Query 020444
Match_columns 326
No_of_seqs 319 out of 1356
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 03:04:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020444.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020444hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e7la1 a.140.4.1 (A:104-157) 30.0 12 0.00088 23.8 1.8 13 243-255 2-14 (54)
2 d1rgoa2 g.66.1.1 (A:187-220) B 23.4 9.8 0.00072 22.0 0.4 12 241-252 1-12 (34)
3 d1vh4a_ b.80.6.1 (A:) Stabiliz 14.8 20 0.0015 31.5 0.7 24 126-149 26-49 (413)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 13.8 83 0.0061 21.7 3.9 44 48-91 30-83 (100)
5 d1v54b2 f.17.2.1 (B:1-90) Mito 10.8 56 0.0041 22.4 1.9 16 78-93 60-75 (90)
6 d2e74g1 f.23.26.1 (G:9-35) Pet 8.9 28 0.002 18.5 -0.3 9 297-305 15-23 (27)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 8.7 1.3E+02 0.0091 21.1 3.3 13 79-91 77-89 (107)
8 d1tzyc_ a.22.1.1 (C:) Histone 6.6 46 0.0033 23.5 -0.2 17 299-315 10-26 (95)
9 d1v8ha1 b.1.18.19 (A:2-107) Su 4.3 56 0.0041 23.3 -1.0 10 239-248 23-32 (106)
10 d1ytqa2 b.11.1.1 (A:104-194) b 4.1 49 0.0036 22.8 -1.5 19 232-250 41-59 (91)
No 1
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=29.96 E-value=12 Score=23.82 Aligned_cols=13 Identities=31% Similarity=0.706 Sum_probs=11.0
Q ss_pred CchhHHHHHHHHH
Q 020444 243 HPNYFGEQLWWWG 255 (326)
Q Consensus 243 HPNY~Ge~l~w~g 255 (326)
||||.++..=+++
T Consensus 2 Hp~~~~D~~K~FS 14 (54)
T d1e7la1 2 HPNFVGDKSKEFS 14 (54)
T ss_dssp CTHHHHHHHHHHH
T ss_pred CcchhhHHHHHHH
Confidence 9999999887764
No 2
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.38 E-value=9.8 Score=21.99 Aligned_cols=12 Identities=42% Similarity=0.637 Sum_probs=7.6
Q ss_pred ccCchhHHHHHH
Q 020444 241 SRHPNYFGEQLW 252 (326)
Q Consensus 241 sRHPNY~Ge~l~ 252 (326)
+|||.|=-++.-
T Consensus 1 ~rhpkyKT~lC~ 12 (34)
T d1rgoa2 1 TRHPKYKTELCR 12 (34)
T ss_dssp CCCTTTTCSBCH
T ss_pred CCCCCccchhcc
Confidence 588888554433
No 3
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}
Probab=14.77 E-value=20 Score=31.54 Aligned_cols=24 Identities=13% Similarity=0.383 Sum_probs=19.2
Q ss_pred hHHHhhhccCCCCCCcchHHHHhh
Q 020444 126 NYMRREKWQWGAREDWRFNDMRSQ 149 (326)
Q Consensus 126 ~l~~R~~~~~~~~eD~Ry~~~r~~ 149 (326)
.-|.+.+++-++.|||||.++++-
T Consensus 26 ~~f~~~GlPt~k~E~WKyT~l~~l 49 (413)
T d1vh4a_ 26 QQLLRTGLPTRKHENWKYTPLEGL 49 (413)
T ss_dssp HHHHHHCCCCTTSTTCTTCCCHHH
T ss_pred HHHHHcCCCCCCCcCccCCCHHHH
Confidence 456777888777899999988763
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.84 E-value=83 Score=21.74 Aligned_cols=44 Identities=11% Similarity=0.429 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCCCc----------eEeeccchHHHHHH
Q 020444 48 HHPLLLANLLFFFNVNVLFWIISLIQNSNW----------MIDLYWTVIPVMLV 91 (326)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~s~~~~n~s----------~vD~~Ws~~~~~~~ 91 (326)
..-+..+..++++....+++.+-...++.+ .....|+++|.++.
T Consensus 30 ~~v~~i~~~I~~~V~~~l~~~~~~~r~~~~~~~~~~~~n~~LEiiWTviP~lIL 83 (100)
T d3dtub2 30 GFILVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVPIVIL 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTTCCSCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCccccCcchHHHHHHHHHHHHH
Confidence 334444444444444455555544333221 14455777776544
No 5
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.81 E-value=56 Score=22.45 Aligned_cols=16 Identities=19% Similarity=0.812 Sum_probs=11.1
Q ss_pred eEeeccchHHHHHHHH
Q 020444 78 MIDLYWTVIPVMLVHF 93 (326)
Q Consensus 78 ~vD~~Ws~~~~~~~~~ 93 (326)
.+...|+++|.++...
T Consensus 60 ~lEiiWTiiP~lILi~ 75 (90)
T d1v54b2 60 EVETIWTILPAIILIL 75 (90)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHH
Confidence 3667799998875543
No 6
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.88 E-value=28 Score=18.50 Aligned_cols=9 Identities=33% Similarity=0.737 Sum_probs=5.5
Q ss_pred chHHHHHHh
Q 020444 297 AEAYRLYQK 305 (326)
Q Consensus 297 ~~~Y~~Y~~ 305 (326)
+.+|++|++
T Consensus 15 ~aayqqykr 23 (27)
T d2e74g1 15 YAAYQQYKR 23 (27)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHhcC
Confidence 356777764
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=8.73 E-value=1.3e+02 Score=21.07 Aligned_cols=13 Identities=38% Similarity=1.224 Sum_probs=7.6
Q ss_pred EeeccchHHHHHH
Q 020444 79 IDLYWTVIPVMLV 91 (326)
Q Consensus 79 vD~~Ws~~~~~~~ 91 (326)
....|+++|.++.
T Consensus 77 lEi~WTviP~lIL 89 (107)
T d3ehbb2 77 IEVIWTLVPVLIL 89 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4456777776543
No 8
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=6.64 E-value=46 Score=23.46 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.3
Q ss_pred HHHHHHhhcCcccccCC
Q 020444 299 AYRLYQKTTSVWVPWFK 315 (326)
Q Consensus 299 ~Y~~Y~~~t~~fIP~~~ 315 (326)
|=+.||+.|.-+||..|
T Consensus 10 EIRk~Qkst~lLIpk~p 26 (95)
T d1tzyc_ 10 EIRRYQKSTELLIRKLP 26 (95)
T ss_dssp HHHHHHHCCSCCSCHHH
T ss_pred HHHHHhCCccccccccc
Confidence 56789999999999865
No 9
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=4.31 E-value=56 Score=23.31 Aligned_cols=10 Identities=40% Similarity=0.597 Sum_probs=8.0
Q ss_pred ccccCchhHH
Q 020444 239 YYSRHPNYFG 248 (326)
Q Consensus 239 ~~sRHPNY~G 248 (326)
-+++|||..|
T Consensus 23 ~li~HPMeTG 32 (106)
T d1v8ha1 23 VVAQHPNEPG 32 (106)
T ss_dssp EEECCCCBCS
T ss_pred EEEECCCccc
Confidence 4688999877
No 10
>d1ytqa2 b.11.1.1 (A:104-194) beta-Crystallin {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.12 E-value=49 Score=22.80 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=16.2
Q ss_pred cccccccccccCchhHHHH
Q 020444 232 NLDRGLWYYSRHPNYFGEQ 250 (326)
Q Consensus 232 lit~Glw~~sRHPNY~Ge~ 250 (326)
-+.+|.|-.--||||-|.+
T Consensus 41 ~V~~G~Wv~Ye~~nf~G~~ 59 (91)
T d1ytqa2 41 RVQSGTWVGYQYPGYRGLQ 59 (91)
T ss_dssp EECSSCEEEEEETTTEEEE
T ss_pred EecCCCEEEEecCCcEEEE
Confidence 4678999999999998864
Done!