Query 020448
Match_columns 326
No_of_seqs 201 out of 1571
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1741 Pirin-related protein 100.0 5E-73 1.1E-77 531.4 28.2 268 40-314 1-276 (276)
2 PF02678 Pirin: Pirin; InterP 100.0 6.9E-36 1.5E-40 244.2 8.3 97 60-156 1-107 (107)
3 PF05726 Pirin_C: Pirin C-term 100.0 1.4E-31 3.1E-36 217.8 12.6 104 209-314 1-104 (104)
4 PRK11171 hypothetical protein; 98.9 7.7E-07 1.7E-11 84.0 24.1 182 85-278 67-256 (266)
5 TIGR03214 ura-cupin putative a 98.6 1.3E-05 2.8E-10 75.5 21.6 202 60-278 41-251 (260)
6 TIGR03404 bicupin_oxalic bicup 98.5 1.3E-05 2.9E-10 79.0 20.7 207 85-303 73-346 (367)
7 PRK13290 ectC L-ectoine syntha 97.3 0.0047 1E-07 52.0 11.7 89 182-282 19-110 (125)
8 PF07883 Cupin_2: Cupin domain 97.2 0.00055 1.2E-08 50.4 4.3 67 86-155 5-71 (71)
9 PF07883 Cupin_2: Cupin domain 97.0 0.0048 1E-07 45.3 8.3 66 212-278 3-70 (71)
10 TIGR03214 ura-cupin putative a 96.9 0.0086 1.9E-07 56.4 10.3 87 59-152 163-249 (260)
11 smart00835 Cupin_1 Cupin. This 96.8 0.049 1.1E-06 46.4 13.8 102 181-286 8-116 (146)
12 COG3257 GlxB Uncharacterized p 96.5 0.18 3.9E-06 46.3 15.9 152 94-258 77-234 (264)
13 PRK11171 hypothetical protein; 96.2 0.037 7.9E-07 52.3 10.0 91 56-152 163-254 (266)
14 PRK09943 DNA-binding transcrip 96.1 0.059 1.3E-06 47.8 10.5 74 207-281 107-182 (185)
15 PRK13290 ectC L-ectoine syntha 96.0 0.057 1.2E-06 45.4 8.9 89 60-159 20-109 (125)
16 TIGR02451 anti_sig_ChrR anti-s 95.9 0.0096 2.1E-07 54.6 4.4 62 85-154 133-194 (215)
17 COG4101 Predicted mannose-6-ph 95.5 0.029 6.3E-07 46.8 5.3 76 75-152 41-119 (142)
18 COG1917 Uncharacterized conser 95.5 0.075 1.6E-06 44.3 7.8 74 80-156 44-117 (131)
19 PF12973 Cupin_7: ChrR Cupin-l 95.4 0.013 2.9E-07 46.0 2.9 73 59-143 8-80 (91)
20 COG3257 GlxB Uncharacterized p 95.3 0.086 1.9E-06 48.4 8.1 68 211-279 65-135 (264)
21 PF12973 Cupin_7: ChrR Cupin-l 95.3 0.21 4.6E-06 39.1 9.5 66 208-279 25-90 (91)
22 TIGR03404 bicupin_oxalic bicup 94.8 0.19 4.1E-06 49.8 9.6 75 79-155 245-323 (367)
23 PF00190 Cupin_1: Cupin; Inte 94.2 1.7 3.6E-05 36.8 13.0 87 178-269 8-108 (144)
24 smart00835 Cupin_1 Cupin. This 94.2 0.32 6.9E-06 41.4 8.6 74 79-156 30-108 (146)
25 PRK10371 DNA-binding transcrip 93.5 0.19 4.1E-06 48.0 6.6 68 71-142 12-85 (302)
26 COG1917 Uncharacterized conser 93.4 0.58 1.3E-05 38.9 8.7 63 206-268 42-105 (131)
27 TIGR01479 GMP_PMI mannose-1-ph 93.3 0.49 1.1E-05 48.3 9.6 77 205-282 374-452 (468)
28 COG0662 {ManC} Mannose-6-phosp 93.3 0.88 1.9E-05 38.0 9.5 76 206-282 35-112 (127)
29 PF05899 Cupin_3: Protein of u 92.8 0.28 6.2E-06 37.2 5.4 48 92-141 19-67 (74)
30 PF11699 CENP-C_C: Mif2/CENP-C 92.6 1.1 2.5E-05 35.2 8.6 66 212-278 17-84 (85)
31 COG3837 Uncharacterized conser 92.5 0.58 1.3E-05 40.9 7.4 72 83-155 46-118 (161)
32 PRK15460 cpsB mannose-1-phosph 92.5 0.67 1.5E-05 47.5 9.1 77 203-280 381-459 (478)
33 PRK09943 DNA-binding transcrip 92.1 1.5 3.3E-05 38.7 10.0 61 93-159 122-182 (185)
34 TIGR01479 GMP_PMI mannose-1-ph 92.1 0.88 1.9E-05 46.4 9.4 71 83-160 380-452 (468)
35 PF02311 AraC_binding: AraC-li 92.0 0.43 9.4E-06 38.2 5.9 65 89-159 13-77 (136)
36 COG3837 Uncharacterized conser 92.0 0.66 1.4E-05 40.6 7.1 69 211-280 46-119 (161)
37 PF01050 MannoseP_isomer: Mann 91.4 1.4 3.1E-05 38.3 8.7 69 207-276 63-133 (151)
38 PF04962 KduI: KduI/IolB famil 90.7 0.66 1.4E-05 43.9 6.4 68 212-282 32-109 (261)
39 PF06249 EutQ: Ethanolamine ut 90.4 1.6 3.5E-05 38.1 8.0 63 211-279 81-145 (152)
40 COG4766 EutQ Ethanolamine util 89.9 0.9 2E-05 39.6 6.0 48 229-279 119-168 (176)
41 COG0662 {ManC} Mannose-6-phosp 89.7 4.6 0.0001 33.6 10.1 73 81-156 38-110 (127)
42 PF05962 HutD: HutD; InterPro 88.9 0.6 1.3E-05 41.8 4.4 51 225-279 132-183 (184)
43 TIGR02272 gentisate_1_2 gentis 88.7 9.1 0.0002 37.6 12.8 60 86-148 88-147 (335)
44 COG4101 Predicted mannose-6-ph 88.7 3.4 7.3E-05 34.7 8.3 79 205-284 44-127 (142)
45 TIGR02451 anti_sig_ChrR anti-s 88.0 2.1 4.6E-05 39.2 7.5 73 207-283 127-199 (215)
46 PF05899 Cupin_3: Protein of u 85.8 2 4.4E-05 32.5 5.1 51 214-267 14-66 (74)
47 PF14499 DUF4437: Domain of un 85.7 15 0.00032 34.7 11.9 74 59-141 20-95 (251)
48 PRK10296 DNA-binding transcrip 85.2 2.7 5.8E-05 39.1 6.8 61 91-156 35-95 (278)
49 PRK04190 glucose-6-phosphate i 85.1 6.5 0.00014 35.5 8.9 87 79-173 68-166 (191)
50 PF06339 Ectoine_synth: Ectoin 84.1 15 0.00031 31.1 9.8 75 207-284 35-112 (126)
51 PRK15457 ethanolamine utilizat 83.6 7 0.00015 36.4 8.5 56 218-278 167-224 (233)
52 PLN02288 mannose-6-phosphate i 82.1 13 0.00028 37.3 10.5 56 206-262 333-391 (394)
53 PF06249 EutQ: Ethanolamine ut 79.2 3.9 8.5E-05 35.7 5.0 41 99-140 94-134 (152)
54 PF02311 AraC_binding: AraC-li 79.1 7.9 0.00017 30.7 6.6 51 228-279 23-75 (136)
55 PF00190 Cupin_1: Cupin; Inte 78.6 5.5 0.00012 33.6 5.7 67 86-155 41-118 (144)
56 PRK15460 cpsB mannose-1-phosph 77.7 14 0.00031 37.9 9.4 73 83-160 389-461 (478)
57 COG2140 Thermophilic glucose-6 76.5 16 0.00034 33.5 8.3 69 86-156 87-161 (209)
58 PRK15131 mannose-6-phosphate i 75.4 58 0.0013 32.6 12.8 57 207-266 321-379 (389)
59 PRK13501 transcriptional activ 75.3 4 8.7E-05 38.3 4.4 60 91-156 30-89 (290)
60 TIGR03037 anthran_nbaC 3-hydro 74.6 7.7 0.00017 34.1 5.6 79 229-310 49-147 (159)
61 PF11142 DUF2917: Protein of u 74.5 28 0.00061 25.6 7.8 54 212-267 2-58 (63)
62 PLN00212 glutelin; Provisional 71.2 48 0.001 34.3 11.3 76 204-280 345-427 (493)
63 COG3450 Predicted enzyme of th 70.7 8.8 0.00019 32.0 4.8 46 91-138 56-102 (116)
64 TIGR02297 HpaA 4-hydroxyphenyl 70.2 26 0.00056 32.5 8.5 51 90-144 34-85 (287)
65 PRK13500 transcriptional activ 69.9 7.9 0.00017 37.0 5.1 50 90-143 59-108 (312)
66 COG3718 IolB Uncharacterized e 69.4 23 0.0005 33.2 7.6 68 212-282 34-112 (270)
67 PF01050 MannoseP_isomer: Mann 69.3 22 0.00047 30.9 7.2 71 82-155 66-136 (151)
68 PF14525 AraC_binding_2: AraC- 68.4 43 0.00093 27.9 8.8 68 207-276 34-102 (172)
69 TIGR03037 anthran_nbaC 3-hydro 67.6 26 0.00055 30.9 7.3 51 87-141 36-90 (159)
70 PF14326 DUF4384: Domain of un 65.4 42 0.00091 25.6 7.4 54 214-267 3-65 (83)
71 PRK13503 transcriptional activ 65.2 9.3 0.0002 35.2 4.4 48 90-141 26-73 (278)
72 PHA02984 hypothetical protein; 64.5 40 0.00088 32.1 8.3 84 223-308 88-176 (286)
73 PRK15457 ethanolamine utilizat 63.6 12 0.00027 34.8 4.7 41 96-137 171-211 (233)
74 COG3435 Gentisate 1,2-dioxygen 61.5 96 0.0021 30.3 10.4 190 87-285 100-338 (351)
75 COG1482 ManA Phosphomannose is 61.1 1.6E+02 0.0034 28.8 12.0 40 228-267 260-301 (312)
76 PLN00212 glutelin; Provisional 60.3 21 0.00045 37.0 6.1 55 86-142 355-414 (493)
77 PF13464 DUF4115: Domain of un 59.9 34 0.00073 25.7 5.9 53 228-285 7-61 (77)
78 PRK04190 glucose-6-phosphate i 59.3 1.4E+02 0.003 27.0 10.9 77 204-280 65-155 (191)
79 PF05775 AfaD: Enterobacteria 58.9 79 0.0017 26.2 8.2 78 149-239 25-110 (111)
80 COG3806 ChrR Transcriptional a 56.7 30 0.00066 31.6 5.8 50 84-141 133-182 (216)
81 PRK13502 transcriptional activ 56.5 22 0.00048 33.0 5.3 49 91-143 30-78 (282)
82 COG3450 Predicted enzyme of th 56.5 17 0.00038 30.2 4.0 34 228-261 63-98 (116)
83 PRK00924 5-keto-4-deoxyuronate 55.7 73 0.0016 30.5 8.6 56 226-282 72-131 (276)
84 PRK13264 3-hydroxyanthranilate 52.2 33 0.00071 30.7 5.3 79 229-310 55-153 (177)
85 PF12852 Cupin_6: Cupin 49.4 58 0.0013 28.3 6.5 51 215-265 21-75 (186)
86 PRK13264 3-hydroxyanthranilate 47.5 46 0.001 29.8 5.5 51 88-141 43-96 (177)
87 PF05523 FdtA: WxcM-like, C-te 44.6 1.3E+02 0.0029 25.1 7.7 71 214-285 40-116 (131)
88 PF05225 HTH_psq: helix-turn-h 44.3 22 0.00048 24.3 2.4 19 297-315 1-19 (45)
89 PF06339 Ectoine_synth: Ectoin 44.0 39 0.00085 28.6 4.2 103 43-155 3-107 (126)
90 PF14499 DUF4437: Domain of un 43.3 2E+02 0.0043 27.2 9.3 72 184-268 21-97 (251)
91 KOG2757 Mannose-6-phosphate is 41.9 1.5E+02 0.0032 29.7 8.4 63 205-268 331-395 (411)
92 PF15220 HILPDA: Hypoxia-induc 41.0 19 0.0004 26.1 1.6 15 86-100 49-63 (63)
93 PRK11396 hypothetical protein; 40.4 64 0.0014 29.2 5.3 52 224-280 128-179 (191)
94 PF05995 CDO_I: Cysteine dioxy 39.5 1.5E+02 0.0032 26.1 7.6 70 86-156 82-163 (175)
95 PHA02283 hypothetical protein 36.6 1.6E+02 0.0035 26.5 7.1 75 227-317 47-125 (210)
96 PF04209 HgmA: homogentisate 1 36.0 1.7E+02 0.0036 29.9 8.0 68 225-296 143-213 (424)
97 PF05726 Pirin_C: Pirin C-term 33.3 32 0.00069 27.5 2.1 50 86-138 6-55 (104)
98 COG4297 Uncharacterized protei 29.2 2E+02 0.0044 24.9 6.3 71 232-310 68-143 (163)
99 PLN02254 gibberellin 3-beta-di 29.0 1.1E+02 0.0024 30.1 5.5 30 79-108 212-243 (358)
100 COG4766 EutQ Ethanolamine util 28.8 1.1E+02 0.0024 26.9 4.7 42 99-141 117-158 (176)
101 PRK10296 DNA-binding transcrip 28.3 1.5E+02 0.0033 27.3 6.1 35 228-263 43-79 (278)
102 TIGR00218 manA mannose-6-phosp 27.8 3.9E+02 0.0085 25.4 8.9 46 228-277 253-300 (302)
103 PF07944 DUF1680: Putative gly 27.3 2.6E+02 0.0057 28.8 8.1 54 238-295 456-519 (520)
104 PRK14113 urease accessory prot 26.2 2.7E+02 0.0059 24.2 6.8 32 247-281 49-80 (152)
105 PLN02515 naringenin,2-oxogluta 26.2 1.4E+02 0.003 29.5 5.6 50 78-133 196-247 (358)
106 COG2140 Thermophilic glucose-6 25.9 5.3E+02 0.011 23.8 9.0 71 211-282 84-163 (209)
107 COG3717 KduI 5-keto 4-deoxyuro 25.6 1.4E+02 0.003 28.2 5.0 47 236-283 86-134 (278)
108 PRK13502 transcriptional activ 24.9 2E+02 0.0043 26.5 6.2 39 228-267 38-78 (282)
109 PRK11507 ribosome-associated p 24.9 53 0.0011 25.0 1.8 38 227-265 27-68 (70)
110 PRK13500 transcriptional activ 24.2 1.6E+02 0.0035 27.9 5.6 39 228-267 68-108 (312)
111 PRK15222 putative pilin struct 24.0 5E+02 0.011 22.8 8.4 55 95-172 33-87 (156)
112 PRK13501 transcriptional activ 23.5 1.5E+02 0.0032 27.6 5.1 38 228-266 38-77 (290)
113 TIGR02297 HpaA 4-hydroxyphenyl 23.2 1.6E+02 0.0035 27.0 5.3 38 229-267 45-84 (287)
114 PRK09685 DNA-binding transcrip 22.9 2.6E+02 0.0056 26.0 6.6 40 227-267 70-111 (302)
115 PRK14112 urease accessory prot 22.8 4E+02 0.0087 23.1 7.2 32 247-281 55-86 (149)
116 PLN02997 flavonol synthase 22.1 1.8E+02 0.004 28.2 5.5 30 79-108 185-216 (325)
117 PF04151 PPC: Bacterial pre-pe 22.1 1.9E+02 0.0042 20.9 4.4 32 207-238 2-34 (70)
118 PLN02750 oxidoreductase, 2OG-F 21.8 2.1E+02 0.0046 27.8 5.9 31 78-108 194-226 (345)
119 PF03451 HELP: HELP motif; In 21.2 75 0.0016 24.5 2.0 27 114-140 49-75 (77)
120 PLN02639 oxidoreductase, 2OG-F 20.5 2.2E+02 0.0048 27.7 5.7 31 78-108 191-223 (337)
121 PRK13263 ureE urease accessory 20.4 4.3E+02 0.0093 24.2 7.1 31 247-280 55-85 (206)
122 PRK13261 ureE urease accessory 20.1 5E+02 0.011 22.4 7.3 32 247-281 54-85 (159)
No 1
>COG1741 Pirin-related protein [General function prediction only]
Probab=100.00 E-value=5e-73 Score=531.43 Aligned_cols=268 Identities=42% Similarity=0.711 Sum_probs=238.4
Q ss_pred cccccccceEEcCCccCCCCceEEEEecCCCCCCCC-CceEEeeccc---CCCCCCCCCCCCCCceEEEEEeeceEEEec
Q 020448 40 FSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSL-DPFLMLDEFS---VSPPAGFPDHPHRGFETVTYMLQGGITHQD 115 (326)
Q Consensus 40 ~~~~r~i~~~~~~~~~~~G~g~~v~r~~~~~~~~~~-dPfl~lD~~~---~~~~~GF~~HPHrG~EtvTyvl~G~l~H~D 115 (326)
|...|.+.++.......+|.|.+..|.++......+ +||++||++. +.|+.+|++|||||||||||||+|+++|+|
T Consensus 1 m~~~r~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~~~pF~~ld~~~~~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrD 80 (276)
T COG1741 1 MITIRTAIERGIGHATGDWLGVRLTRSFGPYYDPALVGPFLFLDVIGPDVLAPGRGFPPHPHRGLETVTYVLDGEIEHRD 80 (276)
T ss_pred CccchhHHHhCcccccCCCCCeeEEEEecCCcCccccCCccceeecccccccCCCcCCCCCCCCcEEEEEEEccEEEEee
Confidence 445677777776666677666666666665554445 9999999998 567778999999999999999999999999
Q ss_pred CCCCeeeeeCCcEEEEecCCCeEEEeeeC--CCCceeEEEEEeccCCCCCCCCCCccccC-CCccceecCCCeEEEEEeC
Q 020448 116 FSGHKGTIHTGDVQWMTAGRGIVHSEMPA--GEGVQNGLQLWINLSSSDKMIEPRYQEIP-SEEIKRAETDGVEVRIIAG 192 (326)
Q Consensus 116 S~Gn~~~i~~GdvQwMtAGsGI~HsE~~~--~~~~~~~lQLWinLP~~~k~~~P~Y~~~~-~~~iP~~~~~g~~~rViaG 192 (326)
|+||+++|+||||||||||+||+|||+|. .++++|+||||||||++.|+.+|+|+++. ++++|.... +..+||++|
T Consensus 81 S~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~lP~~~k~~~P~yq~~~~~~~~p~~~~-g~~~rvi~G 159 (276)
T COG1741 81 SLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVNLPAADKMIAPRYQHLAFPDEIPRVEL-GLTARVIAG 159 (276)
T ss_pred cCCceeeecccceeEEcCCCceeecccCCccCCCccceeeeecCCchhhccCCcccccccCcccCceeec-ceEEEEecc
Confidence 99999999999999999999999999997 46799999999999999999999999999 899999876 889999999
Q ss_pred CCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCcee-ecCccEEEEcCCCeEEEEecCCC
Q 020448 193 ESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSA-VSAHNVLVLSLGDGLSAWNRSSK 271 (326)
Q Consensus 193 ~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~~~-l~~~d~~~l~~g~~l~i~a~~~~ 271 (326)
++.|..+|+...+ +.++|+.|++|+++.++ |+++++||||++|.+.|+| +. +....+++++ |+.+++++.++.
T Consensus 160 ~~~g~~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~g---~~~~~~~~l~i~~-g~~i~l~a~~~~ 233 (276)
T COG1741 160 RDGGLSSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVNG---QHETDGDGLAILD-GDEITLVADSPA 233 (276)
T ss_pred ccCCcccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEcc---cccccccceEEec-CCeEEEEecCCC
Confidence 9999999999999 99999999999999999 9999999999999999999 55 5555555555 888888886456
Q ss_pred CeEEEEEeeccCCCceeeeCCcccCcHHHHHHHHHHHhccCCC
Q 020448 272 QLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNG 314 (326)
Q Consensus 272 ~a~~LL~~G~pl~epi~~~GpFVmnt~~ei~~A~~dy~~g~~g 314 (326)
++++|||+|+|++||+++||||||||+|||+||++||++|+|.
T Consensus 234 ~a~vLL~~g~P~~~~~~~~g~fV~~s~e~i~~a~~~~~~g~f~ 276 (276)
T COG1741 234 GARVLLLDGPPLGEPIVIYGPFVMNSKEEIEQAKRDWREGRFP 276 (276)
T ss_pred CeEEEEEcCCCCCCceeEECCcccCCHHHHHHHHHHHHcCCCC
Confidence 7999999999999999999999999999999999999999974
No 2
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=100.00 E-value=6.9e-36 Score=244.25 Aligned_cols=97 Identities=59% Similarity=1.017 Sum_probs=86.9
Q ss_pred ceEEEEecCC-CCCCCCCceEEeecccC---C--C---CCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEE
Q 020448 60 GAVVRRAIGR-GDLRSLDPFLMLDEFSV---S--P---PAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQW 130 (326)
Q Consensus 60 g~~v~r~~~~-~~~~~~dPfl~lD~~~~---~--~---~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQw 130 (326)
|++|+|.+|. .....++||+++|++.. . + +.||++|||+|+||||||++|++.|+||+||.++|++|+|||
T Consensus 1 ~~~~~r~~~~~~~~~~~~pF~f~d~~~p~~~~~g~d~i~~gf~~HPH~g~eivTyv~~G~~~H~Ds~G~~~~l~~G~vq~ 80 (107)
T PF02678_consen 1 GFRVRRVLPNHGWLQSRDPFSFLDYFDPANMAFGPDYIGAGFPMHPHRGFEIVTYVLEGELRHRDSLGNRGVLRAGDVQW 80 (107)
T ss_dssp -EEECCGTCSTCCGCCCCTEEEEEEEETCECSETTEEETTEEEEEEECSEEEEEEEEESEEEEEETTSEEEEEETTEEEE
T ss_pred CeEEeecCCCCCcccccCccCcccccCccccCCCccccCCCCCCcCCCCceEEEEEecCEEEEECCCCCeeEeCCCeEEE
Confidence 6899999998 67789999999999763 1 2 579999999999999999999999999999999999999999
Q ss_pred EecCCCeEEEeeeCCC-CceeEEEEEe
Q 020448 131 MTAGRGIVHSEMPAGE-GVQNGLQLWI 156 (326)
Q Consensus 131 MtAGsGI~HsE~~~~~-~~~~~lQLWi 156 (326)
|+||+||.|+|+|.++ +++++|||||
T Consensus 81 m~AG~Gi~H~E~~~~~~~~~~~lQlWi 107 (107)
T PF02678_consen 81 MTAGSGIVHSERNASDGGPLHGLQLWI 107 (107)
T ss_dssp EE-TTTEEEEEEE-TSSS-EEEEEEEE
T ss_pred EeCCCCceEEEecCCCCCeEEEEEEcC
Confidence 9999999999999885 8999999997
No 3
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=99.97 E-value=1.4e-31 Score=217.85 Aligned_cols=104 Identities=43% Similarity=0.755 Sum_probs=86.4
Q ss_pred EEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeeccCCCcee
Q 020448 209 FLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVV 288 (326)
Q Consensus 209 ~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~epi~ 288 (326)
|+|++|++|+++++++|+++++++||++|++.|++.. ..+.+++++.|++++.+++++.+ +++||||++|+||+|||+
T Consensus 1 y~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~~~~-~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~GePl~Epi~ 78 (104)
T PF05726_consen 1 YLDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVGGEE-DPLEAGQLVVLEDGDEIELTAGE-EGARFLLLGGEPLNEPIV 78 (104)
T ss_dssp EEEEEE-TT-EEEEEEETT-EEEEEEEESEEEETTTT-EEEETTEEEEE-SECEEEEEESS-SSEEEEEEEE----S--E
T ss_pred CEEEEECCCCEEEeecCCCCEEEEEEEECcEEECCCc-ceECCCcEEEECCCceEEEEECC-CCcEEEEEEccCCCCCEE
Confidence 7899999999999999999999999999999999821 35999999999988999999963 799999999999999999
Q ss_pred eeCCcccCcHHHHHHHHHHHhccCCC
Q 020448 289 QYGPFVMNSQAEIDQTIEDYQLCKNG 314 (326)
Q Consensus 289 ~~GpFVmnt~~ei~~A~~dy~~g~~g 314 (326)
+||||||||++||+||++|||+|+||
T Consensus 79 ~~GpFVmnt~eeI~qA~~dy~~g~fg 104 (104)
T PF05726_consen 79 QYGPFVMNTREEIEQAFEDYQNGKFG 104 (104)
T ss_dssp EETTEEESSHHHHHHHHHHHHCT-T-
T ss_pred EECCcccCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999997
No 4
>PRK11171 hypothetical protein; Provisional
Probab=98.91 E-value=7.7e-07 Score=83.99 Aligned_cols=182 Identities=20% Similarity=0.236 Sum_probs=122.4
Q ss_pred cCCCCCCCCCCCCC-CceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCC--
Q 020448 85 SVSPPAGFPDHPHR-GFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSS-- 161 (326)
Q Consensus 85 ~~~~~~GF~~HPHr-G~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~-- 161 (326)
.+.|+.+...|.|. +.|.+-||++|+++-.. -|..-.|.+||.-...++ ..|+=.|..+++++. ||+.-|-+
T Consensus 67 ~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~-~g~~~~L~~GDsi~~p~~--~~H~~~N~g~~~a~~--l~v~~~y~~~ 141 (266)
T PRK11171 67 EVEPGGGSDQPEPDEGAETFLFVVEGEITLTL-EGKTHALSEGGYAYLPPG--SDWTLRNAGAEDARF--HWIRKRYEPV 141 (266)
T ss_pred EECCCCcCCCCCCCCCceEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCC--CCEEEEECCCCCEEE--EEEEcCCeEc
Confidence 35566566666665 88999999999988764 255678999999999988 568888877777665 56642211
Q ss_pred CCCCCCCccccCCCccceec---CCCeEEEE-EeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeec
Q 020448 162 DKMIEPRYQEIPSEEIKRAE---TDGVEVRI-IAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEG 237 (326)
Q Consensus 162 ~k~~~P~Y~~~~~~~iP~~~---~~g~~~rV-iaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G 237 (326)
....+|.-.--...+++... .+|..++. +.+. -....+..+..+.|++|+++.+.-..+..-.+||++|
T Consensus 142 ~~~~~p~~~~~~~~d~~~~~~~g~~g~~~~~~~~~p-------~~~~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G 214 (266)
T PRK11171 142 EGHEAPEAFVGNESDIEPIPMPGTDGVWATTRLVDP-------EDLRFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEG 214 (266)
T ss_pred CCCCCCCeEecchhcccccccCCCCCeEEEEEeeCc-------hhcCCCcEEEEEEECCCCEEccCcCCCceEEEEEEeC
Confidence 11224431111122333222 23444443 3222 1223346788899999999887545677799999999
Q ss_pred ceEEcC-cCceeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448 238 EGVFGT-VNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI 278 (326)
Q Consensus 238 ~~~i~g-~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~ 278 (326)
++++.. .+...|.+||.+.+..+..-.+.+.+++.+++|++
T Consensus 215 ~~~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~ 256 (266)
T PRK11171 215 KGVYRLNNDWVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLY 256 (266)
T ss_pred EEEEEECCEEEEeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence 988742 23378999999999977777888766678888876
No 5
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.60 E-value=1.3e-05 Score=75.49 Aligned_cols=202 Identities=13% Similarity=0.153 Sum_probs=124.0
Q ss_pred ceEEEEecCCCCC--CCCCceEEeecccCCCCCCC-CCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCC
Q 020448 60 GAVVRRAIGRGDL--RSLDPFLMLDEFSVSPPAGF-PDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRG 136 (326)
Q Consensus 60 g~~v~r~~~~~~~--~~~dPfl~lD~~~~~~~~GF-~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsG 136 (326)
+++++.+.....- ..|..+++ .+.|+.+. ..|+|.|.|.+-||++|+++=.. -|..-.|++||.-.+.||.
T Consensus 41 ~~~~~~l~~P~~g~~~~f~~~~v----~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~-~g~~~~L~~Gd~~y~pa~~- 114 (260)
T TIGR03214 41 NTDIWILSRPKLGFAATFVQYIV----EVHPGGGNTTGFGGEGIETFLFVISGEVNVTA-EGETHELREGGYAYLPPGS- 114 (260)
T ss_pred ccEEEEEcCCCCCCCCcEEEEEE----EECCCCcCCCCCCCCceEEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCCC-
Confidence 4556555543211 23333333 34554443 35678999999999999986552 2455699999999999996
Q ss_pred eEEEeeeCCCCceeEEEEEeccCCC-CCC-CCCCccccCCCcccee---cCCCeEEEEEeCCCCCCcCcccccCccEEEE
Q 020448 137 IVHSEMPAGEGVQNGLQLWINLSSS-DKM-IEPRYQEIPSEEIKRA---ETDGVEVRIIAGESMGVRSPVYTRTPTMFLD 211 (326)
Q Consensus 137 I~HsE~~~~~~~~~~lQLWinLP~~-~k~-~~P~Y~~~~~~~iP~~---~~~g~~~rViaG~~~g~~sp~~~~~~~~~~d 211 (326)
.|.=.|.++.++++ +|+.-+-+ .+. .+|.-.--..+++|.. ..++..+|.+. .. ...-+..+-.
T Consensus 115 -~H~~~N~~~~~a~~--l~v~k~y~~~~g~~~~~~vvg~~~dv~~~~~~g~~~~~~~~ll-p~-------~~~~~~~~~~ 183 (260)
T TIGR03214 115 -KWTLANAQAEDARF--FLYKKRYQPVEGLHAPELVVGNEKDIEPEPYEGMDDVILTTLL-PK-------ELAFDMNVHI 183 (260)
T ss_pred -CEEEEECCCCCEEE--EEEEeeeEEcCCCCCCCeeecCHHHCCccccCCCCcEEEEEeC-ch-------hcCCCcEEEE
Confidence 57777776666665 57642211 111 2332111111233322 23456676665 31 1222556666
Q ss_pred EEECCCCeEEEecCCCCeEEEEEeecceEEcC-cCceeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448 212 FTLKPRAQIHQSIPETWNAFVYTIEGEGVFGT-VNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI 278 (326)
Q Consensus 212 i~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g-~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~ 278 (326)
++|++|++.-+.......--+||++|...+.. .+...+++||.+.+..+..=.+.+.++++.++||.
T Consensus 184 ~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~y 251 (260)
T TIGR03214 184 LSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLY 251 (260)
T ss_pred EEECCCcccCCcccccceeEEEEEeceEEEEECCEEEEecCCCEEEECCCCCEEEEecCCCcEEEEEE
Confidence 89999998743333344567799999987742 23378999999999977655667766677888774
No 6
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.53 E-value=1.3e-05 Score=79.01 Aligned_cols=207 Identities=19% Similarity=0.185 Sum_probs=120.3
Q ss_pred cCCCCCCCCCCCCCCceEEEEEeeceEE--EecCCCCee--eeeCCcEEEEecCCCeEEEeeeCCCCceeEEEE------
Q 020448 85 SVSPPAGFPDHPHRGFETVTYMLQGGIT--HQDFSGHKG--TIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQL------ 154 (326)
Q Consensus 85 ~~~~~~GF~~HPHrG~EtvTyvl~G~l~--H~DS~Gn~~--~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQL------ 154 (326)
.+.+++..++|.|++.| +.||++|+++ -.|+-|..- .|++||+-.+.+| +.|.-.+.. +.++.+=+
T Consensus 73 ~l~pG~~~~~HwH~~~E-~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g--~~H~~~n~~-~~~~~l~vf~~~~f 148 (367)
T TIGR03404 73 RLEPGAIRELHWHKEAE-WAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPG--IPHSLQGLD-EGCEFLLVFDDGNF 148 (367)
T ss_pred EEcCCCCCCcccCCCce-EEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCC--CeEEEEECC-CCeEEEEEeCCccc
Confidence 46677778999999999 7999999974 344445544 4999999999876 678877653 22322110
Q ss_pred ----------Eec-cCCC---------------CCCCCCCccc-------------------------cCCCccceecCC
Q 020448 155 ----------WIN-LSSS---------------DKMIEPRYQE-------------------------IPSEEIKRAETD 183 (326)
Q Consensus 155 ----------Win-LP~~---------------~k~~~P~Y~~-------------------------~~~~~iP~~~~~ 183 (326)
|+. +|.+ .+ .+-.|.. ...++.+.....
T Consensus 149 ~~~~~~~~~~~l~~~p~~Vla~~f~l~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 227 (367)
T TIGR03404 149 SEDGTFLVTDWLAHTPKDVLAKNFGVPESAFDNLP-LKELYIFPGTVPGPLDQEAVTGPAGEVPGPFTYHLSEQKPKQVP 227 (367)
T ss_pred CCcceeeHHHHHHhCCHHHHHHHhCCCHHHHHhcc-ccCceEEecCCCCccccccCcCCCCCCCccEEEEhhhCCceecC
Confidence 111 1110 00 0000110 000011111122
Q ss_pred CeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--C----cCceeecCccEEEE
Q 020448 184 GVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--T----VNSSAVSAHNVLVL 257 (326)
Q Consensus 184 g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g----~~~~~l~~~d~~~l 257 (326)
|+++|++... .-| ....+.+..+.|++|+....-......-+.||++|++++. + .+...+++||++.+
T Consensus 228 gG~~~~~~~~----~~p--~~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~i 301 (367)
T TIGR03404 228 GGTVRIADST----NFP--VSKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYV 301 (367)
T ss_pred CceEEEEChh----hcc--CcceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEE
Confidence 3344443221 112 2234667788999999766444444557999999999774 1 11257999999999
Q ss_pred cCCCeEEEEecCCCCeEEEEEeeccCCCceeeeCCcccCcHHHHHH
Q 020448 258 SLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQ 303 (326)
Q Consensus 258 ~~g~~l~i~a~~~~~a~~LL~~G~pl~epi~~~GpFVmnt~~ei~~ 303 (326)
..|..=.+++.++++++||++--.+--+-| .-..+...+..+|.+
T Consensus 302 P~g~~H~i~N~G~e~l~fL~if~s~~~~~i-~l~~~l~~~p~~vl~ 346 (367)
T TIGR03404 302 PRNMGHYVENTGDETLVFLEVFKADRFADV-SLNQWLALTPPQLVA 346 (367)
T ss_pred CCCCeEEEEECCCCCEEEEEEECCCCCcee-EHHHHHhhCCHHHHH
Confidence 988777787766678999998666644443 223333444444433
No 7
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=97.30 E-value=0.0047 Score=52.00 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=62.6
Q ss_pred CCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc---CcCceeecCccEEEEc
Q 020448 182 TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG---TVNSSAVSAHNVLVLS 258 (326)
Q Consensus 182 ~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~---g~~~~~l~~~d~~~l~ 258 (326)
.++..-|+++... .....+..+.|++|++........ .-++||++|++++. +.+...|.+||.+.+.
T Consensus 19 ~~~~~krll~~~~---------~~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~~ 88 (125)
T PRK13290 19 GNWTSRRLLLKDD---------GMGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATGEVHPIRPGTMYALD 88 (125)
T ss_pred CCceEEEEEEecC---------CCCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCCEEEEeCCCeEEEEC
Confidence 3445666665421 123466778999998665433322 46999999999874 2344789999999999
Q ss_pred CCCeEEEEecCCCCeEEEEEeecc
Q 020448 259 LGDGLSAWNRSSKQLRFVLIAGQP 282 (326)
Q Consensus 259 ~g~~l~i~a~~~~~a~~LL~~G~p 282 (326)
.+..=.+.+. +++++|.+...|
T Consensus 89 ~~~~H~~~N~--e~~~~l~v~tP~ 110 (125)
T PRK13290 89 KHDRHYLRAG--EDMRLVCVFNPP 110 (125)
T ss_pred CCCcEEEEcC--CCEEEEEEECCC
Confidence 8877777774 689999887755
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=97.18 E-value=0.00055 Score=50.41 Aligned_cols=67 Identities=24% Similarity=0.462 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEE
Q 020448 86 VSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLW 155 (326)
Q Consensus 86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLW 155 (326)
+.|+...++|.|.+.+.+.||++|++.-. --|..-.+++||+-++.+| ..|.=.|.+++++.+|-+|
T Consensus 5 ~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~~~~~l~~Gd~~~i~~~--~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 5 LPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDGERVELKPGDAIYIPPG--VPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EETTEEEEEEEESSEEEEEEEEESEEEEE-ETTEEEEEETTEEEEEETT--SEEEEEEESSSEEEEEEEE
T ss_pred ECCCCCCCCEECCCCCEEEEEEECCEEEE-EccEEeEccCCEEEEECCC--CeEEEEECCCCCEEEEEEC
Confidence 45666678999999989999999999988 4466789999999999998 7888888888888887665
No 9
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=97.04 E-value=0.0048 Score=45.27 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=49.9
Q ss_pred EEECCCCeEEEecCCCCeEEEEEeecceEEc--CcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448 212 FTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI 278 (326)
Q Consensus 212 i~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~ 278 (326)
+.+.+|+.......+....++||++|++++. | +...+++||.+.+..+..-.+.+.+++++++|.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~-~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDG-ERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEETT-EEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEcc-EEeEccCCEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 5778888665544444448999999998884 3 2368999999999988887887766667777765
No 10
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=96.86 E-value=0.0086 Score=56.44 Aligned_cols=87 Identities=21% Similarity=0.208 Sum_probs=67.2
Q ss_pred CceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeE
Q 020448 59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIV 138 (326)
Q Consensus 59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~ 138 (326)
++..++.+++ . ...+=.++.-+.+.|++-.|.|.|..+|=.-|||+|+-..+|. |..-.+++||+-||.|| +.
T Consensus 163 ~~~~~~~llp--~--~~~~~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~-g~~~~V~~GD~i~i~~~--~~ 235 (260)
T TIGR03214 163 DDVILTTLLP--K--ELAFDMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLD-NNWVPVEAGDYIWMGAY--CP 235 (260)
T ss_pred CcEEEEEeCc--h--hcCCCcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEEC-CEEEEecCCCEEEECCC--CC
Confidence 3677777872 2 2232455666888999888988888888888999999999886 77789999999999887 77
Q ss_pred EEeeeCCCCceeEE
Q 020448 139 HSEMPAGEGVQNGL 152 (326)
Q Consensus 139 HsE~~~~~~~~~~l 152 (326)
|.=.|..++++++|
T Consensus 236 h~~~~~G~~~~~~l 249 (260)
T TIGR03214 236 QACYAGGRGEFRYL 249 (260)
T ss_pred EEEEecCCCcEEEE
Confidence 87777766666654
No 11
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=96.81 E-value=0.049 Score=46.44 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=67.9
Q ss_pred cCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--CcC-----ceeecCcc
Q 020448 181 ETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVN-----SSAVSAHN 253 (326)
Q Consensus 181 ~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~-----~~~l~~~d 253 (326)
..+++.++++.+. .-|.-....+.+..+++++|+........+..-++||++|++.+. +.+ ...+.+||
T Consensus 8 ~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD 83 (146)
T smart00835 8 SNEGGRLREADPT----NFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGD 83 (146)
T ss_pred cCCCceEEEeCch----hCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCC
Confidence 4455677877542 223322335788888999999754333223357899999998773 321 25699999
Q ss_pred EEEEcCCCeEEEEecCCCCeEEEEEeeccCCCc
Q 020448 254 VLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEP 286 (326)
Q Consensus 254 ~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~ep 286 (326)
.+.+..+..-.+.+.++++++++.+.......|
T Consensus 84 ~~~ip~g~~H~~~n~~~~~~~~l~~~~~~~~~~ 116 (146)
T smart00835 84 VFVVPQGHPHFQVNSGDENLEFVAFNTNDPNRR 116 (146)
T ss_pred EEEECCCCEEEEEcCCCCCEEEEEEecCCCCce
Confidence 999998776666666567898887766543444
No 12
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=96.55 E-value=0.18 Score=46.34 Aligned_cols=152 Identities=22% Similarity=0.302 Sum_probs=93.3
Q ss_pred CCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCC--CCCCCCCccc
Q 020448 94 DHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSS--DKMIEPRYQE 171 (326)
Q Consensus 94 ~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~--~k~~~P~Y~~ 171 (326)
+-+-.+.|++-||++|++.-. -.|..-.|++|+--+..+|+|-. =.|.+..+.++. ||.-+-. +.-.+|.-..
T Consensus 77 ~e~d~~ae~~lfVv~Ge~tv~-~~G~th~l~eggyaylPpgs~~~--~~N~~~~~~rfh--w~rk~Y~~VdG~~~P~~~~ 151 (264)
T COG3257 77 PEGDEGAETFLFVVSGEITVK-AEGKTHALREGGYAYLPPGSGWT--LRNAQKEDSRFH--WIRKRYQPVEGVQAPELVS 151 (264)
T ss_pred CCCCCcceEEEEEEeeeEEEE-EcCeEEEeccCCeEEeCCCCcce--EeeccCCceEEE--EEeecceeecCccCCccee
Confidence 345559999999999998654 23666789999999999999854 445544444332 5532111 0111222221
Q ss_pred cCCCcccee---cCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-CcCce
Q 020448 172 IPSEEIKRA---ETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-TVNSS 247 (326)
Q Consensus 172 ~~~~~iP~~---~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-g~~~~ 247 (326)
--.++||.. ..++...+-+ .|-+..-++.+--+++++|+++-+.--.=...-+|||+|....+ +++..
T Consensus 152 ~Ne~ei~~~~m~gtdg~~attv--------~P~d~r~Dmhv~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrLn~dwv 223 (264)
T COG3257 152 GNESEIEPSPMEGTDGVIATTV--------LPKELRFDMHVHIVSFEPGASIPYAETHVMEHGLYVLEGKGVYRLNNNWV 223 (264)
T ss_pred cChhhCCCCCCCCCCCeEEEee--------CccccCcceEEEEEEecCCcccchhhhhhhhcceEEEecceEEeecCceE
Confidence 112223322 2344444433 34456677888888999999764432222347799999998764 33457
Q ss_pred eecCccEEEEc
Q 020448 248 AVSAHNVLVLS 258 (326)
Q Consensus 248 ~l~~~d~~~l~ 258 (326)
.+++||.+.+.
T Consensus 224 ~V~aGD~mwm~ 234 (264)
T COG3257 224 PVEAGDYIWMG 234 (264)
T ss_pred EeecccEEEee
Confidence 89999998875
No 13
>PRK11171 hypothetical protein; Provisional
Probab=96.21 E-value=0.037 Score=52.33 Aligned_cols=91 Identities=21% Similarity=0.230 Sum_probs=66.5
Q ss_pred CCCCceEEE-EecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecC
Q 020448 56 HDGDGAVVR-RAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAG 134 (326)
Q Consensus 56 ~~G~g~~v~-r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAG 134 (326)
..|.|..++ |+++.. ...++ ..+..+.+.|++-++.|.|.+.|=.-|||+|+++..+. |..-.|++||+-||.+.
T Consensus 163 ~g~~g~~~~~~~~~p~-~~~~~--~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~-~~~~~l~~GD~i~~~~~ 238 (266)
T PRK11171 163 PGTDGVWATTRLVDPE-DLRFD--MHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLN-NDWVEVEAGDFIWMRAY 238 (266)
T ss_pred CCCCCeEEEEEeeCch-hcCCC--cEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEEC-CEEEEeCCCCEEEECCC
Confidence 345566555 455533 23344 46667778899889998888999999999999998874 66678999999999876
Q ss_pred CCeEEEeeeCCCCceeEE
Q 020448 135 RGIVHSEMPAGEGVQNGL 152 (326)
Q Consensus 135 sGI~HsE~~~~~~~~~~l 152 (326)
..|.=.|..+++++++
T Consensus 239 --~~h~~~N~g~~~~~yl 254 (266)
T PRK11171 239 --CPQACYAGGPGPFRYL 254 (266)
T ss_pred --CCEEEECCCCCcEEEE
Confidence 5666666666666553
No 14
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=96.15 E-value=0.059 Score=47.77 Aligned_cols=74 Identities=18% Similarity=0.104 Sum_probs=50.4
Q ss_pred cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeec
Q 020448 207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281 (326)
Q Consensus 207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~ 281 (326)
+.++...+++|+...-.......-++||++|++.+ ++ +...|.+||.+.+..+..=.+.+.+++++++|++...
T Consensus 107 ~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~-~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p 182 (185)
T PRK09943 107 LAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTING-QDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTP 182 (185)
T ss_pred eEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEECC-EEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCC
Confidence 34455677888753212222335899999999877 44 2378999999999866544455555678999988653
No 15
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=95.96 E-value=0.057 Score=45.44 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=60.8
Q ss_pred ceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecC-CCCeeeeeCCcEEEEecCCCeE
Q 020448 60 GAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDF-SGHKGTIHTGDVQWMTAGRGIV 138 (326)
Q Consensus 60 g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS-~Gn~~~i~~GdvQwMtAGsGI~ 138 (326)
+-..+|++.......+ .+-.+.+.|+...+.|-|...| +.|||+|+++-.+- -|....|+|||+-.+.++ ..
T Consensus 20 ~~~~krll~~~~~~~~----~~~~~~l~pG~~~~~h~h~~~E-~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~~~~--~~ 92 (125)
T PRK13290 20 NWTSRRLLLKDDGMGF----SFHETTIYAGTETHLHYKNHLE-AVYCIEGEGEVEDLATGEVHPIRPGTMYALDKH--DR 92 (125)
T ss_pred CceEEEEEEecCCCCE----EEEEEEECCCCcccceeCCCEE-EEEEEeCEEEEEEcCCCEEEEeCCCeEEEECCC--Cc
Confidence 3445665543322222 2233456777777888776655 99999999999843 377889999999999987 66
Q ss_pred EEeeeCCCCceeEEEEEeccC
Q 020448 139 HSEMPAGEGVQNGLQLWINLS 159 (326)
Q Consensus 139 HsE~~~~~~~~~~lQLWinLP 159 (326)
|+=.|. +++++ ||+-.|
T Consensus 93 H~~~N~--e~~~~--l~v~tP 109 (125)
T PRK13290 93 HYLRAG--EDMRL--VCVFNP 109 (125)
T ss_pred EEEEcC--CCEEE--EEEECC
Confidence 777775 55665 787444
No 16
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=95.90 E-value=0.0096 Score=54.59 Aligned_cols=62 Identities=26% Similarity=0.461 Sum_probs=44.9
Q ss_pred cCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEE
Q 020448 85 SVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQL 154 (326)
Q Consensus 85 ~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQL 154 (326)
++.|+..+|.|.|.|.| +|+||+|.+. |.. +.+.+||+-+..+| ..|+=....++.+-.|=+
T Consensus 133 ~i~pG~~~p~H~H~G~E-~tlVLeG~f~--de~---g~y~~Gd~i~~p~~--~~H~p~a~~~~~Cicl~v 194 (215)
T TIGR02451 133 YIEAGQSIPQHTHKGFE-LTLVLHGAFS--DET---GVYGVGDFEEADGS--VQHQPRTVSGGDCLCLAV 194 (215)
T ss_pred EECCCCccCCCcCCCcE-EEEEEEEEEE--cCC---CccCCCeEEECCCC--CCcCcccCCCCCeEEEEE
Confidence 46788899999999999 9999999985 333 46899987776666 456655444444544433
No 17
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=95.50 E-value=0.029 Score=46.82 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=58.5
Q ss_pred CCceEEeecc-cCCCCCCCCCCCCCCceEEEEEeeceEE--EecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeE
Q 020448 75 LDPFLMLDEF-SVSPPAGFPDHPHRGFETVTYMLQGGIT--HQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNG 151 (326)
Q Consensus 75 ~dPfl~lD~~-~~~~~~GF~~HPHrG~EtvTyvl~G~l~--H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~ 151 (326)
.|.-.++-+. ++.|++--..|-|.+.||+-|+|+|+.. .-+-+-...+.+|||.-+.-+| +-|.+.|.+++++..
T Consensus 41 vGas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpg--VPHqp~N~S~ep~s~ 118 (142)
T COG4101 41 VGASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPG--VPHQPANLSTEPLSA 118 (142)
T ss_pred cccceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCC--CCCcccccCCCCeEE
Confidence 3444444443 4677777889999999999999999854 4466666789999999999986 889999887776655
Q ss_pred E
Q 020448 152 L 152 (326)
Q Consensus 152 l 152 (326)
+
T Consensus 119 v 119 (142)
T COG4101 119 V 119 (142)
T ss_pred E
Confidence 4
No 18
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=95.45 E-value=0.075 Score=44.26 Aligned_cols=74 Identities=27% Similarity=0.276 Sum_probs=59.8
Q ss_pred EeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448 80 MLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI 156 (326)
Q Consensus 80 ~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi 156 (326)
..-.+.+.+++..+.|-|...+...|||+|++...=. |....+++||+-++-+| +.|.=.+..+..+..|-+.-
T Consensus 44 ~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~~~l~~Gd~i~ip~g--~~H~~~a~~~~~~~~l~v~~ 117 (131)
T COG1917 44 SVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEKKELKAGDVIIIPPG--VVHGLKAVEDEPMVLLLVFP 117 (131)
T ss_pred EEEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CCceEecCCCEEEECCC--CeeeeccCCCCceeEEEEee
Confidence 3344567888889999999777888999999999888 99999999999998876 88887776655466777764
No 19
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=95.39 E-value=0.013 Score=46.03 Aligned_cols=73 Identities=25% Similarity=0.384 Sum_probs=51.6
Q ss_pred CceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeE
Q 020448 59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIV 138 (326)
Q Consensus 59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~ 138 (326)
.|+.++.+.... ...+..+.|= ++.|++.+|.|.|.|.|-+ |||+|++.+.| +...+|+.-+..+|+ .
T Consensus 8 ~Gv~~~~L~~~~--~~~g~~~~L~--r~~pG~~~p~H~H~g~ee~-~VLeG~~~d~~-----~~~~~G~~~~~p~g~--~ 75 (91)
T PF12973_consen 8 PGVSVKPLHRDE--GETGERVSLL--RLEPGASLPRHRHPGGEEI-LVLEGELSDGD-----GRYGAGDWLRLPPGS--S 75 (91)
T ss_dssp TTEEEEEEEECS--SSTTEEEEEE--EE-TTEEEEEEEESS-EEE-EEEECEEEETT-----CEEETTEEEEE-TTE--E
T ss_pred CCEEEEEeccCC--CcccCEEEEE--EECCCCCcCccCCCCcEEE-EEEEEEEEECC-----ccCCCCeEEEeCCCC--c
Confidence 477777776433 1234454443 3567788999999998887 99999999755 478999999999886 6
Q ss_pred EEeee
Q 020448 139 HSEMP 143 (326)
Q Consensus 139 HsE~~ 143 (326)
|+-.-
T Consensus 76 h~~~s 80 (91)
T PF12973_consen 76 HTPRS 80 (91)
T ss_dssp EEEEE
T ss_pred cccCc
Confidence 77663
No 20
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=95.31 E-value=0.086 Score=48.42 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=49.2
Q ss_pred EEEECCCCeEEEe-cCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448 211 DFTLKPRAQIHQS-IPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA 279 (326)
Q Consensus 211 di~L~~g~~~~~~-~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~ 279 (326)
-+++.++.--.-+ ..++.++++||++|++.+ +|+ .+.|.+|+-+.+..|+.-++++.+.+++||-++-
T Consensus 65 ive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~-th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~r 135 (264)
T COG3257 65 IVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK-THALREGGYAYLPPGSGWTLRNAQKEDSRFHWIR 135 (264)
T ss_pred eEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe-EEEeccCCeEEeCCCCcceEeeccCCceEEEEEe
Confidence 3566444322222 234567999999999877 452 3789999999999999989886556789988864
No 21
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=95.30 E-value=0.21 Score=39.09 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=48.0
Q ss_pred EEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448 208 MFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA 279 (326)
Q Consensus 208 ~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~ 279 (326)
...-+++++|+.+-.... .....+|||+|++..++ ..+.+||.+....+..-++.+ ++++.+++=.
T Consensus 25 ~~~L~r~~pG~~~p~H~H-~g~ee~~VLeG~~~d~~---~~~~~G~~~~~p~g~~h~~~s--~~gc~~~vkt 90 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRH-PGGEEILVLEGELSDGD---GRYGAGDWLRLPPGSSHTPRS--DEGCLILVKT 90 (91)
T ss_dssp EEEEEEE-TTEEEEEEEE-SS-EEEEEEECEEEETT---CEEETTEEEEE-TTEEEEEEE--SSCEEEEEEE
T ss_pred EEEEEEECCCCCcCccCC-CCcEEEEEEEEEEEECC---ccCCCCeEEEeCCCCccccCc--CCCEEEEEEe
Confidence 455578899987754322 22478899999999887 788999999999888888776 3678777643
No 22
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=94.76 E-value=0.19 Score=49.83 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=61.9
Q ss_pred EEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEe--cCCCC--eeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEE
Q 020448 79 LMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQ--DFSGH--KGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQL 154 (326)
Q Consensus 79 l~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~--DS~Gn--~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQL 154 (326)
+-+-+..+.|++..++|-|.+-+=+-||++|+.+-. |+-|+ ...+++||+-..-. |..|.=.|..++++++|-+
T Consensus 245 ~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~--g~~H~i~N~G~e~l~fL~i 322 (367)
T TIGR03404 245 IAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPR--NMGHYVENTGDETLVFLEV 322 (367)
T ss_pred EEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECC--CCeEEEEECCCCCEEEEEE
Confidence 445666788888999999999999999999987655 66665 35799999988887 5889999988788999887
Q ss_pred E
Q 020448 155 W 155 (326)
Q Consensus 155 W 155 (326)
|
T Consensus 323 f 323 (367)
T TIGR03404 323 F 323 (367)
T ss_pred E
Confidence 7
No 23
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=94.20 E-value=1.7 Score=36.82 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=57.4
Q ss_pred ceecCCCeEEEEEeCCCCCCcCc-ccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc----Cc-------C
Q 020448 178 KRAETDGVEVRIIAGESMGVRSP-VYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG----TV-------N 245 (326)
Q Consensus 178 P~~~~~g~~~rViaG~~~g~~sp-~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~----g~-------~ 245 (326)
|.+..+++.++.+.+. +-| +.......+..+.+++|+-..--.. .-..++||++|++++. +. .
T Consensus 8 ~~~~~~~G~~~~~~~~----~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~ 82 (144)
T PF00190_consen 8 PRVSNEGGRIREADSE----DFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDF 82 (144)
T ss_dssp EEEEETTEEEEEESTT----TSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEE
T ss_pred CcccCCCEEEEEEChh----hCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceee
Confidence 4455567788888654 234 2233445555566799886654334 5568999999999852 21 1
Q ss_pred cee--ecCccEEEEcCCCeEEEEecC
Q 020448 246 SSA--VSAHNVLVLSLGDGLSAWNRS 269 (326)
Q Consensus 246 ~~~--l~~~d~~~l~~g~~l~i~a~~ 269 (326)
.+. +++||+..+..|....+.+.+
T Consensus 83 ~~~v~l~~Gdv~~vP~G~~h~~~n~~ 108 (144)
T PF00190_consen 83 SQKVRLKAGDVFVVPAGHPHWIINDG 108 (144)
T ss_dssp EEEEEEETTEEEEE-TT-EEEEEECS
T ss_pred eceeeeecccceeeccceeEEEEcCC
Confidence 134 999999999999888888864
No 24
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=94.19 E-value=0.32 Score=41.38 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=55.1
Q ss_pred EEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEe--cCCCC---eeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEE
Q 020448 79 LMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQ--DFSGH---KGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQ 153 (326)
Q Consensus 79 l~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~--DS~Gn---~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQ 153 (326)
+.+-...+.|+..++.|-|.+-+-+-||++|++.-. |..|+ ...+++||+-.+.+| +.|...+..++++.++
T Consensus 30 ~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g--~~H~~~n~~~~~~~~l- 106 (146)
T smart00835 30 ISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQG--HPHFQVNSGDENLEFV- 106 (146)
T ss_pred eEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCC--CEEEEEcCCCCCEEEE-
Confidence 334444567777788999986777889999996543 32222 567999999999888 7899998777788776
Q ss_pred EEe
Q 020448 154 LWI 156 (326)
Q Consensus 154 LWi 156 (326)
|+
T Consensus 107 -~~ 108 (146)
T smart00835 107 -AF 108 (146)
T ss_pred -EE
Confidence 55
No 25
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=93.51 E-value=0.19 Score=48.04 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=48.3
Q ss_pred CCCCCCceEEeeccc------CCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEee
Q 020448 71 DLRSLDPFLMLDEFS------VSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEM 142 (326)
Q Consensus 71 ~~~~~dPfl~lD~~~------~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~ 142 (326)
....+||+...-.-. -.+...+++|-|..+|++ |+++|.+...-. |..-.+.|||+-|+.+| +.|+-.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~HwH~e~Ei~-yv~~G~~~~~i~-g~~~~l~~Gd~ili~s~--~~H~~~ 85 (302)
T PRK10371 12 EKQTRSPLSLYSEYQRLEIEFRPPHIMPTSHWHGQVEVN-VPFDGDVEYLIN-NEKVQINQGHITLFWAC--TPHQLT 85 (302)
T ss_pred CCCCCCCcccccCCceeEEEeeCCCCCCCCCccccEEEE-EecCCcEEEEEC-CEEEEEcCCcEEEEecC--Cccccc
Confidence 344556665543321 123346789999999998 999999876554 77889999999999655 777643
No 26
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=93.43 E-value=0.58 Score=38.87 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=46.5
Q ss_pred ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-CcCceeecCccEEEEcCCCeEEEEec
Q 020448 206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-TVNSSAVSAHNVLVLSLGDGLSAWNR 268 (326)
Q Consensus 206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-g~~~~~l~~~d~~~l~~g~~l~i~a~ 268 (326)
.+.+..+.+++|++...-..+.+..++||++|.+++. +.+...+.+||.+.+..+..=.+.|.
T Consensus 42 ~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~ 105 (131)
T COG1917 42 NLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGEKKELKAGDVIIIPPGVVHGLKAV 105 (131)
T ss_pred eEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCCceEecCCCEEEECCCCeeeeccC
Confidence 4566678999999876555445679999999998874 12337899999999987655445554
No 27
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=93.34 E-value=0.49 Score=48.29 Aligned_cols=77 Identities=12% Similarity=0.146 Sum_probs=55.7
Q ss_pred CccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448 205 TPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP 282 (326)
Q Consensus 205 ~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p 282 (326)
....+..+.+++|++..........-..||++|++++ +| +...+.+||.+.+..+..=.+.+.+++++++|.+...+
T Consensus 374 ~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg-~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~~ 452 (468)
T TIGR01479 374 DRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGD-ETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSGS 452 (468)
T ss_pred CCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECC-EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence 3566777899999965433333333445999999877 45 23789999999999887777877667789988776543
No 28
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=93.27 E-value=0.88 Score=37.98 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=55.3
Q ss_pred ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448 206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP 282 (326)
Q Consensus 206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p 282 (326)
...+..+.+++|+.+.+.....+.-+.||++|++.+ ++ +...|.+||.+.+..|..=.+.+.+..+..++-+...+
T Consensus 35 ~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~-~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~ 112 (127)
T COG0662 35 RYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG-EEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPP 112 (127)
T ss_pred cEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC-EEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCC
Confidence 345667788999987766666667899999998877 44 23679999999999888777777544445555554433
No 29
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=92.82 E-value=0.28 Score=37.18 Aligned_cols=48 Identities=29% Similarity=0.419 Sum_probs=37.4
Q ss_pred CCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecC-CCeEEEe
Q 020448 92 FPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAG-RGIVHSE 141 (326)
Q Consensus 92 F~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAG-sGI~HsE 141 (326)
|+.+... .|++ |||+|++.-.|..|....++|||+-.+.+| +|..+..
T Consensus 19 ~~~~~~~-~E~~-~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~v~ 67 (74)
T PF05899_consen 19 FPWPYPE-DEFF-YVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWEVR 67 (74)
T ss_dssp EEEEESS-EEEE-EEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEEEE
T ss_pred eEeeCCC-CEEE-EEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEEEC
Confidence 4443333 7777 999999999999999999999999999999 4554443
No 30
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=92.61 E-value=1.1 Score=35.17 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=42.7
Q ss_pred EEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448 212 FTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI 278 (326)
Q Consensus 212 i~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~ 278 (326)
+.|.++++-...--.......||++|.++| ++ ....+.+|+...+..|..-.|++.++++|++++.
T Consensus 17 l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~-~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~ 84 (85)
T PF11699_consen 17 LELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHE-TSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV 84 (85)
T ss_dssp EEE-TCCCEEEEE--SEEEEEEEEESEEEEEETT-EEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred EEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcC-cEEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence 467777776544333334778999998877 44 2267899999999999999999877777877653
No 31
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=92.48 E-value=0.58 Score=40.90 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=57.6
Q ss_pred cccCCCCC-CCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEE
Q 020448 83 EFSVSPPA-GFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLW 155 (326)
Q Consensus 83 ~~~~~~~~-GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLW 155 (326)
...+.|+. .-..|-|.--|=+.|||+|+..-+-. |....|+|||+-=..||.|..|.=.|.++..++.|-+=
T Consensus 46 ~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d-~~e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG 118 (161)
T COG3837 46 LEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRED-GGETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVG 118 (161)
T ss_pred eEEeCCCCccccccccccCceEEEEEcCceEEEEC-CeeEEecCCceeeccCCCcceeEEeecCCceEEEEEec
Confidence 33456652 45689999999999999999887654 34578999999999999999999999877777766543
No 32
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=92.45 E-value=0.67 Score=47.55 Aligned_cols=77 Identities=10% Similarity=0.139 Sum_probs=57.3
Q ss_pred ccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEee
Q 020448 203 TRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAG 280 (326)
Q Consensus 203 ~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G 280 (326)
......+..+.+++|++..........=+.||++|++++ +| +...|.+||.+.+..+..=.+.+.+++++++|.+..
T Consensus 381 ~g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg-~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~ 459 (478)
T PRK15460 381 AGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG-DIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRS 459 (478)
T ss_pred CCCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC-EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEc
Confidence 344567788899999976554444455788899998876 45 237899999999998877677776667888776643
No 33
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=92.13 E-value=1.5 Score=38.71 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=44.4
Q ss_pred CCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccC
Q 020448 93 PDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLS 159 (326)
Q Consensus 93 ~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP 159 (326)
+.|.|.+.|++ ||++|+++-.= -|..-.|++||.-++.++ +.|.=.|..+.+++.+ |+.-|
T Consensus 122 ~~~~h~~~E~~-~Vl~G~~~~~~-~~~~~~l~~Gd~~~~~~~--~~H~~~n~~~~~~~~l--~~~~p 182 (185)
T PRK09943 122 ERIKHQGEEIG-TVLEGEIVLTI-NGQDYHLVAGQSYAINTG--IPHSFSNTSAGICRII--SAHTP 182 (185)
T ss_pred cccccCCcEEE-EEEEeEEEEEE-CCEEEEecCCCEEEEcCC--CCeeeeCCCCCCeEEE--EEeCC
Confidence 35667776555 89999998652 345678999999999996 7898777666666554 45444
No 34
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=92.05 E-value=0.88 Score=46.42 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=51.7
Q ss_pred cccCCCCCCCC--CCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCC
Q 020448 83 EFSVSPPAGFP--DHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSS 160 (326)
Q Consensus 83 ~~~~~~~~GF~--~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~ 160 (326)
...+.|+..-+ .|+|++ |+. ||++|+++-.-. |....|++||.-...+|. .|+=.|.++++++. ||+..|.
T Consensus 380 ~~~i~PG~~~~~h~H~~~~-E~~-~Vl~G~~~v~~d-g~~~~l~~GDsi~ip~~~--~H~~~N~g~~~~~~--i~v~~~~ 452 (468)
T TIGR01479 380 RITVKPGEKLSLQMHHHRA-EHW-IVVSGTARVTIG-DETLLLTENESTYIPLGV--IHRLENPGKIPLEL--IEVQSGS 452 (468)
T ss_pred EEEECCCCccCccccCCCc-eEE-EEEeeEEEEEEC-CEEEEecCCCEEEECCCC--cEEEEcCCCCCEEE--EEEEcCC
Confidence 34567776555 466654 766 999999877522 556789999999998875 89988887777777 5664443
No 35
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=92.02 E-value=0.43 Score=38.23 Aligned_cols=65 Identities=29% Similarity=0.454 Sum_probs=41.5
Q ss_pred CCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccC
Q 020448 89 PAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLS 159 (326)
Q Consensus 89 ~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP 159 (326)
...+++|-|..+|++ |+++|+..+.- -|..-.++|||+-|+.+|. .|+=...+++ ..-..||.++
T Consensus 13 ~~~~~~h~h~~~~i~-~v~~G~~~~~~-~~~~~~l~~g~~~li~p~~--~H~~~~~~~~--~~~~~~i~~~ 77 (136)
T PF02311_consen 13 NFEFPPHWHDFYEII-YVLSGEGTLHI-DGQEYPLKPGDLFLIPPGQ--PHSYYPDSNE--PWEYYWIYFS 77 (136)
T ss_dssp T-SEEEETT-SEEEE-EEEEE-EEEEE-TTEEEEE-TT-EEEE-TTS---EEEEE-TTS--EEEEEEEEE-
T ss_pred CCccCCEECCCEEEE-EEeCCEEEEEE-CCEEEEEECCEEEEecCCc--cEEEecCCCC--CEEEEEEEEC
Confidence 345678999999886 99999999843 3455789999999999885 8887766555 4455566544
No 36
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=91.96 E-value=0.66 Score=40.58 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=46.4
Q ss_pred EEEECCCCeEEEecCCC-CeEEEEEeecceEE--cCcCceeecCccEEEEcCCC--eEEEEecCCCCeEEEEEee
Q 020448 211 DFTLKPRAQIHQSIPET-WNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGD--GLSAWNRSSKQLRFVLIAG 280 (326)
Q Consensus 211 di~L~~g~~~~~~~p~~-~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~--~l~i~a~~~~~a~~LL~~G 280 (326)
...|+||.+-.+.--.. ..-|+|||+|++++ ++. ...|.+||.+.|..|. .=.|.+.++..+++|.++-
T Consensus 46 ~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~-e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG~ 119 (161)
T COG3837 46 LEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG-ETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVGT 119 (161)
T ss_pred eEEeCCCCccccccccccCceEEEEEcCceEEEECCe-eEEecCCceeeccCCCcceeEEeecCCceEEEEEecc
Confidence 34778998766443322 24799999998776 442 2789999999999653 3456666555555555554
No 37
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=91.43 E-value=1.4 Score=38.25 Aligned_cols=69 Identities=9% Similarity=0.114 Sum_probs=54.0
Q ss_pred cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEE
Q 020448 207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFV 276 (326)
Q Consensus 207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~L 276 (326)
..+-.+.+.||.++++.....+.-.-+|++|.+.| ++ +...+.+||.+.+..|..=++++.+..+.+|+
T Consensus 63 ~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~-~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~I 133 (151)
T PF01050_consen 63 YKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDD-EEFTLKEGDSVYIPRGAKHRIENPGKTPLEII 133 (151)
T ss_pred EEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECC-EEEEEcCCCEEEECCCCEEEEECCCCcCcEEE
Confidence 45567789999999999888888899999998777 44 23689999999999888888887543444444
No 38
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=90.66 E-value=0.66 Score=43.89 Aligned_cols=68 Identities=10% Similarity=0.191 Sum_probs=49.3
Q ss_pred EEECCCCeEEEecCCCCeEEEEEeecceEEc--CcCceeecCc--------cEEEEcCCCeEEEEecCCCCeEEEEEeec
Q 020448 212 FTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVNSSAVSAH--------NVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281 (326)
Q Consensus 212 i~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~~~~l~~~--------d~~~l~~g~~l~i~a~~~~~a~~LL~~G~ 281 (326)
++|++|+++++.+ .++...+..++|.++|. |.+...+..+ |.+.+..|..++|+|. ++++|.+.+..
T Consensus 32 l~L~~g~~~~~~~-~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~--~~ae~~~~sap 108 (261)
T PF04962_consen 32 LRLEAGESLEFEL-ERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFAS--TDAEFAVCSAP 108 (261)
T ss_dssp EEEECCHCCCCCC-CSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEES--STEEEEEEEEE
T ss_pred EEecCCCEEeccC-CCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEEc--CCCEEEEEccc
Confidence 5889999888774 35778888999998884 3223567777 9999999999999994 57999988765
Q ss_pred c
Q 020448 282 P 282 (326)
Q Consensus 282 p 282 (326)
-
T Consensus 109 a 109 (261)
T PF04962_consen 109 A 109 (261)
T ss_dssp -
T ss_pred c
Confidence 4
No 39
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=90.43 E-value=1.6 Score=38.09 Aligned_cols=63 Identities=14% Similarity=0.290 Sum_probs=43.5
Q ss_pred EEEECCCCeEEEecCCCCeEEEEEeecceEEc--CcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448 211 DFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA 279 (326)
Q Consensus 211 di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~ 279 (326)
..++++ +++.+.+ .+.=+-||++|++.|. | +....++||.+.|..|..|++.+. +.++++.+.
T Consensus 81 f~~le~-~~f~wtl--~YDEi~~VlEG~L~i~~~G-~~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv~ 145 (152)
T PF06249_consen 81 FMELEK-TSFPWTL--TYDEIKYVLEGTLEISIDG-QTVTAKPGDVIFIPKGSTITFSTP--DYARFFYVT 145 (152)
T ss_dssp EEEEEE-EEEEEE---SSEEEEEEEEEEEEEEETT-EEEEEETT-EEEE-TT-EEEEEEE--EEEEEEEEE
T ss_pred EEEEeC-CCccEEe--ecceEEEEEEeEEEEEECC-EEEEEcCCcEEEECCCCEEEEecC--CCEEEEEEE
Confidence 345554 4666666 4678899999998884 3 125678999999999999999874 468877765
No 40
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=89.87 E-value=0.9 Score=39.59 Aligned_cols=48 Identities=15% Similarity=0.292 Sum_probs=38.1
Q ss_pred eEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448 229 NAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA 279 (326)
Q Consensus 229 ~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~ 279 (326)
.-.-|||+|.+.| +|+. ...++||.+.+..|..|+|... ..|+||++.
T Consensus 119 De~d~VlEGrL~V~~~g~t-v~a~aGDvifiPKgssIefst~--gea~flyvt 168 (176)
T COG4766 119 DEIDYVLEGRLHVRIDGRT-VIAGAGDVIFIPKGSSIEFSTT--GEAKFLYVT 168 (176)
T ss_pred cceeEEEeeeEEEEEcCCe-EecCCCcEEEecCCCeEEEecc--ceEEEEEEE
Confidence 3467999999877 3422 5678999999999999999875 359999886
No 41
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.68 E-value=4.6 Score=33.60 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=54.9
Q ss_pred eecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448 81 LDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI 156 (326)
Q Consensus 81 lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi 156 (326)
+.+..+.|+..+++|.|...+=+=||++|+..=..- |....|++||+-+.-|| ..|.=.|....++.++=++.
T Consensus 38 ~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~-~~~~~v~~gd~~~iP~g--~~H~~~N~G~~~L~liei~~ 110 (127)
T COG0662 38 IARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG-GEEVEVKAGDSVYIPAG--TPHRVRNTGKIPLVLIEVQS 110 (127)
T ss_pred EEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC-CEEEEecCCCEEEECCC--CcEEEEcCCCcceEEEEEec
Confidence 344455666666666666677788999998543333 77889999999988876 78999998778888888875
No 42
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=88.92 E-value=0.6 Score=41.77 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=34.8
Q ss_pred CCCCeEEEEEeecceEEcCc-CceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448 225 PETWNAFVYTIEGEGVFGTV-NSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA 279 (326)
Q Consensus 225 p~~~~~~lyVl~G~~~i~g~-~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~ 279 (326)
++....++|+++|++.+... +...|.++|.+.+++.+.+.++. ++++|++.
T Consensus 132 ~~~~~~l~~~~~G~~~i~~~~~~~~L~~~d~l~~~~~~~~~l~~----~g~ll~v~ 183 (184)
T PF05962_consen 132 PAASTVLVYVLEGAWSITEGGNCISLSAGDLLLIDDEEDLPLTG----DGQLLWVS 183 (184)
T ss_dssp E--SEEEEEESSS-EEECCCEEEEEE-TT-EEEEESEECEEEEE----ECCEEEEE
T ss_pred CCCCEEEEEEeeCcEEEecCCCceEcCCCCEEEEeCCCceEecC----CeeEEEEe
Confidence 56777899999999999432 23789999999999877777765 45677653
No 43
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=88.71 E-value=9.1 Score=37.59 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=40.4
Q ss_pred CCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCc
Q 020448 86 VSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGV 148 (326)
Q Consensus 86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~ 148 (326)
+.|+.--++|-|... .|-+|++|+-..-==-|.+-.+++||+-..-. +-.|+=.|.++.+
T Consensus 88 l~pGe~~~~HRht~s-Al~~vveG~G~~t~V~g~~~~~~~gD~~~tP~--w~wH~H~n~~d~~ 147 (335)
T TIGR02272 88 ILPGEVAPSHRHTQS-ALRFIVEGKGAFTAVDGERTTMHPGDFIITPS--WTWHDHGNPGDEP 147 (335)
T ss_pred eCCCCCCCccccccc-eEEEEEEcCceEEEECCEEEeeeCCCEEEeCC--CeeEecccCCCCc
Confidence 355555567777754 88899998743211235567899999977744 5888877765555
No 44
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.67 E-value=3.4 Score=34.74 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=54.4
Q ss_pred CccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCc--eeecCccEEEEcCCCe-EEEEecCCCCeEEEEEe
Q 020448 205 TPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNS--SAVSAHNVLVLSLGDG-LSAWNRSSKQLRFVLIA 279 (326)
Q Consensus 205 ~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~--~~l~~~d~~~l~~g~~-l~i~a~~~~~a~~LL~~ 279 (326)
+.+++--+++.+|++..--+..++...+||++|++.. ++.-+ ..+.+||+..+..+-. ....+ |++.+-.++.-
T Consensus 44 s~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~-S~ep~s~vIaR 122 (142)
T COG4101 44 SGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANL-STEPLSAVIAR 122 (142)
T ss_pred ceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCccccc-CCCCeEEEEEc
Confidence 4566667789999988877888899999999999877 32111 3578999999985521 22222 23566666666
Q ss_pred eccCC
Q 020448 280 GQPLN 284 (326)
Q Consensus 280 G~pl~ 284 (326)
.+|-+
T Consensus 123 sDp~~ 127 (142)
T COG4101 123 SDPNP 127 (142)
T ss_pred cCCCC
Confidence 66653
No 45
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=88.01 E-value=2.1 Score=39.18 Aligned_cols=73 Identities=10% Similarity=0.013 Sum_probs=50.6
Q ss_pred cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeeccC
Q 020448 207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPL 283 (326)
Q Consensus 207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl 283 (326)
..+.-+++++|+.+-.-...+.. +.+|++|++.-++ ..+.+||.+.++.+..-+..+.+++++-+|.+.-.|+
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~G~E-~tlVLeG~f~de~---g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~dapl 199 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHKGFE-LTLVLHGAFSDET---GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLDAPL 199 (215)
T ss_pred cEEEEEEECCCCccCCCcCCCcE-EEEEEEEEEEcCC---CccCCCeEEECCCCCCcCcccCCCCCeEEEEEecCCc
Confidence 45555688999976544344444 6799999987544 6899999999998877777775444566555554454
No 46
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=85.80 E-value=2 Score=32.46 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=33.9
Q ss_pred ECCCCeEEEecCCCCeEEEEEeecceEEcCcC--ceeecCccEEEEcCCCeEEEEe
Q 020448 214 LKPRAQIHQSIPETWNAFVYTIEGEGVFGTVN--SSAVSAHNVLVLSLGDGLSAWN 267 (326)
Q Consensus 214 L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~--~~~l~~~d~~~l~~g~~l~i~a 267 (326)
-++|. +....+ ..-++|||+|+++|-+.+ ...+.+||++.|..|...+.+.
T Consensus 14 ~~pg~-~~~~~~--~~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~v 66 (74)
T PF05899_consen 14 CTPGK-FPWPYP--EDEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWEV 66 (74)
T ss_dssp EECEE-EEEEES--SEEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEEE
T ss_pred ECCce-eEeeCC--CCEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEEE
Confidence 35543 333333 377889999999995422 2678999999998876655544
No 47
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=85.71 E-value=15 Score=34.66 Aligned_cols=74 Identities=24% Similarity=0.291 Sum_probs=37.7
Q ss_pred CceEEEEecCCCCCCCCCceEEeecccCCCCCCC--CCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCC
Q 020448 59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGF--PDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRG 136 (326)
Q Consensus 59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF--~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsG 136 (326)
.+...+++.+.+. .-+|+.++=.| ++|| |+|-|. ...--||++|.+..-|---...-|.+|..-++-||
T Consensus 20 ~~~~~~~L~gd~~--~~g~~~~~vkf----~~g~~~pph~H~-~~~~~~Vi~G~~~~~~~~a~~~~l~~Gsy~~~PaG-- 90 (251)
T PF14499_consen 20 KGPGAAVLWGDPT--KDGPSGMRVKF----PAGFSSPPHIHN-ADYRGTVISGELHNGDPKAAAMWLPAGSYWFQPAG-- 90 (251)
T ss_dssp S--EEEEEEEE----TTS-EEEEEEE-----TT-EE--BEES-S-EEEEEEESEEEETTEE-----E-TTEEEEE-TT--
T ss_pred CCcceeeeecCcc--cCCcceEEEEc----CCCccCCCccee-eeEEEEEEEeEEEcCCCcccceecCCCceEeccCC--
Confidence 3678888888763 35777776444 4566 688887 45556899999877443211223666666666666
Q ss_pred eEEEe
Q 020448 137 IVHSE 141 (326)
Q Consensus 137 I~HsE 141 (326)
-.|--
T Consensus 91 ~~h~~ 95 (251)
T PF14499_consen 91 EPHIT 95 (251)
T ss_dssp -EEEE
T ss_pred Cceee
Confidence 44443
No 48
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=85.24 E-value=2.7 Score=39.11 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=44.1
Q ss_pred CCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448 91 GFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI 156 (326)
Q Consensus 91 GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi 156 (326)
-+++|-|..+|+ .|+++|.+.+.- -|..-.+.+|++-|+++| ..|......+. ..++-+.+
T Consensus 35 ~~~~H~H~~~ei-~~v~~G~~~~~i-~~~~~~l~~g~l~~i~p~--~~H~~~~~~~~-~~~~~l~~ 95 (278)
T PRK10296 35 VSGLHQHDYYEF-TLVLTGRYYQEI-NGKRVLLERGDFVFIPLG--SHHQSFYEFGA-TRILNVGI 95 (278)
T ss_pred CCCCcccccEEE-EEEEeceEEEEE-CCEEEEECCCcEEEeCCC--CccceeeeCCC-cEEEEEEe
Confidence 468999998876 899999998765 355678999999999776 67765433222 34554544
No 49
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=85.07 E-value=6.5 Score=35.52 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=60.0
Q ss_pred EEeecccCCCCCC------CCCCCCC--CceEEEEEeeceEEEe--cCCCC--eeeeeCCcEEEEecCCCeEEEeeeCCC
Q 020448 79 LMLDEFSVSPPAG------FPDHPHR--GFETVTYMLQGGITHQ--DFSGH--KGTIHTGDVQWMTAGRGIVHSEMPAGE 146 (326)
Q Consensus 79 l~lD~~~~~~~~G------F~~HPHr--G~EtvTyvl~G~l~H~--DS~Gn--~~~i~~GdvQwMtAGsGI~HsE~~~~~ 146 (326)
+.++.-.+.|+.- -+.|-|. +..=+-|+++|+-.+. |--|. ...++|||+-+..+ |..|.-.|.++
T Consensus 68 L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPp--g~~H~~iN~G~ 145 (191)
T PRK04190 68 LNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPP--YWAHRSVNTGD 145 (191)
T ss_pred eEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECC--CCcEEeEECCC
Confidence 5566666666542 1234454 5456789999986553 33333 46799999999998 68899999888
Q ss_pred CceeEEEEEeccCCCCCCCCCCccccC
Q 020448 147 GVQNGLQLWINLSSSDKMIEPRYQEIP 173 (326)
Q Consensus 147 ~~~~~lQLWinLP~~~k~~~P~Y~~~~ 173 (326)
.++.++=+| |+. ....|+.+.
T Consensus 146 epl~fl~v~---p~~---~~~dY~~i~ 166 (191)
T PRK04190 146 EPLVFLACY---PAD---AGHDYGTIA 166 (191)
T ss_pred CCEEEEEEE---cCC---cccccHHHH
Confidence 889888866 433 456788764
No 50
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=84.06 E-value=15 Score=31.13 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=57.0
Q ss_pred cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCc---CceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeeccC
Q 020448 207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTV---NSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPL 283 (326)
Q Consensus 207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~---~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl 283 (326)
..+-+-.+.+|++..+--. ++--.+|+++|+.+|... +...|.+|.+.+|+.-+.-.+.|. ++.+++.+--.|+
T Consensus 35 FS~h~T~i~aGtet~~~Yk-nHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~--~dm~~vCVFnPpl 111 (126)
T PF06339_consen 35 FSFHETTIYAGTETHIHYK-NHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAK--TDMRLVCVFNPPL 111 (126)
T ss_pred EEEEEEEEeCCCeeEEEec-CceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEec--CCEEEEEEcCCCC
Confidence 3455567899998775543 566789999999998532 236899999999987778888885 4788888887777
Q ss_pred C
Q 020448 284 N 284 (326)
Q Consensus 284 ~ 284 (326)
.
T Consensus 112 t 112 (126)
T PF06339_consen 112 T 112 (126)
T ss_pred c
Confidence 3
No 51
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=83.60 E-value=7 Score=36.38 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=40.8
Q ss_pred CeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448 218 AQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI 278 (326)
Q Consensus 218 ~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~ 278 (326)
+++.+.+ ++.=+.||++|++++ +|+ ...+.+||.+.+..|..+++... ..++++.+
T Consensus 167 ~sf~wtl--~~dEi~YVLEGe~~l~IdG~-t~~l~pGDvlfIPkGs~~hf~tp--~~aRflyV 224 (233)
T PRK15457 167 AFFPWTL--NYDEIDMVLEGELHVRHEGE-TMIAKAGDVMFIPKGSSIEFGTP--SSVRFLYV 224 (233)
T ss_pred Cccceec--cceEEEEEEEeEEEEEECCE-EEEeCCCcEEEECCCCeEEecCC--CCeeEEEE
Confidence 4455444 466899999998876 552 37899999999998888888542 46777554
No 52
>PLN02288 mannose-6-phosphate isomerase
Probab=82.10 E-value=13 Score=37.30 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=34.6
Q ss_pred ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCc---eeecCccEEEEcCCCe
Q 020448 206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNS---SAVSAHNVLVLSLGDG 262 (326)
Q Consensus 206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~---~~l~~~d~~~l~~g~~ 262 (326)
+..+..+++.++.+..++. ...-..+.|++|++++++..+ ..+..|+.+.+..++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~-~~gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPA-VPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTE 391 (394)
T ss_pred ceEEEEEEeCCCCeEeecC-CCCCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCCc
Confidence 3456667888877644322 233478899999999964221 2266777776654433
No 53
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=79.17 E-value=3.9 Score=35.68 Aligned_cols=41 Identities=27% Similarity=0.487 Sum_probs=33.1
Q ss_pred CceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEE
Q 020448 99 GFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHS 140 (326)
Q Consensus 99 G~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~Hs 140 (326)
..+=+-||++|+++-.+. |..-.-+||||-|+..|+=|.-+
T Consensus 94 ~YDEi~~VlEG~L~i~~~-G~~~~A~~GDvi~iPkGs~I~fs 134 (152)
T PF06249_consen 94 TYDEIKYVLEGTLEISID-GQTVTAKPGDVIFIPKGSTITFS 134 (152)
T ss_dssp SSEEEEEEEEEEEEEEET-TEEEEEETT-EEEE-TT-EEEEE
T ss_pred ecceEEEEEEeEEEEEEC-CEEEEEcCCcEEEECCCCEEEEe
Confidence 346678999999999866 99999999999999999999875
No 54
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=79.08 E-value=7.9 Score=30.70 Aligned_cols=51 Identities=16% Similarity=0.390 Sum_probs=31.6
Q ss_pred CeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448 228 WNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA 279 (326)
Q Consensus 228 ~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~ 279 (326)
.-.++||++|+..+ ++ +...+++||++.+..+..-.+...++++.+...+.
T Consensus 23 ~~~i~~v~~G~~~~~~~~-~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 23 FYEIIYVLSGEGTLHIDG-QEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp SEEEEEEEEE-EEEEETT-EEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred CEEEEEEeCCEEEEEECC-EEEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 45789999998877 44 23789999999999888777776533355544433
No 55
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=78.61 E-value=5.5 Score=33.61 Aligned_cols=67 Identities=21% Similarity=0.296 Sum_probs=45.4
Q ss_pred CCCCCCCCCCCCCCceEEEEEeeceEE--EecCCC-------Ceee--eeCCcEEEEecCCCeEEEeeeCCCCceeEEEE
Q 020448 86 VSPPAGFPDHPHRGFETVTYMLQGGIT--HQDFSG-------HKGT--IHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQL 154 (326)
Q Consensus 86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~--H~DS~G-------n~~~--i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQL 154 (326)
+.|+.-+.+|-| +-.-+.||++|+.. --+.-+ .... +++|||-++.+| ..|.-.|.++.....|=+
T Consensus 41 i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G--~~h~~~n~~~~~~~~~~~ 117 (144)
T PF00190_consen 41 IEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAG--HPHWIINDGDDEALVLII 117 (144)
T ss_dssp EETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT---EEEEEECSSSSEEEEEE
T ss_pred hhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccc--eeEEEEcCCCCCCEEEEE
Confidence 355656789999 88889999998865 333333 2345 999999999987 678888876344433333
Q ss_pred E
Q 020448 155 W 155 (326)
Q Consensus 155 W 155 (326)
+
T Consensus 118 f 118 (144)
T PF00190_consen 118 F 118 (144)
T ss_dssp E
T ss_pred E
Confidence 3
No 56
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=77.72 E-value=14 Score=37.95 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=49.4
Q ss_pred cccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCC
Q 020448 83 EFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSS 160 (326)
Q Consensus 83 ~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~ 160 (326)
...+.|++.-+.|.|+.-+=+=||++|+++-.-. |..-.|.+||.-.+.+| ..|.=.|..+.+++. |||..|+
T Consensus 389 ~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~id-g~~~~L~~GDSi~ip~g--~~H~~~N~g~~~l~i--I~V~~g~ 461 (478)
T PRK15460 389 RITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTID-GDIKLLGENESIYIPLG--ATHCLENPGKIPLDL--IEVRSGS 461 (478)
T ss_pred EEEECCCCcCCcCCCCCCceEEEEEeeEEEEEEC-CEEEEecCCCEEEECCC--CcEEEEcCCCCCEEE--EEEEcCC
Confidence 3456777655445554444445699999875433 45678999999999887 788877877777776 4664443
No 57
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=76.47 E-value=16 Score=33.54 Aligned_cols=69 Identities=25% Similarity=0.383 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCCCCceE--EEEEeece--EEEecCCCCee--eeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448 86 VSPPAGFPDHPHRGFET--VTYMLQGG--ITHQDFSGHKG--TIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI 156 (326)
Q Consensus 86 ~~~~~GF~~HPHrG~Et--vTyvl~G~--l~H~DS~Gn~~--~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi 156 (326)
+.++++--+|-|.+-+- +-|+++|+ |.=.|+-|+.. .+++||+=..--+.| |.-.|.+++++.++=+|=
T Consensus 87 ~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~g--H~t~N~Gd~pLvf~~v~~ 161 (209)
T COG2140 87 KTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYG--HYTINTGDEPLVFLNVYP 161 (209)
T ss_pred ecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcc--eEeecCCCCCEEEEEEEe
Confidence 46666777899999999 99999755 77888888754 356688877776655 999999999999998883
No 58
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=75.44 E-value=58 Score=32.61 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=36.3
Q ss_pred cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCc-CceeecCccEEEEcCC-CeEEEE
Q 020448 207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTV-NSSAVSAHNVLVLSLG-DGLSAW 266 (326)
Q Consensus 207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~-~~~~l~~~d~~~l~~g-~~l~i~ 266 (326)
..+..+.++.+ +.. ++.+.-..+.|++|+++|... +...+.+|+.+.+..+ ..++++
T Consensus 321 F~~~~~~l~~~-~~~--~~~~~~~Illv~~G~~~i~~~~~~~~l~~G~~~fipa~~~~~~~~ 379 (389)
T PRK15131 321 FAFSLHDLSDQ-PTT--LSQQSAAILFCVEGEAVLWKGEQQLTLKPGESAFIAANESPVTVS 379 (389)
T ss_pred cEEEEEEECCc-eEE--ecCCCcEEEEEEcceEEEEeCCeEEEECCCCEEEEeCCCccEEEe
Confidence 44445566543 333 333444788999999999632 1256889999998843 446665
No 59
>PRK13501 transcriptional activator RhaR; Provisional
Probab=75.28 E-value=4 Score=38.30 Aligned_cols=60 Identities=23% Similarity=0.224 Sum_probs=43.4
Q ss_pred CCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448 91 GFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI 156 (326)
Q Consensus 91 GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi 156 (326)
-+++|-|..+|+ .|+++|...|. --|..-.+.+|++-|+.+|. .|+-.... ...+..+++
T Consensus 30 ~~~~H~H~~~ei-~~i~~G~~~~~-i~~~~~~l~~g~~~~I~p~~--~H~~~~~~--~~~~~~~~~ 89 (290)
T PRK13501 30 TFVEHTHQFCEI-VIVWRGNGLHV-LNDHPYRITCGDVFYIQAAD--HHSYESVH--DLVLDNIIY 89 (290)
T ss_pred CCccccccceeE-EEEecCceEEE-ECCeeeeecCCeEEEEcCCC--cccccccC--CeEEEEEEe
Confidence 367899987775 58889999987 34566789999999999985 67744332 234455554
No 60
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=74.56 E-value=7.7 Score=34.10 Aligned_cols=79 Identities=10% Similarity=0.157 Sum_probs=46.5
Q ss_pred eEEEEEeecceEE--cCc---CceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc--------------CCCceee
Q 020448 229 NAFVYTIEGEGVF--GTV---NSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP--------------LNEPVVQ 289 (326)
Q Consensus 229 ~~~lyVl~G~~~i--~g~---~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p--------------l~epi~~ 289 (326)
.-++|+++|++.| .+. ....|++||+.++..+-.=+..+ .+++..|++.-+- -++.+..
T Consensus 49 dE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r--~~~t~~LvIE~~r~~~~~d~~~wyc~~c~~~~~e 126 (159)
T TIGR03037 49 EEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQR--PAGSIGLVIERKRPQGELDGFQWFCPQCGHKLHR 126 (159)
T ss_pred ceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCccccc--CCCcEEEEEEeCCCCCCCcceEEECCCCCCeEEE
Confidence 5789999999888 221 12679999999998654333333 2355555554321 1222222
Q ss_pred eCCcccCc-HHHHHHHHHHHhc
Q 020448 290 YGPFVMNS-QAEIDQTIEDYQL 310 (326)
Q Consensus 290 ~GpFVmnt-~~ei~~A~~dy~~ 310 (326)
.. |-+.+ ..+|..+|.+|.+
T Consensus 127 ~~-f~~~d~~~~~~~~~~~f~~ 147 (159)
T TIGR03037 127 AE-VQLENIVTDLPPVFEHFYS 147 (159)
T ss_pred EE-EEecChhhhhHHHHHHHhC
Confidence 22 33333 3678888888854
No 61
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=74.46 E-value=28 Score=25.59 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=38.8
Q ss_pred EEECCCCeEEEecCCCCeEEEEEeecceEEc--C-cCceeecCccEEEEcCCCeEEEEe
Q 020448 212 FTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--T-VNSSAVSAHNVLVLSLGDGLSAWN 267 (326)
Q Consensus 212 i~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g-~~~~~l~~~d~~~l~~g~~l~i~a 267 (326)
+.|.+|+...+....+ .-|-|.+|.+=+- | .++.-|.+||.+.+..++.+-+++
T Consensus 2 ~~L~~g~~~~lr~~~~--~~l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG--QRLRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCCC--cEEEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 4677888887776544 4489999987662 2 123678888888888778777776
No 62
>PLN00212 glutelin; Provisional
Probab=71.24 E-value=48 Score=34.32 Aligned_cols=76 Identities=9% Similarity=0.090 Sum_probs=49.6
Q ss_pred cCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--CcC-----ceeecCccEEEEcCCCeEEEEecCCCCeEEE
Q 020448 204 RTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVN-----SSAVSAHNVLVLSLGDGLSAWNRSSKQLRFV 276 (326)
Q Consensus 204 ~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~-----~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~L 276 (326)
...+.+..+.|.+|+-+.--....-+..+||++|++.|. +.+ ...|.+||+.++..+-.+...|. .++.+++
T Consensus 345 ~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~-~egfe~v 423 (493)
T PLN00212 345 LIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAE-REGCQYI 423 (493)
T ss_pred ccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeec-CCceEEE
Confidence 355677777889988542111133458999999999884 111 14689999999987776666664 3455555
Q ss_pred EEee
Q 020448 277 LIAG 280 (326)
Q Consensus 277 L~~G 280 (326)
.|..
T Consensus 424 ~F~t 427 (493)
T PLN00212 424 AFKT 427 (493)
T ss_pred Eeec
Confidence 4443
No 63
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=70.73 E-value=8.8 Score=31.99 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=35.7
Q ss_pred CCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecC-CCeE
Q 020448 91 GFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAG-RGIV 138 (326)
Q Consensus 91 GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAG-sGI~ 138 (326)
.|..+- +..=.-++|+|.++-.+--|..-.++|||+-.|.|| +|+.
T Consensus 56 ~~r~~y--~~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~g~W 102 (116)
T COG3450 56 KFRVTY--DEDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGFKGTW 102 (116)
T ss_pred cceEEc--ccceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCCeEEE
Confidence 454333 334456788999999999899999999999999999 4543
No 64
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=70.21 E-value=26 Score=32.46 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=39.0
Q ss_pred CCCCCCCCCC-ceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeC
Q 020448 90 AGFPDHPHRG-FETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPA 144 (326)
Q Consensus 90 ~GF~~HPHrG-~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~ 144 (326)
.-+++|.|.. +|++ |+++|.+...= -|..-.+.+|++-|+.+| +.|+-...
T Consensus 34 ~~~~~H~H~~~~~l~-~~~~G~~~~~~-~~~~~~l~~g~~~ii~~~--~~H~~~~~ 85 (287)
T TIGR02297 34 RNMPVHFHDRYYQLH-YLTEGSIALQL-DEHEYSEYAPCFFLTPPS--VPHGFVTD 85 (287)
T ss_pred CCCCCcccccceeEE-EEeeCceEEEE-CCEEEEecCCeEEEeCCC--CccccccC
Confidence 3478999984 6665 99999987643 245678999999999997 78875443
No 65
>PRK13500 transcriptional activator RhaR; Provisional
Probab=69.91 E-value=7.9 Score=36.98 Aligned_cols=50 Identities=24% Similarity=0.223 Sum_probs=38.6
Q ss_pred CCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeee
Q 020448 90 AGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMP 143 (326)
Q Consensus 90 ~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~ 143 (326)
..|++|-|.-+|+ .|+++|...|.=. |..-.+.+||+-++.+| ..|+-..
T Consensus 59 ~~~~~H~H~~~el-~~v~~G~g~~~v~-~~~~~l~~Gdl~~I~~~--~~H~~~~ 108 (312)
T PRK13500 59 DVFAEHTHDFCEL-VIVWRGNGLHVLN-DRPYRITRGDLFYIHAD--DKHSYAS 108 (312)
T ss_pred CCCCccccceEEE-EEEEcCeEEEEEC-CEEEeecCCeEEEECCC--Ceecccc
Confidence 3589999986665 5999999988533 45578999999999776 7787543
No 66
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=69.37 E-value=23 Score=33.19 Aligned_cols=68 Identities=10% Similarity=0.161 Sum_probs=49.8
Q ss_pred EEECCCCeEEEecCCCCeEEEEEeecceEEcCcCc---------eeec--CccEEEEcCCCeEEEEecCCCCeEEEEEee
Q 020448 212 FTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNS---------SAVS--AHNVLVLSLGDGLSAWNRSSKQLRFVLIAG 280 (326)
Q Consensus 212 i~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~---------~~l~--~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G 280 (326)
.+|++|++++.... ++..-|.+++|.++|..... ..++ +-|.+.+..|...+++|. .++++-|+++
T Consensus 34 ~~L~~Ges~~~~~~-~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~--t~~~vAvC~A 110 (270)
T COG3718 34 LRLAAGESATEETG-DRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTAT--TDLEVAVCSA 110 (270)
T ss_pred EEccCCCcccccCC-CceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEee--cceEEEEEeC
Confidence 37899999886664 66788899999999852110 1122 458888888999999995 5788888876
Q ss_pred cc
Q 020448 281 QP 282 (326)
Q Consensus 281 ~p 282 (326)
.-
T Consensus 111 P~ 112 (270)
T COG3718 111 PG 112 (270)
T ss_pred CC
Confidence 53
No 67
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=69.29 E-value=22 Score=30.86 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=53.2
Q ss_pred ecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEE
Q 020448 82 DEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLW 155 (326)
Q Consensus 82 D~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLW 155 (326)
-...+.|+.-+..|-|..-...=+|++|...=. --+....+.+|+.-+..+| ..|.=.|....++.++.+=
T Consensus 66 kri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~-~~~~~~~~~~g~sv~Ip~g--~~H~i~n~g~~~L~~IEVq 136 (151)
T PF01050_consen 66 KRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVT-LDDEEFTLKEGDSVYIPRG--AKHRIENPGKTPLEIIEVQ 136 (151)
T ss_pred EEEEEcCCCccceeeecccccEEEEEeCeEEEE-ECCEEEEEcCCCEEEECCC--CEEEEECCCCcCcEEEEEe
Confidence 334468888888888888888888998876554 1355678999999888776 7898888776778776654
No 68
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=68.41 E-value=43 Score=27.87 Aligned_cols=68 Identities=10% Similarity=0.156 Sum_probs=41.5
Q ss_pred cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-CcCceeecCccEEEEcCCCeEEEEecCCCCeEEE
Q 020448 207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-TVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFV 276 (326)
Q Consensus 207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~L 276 (326)
+.+..+.......+..+-+.+.-..+++++|...+. +.....+.+|+++.++.+...++... .+.+.+
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~g~~~~~~pg~~~l~d~~~~~~~~~~--~~~~~~ 102 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQGGREVELAPGDVVLLDPGQPYRLEFS--AGCRQL 102 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEECCEEEEEcCCeEEEEcCCCCEEEEEC--CCccEE
Confidence 445544444333332222234557778889988773 21236799999999998888887764 344443
No 69
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=67.65 E-value=26 Score=30.87 Aligned_cols=51 Identities=27% Similarity=0.396 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCCCceEEEEEeeceEEE--ecCCCC--eeeeeCCcEEEEecCCCeEEEe
Q 020448 87 SPPAGFPDHPHRGFETVTYMLQGGITH--QDFSGH--KGTIHTGDVQWMTAGRGIVHSE 141 (326)
Q Consensus 87 ~~~~GF~~HPHrG~EtvTyvl~G~l~H--~DS~Gn--~~~i~~GdvQwMtAGsGI~HsE 141 (326)
.|++.+..|-|.. |-+=|+++|+|.= +|. |. .-.|++||+-...+| +-|+=
T Consensus 36 Gpn~R~d~H~~~t-dE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~g--vpHsP 90 (159)
T TIGR03037 36 GPNARTDFHDDPG-EEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPH--VPHSP 90 (159)
T ss_pred CCCCCcccccCCC-ceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCC--CCccc
Confidence 4556788898885 8888999999877 554 32 568999999888876 66653
No 70
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=65.36 E-value=42 Score=25.62 Aligned_cols=54 Identities=13% Similarity=0.254 Sum_probs=33.5
Q ss_pred ECCCCeEEEecCCCCeEEEEEe----ecceEE---cCc-CceeecCccEEEEc-CCCeEEEEe
Q 020448 214 LKPRAQIHQSIPETWNAFVYTI----EGEGVF---GTV-NSSAVSAHNVLVLS-LGDGLSAWN 267 (326)
Q Consensus 214 L~~g~~~~~~~p~~~~~~lyVl----~G~~~i---~g~-~~~~l~~~d~~~l~-~g~~l~i~a 267 (326)
++.|+++.+.+..++.+|+|++ +|++.. |.. ....+.++....|. ++....++.
T Consensus 3 ~~~Ge~v~~~~~~~~~~Yl~l~~~~~~G~v~~L~Pn~~~~~~~v~ag~~~~iP~~~~~~~~~v 65 (83)
T PF14326_consen 3 YRVGERVRFRVTSNRDGYLYLFYIDADGKVTLLFPNRYQPDNFVKAGQTYTIPDPGDRFSFTV 65 (83)
T ss_pred ccCCCEEEEEEEeCCCeEEEEEEECCCCCEEEEecCccccCceEcCCceEEcCCCCCceEEEE
Confidence 4667788888877777777776 455544 110 01457778888887 344555554
No 71
>PRK13503 transcriptional activator RhaS; Provisional
Probab=65.20 E-value=9.3 Score=35.21 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=37.5
Q ss_pred CCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEe
Q 020448 90 AGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSE 141 (326)
Q Consensus 90 ~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE 141 (326)
..++.|-|..+| +.|+++|...+.-.. ..-.+++|++-|+.+| ..|+-
T Consensus 26 ~~~~~H~H~~~e-i~~v~~G~~~~~i~~-~~~~l~~g~~~~i~~~--~~h~~ 73 (278)
T PRK13503 26 AAFPEHHHDFHE-IVIVEHGTGIHVFNG-QPYTLSGGTVCFVRDH--DRHLY 73 (278)
T ss_pred ccccccccCcee-EEEEecCceeeEecC-CcccccCCcEEEECCC--ccchh
Confidence 456889998887 569999999886543 3578999999999986 46753
No 72
>PHA02984 hypothetical protein; Provisional
Probab=64.45 E-value=40 Score=32.11 Aligned_cols=84 Identities=17% Similarity=0.325 Sum_probs=61.1
Q ss_pred ecCCCCeEEEEEeecceEEcCcC-----ceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeeccCCCceeeeCCcccCc
Q 020448 223 SIPETWNAFVYTIEGEGVFGTVN-----SSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNS 297 (326)
Q Consensus 223 ~~p~~~~~~lyVl~G~~~i~g~~-----~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~epi~~~GpFVmnt 297 (326)
.+.+....|+..+.|+..|+-.. ...+.+|++..++-+..=.+... +.+.+++++--+- +-|++.|++-|+..
T Consensus 88 ~~esnEy~FvlCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~-~knl~L~Vi~y~v-~~pfihykNvV~S~ 165 (286)
T PHA02984 88 TLESNEYMFVLCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTK-DKNLHLAVITYTS-NCPFIHYKNIVFSE 165 (286)
T ss_pred EeeeccEEEEEEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeC-CCceEEEEEEEEe-cceEEEeccEEEcc
Confidence 34455568999999999996211 13588999998884433333332 4689998888765 79999999999999
Q ss_pred HHHHHHHHHHH
Q 020448 298 QAEIDQTIEDY 308 (326)
Q Consensus 298 ~~ei~~A~~dy 308 (326)
.+-+-.+|--|
T Consensus 166 ds~vy~~FsGy 176 (286)
T PHA02984 166 DSFVYNIFSGY 176 (286)
T ss_pred chhhhhhhcCC
Confidence 88888777554
No 73
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=63.65 E-value=12 Score=34.82 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=34.8
Q ss_pred CCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCe
Q 020448 96 PHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGI 137 (326)
Q Consensus 96 PHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI 137 (326)
-|-+.+=+.||++|+++-... |..-.++|||+-++..|.=+
T Consensus 171 wtl~~dEi~YVLEGe~~l~Id-G~t~~l~pGDvlfIPkGs~~ 211 (233)
T PRK15457 171 WTLNYDEIDMVLEGELHVRHE-GETMIAKAGDVMFIPKGSSI 211 (233)
T ss_pred eeccceEEEEEEEeEEEEEEC-CEEEEeCCCcEEEECCCCeE
Confidence 455667788999999998885 88899999999999998654
No 74
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.51 E-value=96 Score=30.28 Aligned_cols=190 Identities=17% Similarity=0.248 Sum_probs=105.1
Q ss_pred CCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEec---cCCCCC
Q 020448 87 SPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWIN---LSSSDK 163 (326)
Q Consensus 87 ~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWin---LP~~~k 163 (326)
.|+.--|.|-|. ...+-+|++|.-...-=-|.+..+++||+-..-++ -+|.-.|..+++| +|++ +|-.+.
T Consensus 100 lPGEvApsHrHs-qsAlRFvveG~Ga~T~VdGer~~M~~GDfilTP~w--~wHdHgn~g~eP~----iWlDgLDiplv~~ 172 (351)
T COG3435 100 LPGEVAPSHRHN-QSALRFVVEGKGAYTVVDGERTPMEAGDFILTPAW--TWHDHGNEGTEPC----IWLDGLDIPLVNS 172 (351)
T ss_pred cCcccCCccccc-ccceEEEEeccceeEeecCceeeccCCCEEEccCc--eeccCCCCCCCce----EEEcccchHHHHh
Confidence 556566888886 88999999998777666788899999998776655 5777777777777 6764 454333
Q ss_pred CCCCCccccCCCccceecCC-CeEEE------EEeCCCCCCcCccccc------------------CccEEEEEEE-CC-
Q 020448 164 MIEPRYQEIPSEEIKRAETD-GVEVR------IIAGESMGVRSPVYTR------------------TPTMFLDFTL-KP- 216 (326)
Q Consensus 164 ~~~P~Y~~~~~~~iP~~~~~-g~~~r------ViaG~~~g~~sp~~~~------------------~~~~~~di~L-~~- 216 (326)
+..-.|...+.+.-|+...+ +...| =+.-+.....||+-.+ .|..-+.++. ++
T Consensus 173 l~~gFfe~~~e~~q~v~~~~~d~~ar~~~~~rP~~~r~~~~~SPlf~Y~w~~t~eAL~~la~~e~~dp~dG~~~ryvNP~ 252 (351)
T COG3435 173 LGAGFFEEHPEEQQPVTRPEGDSLARYGPGMRPLRHRWGKPYSPLFNYAWDRTREALERLARLEEPDPFDGYKMRYVNPV 252 (351)
T ss_pred hcccccccCchhcCcccCCCCCchhhcCCCccccccCCCCCCCcccccccccHHHHHHHHHhccCCCCCCcceEEEecCC
Confidence 33334444444444443222 12223 1211111112444211 0111111111 00
Q ss_pred -CCe-------EEEecCCCC---------eEEEEEeecceE--EcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEE
Q 020448 217 -RAQ-------IHQSIPETW---------NAFVYTIEGEGV--FGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVL 277 (326)
Q Consensus 217 -g~~-------~~~~~p~~~---------~~~lyVl~G~~~--i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL 277 (326)
|.. +-+-+|+|+ +....|.+|+.. |||+ .....++|...+..=...++.+. .+++-+..
T Consensus 253 TGg~~mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~Ig~~-rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFs 330 (351)
T COG3435 253 TGGYAMPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVEGSGYTIIGGE-RFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFS 330 (351)
T ss_pred CCCCcCchHHHHHHhcCCcccCCceeccCCEEEEEEecceeEEECCE-EeeccCCCEEEccCcceeecccC-CcceEEEe
Confidence 000 011233332 234447888754 5662 25678999998876566777775 35777777
Q ss_pred EeeccCCC
Q 020448 278 IAGQPLNE 285 (326)
Q Consensus 278 ~~G~pl~e 285 (326)
|+-.|+-|
T Consensus 331 fsD~PV~e 338 (351)
T COG3435 331 FSDRPVME 338 (351)
T ss_pred cCCcHHHH
Confidence 77667544
No 75
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=61.07 E-value=1.6e+02 Score=28.76 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=30.9
Q ss_pred CeEEEEEeecceEEcCc-CceeecCccEEEEcC-CCeEEEEe
Q 020448 228 WNAFVYTIEGEGVFGTV-NSSAVSAHNVLVLSL-GDGLSAWN 267 (326)
Q Consensus 228 ~~~~lyVl~G~~~i~g~-~~~~l~~~d~~~l~~-g~~l~i~a 267 (326)
.-..++|++|++++.+. +...+++|+.+.+.. ...++|++
T Consensus 260 ~~~il~v~eG~~~l~~~~~~~~l~~G~s~~ipa~~~~~~i~g 301 (312)
T COG1482 260 SFSILLVLEGEGTLIGGGQTLKLKKGESFFIPANDGPYTIEG 301 (312)
T ss_pred CcEEEEEEcCeEEEecCCEEEEEcCCcEEEEEcCCCcEEEEe
Confidence 45789999999998652 225789999999984 46788886
No 76
>PLN00212 glutelin; Provisional
Probab=60.35 E-value=21 Score=36.99 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=45.4
Q ss_pred CCCCCCCCCCCCCCceEEEEEeece--EEEecCCCCe---eeeeCCcEEEEecCCCeEEEee
Q 020448 86 VSPPAGFPDHPHRGFETVTYMLQGG--ITHQDFSGHK---GTIHTGDVQWMTAGRGIVHSEM 142 (326)
Q Consensus 86 ~~~~~GF~~HPHrG~EtvTyvl~G~--l~H~DS~Gn~---~~i~~GdvQwMtAGsGI~HsE~ 142 (326)
+.+++-++||-|.+---|.||++|. +.--|+.|+. +.|++|||-++-+|. .|...
T Consensus 355 L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~--~v~~~ 414 (493)
T PLN00212 355 LYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHY--AVLKK 414 (493)
T ss_pred EcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCC--eEEEe
Confidence 4677789999999999999999865 6677888886 569999999999986 66544
No 77
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=59.88 E-value=34 Score=25.75 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=38.9
Q ss_pred CeEEEEEe--ecceEEcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeeccCCC
Q 020448 228 WNAFVYTI--EGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNE 285 (326)
Q Consensus 228 ~~~~lyVl--~G~~~i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~e 285 (326)
..+|+-|. +|+.... ..+.+|+...+...+.++|... +..+--|-+.|++++-
T Consensus 7 ~~sWv~V~d~dG~~~~~----~~l~~G~~~~~~~~~~~~i~iG-na~~v~v~~nG~~~~~ 61 (77)
T PF13464_consen 7 GDSWVEVTDADGKVLFS----GTLKAGETKTFEGKEPFRIRIG-NAGAVEVTVNGKPVDL 61 (77)
T ss_pred CCeEEEEEeCCCcEeee----eeeCCCcEEEEeCCCCEEEEEe-CCCcEEEEECCEECCC
Confidence 45778777 6666665 4789999999987788888765 3456678888888743
No 78
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=59.34 E-value=1.4e+02 Score=26.98 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=47.4
Q ss_pred cCccEEEEEEECCCCeE-EEecCC-------CCeEEEEEeecceEE--cCcC----ceeecCccEEEEcCCCeEEEEecC
Q 020448 204 RTPTMFLDFTLKPRAQI-HQSIPE-------TWNAFVYTIEGEGVF--GTVN----SSAVSAHNVLVLSLGDGLSAWNRS 269 (326)
Q Consensus 204 ~~~~~~~di~L~~g~~~-~~~~p~-------~~~~~lyVl~G~~~i--~g~~----~~~l~~~d~~~l~~g~~l~i~a~~ 269 (326)
...+.+-...|.+|... ++...+ ++.=+.||++|++.+ ++.+ ...+.+||.+.+..+..=.+.+.+
T Consensus 65 ~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G 144 (191)
T PRK04190 65 EGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTG 144 (191)
T ss_pred CCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECC
Confidence 34566666788888842 111111 223578899998766 3322 257899999999876543455544
Q ss_pred CCCeEEEEEee
Q 020448 270 SKQLRFVLIAG 280 (326)
Q Consensus 270 ~~~a~~LL~~G 280 (326)
+++.+||.+.-
T Consensus 145 ~epl~fl~v~p 155 (191)
T PRK04190 145 DEPLVFLACYP 155 (191)
T ss_pred CCCEEEEEEEc
Confidence 56677666543
No 79
>PF05775 AfaD: Enterobacteria AfaD invasin protein; InterPro: IPR008394 This family consists of several AfaD and related proteins from Escherichia coli and Salmonella bacteria. The afa gene clusters encode an afimbrial adhesive sheath produced by E. coli. The adhesive sheath is composed of two proteins, AfaD and AfaE, which are independently exposed at the bacterial cell surface. AfaE is required for bacterial adhesion to HeLa cells and AfaD for the uptake of adherent bacteria into these cells [].; GO: 0009289 pilus; PDB: 3UIZ_F 3UIY_A 2AXW_A 2IXQ_A 2FVN_A.
Probab=58.90 E-value=79 Score=26.18 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=42.1
Q ss_pred eeEEEEEeccCCCCCCCCCCccccCCCccceecCCCeEEEEEe-CC-C-----CCCcCccc-ccCccEEEEEEECCCCeE
Q 020448 149 QNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIA-GE-S-----MGVRSPVY-TRTPTMFLDFTLKPRAQI 220 (326)
Q Consensus 149 ~~~lQLWinLP~~~k~~~P~Y~~~~~~~iP~~~~~g~~~rVia-G~-~-----~g~~sp~~-~~~~~~~~di~L~~g~~~ 220 (326)
=.|||+|.|.+.. ...+-+|.-.-.. .....+||-. |+ + ++..+-+. +......+||-.+.+.+
T Consensus 25 htGF~Vw~na~~~-~g~p~~Yil~G~~------~~~h~LrVRlgg~gW~pd~~~g~~Giv~~~~e~~~~Fdvv~DGnQ~- 96 (111)
T PF05775_consen 25 HTGFHVWSNARQV-GGRPGRYILQGKR------NSQHELRVRLGGEGWQPDVREGGQGIVSHGGEEQAIFDVVADGNQR- 96 (111)
T ss_dssp SSEEEEEESSEES-TTSTTEEEEEBCS------SSS-EEEEEEETTT-EE--STTSSSEEEETTSSEEEEEEEECSSSE-
T ss_pred ceEEEEEeechhc-CCCccEEEEeCCC------CCCceEEEEeCCCCcccccccCceEEEEeccccccEEEEEEeCCEe-
Confidence 3589999998764 4556667643211 1123566633 32 1 12233333 24556778887777654
Q ss_pred EEecCCCCeEEEEEeecce
Q 020448 221 HQSIPETWNAFVYTIEGEG 239 (326)
Q Consensus 221 ~~~~p~~~~~~lyVl~G~~ 239 (326)
++++ .|++-+.|++
T Consensus 97 ---v~~d--~Y~~sv~g~~ 110 (111)
T PF05775_consen 97 ---VPPD--EYVLSVSGEC 110 (111)
T ss_dssp -----SC--EEEEEEEEEE
T ss_pred ---cCCC--EEEEEEEEEe
Confidence 4444 6777777754
No 80
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=56.67 E-value=30 Score=31.57 Aligned_cols=50 Identities=34% Similarity=0.608 Sum_probs=32.0
Q ss_pred ccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEe
Q 020448 84 FSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSE 141 (326)
Q Consensus 84 ~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE 141 (326)
.++.++.-||.|-|.|+|.+ -+++|.+. |-.| .+.+||+ |-|=-++.|+=
T Consensus 133 lki~~g~s~P~HtH~G~E~t-~vl~G~~s--de~G---~y~vgD~--~~~d~~v~H~p 182 (216)
T COG3806 133 LKIEPGRSFPDHTHVGIERT-AVLEGAFS--DENG---EYLVGDF--TLADGTVQHSP 182 (216)
T ss_pred EEeccCcccccccccceEEE-EEEeeccc--cCCC---ccccCce--eecCCcccccc
Confidence 45678888999999999985 56676652 2223 4555553 34444566664
No 81
>PRK13502 transcriptional activator RhaR; Provisional
Probab=56.52 E-value=22 Score=32.95 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=39.6
Q ss_pred CCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeee
Q 020448 91 GFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMP 143 (326)
Q Consensus 91 GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~ 143 (326)
.+++|.|. +=-+.|+++|...+.- -|..-.+.||++-|+.+| ..|+...
T Consensus 30 ~~~~H~h~-~~~l~~v~~G~~~~~i-~~~~~~l~~g~l~li~~~--~~H~~~~ 78 (282)
T PRK13502 30 VFAEHTHE-FCELVMVWRGNGLHVL-NERPYRITRGDLFYIRAE--DKHSYTS 78 (282)
T ss_pred CCCccccc-eEEEEEEecCcEEEEE-CCEEEeecCCcEEEECCC--Ccccccc
Confidence 47889997 5556799999998874 466689999999999887 6887654
No 82
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=56.50 E-value=17 Score=30.25 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=25.9
Q ss_pred CeEEEEEeecceEEc--CcCceeecCccEEEEcCCC
Q 020448 228 WNAFVYTIEGEGVFG--TVNSSAVSAHNVLVLSLGD 261 (326)
Q Consensus 228 ~~~~lyVl~G~~~i~--g~~~~~l~~~d~~~l~~g~ 261 (326)
+.=|.|+|+|.+++- +.+...+++||++.|..|-
T Consensus 63 ~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~ 98 (116)
T COG3450 63 EDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGF 98 (116)
T ss_pred cceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCC
Confidence 467999999999994 2222568899999998664
No 83
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=55.75 E-value=73 Score=30.53 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=40.4
Q ss_pred CCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCe-EEEEec-CCCCeEEEEEeecc
Q 020448 226 ETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDG-LSAWNR-SSKQLRFVLIAGQP 282 (326)
Q Consensus 226 ~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~-l~i~a~-~~~~a~~LL~~G~p 282 (326)
..+...+..+.|.++| +|+. ..+...|++.+..|.. +.+++. +..+++|.+.+..-
T Consensus 72 ~rrE~giV~lgG~~~V~vdG~~-~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAPA 131 (276)
T PRK00924 72 ERRELGIINIGGAGTVTVDGET-YELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAPA 131 (276)
T ss_pred CCcEEEEEEccceEEEEECCEE-EecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEcccc
Confidence 3567889999998776 4522 5588999999997755 777532 13468999998764
No 84
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=52.22 E-value=33 Score=30.72 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=44.8
Q ss_pred eEEEEEeecceEEc----Cc-CceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeec-cC-------------CCceee
Q 020448 229 NAFVYTIEGEGVFG----TV-NSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ-PL-------------NEPVVQ 289 (326)
Q Consensus 229 ~~~lyVl~G~~~i~----g~-~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~-pl-------------~epi~~ 289 (326)
.-++|+++|++.|. |+ ....|.+||+..+..+-.=+..+ .+++..|++.-+ +. ++.+..
T Consensus 55 dE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r--~~~tv~LviE~~r~~~~~d~~~wyc~~c~~~~~e 132 (177)
T PRK13264 55 EEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQR--EAGSIGLVIERKRPEGELDGFQWYCDECNHKVHE 132 (177)
T ss_pred ceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCcc--CCCeEEEEEEeCCCCCCccceEEECCCCCCeEEE
Confidence 46899999997653 21 12579999999998553322222 134555555322 11 222222
Q ss_pred eCCcccCc-HHHHHHHHHHHhc
Q 020448 290 YGPFVMNS-QAEIDQTIEDYQL 310 (326)
Q Consensus 290 ~GpFVmnt-~~ei~~A~~dy~~ 310 (326)
.. |.+.+ ..+|..+|.+|.+
T Consensus 133 ~~-f~~~d~~~~~~~~~~~f~~ 153 (177)
T PRK13264 133 VE-VQLTDIETDLPPVFAAFYA 153 (177)
T ss_pred EE-EEecChhhhhHHHHHHHhc
Confidence 22 33333 3778888888854
No 85
>PF12852 Cupin_6: Cupin
Probab=49.37 E-value=58 Score=28.33 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=35.5
Q ss_pred CCCCeEEEecCCC-CeEEEEEeecceEEc--C-cCceeecCccEEEEcCCCeEEE
Q 020448 215 KPRAQIHQSIPET-WNAFVYTIEGEGVFG--T-VNSSAVSAHNVLVLSLGDGLSA 265 (326)
Q Consensus 215 ~~g~~~~~~~p~~-~~~~lyVl~G~~~i~--g-~~~~~l~~~d~~~l~~g~~l~i 265 (326)
+.+..+.+..|.. .-.|.+|.+|+..+. + .+...+++||.+.+..+..-.+
T Consensus 21 ~~~~~W~~~~~~~~~~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l 75 (186)
T PF12852_consen 21 ELCGPWGLRFPGSPGASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVL 75 (186)
T ss_pred EEeCCcEEeccCCCceEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEe
Confidence 3344555566654 468888999998885 3 2337899999999986655554
No 86
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=47.54 E-value=46 Score=29.79 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCCceEEEEEeeceE--EEecCCC-CeeeeeCCcEEEEecCCCeEEEe
Q 020448 88 PPAGFPDHPHRGFETVTYMLQGGI--THQDFSG-HKGTIHTGDVQWMTAGRGIVHSE 141 (326)
Q Consensus 88 ~~~GF~~HPHrG~EtvTyvl~G~l--~H~DS~G-n~~~i~~GdvQwMtAGsGI~HsE 141 (326)
|+..++.|-|.+ |-+-|+++|++ .-+|... ....|++||+-..-+| +-|+=
T Consensus 43 pn~r~d~H~~~t-dE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~g--vpHsP 96 (177)
T PRK13264 43 PNARTDFHYDPG-EEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPH--VPHSP 96 (177)
T ss_pred CCcccccccCCC-ceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCC--CCcCC
Confidence 444688899887 77789999995 4556211 3567999998888876 56653
No 87
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=44.59 E-value=1.3e+02 Score=25.13 Aligned_cols=71 Identities=13% Similarity=0.078 Sum_probs=32.3
Q ss_pred ECCCCeEEEecCCCCeEEEEEeecceEEc---CcC--ceeecCc-cEEEEcCCCeEEEEecCCCCeEEEEEeeccCCC
Q 020448 214 LKPRAQIHQSIPETWNAFVYTIEGEGVFG---TVN--SSAVSAH-NVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNE 285 (326)
Q Consensus 214 L~~g~~~~~~~p~~~~~~lyVl~G~~~i~---g~~--~~~l~~~-d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~e 285 (326)
.++|..--.-......-+++|++|++.|. +.+ ...|... +.+.+..+---.+++.+ +++-+|+++.++.++
T Consensus 40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s-~~svlLv~as~~yd~ 116 (131)
T PF05523_consen 40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFS-EDSVLLVLASEPYDE 116 (131)
T ss_dssp --SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE----TT-EEEEEESS---G
T ss_pred CCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccC-CCcEEEEEcCCCCCh
Confidence 44554332223334457999999999884 211 1234444 34555566556676664 569999999988765
No 88
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=44.29 E-value=22 Score=24.29 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=15.2
Q ss_pred cHHHHHHHHHHHhccCCCC
Q 020448 297 SQAEIDQTIEDYQLCKNGF 315 (326)
Q Consensus 297 t~~ei~~A~~dy~~g~~g~ 315 (326)
|.+.|++|+.++++|++.+
T Consensus 1 tee~l~~Ai~~v~~g~~S~ 19 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSI 19 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-H
T ss_pred CHHHHHHHHHHHHhCCCCH
Confidence 5789999999999997644
No 89
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=43.98 E-value=39 Score=28.55 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=58.8
Q ss_pred ccccceEEcCCccCCCCceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecC-CCCee
Q 020448 43 PRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDF-SGHKG 121 (326)
Q Consensus 43 ~r~i~~~~~~~~~~~G~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS-~Gn~~ 121 (326)
.|++..+......-.+++..-+|++=..+-..| - +.+-.+.++.-..+|=-.-+|.| |+++|+-+-+|- .|..-
T Consensus 3 VR~l~di~~Tdr~V~~~~w~SrRlll~~DgmGF---S-~h~T~i~aGtet~~~YknHlEAv-yci~G~Gev~~~~~G~~~ 77 (126)
T PF06339_consen 3 VRSLDDIRGTDRDVDAENWESRRLLLKDDGMGF---S-FHETTIYAGTETHIHYKNHLEAV-YCIEGEGEVEDLDTGEVH 77 (126)
T ss_pred EEEHHHhcCCceeEEcCCceEEEEEEccCCCCE---E-EEEEEEeCCCeeEEEecCceEEE-EEEeceEEEEEccCCcEE
Confidence 455544443322223446777887655433322 1 22223445555556666668887 788877777775 67788
Q ss_pred eeeCCcEEEEecCCCeEEEeeeC-CCCceeEEEEE
Q 020448 122 TIHTGDVQWMTAGRGIVHSEMPA-GEGVQNGLQLW 155 (326)
Q Consensus 122 ~i~~GdvQwMtAGsGI~HsE~~~-~~~~~~~lQLW 155 (326)
.|+||-+.-+.. |.+.-. ....++.+=.+
T Consensus 78 ~i~pGt~YaLd~-----hD~H~lra~~dm~~vCVF 107 (126)
T PF06339_consen 78 PIKPGTMYALDK-----HDRHYLRAKTDMRLVCVF 107 (126)
T ss_pred EcCCCeEEecCC-----CccEEEEecCCEEEEEEc
Confidence 899998777664 333321 12356666554
No 90
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=43.31 E-value=2e+02 Score=27.18 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=40.1
Q ss_pred CeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCC---CeEEEEEeecceEEcCcC--ceeecCccEEEEc
Q 020448 184 GVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPET---WNAFVYTIEGEGVFGTVN--SSAVSAHNVLVLS 258 (326)
Q Consensus 184 g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~---~~~~lyVl~G~~~i~g~~--~~~l~~~d~~~l~ 258 (326)
+...+++.|.- +..-...+.+++.+|=+ .|++ ...-+|||+|.+..++.+ ...|.+|....+.
T Consensus 21 ~~~~~~L~gd~--------~~~g~~~~~vkf~~g~~----~pph~H~~~~~~~Vi~G~~~~~~~~a~~~~l~~Gsy~~~P 88 (251)
T PF14499_consen 21 GPGAAVLWGDP--------TKDGPSGMRVKFPAGFS----SPPHIHNADYRGTVISGELHNGDPKAAAMWLPAGSYWFQP 88 (251)
T ss_dssp --EEEEEEEE----------TTS-EEEEEEE-TT-E----E--BEESS-EEEEEEESEEEETTEE-----E-TTEEEEE-
T ss_pred CcceeeeecCc--------ccCCcceEEEEcCCCcc----CCCcceeeeEEEEEEEeEEEcCCCcccceecCCCceEecc
Confidence 45677777752 22334566788888753 4443 248899999999998721 0128899988887
Q ss_pred CCCeEEEEec
Q 020448 259 LGDGLSAWNR 268 (326)
Q Consensus 259 ~g~~l~i~a~ 268 (326)
.| .-.+++.
T Consensus 89 aG-~~h~~~~ 97 (251)
T PF14499_consen 89 AG-EPHITAA 97 (251)
T ss_dssp TT--EEEETT
T ss_pred CC-Cceeeec
Confidence 66 5566653
No 91
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=41.95 E-value=1.5e+02 Score=29.73 Aligned_cols=63 Identities=11% Similarity=0.154 Sum_probs=47.7
Q ss_pred CccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCc--CceeecCccEEEEcCCCeEEEEec
Q 020448 205 TPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTV--NSSAVSAHNVLVLSLGDGLSAWNR 268 (326)
Q Consensus 205 ~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~--~~~~l~~~d~~~l~~g~~l~i~a~ 268 (326)
.+.++..+++..|++..++.-++ -..+.|++|+.++... ....++.|+.+.+.....++|++.
T Consensus 331 ~eF~v~~~~v~~g~~~~~~~~~~-~SIllv~~G~g~l~~~t~~~~~v~rG~V~fI~a~~~i~~~~~ 395 (411)
T KOG2757|consen 331 EEFAVLETKVPTGESYKFPGVDG-PSILLVLKGSGILKTDTDSKILVNRGDVLFIPANHPIHLSSS 395 (411)
T ss_pred cceeEEEeecCCCceEEeecCCC-ceEEEEEecceEEecCCCCceeeccCcEEEEcCCCCceeecc
Confidence 45678888999998877655433 4778899999999753 125788999999987777888874
No 92
>PF15220 HILPDA: Hypoxia-inducible lipid droplet-associated
Probab=40.98 E-value=19 Score=26.08 Aligned_cols=15 Identities=60% Similarity=1.347 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCCCc
Q 020448 86 VSPPAGFPDHPHRGF 100 (326)
Q Consensus 86 ~~~~~GF~~HPHrG~ 100 (326)
-++++|.|.||-||+
T Consensus 49 te~pk~lpdhpsrgv 63 (63)
T PF15220_consen 49 TEPPKGLPDHPSRGV 63 (63)
T ss_pred CCCCCCCCCCCcCCC
Confidence 467889999999985
No 93
>PRK11396 hypothetical protein; Provisional
Probab=40.43 E-value=64 Score=29.25 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=36.0
Q ss_pred cCCCCeEEEEEeecceEEcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEee
Q 020448 224 IPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAG 280 (326)
Q Consensus 224 ~p~~~~~~lyVl~G~~~i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G 280 (326)
++......+||+.|+-.+++ +.+.++|.+....+.. ++... +.++.+|++.-
T Consensus 128 ~~~~~~gvv~vl~G~w~~~~---~~l~~gqG~~w~~~~~-~~~pl-~~~a~ll~~~i 179 (191)
T PRK11396 128 TFGSRGGVVFVINGAWQLGD---KLLTTDQGACWFDGRH-TLRLL-QPQGKLLFSEI 179 (191)
T ss_pred cCcCcccEEEEEeceeccCC---EEEecCCCceEecCCC-cEEEc-cCCceEEEEEE
Confidence 55566678999999999887 7888999888764432 23322 24677777654
No 94
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=39.52 E-value=1.5e+02 Score=26.05 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=47.3
Q ss_pred CCCCCCCCCCCCCCceEEEEEeeceEEEe----cCCC-------CeeeeeCCcEEEEecCCCeEEEeeeCC-CCceeEEE
Q 020448 86 VSPPAGFPDHPHRGFETVTYMLQGGITHQ----DFSG-------HKGTIHTGDVQWMTAGRGIVHSEMPAG-EGVQNGLQ 153 (326)
Q Consensus 86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H~----DS~G-------n~~~i~~GdvQwMtAGsGI~HsE~~~~-~~~~~~lQ 153 (326)
..|+..-+.|=|.|-.-+-.|++|+++.. +..+ ....+.+|++-++..-.|| |.=.|.+ +++.--|.
T Consensus 82 W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i-H~v~n~s~~~~avSLH 160 (175)
T PF05995_consen 82 WPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGI-HRVENPSGDEPAVSLH 160 (175)
T ss_dssp E-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBE-EEEEES-SSS-EEEEE
T ss_pred eCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCe-EEeccCCCCCCEEEEE
Confidence 46777889999999999999999998776 3331 1335678889998777664 8887765 66777777
Q ss_pred EEe
Q 020448 154 LWI 156 (326)
Q Consensus 154 LWi 156 (326)
+.-
T Consensus 161 vYs 163 (175)
T PF05995_consen 161 VYS 163 (175)
T ss_dssp EEE
T ss_pred EcC
Confidence 774
No 95
>PHA02283 hypothetical protein
Probab=36.59 E-value=1.6e+02 Score=26.51 Aligned_cols=75 Identities=13% Similarity=0.188 Sum_probs=47.9
Q ss_pred CCeEEEEEeecceEEcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeeccCCCceeee----CCcccCcHHHHH
Q 020448 227 TWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQY----GPFVMNSQAEID 302 (326)
Q Consensus 227 ~~~~~lyVl~G~~~i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~epi~~~----GpFVmnt~~ei~ 302 (326)
+.+.++|-. ..++.....+...+.++..+++.|-+...+. -+|.+.||+.. | ||....+.
T Consensus 47 g~ey~IYPv----~~d~~~~~~~~~dsPIiyTdgnnIfFVvrT~---------~DPYn~~vi~te~~kg---~dK~KQvL 110 (210)
T PHA02283 47 GEELFLYPV----QTDGKGTLNVMKKSPIAYTDGDNIHFVVNTV---------VDPYNHSFIRTEDIKG---LDKGKQLI 110 (210)
T ss_pred ccceEEEEE----EEcCCcceeeecCCCeEEeCCCeEEEEEecc---------cCccccchhhhhhhcc---cchhHHHH
Confidence 556778843 2222111344455556666777777665311 16777777654 5 89999999
Q ss_pred HHHHHHhccCCCCCC
Q 020448 303 QTIEDYQLCKNGFEN 317 (326)
Q Consensus 303 ~A~~dy~~g~~g~~~ 317 (326)
|||..|-+.+|-|..
T Consensus 111 QAFlAF~eD~F~fg~ 125 (210)
T PHA02283 111 QAFLAFVEDRFKFGV 125 (210)
T ss_pred HHHHHHHHhhhhhee
Confidence 999999999886643
No 96
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=35.97 E-value=1.7e+02 Score=29.86 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=39.9
Q ss_pred CCCCeEEEEEeecceEEcCcC-ceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe--eccCCCceeeeCCcccC
Q 020448 225 PETWNAFVYTIEGEGVFGTVN-SSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA--GQPLNEPVVQYGPFVMN 296 (326)
Q Consensus 225 p~~~~~~lyVl~G~~~i~g~~-~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~--G~pl~epi~~~GpFVmn 296 (326)
.++-.-.+|+-+|++.|.-+= .-.+.+||.++|..|-..+++-. .+++.+++. |.++.=| ..||+=.|
T Consensus 143 NaDGD~Li~~q~G~l~l~Te~G~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~E~~~~~~~lP--e~G~iG~n 213 (424)
T PF04209_consen 143 NADGDELIFPQQGSLRLETEFGRLDVRPGDYVVIPRGTRFRVELP--GPARGYIIENFGSHFRLP--ELGPIGAN 213 (424)
T ss_dssp ESSEEEEEEEEES-EEEEETTEEEEE-TTEEEEE-TT--EEEE-S--SSEEEEEEEEES--EE------GGGTTS
T ss_pred cCCCCEEEEEEECCEEEEecCeeEEEcCCeEEEECCeeEEEEEeC--CCceEEEEEcCCCeEEec--CcCccccC
Confidence 345567899999999985211 15789999999998888887764 589998887 5555434 44554333
No 97
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=33.26 E-value=32 Score=27.48 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeE
Q 020448 86 VSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIV 138 (326)
Q Consensus 86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~ 138 (326)
+.+++-|...--.+.+..-|+++|.+.-.+.. ..+.+|++-++..|..|.
T Consensus 6 l~~g~~~~~~~~~~~~~~iyv~~G~~~v~~~~---~~~~~~~~~~l~~g~~i~ 55 (104)
T PF05726_consen 6 LEPGASFTLPLPPGHNAFIYVLEGSVEVGGEE---DPLEAGQLVVLEDGDEIE 55 (104)
T ss_dssp E-TT-EEEEEEETT-EEEEEEEESEEEETTTT---EEEETTEEEEE-SECEEE
T ss_pred ECCCCEEEeecCCCCEEEEEEEECcEEECCCc---ceECCCcEEEECCCceEE
Confidence 34444443222467899999999998553332 579999988888665553
No 98
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=29.20 E-value=2e+02 Score=24.92 Aligned_cols=71 Identities=13% Similarity=0.272 Sum_probs=0.0
Q ss_pred EEEeecceEE--cCcCc--eeecCccEEEEcCCCe-EEEEecCCCCeEEEEEeeccCCCceeeeCCcccCcHHHHHHHHH
Q 020448 232 VYTIEGEGVF--GTVNS--SAVSAHNVLVLSLGDG-LSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIE 306 (326)
Q Consensus 232 lyVl~G~~~i--~g~~~--~~l~~~d~~~l~~g~~-l~i~a~~~~~a~~LL~~G~pl~epi~~~GpFVmnt~~ei~~A~~ 306 (326)
|-|++|.+.+ +|.++ ..+.+||.++|..|.. .++.+ .+.|.++++=|=.+. +-+-..-..++++|.+
T Consensus 68 l~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~rl~s----S~DF~VvGaYp~G~q----~diqtg~~t~~aear~ 139 (163)
T COG4297 68 LGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHCRLHS----SADFQVVGAYPPGQQ----ADIQTGAPTDLAEARA 139 (163)
T ss_pred EEEecceeEEEecCCCCceeeecCCCEEEEecCcccccccC----CCCeEEEcccCCccc----ccccCCCCccHHHHHH
Q ss_pred HHhc
Q 020448 307 DYQL 310 (326)
Q Consensus 307 dy~~ 310 (326)
+..+
T Consensus 140 ~I~~ 143 (163)
T COG4297 140 RIKS 143 (163)
T ss_pred HHHc
No 99
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=28.98 E-value=1.1e+02 Score=30.10 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=20.9
Q ss_pred EEeecccC--CCCCCCCCCCCCCceEEEEEee
Q 020448 79 LMLDEFSV--SPPAGFPDHPHRGFETVTYMLQ 108 (326)
Q Consensus 79 l~lD~~~~--~~~~GF~~HPHrG~EtvTyvl~ 108 (326)
+-++++-. .+...++.-||.++..+|++++
T Consensus 212 lRl~~YPp~p~~~~~~G~~~HtD~g~lTiL~Q 243 (358)
T PLN02254 212 LQLNSYPVCPDPDRAMGLAPHTDSSLLTILYQ 243 (358)
T ss_pred EEEecCCCCCCcccccCcCCccCCCcEEEEec
Confidence 34555532 2234577889999999999986
No 100
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=28.84 E-value=1.1e+02 Score=26.94 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=32.3
Q ss_pred CceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEe
Q 020448 99 GFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSE 141 (326)
Q Consensus 99 G~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE 141 (326)
+.+=+-|||+|++.-+=+ |..-+-+||||-+|.-|+-|.-+-
T Consensus 117 ~yDe~d~VlEGrL~V~~~-g~tv~a~aGDvifiPKgssIefst 158 (176)
T COG4766 117 NYDEIDYVLEGRLHVRID-GRTVIAGAGDVIFIPKGSSIEFST 158 (176)
T ss_pred cccceeEEEeeeEEEEEc-CCeEecCCCcEEEecCCCeEEEec
Confidence 344567899999866544 455778999999999999986653
No 101
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=28.35 E-value=1.5e+02 Score=27.26 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=26.6
Q ss_pred CeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeE
Q 020448 228 WNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGL 263 (326)
Q Consensus 228 ~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l 263 (326)
+--++||++|++.+ +|+ ...+.+||++.+..++.-
T Consensus 43 ~~ei~~v~~G~~~~~i~~~-~~~l~~g~l~~i~p~~~H 79 (278)
T PRK10296 43 YYEFTLVLTGRYYQEINGK-RVLLERGDFVFIPLGSHH 79 (278)
T ss_pred cEEEEEEEeceEEEEECCE-EEEECCCcEEEeCCCCcc
Confidence 34789999998655 552 267999999999877644
No 102
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=27.78 E-value=3.9e+02 Score=25.41 Aligned_cols=46 Identities=7% Similarity=0.086 Sum_probs=32.1
Q ss_pred CeEEEEEeecceEEcCc-CceeecCccEEEEcCCC-eEEEEecCCCCeEEEE
Q 020448 228 WNAFVYTIEGEGVFGTV-NSSAVSAHNVLVLSLGD-GLSAWNRSSKQLRFVL 277 (326)
Q Consensus 228 ~~~~lyVl~G~~~i~g~-~~~~l~~~d~~~l~~g~-~l~i~a~~~~~a~~LL 277 (326)
.-..+.|++|+++|... +...+++|+.+.+..+. .++|++ ++++|+
T Consensus 253 ~~~il~v~~G~~~i~~~~~~~~l~~G~~~~ipa~~~~~~i~g----~~~~~~ 300 (302)
T TIGR00218 253 SALILSVLEGSGRIKSGGKTLPLKKGESFFIPAHLGPFTIEG----ECEAIV 300 (302)
T ss_pred CcEEEEEEcceEEEEECCEEEEEecccEEEEccCCccEEEEe----eEEEEE
Confidence 34678899999998421 22569999999998654 688764 355554
No 103
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=27.35 E-value=2.6e+02 Score=28.85 Aligned_cols=54 Identities=15% Similarity=0.067 Sum_probs=31.3
Q ss_pred ceEEcCcC-ceeecCccEEEEc----CCCeEEEEecCCCCeEEEEEee----ccCCCc-eeeeCCccc
Q 020448 238 EGVFGTVN-SSAVSAHNVLVLS----LGDGLSAWNRSSKQLRFVLIAG----QPLNEP-VVQYGPFVM 295 (326)
Q Consensus 238 ~~~i~g~~-~~~l~~~d~~~l~----~g~~l~i~a~~~~~a~~LL~~G----~pl~ep-i~~~GpFVm 295 (326)
.+.|||+. .....++.-+.|. +|+.|+|+- +.++=+... +.-... -+.+||+|.
T Consensus 456 ~i~vNG~~~~~~~~~~gy~~i~r~W~~gD~v~l~l----pm~~r~~~~~~~~~~~~~~vAv~rGPlV~ 519 (520)
T PF07944_consen 456 TIRVNGEPVVDTAVPGGYLTIEREWKDGDVVELRL----PMEVRLEPANPRVPDDPGRVAVMRGPLVY 519 (520)
T ss_pred EEEECCEeCCCCcCCCCeEEEEeeccCCcEEEEEe----cCeeEEEeCCCCCccCCCeEEEEeCchhc
Confidence 35667632 2335577777776 578888875 233444444 111223 379999996
No 104
>PRK14113 urease accessory protein UreE; Provisional
Probab=26.16 E-value=2.7e+02 Score=24.16 Aligned_cols=32 Identities=6% Similarity=0.061 Sum_probs=21.5
Q ss_pred eeecCccEEEEcCCCeEEEEecCCCCeEEEEEeec
Q 020448 247 SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281 (326)
Q Consensus 247 ~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~ 281 (326)
..|..||.+..++|..|.|.+. +-.+|.+.++
T Consensus 49 ~~L~dGD~L~~ddg~~I~V~aa---~E~vl~i~~~ 80 (152)
T PRK14113 49 HPLLVGEILKTECGKIIQVKGK---AEDVATASAE 80 (152)
T ss_pred cccCCCCEEEcCCCCEEEEEEC---CccEEEEecC
Confidence 4567788888877777777773 3445555544
No 105
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=26.15 E-value=1.4e+02 Score=29.47 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=30.1
Q ss_pred eEEeecccC--CCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEec
Q 020448 78 FLMLDEFSV--SPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTA 133 (326)
Q Consensus 78 fl~lD~~~~--~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtA 133 (326)
++.++|+-. .+...++..||.+...+|++++ |..|+-++..+|+=+|+.+
T Consensus 196 ~lrl~~YP~~~~~~~~~G~~~HTD~g~lTlL~Q------d~v~GLQV~~~~~~~Wi~V 247 (358)
T PLN02515 196 KVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQ------DQVGGLQATRDGGKTWITV 247 (358)
T ss_pred eEEEeecCCCCChhhccCCCCCCCCCeEEEEec------CCCCceEEEECCCCeEEEC
Confidence 445555533 2224577889999999999986 2344444444444355554
No 106
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=25.86 E-value=5.3e+02 Score=23.75 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=38.9
Q ss_pred EEEECCCCeEEEecCC--CCeEEEEEeecceEE--cCcCc----eeecCccEEEEcCCCe-EEEEecCCCCeEEEEEeec
Q 020448 211 DFTLKPRAQIHQSIPE--TWNAFVYTIEGEGVF--GTVNS----SAVSAHNVLVLSLGDG-LSAWNRSSKQLRFVLIAGQ 281 (326)
Q Consensus 211 di~L~~g~~~~~~~p~--~~~~~lyVl~G~~~i--~g~~~----~~l~~~d~~~l~~g~~-l~i~a~~~~~a~~LL~~G~ 281 (326)
.+.+.+|+.-+.-..+ ++.-+.||++|+... ...++ ..+++||.+.+..+-. .++ +.++++..|+.+--+
T Consensus 84 e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~-N~Gd~pLvf~~v~~~ 162 (209)
T COG2140 84 EVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTI-NTGDEPLVFLNVYPA 162 (209)
T ss_pred EEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEee-cCCCCCEEEEEEEeC
Confidence 3456666444433333 333499999998765 21111 3577899998875422 333 233455555555444
Q ss_pred c
Q 020448 282 P 282 (326)
Q Consensus 282 p 282 (326)
.
T Consensus 163 ~ 163 (209)
T COG2140 163 D 163 (209)
T ss_pred C
Confidence 4
No 107
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=25.62 E-value=1.4e+02 Score=28.15 Aligned_cols=47 Identities=6% Similarity=0.135 Sum_probs=34.5
Q ss_pred ecceEEcCcCceeecCccEEEEcC-CCeEEEEec-CCCCeEEEEEeeccC
Q 020448 236 EGEGVFGTVNSSAVSAHNVLVLSL-GDGLSAWNR-SSKQLRFVLIAGQPL 283 (326)
Q Consensus 236 ~G~~~i~g~~~~~l~~~d~~~l~~-g~~l~i~a~-~~~~a~~LL~~G~pl 283 (326)
.|.+.++|.. ..|..+|++.+.- ...++|.+. +..+|+|-+.+...+
T Consensus 86 ~G~i~v~g~~-y~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~~sapAH 134 (278)
T COG3717 86 PGTITVDGQE-YELGHRDALYVGMGAKDVTFSSIDGAAPAKFYYVSAPAH 134 (278)
T ss_pred CceEEECCEE-EEeccccEEEEecCccceEEeccCCCCcceEEEeecccc
Confidence 4677788733 6899999999984 477888764 124578999987654
No 108
>PRK13502 transcriptional activator RhaR; Provisional
Probab=24.91 E-value=2e+02 Score=26.49 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=28.6
Q ss_pred CeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEe
Q 020448 228 WNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWN 267 (326)
Q Consensus 228 ~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a 267 (326)
+.-++||.+|++.+ +++ ...+.+||++.+..++.-.+..
T Consensus 38 ~~~l~~v~~G~~~~~i~~~-~~~l~~g~l~li~~~~~H~~~~ 78 (282)
T PRK13502 38 FCELVMVWRGNGLHVLNER-PYRITRGDLFYIRAEDKHSYTS 78 (282)
T ss_pred eEEEEEEecCcEEEEECCE-EEeecCCcEEEECCCCcccccc
Confidence 45789999998665 452 2679999999998776544444
No 109
>PRK11507 ribosome-associated protein; Provisional
Probab=24.88 E-value=53 Score=24.95 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=24.5
Q ss_pred CCeEEEEEeecceEEcCcC----ceeecCccEEEEcCCCeEEE
Q 020448 227 TWNAFVYTIEGEGVFGTVN----SSAVSAHNVLVLSLGDGLSA 265 (326)
Q Consensus 227 ~~~~~lyVl~G~~~i~g~~----~~~l~~~d~~~l~~g~~l~i 265 (326)
|-.+=.++.+|.+.|||+. +..|.+||.+.+++ ..+.+
T Consensus 27 GG~AK~~I~eg~V~VNGeve~rRgkKl~~GD~V~~~g-~~~~v 68 (70)
T PRK11507 27 GAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG-HSVQV 68 (70)
T ss_pred hHHHHHHHHcCceEECCEEecccCCCCCCCCEEEECC-EEEEE
Confidence 3344456778888888742 25688888888853 44443
No 110
>PRK13500 transcriptional activator RhaR; Provisional
Probab=24.24 E-value=1.6e+02 Score=27.90 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=28.8
Q ss_pred CeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEe
Q 020448 228 WNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWN 267 (326)
Q Consensus 228 ~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a 267 (326)
+.-.+||.+|++.+ +|. ...+.+||++.+..++.-.+..
T Consensus 68 ~~el~~v~~G~g~~~v~~~-~~~l~~Gdl~~I~~~~~H~~~~ 108 (312)
T PRK13500 68 FCELVIVWRGNGLHVLNDR-PYRITRGDLFYIHADDKHSYAS 108 (312)
T ss_pred eEEEEEEEcCeEEEEECCE-EEeecCCeEEEECCCCeecccc
Confidence 34789999987765 552 2679999999999776655554
No 111
>PRK15222 putative pilin structural protein SafD; Provisional
Probab=23.96 E-value=5e+02 Score=22.80 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=31.2
Q ss_pred CCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCCCCCCCCCcccc
Q 020448 95 HPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEI 172 (326)
Q Consensus 95 HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~~k~~~P~Y~~~ 172 (326)
-|.-.+..+.++..|.+. +...|.-|.+. ..+.=-||++|.|+++. .+ .|.+.-+
T Consensus 33 k~q~~~~~~~gl~~g~l~------DG~~latGrI~---------------~~g~htGF~Vwsna~q~-gg-~p~~Yil 87 (156)
T PRK15222 33 KLQTTLRVGAYFRAGHVP------DGMVLAQGWVT---------------YHGSHSGFRVWSDEQKA-GN-TPTVLLL 87 (156)
T ss_pred ccceeeeeccceeecccC------CCcEEEEEEEE---------------eCCCceeEEEEeccccc-CC-CccEEEE
Confidence 455556666777777652 33345555432 12233589999998764 43 4544433
No 112
>PRK13501 transcriptional activator RhaR; Provisional
Probab=23.49 E-value=1.5e+02 Score=27.61 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=27.7
Q ss_pred CeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEE
Q 020448 228 WNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAW 266 (326)
Q Consensus 228 ~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~ 266 (326)
+--++|+++|++.+ ||. ...+.+||++.+..+..-.+.
T Consensus 38 ~~ei~~i~~G~~~~~i~~~-~~~l~~g~~~~I~p~~~H~~~ 77 (290)
T PRK13501 38 FCEIVIVWRGNGLHVLNDH-PYRITCGDVFYIQAADHHSYE 77 (290)
T ss_pred ceeEEEEecCceEEEECCe-eeeecCCeEEEEcCCCccccc
Confidence 45788999998665 552 267999999999876654444
No 113
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=23.23 E-value=1.6e+02 Score=27.04 Aligned_cols=38 Identities=11% Similarity=-0.032 Sum_probs=28.2
Q ss_pred eEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEe
Q 020448 229 NAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWN 267 (326)
Q Consensus 229 ~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a 267 (326)
--++|+.+|.+.+ ++. ...+++||++.+..+..-.+..
T Consensus 45 ~~l~~~~~G~~~~~~~~~-~~~l~~g~~~ii~~~~~H~~~~ 84 (287)
T TIGR02297 45 YQLHYLTEGSIALQLDEH-EYSEYAPCFFLTPPSVPHGFVT 84 (287)
T ss_pred eeEEEEeeCceEEEECCE-EEEecCCeEEEeCCCCcccccc
Confidence 4688999998776 442 2679999999999776555543
No 114
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=22.91 E-value=2.6e+02 Score=25.97 Aligned_cols=40 Identities=10% Similarity=0.217 Sum_probs=28.6
Q ss_pred CCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEe
Q 020448 227 TWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWN 267 (326)
Q Consensus 227 ~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a 267 (326)
+...++++++|...+ +|. ...+.+||++.++.+....+..
T Consensus 70 ~~~~l~~~~~G~~~~~~~g~-~~~l~~G~~~l~~~~~p~~~~~ 111 (302)
T PRK09685 70 AHFFTVFQLSGHAIIEQDDR-QVQLAAGDITLIDASRPCSIYP 111 (302)
T ss_pred CcEEEEEEecceEEEEECCe-EEEEcCCCEEEEECCCCcEeec
Confidence 334566788998877 442 2679999999998776666654
No 115
>PRK14112 urease accessory protein UreE; Provisional
Probab=22.83 E-value=4e+02 Score=23.06 Aligned_cols=32 Identities=6% Similarity=-0.040 Sum_probs=23.3
Q ss_pred eeecCccEEEEcCCCeEEEEecCCCCeEEEEEeec
Q 020448 247 SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281 (326)
Q Consensus 247 ~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~ 281 (326)
..|..||.+..+++..+.|.+. +..++.+.++
T Consensus 55 ~~L~dGDvL~~ddg~~I~V~a~---~e~vl~I~~~ 86 (149)
T PRK14112 55 KKLMDGDILYKDDYKLVVIRLE---LSDVLIITAH 86 (149)
T ss_pred CccCCCCEEEeCCCCEEEEEeC---CCcEEEEeCC
Confidence 4577889888888888888773 4556666655
No 116
>PLN02997 flavonol synthase
Probab=22.06 E-value=1.8e+02 Score=28.16 Aligned_cols=30 Identities=7% Similarity=0.199 Sum_probs=20.7
Q ss_pred EEeecccCC--CCCCCCCCCCCCceEEEEEee
Q 020448 79 LMLDEFSVS--PPAGFPDHPHRGFETVTYMLQ 108 (326)
Q Consensus 79 l~lD~~~~~--~~~GF~~HPHrG~EtvTyvl~ 108 (326)
+-++++-.. +...++..||.++-++|++++
T Consensus 185 lRl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Q 216 (325)
T PLN02997 185 LRVNFYPPTQDTELVIGAAAHSDMGAIALLIP 216 (325)
T ss_pred eeeecCCCCCCcccccCccCccCCCceEEEec
Confidence 444554332 223578899999999999975
No 117
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=22.06 E-value=1.9e+02 Score=20.87 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=25.6
Q ss_pred cEEEEEEECCCCeEEEecCCCC-eEEEEEeecc
Q 020448 207 TMFLDFTLKPRAQIHQSIPETW-NAFVYTIEGE 238 (326)
Q Consensus 207 ~~~~di~L~~g~~~~~~~p~~~-~~~lyVl~G~ 238 (326)
..++.+.+++|.++++.+.... +..+|++..+
T Consensus 2 ~D~y~f~v~ag~~l~i~l~~~~~d~dl~l~~~~ 34 (70)
T PF04151_consen 2 VDYYSFTVPAGGTLTIDLSGGSGDADLYLYDSN 34 (70)
T ss_dssp EEEEEEEESTTEEEEEEECETTSSEEEEEEETT
T ss_pred cEEEEEEEcCCCEEEEEEcCCCCCeEEEEEcCC
Confidence 4678889999999999987655 6778888766
No 118
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=21.77 E-value=2.1e+02 Score=27.84 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=21.4
Q ss_pred eEEeecccCC--CCCCCCCCCCCCceEEEEEee
Q 020448 78 FLMLDEFSVS--PPAGFPDHPHRGFETVTYMLQ 108 (326)
Q Consensus 78 fl~lD~~~~~--~~~GF~~HPHrG~EtvTyvl~ 108 (326)
.+-++|+-.. +...++..+|.++..+|++++
T Consensus 194 ~lR~~~YPp~~~~~~~~g~~~HtD~g~lTlL~q 226 (345)
T PLN02750 194 FARFNHYPPCPAPHLALGVGRHKDGGALTVLAQ 226 (345)
T ss_pred EEEEEecCCCCCcccccCcCCCCCCCeEEEEec
Confidence 3445555332 223577889999999999977
No 119
>PF03451 HELP: HELP motif; InterPro: IPR005108 The HELP (Hydrophobic ELP) domain is found in EMAP and EMAP-like proteins (ELPs) [, ]. Although called a domain it contains a predicted transmembrane helix and may not form a globular domain. It is also not clear if these proteins localize to membranes.
Probab=21.18 E-value=75 Score=24.54 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=24.6
Q ss_pred ecCCCCeeeeeCCcEEEEecCCCeEEE
Q 020448 114 QDFSGHKGTIHTGDVQWMTAGRGIVHS 140 (326)
Q Consensus 114 ~DS~Gn~~~i~~GdvQwMtAGsGI~Hs 140 (326)
+|+.+|--.+..|++-+.+|+-||++.
T Consensus 49 ~d~R~Nl~y~~~geivY~~AavgVvyd 75 (77)
T PF03451_consen 49 HDCRNNLFYNATGEIVYFTAAVGVVYD 75 (77)
T ss_pred ccccccEEECCCCCEEEEeceEEEEEc
Confidence 688889888999999999999999975
No 120
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=20.55 E-value=2.2e+02 Score=27.65 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=21.1
Q ss_pred eEEeecccCC--CCCCCCCCCCCCceEEEEEee
Q 020448 78 FLMLDEFSVS--PPAGFPDHPHRGFETVTYMLQ 108 (326)
Q Consensus 78 fl~lD~~~~~--~~~GF~~HPHrG~EtvTyvl~ 108 (326)
.+-++|+-.. +...++..+|.++-.+|++++
T Consensus 191 ~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~q 223 (337)
T PLN02639 191 HMAVNYYPPCPEPELTYGLPAHTDPNALTILLQ 223 (337)
T ss_pred EEEEEcCCCCCCcccccCCCCCcCCCceEEEEe
Confidence 4445555332 223577889999999999975
No 121
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=20.38 E-value=4.3e+02 Score=24.24 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=20.5
Q ss_pred eeecCccEEEEcCCCeEEEEecCCCCeEEEEEee
Q 020448 247 SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAG 280 (326)
Q Consensus 247 ~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G 280 (326)
..|..||.+..+++..|.|.+. +-.+|.+..
T Consensus 55 ~~L~dGDvL~~ddg~~IvV~aa---pE~Vl~I~~ 85 (206)
T PRK13263 55 TVLRDGDVLVAEDGALVRVAAA---PEAVLRVRA 85 (206)
T ss_pred CccCCCCEEEeCCCCEEEEEeC---CCcEEEEEC
Confidence 4567778887777777777763 345555554
No 122
>PRK13261 ureE urease accessory protein UreE; Provisional
Probab=20.10 E-value=5e+02 Score=22.43 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=20.7
Q ss_pred eeecCccEEEEcCCCeEEEEecCCCCeEEEEEeec
Q 020448 247 SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281 (326)
Q Consensus 247 ~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~ 281 (326)
..|..||.+..+++..+.|.+. +..+|.+..+
T Consensus 54 ~~L~dGDvL~~d~~~~i~V~~~---~e~vl~i~~~ 85 (159)
T PRK13261 54 TVLRDGDVLFLDDGRVIVVRAA---PEDVLVVRPR 85 (159)
T ss_pred CccCCCCEEEeCCCCEEEEEEC---CCcEEEEECC
Confidence 4567778777777777777763 4455666543
Done!