BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020449
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/300 (44%), Positives = 173/300 (57%), Gaps = 6/300 (2%)
Query: 31 FYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQS-PNGDAEK 89
FY+++CP ES+V + V+ F+ P +R+ FHDCF+ GCDASVL+ S N AEK
Sbjct: 6 FYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEK 65
Query: 90 DA-PDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGR 148
DA P+N SL GF+ + AK AVEA CP VSCADILA AARD LAG + V GR
Sbjct: 66 DAIPNNPSL--RGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGR 123
Query: 149 RDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQIDMIALSGAHTLGFSHCDRFANRI 208
RDG VS AS +P P FN +L FA L+ +M+ LSGAH++G +HC F NR+
Sbjct: 124 RDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNRL 183
Query: 209 YXXXXXXXXXXXXXXAYAQQLMQSCPRNVD--PQIAINMDPVTPRTFDNMYYQNLVAGKG 266
Y +YA L +CP N I +++D +TP DNMYY + G
Sbjct: 184 YNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLTLG 243
Query: 267 LFTSDQVLFTDASSQPTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRRDCTAFN 326
L TSDQ L T+A+ V A N + + FA AM K+G++ V TG QGEIR +C+ N
Sbjct: 244 LLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVN 303
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 126/306 (41%), Positives = 164/306 (53%), Gaps = 19/306 (6%)
Query: 27 LVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQ-SPNG 85
L NFY++ CPN S + V++ ++ + LRL FHDCF+ GCDASVL+ + N
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 86 DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVE 145
EK A N + + GF+ + K VE+ CPGVVSCADILA+AARD VV GGA ++V
Sbjct: 62 TGEKTAGPNAN-SIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVL 120
Query: 146 LGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQIDMIALSGAHTLGFSHCDRFA 205
LGRRD + SS +LP P FNL L F+ G + +++ LSGAHT+G + C F
Sbjct: 121 LGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFR 180
Query: 206 NRIYXXXXXXXXXXXXXXAYAQQLMQSCPR-----NVDPQIAINMDPVTPRTFDNMYYQN 260
RIY YA+ L +CP N+ P D TP FDN YY N
Sbjct: 181 TRIY-------NESNIDPTYAKSLQANCPSVGGDTNLSP-----FDVTTPNKFDNAYYIN 228
Query: 261 LVAGKGLFTSDQVLFTDASSQPTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRR 320
L KGL SDQ LF S+ V ++ N FN F AM K+G + TG G+IR
Sbjct: 229 LRNKKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRT 288
Query: 321 DCTAFN 326
+C N
Sbjct: 289 NCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 211 bits (537), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/304 (39%), Positives = 162/304 (53%), Gaps = 4/304 (1%)
Query: 26 QLVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPNG 85
QL FYS TCPN +IV + + +RL FHDCF+ GCDAS+L+
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 86 -DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSV 144
+EK+A N++ A GF+ V K A+E CPGVVSC+D+LA+A+ V LAGG ++V
Sbjct: 62 IQSEKNAGPNVNSA-RGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTV 120
Query: 145 ELGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQIDMIALSGAHTLGFSHCDRF 204
LGRRD L + + ++P P +L + F+ GL+ D++ALSGAHT G + C F
Sbjct: 121 LLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVF 180
Query: 205 ANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVAG 264
NR++ L Q CP+N N+D TP FDN Y+ NL +
Sbjct: 181 NNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSN 240
Query: 265 KGLFTSDQVLF--TDASSQPTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRRDC 322
GL SDQ LF T +S+ V FA N F AFA +M +G + TG+ GEIR DC
Sbjct: 241 DGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDC 300
Query: 323 TAFN 326
N
Sbjct: 301 KKVN 304
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 129/305 (42%), Positives = 167/305 (54%), Gaps = 6/305 (1%)
Query: 26 QLVENFYSSTCPNVESIVNRVV-STKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPN 84
QL FY TCPN+ IV V+ F+ I + +RL FHDCF+ GCD SVL+ + +
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGA-SLMRLHFHDCFVQGCDGSVLLNNTD 59
Query: 85 G-DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFS 143
++E+DA N++ + G D V K AVE CP VSCADILAIAA VL GG +
Sbjct: 60 TIESEQDALPNIN-SIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWP 118
Query: 144 VELGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQIDMIALSGAHTLGFSHCDR 203
V LGRRD L + + NLP P FNL +L FA GL+ +D++ LSG HT G + C
Sbjct: 119 VPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCST 178
Query: 204 FANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVA 263
F NR+Y Y + L CP+N N+D TP FDN YY NL+
Sbjct: 179 FINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQ 238
Query: 264 GKGLFTSDQVLFTD--ASSQPTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRRD 321
GL SDQ LF+ A + P VN F+ N F + F +M K+G +GV TG++GEIR
Sbjct: 239 LNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQ 298
Query: 322 CTAFN 326
C N
Sbjct: 299 CNFVN 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 171/300 (57%), Gaps = 9/300 (3%)
Query: 30 NFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQ-SPNGDAE 88
+FY TCP ESIV V + LRL FHDCF+ GCDASVL+ S G E
Sbjct: 12 DFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGE 71
Query: 89 KDAPDNLSLAGDGFDTVVQAKQAVEAQCPG-VVSCADILAIAARDVVVLAGGAPFSVELG 147
+ AP NL+L F V + +E +C G VVSC+DILA+AARD VV++GG + V LG
Sbjct: 72 QQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRVPLG 131
Query: 148 RRDGL-VSRASSVKGNLPEPTFNLDELNQMFAKHGLSQIDMIALSGAHTLGFSHCDRFAN 206
RRD + V +LP P+ N+ L + + GL D++ +SG HT+G +HC F +
Sbjct: 132 RRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSSFED 191
Query: 207 RIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVAGKG 266
R++ + +L ++CP + + +D TP FDN YY +LV +G
Sbjct: 192 RLFPRPDPTISP-----TFLSRLKRTCPAKGTDRRTV-LDVRTPNVFDNKYYIDLVNREG 245
Query: 267 LFTSDQVLFTDASSQPTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRRDCTAFN 326
LF SDQ LFT+A ++P V FA++ DF F ++ K+G++ V+T +QGE+RR+C+ N
Sbjct: 246 LFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNCSVRN 305
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 207 bits (527), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 167/305 (54%), Gaps = 4/305 (1%)
Query: 25 GQLVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPN 84
G L FY+ TCPN ++V +V F + +RL FHDCF++GCDAS+L+ +
Sbjct: 2 GSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSG 61
Query: 85 GD-AEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFS 143
+EK+A N + A GF+ V K A+E CPGVVSC D+LA+A++ V L+GG ++
Sbjct: 62 SIISEKNAGPNANSA-RGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWT 120
Query: 144 VELGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQIDMIALSGAHTLGFSHCDR 203
V+LGRRD L + + ++P PT L + F+ GL+ D++ALSGAHT G + C
Sbjct: 121 VDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGV 180
Query: 204 FANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVA 263
F+NR++ L + CP+ + N+D TP FDN Y+ NL +
Sbjct: 181 FSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQS 240
Query: 264 GKGLFTSDQVLF--TDASSQPTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRRD 321
GL SDQ LF T +++ V FA N F AFA +M +G + TG+ GEIR D
Sbjct: 241 NNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLD 300
Query: 322 CTAFN 326
C N
Sbjct: 301 CKKTN 305
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 207 bits (526), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 122/306 (39%), Positives = 161/306 (52%), Gaps = 6/306 (1%)
Query: 26 QLVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPNG 85
QL FY ++CPNV +IV + + + LRL FHDCF+ GCDAS+L+ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 86 -DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSV 144
EKDA N + + GF + + K AVE+ CP VSCAD+L IAA+ V LAGG + V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 145 ELGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQ-IDMIALSGAHTLGFSHCDR 203
LGRRD L + NLP P F L +L F GL++ D++ALSG HT G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 204 FANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVA 263
+R+Y Y Q L CP N + ++MD TP FDN YY NL
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEE 240
Query: 264 GKGLFTSDQVLFTDASSQ---PTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRR 320
KGL SDQ LF+ ++ P V FA + F AF AM ++G + TG QG+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 321 DCTAFN 326
+C N
Sbjct: 301 NCRVVN 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 206 bits (524), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 161/306 (52%), Gaps = 6/306 (1%)
Query: 26 QLVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPNG 85
QL FY ++CPNV +IV + + + LRL FHDCF+ GCDAS+L+ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 86 -DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSV 144
EKDA N + + GF + + K AVE+ CP VSCAD+L IAA+ V LAGG + V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 145 ELGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQ-IDMIALSGAHTLGFSHCDR 203
LGRRD L + NLP+P F L +L F GL++ D++ALSG HT G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 204 FANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVA 263
+R+Y Y Q L CP N + ++ D TP FDN YY NL
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 264 GKGLFTSDQVLFTDASSQ---PTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRR 320
KGL SDQ LF+ ++ P V FA + F AF AM ++G + TG QG+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 321 DCTAFN 326
+C N
Sbjct: 301 NCRVVN 306
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/305 (39%), Positives = 169/305 (55%), Gaps = 10/305 (3%)
Query: 26 QLVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPNG 85
QL + Y+ +CPN+ IV + V+ + +RL FHDCF+ GCDAS+L+
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDG--A 58
Query: 86 DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVE 145
D+EK A N++ A GF+ + K AVE CPGVVSCADIL +AARD VVL+GG + V
Sbjct: 59 DSEKLAIPNINSA-RGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVA 117
Query: 146 LGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQIDMIALSGAHTLGFSHCDRFA 205
LGR+DGLV+ +S NLP P LD + F L+ D++ALSGAHT G + C F+
Sbjct: 118 LGRKDGLVANQNSAN-NLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFS 176
Query: 206 NRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVAGK 265
NR++ + L CP + I +D T TFDN Y++NL+ GK
Sbjct: 177 NRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGK 236
Query: 266 GLFTSDQVLFTD----ASSQPTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRRD 321
GL +SDQ+LF+ +++ V ++R+ F F AM ++G + G GE+R +
Sbjct: 237 GLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGN--ISNGASGEVRTN 294
Query: 322 CTAFN 326
C N
Sbjct: 295 CRVIN 299
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 160/306 (52%), Gaps = 6/306 (1%)
Query: 26 QLVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPNG 85
QL FY ++CPNV +IV + + + LRL FHDCF+ GCDAS+L+ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 86 -DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSV 144
EKDA N + + GF + + K AVE+ CP VSCAD+L IAA+ V LAGG + V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 145 ELGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQ-IDMIALSGAHTLGFSHCDR 203
LGRRD L + NLP P F L +L F GL++ D++ALSG HT G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRS 180
Query: 204 FANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVA 263
+R+Y Y Q L CP N + ++ D TP FDN YY NL
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 264 GKGLFTSDQVLFTDASSQ---PTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRR 320
KGL SDQ LF+ ++ P V FA + F AF AM ++G + TG QG+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 321 DCTAFN 326
+C N
Sbjct: 301 NCRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 160/306 (52%), Gaps = 6/306 (1%)
Query: 26 QLVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPNG 85
QL FY ++CPNV +IV + + + LRL FHDCF+ GCDAS+L+ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 86 -DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSV 144
EKDA N + + GF + + K AVE+ CP VSCAD+L IAA+ V LAGG + V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 145 ELGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQ-IDMIALSGAHTLGFSHCDR 203
LGRRD L + NLP P F L +L F GL++ D++ALSG HT G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 204 FANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVA 263
+R+Y Y Q L CP N + ++ D TP FDN YY NL
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 264 GKGLFTSDQVLFTDASSQ---PTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRR 320
KGL SDQ LF+ ++ P V FA + F AF AM ++G + TG QG+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 321 DCTAFN 326
+C N
Sbjct: 300 NCRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 160/306 (52%), Gaps = 6/306 (1%)
Query: 26 QLVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPNG 85
QL FY ++CPNV +IV + + + LRL FHDCF+ GCDAS+L+ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 86 -DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSV 144
EKDA N + + GF + + K AVE+ CP VSCAD+L IAA+ V LAGG + V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 145 ELGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQ-IDMIALSGAHTLGFSHCDR 203
LGRRD L + NLP P F L +L F GL++ D++ALSG HT G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 204 FANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVA 263
+R+Y Y Q L CP N + ++ D TP FDN YY NL
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 264 GKGLFTSDQVLFTDASSQ---PTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRR 320
KGL SDQ LF+ ++ P V FA + F AF AM ++G + TG QG+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 321 DCTAFN 326
+C N
Sbjct: 301 NCRVVN 306
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 160/306 (52%), Gaps = 6/306 (1%)
Query: 26 QLVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPNG 85
QL FY ++CPNV +IV + + + LRL FHDCF+ GCDAS+L+ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 86 -DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSV 144
EKDA N + + GF + + K AVE+ CP VSCAD+L IAA+ V LAGG + V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 145 ELGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQ-IDMIALSGAHTLGFSHCDR 203
LGRRD L + NLP P F L +L F GL++ D++ALSG HT G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 204 FANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVA 263
+R+Y Y Q L CP N + ++ D TP FDN YY NL
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 264 GKGLFTSDQVLFTDASSQ---PTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRR 320
KGL SDQ LF+ ++ P V FA + F AF AM ++G + TG QG+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 321 DCTAFN 326
+C N
Sbjct: 300 NCRVVN 305
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 160/306 (52%), Gaps = 6/306 (1%)
Query: 26 QLVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPNG 85
QL FY ++CPNV +IV + + + LRL FHDCF+ GCDAS+L+ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 86 -DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSV 144
EKDA N + + GF + + K AVE+ CP VSCAD+L IAA+ V LAGG + V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 145 ELGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQ-IDMIALSGAHTLGFSHCDR 203
LGRRD L + NLP P F L +L F GL++ D++ALSG HT G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 204 FANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVA 263
+R+Y Y Q L CP N + ++ D TP FDN YY NL
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 264 GKGLFTSDQVLFTDASSQ---PTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRR 320
KGL SDQ LF+ ++ P V FA + F AF AM ++G + TG QG+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 321 DCTAFN 326
+C N
Sbjct: 300 NCRVVN 305
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 160/306 (52%), Gaps = 6/306 (1%)
Query: 26 QLVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPNG 85
QL FY ++CPNV +IV + + + LRL FHDCF+ GCDAS+L+ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 86 -DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSV 144
EKDA N + + GF + + K AVE+ CP VSCAD+L IAA+ V LAGG + V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 145 ELGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQ-IDMIALSGAHTLGFSHCDR 203
LGRRD L + NLP P F L +L F GL++ D++ALSG HT G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 204 FANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVA 263
+R+Y Y Q L CP N + ++ D TP FDN YY NL
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 264 GKGLFTSDQVLFTDASSQ---PTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRR 320
KGL SDQ LF+ ++ P V FA + F AF AM ++G + TG QG+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 321 DCTAFN 326
+C N
Sbjct: 301 NCRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 204 bits (518), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 160/306 (52%), Gaps = 6/306 (1%)
Query: 26 QLVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPNG 85
QL FY ++CPNV +IV + + + LRL FHDCF+ GCDAS+L+ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 86 -DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSV 144
EKDA N + + GF + + K AVE+ CP VSCAD+L IAA+ V LAGG + V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 145 ELGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQ-IDMIALSGAHTLGFSHCDR 203
LGRRD L + NLP P F L +L F GL++ D++ALSG H+ G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRF 179
Query: 204 FANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVA 263
+R+Y Y Q L CP N + ++ D TP FDN YY NL
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 264 GKGLFTSDQVLFTDASSQ---PTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRR 320
KGL SDQ LF+ ++ P V FA + F AF AM ++G + TG QG+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 321 DCTAFN 326
+C N
Sbjct: 300 NCRVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 159/306 (51%), Gaps = 6/306 (1%)
Query: 26 QLVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPNG 85
QL FY ++CPNV +IV + + + LRL FHDCF+ GCDAS+L+ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 86 -DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSV 144
EKDA N + + GF + + K AVE+ CP VSCAD+L IAA+ V LAGG + V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 145 ELGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQ-IDMIALSGAHTLGFSHCDR 203
LGRRD L + NLP P F L +L F GL++ D++AL G HT G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRF 179
Query: 204 FANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVA 263
+R+Y Y Q L CP N + ++ D TP FDN YY NL
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 264 GKGLFTSDQVLFTDASSQ---PTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRR 320
KGL SDQ LF+ ++ P V FA + F AF AM ++G + TG QG+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 321 DCTAFN 326
+C N
Sbjct: 300 NCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 159/306 (51%), Gaps = 6/306 (1%)
Query: 26 QLVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPNG 85
QL FY ++CPNV +IV + + + LRL F DCF+ GCDAS+L+ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 86 -DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSV 144
EKDA N + + GF + + K AVE+ CP VSCAD+L IAA+ V LAGG + V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 145 ELGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQ-IDMIALSGAHTLGFSHCDR 203
LGRRD L + NLP P F L +L F GL++ D++ALSG HT G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 204 FANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVA 263
+R+Y Y Q L CP N + ++ D TP FDN YY NL
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 264 GKGLFTSDQVLFTDASSQ---PTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRR 320
KGL SDQ LF+ ++ P V FA + F AF AM ++G + TG QG+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 321 DCTAFN 326
+C N
Sbjct: 301 NCRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 158/306 (51%), Gaps = 6/306 (1%)
Query: 26 QLVENFYSSTCPNVESIVNRVVSTKFSQTFITVPATLRLFFHDCFIVGCDASVLIQSPNG 85
QL FY ++CPNV +IV + + + L L F DCF+ GCDAS+L+ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 86 -DAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSV 144
EKDA N + + GF + + K AVE+ CP VSCAD+L IAA+ V LAGG + V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 145 ELGRRDGLVSRASSVKGNLPEPTFNLDELNQMFAKHGLSQ-IDMIALSGAHTLGFSHCDR 203
LGRRD L + NLP P F L +L F GL++ D++ALSG HT G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 204 FANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVA 263
+R+Y Y Q L CP N + ++ D TP FDN YY NL
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 264 GKGLFTSDQVLFTDASSQ---PTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQGEIRR 320
KGL SDQ LF+ ++ P V FA + F AF AM ++G + TG QG+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 321 DCTAFN 326
+C N
Sbjct: 300 NCRVVN 305
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 116/287 (40%), Gaps = 54/287 (18%)
Query: 32 YSSTCPNVESIVNRVVSTKFSQTFIT----VPATLRLFFHDCFIVGCDASVLIQSPNGDA 87
Y + P+ + + + + + + FI P LRL +H D+ P G
Sbjct: 4 YPTVSPDYQKAIEK--AKRKLRGFIAEKKCAPLILRLAWHSAGTF--DSKTKTGGPFGTI 59
Query: 88 EKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELG 147
+ A + A +G D V+ + ++ Q P +VS AD +A V + GG G
Sbjct: 60 KHQA-ELAHGANNGLDIAVRLLEPIKEQFP-IVSYADFYQLAGVVAVEITGGPEVPFHPG 117
Query: 148 RRDGLVSRASSVKGNLPEPTFNLDELNQMFAKH-GLSQIDMIALSGAHTLGFSHCDRFAN 206
R D +G LP+ T D L +F K GLS D++ALSG HT+G +H +R
Sbjct: 118 RED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGF 174
Query: 207 RIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVAGK- 265
P +P I FDN Y+ L+ G+
Sbjct: 175 E-------------------------GPWTSNPLI-----------FDNSYFTELLTGEK 198
Query: 266 -GL--FTSDQVLFTDASSQPTVNDFARNPLDFNAAFATAMRKLGRVG 309
GL SD+ L TD+ +P V +A + F A +A A KL +G
Sbjct: 199 DGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELG 245
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 34 STCPNVESIVNRVV--STKFSQTFIT----VPATLRLFFHDCFIVGCDASVLIQSPNGDA 87
+ P V + + V + K + FI P LRL +H D P G
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTF--DKGTKTGGPFGTI 71
Query: 88 EKDAPDNLSLAGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELG 147
+ A + A +G D V+ + ++A+ P ++S AD +A V + GG G
Sbjct: 72 KHPA-ELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPG 129
Query: 148 RRDGLVSRASSVKGNLPEPTFNLDELNQMFAKH-GLSQIDMIALSGAHTLGFSHCDRFAN 206
R D +G LP+ T D L +F K GL+ D++ALSG HT+G +H +R
Sbjct: 130 RED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGF 186
Query: 207 RIYXXXXXXXXXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVAG-- 264
P +P I FDN Y+ L++G
Sbjct: 187 E-------------------------GPWTSNPLI-----------FDNSYFTELLSGEK 210
Query: 265 KGL--FTSDQVLFTDASSQPTVNDFARNPLDFNAAFATAMRKLGRVGVKTGNQ 315
+GL SD+ L +D +P V+ +A + F A +A A +KL +G ++
Sbjct: 211 EGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFADAHE 263
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 106/257 (41%), Gaps = 48/257 (18%)
Query: 58 VPATLRLFFHDCFIVGCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCP 117
P LRL +H D P G + A + A +G D V+ + ++A+ P
Sbjct: 44 APLMLRLAWHSAGTF--DKGTKTGGPFGTIKHPA-ELAHSANNGLDIAVRLLEPLKAEFP 100
Query: 118 GVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLDELNQMF 177
++S AD +A V + GG GR D +G LP+ T D L +F
Sbjct: 101 -ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVF 156
Query: 178 AKH-GLSQIDMIALSGAHTLGFSHCDRFANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRN 236
K GL+ D++ALSG HT+G +H +R P
Sbjct: 157 GKAMGLTDQDIVALSGGHTIGAAHKERSGFE-------------------------GPWT 191
Query: 237 VDPQIAINMDPVTPRTFDNMYYQNLVAG--KGL--FTSDQVLFTDASSQPTVNDFARNPL 292
+P I FDN Y+ L++G +GL SD+ L +D +P V+ +A +
Sbjct: 192 SNPLI-----------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADED 240
Query: 293 DFNAAFATAMRKLGRVG 309
F A +A A +KL +G
Sbjct: 241 AFFADYAEAHQKLSELG 257
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 106/257 (41%), Gaps = 48/257 (18%)
Query: 58 VPATLRLFFHDCFIVGCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCP 117
P LRL +H D P G + A + A +G D V+ + ++A+ P
Sbjct: 32 APLMLRLAWHSAGTF--DKGTKTGGPFGTIKHPA-ELAHSANNGLDIAVRLLEPLKAEFP 88
Query: 118 GVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLDELNQMF 177
++S AD +A V + GG GR D +G LP+ T D L +F
Sbjct: 89 -ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVF 144
Query: 178 AKH-GLSQIDMIALSGAHTLGFSHCDRFANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRN 236
K GL+ D++ALSG HT+G +H +R P
Sbjct: 145 GKAMGLTDQDIVALSGGHTIGAAHKERSGFE-------------------------GPWT 179
Query: 237 VDPQIAINMDPVTPRTFDNMYYQNLVAG--KGL--FTSDQVLFTDASSQPTVNDFARNPL 292
+P I FDN Y+ L++G +GL SD+ L +D +P V+ +A +
Sbjct: 180 SNPLI-----------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADED 228
Query: 293 DFNAAFATAMRKLGRVG 309
F A +A A +KL +G
Sbjct: 229 AFFADYAEAHQKLSELG 245
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 45/217 (20%)
Query: 98 AGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRAS 157
A +G D V+ + ++A+ P ++S AD +A V + GG GR D
Sbjct: 81 ANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEP 136
Query: 158 SVKGNLPEPTFNLDELNQMFAKH-GLSQIDMIALSGAHTLGFSHCDRFANRIYXXXXXXX 216
+G LP+ T D L +F K GL+ D++ALSG HT+G +H +R
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFE--------- 187
Query: 217 XXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVAG--KGL--FTSDQ 272
P +P I FDN Y+ L++G +GL SD+
Sbjct: 188 ----------------GPWTSNPLI-----------FDNSYFTELLSGEKEGLLQLPSDK 220
Query: 273 VLFTDASSQPTVNDFARNPLDFNAAFATAMRKLGRVG 309
L +D +P V+ +A + F A +A A +KL +G
Sbjct: 221 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 45/217 (20%)
Query: 98 AGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRAS 157
A +G D V+ + ++A+ P ++S AD +A V + GG GR D
Sbjct: 81 ANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEP 136
Query: 158 SVKGNLPEPTFNLDELNQMFAKH-GLSQIDMIALSGAHTLGFSHCDRFANRIYXXXXXXX 216
+G LP+ T D L +F K GL+ D++ALSG HT+G +H +R
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFE--------- 187
Query: 217 XXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVAG--KGL--FTSDQ 272
P +P I FDN Y+ L++G +GL SD+
Sbjct: 188 ----------------GPWTSNPLI-----------FDNSYFTELLSGEKEGLLQLPSDK 220
Query: 273 VLFTDASSQPTVNDFARNPLDFNAAFATAMRKLGRVG 309
L +D +P V+ +A + F A +A A +KL +G
Sbjct: 221 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 45/217 (20%)
Query: 98 AGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRAS 157
A +G D V+ + ++A+ P ++S AD +A V + GG GR D
Sbjct: 69 ANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEP 124
Query: 158 SVKGNLPEPTFNLDELNQMFAKH-GLSQIDMIALSGAHTLGFSHCDRFANRIYXXXXXXX 216
+G LP+ T D L +F K GL+ D++ALSG HT+G +H +R
Sbjct: 125 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFE--------- 175
Query: 217 XXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVAG--KGL--FTSDQ 272
P +P I FDN Y+ L++G +GL SD+
Sbjct: 176 ----------------GPWTSNPLI-----------FDNSYFTELLSGEKEGLLQLPSDK 208
Query: 273 VLFTDASSQPTVNDFARNPLDFNAAFATAMRKLGRVG 309
L +D +P V+ +A + F A +A A +KL +G
Sbjct: 209 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 45/217 (20%)
Query: 98 AGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRAS 157
A +G D V+ + ++A+ P ++S AD +A V + GG GR D
Sbjct: 69 ANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEP 124
Query: 158 SVKGNLPEPTFNLDELNQMFAKH-GLSQIDMIALSGAHTLGFSHCDRFANRIYXXXXXXX 216
+G LP+ T D L +F K GL+ D++ALSG HT+G +H +R
Sbjct: 125 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFE--------- 175
Query: 217 XXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVAG--KGL--FTSDQ 272
P +P I FDN Y+ L++G +GL SD+
Sbjct: 176 ----------------GPWTSNPLI-----------FDNSYFTELLSGEKEGLLQLPSDK 208
Query: 273 VLFTDASSQPTVNDFARNPLDFNAAFATAMRKLGRVG 309
L +D +P V+ +A + F A +A A +KL +G
Sbjct: 209 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 45/217 (20%)
Query: 98 AGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRAS 157
A +G D V+ + ++A+ P ++S AD +A V + GG GR D
Sbjct: 69 ANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEP 124
Query: 158 SVKGNLPEPTFNLDELNQMFAKH-GLSQIDMIALSGAHTLGFSHCDRFANRIYXXXXXXX 216
+G LP+ T D L +F K GL+ D++ALSG HT+G +H +R
Sbjct: 125 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFE--------- 175
Query: 217 XXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVAG--KGL--FTSDQ 272
P +P I FDN Y+ L++G +GL SD+
Sbjct: 176 ----------------GPWTSNPLI-----------FDNSYFTELLSGEKEGLLQLPSDK 208
Query: 273 VLFTDASSQPTVNDFARNPLDFNAAFATAMRKLGRVG 309
L +D +P V+ +A + F A +A A +KL +G
Sbjct: 209 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 45/217 (20%)
Query: 98 AGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRAS 157
A +G D V+ + ++A+ P ++S AD +A V + GG GR D
Sbjct: 81 ANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEP 136
Query: 158 SVKGNLPEPTFNLDELNQMFAKH-GLSQIDMIALSGAHTLGFSHCDRFANRIYXXXXXXX 216
+G LP+ T D L +F K GL+ D++ALSG HT+G +H +R
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFE--------- 187
Query: 217 XXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVAG--KGL--FTSDQ 272
P +P I FDN Y+ L++G +GL SD+
Sbjct: 188 ----------------GPWTSNPLI-----------FDNSYFTELLSGEKEGLLQLPSDK 220
Query: 273 VLFTDASSQPTVNDFARNPLDFNAAFATAMRKLGRVG 309
L +D +P V+ +A + F A +A A +KL +G
Sbjct: 221 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 45/217 (20%)
Query: 98 AGDGFDTVVQAKQAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRAS 157
A +G D V+ + ++A+ P ++S AD +A V + GG GR D
Sbjct: 81 ANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEP 136
Query: 158 SVKGNLPEPTFNLDELNQMFAKH-GLSQIDMIALSGAHTLGFSHCDRFANRIYXXXXXXX 216
+G LP+ T D L +F K GL+ D++ALSG HT+G +H +R
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFE--------- 187
Query: 217 XXXXXXXAYAQQLMQSCPRNVDPQIAINMDPVTPRTFDNMYYQNLVAG--KGL--FTSDQ 272
P +P I FDN Y+ L++G +GL SD+
Sbjct: 188 ----------------GPWTSNPLI-----------FDNSYFTELLSGEKEGLLQLPSDK 220
Query: 273 VLFTDASSQPTVNDFARNPLDFNAAFATAMRKLGRVG 309
L +D +P V+ +A + F A +A A +KL +G
Sbjct: 221 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 105/257 (40%), Gaps = 48/257 (18%)
Query: 58 VPATLRLFFHDCFIVGCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQAVEAQCP 117
P LRL +H D P G + A + A +G D V+ + ++A+ P
Sbjct: 44 APLMLRLAWHSAGTF--DKGTKTGGPFGTIKHPA-ELAHSANNGLDIAVRLLEPLKAEFP 100
Query: 118 GVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLDELNQMF 177
++S AD +A V + GG GR D +G LP+ T D L +F
Sbjct: 101 -ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVF 156
Query: 178 AKH-GLSQIDMIALSGAHTLGFSHCDRFANRIYXXXXXXXXXXXXXXAYAQQLMQSCPRN 236
K GL+ D++ALSG HT+G +H + P
Sbjct: 157 GKAMGLTDQDIVALSGGHTIGAAHKEASGFE-------------------------GPWT 191
Query: 237 VDPQIAINMDPVTPRTFDNMYYQNLVAG--KGL--FTSDQVLFTDASSQPTVNDFARNPL 292
+P I FDN Y+ L++G +GL SD+ L +D +P V+ +A +
Sbjct: 192 SNPLI-----------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADED 240
Query: 293 DFNAAFATAMRKLGRVG 309
F A +A A +KL +G
Sbjct: 241 AFFADYAEAHQKLSELG 257
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 102/260 (39%), Gaps = 19/260 (7%)
Query: 52 SQTFITVPATLRLFFHDCFIVGCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQA 111
S+ P+ +RL +H+ C SPN + + P+ L G D +A +
Sbjct: 21 SEKLELGPSLIRLAWHEAASYDCFKK--DGSPNSASMRFKPECLYAGNKGLDIPRKALET 78
Query: 112 VEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLD 171
++ + P +S AD+ +AA + GG GR D G LP+ +
Sbjct: 79 LKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQS 137
Query: 172 ELNQMFAKHGLSQIDMIALSGAHTLGFSHCDRFANRIYXXXXXXXXXXXXXXAYAQQLMQ 231
+ ++F + G + + +AL GAHT G +H + F+ Y + Q L +
Sbjct: 138 HVREVFRRLGFNDQETVALIGAHTCGETHIE-FSG--YHGPWTHDKNGFDNSFFTQLLDE 194
Query: 232 SCPRNVDPQIAINMDPVTPRTFDNMYYQNLVAGKGLFTSDQVLFTDASSQPTVNDFARNP 291
N + MD T + + SD L D S + V +A++
Sbjct: 195 DWVLNPKVEQMQLMDRATTKLM-------------MLPSDVCLLLDPSYRKYVELYAKDN 241
Query: 292 LDFNAAFATAMRKLGRVGVK 311
FN FA A +KL +G +
Sbjct: 242 DRFNKDFANAFKKLTELGTR 261
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 101/260 (38%), Gaps = 19/260 (7%)
Query: 52 SQTFITVPATLRLFFHDCFIVGCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQA 111
S+ P+ +RL +H+ C SPN + + P+ L G D +A +
Sbjct: 20 SEKLELGPSLIRLAWHEAASYDCFKK--DGSPNSASMRFKPECLYAGNKGLDIPRKALET 77
Query: 112 VEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLD 171
++ + P +S AD+ +AA + GG GR D G LP+ +
Sbjct: 78 LKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQS 136
Query: 172 ELNQMFAKHGLSQIDMIALSGAHTLGFSHCDRFANRIYXXXXXXXXXXXXXXAYAQQLMQ 231
+ ++F + G + + +AL GAHT G H + F+ Y + Q L +
Sbjct: 137 HVREVFRRLGFNDQETVALIGAHTCGECHIE-FSG--YHGPWTHDKNGFDNSFFTQLLDE 193
Query: 232 SCPRNVDPQIAINMDPVTPRTFDNMYYQNLVAGKGLFTSDQVLFTDASSQPTVNDFARNP 291
N + MD T + + SD L D S + V +A++
Sbjct: 194 DWVLNPKVEQMQLMDRATTKLM-------------MLPSDVCLLLDPSYRKYVELYAKDN 240
Query: 292 LDFNAAFATAMRKLGRVGVK 311
FN FA A +KL +G +
Sbjct: 241 DRFNKDFANAFKKLTELGTR 260
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 101/260 (38%), Gaps = 19/260 (7%)
Query: 52 SQTFITVPATLRLFFHDCFIVGCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQA 111
S+ P+ +RL +H+ C SPN + + P+ L G D +A +
Sbjct: 21 SEKLELGPSLIRLAWHEAASYDCFKK--DGSPNSASMRFKPECLYAGNKGLDIPRKALET 78
Query: 112 VEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLD 171
++ + P +S AD+ +AA + GG GR D G LP+ +
Sbjct: 79 LKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQS 137
Query: 172 ELNQMFAKHGLSQIDMIALSGAHTLGFSHCDRFANRIYXXXXXXXXXXXXXXAYAQQLMQ 231
+ ++F + G + + +AL GAHT G H + F+ Y + Q L +
Sbjct: 138 HVREVFRRLGFNDQETVALIGAHTCGECHIE-FSG--YHGPWTHDKNGFDNSFFTQLLDE 194
Query: 232 SCPRNVDPQIAINMDPVTPRTFDNMYYQNLVAGKGLFTSDQVLFTDASSQPTVNDFARNP 291
N + MD T + + SD L D S + V +A++
Sbjct: 195 DWVLNPKVEQMQLMDRATTKLM-------------MLPSDVCLLLDPSYRKYVELYAKDN 241
Query: 292 LDFNAAFATAMRKLGRVGVK 311
FN FA A +KL +G +
Sbjct: 242 DRFNKDFANAFKKLTELGTR 261
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 28/201 (13%)
Query: 120 VSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPE--PTFNLDELNQMF 177
V+ AD+ +A+ + AGG ++ GR D +G LP+ P L +F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 178 AKHGLSQIDMIALSGAHTLGFSHCDRFA-NRIYXXXXXXXXXXXXXXAYAQQLMQSCPRN 236
+ GL+ +++ALSGAHTLG S DR + ++ Q ++
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTAQWLK----- 201
Query: 237 VDPQIAINMDPVTPRTFDNMYYQNLVAGKG----LFTSDQVLFTDASSQPTVNDFARNPL 292
FDN Y++++ + + +D LF D S + +A +P
Sbjct: 202 ----------------FDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPE 245
Query: 293 DFNAAFATAMRKLGRVGVKTG 313
F +A A KL +G K G
Sbjct: 246 AFFKDYAEAHAKLSNLGAKFG 266
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
D + F + ++ +++ALSGAHTLG +H
Sbjct: 151 ADYVRTFFQRLNMNDREVVALSGAHTLGKTHL 182
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
D + F + ++ +++AL GAHTLG +H
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHTLGKTHL 182
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
D + F + ++ +++AL GAHTLG +H
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHTLGKTHL 182
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
D + F + ++ +++AL GAHTLG +H
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHTLGKTHL 182
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
D + F + ++ +++AL GAHTLG +H
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHTLGKTHL 182
>pdb|1QGE|E Chain E, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 97
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 147 GRRDGLVSRASSVKGNLPEPTF---NLDELNQMFAKHGLSQIDMIALSGAH 194
G+ DGLVSR SS+ G + ++ +LDE+NQ+ G + D +A+ H
Sbjct: 38 GQNDGLVSRCSSLFGQVISTSYHWNHLDEINQLLGVRGANAEDPVAVIRTH 88
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 147 GRRDGLVSRASSVKGNLPEPTF---NLDELNQMFAKHGLSQIDMIALSGAH 194
G+ DGLVSR SS+ G + ++ +LDE+NQ+ G + D +A+ H
Sbjct: 260 GQNDGLVSRCSSLFGQVISTSYHWNHLDEINQLLGVRGANAEDPVAVIRTH 310
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 147 GRRDGLVSRASSVKGNLPEPTF---NLDELNQMFAKHGLSQIDMIALSGAH 194
G+ DGLVSR SS+ G + ++ +LDE+NQ+ G + D +A+ H
Sbjct: 259 GQNDGLVSRCSSLFGQVISTSYHWNHLDEINQLLGVRGANAEDPVAVIRTH 309
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 152
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHCDR 203
D + F + ++ +++AL GAH LG +H R
Sbjct: 153 ADYVRTFFQRLNMNDREVVALMGAHALGKTHLKR 186
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 152
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHCDR 203
D + F + ++ +++AL GAH LG +H R
Sbjct: 153 ADYVRTFFQRLNMNDREVVALMGAHALGKTHLKR 186
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHCDR 203
D + F + ++ +++AL GAH LG +H R
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHLKR 184
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHCDR 203
D + F + ++ +++AL GAH LG +H R
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHLKR 184
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 92 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 149
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHCDR 203
D + F + ++ +++AL GAH LG +H R
Sbjct: 150 ADYVRTFFQRLNMNDREVVALMGAHALGKTHLKR 183
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 147
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHCDR 203
D + F + ++ +++AL GAH LG +H R
Sbjct: 148 ADYVRTFFQRLNMNDREVVALMGAHALGKTHLKR 181
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 86 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 143
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHCDR 203
D + F + ++ +++AL GAH LG +H R
Sbjct: 144 ADYVRTFFQRLNMNDREVVALMGAHALGKTHLKR 177
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
D + F + ++ +++AL GAH LG +H
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEWQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 152
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
D + F + ++ +++AL GAH LG +H
Sbjct: 153 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
D + F + ++ +++AL GAH LG +H
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
D + F + ++ +++AL GAH LG +H
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 152
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
D + F + ++ +++AL GAH LG +H
Sbjct: 153 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
D + F + ++ +++AL GAH LG +H
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
D + F + ++ +++AL GAH LG +H
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 92 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 149
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
D + F + ++ +++AL GAH LG +H
Sbjct: 150 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL 181
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
D + F + ++ +++AL GAH LG +H
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 147 GRRDGLVSRASSVKGNLPEPTF---NLDELNQMFAKHGLSQIDMIALSGAH 194
G+ DG+VS+ S++ G + ++ +LDE+NQ+ G + D +A+ H
Sbjct: 261 GQNDGVVSKCSALYGQVLSTSYKWNHLDEINQLLGVRGANAEDPVAVIRTH 311
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 147 GRRDGLVSRASSVKGNLPEPTF---NLDELNQMFAKHGLSQIDMIALSGAH 194
G+ DG+VS+ S++ G + ++ +LDE+NQ+ G + D +A+ H
Sbjct: 261 GQNDGVVSKCSALYGQVLSTSYKWNHLDEINQLLGVRGANAEDPVAVIRTH 311
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 21/144 (14%)
Query: 61 TLRLFFHDCFIV-------GCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQAVE 113
+LRL FHD G D S++ E + P N G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAFD---TIETNFPANA-----GIDEIVSAQKPFV 92
Query: 114 AQCPGVVSCADILAIA-ARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLDE 172
A+ +S D + A A V GG LGR D + A+S +PEP ++D
Sbjct: 93 AK--HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAV---AASPDHLVPEPFDSVDS 147
Query: 173 LNQMFAKHGLSQIDMIALSGAHTL 196
+ G S +++++L +H++
Sbjct: 148 ILARMGDAGFSPVEVVSLLASHSI 171
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 61 TLRLFFHDCFIV-------GCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQAVE 113
+LRL FHD G D S++ E + P N G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAFD---TIETNFPANA-----GIDEIVSAQKPFV 92
Query: 114 AQCPGVVSCADILAIA-ARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLDE 172
A+ +S D + A A V GG LGR D + A+S +PEP ++D
Sbjct: 93 AK--HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAV---AASPDHLVPEPQDSVDS 147
Query: 173 LNQMFAKHGLSQIDMIALSGAHTL 196
+ G S ++++ L +H++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSI 171
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 95/261 (36%), Gaps = 44/261 (16%)
Query: 61 TLRLFFHDCFIV-------GCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQAVE 113
+LRL FHD G D S++ E + P N G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAFD---TIETNFPANA-----GIDEIVSAQKPFV 92
Query: 114 AQCPGVVSCADILAIA-ARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLDE 172
A+ +S D + A A V GG LGR D + A+S +PEP ++D
Sbjct: 93 AK--HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAV---AASPDHLVPEPFDSVDS 147
Query: 173 LNQMFAKHGLSQIDMIALSGAHTLGFSHCDRFANRIYXXXXXXXXXXXXXXAYAQQLMQS 232
+ G S ++++ L +H++ + D+ I S
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSI--AAADKVDPSIPGTP-----------------FDS 188
Query: 233 CPRNVDPQIAINMD---PVTPRTFDNM-YYQNLVAGKGLFTSDQVLFTDASSQPTVNDFA 288
P D Q I + P T DN Q+ + G+ SD +L D + F
Sbjct: 189 TPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSFV 248
Query: 289 RNPLDFNAAFATAMRKLGRVG 309
N FA M K+ +G
Sbjct: 249 NNQPKIQNRFAATMSKMALLG 269
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 61 TLRLFFHDCFIV-------GCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQAVE 113
+LRL FHD G D S++ E + P N G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAFD---TIETNFPANA-----GIDEIVSAQKPFV 92
Query: 114 AQCPGVVSCADILAIA-ARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLDE 172
A+ +S D + A A V GG LGR D + A+S +PEP ++D
Sbjct: 93 AK--HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAV---AASPDHLVPEPFDSVDS 147
Query: 173 LNQMFAKHGLSQIDMIALSGAHTL 196
+ G S ++++ L +H++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSI 171
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 61 TLRLFFHDCFIV-------GCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQAVE 113
+LRL FHD G D S++ E + P N G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAFD---TIETNFPANA-----GIDEIVSAQKPFV 92
Query: 114 AQCPGVVSCADILAIA-ARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLDE 172
A+ +S D + A A V GG LGR D + A+S +PEP ++D
Sbjct: 93 AK--HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAV---AASPDHLVPEPFDSVDS 147
Query: 173 LNQMFAKHGLSQIDMIALSGAHTL 196
+ G S ++++ L +H++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSI 171
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 61 TLRLFFHDCFIV-------GCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQAVE 113
+LRL FHD G D S++ E + P N G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAFD---TIETNFPANA-----GIDEIVSAQKPFV 92
Query: 114 AQCPGVVSCADILAIA-ARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLDE 172
A+ +S D + A A V GG LGR D + A+S +PEP ++D
Sbjct: 93 AK--HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAV---AASPDHLVPEPFDSVDS 147
Query: 173 LNQMFAKHGLSQIDMIALSGAHTL 196
+ G S ++++ L +H++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSI 171
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 61 TLRLFFHDCFIV-------GCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQAVE 113
+LRL FHD G D S++ E + P N G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAFD---TIETNFPANA-----GIDEIVSAQKPFV 92
Query: 114 AQCPGVVSCADILAIA-ARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLDE 172
A+ +S D + A A V GG LGR D + A+S +PEP ++D
Sbjct: 93 AK--HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAV---AASPDHLVPEPFDSVDS 147
Query: 173 LNQMFAKHGLSQIDMIALSGAHTL 196
+ G S ++++ L +H++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSI 171
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 61 TLRLFFHDCFIV-------GCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQAVE 113
+LRL FHD G D S++ E + P N G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAFD---TIETNFPANA-----GIDEIVSAQKPFV 92
Query: 114 AQCPGVVSCADILAIA-ARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLDE 172
A+ +S D + A A V GG LGR D + A+S +PEP ++D
Sbjct: 93 AK--HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAV---AASPDHLVPEPFDSVDS 147
Query: 173 LNQMFAKHGLSQIDMIALSGAHTL 196
+ G S ++++ L +H++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSI 171
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 61 TLRLFFHDCFIV-------GCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQAVE 113
+LRL FHD G D S++ E + P N G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAFD---TIETNFPANA-----GIDEIVSAQKPFV 92
Query: 114 AQCPGVVSCADILAIA-ARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLDE 172
A+ +S D + A A V GG LGR D + A+S +PEP ++D
Sbjct: 93 AK--HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAV---AASPDHLVPEPFDSVDS 147
Query: 173 LNQMFAKHGLSQIDMIALSGAHTL 196
+ G S ++++ L +H++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSI 171
>pdb|1XR5|A Chain A, Crystal Structure Of The Rna-Dependent Rna Polymerase 3d
From Human Rhinovirus Serotype 14
Length = 466
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 224 AYAQQLMQSCPRNVDPQIAINMDP-----VTP----RTFDNMYYQNLVAGKGLFTSDQ 272
AY L+ S P +DPQ+ + +TP TF M ++NL K F DQ
Sbjct: 324 AYGDDLIVSYPYELDPQVLATLGKNYGLTITPPDKSETFTKMTWENLTFLKRYFKPDQ 381
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 147
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 148 AGYVRTFFQRLNMNDREVVALKGAHALGKTHL 179
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 61 TLRLFFHDCFIV-------GCDASVLIQSPNGDAEKDAPDNLSLAGDGFDTVVQAKQAVE 113
+LRL FHD G D S++ E + P N G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAFD---TIETNFPANA-----GIDEIVSAQKPFV 92
Query: 114 AQCPGVVSCADILAIA-ARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFNLDE 172
A+ +S D + A A V GG LGR D + A+S +PEP ++D
Sbjct: 93 AK--HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAV---AASPDHLVPEPFDSVDS 147
Query: 173 LNQMFAKHGLSQIDMIALSGAHTL 196
+ G S ++++ L +H++
Sbjct: 148 ILARMGDAGFSPVEVVYLLASHSI 171
>pdb|1WLH|A Chain A, Molecular Structure Of The Rod Domain Of Dictyostelium
Filamin
pdb|1WLH|B Chain B, Molecular Structure Of The Rod Domain Of Dictyostelium
Filamin
Length = 311
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 94 NLSLAGD---GFDTVVQAKQAVEAQ-----CPGVVSCAD-------ILAIAARDVVVLAG 138
NL+L GD GF V K A A+ G+V D I A+ + V G
Sbjct: 82 NLTLDGDNVNGFPKTVTVKPAPSAEHSYAEGEGLVKVFDNAPAEFTIFAVDTKGVARTDG 141
Query: 139 GAPFSVELGRRDGLVSRASSVKGN 162
G PF V + DGLV A N
Sbjct: 142 GDPFEVAINGPDGLVVDAKVTDNN 165
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVD-TPEDTTPDNGRLPDADKD 152
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 96 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 153
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 154 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 185
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 96 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 153
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 154 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 185
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 152
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 152
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 152
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 96 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 153
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 154 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 185
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 152
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 147
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 96 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 153
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 154 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 185
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 152
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 152
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 147
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 147
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 152
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 147
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 152
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 147
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 91 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 148
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 149 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 180
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 147
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 147
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 152
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 147
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 91 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 148
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 149 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 180
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 152
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 147
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKD 147
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDYDKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 110 QAVEAQCPGVVSCADILAIAARDVVVLAGGAPFSVELGRRDGLVSRASSVKGNLPEPTFN 169
+ + + P +S D+ ++ V G GR D + G LP+ +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDMDKD 150
Query: 170 LDELNQMFAKHGLSQIDMIALSGAHTLGFSHC 201
+ F + ++ +++AL GAH LG +H
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 165 EPTFNLDEL----NQMFAKHGLSQIDMIALSGAHTLGFSHC 201
P LDE+ AKHG++ D IA +GA +G S+C
Sbjct: 83 HPNIGLDEVVAIQKPFIAKHGVTPGDFIAFAGA--VGVSNC 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,602,952
Number of Sequences: 62578
Number of extensions: 322558
Number of successful extensions: 823
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 128
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)