Query 020444
Match_columns 326
No_of_seqs 319 out of 1356
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 03:03:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.9 6E-24 2E-28 189.0 18.8 118 188-314 75-193 (194)
2 3r5y_A Putative uncharacterize 62.0 4.1 0.00014 33.8 2.5 18 297-314 125-142 (147)
3 3r5z_A Putative uncharacterize 54.3 6.9 0.00024 32.3 2.6 18 297-314 123-140 (145)
4 3h96_A F420-H2 dependent reduc 53.2 7.1 0.00024 32.1 2.4 18 297-314 119-138 (143)
5 3r5l_A Deazaflavin-dependent n 50.4 2.6 8.8E-05 33.9 -0.7 18 297-314 101-118 (122)
6 2jp3_A FXYD domain-containing 14.3 1.1E+02 0.0038 21.7 2.5 25 192-217 23-47 (67)
7 1y4e_A Sodium/hydrogen exchang 11.4 46 0.0016 19.4 -0.2 20 9-28 4-23 (27)
8 2gsm_B Cytochrome C oxidase su 8.8 1.9E+02 0.0065 25.8 2.8 14 113-126 87-100 (262)
9 2jln_A MHP1; hydantoin, transp 8.0 6.5E+02 0.022 24.1 6.6 25 235-259 398-422 (501)
10 3hb3_B Cytochrome C oxidase su 7.9 2.4E+02 0.008 25.8 3.1 13 113-125 118-130 (298)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.92 E-value=6e-24 Score=188.96 Aligned_cols=118 Identities=18% Similarity=0.156 Sum_probs=89.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccccccccCchhHHHHHHHHHHHHHHhhhhhhh
Q 020444 188 SIWDFVAVLVCLSGIVIACCADTQLHQFVSRNEKLKELGKPVVLNLDRGLWYYSRHPNYFGEQLWWWGLVVLSWSLGHGW 267 (326)
Q Consensus 188 ~~~~~ig~~l~~~G~~le~~Ad~Ql~~f~~~~~~~~~~gk~~~~lit~Glw~~sRHPNY~Ge~l~w~g~~l~~~~~~~~w 267 (326)
.+..++|.+++++|+.++..||.|+.++.+...+.+++++ ++|+|+|+++|||||+|++++++|+++... +.+
T Consensus 75 ~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~----Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~---s~~ 147 (194)
T 4a2n_B 75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHK----LVKEGIYKNIRHPMYAHLWLWVITQGIILS---NWV 147 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCC----CCCSSTTTTBSSHHHHHHHHHHHHHHHHHT---CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCe----eeecCcchhccCccHHHHHHHHHHHHHHhc---cHH
Confidence 4678999999999999999999999765433222223455 999999999999999999999999988753 344
Q ss_pred HHH-HHHHHHHHHHHhchHHHHHHHHhccCchHHHHHHhhcCcccccC
Q 020444 268 TAV-GSLINSMCLAYVTILVEERMVKQEHRAEAYRLYQKTTSVWVPWF 314 (326)
Q Consensus 268 ~~~-~~l~~~~ll~~~~~~~E~~~l~k~g~~~~Y~~Y~~~t~~fIP~~ 314 (326)
+++ +++....++....+.||+.+.++| |++|++||++|++|||++
T Consensus 148 ~~~~~~~~~~~~~~~ri~~EE~~L~~~f--G~~Y~~Y~~rv~r~iP~i 193 (194)
T 4a2n_B 148 VLIFGIVAWAILYFIRVPKEEELLIEEF--GDEYIEYMGKTGRLFPKV 193 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--THHHHHHHHHCBSSSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHhCCeeCcee
Confidence 544 333333444444467777777776 599999999999999985
No 2
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}
Probab=62.01 E-value=4.1 Score=33.76 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=16.0
Q ss_pred chHHHHHHhhcCcccccC
Q 020444 297 AEAYRLYQKTTSVWVPWF 314 (326)
Q Consensus 297 ~~~Y~~Y~~~t~~fIP~~ 314 (326)
.|.|.+||++|.|-||-+
T Consensus 125 ~P~y~~Yq~~t~R~IPv~ 142 (147)
T 3r5y_A 125 YPTYQEYQDNTRRLIPVL 142 (147)
T ss_dssp CTHHHHHHHTCSSCCCEE
T ss_pred CCCHHHHHhhcCCcCcEE
Confidence 489999999999999964
No 3
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}
Probab=54.25 E-value=6.9 Score=32.30 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=16.0
Q ss_pred chHHHHHHhhcCcccccC
Q 020444 297 AEAYRLYQKTTSVWVPWF 314 (326)
Q Consensus 297 ~~~Y~~Y~~~t~~fIP~~ 314 (326)
.|.|.+||++|.|-||-+
T Consensus 123 ~p~y~~Yq~~t~R~iPv~ 140 (145)
T 3r5z_A 123 WPDYAEYQTKTTREIPVF 140 (145)
T ss_dssp CTHHHHHGGGCSSCCCEE
T ss_pred CcCHHHHHHhcCCcCceE
Confidence 489999999999999964
No 4
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str}
Probab=53.17 E-value=7.1 Score=32.14 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.9
Q ss_pred chHHHHHHhhcC--cccccC
Q 020444 297 AEAYRLYQKTTS--VWVPWF 314 (326)
Q Consensus 297 ~~~Y~~Y~~~t~--~fIP~~ 314 (326)
.|.|.+||++|. |-||-+
T Consensus 119 ~P~y~~Yq~~t~~~R~iPv~ 138 (143)
T 3h96_A 119 YPGFADYEKKTAGIRTIPVL 138 (143)
T ss_dssp CTHHHHHHHHTTTTCCCCEE
T ss_pred CcCHHHHHHhcCCCCcccEE
Confidence 489999999999 999964
No 5
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=50.41 E-value=2.6 Score=33.85 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.9
Q ss_pred chHHHHHHhhcCcccccC
Q 020444 297 AEAYRLYQKTTSVWVPWF 314 (326)
Q Consensus 297 ~~~Y~~Y~~~t~~fIP~~ 314 (326)
+|.|.+||++|.|-||-+
T Consensus 101 ~p~y~~yq~~t~R~ipv~ 118 (122)
T 3r5l_A 101 YPSYQDYQSWTDRTIPIV 118 (122)
T ss_dssp CTTCCCTTGGGCTTSCEE
T ss_pred CcCHHHHHhhcCCcccEE
Confidence 489999999999999964
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=14.32 E-value=1.1e+02 Score=21.72 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020444 192 FVAVLVCLSGIVIACCADTQLHQFVS 217 (326)
Q Consensus 192 ~ig~~l~~~G~~le~~Ad~Ql~~f~~ 217 (326)
+.+.+++++|+++-... +=+-+|.+
T Consensus 23 ifA~vLfi~GI~iilS~-kcrCk~~q 47 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSG-KCKCRRNH 47 (67)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHTC
T ss_pred hhHHHHHHHHHHHHHcC-cccccCCC
Confidence 34456667776665433 23334443
No 7
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=11.38 E-value=46 Score=19.44 Aligned_cols=20 Identities=25% Similarity=0.364 Sum_probs=16.0
Q ss_pred hhhhhhhchhhHHHHHHHHh
Q 020444 9 AVIALLAPLPSILLHLSLLN 28 (326)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (326)
-.+-|+.+||-|++.+++..
T Consensus 4 ~~~FF~~LLPPII~~aGy~l 23 (27)
T 1y4e_A 4 SDVFFLFLLPPIILDAGYFL 23 (27)
T ss_dssp SCSSHHHHSCCSSHHHHTTG
T ss_pred cceeeeeccCccEeeccccc
Confidence 34568899999999999754
No 8
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=8.76 E-value=1.9e+02 Score=25.78 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhhh
Q 020444 113 IALTWVWSLRLSHN 126 (326)
Q Consensus 113 ~~~v~~W~~RL~~~ 126 (326)
++++.+.++|+-+.
T Consensus 87 Li~la~pS~~~ly~ 100 (262)
T 2gsm_B 87 LVAIGAFSLPVLFN 100 (262)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445666666553
No 9
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=8.03 E-value=6.5e+02 Score=24.05 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=18.1
Q ss_pred ccccccccCchhHHHHHHHHHHHHH
Q 020444 235 RGLWYYSRHPNYFGEQLWWWGLVVL 259 (326)
Q Consensus 235 ~Glw~~sRHPNY~Ge~l~w~g~~l~ 259 (326)
+|.|.|.+.-|.-|-..+-.|....
T Consensus 398 ~g~y~y~~g~n~~a~~a~~~G~~~~ 422 (501)
T 2jln_A 398 KGIYTYWRGVNWVALAVYAVALAVS 422 (501)
T ss_dssp SSTTCTBTTBCHHHHHHHHHHHHHH
T ss_pred CCccccCCCCCHHHHHHHHHHHHHH
Confidence 5888888888988876666665443
No 10
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=7.94 E-value=2.4e+02 Score=25.77 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhh
Q 020444 113 IALTWVWSLRLSH 125 (326)
Q Consensus 113 ~~~v~~W~~RL~~ 125 (326)
++++.++++|+-+
T Consensus 118 Li~La~pSl~~ly 130 (298)
T 3hb3_B 118 LVAIGAFSLPILF 130 (298)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3344566666654
Done!