Query 020444
Match_columns 326
No_of_seqs 319 out of 1356
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:25:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4650 Predicted steroid redu 100.0 4.7E-63 1E-67 442.8 22.1 298 4-326 7-309 (311)
2 COG3752 Steroid 5-alpha reduct 100.0 8.4E-61 1.8E-65 429.9 27.5 250 53-319 17-271 (272)
3 PF06966 DUF1295: Protein of u 100.0 9.8E-57 2.1E-61 413.0 24.9 228 66-307 1-235 (235)
4 PF01222 ERG4_ERG24: Ergostero 99.8 2.8E-20 6E-25 184.5 17.5 139 173-314 284-431 (432)
5 COG2020 STE14 Putative protein 99.8 1.1E-18 2.4E-23 155.4 14.3 119 188-315 67-186 (187)
6 KOG1435 Sterol reductase/lamin 99.8 4.9E-19 1.1E-23 171.2 5.9 135 174-314 282-427 (428)
7 PF04191 PEMT: Phospholipid me 99.6 1.7E-14 3.6E-19 116.2 10.2 103 191-300 3-106 (106)
8 KOG2628 Farnesyl cysteine-carb 99.5 6.4E-14 1.4E-18 122.8 7.9 116 193-315 85-201 (201)
9 PF04140 ICMT: Isoprenylcystei 99.4 4.8E-12 1E-16 100.6 9.8 61 196-260 3-63 (94)
10 PLN02392 probable steroid redu 99.2 2.3E-10 4.9E-15 106.3 10.7 109 189-314 150-259 (260)
11 KOG1638 Steroid reductase [Lip 99.1 6.8E-10 1.5E-14 100.6 9.7 109 189-314 147-256 (257)
12 PF02544 Steroid_dh: 3-oxo-5-a 99.1 1.1E-09 2.5E-14 94.2 10.3 109 189-314 40-149 (150)
13 COG1755 Uncharacterized protei 98.8 5.3E-08 1.2E-12 83.6 12.2 98 186-293 66-167 (172)
14 PLN03164 3-oxo-5-alpha-steroid 98.8 3.2E-08 7E-13 94.1 10.7 113 189-314 209-322 (323)
15 PLN02560 enoyl-CoA reductase 98.8 2.8E-08 6.2E-13 95.0 10.1 115 190-313 193-307 (308)
16 KOG1640 Predicted steroid redu 97.5 0.00081 1.8E-08 63.0 9.5 112 189-314 192-303 (304)
17 PF07298 NnrU: NnrU protein; 96.8 0.015 3.2E-07 52.2 10.7 95 188-309 67-161 (191)
18 KOG1639 Steroid reductase requ 95.5 0.028 6.1E-07 51.9 5.8 71 234-314 225-297 (297)
19 COG4094 Predicted membrane pro 82.9 2.4 5.3E-05 38.1 5.1 74 232-313 98-173 (219)
20 PLN02797 phosphatidyl-N-dimeth 68.5 26 0.00057 30.3 7.2 67 191-260 66-132 (164)
21 COG3162 Predicted membrane pro 60.8 48 0.001 26.6 6.9 62 139-207 11-80 (102)
22 PF04341 DUF485: Protein of un 54.9 74 0.0016 24.8 7.2 62 139-207 3-72 (91)
23 KOG4142 Phospholipid methyltra 53.1 67 0.0014 28.3 7.1 68 191-260 98-165 (208)
24 COG3462 Predicted membrane pro 37.8 88 0.0019 25.6 5.1 21 285-305 89-110 (117)
25 KOG3088 Secretory carrier memb 36.6 76 0.0017 30.3 5.4 71 143-215 188-269 (313)
26 TIGR00026 hi_GC_TIGR00026 deaz 32.8 31 0.00067 28.1 1.9 18 297-314 93-110 (113)
27 PRK12585 putative monovalent c 31.0 4E+02 0.0087 24.0 8.9 28 189-216 4-31 (197)
28 PF15284 PAGK: Phage-encoded v 29.9 48 0.001 24.1 2.3 40 5-46 3-43 (61)
29 PF05653 Mg_trans_NIPA: Magnes 29.7 2.5E+02 0.0055 26.7 7.9 57 191-261 5-62 (300)
30 PF02790 COX2_TM: Cytochrome C 24.5 86 0.0019 23.3 3.0 15 79-93 62-76 (84)
31 PF06454 DUF1084: Protein of u 23.7 6.2E+02 0.014 23.9 9.5 93 9-127 92-191 (281)
32 PF10762 DUF2583: Protein of u 23.7 55 0.0012 25.5 1.7 32 52-83 42-74 (89)
33 COG1133 SbmA ABC-type long-cha 23.6 1.2E+02 0.0025 29.5 4.3 86 160-249 204-311 (405)
34 PRK10692 hypothetical protein; 22.7 59 0.0013 25.5 1.7 31 53-83 43-74 (92)
No 1
>KOG4650 consensus Predicted steroid reductase [General function prediction only]
Probab=100.00 E-value=4.7e-63 Score=442.83 Aligned_cols=298 Identities=36% Similarity=0.580 Sum_probs=260.5
Q ss_pred cccchhhhhhhhchhhHHHHHHHHhhhcccccccCcchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhCCCceEeecc
Q 020444 4 SNLKNAVIALLAPLPSILLHLSLLNHHYDYERQTNQYPIRSWCYHHPLLLANLLFFFNVNVLFWIISLIQNSNWMIDLYW 83 (326)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~n~s~vD~~W 83 (326)
|++.+..+|+.+++|+|.|+.++.....+ .-|. .+|...++.+.++.|++++....++..|++|
T Consensus 7 s~~a~~~vav~~~l~~i~f~~t~l~~~~~---------~tD~-------~ant~~Fvi~~vLt~vlgl~~~s~w~~d~~W 70 (311)
T KOG4650|consen 7 SDAAKWKVAVSVYLQFIFFVITALFKFDQ---------VTDF-------FANTTNFVILAVLTLVLGLWGVSVWTKDRLW 70 (311)
T ss_pred CchhceeeeeeccHHHHHHHHHHHhccch---------HHHH-------HcCCchHHHHHHHHHHHHhccccceecccce
Confidence 78999999999999999999998555432 2232 3344445556677888888888999999999
Q ss_pred chHHHHHHHHHHhcccccCCcCchHHHHHHHHHHHHHHHhhhhHHHhhhccCCCCCCcchHHHHhhccchhhHHHHHHHH
Q 020444 84 TVIPVMLVHFFATHPLSLGQYNHWRSKVVIALTWVWSLRLSHNYMRREKWQWGAREDWRFNDMRSQYGKHWWWVSFFAVY 163 (326)
Q Consensus 84 s~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~v~~W~~RL~~~l~~R~~~~~~~~eD~Ry~~~r~~~~~~~~~~~f~~i~ 163 (326)
.++|++..++++.+++ .+..+.|+.+++.++++||+|||+|++||+.++|| .||+||+++|++.||++|+++||.+|
T Consensus 71 ~ilp~~~~~~f~~~~l--~n~~~~R~mIl~~L~~vWs~RLt~ny~rr~~~~wG-~ED~Rf~d~R~~~gK~~~~~~~f~~~ 147 (311)
T KOG4650|consen 71 HILPTAFSLHFLFYGL--YNIASRRQMILTFLVVVWSLRLTYNYLRRGILQWG-AEDRRFDDVRQNIGKWIYLFHLFYFW 147 (311)
T ss_pred eechHHHHHHHhhcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-chhhhHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999987 66777899999999999999999999999999998 69999999999999998899999999
Q ss_pred HHhHHHHHHHHHHHHHHhhCCCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccccccc
Q 020444 164 LSQQVFLIGVCLPFYVVHSVDKP--LSIWDFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYS 241 (326)
Q Consensus 164 ~~Q~~l~~~~~lP~~~~~~~~~~--~~~~~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~s 241 (326)
++|+++++.+|+|+|+++..+++ ++++|++|..+++.|+++|..||.|+..|+..+.+.+++||+ .|++|+||||
T Consensus 148 ifQ~v~l~~v~lPlyiv~~~d~~r~f~~wD~I~~~m~~~gfvie~~ADqQ~~~f~~~~~~l~~~Gk~---~~d~GlwryS 224 (311)
T KOG4650|consen 148 IFQAVWLWTVSLPLYIVNASDGGRAFGPWDVIGWTMWVFGFVIEALADQQKLSFKEARYDLENLGKG---WCDVGLWRYS 224 (311)
T ss_pred HHHHHHHHHhhcchheeeecCCccccChHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhcCHHHcCCc---cccccceeec
Confidence 99999999999999999987665 999999999999999999999999999999776666778884 9999999999
Q ss_pred cCchhHHHHHHHHHHHHHHhhhhhh--hHHHHHHHHHHHHHHhchHHHHHHHHhccCchHHHHHHhhcCcccc-cCCCCC
Q 020444 242 RHPNYFGEQLWWWGLVVLSWSLGHG--WTAVGSLINSMCLAYVTILVEERMVKQEHRAEAYRLYQKTTSVWVP-WFKSSA 318 (326)
Q Consensus 242 RHPNY~Ge~l~w~g~~l~~~~~~~~--w~~~~~l~~~~ll~~~~~~~E~~~l~k~g~~~~Y~~Y~~~t~~fIP-~~~~~~ 318 (326)
|||||+||+++|||+++++.+.+.+ |++++.+....++...+...|+.+.+|+ ++|+.|||+|++||| ++|..-
T Consensus 225 RHPNylgEqL~Wwglyvfa~~~~egl~wtvi~~lv~~~~l~~~t~lie~~~v~~~---~aYR~Yqktts~~ip~~f~sh~ 301 (311)
T KOG4650|consen 225 RHPNYLGEQLLWWGLYVFAAPVLEGLEWTVIAGLVFLTLLLLFTSLIELLEVEKY---PAYRVYQKTTSRFIPRLFPSHW 301 (311)
T ss_pred cCccHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHhhhhhhhhhhh---HHHHHHHhcccccccccchhhH
Confidence 9999999999999999999877665 8888777777777777888898888764 899999999999999 777766
Q ss_pred cccccCCC
Q 020444 319 VAEKYKST 326 (326)
Q Consensus 319 ~~~~~~~~ 326 (326)
..-+++++
T Consensus 302 d~~~d~~t 309 (311)
T KOG4650|consen 302 DNVDDDAT 309 (311)
T ss_pred hcCCcccc
Confidence 66666654
No 2
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=100.00 E-value=8.4e-61 Score=429.85 Aligned_cols=250 Identities=30% Similarity=0.525 Sum_probs=220.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEeeccchHHHHHHHHHHhcccccCCcCchHHHHHHHHHHHHHHHhhhhHHHhhh
Q 020444 53 LANLLFFFNVNVLFWIISLIQNSNWMIDLYWTVIPVMLVHFFATHPLSLGQYNHWRSKVVIALTWVWSLRLSHNYMRREK 132 (326)
Q Consensus 53 ~~~~~~~~~~~~~~~~~s~~~~n~s~vD~~Ws~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~v~~W~~RL~~~l~~R~~ 132 (326)
..++++.+..+.+.|++|.++||+|+||+.|+.++++++...+.. +.+++.|+.+++.++++||+||+.|+.||+
T Consensus 17 ~v~al~~~v~~~~~w~vs~~tg~~~~VD~~Wg~~~~~~a~~~~l~----~~~~~~r~~l~~~LvtlWs~RL~~hl~rR~- 91 (272)
T COG3752 17 VVVALALAVLFAVAWAVSRRTGNYSWVDAVWGGGFVAVAVVLALL----GEGDPRRRWLLLFLVTLWSLRLGWHLYRRT- 91 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcceeehhccchHHHHHHHHHHH----cCCchHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 446667888889999999999999999999999999877665554 445668999999999999999999999996
Q ss_pred ccCCCCCCcchHHHHhhccchh-hHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 020444 133 WQWGAREDWRFNDMRSQYGKHW-WWVSFFAVYLSQQVFLIGVCLPFYVVHSV-DKPLSIWDFVAVLVCLSGIVIACCADT 210 (326)
Q Consensus 133 ~~~~~~eD~Ry~~~r~~~~~~~-~~~~f~~i~~~Q~~l~~~~~lP~~~~~~~-~~~~~~~~~ig~~l~~~G~~le~~Ad~ 210 (326)
++++||+||.+||+++|+.. +.++||.++.+|+++.+++++|++.+... +.+++++|++|++++++|+++|.++|.
T Consensus 92 --~~~geD~RY~~l~~~wg~t~~~~~~l~~vf~lQ~ll~~ilalpi~~a~~~~~~~~~~~d~~g~~iwivg~~fE~lgD~ 169 (272)
T COG3752 92 --RGKGEDPRYVNLRQRWGKTIYPLKALFIVFGLQALLLFILALPIYLAALNGPREFGWWDVIGLAIWIVGIVFEALGDA 169 (272)
T ss_pred --cCCCCChHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHhhHH
Confidence 56779999999999999754 35789999999999999999999988754 556899999999999999999999999
Q ss_pred HHHHhccccccccccCCcccccccccccccccCchhHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHhc--hHHH
Q 020444 211 QLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLG-HGWTAVGSLINSMCLAYVT--ILVE 287 (326)
Q Consensus 211 Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~~~~~-~~w~~~~~l~~~~ll~~~~--~~~E 287 (326)
|+..||++|++ +|| +|++|+||+|||||||||+|+|||+++++.+.. ..|++.+|+.++.++.+++ +..|
T Consensus 170 QL~~Fk~~P~n---kgk----ll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~~~~~W~~~sPllmt~LL~~vSGvp~l~ 242 (272)
T COG3752 170 QLWVFKKDPRN---KGK----LLDTGLWRWTRHPNYFGEALVWWGFYLIAISEWLLLWAVASPLLMTWLLVHVSGVPPLE 242 (272)
T ss_pred HHHHHHhChhh---ccc----cccccceecccCcchHHHHHHHHHHHHHHHhhhhHhhhcccHHHHHHHHHHhcCCChHH
Confidence 99999998765 688 999999999999999999999999999987543 2488899999999999987 4567
Q ss_pred HHHHHhccCchHHHHHHhhcCcccccCCCCCc
Q 020444 288 ERMVKQEHRAEAYRLYQKTTSVWVPWFKSSAV 319 (326)
Q Consensus 288 ~~~l~k~g~~~~Y~~Y~~~t~~fIP~~~~~~~ 319 (326)
|+|++. | |+|+|||+||++|+|++||+..
T Consensus 243 ekm~k~--r-~~fr~Yq~rt~~F~P~~~k~~~ 271 (272)
T COG3752 243 EKMLKS--R-PGFREYQRRTNAFFPRPPKKAL 271 (272)
T ss_pred HHHhcc--c-HhHHHHHHHhcccCCCCCcccC
Confidence 888763 4 9999999999999999999753
No 3
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=100.00 E-value=9.8e-57 Score=412.99 Aligned_cols=228 Identities=37% Similarity=0.734 Sum_probs=203.4
Q ss_pred HHHHHHHhCCCceEeeccchHHHHHHHHHHhcccccCCcCchHHHHHHHHHHHHHHHhhhhHHHhhhccCCCCCCcchHH
Q 020444 66 FWIISLIQNSNWMIDLYWTVIPVMLVHFFATHPLSLGQYNHWRSKVVIALTWVWSLRLSHNYMRREKWQWGAREDWRFND 145 (326)
Q Consensus 66 ~~~~s~~~~n~s~vD~~Ws~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~v~~W~~RL~~~l~~R~~~~~~~~eD~Ry~~ 145 (326)
+|++|..++|+|+||.+||++|++++.+++.. ++..+.|+.++++++++||+||+.|+++|. .+.+||+||++
T Consensus 1 ~w~~s~~~~n~s~vD~~ws~~~~~~a~~~~~~----~~~~~~r~~lv~~lv~~W~~RL~~~l~~R~---~~~~eD~R~~~ 73 (235)
T PF06966_consen 1 FWIISLATRNESIVDILWSFGFVLVAWVYALF----SDGFSPRQLLVAALVIVWGLRLGYFLFRRN---LGWGEDWRYDD 73 (235)
T ss_pred CeeehHhhCCCCEEECcccHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCchhHHH
Confidence 47899999999999999999999988777665 335778999999999999999999999995 35569999999
Q ss_pred HHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHhhC--CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 020444 146 MRSQYGKHWWWVSFFAVYLSQQVFLIGVCLPFYVVHSV--DKPLSIWDFVAVLVCLSGIVIACCADTQLHQFVSRNEKLK 223 (326)
Q Consensus 146 ~r~~~~~~~~~~~f~~i~~~Q~~l~~~~~lP~~~~~~~--~~~~~~~~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~ 223 (326)
+|+++++.++..+|+.+|++|+++++++++|+++++.. ..+++..|++|++++++|+++|++||.||++||+++.+
T Consensus 74 ~r~~~~~~~~~~~~~~~~~~q~~~~~~~~lP~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~E~~AD~Q~~~fk~~~~n-- 151 (235)
T PF06966_consen 74 LRKKWGEWFWPFSFFFIFLFQALLVWLISLPVYLANSSPPNPPLNWLDILGIALFLIGFLLETVADQQKYRFKKDPAN-- 151 (235)
T ss_pred HHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc--
Confidence 99999887777789999999999999999999988763 35688999999999999999999999999999987654
Q ss_pred ccCCcccccccccccccccCchhHHHHHHHHHHHHHHhhhhhh---hHHHHHHHHHHHHHHhc--hHHHHHHHHhccCch
Q 020444 224 ELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHG---WTAVGSLINSMCLAYVT--ILVEERMVKQEHRAE 298 (326)
Q Consensus 224 ~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~~~~~~~---w~~~~~l~~~~ll~~~~--~~~E~~~l~k~g~~~ 298 (326)
+|+ +|++|+|+||||||||||+++|+|+++++.+.... |++++|+++++++.+++ +..|+++.+|||+.|
T Consensus 152 -~g~----~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~~~~~~~~~~~~pl~~~~~l~~~sgip~~E~~~~~kyg~~~ 226 (235)
T PF06966_consen 152 -KGK----FCTTGLWRYSRHPNYFGEILFWWGIYLAAISSGSGWLWWAIIGPLFMTLLLLFVSGIPLLEKRMAKKYGDRP 226 (235)
T ss_pred -CCc----cccCCeeeeeeCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCH
Confidence 577 99999999999999999999999999998765432 67899999888887765 689999999998889
Q ss_pred HHHHHHhhc
Q 020444 299 AYRLYQKTT 307 (326)
Q Consensus 299 ~Y~~Y~~~t 307 (326)
+|+||||+|
T Consensus 227 ~Y~~Y~~~t 235 (235)
T PF06966_consen 227 AYQEYQRRT 235 (235)
T ss_pred hHHHHHhcC
Confidence 999999997
No 4
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=99.85 E-value=2.8e-20 Score=184.50 Aligned_cols=139 Identities=20% Similarity=0.142 Sum_probs=108.1
Q ss_pred HHHHHHHHhhCCCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHhccccccccc------cCCcccccccccccccccCc
Q 020444 173 VCLPFYVVHSVDKPLSIW--DFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKE------LGKPVVLNLDRGLWYYSRHP 244 (326)
Q Consensus 173 ~~lP~~~~~~~~~~~~~~--~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~------~gk~~~~lit~Glw~~sRHP 244 (326)
.+++......+|..+++. ...-.++.++|+.+...||.||.+||++|++.+- +.+..++++++|.|+++|||
T Consensus 284 Yt~~~~yl~~~p~~l~~~~~~~~i~~l~~~gy~i~r~sn~QK~~FR~~p~~p~~~~~~~~~t~~G~~LL~SGwWg~~Rh~ 363 (432)
T PF01222_consen 284 YTLQARYLVDHPVELSWPTYAAAILALGLVGYYIFRGSNSQKNRFRRNPKDPKVIHLKYIPTKRGSKLLVSGWWGIARHP 363 (432)
T ss_pred hhcceeEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhchhHHHhcCCCCCCcccccceeecCCCCeEEEcChhHhhccc
Confidence 344443333445556665 3334677899999999999999999976543210 11112369999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhchHHHHHHHHhccCchHHHHHHhhcC-cccccC
Q 020444 245 NYFGEQLWWWGLVVLSWSLGHGWTAVGSLINSMCLAYVTILVEERMVKQEHRAEAYRLYQKTTS-VWVPWF 314 (326)
Q Consensus 245 NY~Ge~l~w~g~~l~~~~~~~~w~~~~~l~~~~ll~~~~~~~E~~~l~k~g~~~~Y~~Y~~~t~-~fIP~~ 314 (326)
||+||+++.+++++.+. ..+......|+++++++.++..++|+++.+||| ++|+|||++|| ++||++
T Consensus 364 NY~gdil~a~aw~l~~g-f~~~~pyfy~~~~~~lL~hR~~RD~~rC~~KYG--~~W~~Yc~~Vpy~~iP~i 431 (432)
T PF01222_consen 364 NYLGDILMALAWCLPCG-FSSILPYFYPIFFTILLIHRARRDEERCRKKYG--KDWDEYCKRVPYRIIPGI 431 (432)
T ss_pred chHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHhhhHHHHHHHHHHhhC--HHHHHHHHhCCEEEeCCc
Confidence 99999999999988764 344567889999999999988899999999995 89999999998 999985
No 5
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.1e-18 Score=155.41 Aligned_cols=119 Identities=20% Similarity=0.206 Sum_probs=89.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccccccccCchhHHHHHHHHHHHHHHhhhhhhh
Q 020444 188 SIWDFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGW 267 (326)
Q Consensus 188 ~~~~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~~~~~~~w 267 (326)
.+...+|+.+..+|..+..++..++.+......+.++.+ +++++|+|+++|||.|+|..++.+|..+.. ++.|
T Consensus 67 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~---~~~~ 139 (187)
T COG2020 67 SWIVGLGLLLVGLGLALRLWAMRTLGRSWTVSVKARKGH----ELVTTGPYSIVRHPIYLGLLLFALGTGLLL---GSLW 139 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCCCCCC----eeEecCCcceecCcHHHHHHHHHHHHHHHH---HhHH
Confidence 456788999999999999999999987643322222233 399999999999999999999999998664 3445
Q ss_pred HHHHHHHHHHHH-HHhchHHHHHHHHhccCchHHHHHHhhcCcccccCC
Q 020444 268 TAVGSLINSMCL-AYVTILVEERMVKQEHRAEAYRLYQKTTSVWVPWFK 315 (326)
Q Consensus 268 ~~~~~l~~~~ll-~~~~~~~E~~~l~k~g~~~~Y~~Y~~~t~~fIP~~~ 315 (326)
.+++.+.....+ .+.+..||+.+.+++ +++|+||++||+|+||++.
T Consensus 140 ~l~~~~~~~~~~~~~~i~~EEr~L~~~f--g~~Y~~Y~~rV~r~iP~~~ 186 (187)
T COG2020 140 ALLIFVVLVALLFLFRIREEERYLRAEF--GDEYREYRKRVPRLIPPLV 186 (187)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHh--hHHHHHHHHhCCccCCCCC
Confidence 555554444444 344456666666775 6899999999999999864
No 6
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.76 E-value=4.9e-19 Score=171.15 Aligned_cols=135 Identities=20% Similarity=0.200 Sum_probs=108.6
Q ss_pred HHHHHHHhhCCCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccccc---------ccCCcccccccccccccccC
Q 020444 174 CLPFYVVHSVDKPLSIWDFVA-VLVCLSGIVIACCADTQLHQFVSRNEKLK---------ELGKPVVLNLDRGLWYYSRH 243 (326)
Q Consensus 174 ~lP~~~~~~~~~~~~~~~~ig-~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~---------~~gk~~~~lit~Glw~~sRH 243 (326)
++|......+|.++++....+ .++.+.|+.+...||.||..||+++.+.+ .+| +++++||.|+++||
T Consensus 282 t~~~~yL~~hpv~l~~~~a~~i~~l~l~gyyifr~an~QK~~FRkn~~~~~~~~i~~i~t~~G---s~LL~SGwWG~aRh 358 (428)
T KOG1435|consen 282 TLQALYLVSHPVELGWPMAVGILVLLLLGYYIFRGANAQKNEFRKNPGDPKLKNIKTIYTSTG---SKLLVSGWWGVARH 358 (428)
T ss_pred ecceeeEEECccccchHHHHHHHHHHHhheeEeeccchhHHHHhcCCCCCccccccceEeccC---CeEEeechhhhhcC
Confidence 344433344577888765555 56778999999999999999998743321 122 36999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhchHHHHHHHHhccCchHHHHHHhhcC-cccccC
Q 020444 244 PNYFGEQLWWWGLVVLSWSLGHGWTAVGSLINSMCLAYVTILVEERMVKQEHRAEAYRLYQKTTS-VWVPWF 314 (326)
Q Consensus 244 PNY~Ge~l~w~g~~l~~~~~~~~w~~~~~l~~~~ll~~~~~~~E~~~l~k~g~~~~Y~~Y~~~t~-~fIP~~ 314 (326)
|||+||++.-+++++.+. .++.++.+.++++++++.++..++|.|+.+||| ++|+|||++|+ |+||..
T Consensus 359 ~nY~gD~i~alawslp~g-f~s~lpyfy~iyf~~LLvhR~~RDe~rC~~KYG--~~W~~Yc~~VpyriiP~V 427 (428)
T KOG1435|consen 359 PNYLGDLIMALAWSLPCG-FNSPLPYFYPIYFTLLLVHRAARDEHRCRSKYG--EDWEEYCRKVPYRILPYV 427 (428)
T ss_pred cCcHHHHHHHHHHHHhcc-CCCCcchHHHHHHHHHHHHHHhhhHHHHHHHHh--hhHHHHHhhCCcccCCCC
Confidence 999999999999988763 345678788999999999988889999999995 89999999997 999975
No 7
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=99.57 E-value=1.7e-14 Score=116.24 Aligned_cols=103 Identities=20% Similarity=0.278 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccccccccCchhHHHHHHHHHHHHHHhhhhhhhHHH
Q 020444 191 DFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWTAV 270 (326)
Q Consensus 191 ~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~~~~~~~w~~~ 270 (326)
.++|.++.++|+.+...+-.++....+..... -++++++++++|+||++|||+|+|.++.++|.++... +.+.++
T Consensus 3 ~~~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~--~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~---s~~~l~ 77 (106)
T PF04191_consen 3 FVLGLLLILAGIALAIWAFKALGRFGTYYGDF--FGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLG---SWLGLL 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeecCCc--ccccCCcccccCCccCcCChHHHHHHHHHHHHHHHhC---cHHHHH
Confidence 57899999999999999999988766542211 0112224999999999999999999999999988753 344444
Q ss_pred HHHHHHHHHHH-hchHHHHHHHHhccCchHH
Q 020444 271 GSLINSMCLAY-VTILVEERMVKQEHRAEAY 300 (326)
Q Consensus 271 ~~l~~~~ll~~-~~~~~E~~~l~k~g~~~~Y 300 (326)
..+...++... ....||+.+.++|| ++|
T Consensus 78 ~~~~~~~~~~~~~~~~EE~~L~~~fG--~~Y 106 (106)
T PF04191_consen 78 LAVLAFLLYYIFIIRFEERFLERRFG--EEY 106 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhC--cCC
Confidence 44433333333 33367777777774 666
No 8
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=6.4e-14 Score=122.75 Aligned_cols=116 Identities=21% Similarity=0.242 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-cccccccCCcccccccccccccccCchhHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020444 193 VAVLVCLSGIVIACCADTQLHQFVSR-NEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWTAVG 271 (326)
Q Consensus 193 ig~~l~~~G~~le~~Ad~Ql~~f~~~-~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~~~~~~~w~~~~ 271 (326)
.|+.++.+|-+...+|..+....-+. ...+|.+++ +++++|+|+|+|||.|.|-++++.|..++.++ +..++.
T Consensus 85 ~gl~~~~~Ge~~r~~amitag~~f~H~va~~k~~~h---~lv~~GvY~y~RHPsY~g~flw~~gtq~~L~n---pis~v~ 158 (201)
T KOG2628|consen 85 LGLLMLILGEALRKIAMITAGTSFTHYVATKKVSDH---KLVTSGVYAYVRHPSYVGFFLWAAGTQTMLCN---PISLVA 158 (201)
T ss_pred CceeeeehHHHHHHHHHHHHHHHHHHHHhhccccCc---eeEeccchhheeCchHHHHHHHHHHHHHHHhC---HHHHHH
Confidence 67778888888888888887653332 111122333 49999999999999999999999998877543 222222
Q ss_pred HHHHHHHHHHhchHHHHHHHHhccCchHHHHHHhhcCcccccCC
Q 020444 272 SLINSMCLAYVTILVEERMVKQEHRAEAYRLYQKTTSVWVPWFK 315 (326)
Q Consensus 272 ~l~~~~ll~~~~~~~E~~~l~k~g~~~~Y~~Y~~~t~~fIP~~~ 315 (326)
-++...-+..-...+||+.+..+ +|++|.||+|+|+.=||+.+
T Consensus 159 f~~V~w~ff~~Ri~~EE~~Li~f-Fg~~Y~eY~kkV~sGiPfi~ 201 (201)
T KOG2628|consen 159 FLLVVWRFFADRIKEEEKYLISF-FGSSYVEYAKKVPSGIPFIK 201 (201)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHH-hhHHHHHHHHhCCcCCCCCC
Confidence 22222222221224444444444 57999999999987799864
No 9
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=99.36 E-value=4.8e-12 Score=100.64 Aligned_cols=61 Identities=23% Similarity=0.427 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccccccccCchhHHHHHHHHHHHHHH
Q 020444 196 LVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLS 260 (326)
Q Consensus 196 ~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~ 260 (326)
+++++|..+..+|-.+++++-+.....+++++ ++|+|+||++|||||+|.++..+|.....
T Consensus 3 ~~~i~g~~lr~~a~~~LG~~ft~~v~~~~~h~----lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll 63 (94)
T PF04140_consen 3 GLFIAGQLLRYWAIRTLGRYFTHRVIIQPGHK----LVTSGPYRYVRHPSYLGNIIWELGGQLLL 63 (94)
T ss_dssp --HHHHHHHHHHHHHHHGGG--SS--EETT---------SSTTTTBSSHHHHH-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccCcEEEEecCCCE----EecccccccccCchHHHHHHHHHHHHHHH
Confidence 56789999999999999876654322233444 99999999999999999777766655554
No 10
>PLN02392 probable steroid reductase DET2
Probab=99.15 E-value=2.3e-10 Score=106.34 Aligned_cols=109 Identities=23% Similarity=0.300 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccccccccCchhHHHHHHHHHHHHHHhhhhhhhH
Q 020444 189 IWDFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWT 268 (326)
Q Consensus 189 ~~~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~~~~~~~w~ 268 (326)
+..++|++++++|..++..+|.++.+.|++.+ .. ++.+.|+++++.+|||+||++.|+|+++.+.+ +.
T Consensus 150 ~~~~iG~~lF~~g~~~N~~sh~~L~~LRk~g~----~Y----~iP~GGlF~~VscPnYf~EileW~gfal~t~s----~~ 217 (260)
T PLN02392 150 WRFFGGLVVFLWGMRINVWSDRVLVGLKREGG----GY----KVPRGGWFELVSCPNYFGEIVEWLGWAVMTWS----WA 217 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC----ee----ECCCCCCcCeEcCCcHHHHHHHHHHHHHHHHH----HH
Confidence 35688999999999999999999999876431 12 38899999999999999999999999998632 21
Q ss_pred -HHHHHHHHHHHHHhchHHHHHHHHhccCchHHHHHHhhcCcccccC
Q 020444 269 -AVGSLINSMCLAYVTILVEERMVKQEHRAEAYRLYQKTTSVWVPWF 314 (326)
Q Consensus 269 -~~~~l~~~~ll~~~~~~~E~~~l~k~g~~~~Y~~Y~~~t~~fIP~~ 314 (326)
+...+....-+.-......+.+.+||| ++|.++.+++||++
T Consensus 218 ~~~F~~~~~~nl~~rA~~~hkwY~~kFg-----~~ypk~RkaiIPfi 259 (260)
T PLN02392 218 GFGFFLYTCSNLVPRACANHKWYLEKFG-----EDYPKGRKAVIPFL 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc-----ccccCCCeEecCcc
Confidence 111111111111122244455555542 35777888999986
No 11
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=99.07 E-value=6.8e-10 Score=100.60 Aligned_cols=109 Identities=25% Similarity=0.440 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccccccccCchhHHHHHHHHHHHHHHhhhhhhhH
Q 020444 189 IWDFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWT 268 (326)
Q Consensus 189 ~~~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~~~~~~~w~ 268 (326)
+...+|..+++.|+++...+|.-+.+-|++..+ ..++-+.|+|.|+-.||||||++.|+|+++.+.+ +.
T Consensus 147 ~r~liG~~lfv~Gm~iN~~sD~iL~~LRk~~~~-------~YkIP~GglFeyVsCPNYfgEiieW~Gyal~~ws----~p 215 (257)
T KOG1638|consen 147 IRFLIGVVLFVTGMLINIYSDNILRTLRKPGGK-------GYKIPRGGLFEYVSCPNYFGEIIEWIGYALASWS----LP 215 (257)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCC-------ceecCCCceEEEeecchHHHHHHHHHHHHHHhhh----HH
Confidence 367899999999999999999999988765322 2349999999999999999999999999988643 22
Q ss_pred HHHHHHHHHHHHHhchH-HHHHHHHhccCchHHHHHHhhcCcccccC
Q 020444 269 AVGSLINSMCLAYVTIL-VEERMVKQEHRAEAYRLYQKTTSVWVPWF 314 (326)
Q Consensus 269 ~~~~l~~~~ll~~~~~~-~E~~~l~k~g~~~~Y~~Y~~~t~~fIP~~ 314 (326)
.+.-.+.+++...-... ..+-.++ .++||-|..+.+||++
T Consensus 216 ~~aFa~ft~~~l~pRA~ahH~WY~~------kFe~YPk~RkAlIPfv 256 (257)
T KOG1638|consen 216 ALAFAFFTICNLGPRAYAHHKWYLK------KFEDYPKNRKALIPFV 256 (257)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH------hhccCCccceeecccc
Confidence 22222223333322112 2233333 4688999999999985
No 12
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=99.06 E-value=1.1e-09 Score=94.16 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccccccccCchhHHHHHHHHHHHHHHhhhhhhhH
Q 020444 189 IWDFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWT 268 (326)
Q Consensus 189 ~~~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~~~~~~~w~ 268 (326)
...++|++++++|......+|.++.+-|++..+ + ..+.+.|+++++..|||++|++.|.|+.+++.+ +.
T Consensus 40 ~~~~~g~~lf~~g~~~n~~~h~~L~~lr~~~~~---~----y~iP~gg~F~~vscP~Y~~Eil~w~~f~l~~~~----~~ 108 (150)
T PF02544_consen 40 PRFIIGLALFLIGSIGNFYSHLILANLRKPGSK---K----YKIPKGGLFEYVSCPHYFFEILIWIGFALLTGS----WP 108 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC---c----eeCCCCCCcceeeehhhHHHHHHHHHHHHHHhh----hh
Confidence 467899999999999999999999976653221 1 238899999999999999999999999987632 21
Q ss_pred HHHH-HHHHHHHHHhchHHHHHHHHhccCchHHHHHHhhcCcccccC
Q 020444 269 AVGS-LINSMCLAYVTILVEERMVKQEHRAEAYRLYQKTTSVWVPWF 314 (326)
Q Consensus 269 ~~~~-l~~~~ll~~~~~~~E~~~l~k~g~~~~Y~~Y~~~t~~fIP~~ 314 (326)
.... ++...-+........+... +.+++|.++..++||++
T Consensus 109 ~~~f~~~~~~~l~~~A~~~h~wY~------~~F~~yp~~R~~lIPfi 149 (150)
T PF02544_consen 109 SYAFALFVVVNLSPRAVQTHRWYK------KKFKEYPKNRKALIPFI 149 (150)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH------HHCccccCCCeEecCcc
Confidence 1111 1111111111112222322 45688999999999985
No 13
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.84 E-value=5.3e-08 Score=83.61 Aligned_cols=98 Identities=20% Similarity=0.268 Sum_probs=70.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccccccccCchhHH-HHHHHHHHHHHHhhhh
Q 020444 186 PLSIWDFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFG-EQLWWWGLVVLSWSLG 264 (326)
Q Consensus 186 ~~~~~~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~G-e~l~w~g~~l~~~~~~ 264 (326)
.+++..++|.+++++...+..++-.+++++.+.+--.-+.++ .+++|+||+.|||||+- -+.--.|+.+.+.
T Consensus 66 ~f~~~~~~gl~~~l~s~~ll~~vi~~LG~iWttki~ilP~h~----~v~sglfk~~kHPNYflnIipEligl~Ll~~--- 138 (172)
T COG1755 66 FFNWLSIIGLALLLFSQILLYWVIKSLGEIWTTKIMILPNHQ----IVRSGLFKTMKHPNYFLNIIPELIGLPLLCQ--- 138 (172)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHhhhheeeEEEeCCce----eeccccchhccCCcHHHHHHHHHHHHHHHHH---
Confidence 567778899999999999999999999998776322223455 99999999999999999 5556777888763
Q ss_pred hhh-H--HHHHHHHHHHHHHhchHHHHHHHHh
Q 020444 265 HGW-T--AVGSLINSMCLAYVTILVEERMVKQ 293 (326)
Q Consensus 265 ~~w-~--~~~~l~~~~ll~~~~~~~E~~~l~k 293 (326)
.| + +..|+ ..++.++...+||+.+..
T Consensus 139 -A~~Ta~l~~p~--ya~~L~vRIr~EekaL~~ 167 (172)
T COG1755 139 -AWYTALLFSPI--YALLLYVRIRQEEKALAE 167 (172)
T ss_pred -HHHHHHHHHHH--HHHHHhhhhhHHHHHHHH
Confidence 23 2 33443 334444445666666653
No 14
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=98.80 E-value=3.2e-08 Score=94.13 Aligned_cols=113 Identities=12% Similarity=0.212 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccccccccCchhHHHHHHHHHHHHHHhhhh-hhh
Q 020444 189 IWDFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLG-HGW 267 (326)
Q Consensus 189 ~~~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~~~~~-~~w 267 (326)
+.+++|++++++|...+..+|..+.+.|+++++ .....+...|+++++-.|||++|++.|+|+++++.+.. ..|
T Consensus 209 ~~q~iGl~lFlig~~~n~~~H~iLa~LR~~k~~-----~~~Y~IP~GglF~~VSCPHYf~EIliw~gfal~t~~~~~~~~ 283 (323)
T PLN03164 209 WFQWIGAAIFLWGWIHQYRCHAILGSLREHKKQ-----ADEYVIPYGDWFEMVSCPHYLAEIVIYAGLLIASGGTDLTIW 283 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCC-----CceEECCCCCCcCeEcCCcHHHHHHHHHHHHHHHcCchHHHH
Confidence 446899999999999999999999998754322 11234889999999999999999999999998863211 112
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHhccCchHHHHHHhhcCcccccC
Q 020444 268 TAVGSLINSMCLAYVTILVEERMVKQEHRAEAYRLYQKTTSVWVPWF 314 (326)
Q Consensus 268 ~~~~~l~~~~ll~~~~~~~E~~~l~k~g~~~~Y~~Y~~~t~~fIP~~ 314 (326)
.++ ++...-+........+.+.+ ++++|.++...+||++
T Consensus 284 l~~--~~v~~nL~~~A~~tHkWY~k------kF~dYPk~RkAIIPfI 322 (323)
T PLN03164 284 LLF--GFVVANLTFAAAETHRWYLQ------KFENYPRNRYAIIPFV 322 (323)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHH------hccccccCceEecCcc
Confidence 211 11111111122233444444 3556888889999986
No 15
>PLN02560 enoyl-CoA reductase
Probab=98.79 E-value=2.8e-08 Score=94.97 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccccccccCchhHHHHHHHHHHHHHHhhhhhhhHH
Q 020444 190 WDFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWTA 269 (326)
Q Consensus 190 ~~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~~~~~~~w~~ 269 (326)
..++|++++++|......+|.++.+.|+++ |+...++-..|+++++-.|||++|++.|+|+++++.+ .+++
T Consensus 193 ~~~~g~~lf~~~~~~N~~~h~~L~~LR~~~------g~~~y~IP~g~lF~~VscPnY~~Ei~~W~gf~~~t~~---~~~~ 263 (308)
T PLN02560 193 QMKVGFGFGLVCQLANFYCHIILRNLRKPD------GKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIATQT---VAGY 263 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------CCCCeeCCCCCCcCeecCCcHHHHHHHHHHHHHHHcc---HHHH
Confidence 458899999999999999999999987531 1111238889999999999999999999999998632 1122
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHhccCchHHHHHHhhcCccccc
Q 020444 270 VGSLINSMCLAYVTILVEERMVKQEHRAEAYRLYQKTTSVWVPW 313 (326)
Q Consensus 270 ~~~l~~~~ll~~~~~~~E~~~l~k~g~~~~Y~~Y~~~t~~fIP~ 313 (326)
+..++...-+.-.....++.+.++|++.++.++|.+|..+++|+
T Consensus 264 ~F~~~~~~~m~~wA~~kh~~Y~k~F~d~~~~~~yp~~~~~~pp~ 307 (308)
T PLN02560 264 LFLAVAAAIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPF 307 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCCceEeCCCc
Confidence 22212222222223356777777764222345587766666665
No 16
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=97.45 E-value=0.00081 Score=63.02 Aligned_cols=112 Identities=15% Similarity=0.281 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccccccccCchhHHHHHHHHHHHHHHhhhhhhhH
Q 020444 189 IWDFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWT 268 (326)
Q Consensus 189 ~~~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~~~~~~~w~ 268 (326)
+.+++|.++++.|-.=+.-+..++.+-++.+...++ . .+.+.|+++++--|||++|+++..|++..... ...|.
T Consensus 192 i~q~~g~~iF~i~s~~Qy~~h~iL~nlrk~~~~~~~-~----~ip~g~~F~~Vs~Ph~L~Ei~iY~~ia~~~~~-~~iwL 265 (304)
T KOG1640|consen 192 ILQWLGLGIFAIGSIHQYASHEILGNLRKYPRQAKA-Y----LIPKGGWFKLVSCPHYLAEIIIYVGIALGAPD-LTIWL 265 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-e----ecCCCCEeeecCChHHHHHHHHHHHHHhcCCc-hHHHH
Confidence 367888888888888888888888877766542221 2 38899999999999999999999996554321 11243
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHhccCchHHHHHHhhcCcccccC
Q 020444 269 AVGSLINSMCLAYVTILVEERMVKQEHRAEAYRLYQKTTSVWVPWF 314 (326)
Q Consensus 269 ~~~~l~~~~ll~~~~~~~E~~~l~k~g~~~~Y~~Y~~~t~~fIP~~ 314 (326)
+++.++.- +.+....+.+-.+ +.+++|-+....+||+.
T Consensus 266 v~~~V~~N--~t~aA~~Th~wY~------~kF~~yp~~R~AiiPfl 303 (304)
T KOG1640|consen 266 VFGWVAAN--LTYAALETHRWYL------KKFENYPKNRHAIIPFL 303 (304)
T ss_pred HHHHHHHH--HHHHHHHHHHHHH------HhhccCccccccccccc
Confidence 33332211 1121112233333 34788999999999985
No 17
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=96.80 E-value=0.015 Score=52.17 Aligned_cols=95 Identities=21% Similarity=0.308 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccccccccCchhHHHHHHHHHHHHHHhhhhhhh
Q 020444 188 SIWDFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGW 267 (326)
Q Consensus 188 ~~~~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~~~~~~~w 267 (326)
.+...+..+++..++++-..|..+-.. +- +++++|||++.|-.+ |..-=+...+....+
T Consensus 67 ~~~~~l~~~lm~~a~il~~~a~~~~~~-----------------~~---i~r~~RHP~l~g~~l-WA~aHLl~nGd~~~~ 125 (191)
T PF07298_consen 67 PWLRHLANLLMLLAFILLVAALFPPNP-----------------FS---IYRITRHPMLLGVLL-WALAHLLANGDLASL 125 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccCcc-----------------hH---HHHHhcCchHHHHHH-HHHHHhhhcCcHHHH
Confidence 455666777777777766554322110 11 899999999999654 332112221111122
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHhccCchHHHHHHhhcCc
Q 020444 268 TAVGSLINSMCLAYVTILVEERMVKQEHRAEAYRLYQKTTSV 309 (326)
Q Consensus 268 ~~~~~l~~~~ll~~~~~~~E~~~l~k~g~~~~Y~~Y~~~t~~ 309 (326)
-+.+......++- ....|+| +++ +++|++|+++|+.
T Consensus 126 lLFg~~~~~al~~--~~~~~rr--~~~--g~~~~~~~~~~s~ 161 (191)
T PF07298_consen 126 LLFGGFLAWALIG--IILIDRR--RRF--GDAWRAYPRRTSI 161 (191)
T ss_pred HHHHHHHHHHHHH--HHHHHHh--hcc--ccccccccCCCCC
Confidence 3334433332222 2355666 444 6889999999873
No 18
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=95.55 E-value=0.028 Score=51.89 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=43.6
Q ss_pred ccc-ccccccCchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhc-hHHHHHHHHhccCchHHHHHHhhcCccc
Q 020444 234 DRG-LWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWTAVGSLINSMCLAYVT-ILVEERMVKQEHRAEAYRLYQKTTSVWV 311 (326)
Q Consensus 234 t~G-lw~~sRHPNY~Ge~l~w~g~~l~~~~~~~~w~~~~~l~~~~ll~~~~-~~~E~~~l~k~g~~~~Y~~Y~~~t~~fI 311 (326)
-+| ++.++-.|||+-|+..|+|+.++.-. + .+.++.++-..-.+ ...-+ .++| .+|+.+|-++...+|
T Consensus 225 ~~g~lFnlvscpNYt~Ev~sWi~F~i~tq~----l--~a~lFl~vg~aqMtiWA~~K--h~~y--lKeFp~Ypr~r~~ii 294 (297)
T KOG1639|consen 225 PDGFLFNLVSCPNYTYEVGSWIGFAIMTQC----L--AAYLFLTVGAAQMTIWAKGK--HRRY--LKEFPDYPRRRKIII 294 (297)
T ss_pred CCccEEEEEecCCcceehHHHHHHHHHHHH----H--HHHHHHHHHHHHHHHHHHhh--hHhH--hhhcccCCccccccC
Confidence 456 99999999999999999999887521 1 11122111111111 11111 1223 357889999998999
Q ss_pred ccC
Q 020444 312 PWF 314 (326)
Q Consensus 312 P~~ 314 (326)
|++
T Consensus 295 PFv 297 (297)
T KOG1639|consen 295 PFV 297 (297)
T ss_pred CCC
Confidence 974
No 19
>COG4094 Predicted membrane protein [Function unknown]
Probab=82.95 E-value=2.4 Score=38.11 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=42.7
Q ss_pred cccccccccccCchhHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHHHHHHhchHHHHHHHHhccCchHHHHHHhhcCc
Q 020444 232 NLDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGWT--AVGSLINSMCLAYVTILVEERMVKQEHRAEAYRLYQKTTSV 309 (326)
Q Consensus 232 lit~Glw~~sRHPNY~Ge~l~w~g~~l~~~~~~~~w~--~~~~l~~~~ll~~~~~~~E~~~l~k~g~~~~Y~~Y~~~t~~ 309 (326)
+..+|+=+.+|||.-.|..++.+|=-+.. |...+ +.+......+.. ....|+|..+|| ||+++.=+++|++
T Consensus 98 ~~~g~Ii~itRHP~l~g~~iWalaHll~n---Gd~~Svllfggf~l~~~~~--~~~~~rR~r~r~--g~a~~~~~~~ts~ 170 (219)
T COG4094 98 LYEGRIIRITRHPQLLGVVIWALAHLLAN---GDTFSVLLFGGFLLWAVVG--VWSGDRRARKRY--GEAFVAPVQVTSR 170 (219)
T ss_pred ccCCceEEEecCchhHHHHHHHHHHhhcc---CceeeHHHHHHHHHHHHHH--hhhhhhhhhccc--Ccceeeeeccccc
Confidence 45567788999999999766655543332 22222 222222222221 246788888877 4777776666653
Q ss_pred cccc
Q 020444 310 WVPW 313 (326)
Q Consensus 310 fIP~ 313 (326)
+|+
T Consensus 171 -~pf 173 (219)
T COG4094 171 -IPF 173 (219)
T ss_pred -cch
Confidence 454
No 20
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=68.48 E-value=26 Score=30.31 Aligned_cols=67 Identities=13% Similarity=0.029 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccccccccCchhHHHHHHHHHHHHHH
Q 020444 191 DFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLS 260 (326)
Q Consensus 191 ~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~ 260 (326)
.+.+..++.+|-++...+-.++..-.+--..+ =|..- .-+|+=++.+.+||+|-|..+..+|.++.-
T Consensus 66 pl~~~~L~aiGq~Lv~ss~~~LG~tGTYlGdy--FGilm-~~VT~FPFnv~~nPmY~GStl~fLg~al~~ 132 (164)
T PLN02797 66 PLYFWPLFAFGQFLNFRVYQLLGEAGTYYGVR--FGKNI-PWVTEFPFGVIRDPQYVGSILSLLACLSWV 132 (164)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhCCceeeehhh--hcccc-cccccCCCCCCCCcchhhHHHHHHHHHHHh
Confidence 46788899999999888888876433211000 11100 157788999999999999999999987764
No 21
>COG3162 Predicted membrane protein [Function unknown]
Probab=60.80 E-value=48 Score=26.61 Aligned_cols=62 Identities=8% Similarity=0.037 Sum_probs=34.9
Q ss_pred CCcchHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHhhC--------CCCCcHHHHHHHHHHHHHHHHHHH
Q 020444 139 EDWRFNDMRSQYGKHWWWVSFFAVYLSQQVFLIGVCLPFYVVHSV--------DKPLSIWDFVAVLVCLSGIVIACC 207 (326)
Q Consensus 139 eD~Ry~~~r~~~~~~~~~~~f~~i~~~Q~~l~~~~~lP~~~~~~~--------~~~~~~~~~ig~~l~~~G~~le~~ 207 (326)
..+||.++++|-.+..|..+. ..+++.+++|+...... ++..++.-.+|+++++.++++..+
T Consensus 11 a~p~f~eLv~kr~~Fa~~ltl-------~flv~Y~~filLiaf~~~~l~tp~~~~~Vt~Gip~gvg~fv~tfVlt~I 80 (102)
T COG3162 11 ANPRFRELVRKRRRFAVPLTL-------IFLVVYFGFILLIAFAPGWLATPLFGASVTRGIPFGVGVFVMTFVLTGI 80 (102)
T ss_pred cCHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHhcCcccCCceehhHhHHHHHHHHHHHHHHH
Confidence 568999999887654442221 11333344444433322 122455566788888888777654
No 22
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=54.93 E-value=74 Score=24.76 Aligned_cols=62 Identities=10% Similarity=0.099 Sum_probs=31.9
Q ss_pred CCcchHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHhh-------CC-CCCcHHHHHHHHHHHHHHHHHHH
Q 020444 139 EDWRFNDMRSQYGKHWWWVSFFAVYLSQQVFLIGVCLPFYVVHS-------VD-KPLSIWDFVAVLVCLSGIVIACC 207 (326)
Q Consensus 139 eD~Ry~~~r~~~~~~~~~~~f~~i~~~Q~~l~~~~~lP~~~~~~-------~~-~~~~~~~~ig~~l~~~G~~le~~ 207 (326)
+|++|++++++-.+.-+. +..+ .++...++|+..... .. ++.+..-+.|+++++.++++..+
T Consensus 3 ~~p~f~~L~r~r~r~~~~--l~~i-----~l~~y~~~~ll~a~~p~~m~~~v~~G~~t~g~~~g~~~~~~~~~l~~~ 72 (91)
T PF04341_consen 3 RSPEFQELVRRRRRLAWP--LSAI-----FLVLYFGFVLLSAFAPELMATPVFPGSLTLGIVLGLGQIVFAWVLTWL 72 (91)
T ss_pred CCHHHHHHHHHHHHHHHH--HHHH-----HHHHHHHHHHHHHHCHHHHcCcccCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 688999998776432221 1111 122223334333322 12 35666667777777766665443
No 23
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=53.12 E-value=67 Score=28.25 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccccccccCchhHHHHHHHHHHHHHH
Q 020444 191 DFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLS 260 (326)
Q Consensus 191 ~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~ 260 (326)
.-+|.+++..|.++-..+...+.--.+--.+. =|--.++=++.=++...-||+|-|..+..+|+++.-
T Consensus 98 ~~lg~alfglG~VLVLSSmykLG~~GTyLGDY--FGiL~~eRVtgFPFNv~dNPMY~GSTl~fLg~Al~~ 165 (208)
T KOG4142|consen 98 YSLGLALFGLGVVLVLSSMYKLGFAGTYLGDY--FGILKEERVTGFPFNVLDNPMYWGSTLNFLGWALMH 165 (208)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhccchhhhhhh--hhhhhhhhcccccccccCCcccccchHHHHHHHHHc
Confidence 45666777777666555444432111100000 000000135666899999999999999999998873
No 24
>COG3462 Predicted membrane protein [Function unknown]
Probab=37.76 E-value=88 Score=25.59 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=12.2
Q ss_pred HHHHHHHHhccCch-HHHHHHh
Q 020444 285 LVEERMVKQEHRAE-AYRLYQK 305 (326)
Q Consensus 285 ~~E~~~l~k~g~~~-~Y~~Y~~ 305 (326)
..||...|||.+|| .=+||.+
T Consensus 89 RA~eIlkER~AkGEItEEEY~r 110 (117)
T COG3462 89 RAEEILKERYAKGEITEEEYRR 110 (117)
T ss_pred HHHHHHHHHHhcCCCCHHHHHH
Confidence 44667778886655 2344444
No 25
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.62 E-value=76 Score=30.34 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=35.0
Q ss_pred hHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHH-----------HHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 020444 143 FNDMRSQYGKHWWWVSFFAVYLSQQVFLIGVCLPF-----------YVVHSVDKPLSIWDFVAVLVCLSGIVIACCADTQ 211 (326)
Q Consensus 143 y~~~r~~~~~~~~~~~f~~i~~~Q~~l~~~~~lP~-----------~~~~~~~~~~~~~~~ig~~l~~~G~~le~~Ad~Q 211 (326)
|..+|.+-. +-...||.+|+.|.++..+-++-+ .-....+...+....++.+++.+-.++..+.-.|
T Consensus 188 YkAFRsDSS--f~F~~FFF~y~~q~~~~v~qAvgf~g~~~~G~i~ai~~~~~~i~v~i~m~i~a~~Ft~~av~~i~~i~k 265 (313)
T KOG3088|consen 188 YKAFRTDSS--FNFGAFFFTYFFQIVFCVFQAVGFPGWGLCGWIPAIDVLSGNIAVGILMLIGAGLFTLEAVLSIWVLQK 265 (313)
T ss_pred HHHhccccc--hhhHHHHHHHHHHHHHHHHHHHccCCcchhhhhhHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554432 222457888888877655333220 0000011112334455555555555566666666
Q ss_pred HHHh
Q 020444 212 LHQF 215 (326)
Q Consensus 212 l~~f 215 (326)
-+.+
T Consensus 266 Vh~~ 269 (313)
T KOG3088|consen 266 VHSY 269 (313)
T ss_pred HHHH
Confidence 6653
No 26
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=32.77 E-value=31 Score=28.14 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.5
Q ss_pred chHHHHHHhhcCcccccC
Q 020444 297 AEAYRLYQKTTSVWVPWF 314 (326)
Q Consensus 297 ~~~Y~~Y~~~t~~fIP~~ 314 (326)
.+.|++||++|.|=||-+
T Consensus 93 ~p~~~~yq~~t~R~ipv~ 110 (113)
T TIGR00026 93 YPRYGRYQSRTDRPIPVF 110 (113)
T ss_pred CcCHHHHHhhCCCcccEE
Confidence 478999999999988854
No 27
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=31.03 E-value=4e+02 Score=24.04 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020444 189 IWDFVAVLVCLSGIVIACCADTQLHQFV 216 (326)
Q Consensus 189 ~~~~ig~~l~~~G~~le~~Ad~Ql~~f~ 216 (326)
+.++++.++.++|.++..+|-.=+-+|.
T Consensus 4 i~eiI~~vLLliG~~f~ligaIGLlRfP 31 (197)
T PRK12585 4 IIEIIISIMILIGGLLSILAAIGVIRLP 31 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567788888888888887777776664
No 28
>PF15284 PAGK: Phage-encoded virulence factor
Probab=29.92 E-value=48 Score=24.15 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=25.8
Q ss_pred ccchhhhhhhhchhhHHHHHHHHhhhcccccccCcchhhh-hh
Q 020444 5 NLKNAVIALLAPLPSILLHLSLLNHHYDYERQTNQYPIRS-WC 46 (326)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 46 (326)
.+|++-.+.+..||+.+|-++-...-.+.. .-.++.+- ||
T Consensus 3 k~ksifL~l~~~LsA~~FSasamAa~~~~~--~~~~~~~P~wC 43 (61)
T PF15284_consen 3 KFKSIFLALVFILSAAGFSASAMAADSSPH--RKPANIKPVWC 43 (61)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhhCCC--CCCcCCCChHH
Confidence 689999999999998886665544433322 12235555 77
No 29
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=29.74 E-value=2.5e+02 Score=26.74 Aligned_cols=57 Identities=19% Similarity=0.417 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhccccccccccCCcccccccccccccccCchhHHHHHHHHHHHHHHh
Q 020444 191 DFVAVLVCLSGIVIACCADT-QLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLSW 261 (326)
Q Consensus 191 ~~ig~~l~~~G~~le~~Ad~-Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~~ 261 (326)
.++|+.+.++|-++...++. ||..+++.+++..+++ ++. ..|+-+-++|.|+.+.+.
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--------~~~------~~~l~~~~W~~G~~~~~~ 62 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--------SGG------RSYLRRPLWWIGLLLMVL 62 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--------chh------hHHHhhHHHHHHHHHHhc
Confidence 46788888888777777665 7777665432110010 111 257777778888776654
No 30
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=24.51 E-value=86 Score=23.32 Aligned_cols=15 Identities=33% Similarity=1.139 Sum_probs=11.1
Q ss_pred EeeccchHHHHHHHH
Q 020444 79 IDLYWTVIPVMLVHF 93 (326)
Q Consensus 79 vD~~Ws~~~~~~~~~ 93 (326)
+...|+++|.++...
T Consensus 62 lE~~WTiiP~iiLl~ 76 (84)
T PF02790_consen 62 LEIIWTIIPAIILLF 76 (84)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHH
Confidence 667899999876544
No 31
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=23.75 E-value=6.2e+02 Score=23.87 Aligned_cols=93 Identities=16% Similarity=0.300 Sum_probs=47.7
Q ss_pred hhhhhhhchhhHHHHHHHHhhhc------ccccccCcchhhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhCCCceEee
Q 020444 9 AVIALLAPLPSILLHLSLLNHHY------DYERQTNQYPIRSWCYHHPL-LLANLLFFFNVNVLFWIISLIQNSNWMIDL 81 (326)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~n~s~vD~ 81 (326)
+.-..+.-+|++.|.++++..-. ..++......++ |. ...|. +...++++.|+.-...++.
T Consensus 92 ~~~~iL~~lP~~lfFSty~llvlfWaeIy~~ar~~~~~~l~------~~~~~iN~-~iY~~~i~i~i~~~~~~~~----- 159 (281)
T PF06454_consen 92 VLDYILNDLPTFLFFSTYTLLVLFWAEIYYQARSVSTDKLR------PIFIVINV-VIYLFQIIIWILLFFSPSS----- 159 (281)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccchh------hHHHHHHH-HHHHHHHHHHhheecccch-----
Confidence 34457788899888887665421 111121122222 33 33343 4555666667664433333
Q ss_pred ccchHHHHHHHHHHhcccccCCcCchHHHHHHHHHHHHHHHhhhhH
Q 020444 82 YWTVIPVMLVHFFATHPLSLGQYNHWRSKVVIALTWVWSLRLSHNY 127 (326)
Q Consensus 82 ~Ws~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~v~~W~~RL~~~l 127 (326)
..-.+...+.+ .-..++.+....+|.||...+
T Consensus 160 ---~v~~i~~~~~A-----------~isli~a~~Fl~YG~~L~~~L 191 (281)
T PF06454_consen 160 ---TVSIIYAIFIA-----------VISLIAALGFLYYGGKLFFKL 191 (281)
T ss_pred ---HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 10011111111 234566778889999998875
No 32
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=23.67 E-value=55 Score=25.49 Aligned_cols=32 Identities=25% Similarity=0.571 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCceEeecc
Q 020444 52 LLANLLFFFNVNVLFWIISLIQ-NSNWMIDLYW 83 (326)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~s~~~-~n~s~vD~~W 83 (326)
+.-.+++.+.+..++|+++.+. +.+.+-|+||
T Consensus 42 ~~~gal~~IFiGAllWL~GARigGrE~VaDRYw 74 (89)
T PF10762_consen 42 LAHGALFSIFIGALLWLVGARIGGREKVADRYW 74 (89)
T ss_pred HHhhHHHHHHHHHHHHHhcccccCcchhhhhHH
Confidence 3445667888999999997755 6888999998
No 33
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=23.64 E-value=1.2e+02 Score=29.55 Aligned_cols=86 Identities=21% Similarity=0.297 Sum_probs=44.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhC---CCC-----CcHHHHHHHHHHHHHHHHHHHHHH---------HH--HHhccc--
Q 020444 160 FAVYLSQQVFLIGVCLPFYVVHSV---DKP-----LSIWDFVAVLVCLSGIVIACCADT---------QL--HQFVSR-- 218 (326)
Q Consensus 160 ~~i~~~Q~~l~~~~~lP~~~~~~~---~~~-----~~~~~~ig~~l~~~G~~le~~Ad~---------Ql--~~f~~~-- 218 (326)
.++.+++++.-.+.-+|+....+. +-| -....+++++..+.|.++-..... |+ ..||++
T Consensus 204 LGvsfi~siMTLiaFlPvL~~ls~~Vs~Lpiig~ip~~Lv~aAi~wslfGtv~la~vGIKLPGLef~NQrvEAAyRKELV 283 (405)
T COG1133 204 LGVSFINAIMTLIAFLPVLFTLSAHVSELPIIGHIPHALVWAAIVWSLFGTVLLAVVGIKLPGLEFRNQRVEAAYRKELV 283 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCchHHHHHHHHHHHhchHHHHhhhccCCCcccccHHHHHHHHhhhh
Confidence 345666777665566888766543 111 134556666666777665444332 22 234443
Q ss_pred -cccccccCCcccccccccccccccCchhHHH
Q 020444 219 -NEKLKELGKPVVLNLDRGLWYYSRHPNYFGE 249 (326)
Q Consensus 219 -~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge 249 (326)
.++++++.+| --..-+++=+|| ||+-.
T Consensus 284 YgEDh~drA~p---~T~~ELf~nvr~-NYfRL 311 (405)
T COG1133 284 YGEDHADRATP---PTVRELFSNVRK-NYFRL 311 (405)
T ss_pred ccCCchhhcCC---chHHHHHHHHHH-HHHHH
Confidence 1111222332 334567777777 66653
No 34
>PRK10692 hypothetical protein; Provisional
Probab=22.71 E-value=59 Score=25.47 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCceEeecc
Q 020444 53 LANLLFFFNVNVLFWIISLIQ-NSNWMIDLYW 83 (326)
Q Consensus 53 ~~~~~~~~~~~~~~~~~s~~~-~n~s~vD~~W 83 (326)
.-.+++.+.+..++|+++.+. +.+.+-|+||
T Consensus 43 ~~gal~~IFiGAllWL~GArigGRE~VaDRYw 74 (92)
T PRK10692 43 AHGALLSIFVGALLWLAGARVGGREQVADRYW 74 (92)
T ss_pred HhhHHHHHHHHHHHHHhcccccCcchhhhhHH
Confidence 445567888899999997755 6888999998
Done!