Query 020442
Match_columns 326
No_of_seqs 188 out of 535
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 03:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f5j_A Mortality factor 4-like 100.0 1.6E-46 5.6E-51 334.5 12.6 149 163-311 3-156 (181)
2 2y0n_A MALE-specific lethal 3 100.0 3.5E-46 1.2E-50 339.7 13.6 157 163-322 5-200 (211)
3 3oa6_A MALE-specific lethal 3 100.0 1.3E-29 4.5E-34 207.5 7.8 78 45-122 13-100 (110)
4 2f5k_A MORF-related gene 15 is 100.0 1.3E-28 4.4E-33 199.7 8.8 75 48-122 19-93 (102)
5 3m9q_A Protein MALE-specific l 99.9 7.7E-28 2.6E-32 194.6 8.7 71 51-121 19-99 (101)
6 3m9p_A MALE-specific lethal 3 99.9 2.1E-27 7.2E-32 194.3 7.8 72 51-122 19-100 (110)
7 2lrq_A Protein MRG15, NUA4 com 99.9 1.8E-28 6.1E-33 193.2 0.0 74 48-121 9-82 (85)
8 3e9g_A Chromatin modification- 99.9 3.1E-26 1.1E-30 191.0 7.9 74 51-124 7-118 (130)
9 2k3y_A Chromatin modification- 99.9 7.4E-26 2.5E-30 191.9 7.6 72 51-122 9-118 (136)
10 2lcc_A AT-rich interactive dom 99.9 2E-22 6.8E-27 155.6 7.0 63 51-113 5-71 (76)
11 2ro0_A Histone acetyltransfera 99.8 5.5E-21 1.9E-25 152.4 9.6 54 51-104 23-76 (92)
12 2rnz_A Histone acetyltransfera 99.8 2.5E-20 8.6E-25 148.8 6.4 54 51-104 25-78 (94)
13 2bud_A Males-absent on the fir 99.8 8E-20 2.7E-24 144.9 6.0 55 55-109 18-76 (92)
14 2eko_A Histone acetyltransfera 99.8 6.6E-20 2.3E-24 144.7 5.5 54 51-104 9-67 (87)
15 1wgs_A MYST histone acetyltran 99.8 4.8E-19 1.6E-23 150.2 9.2 55 51-105 12-69 (133)
16 2eqm_A PHD finger protein 20-l 99.4 3.1E-13 1E-17 106.9 7.7 64 43-108 11-77 (88)
17 3sd4_A PHD finger protein 20; 99.2 1.8E-11 6.2E-16 92.3 7.7 56 44-101 5-61 (69)
18 3h8z_A FragIle X mental retard 98.6 7.7E-08 2.6E-12 80.8 7.2 57 48-108 57-119 (128)
19 4a4f_A SurviVal of motor neuro 98.0 9.5E-06 3.2E-10 59.9 6.7 58 46-107 3-62 (64)
20 1mhn_A SurviVal motor neuron p 97.7 6.5E-05 2.2E-09 54.3 5.9 54 51-108 3-58 (59)
21 2equ_A PHD finger protein 20-l 97.6 0.00011 3.7E-09 56.0 6.0 53 50-108 8-61 (74)
22 3s6w_A Tudor domain-containing 97.5 0.00023 7.9E-09 50.4 6.4 50 52-105 2-53 (54)
23 1g5v_A SurviVal motor neuron p 97.5 0.00028 9.5E-09 55.4 7.1 53 51-107 10-64 (88)
24 1wjq_A KIAA1798 protein; MBT d 97.5 0.00019 6.6E-09 58.3 6.3 52 51-106 13-69 (107)
25 2m0o_A PHD finger protein 1; t 97.4 0.00037 1.3E-08 53.0 6.8 52 41-94 16-68 (79)
26 2xk0_A Polycomb protein PCL; t 97.4 0.00044 1.5E-08 51.5 7.0 52 48-106 12-64 (69)
27 3p8d_A Medulloblastoma antigen 97.3 0.00028 9.6E-09 52.7 5.1 51 51-107 6-57 (67)
28 2l8d_A Lamin-B receptor; DNA b 97.3 0.00042 1.5E-08 51.1 5.8 53 48-105 6-60 (66)
29 2dig_A Lamin-B receptor; tudor 97.2 0.00053 1.8E-08 50.7 5.6 52 48-104 9-62 (68)
30 2biv_A SCML2 protein, sex COMB 97.1 0.001 3.5E-08 61.3 7.3 56 46-105 166-226 (243)
31 4hcz_A PHD finger protein 1; p 96.9 0.0015 5E-08 47.2 5.3 50 51-105 3-53 (58)
32 3qii_A PHD finger protein 20; 96.9 0.0012 4E-08 51.5 4.9 51 51-107 21-72 (85)
33 2eqj_A Metal-response element- 96.9 0.0017 5.9E-08 48.1 5.5 40 51-92 13-53 (66)
34 3pnw_C Tudor domain-containing 96.8 0.0025 8.7E-08 48.5 6.6 54 51-108 17-72 (77)
35 2d9t_A Tudor domain-containing 96.8 0.0029 9.9E-08 48.2 6.3 53 51-107 9-63 (78)
36 2r58_A Polycomb protein SCM; M 96.7 0.0032 1.1E-07 58.6 7.6 55 48-106 140-199 (265)
37 2ldm_A Uncharacterized protein 95.5 0.00047 1.6E-08 53.3 0.0 50 51-106 6-56 (81)
38 3fdr_A Tudor and KH domain-con 96.2 0.015 5E-07 45.3 7.2 53 51-108 27-81 (94)
39 2e5p_A Protein PHF1, PHD finge 96.1 0.0082 2.8E-07 44.4 5.1 50 50-104 8-58 (68)
40 2e5q_A PHD finger protein 19; 96.0 0.0049 1.7E-07 45.0 3.5 49 51-104 7-56 (63)
41 2biv_A SCML2 protein, sex COMB 95.8 0.022 7.5E-07 52.3 7.6 54 49-106 60-118 (243)
42 1oz2_A Lethal(3)malignant brai 95.4 0.028 9.7E-07 53.8 7.3 53 50-106 147-204 (331)
43 2r58_A Polycomb protein SCM; M 95.4 0.043 1.5E-06 51.1 8.3 54 49-106 32-90 (265)
44 1oz2_A Lethal(3)malignant brai 95.3 0.031 1.1E-06 53.5 7.0 53 50-106 251-308 (331)
45 2l89_A PWWP domain-containing 95.2 0.053 1.8E-06 43.6 7.3 59 51-111 5-72 (108)
46 3fdt_A Chromobox protein homol 95.2 0.037 1.3E-06 39.8 5.5 38 66-103 3-41 (59)
47 3h6z_A Polycomb protein SFMBT; 95.1 0.034 1.2E-06 55.3 7.1 54 48-105 373-431 (447)
48 1ri0_A Hepatoma-derived growth 95.1 0.027 9.1E-07 45.6 5.1 58 49-108 17-78 (110)
49 3i91_A Chromobox protein homol 95.0 0.035 1.2E-06 39.1 4.9 38 67-104 4-42 (54)
50 1pfb_A Polycomb protein; chrom 94.9 0.037 1.3E-06 39.1 4.9 35 70-104 8-42 (55)
51 3h91_A Chromobox protein homol 94.9 0.042 1.4E-06 38.7 5.0 38 67-104 4-42 (54)
52 2diq_A Tudor and KH domain-con 94.8 0.028 9.6E-07 44.9 4.6 54 51-109 32-87 (110)
53 3lwe_A M-phase phosphoprotein 94.8 0.029 1E-06 40.7 4.1 38 66-103 4-42 (62)
54 1pdq_A Polycomb protein; methy 94.6 0.066 2.3E-06 40.2 5.9 41 64-104 18-59 (72)
55 3f2u_A Chromobox protein homol 94.5 0.056 1.9E-06 38.2 4.9 34 70-103 7-40 (55)
56 2k1b_A Chromobox protein homol 94.5 0.046 1.6E-06 41.2 4.7 40 65-104 20-60 (73)
57 3ut1_A Lethal(3)malignant brai 94.5 0.072 2.4E-06 50.9 7.1 52 50-105 246-302 (324)
58 3f70_A Lethal(3)malignant brai 94.4 0.077 2.6E-06 52.9 7.4 52 51-106 366-422 (456)
59 3mts_A Histone-lysine N-methyl 94.3 0.054 1.9E-06 39.7 4.6 35 70-104 5-39 (64)
60 2kvm_A Chromobox protein homol 94.3 0.063 2.1E-06 40.3 5.0 35 70-104 18-52 (74)
61 2d9u_A Chromobox protein homol 94.2 0.075 2.6E-06 39.9 5.3 40 66-105 10-50 (74)
62 1wjr_A KIAA1617 protein; MBT d 94.1 0.044 1.5E-06 45.5 4.3 52 51-106 11-69 (127)
63 3g7l_A Chromo domain-containin 94.1 0.081 2.8E-06 38.2 5.1 39 65-103 6-46 (61)
64 2dnv_A Chromobox protein homol 93.9 0.046 1.6E-06 39.9 3.6 36 70-105 15-50 (64)
65 1q3l_A Heterochromatin protein 93.8 0.08 2.8E-06 39.4 4.8 39 65-103 15-54 (69)
66 1ap0_A Modifier protein 1; chr 93.6 0.098 3.3E-06 39.1 5.0 38 66-103 13-51 (73)
67 4hae_A CDY-like 2, chromodomai 93.5 0.13 4.4E-06 39.4 5.6 41 64-104 21-63 (81)
68 1h3z_A Hypothetical 62.8 kDa p 93.4 0.11 3.8E-06 41.6 5.4 59 51-111 6-75 (109)
69 3ut1_A Lethal(3)malignant brai 93.3 0.26 8.7E-06 47.0 8.5 51 51-105 143-198 (324)
70 2hqx_A P100 CO-activator tudor 93.2 0.28 9.6E-06 44.0 8.4 53 51-108 65-118 (246)
71 3pfs_A Bromodomain and PHD fin 93.2 0.08 2.7E-06 45.6 4.4 62 48-110 33-123 (158)
72 2daq_A WHSC1L1 protein, isofor 93.1 0.069 2.4E-06 42.8 3.7 60 48-109 5-73 (110)
73 3feo_A MBT domain-containing p 93.1 0.17 5.8E-06 50.2 7.3 52 50-105 361-417 (437)
74 2rso_A Chromatin-associated pr 93.1 0.45 1.6E-05 37.1 8.3 34 70-103 35-71 (92)
75 4fu6_A PC4 and SFRS1-interacti 92.5 0.052 1.8E-06 46.1 2.3 56 51-108 22-81 (153)
76 2gfu_A DNA mismatch repair pro 92.2 0.22 7.5E-06 41.3 5.7 60 51-111 22-89 (134)
77 3ntk_A Maternal protein tudor; 91.5 0.27 9.1E-06 42.1 5.7 51 51-108 47-99 (169)
78 2rsn_A Chromo domain-containin 91.4 0.24 8.1E-06 37.3 4.6 40 65-104 20-61 (75)
79 2wac_A CG7008-PA; unknown func 91.4 0.54 1.8E-05 41.0 7.6 53 51-109 51-105 (218)
80 4b9w_A TDRD1, tudor domain-con 91.2 0.43 1.5E-05 41.8 6.8 53 51-108 65-119 (201)
81 2qqr_A JMJC domain-containing 90.7 0.75 2.6E-05 37.7 7.2 53 51-108 5-58 (118)
82 4b9x_A TDRD1, tudor domain-con 90.6 0.56 1.9E-05 41.8 7.1 54 51-109 65-120 (226)
83 3qby_A Hepatoma-derived growth 90.5 0.13 4.3E-06 40.4 2.3 55 51-107 5-63 (94)
84 2dnt_A Chromodomain protein, Y 89.5 0.24 8.3E-06 37.4 3.2 34 71-104 19-53 (78)
85 3llr_A DNA (cytosine-5)-methyl 89.4 0.26 9E-06 42.2 3.7 56 51-108 16-76 (154)
86 3bdl_A Staphylococcal nuclease 88.7 0.96 3.3E-05 45.8 7.9 53 51-108 411-464 (570)
87 1khc_A DNA cytosine-5 methyltr 88.7 0.56 1.9E-05 39.7 5.2 57 50-108 10-71 (147)
88 1g6z_A CLR4 protein; transfera 88.3 0.14 4.8E-06 37.9 1.1 35 70-104 13-49 (70)
89 3db3_A E3 ubiquitin-protein li 87.5 1.2 4E-05 38.3 6.4 41 51-91 10-68 (161)
90 3ask_A E3 ubiquitin-protein li 87.1 1.1 3.9E-05 40.6 6.5 40 51-90 2-50 (226)
91 3mea_A SAGA-associated factor 86.2 0.84 2.9E-05 40.0 5.0 42 48-90 113-156 (180)
92 2xdp_A Lysine-specific demethy 84.9 0.86 2.9E-05 37.6 4.1 52 51-107 6-58 (123)
93 3f70_A Lethal(3)malignant brai 82.8 2.1 7.1E-05 42.6 6.7 51 51-105 153-208 (456)
94 3mp6_A MBP, SGF29, maltose-bin 82.6 1.6 5.3E-05 43.2 5.8 44 44-90 450-495 (522)
95 3l42_A Peregrin; transcription 82.0 0.72 2.5E-05 38.4 2.6 59 51-110 5-92 (130)
96 3dlm_A Histone-lysine N-methyl 80.4 3.8 0.00013 36.8 6.8 51 45-101 152-202 (213)
97 2eqk_A Tudor domain-containing 79.6 4.3 0.00015 31.3 6.0 56 49-109 19-76 (85)
98 3dlm_A Histone-lysine N-methyl 73.7 5.9 0.0002 35.5 6.2 51 51-104 8-59 (213)
99 3h8z_A FragIle X mental retard 73.7 7.1 0.00024 32.2 6.2 47 54-106 4-52 (128)
100 3db3_A E3 ubiquitin-protein li 72.6 7.7 0.00026 33.2 6.3 40 51-90 92-139 (161)
101 1ssf_A Transformation related 70.9 2.9 9.9E-05 35.7 3.3 38 52-92 9-49 (156)
102 3nrw_A Phage integrase/site-sp 66.7 40 0.0014 25.6 11.8 89 195-307 4-93 (117)
103 1x3p_A Cpsrp43; chromo-2 domai 63.7 0.67 2.3E-05 32.6 -1.8 31 71-103 6-38 (54)
104 2fhd_A RAD9 homolog, DNA repai 63.2 11 0.00038 31.9 5.3 38 55-92 9-51 (153)
105 2b2y_A CHD-1, chromodomain-hel 61.1 1.9 6.7E-05 37.7 0.3 30 76-105 53-82 (187)
106 3mwy_W Chromo domain-containin 58.1 3.7 0.00013 42.9 1.9 27 78-104 69-95 (800)
107 2a7y_A Hypothetical protein RV 56.3 7.8 0.00027 29.7 2.9 47 51-99 5-54 (83)
108 2b2y_C CHD-1, chromodomain-hel 51.9 2.3 7.8E-05 34.7 -0.7 40 65-104 35-81 (115)
109 3ask_A E3 ubiquitin-protein li 51.2 29 0.00098 31.3 6.3 28 51-78 75-109 (226)
110 2epb_A Chromodomain-helicase-D 48.9 25 0.00085 25.5 4.6 24 80-103 32-55 (68)
111 2h1e_A Chromo domain protein 1 47.2 5.7 0.0002 34.4 1.0 26 80-105 46-71 (177)
112 2g3r_A Tumor suppressor P53-bi 41.8 46 0.0016 27.2 5.5 32 54-88 7-40 (123)
113 3mkb_B Hemoglobin subunit beta 38.0 23 0.00079 28.9 3.3 60 261-320 20-84 (136)
114 3feo_A MBT domain-containing p 37.3 1.3E+02 0.0043 29.5 9.0 52 51-105 254-313 (437)
115 1gcv_B Hemoglobin; oxygen stor 37.2 26 0.00088 28.4 3.4 60 261-320 20-84 (136)
116 3h6z_A Polycomb protein SFMBT; 37.1 57 0.002 32.1 6.5 50 51-106 156-210 (447)
117 3fk2_A Glucocorticoid receptor 36.4 2.2E+02 0.0076 25.0 11.9 72 169-242 67-140 (246)
118 3d1k_B Hemoglobin subunit beta 36.3 24 0.00083 28.7 3.2 60 261-320 20-94 (146)
119 2ee4_A RHO GTPase activating p 35.5 2.1E+02 0.007 24.3 9.7 137 169-311 26-201 (209)
120 1nz9_A Transcription antitermi 35.2 46 0.0016 22.8 4.0 31 51-81 4-35 (58)
121 2fmm_A Chromobox protein homol 34.0 63 0.0021 23.8 4.8 33 69-103 19-51 (74)
122 2xdp_A Lysine-specific demethy 29.8 89 0.003 25.4 5.5 33 53-88 66-99 (123)
123 1pbw_A Rhogap domain, phosphat 28.4 2.8E+02 0.0096 23.7 9.9 72 169-243 24-96 (216)
124 1lhs_A Myoglobin; oxygen stora 27.9 35 0.0012 27.8 2.8 59 262-320 22-95 (153)
125 2qqr_A JMJC domain-containing 27.9 1.2E+02 0.004 24.6 5.8 33 54-89 66-99 (118)
126 2kd1_A DNA integration/recombi 27.7 1.8E+02 0.0061 21.2 7.3 88 195-307 3-90 (118)
127 1spg_A Hemoglobin; carbon mono 26.9 47 0.0016 26.8 3.4 60 261-320 22-92 (144)
128 1out_A Hemoglobin I; heme, oxy 26.2 49 0.0017 26.7 3.4 59 262-320 23-91 (143)
129 1out_B Hemoglobin I; heme, oxy 25.2 42 0.0014 27.2 2.8 60 261-320 20-94 (146)
130 1x9f_A Globin IV, extracellula 25.2 47 0.0016 27.0 3.1 59 262-320 32-103 (151)
131 1cg5_B Protein (hemoglobin); o 24.8 38 0.0013 27.5 2.4 60 261-320 20-90 (141)
132 1xq5_A Hemoglobin alpha-1 chai 24.7 61 0.0021 26.0 3.7 59 262-320 23-91 (143)
133 1a6m_A Myoglobin; heme protein 24.4 48 0.0017 26.9 3.0 59 262-320 22-95 (151)
134 2kkp_A Phage integrase; SAM-li 24.4 2E+02 0.0069 20.7 8.9 89 195-307 4-92 (117)
135 3bom_B Hemoglobin subunit beta 24.2 54 0.0019 26.6 3.3 60 261-320 20-94 (147)
136 1jeb_A Hemoglobin zeta chain; 24.1 58 0.002 26.0 3.4 60 261-320 22-90 (142)
137 1p94_A Plasmid partition prote 23.3 1.3E+02 0.0043 22.3 4.9 39 162-211 33-71 (76)
138 1y71_A Kinase-associated prote 23.2 1.2E+02 0.0042 24.9 5.1 32 51-86 7-38 (130)
139 3d1k_A Hemoglobin subunit alph 23.2 72 0.0025 25.5 3.8 59 262-320 22-90 (142)
140 1q1f_A Neuroglobin; globin fol 23.1 63 0.0021 25.7 3.4 58 262-319 21-97 (151)
141 2nrl_A Myoglobin; transport pr 22.9 57 0.0019 26.3 3.1 59 262-320 19-91 (147)
142 1c7c_A Protein (deoxyhemoglobi 22.1 1.9E+02 0.0064 25.9 6.8 120 200-320 101-231 (283)
143 1wmu_A Hemoglobin D alpha chai 21.7 77 0.0026 25.2 3.7 59 262-320 22-89 (141)
144 2h1e_A Chromo domain protein 1 21.5 75 0.0025 27.2 3.7 27 77-103 137-163 (177)
145 1it2_A Hemoglobin; hagfish, de 21.3 54 0.0019 26.5 2.7 59 262-320 31-105 (146)
146 1x9f_D Globin C, hemoglobin ch 20.4 59 0.002 25.9 2.7 59 261-319 24-95 (140)
147 2jvv_A Transcription antitermi 20.1 1.4E+02 0.0047 25.1 5.1 38 50-87 126-164 (181)
No 1
>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B
Probab=100.00 E-value=1.6e-46 Score=334.55 Aligned_cols=149 Identities=40% Similarity=0.607 Sum_probs=134.5
Q ss_pred CceEEEeCChhHHHHHHhHhHHHhhcCceeeCCCCCCHHHHHHHHHHhhhccCCc--hhhhHHHHHHHHHHHHhhhcCcc
Q 020442 163 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGL--VADSTGEIVKGLRCYFDKALPIM 240 (326)
Q Consensus 163 ~~~i~i~lP~~Lk~iLvdD~e~I~k~~~L~~LP~~~tV~~IL~~Y~~~~~~~~~~--~~~~~~e~~~Gl~~YFn~~L~~~ 240 (326)
+++++|.||..||.+|||||++|+++++|++|||++||++||++|+++....... ....++|+++||++|||++||.+
T Consensus 3 ~~~i~i~iP~~Lk~~LvdDw~~Itk~~~L~~LP~~~~V~~IL~~Y~~~~~~~~~~~~~~~~~~Ev~~Gl~~YFd~~L~~~ 82 (181)
T 2f5j_A 3 RVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQ 82 (181)
T ss_dssp ---CCCCCCGGGHHHHHHHHHHHHTSCEEECSSCSSBHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHhCCCeeeCCCCCcHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3568999999999999999999999999999999999999999999998764422 23478999999999999999999
Q ss_pred cCChhhHhhHHHhhh--cCCCCCcccChHHHHHHhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhccc-hh
Q 020442 241 LLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKHCIGFLS-YV 311 (326)
Q Consensus 241 LLY~~ER~QY~~~l~--~~~~pS~iYG~~HLLRLfvkLP~ll~~t~~d~~si~~l~~~l~~fL~fL~~n~e-~f 311 (326)
|||++||+||.++++ ++.+||++||++|||||||+||+||+.++||+++++.|+.++.+||+||++|.+ ||
T Consensus 83 LLY~~ER~Qy~~ll~~~p~~~~S~iYGa~HLLRLfvkLPell~~t~~d~~s~~~L~~~l~~fl~fL~~n~~~~F 156 (181)
T 2f5j_A 83 LLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF 156 (181)
T ss_dssp SCCGGGHHHHHHHHHHSTTCCHHHHCBHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred cCcHHHHHHHHHHHHhCCCCCHHHHcCHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999986 457999999999999999999999999999999999999999999999999985 77
No 2
>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-46 Score=339.66 Aligned_cols=157 Identities=39% Similarity=0.568 Sum_probs=138.4
Q ss_pred CceEEEeCChhHHHHHHhHhHHHhhcCceeeCCCCCCHHHHHHHHHHhhhccC--------------------------C
Q 020442 163 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKD--------------------------G 216 (326)
Q Consensus 163 ~~~i~i~lP~~Lk~iLvdD~e~I~k~~~L~~LP~~~tV~~IL~~Y~~~~~~~~--------------------------~ 216 (326)
+++++|.||..||.+|||||++||++++|++|||++||++||++|+++..... .
T Consensus 5 ~~~v~i~iP~~Lk~~LvdDw~~Itk~~kLv~LPa~~~V~~IL~~Y~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 2y0n_A 5 ERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMPHANMNVHYIPAE 84 (211)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHHHTSCCEECSSCSSCHHHHHHHHHHHHHHHHHSCC---------------------CT
T ss_pred CceeEEeCCHHHHHHHHHHHHHHhcCCceEeCCCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccccchh
Confidence 35689999999999999999999999999999999999999999998865210 0
Q ss_pred chhhhHHHHHHHHHHHHhhhcCcccCChhhHhhHHHhhh------------cCCCCCcccChHHHHHHhhhhhhhhhcCC
Q 020442 217 LVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMA------------ADVSPSSVYGAEHLLRLFVKLPELLVHAK 284 (326)
Q Consensus 217 ~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~QY~~~l~------------~~~~pS~iYG~~HLLRLfvkLP~ll~~t~ 284 (326)
...+.++|+++||+.|||++||.+|||++||+||.+++. .+.+||++||++|||||||+||+||+.++
T Consensus 85 ~~~~~~~Ev~~GLr~YFd~~L~~~LLY~~ER~Qy~~~~~~~~~~~~~~~~~~~~~~S~iYGa~HLLRLfvkLPelL~~t~ 164 (211)
T 2y0n_A 85 KNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMS 164 (211)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHC--------CCSCCCCGGGTCCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHHhhcccCCcccccCCCCHHHHcCHHHHHHHHHHhHHHHhcCC
Confidence 113468999999999999999999999999999999984 24689999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhccc-hhhhhhhhhhhhc
Q 020442 285 IEEETLTLLQHKLVDLLKHCIGFLS-YVPKLLLSFGRKL 322 (326)
Q Consensus 285 ~d~~si~~l~~~l~~fL~fL~~n~e-~f~~~~~~~~~~~ 322 (326)
|++++++.|+.++++||+||++|.+ || +.+.|...
T Consensus 165 ~d~~s~~~L~~~l~~fl~fL~~n~~~~F---~~~~Y~~~ 200 (211)
T 2y0n_A 165 FSEKNLKALLKHFDLFLRFLAEYHDDFF---PESAYVAA 200 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTHHHHC---CGGGEECC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhC---ChhccCCC
Confidence 9999999999999999999999887 77 45666544
No 3
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=99.96 E-value=1.3e-29 Score=207.47 Aligned_cols=78 Identities=29% Similarity=0.594 Sum_probs=66.5
Q ss_pred CCCCCCCcCCCCEEEEEe-----CCeeeeeEEEEEEeeCC-----eeEEEEEEcCCCCCcceeeccccccccChHhhhcc
Q 020442 45 PTPASCPYQVNEKVLAFF-----QSHVYEAKVIQVQYRLK-----EWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQ 114 (326)
Q Consensus 45 ~~~~~~~f~vge~vl~~~-----~~~~YeAkIl~~~~~~~-----~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en~~~q 114 (326)
..++.+.|++||+||||| |+++|+|||++|....+ .+.|+|||+|||++|||||+++||+++|+||+++|
T Consensus 13 ~~~~k~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drllk~neeN~~~q 92 (110)
T 3oa6_A 13 SEGMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQ 92 (110)
T ss_dssp -----CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEECCHHHHHHH
T ss_pred CCCCCcccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhhhcCCHHHHHHH
Confidence 344566799999999999 67999999999986432 47999999999999999999999999999999999
Q ss_pred chhhhhhh
Q 020442 115 PVFTKKRD 122 (326)
Q Consensus 115 k~L~~~~~ 122 (326)
++|.+++.
T Consensus 93 k~L~~~~~ 100 (110)
T 3oa6_A 93 RKLARKAV 100 (110)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987664
No 4
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=99.95 E-value=1.3e-28 Score=199.74 Aligned_cols=75 Identities=36% Similarity=0.688 Sum_probs=70.8
Q ss_pred CCCCcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccChHhhhccchhhhhhh
Q 020442 48 ASCPYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTKKRD 122 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en~~~qk~L~~~~~ 122 (326)
|...|.+||+|+|++++.+|+|+|++++..++..+|||||.|||+||||||+++||+++|++|+++|++|.++++
T Consensus 19 ~~~~f~vGekVl~~~~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR~DEWV~~~Rl~k~t~en~~~q~~L~~~~~ 93 (102)
T 2f5k_A 19 PKPKFQEGERVLCFHGPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDTNLQKQRELQKANQ 93 (102)
T ss_dssp CSCSCCTTCEEEEESSSSEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEEESSHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCEEEEEECCEEEEEEEEEEEEcCCCcEEEEEeCCcCCCceeeccHhhcccCCHHHHHHHHHHHHHHH
Confidence 444699999999999999999999999999899999999999999999999999999999999999999988775
No 5
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=99.94 E-value=7.7e-28 Score=194.64 Aligned_cols=71 Identities=32% Similarity=0.569 Sum_probs=66.2
Q ss_pred CcCCCCEEEEEe-----CCeeeeeEEEEEEee-----CCeeEEEEEEcCCCCCcceeeccccccccChHhhhccchhhhh
Q 020442 51 PYQVNEKVLAFF-----QSHVYEAKVIQVQYR-----LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTKK 120 (326)
Q Consensus 51 ~f~vge~vl~~~-----~~~~YeAkIl~~~~~-----~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en~~~qk~L~~~ 120 (326)
.|++||+|+||| ++++|+|||++|... .+.+.|+|||.|||+||||||+++||+|+|++|+++|++|.++
T Consensus 19 ~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRilk~~eeN~~~q~~L~~~ 98 (101)
T 3m9q_A 19 LFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLLKDTEENRQLQRELAEA 98 (101)
T ss_dssp CCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGEEECCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHcccCCHHHHHHHHHHHHH
Confidence 599999999999 589999999999985 4578999999999999999999999999999999999999876
Q ss_pred h
Q 020442 121 R 121 (326)
Q Consensus 121 ~ 121 (326)
+
T Consensus 99 ~ 99 (101)
T 3m9q_A 99 A 99 (101)
T ss_dssp H
T ss_pred c
Confidence 5
No 6
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=99.94 E-value=2.1e-27 Score=194.27 Aligned_cols=72 Identities=32% Similarity=0.659 Sum_probs=66.7
Q ss_pred CcCCCCEEEEEeCC-----eeeeeEEEEEEeeCC-----eeEEEEEEcCCCCCcceeeccccccccChHhhhccchhhhh
Q 020442 51 PYQVNEKVLAFFQS-----HVYEAKVIQVQYRLK-----EWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTKK 120 (326)
Q Consensus 51 ~f~vge~vl~~~~~-----~~YeAkIl~~~~~~~-----~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en~~~qk~L~~~ 120 (326)
.|.+||+|+|+|++ ++|+|||++|+..++ .+.|+|||.|||+||||||+++||+++|++|+++|++|.++
T Consensus 19 ~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~GWn~~wDEWV~e~rllk~~eeN~~~q~~L~~~ 98 (110)
T 3m9p_A 19 KFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKLARK 98 (110)
T ss_dssp CSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEECCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEECCCCcchhhccCHhhhhcCCHHHHHHHHHHHHH
Confidence 59999999999996 999999999998642 48999999999999999999999999999999999999887
Q ss_pred hh
Q 020442 121 RD 122 (326)
Q Consensus 121 ~~ 122 (326)
+.
T Consensus 99 a~ 100 (110)
T 3m9p_A 99 AV 100 (110)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 7
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=99.89 E-value=1.8e-28 Score=193.21 Aligned_cols=74 Identities=32% Similarity=0.667 Sum_probs=69.3
Q ss_pred CCCCcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccChHhhhccchhhhhh
Q 020442 48 ASCPYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTKKR 121 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en~~~qk~L~~~~ 121 (326)
|...|.+||+|+|+|++.+|+|+|++++..++..+|||||.|||+||||||+++||+|+|++|+++|++|.+++
T Consensus 9 ~~~~~~~Gekv~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~GwNkR~DEWV~~~Rl~k~t~en~~~q~~l~~~~ 82 (85)
T 2lrq_A 9 ANTLFVDGERVLCFHGPLIYEAKVLKTKPDATPVEYYIHYAGWSKNWDEWVPENRVLKYNDDNVKRRQELARQC 82 (85)
Confidence 33469999999999999999999999998888899999999999999999999999999999999999998765
No 8
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=99.93 E-value=3.1e-26 Score=191.04 Aligned_cols=74 Identities=31% Similarity=0.618 Sum_probs=66.0
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeC--------------------------------------CeeEEEEEEcCCCC
Q 020442 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRL--------------------------------------KEWTFRVHYLGWNK 92 (326)
Q Consensus 51 ~f~vge~vl~~~~~~~YeAkIl~~~~~~--------------------------------------~~~~Y~VHY~GWn~ 92 (326)
.|++||+|+|||+|.+|+|||++|.... +.++|+|||+|||+
T Consensus 7 ~f~~gE~VlcfHg~~~YeAKIl~i~d~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~Y~VHY~GWn~ 86 (130)
T 3e9g_A 7 EFALGGRCLAFHGPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKCFFIHYQGWKS 86 (130)
T ss_dssp CCCTTCEEEEEETTEEEEEEEEEEEETTTTEEEECC--------------CCBCCCTTCCCCTTTTTSCEEEEEETTSCG
T ss_pred cccCCCEEEEEeCCcceeeEEEEeeCCCcceeecccccccccccccccccccccccccccCchhhccCceEEEEeCCCCC
Confidence 5999999999999999999999995311 23589999999999
Q ss_pred CcceeeccccccccChHhhhccchhhhhhhhh
Q 020442 93 SWDEWVGVHRLMKDTEANRHRQPVFTKKRDED 124 (326)
Q Consensus 93 r~DEWV~~~rl~k~t~en~~~qk~L~~~~~~~ 124 (326)
+|||||+++||+|+|++|+++|++|.++++..
T Consensus 87 ~WDEWV~e~rvlk~~eeN~~lqk~L~~~a~~~ 118 (130)
T 3e9g_A 87 SWDEWVGYDRIRAYNEENIAMKKRLANEAKEA 118 (130)
T ss_dssp GGCEEEETTTEECSSHHHHHHHHHHHHHHHHH
T ss_pred ChhhccCHhhhhccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877543
No 9
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.4e-26 Score=191.85 Aligned_cols=72 Identities=32% Similarity=0.645 Sum_probs=64.6
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEe------eC-----------------------C---------eeEEEEEEcCCCC
Q 020442 51 PYQVNEKVLAFFQSHVYEAKVIQVQY------RL-----------------------K---------EWTFRVHYLGWNK 92 (326)
Q Consensus 51 ~f~vge~vl~~~~~~~YeAkIl~~~~------~~-----------------------~---------~~~Y~VHY~GWn~ 92 (326)
.|++|++|||||++++|+||||++.. .+ + +.+|||||+|||+
T Consensus 9 ~f~~gekvl~~hg~llYeAKVl~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~Y~VHY~GWn~ 88 (136)
T 2k3y_A 9 EFALGGRVLAFHGPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKSFFIHYQGWKS 88 (136)
T ss_dssp SCCTTSEEEEECSSCEEEEEEEEEEETTTTEEEECSSCCCTTCSCCCSSBCCCCSCSSCCCCHHHHTSCEEEECCTTSCG
T ss_pred ccCCCCEEEEEECCeeEEEEEEEEEeccccccccccccccccccccccccccccccccccCcccccccceEEEEeCCcCC
Confidence 59999999999999999999999985 11 1 1299999999999
Q ss_pred CcceeeccccccccChHhhhccchhhhhhh
Q 020442 93 SWDEWVGVHRLMKDTEANRHRQPVFTKKRD 122 (326)
Q Consensus 93 r~DEWV~~~rl~k~t~en~~~qk~L~~~~~ 122 (326)
||||||+++||+++|+||+++|++|..+++
T Consensus 89 rwDEWV~~dRil~~~eeN~~~qKeL~~kak 118 (136)
T 2k3y_A 89 SWDEWVGYDRIRAYNEENIAMKKRLANEAG 118 (136)
T ss_dssp GGCEEEETTTEEESCHHHHHHHHHHHHHSC
T ss_pred cceeeecHhhhhhCCHhHhHHHHHHHHHHH
Confidence 999999999999999999999999987663
No 10
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=99.86 E-value=2e-22 Score=155.58 Aligned_cols=63 Identities=29% Similarity=0.549 Sum_probs=59.5
Q ss_pred CcCCCCEEEEEeC----CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccChHhhhc
Q 020442 51 PYQVNEKVLAFFQ----SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHR 113 (326)
Q Consensus 51 ~f~vge~vl~~~~----~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en~~~ 113 (326)
.|.+|++|+|+++ +.+|+|+|++++..++...|||||.|||+||||||+++||++++++|+..
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr~DEWV~~~ri~~~~~~~~~~ 71 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDKGLEH 71 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSCCSSCEEEEGGGEECSSCSSCCC
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcCCCceEecChhhccccccchhhh
Confidence 5999999999997 69999999999999999999999999999999999999999999999864
No 11
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.5e-21 Score=152.45 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=52.0
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 51 ~f~vge~vl~~~~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
.|.+|++|+|++++.+|+|+|++++..++...|||||.|||+||||||+.+||.
T Consensus 23 ~~~vG~kv~v~~~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlDEWV~~~rl~ 76 (92)
T 2ro0_A 23 DIIIKCQCWVQKNDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN 76 (92)
T ss_dssp SCCTTCEEEEEETTEEEEEEEEEEECSSSSCEEEEEETTSCTTSCEEEEGGGEE
T ss_pred cccCCCEEEEEECCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHhHcc
Confidence 599999999999999999999999998889999999999999999999999994
No 12
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.5e-20 Score=148.83 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=51.9
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 51 ~f~vge~vl~~~~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
.|.+|++|+|++++.+|+|+|++++..++...|||||.|||+||||||+.+||.
T Consensus 25 ~~~vG~kv~v~~~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkRlDEWV~~~RI~ 78 (94)
T 2rnz_A 25 DIIIKCQCWVQKNDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN 78 (94)
T ss_dssp GCCTTEEEEEECSSCEEEEEEEEEECSSSSCEEEEECTTSCSTTCEEEETTTBC
T ss_pred cccCCCEEEEEECCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHHHcc
Confidence 489999999999999999999999998899999999999999999999999994
No 13
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=99.79 E-value=8e-20 Score=144.93 Aligned_cols=55 Identities=25% Similarity=0.459 Sum_probs=50.5
Q ss_pred CCEEEEEe-CCeeeeeEEEEEEeeC---CeeEEEEEEcCCCCCcceeeccccccccChH
Q 020442 55 NEKVLAFF-QSHVYEAKVIQVQYRL---KEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (326)
Q Consensus 55 ge~vl~~~-~~~~YeAkIl~~~~~~---~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~e 109 (326)
|++|+|+| ++.+|+|+|++++... +..+|||||.|||+||||||+.+||.+.+++
T Consensus 18 ~e~vlc~~~dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL~~~~~~ 76 (92)
T 2bud_A 18 DKIYFIRREDGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRISDNADD 76 (92)
T ss_dssp TSCEEEECTTSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTEESCHHH
T ss_pred CCEEEEEeCCCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHhchhccc
Confidence 67999999 6899999999999865 5789999999999999999999999998765
No 14
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.6e-20 Score=144.71 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=51.1
Q ss_pred CcCCCCEEEEEe-----CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 51 PYQVNEKVLAFF-----QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 51 ~f~vge~vl~~~-----~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
.|.+|++|+|+| ++.+|+|+|++++..++..+|||||.|||+||||||+.+||.
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkRlDEWV~~~rl~ 67 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNRRLDEWVTHERLD 67 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCSCCCEEECTTTBC
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCcccccccCHhHcc
Confidence 599999999998 679999999999998888999999999999999999999995
No 15
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=99.78 E-value=4.8e-19 Score=150.24 Aligned_cols=55 Identities=35% Similarity=0.479 Sum_probs=50.8
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEee--CCeeEEEEEEcCCCCCcceeeccccccc
Q 020442 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYR--LKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (326)
Q Consensus 51 ~f~vge~vl~~~~-~~~YeAkIl~~~~~--~~~~~Y~VHY~GWn~r~DEWV~~~rl~k 105 (326)
.|.+|++|+|+|+ +.||+|+|++++.. .+...|||||.|||+||||||+++||..
T Consensus 12 ~~~vGe~v~~~~~d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~~ 69 (133)
T 1wgs_A 12 TVEIGETYLCRRPDSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLAL 69 (133)
T ss_dssp CCCTTSEEEEEETTTEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSCC
T ss_pred ccCCCCEEEEEeCCCCEEEEEEEEEEeccCCCceEEEEeccCcCCCceeecChhhccc
Confidence 5999999999997 79999999999974 4789999999999999999999999964
No 16
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=99.42 E-value=3.1e-13 Score=106.87 Aligned_cols=64 Identities=20% Similarity=0.472 Sum_probs=52.9
Q ss_pred CCCCCCCCCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--cccccCh
Q 020442 43 CPPTPASCPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKDTE 108 (326)
Q Consensus 43 ~~~~~~~~~f~vge~vl~~~~-~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k~t~ 108 (326)
.||..+...|++|++|.|.+. +.+|+|+|+.+.... ..|+|||.||+.+|||||+.+ +|++..-
T Consensus 11 ~~~~~~~~~F~vGmkLEA~D~~~~~~~a~i~~v~~~~--~~v~VHfdGW~~~yDeWv~~dS~~I~P~g~ 77 (88)
T 2eqm_A 11 KPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEE--GKMLVHFERWSHRYDEWIYWDSNRLRPLER 77 (88)
T ss_dssp SCCSCSSCCCCSSCEEEEECTTSCEEEEEEEEEETTT--TEEEEEESSSTTTEEEEEETTSCCEECCCC
T ss_pred CCCCCCcCcCCCCCEEEEEcCCCCeeEEEEEEEeccC--CEEEEEECCCCCcccEEeeCCCCcEecccc
Confidence 455556668999999988873 578999999887643 489999999999999999987 8988743
No 17
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=99.24 E-value=1.8e-11 Score=92.31 Aligned_cols=56 Identities=25% Similarity=0.556 Sum_probs=45.9
Q ss_pred CCCCCCCCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc
Q 020442 44 PPTPASCPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH 101 (326)
Q Consensus 44 ~~~~~~~~f~vge~vl~~~~-~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ 101 (326)
||.+++..|++|.++.|.+. +.+|.|+|++|... +..++|||.||+.+||+|++.+
T Consensus 5 p~~~~~~~F~vGmkLEa~d~~~p~~~AtV~~v~~~--~~~~~VhfdGw~~~~D~W~~~d 61 (69)
T 3sd4_A 5 PPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYE--EGKVLIHFKRWNHRYDEWFCWD 61 (69)
T ss_dssp CCCCTTCCCSTTCEEEEECTTSCEEEEEEEEEETT--TTEEEEEETTSCGGGCEEEETT
T ss_pred CCCCCCCCcCCCCEEEEEECCCCccccEEEEEecc--CCEEEEEeCCCCCCCCEEEcCC
Confidence 45556667999999988763 34599999999643 3478999999999999999975
No 18
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=98.60 E-value=7.7e-08 Score=80.76 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=44.0
Q ss_pred CCCCcCCCCEEEEEeCC------eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccCh
Q 020442 48 ASCPYQVNEKVLAFFQS------HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~~------~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
....|.+|++|-|++.. -||.|+|++++. ..|+|+|.||...|+|||+.+||+..+.
T Consensus 57 ~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg----~f~~V~y~~~~~~~~EiV~~~rlR~~n~ 119 (128)
T 3h8z_A 57 YNKEITEGDEVEVYSRANEQEPCGWWLARVRMMKG----DFYVIEYAACDATYNEIVTLERLRPVNP 119 (128)
T ss_dssp ---CCCTTCEEEEEECC---CCCEEEEEEEEEEET----TEEEEEETTC----CEEECGGGEEECCC
T ss_pred cccCCCCCCEEEEEecCCCCCcCccEEEEEEEeeC----CEEEEEEcCCCCCcceEEehhheEeCCC
Confidence 33579999999999852 599999999983 4999999999999999999999987643
No 19
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=98.05 E-value=9.5e-06 Score=59.85 Aligned_cols=58 Identities=19% Similarity=0.344 Sum_probs=47.2
Q ss_pred CCCCCCcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccC
Q 020442 46 TPASCPYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (326)
Q Consensus 46 ~~~~~~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t 107 (326)
.+|+..+++|+.|+|.+ .|.||.|+|+++...+ ..|.|+|.+|..+ |.|+.++|...+
T Consensus 3 ~~~~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~--~~~~V~fvdYGn~--e~V~~~~Lrpl~ 62 (64)
T 4a4f_A 3 TQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEEN--GTAAITFAGYGNA--EVTPLLNLKPVE 62 (64)
T ss_dssp SCCSSCCCTTCEEEEECTTTSSEEEEEEEEEETTT--TEEEEEETTTTEE--EEEEGGGEECCS
T ss_pred CCcCCCCCCCCEEEEEECCCCCEEEEEEEEEcCCC--CEEEEEEEecCCE--EEEeHHHcEeCC
Confidence 44666799999999997 4799999999998533 3699999999764 889998887654
No 20
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=97.69 E-value=6.5e-05 Score=54.34 Aligned_cols=54 Identities=20% Similarity=0.401 Sum_probs=44.4
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccCh
Q 020442 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 51 ~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
.|++|+.|++.+ .|.||.|+|+++... ...|.|+|.+|..+ |-|+.++|+..+.
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~--~~~~~V~f~DYGn~--e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFK--RETCVVVYTGYGNR--EEQNLSDLLSPIC 58 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETT--TTEEEEEETTTTEE--EEEEGGGCBCTTC
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCC--CCEEEEEEEcCCCE--EEEcHHHeeCCCC
Confidence 488999999997 479999999999542 24799999999874 8899888877643
No 21
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.59 E-value=0.00011 Score=55.98 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=44.8
Q ss_pred CCcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccCh
Q 020442 50 CPYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 50 ~~f~vge~vl~~~-~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
..|++|+.|++.| +|.||+|+|.++... ..|.|.|.++|. |-|+.++|....+
T Consensus 8 ~~~kvGd~clA~wsDg~~Y~A~I~~v~~~---~~~~V~f~Dyn~---e~v~~~~lrplp~ 61 (74)
T 2equ_A 8 FDFKAGEEVLARWTDCRYYPAKIEAINKE---GTFTVQFYDGVI---RCLKRMHIKAMPE 61 (74)
T ss_dssp CCCCTTCEEEEECSSSSEEEEEEEEESTT---SSEEEEETTSCE---EEECGGGEECCCG
T ss_pred CCCCCCCEEEEECCCCCEEEEEEEEECCC---CEEEEEEecCCe---EEecHHHCeeCCh
Confidence 3699999999998 579999999999643 379999999866 9999999887654
No 22
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=97.51 E-value=0.00023 Score=50.37 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=39.9
Q ss_pred cCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccc
Q 020442 52 YQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (326)
Q Consensus 52 f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k 105 (326)
|++|+.|+|.+ .|.||.|+|+++.... ..|.|+|.++..+ |-|+.++|..
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~--~~~~V~fvDYGn~--e~v~~~~lrp 53 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSSG--MTAVVKFIDYGNY--EEVLLSNIKP 53 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--CC--SEEEEEETTTCCE--EEEEGGGEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCCC--CEEEEEEEccCCe--EEEeHHHEEE
Confidence 78999999998 5799999999986532 4789999999875 7788777653
No 23
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.47 E-value=0.00028 Score=55.39 Aligned_cols=53 Identities=21% Similarity=0.411 Sum_probs=44.9
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccC
Q 020442 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (326)
Q Consensus 51 ~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t 107 (326)
.+++|+.|++.| .|.||.|+|.++.... ..|.|.|.+|..+ |-|+.++|+...
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~--~~~~V~fiDYGN~--E~V~~~~Lrp~~ 64 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKR--ETCVVVYTGYGNR--EEQNLSDLLSPI 64 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTT--TEEEEEETTTCCE--EEEEGGGCBCCC
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCC--CEEEEEEecCCCE--EEEcHHHcccCC
Confidence 588999999998 5799999999996532 3799999999875 889999998764
No 24
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=97.47 E-value=0.00019 Score=58.28 Aligned_cols=52 Identities=21% Similarity=0.448 Sum_probs=44.3
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--ccccc
Q 020442 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (326)
Q Consensus 51 ~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k~ 106 (326)
.|++|-++.+.+. ..++.|.|.+|. +...+|||.||..++|.|+..+ .|+..
T Consensus 13 ~F~~GMKLEAvD~~~p~~icvATV~~v~----g~rl~v~fDGw~~~~D~W~~~dSpdIhPV 69 (107)
T 1wjq_A 13 GFQKKMKLEVVDKRNPMFIRVATVADTD----DHRVKVHFDGWNNCYDYWIDADSPDIHPV 69 (107)
T ss_dssp SCCSSCEEEEECTTCTTCEEEEEEEEEC----SSCEEEECSSSCGGGCEEECTTCSSCEET
T ss_pred cCCCCCEEEEEcCCCCCcEEeEEEEEec----CCEEEEEeCCCCCcCCEEEECCCCCcccC
Confidence 6999999999985 379999999994 3478999999999999999875 66654
No 25
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=97.42 E-value=0.00037 Score=52.98 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=41.3
Q ss_pred CCCCCCCCCCCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCc
Q 020442 41 CPCPPTPASCPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSW 94 (326)
Q Consensus 41 ~~~~~~~~~~~f~vge~vl~~~~-~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~ 94 (326)
+|+|...|-..|.+||-|||.|. |..|.++|++|.... ..|+|+|..=.+.|
T Consensus 16 ~p~~~~~p~~~f~eGeDVLarwsDGlfYLGTI~kV~~~~--e~ClV~F~D~S~~W 68 (79)
T 2m0o_A 16 SPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAR--EVCLVQFEDDSQFL 68 (79)
T ss_dssp SCCCCCSCCCCCCTTCEEEBCCTTSCCCEEEEEEEETTT--TEEEEEETTSCEEE
T ss_pred CCCCccCCcceeccCCEEEEEecCCCEEeEEEEEeccCC--CEEEEEEcCCCeEE
Confidence 45555566678999999999985 799999999998653 47999998766643
No 26
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=97.41 E-value=0.00044 Score=51.50 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=40.5
Q ss_pred CCCCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeecccccccc
Q 020442 48 ASCPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~-~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~ 106 (326)
|...|.+||-|||.|. |..|.+.|++.. ...++|+|..=.. -||...+|.+.
T Consensus 12 pa~~~~~geDVL~rw~DG~fYLGtIVd~~----~~~ClV~FeD~S~---~Wv~~kdi~kl 64 (69)
T 2xk0_A 12 PAVTYALQEDVFIKCNDGRFYLGTIIDQT----SDQYLIRFDDQSE---QWCEPDKLRKL 64 (69)
T ss_dssp CCCCCCTTCEEEEECTTSCEEEEEEEEEC----SSCEEEEETTCCE---EEECTTTEECS
T ss_pred cccccccCCeEEEEecCCCEEEEEEEecC----CceEEEEecCCcc---eeeeHHHHHhh
Confidence 3457999999999995 799999996543 3489999988776 56666666654
No 27
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=97.31 E-value=0.00028 Score=52.69 Aligned_cols=51 Identities=27% Similarity=0.344 Sum_probs=39.5
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccC
Q 020442 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (326)
Q Consensus 51 ~f~vge~vl~~~~-~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t 107 (326)
.|++||+|+|.|+ +.+|+|+|.+|... ..|.|.|.+ +. -|-|....|.+.+
T Consensus 6 ~~~vGd~vmArW~D~~yYpA~I~si~~~---~~Y~V~F~d-G~--~etvk~~~ikp~~ 57 (67)
T 3p8d_A 6 EFQINEQVLACWSDCRFYPAKVTAVNKD---GTYTVKFYD-GV--VQTVKHIHVKAFS 57 (67)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECTT---SEEEEEETT-SC--EEEEEGGGEEECC
T ss_pred ccccCCEEEEEcCCCCEeeEEEEEECCC---CeEEEEEeC-Cc--eEEEeHHHcccCC
Confidence 4999999999996 48999999999765 369999988 32 3666666665543
No 28
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.30 E-value=0.00042 Score=51.07 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=40.6
Q ss_pred CCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccc
Q 020442 48 ASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~~--~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k 105 (326)
|...|++||.|++.|.| +.|+|+|+++. ...+.|.|-|.. . -+|=+.+..|.+
T Consensus 6 p~~~~~vgd~VmaRW~Gd~~yYparI~Si~--s~~~~Y~V~fKd-g--T~e~L~~kDIkp 60 (66)
T 2l8d_A 6 PNRKYADGEVVMGRWPGSVLYYEVQVTSYD--DASHLYTVKYKD-G--TELALKESDIRL 60 (66)
T ss_dssp SSSSSCSSCEEEEECTTSSCEEEEEEEEEE--TTTTEEEEEETT-S--CEEEEEGGGEEC
T ss_pred CceEeecCCEEEEEcCCCccceEEEEEEec--cCCceEEEEecC-C--CEEeechhcccc
Confidence 33479999999999965 79999999998 456799999987 3 345555555543
No 29
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.23 E-value=0.00053 Score=50.73 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=39.3
Q ss_pred CCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 48 ASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~~--~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
|...|++||.|++.|.| ..|+|+|+++. ...+.|.|-|.. . -+|=+.+..|.
T Consensus 9 p~~~f~vgd~VmaRW~Gd~~yYparItSit--s~~~~Y~VkfKd-g--T~e~L~~kDIK 62 (68)
T 2dig_A 9 PSRKFADGEVVRGRWPGSSLYYEVEILSHD--STSQLYTVKYKD-G--TELELKENDIK 62 (68)
T ss_dssp CCCSSCSSCEEEEECTTTCCEEEEEEEEEE--TTTTEEEEECTT-S--CEEEEETTTEE
T ss_pred CceEeecCCEEEEEccCCccceEEEEEEec--cCCceEEEEecC-C--CEEEechhccc
Confidence 34479999999999975 89999999998 456799999976 2 23444444443
No 30
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=97.07 E-value=0.001 Score=61.26 Aligned_cols=56 Identities=18% Similarity=0.346 Sum_probs=46.0
Q ss_pred CCCCCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--cccc
Q 020442 46 TPASCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (326)
Q Consensus 46 ~~~~~~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k 105 (326)
.++...|++|-++.+.+. .+++.|.|.+|.. ..++|||.||..++|.|+..+ +|+.
T Consensus 166 ~~~~~~F~~GmKLEavD~~~p~~icvATV~~v~g----~rl~v~fDgw~~~~D~W~~~dSp~I~P 226 (243)
T 2biv_A 166 KPPLNNFKVGMKLEAIDKKNPYLICPATIGDVKG----DEVHITFDGWSGAFDYWCKYDSRDIFP 226 (243)
T ss_dssp CCSSCCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEEC
T ss_pred CCccccccCCCEEEEEccCCCCeEEEEEEEEecC----CEEEEEECCCCCcCCEEEeCCCCCeec
Confidence 334457999999999975 4899999999973 368999999999999999975 5554
No 31
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=96.91 E-value=0.0015 Score=47.18 Aligned_cols=50 Identities=14% Similarity=0.054 Sum_probs=39.1
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccc
Q 020442 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (326)
Q Consensus 51 ~f~vge~vl~~~~-~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k 105 (326)
.|.+||-|||.|. |..|.|+|++|... ...|+|+|..=.+ -||...+|.+
T Consensus 3 ~f~~GedVLarwsDG~fYlGtI~~V~~~--~~~clV~F~D~s~---~W~~~kdi~~ 53 (58)
T 4hcz_A 3 RLWEGQDVLARWTDGLLYLGTIKKVDSA--REVCLVQFEDDSQ---FLVLWKDISP 53 (58)
T ss_dssp SCCTTCEEEEECTTSCEEEEEEEEEETT--TTEEEEEETTSCE---EEEEGGGEEE
T ss_pred ccccCCEEEEEecCCCEEeEEEEEEecC--CCEEEEEEcCCCe---EEEEhHHccc
Confidence 5999999999985 79999999999765 3489999987776 4555555443
No 32
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=96.87 E-value=0.0012 Score=51.47 Aligned_cols=51 Identities=27% Similarity=0.344 Sum_probs=40.0
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccC
Q 020442 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (326)
Q Consensus 51 ~f~vge~vl~~~~-~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t 107 (326)
.|.+||+|+|.|+ +.+|+|+|.+|... ..|.|-|.+ +. -+-|....|.+.+
T Consensus 21 ~f~vGd~VlArW~D~~yYPAkI~sV~~~---~~YtV~F~D-G~--~etvk~~~IKp~~ 72 (85)
T 3qii_A 21 EFQINEQVLACWSDCRFYPAKVTAVNKD---GTYTVKFYD-GV--VQTVKHIHVKAFS 72 (85)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECTT---SEEEEEETT-SC--EEEEEGGGEEECC
T ss_pred ccccCCEEEEEeCCCCEeeEEEEEECCC---CeEEEEEeC-CC--eEEecHHHcccCC
Confidence 6999999999996 48999999999765 369999988 32 3666666665543
No 33
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=96.86 E-value=0.0017 Score=48.12 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=33.6
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCC
Q 020442 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNK 92 (326)
Q Consensus 51 ~f~vge~vl~~~~-~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~ 92 (326)
.|.+||-|+|.|. |+.|+|+|.+|....+ .|+|.|..=.+
T Consensus 13 ~f~vGddVLA~wtDGl~Y~gtI~~V~~~~g--tC~V~F~D~s~ 53 (66)
T 2eqj_A 13 KFEEGQDVLARWSDGLFYLGTIKKINILKQ--SCFIIFEDSSK 53 (66)
T ss_dssp CSCTTCEEEEECTTSCEEEEEEEEEETTTT--EEEEEETTTEE
T ss_pred cccCCCEEEEEEccCcEEEeEEEEEccCCc--EEEEEEccCCE
Confidence 6999999999985 7999999999987543 78999866555
No 34
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=96.85 E-value=0.0025 Score=48.53 Aligned_cols=54 Identities=15% Similarity=0.232 Sum_probs=43.5
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccCh
Q 020442 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 51 ~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
.+++|+.|+|.+ .|.||.|+|+++.... ..|.|.|.++.. -|-|+.++|+....
T Consensus 17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~--~~~~V~fvDYGN--~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 17 MWKPGDECFALYWEDNKFYRAEVEALHSSG--MTAVVKFIDYGN--YEEVLLSNIKPIQT 72 (77)
T ss_dssp TCCTTCEEEEEETTTTEEEEEEEEEECTTS--SEEEEEETTTCC--EEEEEGGGEECC--
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCC--CEEEEEEEcCCC--eEEEeHHHeEECCh
Confidence 588999999998 5899999999986432 478999999987 57888888877654
No 35
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=96.76 E-value=0.0029 Score=48.22 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=43.7
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccC
Q 020442 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (326)
Q Consensus 51 ~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t 107 (326)
.+.+|+.|++.+ .+.||.|+|+++... ...|.|.|.+|... |-|+.++|+...
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~--~~~~~V~fiDYGN~--e~V~~~~Lr~l~ 63 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSS--GMTAVVKFTDYGNY--EEVLLSNIKPVQ 63 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSS--SSEEEEEETTTTEE--EEEEGGGEEECC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCC--CCEEEEEEEcCCCe--EEEcHHHeEeCC
Confidence 578999999998 579999999998642 35799999999764 888888887664
No 36
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=96.72 E-value=0.0032 Score=58.65 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=45.8
Q ss_pred CCCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--ccccc
Q 020442 48 ASCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k~ 106 (326)
....|++|-++.+.+. .+++.|.|.+|.. ...+|||.||...+|.|+..+ +|+..
T Consensus 140 ~~~~F~vGMKLEavD~~np~~icvATV~~v~g----~rl~v~fDGw~~~~D~W~~~~Sp~I~Pv 199 (265)
T 2r58_A 140 EENLFKVGQKLEAVDKKNPQLICCATVDAIKD----DQIHVTFDGWRGAFDYWCNYRSRDIFPA 199 (265)
T ss_dssp SSCCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEECT
T ss_pred cccccccCcEEEeccCCCCCCEEEEEEEEecC----CEEEEEeCCCCCcCCEEEECCCCCeecC
Confidence 3446999999999874 5899999999963 379999999999999999975 66654
No 37
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.46 E-value=0.00047 Score=53.32 Aligned_cols=50 Identities=30% Similarity=0.340 Sum_probs=40.7
Q ss_pred CcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeecccccccc
Q 020442 51 PYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (326)
Q Consensus 51 ~f~vge~vl~~~-~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~ 106 (326)
.|++||.|++.| .+.||.|+|.++... ..|.|.|.+ . -.|-|+.++|.+.
T Consensus 6 ~~kvGd~clAkwsDg~wY~A~I~~v~~~---~~y~V~F~D-G--n~E~V~~s~LrPl 56 (81)
T 2ldm_A 6 EFQINEQVLASWSDSRFYPAKVTAVNKD---GTYTVKFYD-G--VVQTVKHIHVKAF 56 (81)
Confidence 589999999988 579999999999643 279999987 2 3488888888765
No 38
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=96.17 E-value=0.015 Score=45.25 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=43.8
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccCh
Q 020442 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 51 ~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
...+|+.|++.+ .+.||.|+|+++... ..+.|+|.+|.. -|.|+.++|....+
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~~---~~~~V~fvDyGn--~e~v~~~~lr~l~~ 81 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLEN---GNLDLYFVDFGD--NGDCPLKDLRALRS 81 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTT---SCEEEEETTTCC--EEEECGGGCEECCG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC---CeEEEEEEcCCC--eEEEEHHHhhhcCH
Confidence 477999999987 689999999999532 368899999987 48899998887654
No 39
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.12 E-value=0.0082 Score=44.43 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=37.9
Q ss_pred CCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 50 CPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 50 ~~f~vge~vl~~~~-~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
..|.+||-|||.|. |+.|.++|.+|... ...++|+|..=.+ -||....|.
T Consensus 8 ~~f~eGqdVLarWsDGlfYlGtV~kV~~~--~~~ClV~FeD~s~---~wv~~kdi~ 58 (68)
T 2e5p_A 8 PRLWEGQDVLARWTDGLLYLGTIKKVDSA--REVCLVQFEDDSQ---FLVLWKDIS 58 (68)
T ss_dssp CCCCTTCEEEEECTTSSEEEEEEEEEETT--TTEEEEEETTTEE---EEEETTTEE
T ss_pred cccccCCEEEEEecCCcEEEeEEEEEecC--CcEEEEEEccCCe---eeeeeeccc
Confidence 36999999999985 79999999999864 3479999976555 355444443
No 40
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.03 E-value=0.0049 Score=45.01 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=38.1
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 51 ~f~vge~vl~~~~-~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
.|.+|+-|||.|. |+.|.++|.+|... ...++|+|..=.+ -||....|.
T Consensus 7 ~f~eGqdVLarWsDGlfYlgtV~kV~~~--~~~ClV~FeD~s~---~wv~~kdi~ 56 (63)
T 2e5q_A 7 GLTEGQYVLCRWTDGLYYLGKIKRVSSS--KQSCLVTFEDNSK---YWVLWKDIQ 56 (63)
T ss_dssp CCCTTCEEEEECTTSCEEEEEECCCCST--TSEEEEEETTSCE---EEEEGGGEE
T ss_pred ceecCCEEEEEecCCCEEEEEEEEEecC--CCEEEEEEccCce---eEEEeeccc
Confidence 6999999999985 79999999998754 3479999977666 455444443
No 41
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=95.76 E-value=0.022 Score=52.33 Aligned_cols=54 Identities=22% Similarity=0.158 Sum_probs=44.9
Q ss_pred CCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--ccccc
Q 020442 49 SCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (326)
Q Consensus 49 ~~~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k~ 106 (326)
...|++|-++.+.+. ..++.|.|+++.. ...+|||.||..++|.|+..+ +|+..
T Consensus 60 ~~~f~vGmKLEa~D~~~~~~~~vATV~~v~g----~~l~l~~dG~d~~~DfW~~~~S~~I~Pv 118 (243)
T 2biv_A 60 VNDFKVGMKLEARDPRNATSVCIATVIGITG----ARLRLRLDGSDNRNDFWRLVDSPDIQPV 118 (243)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEEEEEEEET----TEEEEEETTSCSSSCEEEETTCTTEECT
T ss_pred cccccCCCEEEEecCCCCCcEEEEEEEEEeC----CEEEEEECCCCCCCCEeecCCCCccccC
Confidence 346999999999986 4789999999952 378999999999999999874 55554
No 42
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=95.43 E-value=0.028 Score=53.78 Aligned_cols=53 Identities=28% Similarity=0.398 Sum_probs=44.5
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--ccccc
Q 020442 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (326)
Q Consensus 50 ~~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k~ 106 (326)
..|++|-++.+.+. ..++.|.|.++... .++|||.||...+|.|+..+ .|+..
T Consensus 147 ~~F~vGmKLEavD~~np~~icvATV~~v~g~----r~~v~~Dg~~~~~D~w~~~~S~~I~PV 204 (331)
T 1oz2_A 147 LGFQVGMKLEAVDRMNPSLVCVASVTDVVDS----RFLVHFDNWDDTYDYWCDPSSPYIHPV 204 (331)
T ss_dssp TTCCTTCEEEEECTTSTTCEEEEEEEEEETT----EEEEEETTSCGGGCEEECTTCTTEECT
T ss_pred cccccccEEEeccCCCCCcEEEEEEEEeeCC----EEEEEeCCCCCccCEEEecCCCCccCC
Confidence 36999999999984 58999999998743 68999999999999999874 55543
No 43
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=95.42 E-value=0.043 Score=51.07 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=44.4
Q ss_pred CCCcCCCCEEEEEeCC---eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--ccccc
Q 020442 49 SCPYQVNEKVLAFFQS---HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (326)
Q Consensus 49 ~~~f~vge~vl~~~~~---~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k~ 106 (326)
...|++|-++.+.+.. .++.|.|++|... .++|||.||...+|-|+..+ .|+..
T Consensus 32 ~~~F~vGMKLEavDp~~~~~icvATV~~v~g~----~l~l~~DG~d~~~DfW~~~~S~~I~Pv 90 (265)
T 2r58_A 32 NNDFKIGMKLEALDPRNVTSTCIATVVGVLGS----RLRLRLDGSDSQNDFWRLVDSTEIHAI 90 (265)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEEEEEEEETT----EEEEEETTSCSSCCEEEETTCTTEECT
T ss_pred ccccccCCEeEEecCCCCCCEEEEEEEEEeCC----EEEEEeCCCCCcCCEeEeCCCCCeecc
Confidence 3469999999999863 6899999999743 88999999999999999864 45443
No 44
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=95.27 E-value=0.031 Score=53.50 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=44.4
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--ccccc
Q 020442 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (326)
Q Consensus 50 ~~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k~ 106 (326)
..|++|-++.+... .+++.|.|.+|.. ....|||.||...+|.|+..+ .|+..
T Consensus 251 ~~F~~gmKLEavD~~~p~~ic~AtV~~v~~----~~l~v~fDgw~~~~d~w~~~dS~~I~Pv 308 (331)
T 1oz2_A 251 HSFLVNMKLEAVDRRNPALIRVASVEDVED----HRIKIHFDGWSHGYDFWIDADHPDIHPA 308 (331)
T ss_dssp CCCCTTCEEEEECSSSTTCEEEEEEEEECS----SEEEEEETTBCGGGCEEEETTCTTEECT
T ss_pred cccccCceeEeecccCCCcEEeeEEEEEcC----CEEEEEeCCCCCcCCEEEECCCCCcccc
Confidence 36999999999975 4799999999963 359999999999999999875 56553
No 45
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=95.24 E-value=0.053 Score=43.60 Aligned_cols=59 Identities=8% Similarity=0.144 Sum_probs=47.1
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee--------CCeeEEEEEEcCCCCCcceeeccccccccChHhh
Q 020442 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR--------LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111 (326)
Q Consensus 51 ~f~vge~vl~~~~~-~~YeAkIl~~~~~--------~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en~ 111 (326)
.|.+|+.|++.-+| -++.|+|++-..- .+...|.|.|-|= ..| -||+..+|..++++..
T Consensus 5 ~~~~GdlVwaK~~gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~-~~~-aWv~~~~l~p~~~~~~ 72 (108)
T 2l89_A 5 RLNFGDRILVKAPGYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPD-FNF-AWVKRNSVKPLLDSEI 72 (108)
T ss_dssp CCCTTEEEEEECSSSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTT-TEE-EEECGGGEEECCHHHH
T ss_pred cccCCCEEEEEeCCcCCCceEecCcccCcHHHhhccCCCCeEEEEECCC-CCE-EEEchhhceeCCHHHH
Confidence 59999999999877 6999999986532 2356999999993 222 7999999999997654
No 46
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=95.16 E-value=0.037 Score=39.75 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=33.6
Q ss_pred eeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeccccc
Q 020442 66 VYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (326)
Q Consensus 66 ~YeA-kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl 103 (326)
-|+. +|++.+..+|...|+|+..||....+-|.|++.|
T Consensus 3 ey~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl 41 (59)
T 3fdt_A 3 EYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL 41 (59)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred eEEEEEEEEEEEeCCeEEEEEEEeCCCcccCCccchhHC
Confidence 3444 7888888889999999999999999999999988
No 47
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=95.14 E-value=0.034 Score=55.35 Aligned_cols=54 Identities=20% Similarity=0.397 Sum_probs=44.7
Q ss_pred CCCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--cccc
Q 020442 48 ASCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k 105 (326)
+...|++|-++.+... .++..|.|.+|.. ..-.|||.||...+|+|+..+ .|+.
T Consensus 373 ~~~~F~~gmkLEAvD~~np~~icvATV~~v~~----~~~~i~fDgw~~~~d~w~~~~S~dI~P 431 (447)
T 3h6z_A 373 PDHGFEVGMSLECADLMDPRLVCVATVARVVG----RLLKVHFDGWTDEYDQWLDCESADIYP 431 (447)
T ss_dssp CCCCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEECTTSCGGGCEEEETTCTTEEC
T ss_pred CCCccccCCEEEeecCCCCCcEEEEEEeEecC----CEEEEEeCCCCCcCCEEEecCCCCccc
Confidence 3346999999999874 5899999999984 378899999999999999865 4544
No 48
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=95.08 E-value=0.027 Score=45.60 Aligned_cols=58 Identities=16% Similarity=0.295 Sum_probs=46.8
Q ss_pred CCCcCCCCEEEEEeCC-eeeeeEEEEEEee---CCeeEEEEEEcCCCCCcceeeccccccccCh
Q 020442 49 SCPYQVNEKVLAFFQS-HVYEAKVIQVQYR---LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 49 ~~~f~vge~vl~~~~~-~~YeAkIl~~~~~---~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
+..|.+||.|++.-+| -|+.|+|+++... .....|.|.|-|-+.+. ||+.++|+.+.+
T Consensus 17 ~~~~~~GdlVwaK~kGyP~WPa~V~~~p~~~~k~~~~~~~V~FFGt~~~a--wv~~~~l~pf~~ 78 (110)
T 1ri0_A 17 QKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETA--FLGPKDLFPYEE 78 (110)
T ss_dssp SSSCCTTCEEEEEETTEEEEEEEEECCCSSSSCCCSSCEEEEETTTTEEE--EECSTTEECHHH
T ss_pred cCCCCCCCEEEEEeCCCCCCCEEEecccHhhcCCCCCEEEEEEecCCCEE--EECHHHccchhh
Confidence 3369999999999887 6999999975432 23468999999987655 999999999964
No 49
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=95.00 E-value=0.035 Score=39.05 Aligned_cols=38 Identities=16% Similarity=0.567 Sum_probs=33.7
Q ss_pred eee-EEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 67 YEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 67 YeA-kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
|++ +|++.+..+|...|+|+..||....+-|.|++.|.
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~ 42 (54)
T 3i91_A 4 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENIL 42 (54)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC
T ss_pred EEEEEEEEEEEeCCcEEEEEEEeCCCcccCcccchhHCC
Confidence 444 78888888899999999999999999999999886
No 50
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=94.95 E-value=0.037 Score=39.11 Aligned_cols=35 Identities=26% Similarity=0.640 Sum_probs=32.2
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 70 kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
+|++.+..+|...|+|.+.||....+-|.|++.|.
T Consensus 8 ~Il~~r~~~g~~~YlVKWkgy~~~~~TWEp~~~l~ 42 (55)
T 1pfb_A 8 KIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL 42 (55)
T ss_dssp EEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEEEEeCCeEEEEEEEcCCCCccCcEeEHHHCC
Confidence 78888888899999999999999999999998875
No 51
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=94.87 E-value=0.042 Score=38.71 Aligned_cols=38 Identities=16% Similarity=0.526 Sum_probs=33.8
Q ss_pred eee-EEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 67 YEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 67 YeA-kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
|++ +|++.+..+|...|+|+..||....+-|.|++.|.
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~ 42 (54)
T 3h91_A 4 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENIL 42 (54)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC
T ss_pred eEEEEEEEEEEeCCcEEEEEEEeCCCCcCCCeecHhHCC
Confidence 444 78888888899999999999999999999999886
No 52
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=94.85 E-value=0.028 Score=44.94 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=44.8
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccChH
Q 020442 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (326)
Q Consensus 51 ~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~e 109 (326)
...+|+.|++.+ .+.||.|+|+++... ..+.|+|.+|... |.|+.++|....++
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~---~~~~V~fvDyGn~--e~v~~~~Lr~l~~~ 87 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN---GNLDLYFVDFGDN--GDCPLKDLRALRSD 87 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCSS---SCEEEEETTTCCE--EEECGGGCEECCHH
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC---CeEEEEEEeCCCe--EEEehHHhhcCcHH
Confidence 467999999987 579999999988642 3789999999874 89999999887653
No 53
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=94.79 E-value=0.029 Score=40.68 Aligned_cols=38 Identities=21% Similarity=0.455 Sum_probs=33.2
Q ss_pred eeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeccccc
Q 020442 66 VYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (326)
Q Consensus 66 ~YeA-kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl 103 (326)
.|+. +|++.+..+|...|+|+..||....+-|.|++.|
T Consensus 4 ~y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl 42 (62)
T 3lwe_A 4 VFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHL 42 (62)
T ss_dssp SCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEHHHH
T ss_pred eEEEEEEEEEEEcCCeEEEEEEEeCCCCcCCCeeeHhHh
Confidence 3444 7888888889999999999999999999999887
No 54
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=94.65 E-value=0.066 Score=40.22 Aligned_cols=41 Identities=29% Similarity=0.646 Sum_probs=35.3
Q ss_pred Ceeeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 64 SHVYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 64 ~~~YeA-kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
...|+. +|++.+..+|...|+|.+.||....+-|.|++.|.
T Consensus 18 ~~eyeVEkIld~r~~~g~~~YlVKWkGy~~~~nTWEP~enL~ 59 (72)
T 1pdq_A 18 DLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL 59 (72)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC
T ss_pred CceEEEEEEEEEEEeCCcEEEEEEECCCCCccCeecchHHCC
Confidence 355665 78888888899999999999999999999998874
No 55
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=94.50 E-value=0.056 Score=38.20 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=31.6
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeeccccc
Q 020442 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (326)
Q Consensus 70 kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl 103 (326)
+|++.+..+|...|+|+..||....+-|.|++.|
T Consensus 7 ~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl 40 (55)
T 3f2u_A 7 KVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL 40 (55)
T ss_dssp EEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC
T ss_pred EEEEEEEeCCeEEEEEEEEeCCCccCCeeEHHHC
Confidence 7888888889999999999999999999999988
No 56
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=94.50 E-value=0.046 Score=41.18 Aligned_cols=40 Identities=15% Similarity=0.493 Sum_probs=33.7
Q ss_pred eeeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 65 HVYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 65 ~~YeA-kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
..|+. +|++.+..+|...|+|.+.||....+-|.|++.|.
T Consensus 20 ~eyeVEkIld~r~~~g~~~YlVKWkGy~~~~~TWEp~enL~ 60 (73)
T 2k1b_A 20 QVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL 60 (73)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEECTTCCGGGCCEEETTSCS
T ss_pred ceEEEEEEEEEEEcCCcEEEEEEECCCCcccCeecchHHCC
Confidence 34544 77777777889999999999999999999999875
No 57
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=94.46 E-value=0.072 Score=50.87 Aligned_cols=52 Identities=21% Similarity=0.423 Sum_probs=43.7
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--cccc
Q 020442 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (326)
Q Consensus 50 ~~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k 105 (326)
..|++|-++.+... .++..|.|.++.. ..-.|||.||...+|.|+..+ .|+.
T Consensus 246 ~~F~~gmkLEAvD~~~p~licvATV~~v~g----~~l~v~fDgw~~~~d~w~~~~S~dI~P 302 (324)
T 3ut1_A 246 HGFQKKMKLEVVDKRNPMFIRVATVADTDD----HRVKVHFDGWNNCYDYWIDADSPDIHP 302 (324)
T ss_dssp CCCCTTCEEEEECSSSTTCEEEEEEEEECS----SEEEEEETTSCGGGCEEEETTCTTEEC
T ss_pred ccCCCCCeeeccCCCCCCceeEEEEEEecC----CEEEEEeCCCCCCCCEEEeCCCCCeec
Confidence 36999999999974 4799999999953 478999999999999999875 5554
No 58
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=94.38 E-value=0.077 Score=52.92 Aligned_cols=52 Identities=23% Similarity=0.442 Sum_probs=43.6
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--ccccc
Q 020442 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (326)
Q Consensus 51 ~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k~ 106 (326)
.|++|-++.+... .++.-|.|.+|.. ..-.|||.||...+|+|+..+ .|+..
T Consensus 366 ~F~~GMKLEAvD~~np~~icvATV~~v~~----~~l~i~fDgw~~~~d~w~~~~S~~I~Pv 422 (456)
T 3f70_A 366 GFKVGMKLEAVDLMEPRLICVATVKRVVH----RLLSIHFDGWDSEYDQWVDCESPDIYPV 422 (456)
T ss_dssp CCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEECT
T ss_pred ccccCCEEEeecCCCCCcEEEEEEEEecC----CEEEEEeCCCCCCCCeEeecCCCCcccc
Confidence 5999999999974 4799999999883 277999999999999999864 55543
No 59
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=94.31 E-value=0.054 Score=39.66 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=31.5
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 70 kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
+|++.+..+|...|+|++.||....+-|.|++.|.
T Consensus 5 ~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~ 39 (64)
T 3mts_A 5 YLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLK 39 (64)
T ss_dssp EEEEEEECSSCEEEEEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEEEEeCCeEEEEEEEecCCCcCCcEeEHHHCC
Confidence 67777777889999999999999999999999884
No 60
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=94.25 E-value=0.063 Score=40.28 Aligned_cols=35 Identities=14% Similarity=0.470 Sum_probs=31.4
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 70 kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
+|++.+..++...|+|.+.||....+-|.|++.|.
T Consensus 18 ~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~L~ 52 (74)
T 2kvm_A 18 SIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL 52 (74)
T ss_dssp EEEEEEEETTEEEEEEEETTSCGGGCEEEETTTCS
T ss_pred EEEEEEEeCCcEEEEEEEcCCCCccCeEeeHHHCC
Confidence 67777777889999999999999999999999876
No 61
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.20 E-value=0.075 Score=39.88 Aligned_cols=40 Identities=18% Similarity=0.532 Sum_probs=33.6
Q ss_pred eeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccc
Q 020442 66 VYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (326)
Q Consensus 66 ~YeA-kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k 105 (326)
.|+. +|++.+..+|...|+|.+.||....+-|.|++.|..
T Consensus 10 ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~ 50 (74)
T 2d9u_A 10 VFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILD 50 (74)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEETTSCTTTCEEEEGGGCCC
T ss_pred cEEEEEEEEEEEeCCcEEEEEEECCCCCccCccccHHHCCC
Confidence 3444 677777778899999999999999999999998763
No 62
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=94.12 E-value=0.044 Score=45.55 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=43.5
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCC--Ccceeeccc--ccccc
Q 020442 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNK--SWDEWVGVH--RLMKD 106 (326)
Q Consensus 51 ~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~--r~DEWV~~~--rl~k~ 106 (326)
.|++|-++.+.+. ..+.-|.|+++.. ..-+|||.||.. ++|-|+..+ +|+..
T Consensus 11 ~f~~GmKLEa~D~~~p~~~~vAtV~~v~g----~rl~l~~dG~~~~~~~D~W~~~~s~~I~Pv 69 (127)
T 1wjr_A 11 LITVGSLIELQDSQNPFQYWIVSVIENVG----GRLRLRYVGLEDTESYDQWLFYLDYRLRPV 69 (127)
T ss_dssp HCCTTCEEEEECSSCSSCEEEEECCCEET----TEEEECBTTCSSCCSSCEEEETTCSSCBCT
T ss_pred hccCCCEeEEecCCCCCcEEEEEEeeeeC----CEEEEEecCCCCCCCCCEeEeCCCCCcccc
Confidence 5999999999974 4788999998874 478999999999 899999874 66554
No 63
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=94.07 E-value=0.081 Score=38.22 Aligned_cols=39 Identities=15% Similarity=0.377 Sum_probs=33.3
Q ss_pred eeeee-EEEEEEeeCCee-EEEEEEcCCCCCcceeeccccc
Q 020442 65 HVYEA-KVIQVQYRLKEW-TFRVHYLGWNKSWDEWVGVHRL 103 (326)
Q Consensus 65 ~~YeA-kIl~~~~~~~~~-~Y~VHY~GWn~r~DEWV~~~rl 103 (326)
..|++ +|++.+..+|.. .|+|+..||....+-|.|++.|
T Consensus 6 ~ey~VE~Il~~r~~~g~~~~YlVkWkGy~~~~~TWEp~~nl 46 (61)
T 3g7l_A 6 DVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 46 (61)
T ss_dssp CEEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEEGGGG
T ss_pred cEEEEEEEEEEEEECCCEEEEEEEEeCCCCcCCceeeHhHC
Confidence 34555 788888877777 9999999999999999999888
No 64
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=93.94 E-value=0.046 Score=39.89 Aligned_cols=36 Identities=14% Similarity=0.534 Sum_probs=30.5
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccc
Q 020442 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (326)
Q Consensus 70 kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k 105 (326)
+|++.+..+|...|+|++.||....+-|.|++.|..
T Consensus 15 ~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~ 50 (64)
T 2dnv_A 15 ALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILD 50 (64)
T ss_dssp CEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCCC
T ss_pred EEEEEEEeCCcEEEEEEECCCCcccCCccCHhHCCC
Confidence 566666667889999999999999999999988763
No 65
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=93.82 E-value=0.08 Score=39.41 Aligned_cols=39 Identities=18% Similarity=0.387 Sum_probs=33.7
Q ss_pred eeeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeccccc
Q 020442 65 HVYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (326)
Q Consensus 65 ~~YeA-kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl 103 (326)
..|+. +|++.+..+|...|+|.+.||....+-|.|++.|
T Consensus 15 ~ey~VEkIld~R~~~g~~eYlVKWkGy~~~~~TWEp~enL 54 (69)
T 1q3l_A 15 EEYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL 54 (69)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred CcEEEEEEEEEEEECCeEEEEEEEcCCCcccCCccchHHC
Confidence 45555 7888888889999999999999999999999887
No 66
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=93.63 E-value=0.098 Score=39.14 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=32.8
Q ss_pred eeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeccccc
Q 020442 66 VYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (326)
Q Consensus 66 ~YeA-kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl 103 (326)
.|+. +|++.+..+|...|+|.+.||....+-|.|++.|
T Consensus 13 ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nL 51 (73)
T 1ap0_A 13 EYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL 51 (73)
T ss_dssp CCEEEEEEEEEECSSSEEEEEEEESSSSCCCEEEETTTC
T ss_pred eEEEEEEEEEEEeCCeEEEEEEECCCCCccCcEeeHHHC
Confidence 3444 7888888888999999999999999999999987
No 67
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=93.47 E-value=0.13 Score=39.39 Aligned_cols=41 Identities=20% Similarity=0.652 Sum_probs=33.9
Q ss_pred Ceeeee-EEEEEEe-eCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 64 SHVYEA-KVIQVQY-RLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 64 ~~~YeA-kIl~~~~-~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
+..|+. +|++.+. .+|...|+|.+.||....|-|.|++.|.
T Consensus 21 ~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~ 63 (81)
T 4hae_A 21 GDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLL 63 (81)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEE
T ss_pred CCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhh
Confidence 567777 7887765 4577899999999999999999998774
No 68
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=93.43 E-value=0.11 Score=41.56 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=46.9
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEE---E-----ee--CCeeEEEEEEcCCCCCcceeeccccccccChHhh
Q 020442 51 PYQVNEKVLAFFQS-HVYEAKVIQV---Q-----YR--LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111 (326)
Q Consensus 51 ~f~vge~vl~~~~~-~~YeAkIl~~---~-----~~--~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en~ 111 (326)
.|.+|+.|++.-+| -|+.|+|++- . .. .+...|.|.|-|=+ .| -||+..+|+.+++++.
T Consensus 6 ~~~~GdlVwaK~~gyP~WPa~V~~p~~~~~~~~~~~~~~~~~~~~V~FFg~~-~~-aWv~~~~l~p~~~~~~ 75 (109)
T 1h3z_A 6 NYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNK-EY-LWTGSDSLTPLTSEAI 75 (109)
T ss_dssp CCCTTCEEEEEETTEEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTT-CC-EEEEGGGEEECCHHHH
T ss_pred cCCCCCEEEEEeCCcCCCCEEEcccHHHhHHhhccCCCCCCCEEEEEEcCCC-CE-EEECHHHeeeCCchHH
Confidence 59999999999877 6999999942 1 01 12568999999976 44 8999999999998764
No 69
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=93.27 E-value=0.26 Score=47.03 Aligned_cols=51 Identities=25% Similarity=0.467 Sum_probs=42.9
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--cccc
Q 020442 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (326)
Q Consensus 51 ~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k 105 (326)
.|++|-++.+.+. ..+..|.|.+|... ...|||.||...+|-|+..+ .|+.
T Consensus 143 ~F~vGMKLEavDp~~p~~icvATV~~V~g~----~l~v~~Dg~~~~~d~w~~~~Sp~I~P 198 (324)
T 3ut1_A 143 GFRVGMKLEAVDKKNPSFICVATVTDMVDN----RFLVHFDNWDESYDYWCEASSPHIHP 198 (324)
T ss_dssp SCCTTCEEEEEETTEEEEEEEEEEEEEETT----EEEEEETTSCGGGCEEECTTCTTEEC
T ss_pred ccccCCEEEEecCCCCCcEEEEEEEEEECC----EEEEEECCCCCcCCEEEECCCCCccc
Confidence 5999999999985 36899999998732 58999999999999999875 4554
No 70
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=93.23 E-value=0.28 Score=44.03 Aligned_cols=53 Identities=23% Similarity=0.269 Sum_probs=44.0
Q ss_pred CcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccCh
Q 020442 51 PYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 51 ~f~vge~vl~~~-~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
...+|+.|++.+ .+.||-|+|+++... ..+.|+|.+|.. -++|+.++|+...+
T Consensus 65 ~~~~G~~c~a~~~d~~wyRa~V~~~~~~---~~~~V~~vDyGn--~~~v~~~~lr~l~~ 118 (246)
T 2hqx_A 65 APRRGEFCIAKFVDGEWYRARVEKVESP---AKIHVFYIDYGN--REVLPSTRLGTLSP 118 (246)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEEEET---TEEEEEETTTCC--EEEECGGGEECCCG
T ss_pred CCCCCCEEEEEcCCCCEEEEEEEEEcCC---CeEEEEEEeCCC--eEEEeHHHhhcCCH
Confidence 467999999988 689999999999643 378999999876 37999999888764
No 71
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=93.22 E-value=0.08 Score=45.64 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=48.4
Q ss_pred CCCCcCCCCEEEEEeCC-eeeeeEEEEEEee----------------------------CCeeEEEEEEcCCCCCcceee
Q 020442 48 ASCPYQVNEKVLAFFQS-HVYEAKVIQVQYR----------------------------LKEWTFRVHYLGWNKSWDEWV 98 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~~-~~YeAkIl~~~~~----------------------------~~~~~Y~VHY~GWn~r~DEWV 98 (326)
+.+.|++|+.|++.-.| -||.|.|++-... .+...|.|.|.|=+..| -||
T Consensus 33 ~~~~~~pgdlVWAK~~GyPwwPa~Iidp~~p~~g~~~~~v~ip~pP~~Vlk~~~~~~~~~~~~~ylV~FFd~~~t~-aWV 111 (158)
T 3pfs_A 33 DRGDLEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKLFLVLFFDNKRTW-QWL 111 (158)
T ss_dssp CCSCCCTTCEEEEECTTSCEEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHHTSCEEEEEECSTTCCE-EEE
T ss_pred cCCCCCCCCEEEEecCCCCCCCEEEcCCCCccccccccccccCCChHHHHhhcccccccCCCCEEEEEEcCCCCce-Eee
Confidence 44569999999999877 7999999883331 13568999999944455 699
Q ss_pred ccccccccChHh
Q 020442 99 GVHRLMKDTEAN 110 (326)
Q Consensus 99 ~~~rl~k~t~en 110 (326)
+.++|..++.+.
T Consensus 112 ~~~~L~Pl~~d~ 123 (158)
T 3pfs_A 112 PRDKVLPLGVED 123 (158)
T ss_dssp EGGGEEECSSCH
T ss_pred ccccEeecCCch
Confidence 999999998655
No 72
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=93.14 E-value=0.069 Score=42.77 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=45.1
Q ss_pred CCCCcCCCCEEEEEeCC-eeeeeEEEEEEe--------eCCeeEEEEEEcCCCCCcceeeccccccccChH
Q 020442 48 ASCPYQVNEKVLAFFQS-HVYEAKVIQVQY--------RLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~~-~~YeAkIl~~~~--------~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~e 109 (326)
.|-.|.+|+.|++.-+| -|++|+|++... ......|.|+|-|=+ .| -||+.++|+.+++.
T Consensus 5 ~g~~~~~GdlVwaK~~g~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~-~~-awv~~~~l~p~~~~ 73 (110)
T 2daq_A 5 SSGKLHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSH-DY-YWVHQGRVFPYVEG 73 (110)
T ss_dssp CCCSCCSSEEEEEECSSSCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTT-EE-EEECSSSSEECCSS
T ss_pred CCCCCCCCCEEEEEeCCCCCCceeeCChhhCCHHHhhccCCCCcEEEEEecCC-CE-EEEcHHHCcCcchh
Confidence 44468899999998776 699999998742 112357999999932 22 59999999988753
No 73
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=93.12 E-value=0.17 Score=50.15 Aligned_cols=52 Identities=25% Similarity=0.495 Sum_probs=43.9
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--cccc
Q 020442 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (326)
Q Consensus 50 ~~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k 105 (326)
..|++|-++.+.+. .++..|.|.+|.. ....|||.||...+|.|+..+ .|+.
T Consensus 361 ~~F~~GMKLEAvD~~np~~IcvATV~~v~~----~~l~v~fDgw~~~~d~w~~~~S~~I~P 417 (437)
T 3feo_A 361 HGFRVGMKLEAVDLMEPRLICVATVTRIIH----RLLRIHFDGWEEEYDQWVDCESPDLYP 417 (437)
T ss_dssp CCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEEC
T ss_pred ccCccCCEEEeecCCCCCcEEEEEEeEEcC----CEEEEEECCCCCcCCeEEeCCCCCccc
Confidence 35999999999974 5899999999973 378999999999999998774 5554
No 74
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=93.10 E-value=0.45 Score=37.14 Aligned_cols=34 Identities=15% Similarity=0.382 Sum_probs=26.8
Q ss_pred EEEEEEe--eCCeeEEEEEEcCCCC-Ccceeeccccc
Q 020442 70 KVIQVQY--RLKEWTFRVHYLGWNK-SWDEWVGVHRL 103 (326)
Q Consensus 70 kIl~~~~--~~~~~~Y~VHY~GWn~-r~DEWV~~~rl 103 (326)
+|++.+. .+|...|+|++.||.. .++-|.|+..|
T Consensus 35 ~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl 71 (92)
T 2rso_A 35 KVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADC 71 (92)
T ss_dssp EEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGG
T ss_pred EEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHH
Confidence 5555554 3567899999999984 78899999887
No 75
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=92.49 E-value=0.052 Score=46.10 Aligned_cols=56 Identities=13% Similarity=0.284 Sum_probs=44.4
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee---CCeeEEEEEEcCCCCCcceeeccccccccCh
Q 020442 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR---LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 51 ~f~vge~vl~~~~~-~~YeAkIl~~~~~---~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
.|.+|+.|++.-+| -|++|+|+..... .....|.|.|.|=+.+ -||...+|+.+++
T Consensus 22 ~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~~~~~~~~~V~FfG~~~~--awv~~~~l~~f~e 81 (153)
T 4fu6_A 22 DFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHET--AFLGPKDIFPYSE 81 (153)
T ss_dssp GCCTTCEEEECCTTSCCEEEEECCCC---CCCCTTCEEEEETTTCCE--EEECGGGEEEHHH
T ss_pred CCCCCCEEEEeCCCCCCCCEEEeEchhhccCCCCCEEEEEecCCCCe--EEeCHHHccChHh
Confidence 59999999999887 6999999876432 2234899999997654 6999999999964
No 76
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=92.16 E-value=0.22 Score=41.29 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=45.8
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEe-------eCCeeEEEEEEcCCCCCcceeeccccccccChHhh
Q 020442 51 PYQVNEKVLAFFQS-HVYEAKVIQVQY-------RLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111 (326)
Q Consensus 51 ~f~vge~vl~~~~~-~~YeAkIl~~~~-------~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en~ 111 (326)
.|.+|+.|++.-+| -|+.|+|+.... ......|.|.|-|=...| -||+..+|+.+++...
T Consensus 22 ~~~~GdlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~~-aWv~~~~l~pf~~~~~ 89 (134)
T 2gfu_A 22 DFSPGDLVWAKMEGYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTR-GWVSKRLLKPYTGSKS 89 (134)
T ss_dssp CCCTTSEEEECCTTSCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCEE-EEECGGGEEESCCTTS
T ss_pred CCCCCCEEEEeecCCCCCCeeecchhhhhhhhhccCCCceEEEEECCCCCce-EEECHHHcccCcchhH
Confidence 69999999998777 699999998632 112358999999854222 5999999999976543
No 77
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=91.54 E-value=0.27 Score=42.06 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=39.4
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccCh
Q 020442 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 51 ~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
...+|+.|++.+ .|.||.|+|+++...+ .+.|+|.+|... +.+ ++|....+
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~---~~~V~fvDyGn~--~~v--~~lr~l~~ 99 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLDDG---KCEVHFIDFGNN--AVT--QQFRQLPE 99 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSTT---CEEEEETTTTEE--EEE--SCEECCCH
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECCCC---EEEEEEEecCCe--EEh--hhhhccCH
Confidence 467999999987 5899999999986532 789999999875 333 66666544
No 78
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=91.43 E-value=0.24 Score=37.31 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=31.6
Q ss_pred eeeee-EEEEEEee-CCeeEEEEEEcCCCCCcceeecccccc
Q 020442 65 HVYEA-KVIQVQYR-LKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 65 ~~YeA-kIl~~~~~-~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
..|+. +|++.+.. +|...|+|++.||....+-|.|++.|.
T Consensus 20 e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~ 61 (75)
T 2rsn_A 20 DVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF 61 (75)
T ss_dssp GCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGT
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHcc
Confidence 34555 67766654 567899999999999999999998874
No 79
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=91.36 E-value=0.54 Score=40.98 Aligned_cols=53 Identities=28% Similarity=0.283 Sum_probs=43.1
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccChH
Q 020442 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (326)
Q Consensus 51 ~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~e 109 (326)
...+|+.|++.+ .+.||.|+|+++.. ..+.|+|.++.. -+.|+.++|....++
T Consensus 51 ~~~~g~~c~a~~~~d~~wyRa~V~~v~~----~~~~V~~vDyG~--~~~v~~~~l~~l~~~ 105 (218)
T 2wac_A 51 TPKRGDLVAAQFTLDNQWYRAKVERVQG----SNATVLYIDYGN--KETLPTNRLAALPPA 105 (218)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEEET----TEEEEEETTTCC--EEEEEGGGEEECCGG
T ss_pred cCCcCCEEEEEECCCCeEEEEEEEEecC----CeEEEEEEecCC--eEEEchHHcccCChh
Confidence 367999999988 47999999999864 478999998876 377888888877643
No 80
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=91.20 E-value=0.43 Score=41.75 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=42.6
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccCh
Q 020442 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 51 ~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
..++|+.|.+.+ .+.||-|+|+++...+ .+.|+|..+... |+|+.++|+...+
T Consensus 65 ~~~~G~~c~a~~~~d~~wyRa~V~~~~~~~---~~~V~~vDyG~~--~~v~~~~l~~l~~ 119 (201)
T 4b9w_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPSG---NVKVHFVDYGNV--EEVTTDQLQAILP 119 (201)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTTS---CEEEEETTTCCE--EEECGGGEEECCG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCC---eEEEEEEccCCE--EEEEHHHhccChH
Confidence 356899999987 4799999999885432 588999999874 8999998887654
No 81
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=90.65 E-value=0.75 Score=37.70 Aligned_cols=53 Identities=11% Similarity=0.263 Sum_probs=42.8
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccCh
Q 020442 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 51 ~f~vge~vl~~~~-~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
.+.+|++|.|.|. +..|.|+|+++... ..|-|+|. ..+|=.+.+...|....-
T Consensus 5 ~v~vGq~V~akh~ngryy~~~V~~~~~~---~~y~V~F~--DgS~s~dl~peDIvs~dc 58 (118)
T 2qqr_A 5 SITAGQKVISKHKNGRFYQCEVVRLTTE---TFYEVNFD--DGSFSDNLYPEDIVSQDC 58 (118)
T ss_dssp CCCTTCEEEEECTTSSEEEEEEEEEEEE---EEEEEEET--TSCEEEEECGGGBCSSCH
T ss_pred eeccCCEEEEECCCCCEEeEEEEEEeeE---EEEEEEcC--CCCccCCCCHhhcccccc
Confidence 4789999999996 68999999999764 58999996 556667888877776654
No 82
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=90.57 E-value=0.56 Score=41.82 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=43.2
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccChH
Q 020442 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (326)
Q Consensus 51 ~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~e 109 (326)
...+|+.|++.+ .|.||-|+|+++... ..+.|+|..+... |+|+.++|+...++
T Consensus 65 ~~~~G~~c~a~~~~d~~WyRa~V~~~~~~---~~~~V~~vDyGn~--~~v~~~~l~~l~~~ 120 (226)
T 4b9x_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPS---GNVKVHFVDYGNV--EEVTTDQLQAILPQ 120 (226)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSS---SEEEEECTTTCCE--EEEEGGGEECCCGG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC---CeEEEEEEecCCE--EEEEHHHhccChHH
Confidence 356899999987 479999999998643 2688999999874 78999988876543
No 83
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=90.47 E-value=0.13 Score=40.37 Aligned_cols=55 Identities=11% Similarity=0.281 Sum_probs=44.4
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee---CCeeEEEEEEcCCCCCcceeeccccccccC
Q 020442 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR---LKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (326)
Q Consensus 51 ~f~vge~vl~~~~~-~~YeAkIl~~~~~---~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t 107 (326)
.|++||.|++.-+| -++.|+|+++... ....+|.|.|-|-+.+ -||+.++|+.+.
T Consensus 5 ~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~k~~~~~~~V~FFGt~~~--awv~~~~l~pf~ 63 (94)
T 3qby_A 5 AFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHET--AFLGPKDLFPYD 63 (94)
T ss_dssp CCCTTCEEEECCTTSCCEEEEECCCCTTSBCCCTTCEEEEETTTCCE--EEECGGGEEEHH
T ss_pred cCccCCEEEEecCCCCCCCEEEeecccccccCCCCEEEEEEEcCCCc--ceEchhHeeEHH
Confidence 59999999998877 6899999987431 1235899999997643 599999999987
No 84
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=89.51 E-value=0.24 Score=37.38 Aligned_cols=34 Identities=15% Similarity=0.390 Sum_probs=27.2
Q ss_pred EEEEEe-eCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 71 VIQVQY-RLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 71 Il~~~~-~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
|++.+. .+|...|+|++.||....+-|.+++.|.
T Consensus 19 Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~ 53 (78)
T 2dnt_A 19 IVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLV 53 (78)
T ss_dssp EEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCT
T ss_pred EEEEEEcCCCcEEEEEEECCCCccCCceecHHHHH
Confidence 444443 3567899999999999999999999875
No 85
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=89.43 E-value=0.26 Score=42.17 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=46.0
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee----CCeeEEEEEEcCCCCCcceeeccccccccCh
Q 020442 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR----LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 51 ~f~vge~vl~~~~~-~~YeAkIl~~~~~----~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
.|.+|+.|++.-+| -|+.|+|++.... ....+|.|.|-|-+.+ -||..++|+.+++
T Consensus 16 ~f~~GDLVWaKvkG~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~~~--awv~~~~L~pf~e 76 (154)
T 3llr_A 16 GFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKF--SVVCVEKLMPLSS 76 (154)
T ss_dssp CCCTTCEEEECCTTSCCEEEEEECGGGTTSCCCCTTEEEEEETTTCCE--EEEEGGGEEEGGG
T ss_pred CCccCCEEEEecCCCCCCCEEEecccccccccCCCCEEEEEEeCCCCE--EEEcHHHCcchhh
Confidence 69999999998776 6999999987521 1234899999999854 6999999999975
No 86
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=88.73 E-value=0.96 Score=45.83 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=44.8
Q ss_pred CcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccCh
Q 020442 51 PYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 51 ~f~vge~vl~~~-~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
...+|+.|++.+ .+.||-|+|+++.. ...+.|+|.+|.. -++|+.+.|+...+
T Consensus 411 ~~~~G~~c~a~~~d~~wyRa~I~~v~~---~~~~~V~fvDyGn--~e~v~~~~Lr~l~~ 464 (570)
T 3bdl_A 411 APRRGEFCIAKFVDGEWYRARVEKVES---PAKIHVFYIDYGN--REVLPSTRLGTLSP 464 (570)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEEEE---TTEEEEEETTTCC--EEEECGGGEECCCG
T ss_pred CCCcCCEEEEEECCCCEEEEEEEEEcC---CCeEEEEEEeCCC--eEEEEHHHCccCCH
Confidence 467999999998 78999999999976 2478999999986 47899998888764
No 87
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=88.66 E-value=0.56 Score=39.69 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=45.0
Q ss_pred CCcCCCCEEEEEeCC-eeeeeEEEEEEeeC----CeeEEEEEEcCCCCCcceeeccccccccCh
Q 020442 50 CPYQVNEKVLAFFQS-HVYEAKVIQVQYRL----KEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 50 ~~f~vge~vl~~~~~-~~YeAkIl~~~~~~----~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
..|.+||.|++.-+| -|+.|+|++..... ....|.|.|-|-+. + -||..++|+.+++
T Consensus 10 ~~~~~GDlVWaKvkGyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~~~-~-awv~~~~L~p~~~ 71 (147)
T 1khc_A 10 KEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGK-F-SEISADKLVALGL 71 (147)
T ss_dssp SSCCTTCEEEEEETTTEEEEEEEECGGGTTSCCCCTTEEEEEETTTCC-E-EEEEGGGCEETTS
T ss_pred ccCcCCCEEEEecCCcCCCCEEeccchhhhcccCCCCeEEEEEecCCC-E-EEEcHHHCccchH
Confidence 369999999998776 79999999765421 12489999999663 2 7999999998864
No 88
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=88.31 E-value=0.14 Score=37.86 Aligned_cols=35 Identities=14% Similarity=0.417 Sum_probs=27.9
Q ss_pred EEEEEEeeC-CeeE-EEEEEcCCCCCcceeecccccc
Q 020442 70 KVIQVQYRL-KEWT-FRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 70 kIl~~~~~~-~~~~-Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
+|++.+..+ |... |+|++.||....+-|.|++.|.
T Consensus 13 ~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~enL~ 49 (70)
T 1g6z_A 13 RIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLS 49 (70)
T ss_dssp SCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGS
T ss_pred EEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHHHh
Confidence 455555555 6677 9999999999999999998873
No 89
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=87.49 E-value=1.2 Score=38.32 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=33.9
Q ss_pred CcCCCCEEEEEeC--CeeeeeEEEEEEee----------------CCeeEEEEEEcCCC
Q 020442 51 PYQVNEKVLAFFQ--SHVYEAKVIQVQYR----------------LKEWTFRVHYLGWN 91 (326)
Q Consensus 51 ~f~vge~vl~~~~--~~~YeAkIl~~~~~----------------~~~~~Y~VHY~GWn 91 (326)
.|++||.|-|... |-|+||+|++|-.. .....|.|-|.++-
T Consensus 10 lYKinelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddyp 68 (161)
T 3db3_A 10 LYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYP 68 (161)
T ss_dssp SSCTTCEEEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCG
T ss_pred eEEecceeeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCc
Confidence 6999999999984 89999999997653 13468999998873
No 90
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=87.11 E-value=1.1 Score=40.55 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=34.2
Q ss_pred CcCCCCEEEEEeC--CeeeeeEEEEEEeeC-------CeeEEEEEEcCC
Q 020442 51 PYQVNEKVLAFFQ--SHVYEAKVIQVQYRL-------KEWTFRVHYLGW 90 (326)
Q Consensus 51 ~f~vge~vl~~~~--~~~YeAkIl~~~~~~-------~~~~Y~VHY~GW 90 (326)
.|+|||.|-|.+. |.||+|+|++|.... ....|-|-|.++
T Consensus 2 ~yki~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~ 50 (226)
T 3ask_A 2 LYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDY 50 (226)
T ss_dssp CSCTTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTC
T ss_pred ccccCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccC
Confidence 4899999999984 799999999998743 447899999987
No 91
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=86.19 E-value=0.84 Score=40.01 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=33.6
Q ss_pred CCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcCC
Q 020442 48 ASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLGW 90 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~~--~~YeAkIl~~~~~~~~~~Y~VHY~GW 90 (326)
|...|..|++||+.+.. ..|.|.|.....+ ....|.|.|.|=
T Consensus 113 ~~~~f~~G~~VLAlYP~TT~FY~A~V~~~p~~-~~~~y~L~FEdd 156 (180)
T 3mea_A 113 PEALFQKEQLVLALYPQTTCFYRALIHAPPQR-PQDDYSVLFEDT 156 (180)
T ss_dssp GGGSCCTTCEEEEECTTSSEEEEEEEEECCSS-TTCCEEEEEBCT
T ss_pred ccccCCCCCEEEEeCCCCceeeEEEEecCCCC-CCCcEEEEEcCC
Confidence 34469999999999975 7999999987643 234799999874
No 92
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=84.90 E-value=0.86 Score=37.61 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=42.0
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccC
Q 020442 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (326)
Q Consensus 51 ~f~vge~vl~~~~-~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t 107 (326)
.+.+|++|.|.|. |..|.|+|+.+.. +..|.|+|. ..+|=.++.+..|.-..
T Consensus 6 ~v~vGq~V~ak~~ngryy~~~V~~~~~---~~~y~V~F~--DgS~s~dl~PedIvs~d 58 (123)
T 2xdp_A 6 VISVGQTVITKHRNTRYYSCRVMAVTS---QTFYEVMFD--DGSFSRDTFPEDIVSRD 58 (123)
T ss_dssp CCCTTCCCCCCCCCCCCCCCEEEEEEE---EEEEEEEET--TSCEEEEECGGGBCSSC
T ss_pred ccccCCEEEEECCCCcEEeEEEEEEee---EEEEEEEcC--CCCccCCCCHhHccccc
Confidence 4789999999997 7999999999986 468999996 56666778777775543
No 93
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=82.78 E-value=2.1 Score=42.60 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=38.0
Q ss_pred CcCCCCEEEEEeCC---eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--cccc
Q 020442 51 PYQVNEKVLAFFQS---HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (326)
Q Consensus 51 ~f~vge~vl~~~~~---~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k 105 (326)
.|++|-+|.+.+.. .+..|.|.++. +..++|||.||..+.|-|+..+ +|+.
T Consensus 153 ~F~~GmkLE~vD~~~~~~~~vAtV~~v~----g~rl~l~~~~~~~~~dfWc~~~Sp~IhP 208 (456)
T 3f70_A 153 PFRQGMRLEVVDKSQVSRTRMAVVDTVI----GGRLRLLYEDGDSDDDFWCHMWSPLIHP 208 (456)
T ss_dssp SSCTTCEEEEECTTCTTCEEEEEEEEEE----TTEEEEEECC----CCEEEETTCTTEEE
T ss_pred CCCCCCEEEEECCCCCcceEEEEEEEEE----CCEEEEEEcCCCCCCceEEeCCCCCeec
Confidence 59999999999863 56778888886 2489999999999999999864 5544
No 94
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=82.60 E-value=1.6 Score=43.18 Aligned_cols=44 Identities=32% Similarity=0.386 Sum_probs=34.8
Q ss_pred CCCCCCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcCC
Q 020442 44 PPTPASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLGW 90 (326)
Q Consensus 44 ~~~~~~~~f~vge~vl~~~~~--~~YeAkIl~~~~~~~~~~Y~VHY~GW 90 (326)
|+..|...|.+|++||+.+.. ..|.|.|...... ..|.|+|.|=
T Consensus 450 p~~~~~~~~~~~~~v~a~~p~tt~fy~a~v~~~~~~---~~~~~~f~~~ 495 (522)
T 3mp6_A 450 PPGFPTKNYPPGTKVLARYPETTTFYPAIVIGTKRD---GTCRLRFDGE 495 (522)
T ss_dssp CSSCCCCCCCTTCEEEEECTTCSEEEEEEEEEECTT---SCEEEEETTC
T ss_pred CCCCcccCCCCCCEEEEECCCCcceEeEEEecCCCC---CeEEEEecCC
Confidence 444555579999999999975 7999999986443 2699999983
No 95
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Probab=82.04 E-value=0.72 Score=38.43 Aligned_cols=59 Identities=19% Similarity=0.376 Sum_probs=45.9
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee----------------------------CCeeEEEEEEcCCCCCcceeeccc
Q 020442 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR----------------------------LKEWTFRVHYLGWNKSWDEWVGVH 101 (326)
Q Consensus 51 ~f~vge~vl~~~~~-~~YeAkIl~~~~~----------------------------~~~~~Y~VHY~GWn~r~DEWV~~~ 101 (326)
.|+.|+.|.+.-.| -||.|.|++-... .+...|.|.|.|=...| -||+.+
T Consensus 5 ~~~~~dlVWAK~~gyP~wPa~Iidp~~p~~g~~~~g~~ip~pP~~Vl~~~~~~~~~~~~~~y~V~FFd~~~t~-aWv~~~ 83 (130)
T 3l42_A 5 PLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTW-QWLPRT 83 (130)
T ss_dssp SSCTTCEEEECCTTSCCEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHCSSCEEEEEESSTTCCE-EEEEGG
T ss_pred cCCCCCEEEEecccCCCCCEEEcCCCCccccccccCccCCCChHHHHhhcccccccCCCcEEEEEeCCCCCce-Eeeccc
Confidence 59999999998877 6999999883211 12568999999944445 699999
Q ss_pred cccccChHh
Q 020442 102 RLMKDTEAN 110 (326)
Q Consensus 102 rl~k~t~en 110 (326)
.|..++.++
T Consensus 84 ~i~pl~~d~ 92 (130)
T 3l42_A 84 KLVPLGVNQ 92 (130)
T ss_dssp GEEESSSCH
T ss_pred ceeecCCch
Confidence 999987655
No 96
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=80.41 E-value=3.8 Score=36.76 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=43.5
Q ss_pred CCCCCCCcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc
Q 020442 45 PTPASCPYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH 101 (326)
Q Consensus 45 ~~~~~~~f~vge~vl~~~~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ 101 (326)
|+.|...+.+|..+..-+.|.|+.|+|+++.-. -=.|+|.+=+++ |||-.+
T Consensus 152 P~rpmv~~~~GQ~i~~E~~g~w~~~~V~~vD~S----Lv~v~f~~dkr~--EWIYRG 202 (213)
T 3dlm_A 152 PNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGS----LVRILFLDDKRC--EWIYRG 202 (213)
T ss_dssp TCCCCCCCCTTCEEEEEETTEEEEEEEEEEETT----EEEEEETTTTEE--EEEETT
T ss_pred CCCceEEcCCCCEEEEEecCcEEEEEEEEEcce----eEEEEEcCCCee--EEEEcC
Confidence 478999999999999999999999999999743 567899887754 999764
No 97
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.58 E-value=4.3 Score=31.33 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=39.7
Q ss_pred CCCcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccChH
Q 020442 49 SCPYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (326)
Q Consensus 49 ~~~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~e 109 (326)
.+..++|+-|-|.. ++.||-|+|+++...+. --|-|..+.. -+-|+.++|+...+.
T Consensus 19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~---veVl~~DyGn--~~~V~~~~LR~L~~~ 76 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTL---VEVLLYDVGV--ELVVNVDCLRKLEEN 76 (85)
T ss_dssp CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSE---EEEECTTTCC--EEEEETTTEEECCHH
T ss_pred ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCe---EEEEEEccCC--EEEEEccccccCCHH
Confidence 34577999998884 56999999999987543 3333434433 288899999887643
No 98
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=73.74 E-value=5.9 Score=35.48 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=40.3
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 51 ~f~vge~vl~~~~-~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
..+||-.|+..+. +.||.++|++|....++.+|.|-|..=. +.-|+..+|-
T Consensus 8 ~l~Vg~~vlg~k~~~~W~rg~v~~I~~~~~g~~YkVkF~~~g---~~ivs~~hiA 59 (213)
T 3dlm_A 8 DLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKG---KSLLSGNHIA 59 (213)
T ss_dssp TEETTCEEEEECTTSBEEEEEEEEEEEETTEEEEEEEESSSC---EEEECGGGEE
T ss_pred cEEEccEEEEEecCCcEEEEEEEEEEECCCCeEEEEEEcCCC---CEEeecceEE
Confidence 4779999999986 6999999999999878899999998422 3456655543
No 99
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=73.68 E-value=7.1 Score=32.24 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=33.1
Q ss_pred CCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcC-CCCCcceeecccccccc
Q 020442 54 VNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLG-WNKSWDEWVGVHRLMKD 106 (326)
Q Consensus 54 vge~vl~~~-~~~~YeAkIl~~~~~~~~~~Y~VHY~G-Wn~r~DEWV~~~rl~k~ 106 (326)
.+..|-+.. .|.||+|.|.++..+ .++|+|.+ |.. .++|+.+.++-.
T Consensus 4 ~~~~VEV~~~~G~~y~a~V~~v~~d----~~~V~f~n~w~~--~~~vp~~~vRlp 52 (128)
T 3h8z_A 4 QGLPVEVRGSNGAFYKGFVKDVHED----SVTIFFENNWQS--ERQIPFGDVRLP 52 (128)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECSS----EEEEEETTCTTC--CEEEEGGGEECC
T ss_pred cccEEEEecCCCCEEEEEEEEEeCC----cEEEEEccccCc--ceEechhhEEcC
Confidence 455665554 589999999988432 69999964 443 578988877643
No 100
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=72.57 E-value=7.7 Score=33.24 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=29.6
Q ss_pred CcCCCCEEEEEeC-------CeeeeeEEEEEEeeCCeeEEEEE-EcCC
Q 020442 51 PYQVNEKVLAFFQ-------SHVYEAKVIQVQYRLKEWTFRVH-YLGW 90 (326)
Q Consensus 51 ~f~vge~vl~~~~-------~~~YeAkIl~~~~~~~~~~Y~VH-Y~GW 90 (326)
.++||+.|++-|. |.||+|+|.+.+......+-+++ +.|=
T Consensus 92 ~L~vGqvVMvNYN~d~PkerGfWYDaeI~~~~~~rT~rEl~~~i~LG~ 139 (161)
T 3db3_A 92 DLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETRTARELYANVVLGD 139 (161)
T ss_dssp GCCTTCEEEEEECSSSTTSCCEEEEEEEEEEEECSSCEEEEEEEECSS
T ss_pred HCCcCcEEEEecCCCCccccceeEEEEEeeehhhhhhheeEEEEEECC
Confidence 5899999999874 78999999998765544444443 4554
No 101
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=70.95 E-value=2.9 Score=35.69 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=28.9
Q ss_pred cCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEE-cCCCC
Q 020442 52 YQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHY-LGWNK 92 (326)
Q Consensus 52 f~vge~vl~~~~~--~~YeAkIl~~~~~~~~~~Y~VHY-~GWn~ 92 (326)
-.+|++|++.|.+ -+|.++|..... ..+|.|.| .|..+
T Consensus 9 ~~iG~rVfArWsd~~yyYpG~V~~~~~---~~~Y~V~FdDG~~k 49 (156)
T 1ssf_A 9 SFVGLRVVAKWSSNGYFYSGKITRDVG---AGKYKLLFDDGYEC 49 (156)
T ss_dssp CSTTCEEEECSSCSSEEEEEEEEECCT---TTEEEEECTTSCEE
T ss_pred chhccEEEEEcCCCCcccccEEEEecc---CCEEEEEEcCCCee
Confidence 3699999999964 677999998643 33799998 46555
No 102
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=66.71 E-value=40 Score=25.57 Aligned_cols=89 Identities=12% Similarity=0.034 Sum_probs=54.3
Q ss_pred CCCCCHHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCcccCChhhHhhHHHhhhcCC-CCCcccChHHHHHHh
Q 020442 195 PRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADV-SPSSVYGAEHLLRLF 273 (326)
Q Consensus 195 P~~~tV~~IL~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~QY~~~l~~~~-~pS~iYG~~HLLRLf 273 (326)
|...|+.+.+++|+.+.. . +.....+..-...|+.|++.+-.. +. .++ --...++-+.+
T Consensus 4 ~~~~t~~~~~~~fl~~l~-~-~~s~~Ti~~Y~~~l~~f~~~l~~~-----------------~~~~l~-~it~~~i~~y~ 63 (117)
T 3nrw_A 4 RPSLSPREARDRYLAHRQ-T-DAADASIKSFRYRLKHFVEWAEER-----------------DITAMR-ELTGWKLDEYE 63 (117)
T ss_dssp CCCCCHHHHHHHHHHHHT-T-TSCHHHHHHHHHHHHHHHHHHHHT-----------------TCCSGG-GCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-c-CCCHHHHHHHHHHHHHHHHHHHHc-----------------CCCChH-HCCHHHHHHHH
Confidence 677899999999999886 2 222333444444455544432100 00 111 12334555554
Q ss_pred hhhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 020442 274 VKLPELLVHAKIEEETLTLLQHKLVDLLKHCIGF 307 (326)
Q Consensus 274 vkLP~ll~~t~~d~~si~~l~~~l~~fL~fL~~n 307 (326)
..| ....+...+++.....+..|++|+.+.
T Consensus 64 ~~l----~~~~~s~~Ti~~~ls~lr~f~~~l~~~ 93 (117)
T 3nrw_A 64 TFR----RGSDVSPATLNGEMQTLKNWLEYLARI 93 (117)
T ss_dssp HHH----HTSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH----HhCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 433 225689999999999999999999864
No 103
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=63.72 E-value=0.67 Score=32.61 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=23.8
Q ss_pred EEEEEeeC-Cee-EEEEEEcCCCCCcceeeccccc
Q 020442 71 VIQVQYRL-KEW-TFRVHYLGWNKSWDEWVGVHRL 103 (326)
Q Consensus 71 Il~~~~~~-~~~-~Y~VHY~GWn~r~DEWV~~~rl 103 (326)
|++.+..+ |.. .|+|+..|| .-+-|-|++.|
T Consensus 6 Ild~r~~~~g~~~~YlVKWkgy--~~~TWEp~~nL 38 (54)
T 1x3p_A 6 VIGKRVGDDGKTIEYLVKWTDM--SDATWEPQDNV 38 (54)
T ss_dssp CCCBSSCSSSCCCCBCCCCSSS--SSCSCSTTCCS
T ss_pred EEEEEEcCCCcEEEEEEEECCC--CcCCccchHHC
Confidence 45445444 666 899999999 56899999886
No 104
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=63.16 E-value=11 Score=31.91 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=31.1
Q ss_pred CCEEEEEeCC---eeeeeEEEEEEee--CCeeEEEEEEcCCCC
Q 020442 55 NEKVLAFFQS---HVYEAKVIQVQYR--LKEWTFRVHYLGWNK 92 (326)
Q Consensus 55 ge~vl~~~~~---~~YeAkIl~~~~~--~~~~~Y~VHY~GWn~ 92 (326)
-.+|+++|.| -.|+|.|+..... .+...|+|+|..=+.
T Consensus 9 ~NrVfAff~G~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~~ 51 (153)
T 2fhd_A 9 KNRVLAFFKGYPSFYYPATLVAPVHSAVTSSIMYKVQFDDATM 51 (153)
T ss_dssp GGEEEEECCSSSCCEEEEEEEEEECCSSCCBCEEEEEETTSCE
T ss_pred cceEEEEcCCCcccccceEEEccCCCcccCCeEEEEEEcCCCC
Confidence 4679999976 6899999999865 567899999986554
No 105
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=61.15 E-value=1.9 Score=37.70 Aligned_cols=30 Identities=17% Similarity=0.453 Sum_probs=26.0
Q ss_pred eeCCeeEEEEEEcCCCCCcceeeccccccc
Q 020442 76 YRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (326)
Q Consensus 76 ~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k 105 (326)
..++...|+|.+.||+..++.|+++..|..
T Consensus 53 ~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~ 82 (187)
T 2b2y_A 53 KEPGEIQYLIKWKGWSHIHNTWETEETLKQ 82 (187)
T ss_dssp CSCCEEEEEEEETTSCGGGCEEECHHHHHH
T ss_pred ccCCcEEEEEEECCCCcccCeeCCHHHhCc
Confidence 445778999999999999999999987754
No 106
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=58.11 E-value=3.7 Score=42.94 Aligned_cols=27 Identities=7% Similarity=0.266 Sum_probs=23.9
Q ss_pred CCeeEEEEEEcCCCCCcceeecccccc
Q 020442 78 LKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 78 ~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
++..+|+|-|+||+..++.|++++.|.
T Consensus 69 ~~~~eylvKWkg~s~~hntWe~~e~L~ 95 (800)
T 3mwy_W 69 KENYEFLIKWTDESHLHNTWETYESIG 95 (800)
T ss_dssp HHHCEEEEECSSSCTTSCEEECHHHHC
T ss_pred cCceEEEEEeCCcceeeccccCHHHHh
Confidence 456799999999999999999998764
No 107
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=56.29 E-value=7.8 Score=29.68 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=35.2
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeec
Q 020442 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVG 99 (326)
Q Consensus 51 ~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~ 99 (326)
.-.+||++++.-. -.-..++|+++.-.+|.+-|.|+| |..-+.-+|-
T Consensus 5 ~A~vGDrlvv~g~~vg~~~R~GeIvEV~g~dG~PPY~VRw--~ddGHe~lv~ 54 (83)
T 2a7y_A 5 HAKVGDYLVVKGTTTERHDQHAEIIEVRSADGSPPYVVRW--LVNGHETTVY 54 (83)
T ss_dssp CCCTTEEEEESCTTTSCCEEEEEEEECSCSSSCSCEEEEE--TTTTEEEEEC
T ss_pred CccCCCEEEEecCcCCCCCcEEEEEEEECCCCCCCEEEEe--cCCCcEEEEe
Confidence 3468999888653 367899999999999999999998 3333444553
No 108
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=51.92 E-value=2.3 Score=34.67 Aligned_cols=40 Identities=15% Similarity=0.414 Sum_probs=31.9
Q ss_pred eeeeeE-------EEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020442 65 HVYEAK-------VIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 65 ~~YeAk-------Il~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
..|.++ |++-+..+|...|+|-+.||+...+-|-|+..|.
T Consensus 35 ~~Y~VE~i~Dp~~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~ 81 (115)
T 2b2y_C 35 TIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLK 81 (115)
T ss_dssp SHHHHHHHCBTTTTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHHH
T ss_pred ceEEEeecCCcccccccceeCCcEEEEEEECCCCchhcccCCHHHcC
Confidence 466664 3555556788999999999999999999987764
No 109
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=51.21 E-value=29 Score=31.29 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=24.7
Q ss_pred CcCCCCEEEEEe-------CCeeeeeEEEEEEeeC
Q 020442 51 PYQVNEKVLAFF-------QSHVYEAKVIQVQYRL 78 (326)
Q Consensus 51 ~f~vge~vl~~~-------~~~~YeAkIl~~~~~~ 78 (326)
.+++|..|++.+ .|.||.|+|+++...+
T Consensus 75 ~l~~g~~vm~nyn~~~~~~~G~~y~~~I~~~~~~r 109 (226)
T 3ask_A 75 DLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETR 109 (226)
T ss_dssp GCCTTCEEEEEECTTSTTSCCEEEEEEEEEEEECS
T ss_pred ccccCcEEEEecccCCccccCceeehhhhhhhhcc
Confidence 578999999998 5899999999998764
No 110
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.85 E-value=25 Score=25.46 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=22.0
Q ss_pred eeEEEEEEcCCCCCcceeeccccc
Q 020442 80 EWTFRVHYLGWNKSWDEWVGVHRL 103 (326)
Q Consensus 80 ~~~Y~VHY~GWn~r~DEWV~~~rl 103 (326)
...|+|...|+...-.-|-+++.|
T Consensus 32 ~~eYLVKWkgl~y~e~TWE~~~~l 55 (68)
T 2epb_A 32 VTHYLVKWCSLPYEESTWELEEDV 55 (68)
T ss_dssp EEEEEEECTTSCGGGCCEEETTTS
T ss_pred ceEEEEEEcCCChhcCccccchhc
Confidence 679999999999998899999887
No 111
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=47.16 E-value=5.7 Score=34.37 Aligned_cols=26 Identities=8% Similarity=0.307 Sum_probs=23.3
Q ss_pred eeEEEEEEcCCCCCcceeeccccccc
Q 020442 80 EWTFRVHYLGWNKSWDEWVGVHRLMK 105 (326)
Q Consensus 80 ~~~Y~VHY~GWn~r~DEWV~~~rl~k 105 (326)
...|||-+.||+..++.|+++..|..
T Consensus 46 ~~EYlVKWKg~Sy~HnTWe~ee~L~~ 71 (177)
T 2h1e_A 46 NYEFLIKWTDESHLHNTWETYESIGQ 71 (177)
T ss_dssp HEEEEEEETTSCGGGCEEECHHHHCS
T ss_pred ceEEEEEECCCccccCeecCHHHHhh
Confidence 46999999999999999999987753
No 112
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=41.77 E-value=46 Score=27.19 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=25.8
Q ss_pred CCCEEEEEeC--CeeeeeEEEEEEeeCCeeEEEEEEc
Q 020442 54 VNEKVLAFFQ--SHVYEAKVIQVQYRLKEWTFRVHYL 88 (326)
Q Consensus 54 vge~vl~~~~--~~~YeAkIl~~~~~~~~~~Y~VHY~ 88 (326)
+|-+|++.|. +.+|..+|.+.... -+|.|-|.
T Consensus 7 ~G~rV~AkWsdn~~yYpG~V~~~~~~---~ky~V~Fd 40 (123)
T 2g3r_A 7 VGLRVVAKWSSNGYFYSGKITRDVGA---GKYKLLFD 40 (123)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEET---TEEEEEET
T ss_pred cceEEEEEeccCCcCcccEEEEeccC---CeEEEEEc
Confidence 7899999996 46999999886433 38999985
No 113
>3mkb_B Hemoglobin subunit beta; oxygen affinity, shortfin MAK storage, oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus} SCOP: a.1.1.2
Probab=37.97 E-value=23 Score=28.86 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=43.9
Q ss_pred CcccChHHHHHHhhhhhhhhhcC----CCC-HHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 261 SSVYGAEHLLRLFVKLPELLVHA----KIE-EETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 261 S~iYG~~HLLRLfvkLP~ll~~t----~~d-~~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
.+.+|.+=|.|||..-|+.-... +++ ...-..++..+...++-|++-...+..||..|-.
T Consensus 20 ~~~~g~~~l~rlF~~~P~tk~~F~~f~dl~~~~hg~kv~~al~~~v~~lddl~~~l~~L~~~H~~ 84 (136)
T 3mkb_B 20 SSAIGTKALERMFVVFPWTNAYFAKXXXFSASIHAAIVVGALQDAVKHEDDVKAEFVNISKAHAD 84 (136)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGTCC---CCHHHHHHHHHHHHHHHHTTTTCHHHHSHHHHHHHHH
T ss_pred chhhhHHHHHHeeEEeecchHHHHhhhhhhhHHHHHHHHHHHHHHHhccchhhhhhhhhhhhccc
Confidence 46688899999999999977765 565 3445667788888887777655577777777753
No 114
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=37.32 E-value=1.3e+02 Score=29.52 Aligned_cols=52 Identities=13% Similarity=0.013 Sum_probs=37.2
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCc--ceee-cc--ccccc
Q 020442 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSW--DEWV-GV--HRLMK 105 (326)
Q Consensus 51 ~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~--DEWV-~~--~rl~k 105 (326)
.|++|-++.+.+. ..+.-|.|.++... ....|||.||...- |-|. .. -.|+.
T Consensus 254 ~F~~GMKLEavDp~~p~~icvATV~~v~~~---g~l~l~~Dg~~~~~~~d~~~~h~~Sp~I~P 313 (437)
T 3feo_A 254 WFKEGMKLEAIDPLNLSTICVATIRKVLAD---GFLMIGIDGSEAADGSDWFCYHATSPSIFP 313 (437)
T ss_dssp CCCTTCEEEEEETTEEEEEEEEEEEEECGG---GEEEEEETTCCC-CCTTCEEEETTCTTEEC
T ss_pred ccccCCEEEEEcCCCCceEEEEEEEEEccC---CEEEEEeCCCCCCCCCCeEEeeCCCCCccc
Confidence 4999999999986 47888999887621 13569999997543 7786 43 25554
No 115
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=37.17 E-value=26 Score=28.38 Aligned_cols=60 Identities=15% Similarity=0.060 Sum_probs=43.4
Q ss_pred CcccChHHHHHHhhhhhhhhhcCC----CC-HHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 261 SSVYGAEHLLRLFVKLPELLVHAK----IE-EETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 261 S~iYG~~HLLRLfvkLP~ll~~t~----~d-~~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
.+-+|..-|.|||..-|+.....+ ++ ...-..++..+..+++-|++-...+.+||..|-.
T Consensus 20 ~~~~g~~~~~rlF~~~P~~k~~F~~f~d~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~ 84 (136)
T 1gcv_B 20 MKTVVTQALDRMFKVYPWTNRYFQKRTDFRSSIHAGIVVGALQDAVKHMDDVKTLFKDLSKKHAD 84 (136)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGTTTCTTCCHHHHHHHHHHHHHHHHHTTTCHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChHHHHHhhcccCCCccHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhHH
Confidence 355788899999999999776543 33 2445667788888888887755577777777754
No 116
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=37.14 E-value=57 Score=32.11 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=39.6
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--ccccc
Q 020442 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (326)
Q Consensus 51 ~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k~ 106 (326)
.|++|-++.+.+. ..+..|.|.++... .|+|||.|- ..|-|+..+ +|+..
T Consensus 156 ~F~~GmkLE~vD~~~~~~i~vAtV~~v~g~----rl~l~~~d~--~~dfwc~~~Sp~I~PV 210 (447)
T 3h6z_A 156 RFRLGLNLECVDKDRISQVRLATVTKIVGD----RLFLRYFDS--DDGFWCHEDSPIIHPV 210 (447)
T ss_dssp SSCTTCEEEEECTTCTTEEEEEEEEEEETT----EEEEEETTC--SCEEEEETTCTTEECT
T ss_pred ccCCCCEEEEEcCCCCccEEEEEEEEEECC----cEEEEEECC--CCCEEEeCCCCCcccc
Confidence 6999999999985 47899999988743 799999654 679999874 55543
No 117
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=36.43 E-value=2.2e+02 Score=24.98 Aligned_cols=72 Identities=10% Similarity=0.201 Sum_probs=34.1
Q ss_pred eCChhHHHHHHhH-hHHHhhcCceeeCCCCCC-HHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCcccC
Q 020442 169 QIPPPLKKQLVDD-CEFITHLGKLVKLPRTPN-VDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLL 242 (326)
Q Consensus 169 ~lP~~Lk~iLvdD-~e~I~k~~~L~~LP~~~t-V~~IL~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~~LL 242 (326)
.+|..+..++..= ..-+..+| |+++|...+ |.++.+.|-.............+..++.-|+.||.. |+.-|+
T Consensus 67 ~vP~iv~~~i~~l~~~gl~~eG-IFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~lLK~fLRe-LPePLl 140 (246)
T 3fk2_A 67 PIPIFIERCIEYIEATGLSTEG-IYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSE-LPDPLV 140 (246)
T ss_dssp CSCHHHHHHHHHHHHHCTTSTT-TTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHHHHHHHHH-SSSCSS
T ss_pred CCChHHHHHHHHHHHhCCCCCC-eeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHHh-CCCccC
Confidence 6887776543221 01133333 788887644 444444443322111111111344566667777765 444454
No 118
>3d1k_B Hemoglobin subunit beta-1/2; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 1t1n_B* 1la6_B* 3nfe_B* 3ng6_B* 2h8f_B* 1pbx_B* 1s5x_B* 1s5y_B* 1hbh_B* 2h8d_B* 2peg_B* 3gkv_B* 3gqg_B*
Probab=36.30 E-value=24 Score=28.66 Aligned_cols=60 Identities=15% Similarity=0.002 Sum_probs=43.2
Q ss_pred CcccChHHHHHHhhhhhhhhhcCC----CCH-----------HHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 261 SSVYGAEHLLRLFVKLPELLVHAK----IEE-----------ETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 261 S~iYG~~HLLRLfvkLP~ll~~t~----~d~-----------~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
.+-.|..=+.|||..-|++....+ ++. .....++..+..++.-|++-...+.+||..|-.
T Consensus 20 ~~~~g~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~ 94 (146)
T 3d1k_B 20 YDDIGPKALSRCLVVYPWTQRYFSGFGNLYNAEGIMSNANVAAHGIKVLHGLDRGMKNMDNIADAYTDLSTLHSE 94 (146)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGGTTSSCCSSHHHHHHCHHHHHHHHHHHHHTHHHHHTGGGHHHHTHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHCHhHHHHhcccccCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 356788899999999999887754 552 334557777777887777744567777777654
No 119
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=35.50 E-value=2.1e+02 Score=24.35 Aligned_cols=137 Identities=13% Similarity=0.167 Sum_probs=65.5
Q ss_pred eCChhHHHHHHhHhHHHhhc----CceeeCCCCCC-HHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCcccCC
Q 020442 169 QIPPPLKKQLVDDCEFITHL----GKLVKLPRTPN-VDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLY 243 (326)
Q Consensus 169 ~lP~~Lk~iLvdD~e~I~k~----~~L~~LP~~~t-V~~IL~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~~LLY 243 (326)
.+|..+..++. .|.+. --|+++|...+ |.++.+.|-+............+..++.-|+.||... +.-|+-
T Consensus 26 ~vP~iv~~~i~----~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lLK~flreL-PePLi~ 100 (209)
T 2ee4_A 26 PIPLFVEKCVE----FIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADL-PDPLIP 100 (209)
T ss_dssp CSCHHHHHHHH----HHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHHHHHHHHS-SSCSSC
T ss_pred CCChHHHHHHH----HHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHhC-CCccCC
Confidence 58877766532 22222 23788887654 4555555543221100000113445666677777764 444432
Q ss_pred hh---------------hHhhH-HHhhhcCCCCCcccChHHHHHHhhhhhhhhhcCCCCHHHHHHHHH------------
Q 020442 244 KS---------------EREQY-EDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQH------------ 295 (326)
Q Consensus 244 ~~---------------ER~QY-~~~l~~~~~pS~iYG~~HLLRLfvkLP~ll~~t~~d~~si~~l~~------------ 295 (326)
.. ||.+- ..++ ...++....=+.+|+++|.++-.--....|+...+..+..
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf~P~L~~~~~~~~~ 179 (209)
T 2ee4_A 101 YSLHPELLEAAKIPDKTERLHALKEIV-KKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENRE 179 (209)
T ss_dssp TTTHHHHHHHHSCSSHHHHHHHHHHHT-TTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCCCCCSSC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhcccccCCCCccHH
Confidence 11 11111 1111 1223333333455666665554433344566666554322
Q ss_pred ------HHHHHHHHHHhccchh
Q 020442 296 ------KLVDLLKHCIGFLSYV 311 (326)
Q Consensus 296 ------~l~~fL~fL~~n~e~f 311 (326)
....++++|-+|++++
T Consensus 180 ~l~~~~~~~~vve~LI~~~~~i 201 (209)
T 2ee4_A 180 FLSTTKIHQSVVETFIQQCQFF 201 (209)
T ss_dssp CSCCCTTHHHHHHHHHHTHHHH
T ss_pred HHHHhHHHHHHHHHHHHhhHHH
Confidence 2356788888887755
No 120
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=35.21 E-value=46 Score=22.85 Aligned_cols=31 Identities=6% Similarity=0.114 Sum_probs=25.0
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEeeCCee
Q 020442 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYRLKEW 81 (326)
Q Consensus 51 ~f~vge~vl~~~~~-~~YeAkIl~~~~~~~~~ 81 (326)
.|.+||.|.+..|+ .-++|+|.++...++..
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v 35 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKV 35 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEE
Confidence 58899999999998 46899999997654433
No 121
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=33.98 E-value=63 Score=23.75 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=26.1
Q ss_pred eEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccc
Q 020442 69 AKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (326)
Q Consensus 69 AkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl 103 (326)
-+|+.....+|...|+|++.|-.. =+||+...+
T Consensus 19 ekI~g~~~~~Gel~fLvkWkg~d~--~dlVpa~~a 51 (74)
T 2fmm_A 19 ERIIGATDSSGELMFLMKWKNSDE--ADLVPAKEA 51 (74)
T ss_dssp EEEEEEEEETTEEEEEEEETTCSC--CEEEEHHHH
T ss_pred eEEEEEEcCCCcEEEEEEECCCCc--ccEEEHHHH
Confidence 467888888899999999999765 259987544
No 122
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=29.75 E-value=89 Score=25.44 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=26.7
Q ss_pred CCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEc
Q 020442 53 QVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYL 88 (326)
Q Consensus 53 ~vge~vl~~~~-~~~YeAkIl~~~~~~~~~~Y~VHY~ 88 (326)
.+|+.|.+.|. |.+|.|+.+..... ..|-|-|.
T Consensus 66 ~~G~~V~V~W~DG~~y~a~f~g~~~~---~~YtV~Fe 99 (123)
T 2xdp_A 66 AEGEVVQVKWPDGKLYGAKYFGSNIA---HMYQVEFE 99 (123)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEEEE---EEEEEECT
T ss_pred CCCCEEEEEcCCCCEEeEEEeeeeeE---EEEEEEEC
Confidence 38999999996 89999999987653 47777775
No 123
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=28.37 E-value=2.8e+02 Score=23.69 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=36.5
Q ss_pred eCChhHHHHHHhHh-HHHhhcCceeeCCCCCCHHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCcccCC
Q 020442 169 QIPPPLKKQLVDDC-EFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLY 243 (326)
Q Consensus 169 ~lP~~Lk~iLvdD~-e~I~k~~~L~~LP~~~tV~~IL~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~~LLY 243 (326)
.+|..+..++..=. .-+..+| |+++|...+. +-|.+-.+.-..........+..++.-|+.||.. |+--|+-
T Consensus 24 ~vP~iv~~~i~~l~~~gl~~eG-IfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~va~lLK~flRe-LPePLl~ 96 (216)
T 1pbw_A 24 IAPPLLIKLVEAIEKKGLECST-LYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLD-LPNPVIP 96 (216)
T ss_dssp CSCHHHHHHHHHHHHHHTTCTT-TTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHHHHHHHHHHHT-SSSCSSC
T ss_pred CcCHHHHHHHHHHHHcCCCCCC-eeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHHHHHHHHHHHh-CCCCCCC
Confidence 47877766532111 1233334 8899988777 5555443321111111122355566667777765 4544543
No 124
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=27.94 E-value=35 Score=27.82 Aligned_cols=59 Identities=24% Similarity=0.183 Sum_probs=40.8
Q ss_pred cccChHHHHHHhhhhhhhhhcCC----CCH-----------HHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 262 SVYGAEHLLRLFVKLPELLVHAK----IEE-----------ETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 262 ~iYG~~HLLRLfvkLP~ll~~t~----~d~-----------~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
+-.|..=+.|||..-|++....+ ++. .....++..+..++.-|++-...+.+||..|-.
T Consensus 22 ~~~g~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~~~l~~L~~~H~~ 95 (153)
T 1lhs_A 22 SAHGQEVIIRLFQLHPETQERFAKFKNLTTIDALKSSEEVKKHGTTVLTALGRILKQKNNHEQELKPLAESHAT 95 (153)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHChhHHHHhHhhcCCCcHHHHcCCHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhhh
Confidence 55688889999999999887654 422 334566666777777766555567777777764
No 125
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=27.86 E-value=1.2e+02 Score=24.56 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=26.1
Q ss_pred CCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcC
Q 020442 54 VNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLG 89 (326)
Q Consensus 54 vge~vl~~~-~~~~YeAkIl~~~~~~~~~~Y~VHY~G 89 (326)
+|+.|.+.| .|..|.|+.+..... ..|-|-|..
T Consensus 66 ~G~~V~V~W~DG~~y~a~f~g~~~~---~~Y~V~feD 99 (118)
T 2qqr_A 66 EGEVVQVRWTDGQVYGAKFVASHPI---QMYQVEFED 99 (118)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEEEE---EEEEEEETT
T ss_pred CCCEEEEEcCCCCEeeeEEeceeEE---EEEEEEECC
Confidence 799999999 589999999876543 467777753
No 126
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=27.73 E-value=1.8e+02 Score=21.21 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCcccCChhhHhhHHHhhhcCCCCCcccChHHHHHHhh
Q 020442 195 PRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFV 274 (326)
Q Consensus 195 P~~~tV~~IL~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~QY~~~l~~~~~pS~iYG~~HLLRLfv 274 (326)
|..+|+.+++++|++...... ....+......+..||...+|..-| ++ -...++.+++.
T Consensus 3 ~~~~t~~~~~~~~~~~~~~~~--~~~T~~~y~~~l~~~i~~~~g~~~l------------------~~-it~~~i~~~~~ 61 (118)
T 2kd1_A 3 PSKLSYGEYLESWFNTKRHSV--GIQTAKVLKGYLNSRIIPSLGNIKL------------------AK-LTSLHMQNYVN 61 (118)
T ss_dssp CSCSBHHHHHHHHHHHHHHHH--CHHHHHHHHHHHTTTHHHHTTSSBG------------------GG-CCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhhhHhhCcCCH------------------Hh-CCHHHHHHHHH
Confidence 567899999999998643110 0111111222233333333443222 11 13445555554
Q ss_pred hhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 020442 275 KLPELLVHAKIEEETLTLLQHKLVDLLKHCIGF 307 (326)
Q Consensus 275 kLP~ll~~t~~d~~si~~l~~~l~~fL~fL~~n 307 (326)
.|- ...+...+++.+...+..|++|..+.
T Consensus 62 ~l~----~~g~s~~t~~~~~~~l~~~~~~a~~~ 90 (118)
T 2kd1_A 62 SLR----DEGLKRGTIEKIIKVIRNSLEHAIDL 90 (118)
T ss_dssp HHH----HHTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH----HcCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 432 13467888999999999999998764
No 127
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=26.89 E-value=47 Score=26.84 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=42.7
Q ss_pred CcccChHHHHHHhhhhhhhhhcCC-----CCH------HHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 261 SSVYGAEHLLRLFVKLPELLVHAK-----IEE------ETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 261 S~iYG~~HLLRLfvkLP~ll~~t~-----~d~------~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
.+-+|..=|.|||..-|++....+ ++. .....++..+..++.-|++-...+.+||..|-.
T Consensus 22 ~~~~g~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~ 92 (144)
T 1spg_A 22 SAELGAEALGRMLVSFPQTKIYFSEWGQDLGPQTPQVRNHGAVIMAAVGKAVKSIDNLVGGLSQLSELHAF 92 (144)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGGGTTSCSCSSTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHChHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 366789999999999999877653 321 334567777888888777744567777777654
No 128
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=26.24 E-value=49 Score=26.72 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=41.4
Q ss_pred cccChHHHHHHhhhhhhhhhcCCC----CH------HHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 262 SVYGAEHLLRLFVKLPELLVHAKI----EE------ETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 262 ~iYG~~HLLRLfvkLP~ll~~t~~----d~------~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
+-.|..=|.|||..-|++....+. +. .....+...+..++.-|++-...+.+||..|-.
T Consensus 23 ~~~g~~~~~rlF~~~P~~k~~F~~f~~~~~~~~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~ 91 (143)
T 1out_A 23 DVVGAEALGRMLTAYPQTKTYFSHWADLSPGSGPVKKHGGIIMGAIGKAVGLMDDLVGGMSALSDLHAF 91 (143)
T ss_dssp HHHHHHHHHHHHHHSGGGGGGGTTSSCCSTTCHHHHHHHHHHHHHHHHHHHTTTCHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCccHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 567888899999999998766442 21 344667777777777777744566777777654
No 129
>1out_B Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_B*
Probab=25.24 E-value=42 Score=27.20 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=43.3
Q ss_pred CcccChHHHHHHhhhhhhhhhcCC----CC-----------HHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 261 SSVYGAEHLLRLFVKLPELLVHAK----IE-----------EETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 261 S~iYG~~HLLRLfvkLP~ll~~t~----~d-----------~~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
.+-.|..=+.|||..-|++....+ ++ ......++..+..++.-|++-...+.+||..|-+
T Consensus 20 ~~~~g~~~~~rlF~~~P~~k~~F~~f~d~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~ 94 (146)
T 1out_B 20 IDEIGPLALARVLIVYPWTQRYFGSFGNVSTPAAIMGNPKVAAHGKVVCGALDKAVKNMGNILATYKSLSETHAN 94 (146)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGCGGGCCCSSHHHHHHCHHHHHHHHHHHHTHHHHHHTTTCHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCHhHHHHHHHhCCCCcHHHhccCHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhH
Confidence 355788889999999999887653 33 1344567777777877777755577778887755
No 130
>1x9f_A Globin IV, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_A*
Probab=25.20 E-value=47 Score=27.02 Aligned_cols=59 Identities=14% Similarity=-0.016 Sum_probs=38.4
Q ss_pred cccChHHHHHHhhhhhhhhhcCCCC----------HHHHHHHHHHHHHHHHHHHh---ccchhhhhhhhhhh
Q 020442 262 SVYGAEHLLRLFVKLPELLVHAKIE----------EETLTLLQHKLVDLLKHCIG---FLSYVPKLLLSFGR 320 (326)
Q Consensus 262 ~iYG~~HLLRLfvkLP~ll~~t~~d----------~~si~~l~~~l~~fL~fL~~---n~e~f~~~~~~~~~ 320 (326)
+.+|..=+.|||..-|++....+.- ......++..+..++..|++ -...+.+||..|-.
T Consensus 32 ~~~g~~~~~rlF~~~P~~k~~F~~~~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~ 103 (151)
T 1x9f_A 32 VAIVRAVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLKLLINLLDDTLVLQSHLGHLADQHIQ 103 (151)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGGTTTTTTSTTSSHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCHHHHHhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 6678888999999999887765431 13345566666666666655 34455666666644
No 131
>1cg5_B Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_B*
Probab=24.78 E-value=38 Score=27.47 Aligned_cols=60 Identities=15% Similarity=0.043 Sum_probs=40.7
Q ss_pred CcccChHHHHHHhhhhhhhhhcCC-----CCH------HHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 261 SSVYGAEHLLRLFVKLPELLVHAK-----IEE------ETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 261 S~iYG~~HLLRLfvkLP~ll~~t~-----~d~------~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
.+-+|..=|.|||..-|+.....+ ++. .....++..+..+++-|++-...+.+||..|-.
T Consensus 20 ~~~~g~~~~~rlF~~~P~~k~~F~~~~~d~~~~~~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~ 90 (141)
T 1cg5_B 20 HKQITAKALERVFVVYPWTTRLFSKLQGLFSANDIGVQQHADKVQRALGEAIDDLKKVEINFQNLSGKHQE 90 (141)
T ss_dssp HHHHHHHHHHHHHHHSGGGGTTCGGGTTCCSTTSHHHHHHHHHHHHHHHHHHHTTTSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCccHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 456788899999999999876543 322 344566777777777776644566667766543
No 132
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Probab=24.65 E-value=61 Score=26.02 Aligned_cols=59 Identities=12% Similarity=0.037 Sum_probs=42.5
Q ss_pred cccChHHHHHHhhhhhhhhhcCCC----CH------HHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 262 SVYGAEHLLRLFVKLPELLVHAKI----EE------ETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 262 ~iYG~~HLLRLfvkLP~ll~~t~~----d~------~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
+-.|..=+.|||..-|++....+. +. .....+...+..++.-|++-...+.+||..|-.
T Consensus 23 ~~~g~~~~~rlF~~~P~~k~~F~~~~d~~~~n~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~ 91 (143)
T 1xq5_A 23 EEIGSDALSRMLAVYPQTKTYFSHWKDLSPGSAPVNKHGKTIMGGIVDAVASIDDLNAGLLALSELHAF 91 (143)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGGTTCSCCSTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 567889999999999998876543 21 344667777778887777654567777777654
No 133
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=24.43 E-value=48 Score=26.91 Aligned_cols=59 Identities=22% Similarity=0.188 Sum_probs=41.1
Q ss_pred cccChHHHHHHhhhhhhhhhcCC----CCH-----------HHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 262 SVYGAEHLLRLFVKLPELLVHAK----IEE-----------ETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 262 ~iYG~~HLLRLfvkLP~ll~~t~----~d~-----------~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
+-.|..-+.|||..-|++....+ +.. .....++..+..++..|++-...+.+||..|-.
T Consensus 22 ~~~g~~~~~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld~~~~~l~~L~~~H~~ 95 (151)
T 1a6m_A 22 AGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHAT 95 (151)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTCTTTTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHChhHHHHhHhhcCCCcHHHhcCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 66788999999999999887654 311 334556677777777776655567777777654
No 134
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=24.38 E-value=2e+02 Score=20.71 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=50.6
Q ss_pred CCCCCHHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCcccCChhhHhhHHHhhhcCCCCCcccChHHHHHHhh
Q 020442 195 PRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFV 274 (326)
Q Consensus 195 P~~~tV~~IL~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~QY~~~l~~~~~pS~iYG~~HLLRLfv 274 (326)
|...|+.+++++|++...... .....+......+..||...+|...|- + -...++.+++.
T Consensus 4 ~~~~t~~~~~~~~l~~~~~~~-~~~~T~~~y~~~~~~~i~~~~g~~~l~------------------~-It~~~i~~~~~ 63 (117)
T 2kkp_A 4 PSKITVEQWLNRWLTDYAKPH-LRQSTWESYETVLRLHVIPTLGSIPLK------------------K-LQPADIQRLYA 63 (117)
T ss_dssp SCCSCHHHHHHHHHHHHTSCC-CSCCCCSHHHHHHHHHHCCCCCTSCTT------------------T-CCHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHhccC-CCccHHHHHHHHHHHHhccccCceEHH------------------H-CCHHHHHHHHH
Confidence 667899999999998742111 000111111223334444444432222 2 23445555554
Q ss_pred hhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 020442 275 KLPELLVHAKIEEETLTLLQHKLVDLLKHCIGF 307 (326)
Q Consensus 275 kLP~ll~~t~~d~~si~~l~~~l~~fL~fL~~n 307 (326)
.|- ...+...+++.....+..|++|..+.
T Consensus 64 ~l~----~~~~s~~t~~~~~~~l~~~~~~A~~~ 92 (117)
T 2kkp_A 64 SKL----ESGLSPTRVRYIHVVLHEAMSQARES 92 (117)
T ss_dssp HHH----HTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHH----HcCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 432 23467888999999999999998764
No 135
>3bom_B Hemoglobin subunit beta-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_B* 3bcq_B* 1spg_B*
Probab=24.18 E-value=54 Score=26.56 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=42.2
Q ss_pred CcccChHHHHHHhhhhhhhhhcC----CCCH-----------HHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 261 SSVYGAEHLLRLFVKLPELLVHA----KIEE-----------ETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 261 S~iYG~~HLLRLfvkLP~ll~~t----~~d~-----------~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
.+-.|..=+.|||..-|++.... +++. .....++..+..++.-|++-...+.+||..|-.
T Consensus 20 ~~~~g~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~lddl~~~l~~L~~~H~~ 94 (147)
T 3bom_B 20 VDEIGPQALARLLIVSPWTQRHFSTFGNLSTPAAIMGNPAVAKHGKTVMHGLDRAVQNLDDIKNTYVTLSVMHSE 94 (147)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGCGGGSCCSSHHHHHTCHHHHHHHHHHHHHHHHHHHCTTCHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCccHHHHccccccCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 35578889999999999987664 3442 344667777777777777644567777777654
No 136
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=24.07 E-value=58 Score=25.98 Aligned_cols=60 Identities=18% Similarity=0.104 Sum_probs=42.6
Q ss_pred CcccChHHHHHHhhhhhhhhhcCCC---CH------HHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 261 SSVYGAEHLLRLFVKLPELLVHAKI---EE------ETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 261 S~iYG~~HLLRLfvkLP~ll~~t~~---d~------~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
.+.+|..=+.|||..-|++....+. +. .....+...+..++..|++-...+.+||..|-+
T Consensus 22 ~~~~g~~~y~rlF~~~P~~k~~F~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ld~l~~~l~~L~~~H~~ 90 (142)
T 1jeb_A 22 ADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAY 90 (142)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTTCHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCccHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHhhhh
Confidence 3668899999999999998876542 11 334566777777777777655577778877755
No 137
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=23.33 E-value=1.3e+02 Score=22.28 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=28.9
Q ss_pred CCceEEEeCChhHHHHHHhHhHHHhhcCceeeCCCCCCHHHHHHHHHHhh
Q 020442 162 MENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYR 211 (326)
Q Consensus 162 ~~~~i~i~lP~~Lk~iLvdD~e~I~k~~~L~~LP~~~tV~~IL~~Y~~~~ 211 (326)
....++|.||+.|...|..-+.. ...||.+||.+.++..
T Consensus 33 ~~~Rlti~i~~~lh~rlK~~Aa~-----------~g~Smsdvvreli~~~ 71 (76)
T 1p94_A 33 KIKRVNVNFDEEKHTRFKAACAR-----------KGTSITDVVNQLVDNW 71 (76)
T ss_dssp CEEECCEEEEHHHHHHHHHHHHH-----------HTCCHHHHHHHHHHHH
T ss_pred CceeEEEEcCHHHHHHHHHHHHH-----------cCCCHHHHHHHHHHHH
Confidence 34568899999999988775442 2259999998887654
No 138
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=23.24 E-value=1.2e+02 Score=24.87 Aligned_cols=32 Identities=16% Similarity=0.374 Sum_probs=24.6
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEE
Q 020442 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVH 86 (326)
Q Consensus 51 ~f~vge~vl~~~~~~~YeAkIl~~~~~~~~~~Y~VH 86 (326)
.|++|+.|..+|..-.|-++|.+.+.. +|+|-
T Consensus 7 ~~~~g~~v~~~yKTG~YigeI~e~~~~----~~lVk 38 (130)
T 1y71_A 7 TFEIGEIVTGIYKTGKYIGEVTNSRPG----SYVVK 38 (130)
T ss_dssp CCCTTCEEEEEETTEEEEEEEEEEETT----EEEEE
T ss_pred cCCccceeEEEEecceeEEEEEeecCC----eEEEE
Confidence 389999999999988888888865433 55553
No 139
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=23.16 E-value=72 Score=25.49 Aligned_cols=59 Identities=10% Similarity=0.030 Sum_probs=38.3
Q ss_pred cccChHHHHHHhhhhhhhhhcCCC----CH------HHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 262 SVYGAEHLLRLFVKLPELLVHAKI----EE------ETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 262 ~iYG~~HLLRLfvkLP~ll~~t~~----d~------~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
+-.|..=+.|||..-|++....+. +. .....++..+..++..|++-...+.+||..|-.
T Consensus 22 ~~~g~~~~~rlF~~~P~~~~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~ 90 (142)
T 3d1k_A 22 DAIGNDALSRMIVVYPQTKIYFSHWPDVTPGSPNIKAHGKKVMGGIALAVSKIDDLKTGLMELSEQHAY 90 (142)
T ss_dssp HHHHHHHHHHHHHHSGGGGGGGTTSSCCSTTCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 567788888888888887766442 11 233456667777777776644466666766654
No 140
>1q1f_A Neuroglobin; globin fold, heme protein, oxygen storage/transport complex; HET: HEM; 1.50A {Mus musculus} SCOP: a.1.1.2 PDB: 1w92_A* 3gk9_A* 2vry_A* 3gkt_A* 3gln_A* 1oj6_A*
Probab=23.08 E-value=63 Score=25.74 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=34.3
Q ss_pred cccChHHHHHHhhhhhhhhhcCCCC-----H-----------HHHHHHHHHHHHHHHHHHhc---cchhhhhhhhhh
Q 020442 262 SVYGAEHLLRLFVKLPELLVHAKIE-----E-----------ETLTLLQHKLVDLLKHCIGF---LSYVPKLLLSFG 319 (326)
Q Consensus 262 ~iYG~~HLLRLfvkLP~ll~~t~~d-----~-----------~si~~l~~~l~~fL~fL~~n---~e~f~~~~~~~~ 319 (326)
+.+|..=+.|||..-|++....+.. . .....++..+..++..|++- ...+.+||..|-
T Consensus 21 ~~~g~~~y~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~l~~~H~ 97 (151)
T 1q1f_A 21 LEHGTVLFARLFALEPSLLPLFQYNGRQFSSPEDSLSSPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLTSLGRKHR 97 (151)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGCCBTTBCCSSHHHHTTCHHHHHHHHHHHHHHHHHHHTSSCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHChHHHHhCCccccccccHHHHhhChHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4567888889999989888776543 0 12234444555555555443 335555665554
No 141
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=22.86 E-value=57 Score=26.34 Aligned_cols=59 Identities=25% Similarity=0.194 Sum_probs=40.0
Q ss_pred cccChHHHHHHhhhhhhhhhcCC----CCH----------HHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 262 SVYGAEHLLRLFVKLPELLVHAK----IEE----------ETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 262 ~iYG~~HLLRLfvkLP~ll~~t~----~d~----------~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
+..|..=+.|||..-|++....+ ++. .....++..+..++.-|++-...+.+||..|-.
T Consensus 19 ~~~g~~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~~~l~~L~~~H~~ 91 (147)
T 2nrl_A 19 TTIGGLVLTRLFKEHPETQKLFPKFAGIAQADIAGNAAVSAHGATVLKKLGELLKAKGSHAAILKPLANSHAT 91 (147)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTCTTTTTCCGGGTTTCHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHhHHHHhhhhcCCCHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 56788889999999999887653 332 234556666666766666544566677777654
No 142
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=22.06 E-value=1.9e+02 Score=25.88 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhhccC--CchhhhHHHHHHHHHHHHhhhcCcccCChhhHhhHHHhhhcCCCCCcccChHHHHHHhhhhh
Q 020442 200 VDDILEKYCDYRSKKD--GLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLP 277 (326)
Q Consensus 200 V~~IL~~Y~~~~~~~~--~~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~QY~~~l~~~~~pS~iYG~~HLLRLfvkLP 277 (326)
|.++|-.++...-... ....+.+.++...|...+-....- -|-..|+.--......-..-.+-+|..=+.|||..-|
T Consensus 101 ~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~ia~~l~~~y~m-~lt~~~~~~v~~sw~~v~~~~~~~g~~~~~rlF~~~P 179 (283)
T 1c7c_A 101 LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYRG-VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFP 179 (283)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHCh
Confidence 4555555554432111 223345666666666666665553 3677776644332211011247789999999999999
Q ss_pred hhhhcCCC---C---H---HHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 278 ELLVHAKI---E---E---ETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 278 ~ll~~t~~---d---~---~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
++....+- + + .....+...+..++..|++-...+.+||..|-.
T Consensus 180 ~~~~~F~~fd~~~~n~~~~~h~~~v~~al~~~v~~lddl~~~l~~L~~~H~~ 231 (283)
T 1c7c_A 180 TTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAH 231 (283)
T ss_dssp GGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTTSHHHHTHHHHHHHHH
T ss_pred hHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 98876552 1 1 333557777777777777655577777777755
No 143
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=21.70 E-value=77 Score=25.24 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=42.1
Q ss_pred cccChHHHHHHhhhhhhhhhcCCC---CH------HHHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Q 020442 262 SVYGAEHLLRLFVKLPELLVHAKI---EE------ETLTLLQHKLVDLLKHCIGFLSYVPKLLLSFGR 320 (326)
Q Consensus 262 ~iYG~~HLLRLfvkLP~ll~~t~~---d~------~si~~l~~~l~~fL~fL~~n~e~f~~~~~~~~~ 320 (326)
+.+|..=+.|||..-|++....+. +. .....++..+..++..|++-...+.+||..|-.
T Consensus 22 ~~~g~~~~~rlF~~~P~~k~~F~~~~~~~~s~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~ 89 (141)
T 1wmu_A 22 EDFGAEALERMFIVYPSTKTYFPHFDLHHDSEQIRHHGKKVVGALGDAVKHIDNLSATLSELSNLHAY 89 (141)
T ss_dssp HHHHHHHHHHHHHHSGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTTSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCccHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 668889999999999998776542 21 334567777777777777655567777777655
No 144
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=21.54 E-value=75 Score=27.20 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=23.1
Q ss_pred eCCeeEEEEEEcCCCCCcceeeccccc
Q 020442 77 RLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (326)
Q Consensus 77 ~~~~~~Y~VHY~GWn~r~DEWV~~~rl 103 (326)
..+...|+|-+.|+...-.-|-+++.|
T Consensus 137 ~~~~~~YLVKWkgl~y~e~TWE~~~~~ 163 (177)
T 2h1e_A 137 GTSQLQYLVKWRRLNYDEATWENATDI 163 (177)
T ss_dssp SCEEEEEEEEETTSCSTTCEEEEHHHH
T ss_pred CCCcEEEEEEeCCCCcccccccChHHh
Confidence 467889999999999888889998765
No 145
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=21.28 E-value=54 Score=26.48 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=34.8
Q ss_pred cccChHHHHHHhhhhhhhhhcCCC--CH-----------HHHHHHHHHHHHHHHHHHh---ccchhhhhhhhhhh
Q 020442 262 SVYGAEHLLRLFVKLPELLVHAKI--EE-----------ETLTLLQHKLVDLLKHCIG---FLSYVPKLLLSFGR 320 (326)
Q Consensus 262 ~iYG~~HLLRLfvkLP~ll~~t~~--d~-----------~si~~l~~~l~~fL~fL~~---n~e~f~~~~~~~~~ 320 (326)
+.+|..-+.|||..-|++....+. +. .....+...+..++.-|++ -...+.+||..|-.
T Consensus 31 ~~~g~~~~~rlF~~~P~~k~~F~~f~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~ 105 (146)
T 1it2_A 31 EQYSLNILLRFLKCFPQAQASFPKFSTKKSNLEQDPEVKHQAVVIFNKVNEIINSMDNQEEIIKSLKDLSQKHKT 105 (146)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGCTTTTTCCSCGGGCHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhh
Confidence 567888888888888887776543 11 2234455555555555544 33345555655543
No 146
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=20.36 E-value=59 Score=25.87 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=34.0
Q ss_pred CcccChHHHHHHhhhhhhhhhcCCC----C------HHHHHHHHHHHHHHHHHHHh---ccchhhhhhhhhh
Q 020442 261 SSVYGAEHLLRLFVKLPELLVHAKI----E------EETLTLLQHKLVDLLKHCIG---FLSYVPKLLLSFG 319 (326)
Q Consensus 261 S~iYG~~HLLRLfvkLP~ll~~t~~----d------~~si~~l~~~l~~fL~fL~~---n~e~f~~~~~~~~ 319 (326)
.+.+|..=+.|||..-|++....+. + ......++..+..++..|++ -...+.+||..|-
T Consensus 24 ~~~~g~~~~~~lF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~~H~ 95 (140)
T 1x9f_D 24 RVAFGLELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHV 95 (140)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3556777888888888887765432 1 22334455556666665554 2234555555554
No 147
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=20.09 E-value=1.4e+02 Score=25.07 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=28.7
Q ss_pred CCcCCCCEEEEEeCC-eeeeeEEEEEEeeCCeeEEEEEE
Q 020442 50 CPYQVNEKVLAFFQS-HVYEAKVIQVQYRLKEWTFRVHY 87 (326)
Q Consensus 50 ~~f~vge~vl~~~~~-~~YeAkIl~~~~~~~~~~Y~VHY 87 (326)
..|.+||.|.+..|+ .-++|.|.++...++...-.|.-
T Consensus 126 ~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~i 164 (181)
T 2jvv_A 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSI 164 (181)
T ss_dssp CCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEE
T ss_pred ccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEE
Confidence 369999999999998 46999999998665444334444
Done!