..++ ++..++..++.|
T Consensus 28 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~~--~~~~-----~~~l~~~~~l~g 99 (375)
T 2gfp_A 28 RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP-VILVGMSIFMLATLVAV--TTSS-----LTVLIAASAMQG 99 (375)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC-CCHHHHHHHHHHHHHHH--HHHH-----HHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-hHHHHHHHHHHHHHHHH--Hhcc-----HHHHHHHHHHHH
Confidence 34554 47889999999999999999999999999996 66666655554433222 2222 355677788999
Q ss_pred hhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441 244 IGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS 291 (326)
Q Consensus 244 ~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~ 291 (326)
++.+..++..++++.+.+|++ +..+++.++...++|..+++.+...+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999855 567889999999999999999887663
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.10 E-value=2.1e-05 Score=73.77 Aligned_cols=114 Identities=11% Similarity=-0.071 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCC--------C-----CcchHHHHHH
Q 020441 172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTS--------G-----VLGTLYPLIM 238 (326)
Q Consensus 172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~--------~-----~~~~~~~~~~ 238 (326)
..+++...+-++..+|++++|+++||+|||+ .+..+.++..+..+..- +.+.. . -......++.
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~-~l~~~~~l~~i~~i~~a--~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRD-SLKIAAVLFFISGVGSA--WPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHH--CTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHH--HHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 3456666777788999999999999999995 77666665554433211 11100 0 0013456777
Q ss_pred HHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhh
Q 020441 239 AALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGP 288 (326)
Q Consensus 239 ~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~ 288 (326)
-++.|++.+...+..+.+++|..|+++ ....+.++.....|..+++....
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~ 183 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNY 183 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcch
Confidence 899999999999999999999999774 55566788888888777777654
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.93 E-value=3.8e-06 Score=77.62 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=49.9
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHH
Q 020441 132 LLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGA 209 (326)
Q Consensus 132 ~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~ 209 (326)
.++||+...+....+......+.....++ .+.++.+|. .++|.+...+.++..+++++.|+++||+|||+ ++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~-~l~~~~ 80 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFP-IWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK-YLLWII 80 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHH-HHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC-HHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-HHHHHH
Confidence 56777766544332222222222222222 344444554 37899999999999999999999999999996 555554
Q ss_pred HH
Q 020441 210 IA 211 (326)
Q Consensus 210 i~ 211 (326)
..
T Consensus 81 ~~ 82 (417)
T 2cfq_A 81 TG 82 (417)
T ss_dssp HH
T ss_pred HH
Confidence 43
Done!