BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020444
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74507|YJD4_SCHPO Uncharacterized protein C594.04c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC594.04c PE=3 SV=2
Length = 344
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 141/295 (47%), Gaps = 41/295 (13%)
Query: 49 HPLLLANLLFFFNVNVLFWIISLIQNSNWMIDLYWTVIPVMLVHFFATHPLSLG-QYNHW 107
+P ++ LL F NVL W +S+ + +D W ++P F+ H L G YN
Sbjct: 51 NPFVVGLLLSFILGNVL-WGVSVWTKNTSQVDRLWPILPTA----FSLHFLFYGLGYNIA 105
Query: 108 RSKVVIA--LTWVWSLRLSHNYMRREKWQWGAREDWRFNDMRSQYGKHWWWVSF--FAVY 163
+++I L +WS RL++NY R+ + GA ED+R+ +R Q W + F F ++
Sbjct: 106 SRRLMIMAFLQTLWSARLTYNYYRKGGYNRGA-EDYRWVRVR-QIMPKWIYPLFHYFYIH 163
Query: 164 LSQQVFLIGVCLPFYV--VHSVDKPLSIWDFVAVLVCLSGIVIACCADTQL-HQFVSRN- 219
+ Q + L + P Y+ + ++ WD++A+ + + V+ AD Q + +RN
Sbjct: 164 IFQVLHLYLLASPTYIAMLAGNERAFGAWDWIALELFMFMFVLEMLADQQQWDYYEARNH 223
Query: 220 ----EKLKELGKPVVLNLDR-----GLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWTAV 270
+ + K +L+L R GL+ +SRHPN+ EQL W LS+ L G A
Sbjct: 224 YNVDKTVPPRFKYDLLSLGRGFNATGLFRWSRHPNFLAEQLIW-----LSFYL-FGAIAS 277
Query: 271 GSLINSMCLAYVTIL--------VEERMVKQEHRAEAYRLYQKTTSVWVPWFKSS 317
SL+N A++ ++ + E+M +++ YR+YQ + P S
Sbjct: 278 ESLLNWTIFAWLGLVGVFQGSTRLTEKMSCEKY--PLYRVYQDKVGRFFPRLDGS 330
>sp|Q3U9G9|LBR_MOUSE Lamin-B receptor OS=Mus musculus GN=Lbr PE=1 SV=2
Length = 626
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 22/118 (18%)
Query: 190 WDFVAVLVCLS--GIVIACCADTQLHQFVSR--NEKLKEL-------GKPVVLNLDRGLW 238
W +V++ L G VI CA++Q + F + KL L GK ++++ G W
Sbjct: 495 WPLASVIIALKLCGYVIFRCANSQKNAFRKNPTDPKLAHLKTIHTSTGKSLLVS---GWW 551
Query: 239 YYSRHPNYFGEQLWWWGLVVLSWSLGHGWTAVGSLINSMCLAYVTILVEERMVKQEHR 296
+ RHPNY G+ ++ L+WSL G+ L+ + Y T L+ R + EH+
Sbjct: 552 GFVRHPNYLGDL-----IMALAWSLPCGFN---HLLPYFYIIYFTALLIHREARDEHQ 601
>sp|O08984|LBR_RAT Lamin-B receptor OS=Rattus norvegicus GN=Lbr PE=1 SV=1
Length = 620
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 190 WDFVAVLVCLS--GIVIACCADTQLHQFVSR--NEKLKELGKPVVLN-----LDRGLWYY 240
W +V++ L G VI CA++Q + F + KL L K + + L G W +
Sbjct: 489 WPLTSVIIALKLCGYVIFRCANSQKNAFRKNPTDPKLAHL-KTIPTSTWKSLLVSGWWGF 547
Query: 241 SRHPNYFGEQLWWWGLVVLSWSLGHGWTAVGSLINSMCLAYVTILVEERMVKQEHR 296
RHPNY G+ ++ L+WSL G+ + + + Y T L+ R + EH+
Sbjct: 548 VRHPNYLGDL-----IMALAWSLPCGFNHI---LPYFYVIYFTALLIHREARDEHQ 595
>sp|Q38944|DET2_ARATH Steroid 5-alpha-reductase DET2 OS=Arabidopsis thaliana GN=DET2 PE=1
SV=2
Length = 262
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 190 WDFV-AVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWY-YSRHPNYF 247
W FV ++V ++G+ I +D L + N G V+ RG W+ PNYF
Sbjct: 151 WRFVIGMVVFITGMYINITSDRTLVRLKKENR-----GGYVI---PRGGWFELVSCPNYF 202
Query: 248 GEQLWWWGLVVLSWSLGHGWTAVGSLINSMCLAYVTILVEERMVKQEHRAEAYRLYQKTT 307
GE + W G V++WS W +G + + + R + + A+ Y KT
Sbjct: 203 GEAIEWLGWAVMTWS----WAGIGFFLYTCS----NLFPRARASHKWYIAKFKEEYPKTR 254
Query: 308 SVWVPW 313
+P+
Sbjct: 255 KAVIPF 260
>sp|Q68FF9|S5A1_MOUSE 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Mus musculus GN=Srd5a1
PE=2 SV=2
Length = 255
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 236 GLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWTAVGSLINSMCLAYVTILVEERMVKQEH 295
GL+ Y NYFGE + W G + SWSL + A T+ +Q H
Sbjct: 185 GLFEYVSSANYFGELVEWCGFALASWSL-----------QGVVFALFTLCALFTRARQHH 233
Query: 296 R--AEAYRLYQKTTSVWVPW 313
+ E + Y KT + +P+
Sbjct: 234 QWYLEKFEDYPKTRKILIPF 253
>sp|P24008|S5A1_RAT 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Rattus norvegicus
GN=Srd5a1 PE=1 SV=2
Length = 259
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 20/117 (17%)
Query: 199 LSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVV 258
L G+VI +D L E ++ + GL+ Y NYFGE + W G +
Sbjct: 159 LVGMVINIHSDHILRNLRKPGETGYKIPR-------GGLFEYVSAANYFGELVEWCGFAL 211
Query: 259 LSWSLGHGWTAVGSLINSMCLAYVTILVEERMVKQEHR--AEAYRLYQKTTSVWVPW 313
SWSL + A T+ KQ H+ E + Y K+ + +P+
Sbjct: 212 ASWSL-----------QGVVFALFTLSTLLTRAKQHHQWYHEKFEDYPKSRKILIPF 257
>sp|Q09195|ERG24_SCHPO Delta(14)-sterol reductase OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=erg24 PE=2 SV=1
Length = 424
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 181 HSVDKPLSIWDFVAVLVCLS--GIVIACCADTQLHQFVSR--NEKLKELG----KPVVLN 232
H VD L + +A+L CL G I A+ Q ++F S + KLK L K
Sbjct: 287 HPVD--LGLVKTLAIL-CLQFLGYYIFRGANGQKNRFRSNPNDPKLKHLKFIQTKRGTKL 343
Query: 233 LDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWTAVGSLINSMCLAYVTILVEERMVK 292
L G W +RH NYFG+ + W +W L G+ GS I +AY +L+ R +
Sbjct: 344 LTSGWWGMARHINYFGDWIMAW-----AWCLPAGF---GSPIPYFYVAYFGVLLVHRNAR 395
Query: 293 QEHRAE 298
+H+
Sbjct: 396 DDHKCR 401
>sp|Q9LDR4|ERG24_ARATH Delta(14)-sterol reductase OS=Arabidopsis thaliana GN=FK PE=1 SV=2
Length = 369
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 193 VAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLN----LDRGLWYYSRHPNYFG 248
V LV L G ++ A+ Q H F +N K GKP V+ L G W +RH NY G
Sbjct: 246 VNCLVFLIGYMVFRGANKQKHIF-KKNPKTPIWGKPPVVVGGKLLVSGYWGIARHCNYLG 304
Query: 249 EQLWWWGLVVLSWSLGHGWTAVGSLINSMCLAYVTILVEERMVKQEHR-AEAYRLYQKTT 307
+ ++ LS+SL G + S + Y+ IL+ R + E R AE Y+
Sbjct: 305 DL-----MLALSFSLPCG---ISSPVPYFYPIYLLILLIWRERRDEVRCAEKYKEIWAEY 356
Query: 308 SVWVPW 313
VPW
Sbjct: 357 LRLVPW 362
>sp|Q558K8|ICMT_DICDI Protein-S-isoprenylcysteine O-methyltransferase OS=Dictyostelium
discoideum GN=icmt-1 PE=2 SV=2
Length = 237
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 185 KPLSIWDFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHP 244
K S+W A+ + IV + DT F ++ K +V N G++ Y RHP
Sbjct: 114 KTFSLWWVGAICMVFGQIVRSVAMDTAGSNFTHLVQEEKRDDHVLVTN---GIYQYMRHP 170
Query: 245 NYFGEQLW 252
+YFG +W
Sbjct: 171 SYFGWFVW 178
>sp|Q5R7H4|LBR_PONAB Lamin-B receptor OS=Pongo abelii GN=LBR PE=2 SV=1
Length = 615
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 22/117 (18%)
Query: 190 WDFVAVLVCLS--GIVIACCADTQLHQFVSR--NEKLKEL-------GKPVVLNLDRGLW 238
W ++++ L G VI A++Q + F + KL L GK ++++ G W
Sbjct: 484 WPMASLIIVLKFCGYVIFRGANSQKNAFRKNPSDPKLAHLKTIHTSTGKNLLVS---GWW 540
Query: 239 YYSRHPNYFGEQLWWWGLVVLSWSLGHGWTAVGSLINSMCLAYVTILVEERMVKQEH 295
++RHPNY G+ ++ L+WSL G+ + + + Y T+L+ R + E+
Sbjct: 541 GFARHPNYLGDL-----IMALAWSLACGFNHI---LPYFYIIYFTMLLVHREARDEY 589
>sp|A5PJS2|S5A1_BOVIN 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Bos taurus GN=SRD5A1
PE=2 SV=1
Length = 257
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 236 GLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWTAVGSLINSMCLAYVTILVEERMVKQEH 295
GL+ Y NYFGE + W G + SWS+ GW A T V +Q H
Sbjct: 187 GLFEYISAANYFGEVVEWCGYALASWSI-QGWA----------FAVFTFCVLFTRAQQHH 235
Query: 296 R--AEAYRLYQKTTSVWVPW 313
+ E + Y K + +P+
Sbjct: 236 KWYHEKFEDYPKFRKIMIPF 255
>sp|P23913|LBR_CHICK Lamin-B receptor OS=Gallus gallus GN=LBR PE=1 SV=1
Length = 637
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 27/147 (18%)
Query: 156 WVSFFAVYLSQQVFLIGVCLPFYVVHSVDKPLSIWDFVAVLVCLSGIVIACCADTQLHQF 215
WV F VY Q +L+G H + + + +L C+ G I A++Q + F
Sbjct: 456 WVPF--VYSLQAFYLVG--------HPIAISWPVAAAITILNCI-GYYIFRSANSQKNNF 504
Query: 216 VSRNEKLKELG--KPVVLNLDRGL-----WYYSRHPNYFGEQLWWWGLVVLSWSLGHGWT 268
RN +L K + +GL W + RHPNY G+ ++ L+WSL G+
Sbjct: 505 -RRNPADPKLSYLKVIPTATGKGLLVTGWWGFVRHPNYLGDI-----IMALAWSLPCGFN 558
Query: 269 AVGSLINSMCLAYVTILVEERMVKQEH 295
+ + + Y L+ R + EH
Sbjct: 559 HI---LPYFYVIYFICLLVHREARDEH 582
>sp|P08032|SPTA1_MOUSE Spectrin alpha chain, erythrocytic 1 OS=Mus musculus GN=Spta1 PE=2
SV=3
Length = 2415
Score = 32.0 bits (71), Expect = 5.9, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 211 QLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLW 252
+L QFV EKLKEL K +NL+ L Y N E+ W
Sbjct: 1791 RLAQFVQHWEKLKELAKTRGVNLEESLEYLQFMENAEEEEAW 1832
>sp|Q99N99|S5A2_MOUSE 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Mus musculus GN=Srd5a2
PE=2 SV=1
Length = 254
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 26/160 (16%)
Query: 162 VYLSQQVFLIGVCL--PFYVVHSVDKP----LSIWDFVAVLVCLSGIVIACCADTQLHQF 215
++L F IG L +Y+V+ + P + V V + G+ I +D L Q
Sbjct: 111 IFLKATAFCIGNGLLQAYYLVYCAEYPEEWYTDMRFSVGVFFFILGMGINIHSDCMLRQ- 169
Query: 216 VSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWTAVGSLIN 275
L++ G+ + GL+ Y N+ GE + W G + +WS +
Sbjct: 170 ------LRKPGEVIYRIPQGGLFTYVSGANFLGEIIEWMGYALATWS-----------VP 212
Query: 276 SMCLAYVTILVEERMVKQEHR--AEAYRLYQKTTSVWVPW 313
+ A+ T+ HR + ++ Y K+ +P+
Sbjct: 213 AFAFAFFTLCFLGMQAFYHHRFYLKMFKDYPKSRKALIPF 252
>sp|Q14739|LBR_HUMAN Lamin-B receptor OS=Homo sapiens GN=LBR PE=1 SV=2
Length = 615
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 20/110 (18%)
Query: 195 VLVCLSGIVIACCADTQLHQFVSR--NEKLKEL-------GKPVVLNLDRGLWYYSRHPN 245
+++ L G VI A++Q + F + KL L GK ++++ G W + RHPN
Sbjct: 491 IVLKLCGYVIFRGANSQKNAFRKNPSDPKLAHLKTIHTSTGKNLLVS---GWWGFVRHPN 547
Query: 246 YFGEQLWWWGLVVLSWSLGHGWTAVGSLINSMCLAYVTILVEERMVKQEH 295
Y G+ ++ L+WSL G+ + + + Y T+L+ R + E+
Sbjct: 548 YLGDL-----IMALAWSLPCGFNHI---LPYFYIIYFTMLLVHREARDEY 589
>sp|Q9Z2Z8|DHCR7_RAT 7-dehydrocholesterol reductase OS=Rattus norvegicus GN=Dhcr7 PE=2
SV=1
Length = 471
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 233 LDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWTAVGSLINSMCLAYVTILVEERMVK 292
L G W +RH NY G+ + L++ L G G L+ + Y+TIL+ R ++
Sbjct: 391 LVSGFWGVARHFNYTGDLM-----GSLAYCLACG---GGHLLPYFYIIYMTILLTHRCLR 442
Query: 293 QEHRA 297
EHR
Sbjct: 443 DEHRC 447
>sp|O88455|DHCR7_MOUSE 7-dehydrocholesterol reductase OS=Mus musculus GN=Dhcr7 PE=2 SV=1
Length = 471
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 233 LDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWTAVGSLINSMCLAYVTILVEERMVK 292
L G W +RH NY G+ + L++ L G G L+ + Y+TIL+ R ++
Sbjct: 391 LVSGFWGVARHFNYTGDLM-----GSLAYCLACG---GGHLLPYFYIIYMTILLTHRCLR 442
Query: 293 QEHRA 297
EHR
Sbjct: 443 DEHRC 447
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.138 0.487
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,659,360
Number of Sequences: 539616
Number of extensions: 5220708
Number of successful extensions: 14202
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 14182
Number of HSP's gapped (non-prelim): 42
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)