BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020448
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ACL|A Chain A, Crystal Structure Of Human Pirin In Complex With Triphenyl
Compound
Length = 296
Score = 324 bits (830), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 151/283 (53%), Positives = 204/283 (72%), Gaps = 2/283 (0%)
Query: 44 RMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETV 103
+ V V + +G GA VRR+IGR +L++LDPFL+ DEF P GFPDHPHRGFETV
Sbjct: 11 KKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETV 70
Query: 104 TYMLQGG-ITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSD 162
+Y+L+GG + H+DF GH G ++ GD+QWMTAGRGI+H+EMP E +GLQLW+NL SS+
Sbjct: 71 SYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSSE 130
Query: 163 KMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQ 222
KM+EP+YQE+ SEEI + DGV V +I+GE++G++S VYTRTPT++LDF L P A+ Q
Sbjct: 131 KMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQ 190
Query: 223 SIPETWNAFVYTIEGEGVFGTVNS-SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281
IP+ W +F+YTI G+ G ++ + H+ VL GD + N+ K+ FVLIAG+
Sbjct: 191 PIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGE 250
Query: 282 PLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
PL EPV+Q+GPFVMN+ EI Q I D++ KNGFE AK W+S+
Sbjct: 251 PLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSK 293
>pdb|1J1L|A Chain A, Crystal Structure Of Human Pirin: A Bcl-3 And Nuclear
Factor I Interacting Protein And A Cupin Superfamily
Member
Length = 290
Score = 311 bits (798), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 147/283 (51%), Positives = 198/283 (69%), Gaps = 2/283 (0%)
Query: 44 RMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETV 103
+ V V + +G GA VRR+IGR +L++LDPFL+ DEF P GFPDHPHRGFETV
Sbjct: 5 KKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETV 64
Query: 104 TYMLQGG-ITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSD 162
+Y+L+GG H+DF GH G + GD+QW TAGRGI+H+E P E +GLQLW+NL SS+
Sbjct: 65 SYLLEGGSXAHEDFCGHTGKXNPGDLQWXTAGRGILHAEXPCSEEPAHGLQLWVNLRSSE 124
Query: 163 KMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQ 222
K +EP+YQE+ SEEI + DGV V +I+GE++G++S VYTRTPT++LDF L P A+ Q
Sbjct: 125 KXVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQ 184
Query: 223 SIPETWNAFVYTIEGEGVFGTVNS-SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281
IP+ W +F+YTI G+ G ++ + H+ VL GD + N+ K+ FVLIAG+
Sbjct: 185 PIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGE 244
Query: 282 PLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
PL EPV+Q+GPFV N+ EI Q I D++ KNGFE AK W+S+
Sbjct: 245 PLREPVIQHGPFVXNTNEEISQAILDFRNAKNGFERAKTWKSK 287
>pdb|2P17|A Chain A, Crystal Structure Of Gk1651 From Geobacillus Kaustophilus
Length = 277
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 141/247 (57%), Gaps = 3/247 (1%)
Query: 70 GDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQ 129
G+ + DPFL+L E + F HPHRG ETVTY++ G + H D T+ GDVQ
Sbjct: 31 GNWQEYDPFLLLXE-DIFERGTFDVHPHRGIETVTYVISGELEHFDSKAGHSTLGPGDVQ 89
Query: 130 WMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRI 189
W TAGRG+VH E PA + LQLW+NL S+ K EPRYQ + S++ + +G +R+
Sbjct: 90 WXTAGRGVVHKEDPASGSTVHSLQLWVNLPSAYKXTEPRYQNLRSKDXPVRKEEGATIRV 149
Query: 190 IAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAV 249
+G S GV++P P ++ ++P + Q +P +N F+Y +EG GVFG N
Sbjct: 150 FSGSSKGVKAPTKNIVPVTXVEXIVEPGTTVVQDLPGHYNGFLYILEGSGVFGADNIEGK 209
Query: 250 SAHNVLVL--SLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIED 307
+ + + G+ + ++LR +L AG+P+NEPVV YGPFV N+ +I + I D
Sbjct: 210 AGQALFFSRHNRGEETELNVTAREKLRLLLYAGEPVNEPVVAYGPFVXNTPEQIREAIRD 269
Query: 308 YQLCKNG 314
YQ + G
Sbjct: 270 YQEGRFG 276
>pdb|1TQ5|A Chain A, Crystal Structure Of Yhhw From Escherichia Coli
Length = 242
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 80 MLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVH 139
++++ + GF HPH+ E +TY+L+G + HQD G+K + G+ Q +AG GI H
Sbjct: 42 VINDDVIEAGQGFGTHPHKDXEILTYVLEGTVEHQDSXGNKEQVPAGEFQIXSAGTGIRH 101
Query: 140 SEM-PAGEGVQNGLQLWINLSSSDKMIEPRYQE 171
SE P+ + Q+WI + I PRY++
Sbjct: 102 SEYNPSSTERLHLYQIWI--XPEENGITPRYEQ 132
>pdb|3C5M|A Chain A, Crystal Structure Of Oligogalacturonate Lyase (Vpa0088)
From Vibrio Parahaemolyticus. Northeast Structural
Genomics Consortium Target Vpr199
pdb|3C5M|B Chain B, Crystal Structure Of Oligogalacturonate Lyase (Vpa0088)
From Vibrio Parahaemolyticus. Northeast Structural
Genomics Consortium Target Vpr199
pdb|3C5M|C Chain C, Crystal Structure Of Oligogalacturonate Lyase (Vpa0088)
From Vibrio Parahaemolyticus. Northeast Structural
Genomics Consortium Target Vpr199
Length = 396
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 123 IHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAET 182
I+T D +W G + +S+ G++ + W L+S +K E Y P+ + + +
Sbjct: 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE-FYHTNPTCRLIKVDI 175
Query: 183 DGVEVRIIAGESMGVRSPVY 202
+ E+ +I ++ + P+Y
Sbjct: 176 ETGELEVIHQDTAWLGHPIY 195
>pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome
pdb|4GU5|B Chain B, Structure Of Full-Length Drosophila Cryptochrome
Length = 539
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 106 MLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVH---SEMPAGEGVQNGLQLWINLSSSD 162
+L G H T T W + G+ H + A V G +W++ S+ +
Sbjct: 370 LLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFE 429
Query: 163 KMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGV 197
++++ P KR + DG ++ E M V
Sbjct: 430 RLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNV 464
>pdb|4FAG|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans W104y Mutant In
Complex With Gentisate
pdb|4FBF|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans W104y Mutant
Length = 367
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 25/116 (21%)
Query: 152 LQLWINLSSSDKM-IEPRYQEIP-----SEEIKRAETDGVEVRIIAG---ESMGVRSP-- 200
+ LW L D M I P+ + +P S ++ A G V + G ++G+ +P
Sbjct: 36 IPLWTQLG--DLMPIHPKSKAVPHVWKWSTLLRLARKSGELVPVGRGGERRALGLANPGL 93
Query: 201 ---VYTRTPTMFLDFT-LKPRAQIHQSIPE---TWNAFVYTIEGEGVFGTVNSSAV 249
Y +PTM+ L PR ++ PE + NAF + +EGEGV+ VN V
Sbjct: 94 GGNAYI-SPTMYAGIQYLGPR----ETAPEHRHSQNAFRFVVEGEGVWTVVNGDPV 144
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 172 IPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRA 218
+P E++ E DG + + GES+G + R P +F ++ +P A
Sbjct: 330 LPGVELRLVEEDGTPIAALDGESVG---EIQVRGPNLFTEYLNRPDA 373
>pdb|2PHD|A Chain A, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|B Chain B, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|C Chain C, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|D Chain D, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|3NJZ|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Salicylate
pdb|3NKT|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Naphthoate
pdb|3NL1|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Gentisate
Length = 368
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 184 GVEVRIIAGESMGVRSPVYTRTPTMFLDFT-LKPRAQIHQSIPE---TWNAFVYTIEGEG 239
G E R + + G+ Y +PTM+ L PR ++ PE + NAF + +EGEG
Sbjct: 80 GGERRALGLANPGLGGNAYI-SPTMWAGIQYLGPR----ETAPEHRHSQNAFRFVVEGEG 134
Query: 240 VFGTVNSSAV 249
V+ VN V
Sbjct: 135 VWTVVNGDPV 144
>pdb|3NST|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans
pdb|3NVC|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans In
Complex With Salicylate
pdb|3NW4|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans In
Complex With Gentisate
Length = 368
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 184 GVEVRIIAGESMGVRSPVYTRTPTMFLDFT-LKPRAQIHQSIPE---TWNAFVYTIEGEG 239
G E R + + G+ Y +PTM+ L PR ++ PE + NAF + +EGEG
Sbjct: 80 GGERRALGLANPGLGGNAYI-SPTMWAAIQYLGPR----ETAPEHRHSQNAFRFVVEGEG 134
Query: 240 VFGTVNSSAV 249
V+ VN V
Sbjct: 135 VWTVVNGDPV 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,283,304
Number of Sequences: 62578
Number of extensions: 449204
Number of successful extensions: 868
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 859
Number of HSP's gapped (non-prelim): 12
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)