BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020450
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15032|R3HD1_HUMAN R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3
Length = 1099
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 3 TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
+T + E L +K+N + ++L +E+ +++F+ ++ S + PM SY+R+LLHR
Sbjct: 148 STGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRK--KFPPMTSYHRMLLHR 205
Query: 63 LADIFGFAHESVGEGVDRHLILERCSETSIPSI-----LVSDILWQYGEPQSLTTSHQIL 117
+A FG H G + +I+ + S T IP + D + + L +
Sbjct: 206 VAAYFGLDHNVDQSG--KSVIVNKTSNTRIPDQKFNEHIKDDKGEDFQKRYILKRDNSSF 263
Query: 118 RRKEAPPVLKIQSPSGEHSLAEREAAYLAARERIFSMDA 156
+ + ++++ S+ ERE Y AR+RIFS D+
Sbjct: 264 DKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDS 302
>sp|Q8MSX1|ENC_DROME Protein encore OS=Drosophila melanogaster GN=enc PE=1 SV=2
Length = 1818
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 4 TQFAMVEELAFL---VKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLL 60
T + + L F + N ++++L +E+ L++F+Q+ NS P SYNR+L+
Sbjct: 422 TDYGGTDLLVFFRDTLNKNPKDRNILLKIEKDLIDFVQE-NSRGCEYRFPPASSYNRMLI 480
Query: 61 HRLADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLT-TSHQILRR 119
HR A FG H +V + +I+ T IP I ++ L +H
Sbjct: 481 HRTAAFFGMEH-NVDTETQQCVIVAVAKNTRIPEIRFQSLVRDDARKSILKRDTHSFDEV 539
Query: 120 KEAPPVLKIQSPSGEHSLAEREAAYLAARERIFS 153
+++P + + S ERE Y AR RIFS
Sbjct: 540 RQSPYLCPLSLDRKAKSFEEREEDYDRARSRIFS 573
>sp|Q9DCB4|ARP21_MOUSE cAMP-regulated phosphoprotein 21 OS=Mus musculus GN=Arpp21 PE=1
SV=2
Length = 807
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 19/156 (12%)
Query: 13 AFLV---KDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGF 69
FL+ K+N + ++L ME+ +++F+ D N + + M SY R+L+HR+A FG
Sbjct: 150 GFLINTLKNNSRDRMILLKMEQEMIDFIADSN--NHYKKFPQMSSYQRMLVHRVAAYFGL 207
Query: 70 AHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEAPPVLKIQ 129
H G + +I+ + S T IP + L + +S + + + +++ + K
Sbjct: 208 DHNVDQTG--KSVIINKTSSTRIPEQRFCEHL---KDEKSEESQKRFILKRDNSSIDKED 262
Query: 130 SPSGEH---------SLAEREAAYLAARERIFSMDA 156
+ + H S+ ERE Y RERIF+ D+
Sbjct: 263 NQNRMHPFRDDRRSKSIEEREEEYQRVRERIFAHDS 298
>sp|A0JNC2|R3HD2_BOVIN R3H domain-containing protein 2 OS=Bos taurus GN=R3HDM2 PE=2 SV=1
Length = 989
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 3 TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
+T + E L +K N + ++L +E+ +++F+ D+N+ + M SY+R+LLHR
Sbjct: 149 STGIDLHEFLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ--FKKFPQMTSYHRMLLHR 206
Query: 63 LADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEA 122
+A FG H G + +I+ + S T IP S+ + E + IL+R +A
Sbjct: 207 VAAYFGMDHNVDQTG--KAVIINKTSNTRIPEQRFSEHIKD--EKNTEFQQRFILKRDDA 262
Query: 123 PP-------VLKIQSPSGEHSLAEREAAYLAARERIFS 153
+ +Q S+ ERE Y RERIF+
Sbjct: 263 SMDRDDNQIRVPLQDGRRSKSIEEREEEYQRVRERIFA 300
>sp|Q80TM6|R3HD2_MOUSE R3H domain-containing protein 2 OS=Mus musculus GN=R3hdm2 PE=2 SV=2
Length = 1044
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 3 TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
+T + E L +K N + ++L +E+ +++F+ D+N+ + M SY+R+LLHR
Sbjct: 149 STGIDLHEFLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ--FKKFPQMTSYHRMLLHR 206
Query: 63 LADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEA 122
+A FG H G + +I+ + S T IP S+ + E + IL+R +A
Sbjct: 207 VAAYFGMDHNVDQTG--KAVIINKTSSTRIPEQRFSEHIKD--EKNTEFQQRFILKRDDA 262
Query: 123 P-------PVLKIQSPSGEHSLAEREAAYLAARERIFS 153
+ +Q S+ ERE Y RERIF+
Sbjct: 263 SMDRDDNQMRVPLQDGRRSKSIEEREEEYQRVRERIFA 300
>sp|Q9UBL0|ARP21_HUMAN cAMP-regulated phosphoprotein 21 OS=Homo sapiens GN=ARPP21 PE=1
SV=2
Length = 812
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 17/164 (10%)
Query: 3 TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
+T + E L +K+N + ++L ME+ +++F+ D+N + + M SY R+L+HR
Sbjct: 144 STGIDLHEFLINTLKNNSRDRMILLKMEQEIIDFIADNN--NHYKKFPQMSSYQRMLVHR 201
Query: 63 LADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILW-QYGEPQSLTTSHQILRRKE 121
+A FG H G + +I+ + S T IP + L + GE + IL+R
Sbjct: 202 VAAYFGLDHNVDQTG--KSVIINKTSSTRIPEQRFCEHLKDEKGE---ESQKRFILKRDN 256
Query: 122 APPVLKIQSPSGEH---------SLAEREAAYLAARERIFSMDA 156
+ + + H S+ ERE Y RERIF+ D+
Sbjct: 257 SSIDKEDNQQNRMHPFRDDRRSKSIEEREEEYQRVRERIFAHDS 300
>sp|Q9Y2K5|R3HD2_HUMAN R3H domain-containing protein 2 OS=Homo sapiens GN=R3HDM2 PE=1 SV=3
Length = 976
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 3 TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
+T + E L +K N + ++L +E+ ++ F+ D+N+ + M SY+R+LLHR
Sbjct: 149 STGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQ--FKKFPQMTSYHRMLLHR 206
Query: 63 LADIFGFAHESVGEGVDRHLILERCSETSIP 93
+A FG H G + +I+ + S T IP
Sbjct: 207 VAAYFGMDHNVDQTG--KAVIINKTSNTRIP 235
>sp|Q875B6|SQS1_PODAS Protein SQS1 OS=Podospora anserina GN=SQS1 PE=3 SV=1
Length = 718
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 18 DNLPSKHLV-LSMEE---ALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHES 73
D+L K+ V L +E+ LV FL S+D LE P+D + R++LH+LA F +S
Sbjct: 528 DDLRVKYPVGLRLEDFKTELVAFLI---SSDERLEFPPLDKHGRMVLHQLALKFNVKSQS 584
Query: 74 VGEGVDRHLILERCSET 90
G+G R +L R T
Sbjct: 585 TGKGTTRRPVLYRSKRT 601
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 52 MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERCSETSIPSI 95
+ S++RL +H+LA+ FG H+S GEG RH+ + R S S S+
Sbjct: 748 LSSHDRLRVHQLAEEFGLRHDSTGEGKARHITVSRRSPASSGSV 791
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 52 MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER 86
+ S++RL +H+LA+ FG H+S GEG RH+ + R
Sbjct: 748 LSSHDRLRVHQLAEEFGLKHDSTGEGKARHITVSR 782
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 38.9 bits (89), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 52 MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER 86
+ S++RLL+H++A+ G H+S GEG RH+ + R
Sbjct: 748 LSSHDRLLVHQIAEEHGLRHDSTGEGKARHITVSR 782
>sp|Q6ABU3|PATR_PROAC Putative phenylalanine aminotransferase OS=Propionibacterium acnes
(strain KPA171202 / DSM 16379) GN=pat PE=3 SV=1
Length = 352
Score = 38.1 bits (87), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 32/149 (21%)
Query: 23 KHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHL 82
+++V+ M+EA +F +DD + DG+ LE D N ++L + +G A +G +
Sbjct: 177 ENVVVVMDEAYCHFNRDDAAVDGLTLLE--DHPNVVVLRTFSKAYGLAGLRIGFAI---- 230
Query: 83 ILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEAPPVLKIQSPSGEHSLAEREA 142
S P I SD L + P ++TT L ++ A I S + E L ER
Sbjct: 231 --------STPEI--SDDLRRVATPFTVTT----LAQQAA-----IASLAAEDELNERVN 271
Query: 143 AYLAARERIFSMDARTVAEPVRQKPRSVP 171
+A R R+F E RQ + VP
Sbjct: 272 RIVAERTRVFD-------ELTRQGWKIVP 293
>sp|A6V726|FOLD_PSEA7 Bifunctional protein FolD OS=Pseudomonas aeruginosa (strain PA7)
GN=folD PE=3 SV=1
Length = 284
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 9 VEELAFLVKD-NLPSKHLVLSMEE--ALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL 63
EE+ FL + +LP+ S +E AL++ L DD + DG+L P+ ++ LLL R+
Sbjct: 58 CEEVGFLSQAYDLPAD---TSQDELLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERI 114
Query: 64 ---ADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRK 120
D+ GF ++G R +L C+ I ++L S YG + + I+ R
Sbjct: 115 HPDKDVDGFHPYNIGRLAQRMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRP 174
Query: 121 EA 122
A
Sbjct: 175 MA 176
>sp|Q05672|RBS1_YEAST RNA-binding suppressor of PAS kinase protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RBS1 PE=1
SV=1
Length = 457
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 25 LVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAH 71
++ +E ++V+F+ NS +L PM+SY RLL H++A+ H
Sbjct: 28 FIIELENSIVSFI---NSNTESFQLRPMNSYYRLLSHQIAEYHNLNH 71
>sp|Q9I2U6|FOLD_PSEAE Bifunctional protein FolD OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=folD PE=1
SV=1
Length = 284
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 32 ALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL---ADIFGFAHESVGEGVDRHLILER 86
AL++ L DD + DG+L P+ ++ LLL R+ D+ GF ++G R +L
Sbjct: 81 ALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQRMPLLRP 140
Query: 87 CSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEA 122
C+ I ++L S YG + + I+ R A
Sbjct: 141 CTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMA 176
>sp|Q02KT7|FOLD_PSEAB Bifunctional protein FolD OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=folD PE=3 SV=1
Length = 284
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 32 ALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL---ADIFGFAHESVGEGVDRHLILER 86
AL++ L DD + DG+L P+ ++ LLL R+ D+ GF ++G R +L
Sbjct: 81 ALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQRMPLLRP 140
Query: 87 CSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEA 122
C+ I ++L S YG + + I+ R A
Sbjct: 141 CTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMA 176
>sp|B7VB83|FOLD_PSEA8 Bifunctional protein FolD OS=Pseudomonas aeruginosa (strain LESB58)
GN=folD PE=3 SV=1
Length = 284
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 32 ALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL---ADIFGFAHESVGEGVDRHLILER 86
AL++ L DD + DG+L P+ ++ LLL R+ D+ GF ++G R +L
Sbjct: 81 ALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQRMPLLRP 140
Query: 87 CSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEA 122
C+ I ++L S YG + + I+ R A
Sbjct: 141 CTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMA 176
>sp|B1J675|FOLD_PSEPW Bifunctional protein FolD OS=Pseudomonas putida (strain W619)
GN=folD PE=3 SV=1
Length = 284
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 9 VEELAFLVKD-NLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL-- 63
EE+ F+ + +LPS+ ++ E L++ L DD + DG+L P+ ++ LLL R+
Sbjct: 58 CEEVGFISQAFDLPSETTQQALTE-LIDRLNDDPAVDGILLQLPLPAHLDASLLLERIRP 116
Query: 64 -ADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEA 122
D+ GF ++G R +L C+ I ++L S YG + + I+ R A
Sbjct: 117 DKDVDGFHPYNIGRLAQRIPLLRPCTPKGIMTLLESTGQDLYGMNAVIVGASNIVGRPMA 176
>sp|A5W638|FOLD_PSEP1 Bifunctional protein FolD OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=folD PE=3 SV=2
Length = 284
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 9 VEELAFLVKD-NLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL-- 63
EE+ F+ + +LPS+ ++ E L++ L DD + DG+L P+ ++ LLL R+
Sbjct: 58 CEEVGFISQAFDLPSETTQQALTE-LIDRLNDDPAVDGILLQLPLPAHLDASLLLERIRP 116
Query: 64 -ADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEA 122
D+ GF ++G R +L C+ I ++L S YG + + I+ R A
Sbjct: 117 DKDVDGFHPYNIGRLAQRIPLLRPCTPKGIMTLLESTGQDLYGMNAVIVGASNIVGRPMA 176
>sp|Q88KM5|FOLD2_PSEPK Bifunctional protein FolD 2 OS=Pseudomonas putida (strain KT2440)
GN=folD2 PE=3 SV=1
Length = 284
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 9 VEELAFLVKD-NLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL-- 63
EE+ F+ + +LPS+ ++ E L++ L DD + DG+L P+ ++ LLL R+
Sbjct: 58 CEEVGFISQAFDLPSETTQQALTE-LIDRLNDDPAVDGILLQLPLPAHLDASLLLERIRP 116
Query: 64 -ADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEA 122
D+ GF ++G R +L C+ I ++L S YG + + I+ R A
Sbjct: 117 DKDVDGFHPYNIGRLAQRIPLLRPCTPKGIMTLLESTGQDLYGMNAVIVGASNIVGRPMA 176
>sp|B0KJG3|FOLD1_PSEPG Bifunctional protein FolD 1 OS=Pseudomonas putida (strain GB-1)
GN=folD1 PE=3 SV=1
Length = 290
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 9 VEELAFLVKD-NLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL-- 63
EE+ F+ + +LPS+ ++ E L++ L DD + DG+L P+ ++ LLL R+
Sbjct: 64 CEEVGFISQAFDLPSETTQQALTE-LIDRLNDDPAVDGILLQLPLPAHLDASLLLERIRP 122
Query: 64 -ADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEA 122
D+ GF ++G R +L C+ I ++L S YG + + I+ R A
Sbjct: 123 DKDVDGFHPYNIGRLAQRIPLLRPCTPKGIMTLLESTGQDLYGMNAVIVGASNIVGRPMA 182
>sp|Q87YR0|FOLD1_PSESM Bifunctional protein FolD 1 OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=folD1 PE=3 SV=1
Length = 284
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 9 VEELAFLVKD-NLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL-- 63
EE+ F+ + +LP++ +++ L++ L +D + DG+L P+ ++ LLL R+
Sbjct: 58 CEEVGFISQAYDLPAETTQVALTN-LIDRLNEDAAVDGILLQLPLPAHLDASLLLERIRP 116
Query: 64 -ADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEA 122
D+ GF +VG R +L C+ I ++L S + YG + + I+ R A
Sbjct: 117 DKDVDGFHPYNVGRLAQRIPLLRPCTPKGIIALLESTGVDLYGLDAVVVGASNIVGRPMA 176
>sp|Q1ICB3|FOLD_PSEE4 Bifunctional protein FolD OS=Pseudomonas entomophila (strain L48)
GN=folD PE=3 SV=1
Length = 284
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 9 VEELAFLVKD-NLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL-- 63
EE+ F+ + +LPS ++ + L++ L DD + DG+L P+ ++ LLL R+
Sbjct: 58 CEEVGFISQAFDLPSDTTQQALTD-LIDRLNDDPAVDGILLQLPLPAHLDASLLLERIRP 116
Query: 64 -ADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEA 122
D+ GF ++G R +L C+ I ++L S YG + + I+ R A
Sbjct: 117 DKDVDGFHPYNIGRLAQRIPLLRPCTPKGIMTLLESTGQDLYGMNAVIVGASNIVGRPMA 176
>sp|Q48KZ8|FOLD1_PSE14 Bifunctional protein FolD 1 OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=folD1 PE=3 SV=1
Length = 284
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 9 VEELAFLVKD-NLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL-- 63
EE+ F+ + +LP++ ++ + L++ L +D + DG+L P+ ++ LLL R+
Sbjct: 58 CEEVGFISQAYDLPAETTQTALTD-LIDRLNEDAAVDGILLQLPLPAHLDASLLLERIRP 116
Query: 64 -ADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEA 122
D+ GF +VG R +L C+ I ++L S + YG + + I+ R A
Sbjct: 117 DKDVDGFHPYNVGRLAQRIPLLRPCTPKGIITLLESTGVDLYGLDAVVVGASNIVGRPMA 176
>sp|Q4ZVN1|FOLD1_PSEU2 Bifunctional protein FolD 1 OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=folD1 PE=3 SV=1
Length = 284
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 9 VEELAFLVKD-NLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL-- 63
EE+ F+ + +LP+ ++ + L++ L +D + DGVL P+ ++ LLL R+
Sbjct: 58 CEEVGFISQAYDLPADTTQAALTD-LIDRLNEDAAVDGVLLQLPLPAHLDASLLLERIRP 116
Query: 64 -ADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEA 122
D+ GF +VG R +L C+ I ++L S + YG + + I+ R A
Sbjct: 117 DKDVDGFHPYNVGRLAQRIPLLRPCTPKGIMTLLESTGVDLYGLDAVVVGASNIVGRPMA 176
>sp|Q8EG21|FOLD_SHEON Bifunctional protein FolD OS=Shewanella oneidensis (strain MR-1)
GN=folD PE=3 SV=1
Length = 284
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 32 ALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL---ADIFGFAHESVGEGVDRHLILER 86
AL++ L DD S DG+L P+ ++ + ++ R+ D+ GF +VG R +L
Sbjct: 81 ALIDQLNDDPSIDGILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQRIPVLRS 140
Query: 87 CSETSIPSILVSDILWQYGEPQSLTTSHQILRR 119
C+ I +++ S + YG + + I+ R
Sbjct: 141 CTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGR 173
>sp|Q3K9W7|FOLD_PSEPF Bifunctional protein FolD OS=Pseudomonas fluorescens (strain Pf0-1)
GN=folD PE=3 SV=1
Length = 284
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 9 VEELAFLVKD-NLPSKHLVLSMEEALVNF---LQDDNSADGVLELEPMDSY--NRLLLHR 62
EE+ FL + +LPS+ + +EAL + L DD + DGVL P+ + LL R
Sbjct: 58 CEEVGFLSQAYDLPSE----TTQEALTDLIDRLNDDPAIDGVLLQLPLPEHLDASKLLER 113
Query: 63 L---ADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRR 119
+ D+ GF +VG R +L C+ I ++L S YG + + I+ R
Sbjct: 114 IRPDKDVDGFHPYNVGRLAQRIPLLRPCTPKGIMTLLESTGADLYGMDAVVVGASNIVGR 173
Query: 120 KEA 122
A
Sbjct: 174 PMA 176
>sp|Q4K9J4|FOLD_PSEF5 Bifunctional protein FolD OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=folD PE=3 SV=1
Length = 284
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 9 VEELAFLVKD-NLPSKHLVLSMEE--ALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL 63
EE+ FL + +LP+ + E+ L++ L DD + DGVL P+ + LLL R+
Sbjct: 58 CEEVGFLSQAYDLPANT---TQEDLAGLIDRLNDDPNIDGVLLQLPLPEHLDASLLLERI 114
Query: 64 ---ADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRK 120
D+ GF +VG R +L C+ I ++L S YG + + I+ R
Sbjct: 115 RPDKDVDGFHPYNVGRLAQRIPLLRPCTPKGIMTLLESTGADLYGMDAVVVGASNIVGRP 174
Query: 121 EA 122
A
Sbjct: 175 MA 176
>sp|A6WLP9|FOLD_SHEB8 Bifunctional protein FolD OS=Shewanella baltica (strain OS185)
GN=folD PE=3 SV=1
Length = 284
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 32 ALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL---ADIFGFAHESVGEGVDRHLILER 86
+L++ L DD + DG+L P+ ++ + ++ R+ D+ GF +VG R +L
Sbjct: 81 SLIDSLNDDPTIDGILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQRIPVLRS 140
Query: 87 CSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEAPPVLKIQSPSGEHSLAEREAAYLA 146
C+ I +++ S + YG + + I+ R P L++ + R L
Sbjct: 141 CTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGR---PMTLELLLAGCTTTTCHRFTKNLE 197
Query: 147 ARERIFSMDARTVAEP 162
+ RI + V +P
Sbjct: 198 QKIRIADLVVVAVGKP 213
>sp|A3D303|FOLD_SHEB5 Bifunctional protein FolD OS=Shewanella baltica (strain OS155 /
ATCC BAA-1091) GN=folD PE=3 SV=1
Length = 284
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 32 ALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL---ADIFGFAHESVGEGVDRHLILER 86
+L++ L DD + DG+L P+ ++ + ++ R+ D+ GF +VG R +L
Sbjct: 81 SLIDSLNDDPTIDGILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQRIPVLRS 140
Query: 87 CSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEAPPVLKIQSPSGEHSLAEREAAYLA 146
C+ I +++ S + YG + + I+ R P L++ + R L
Sbjct: 141 CTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGR---PMTLELLLAGCTTTTCHRFTKNLE 197
Query: 147 ARERIFSMDARTVAEP 162
+ RI + V +P
Sbjct: 198 QKIRIADLVVVAVGKP 213
>sp|B8E5F1|FOLD_SHEB2 Bifunctional protein FolD OS=Shewanella baltica (strain OS223)
GN=folD PE=3 SV=1
Length = 284
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 32 ALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL---ADIFGFAHESVGEGVDRHLILER 86
+L++ L DD + DG+L P+ ++ + ++ R+ D+ GF +VG R +L
Sbjct: 81 SLIDSLNDDPTIDGILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQRIPVLRS 140
Query: 87 CSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEAPPVLKIQSPSGEHSLAEREAAYLA 146
C+ I +++ S + YG + + I+ R P L++ + R L
Sbjct: 141 CTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGR---PMTLELLLAGCTTTTCHRFTKNLE 197
Query: 147 ARERIFSMDARTVAEP 162
+ RI + V +P
Sbjct: 198 QKIRIADLVVVAVGKP 213
>sp|Q0HTK5|FOLD_SHESR Bifunctional protein FolD OS=Shewanella sp. (strain MR-7) GN=folD
PE=3 SV=1
Length = 284
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 32 ALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL---ADIFGFAHESVGEGVDRHLILER 86
AL++ L DD + DG+L P+ ++ + ++ R+ D+ GF +VG R +L
Sbjct: 81 ALIDELNDDPTIDGILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQRIPVLRS 140
Query: 87 CSETSIPSILVSDILWQYGEPQSLTTSHQILRR 119
C+ I +++ S + YG + + I+ R
Sbjct: 141 CTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGR 173
>sp|Q0HH99|FOLD_SHESM Bifunctional protein FolD OS=Shewanella sp. (strain MR-4) GN=folD
PE=3 SV=1
Length = 284
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 32 ALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL---ADIFGFAHESVGEGVDRHLILER 86
AL++ L DD + DG+L P+ ++ + ++ R+ D+ GF +VG R +L
Sbjct: 81 ALIDELNDDPTIDGILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQRIPVLRS 140
Query: 87 CSETSIPSILVSDILWQYGEPQSLTTSHQILRR 119
C+ I +++ S + YG + + I+ R
Sbjct: 141 CTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGR 173
>sp|A0KYM1|FOLD_SHESA Bifunctional protein FolD OS=Shewanella sp. (strain ANA-3) GN=folD
PE=3 SV=1
Length = 284
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 32 ALVNFLQDDNSADGVLELEPMDSY--NRLLLHRL---ADIFGFAHESVGEGVDRHLILER 86
AL++ L DD + DG+L P+ ++ + ++ R+ D+ GF +VG R +L
Sbjct: 81 ALIDELNDDPTIDGILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQRIPVLRS 140
Query: 87 CSETSIPSILVSDILWQYGEPQSLTTSHQILRR 119
C+ I +++ S + YG + + I+ R
Sbjct: 141 CTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGR 173
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 47 LELEP-MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER 86
LE P ++S++RL +H++A+ G H+S GEG R + + +
Sbjct: 744 LEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFITVSK 784
>sp|P75261|Y137_MYCPN UPF0134 protein MPN_137 OS=Mycoplasma pneumoniae (strain ATCC 29342
/ M129) GN=MPN_137 PE=3 SV=1
Length = 228
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 161 EPVRQKPRSVPIVAQRMIAHA-LGQKMKSGDQDTAVRDEITNEKLANEINIRESDKAGPN 219
E V +KP + + + H L QK+K QD V ++ A + ++R+S+ A N
Sbjct: 49 EVVTKKP------STKYVTHKQLDQKLKEFKQDLMVE---LHDTFATKADLRDSE-ARIN 98
Query: 220 TSLEAYQETTLLPGQNVNSLDKSNKKKG 247
LEA + LL G+ +N L + +K+G
Sbjct: 99 QKLEALVQVVLLHGEQINKLTQIVEKQG 126
>sp|O55076|CDK2_CRIGR Cyclin-dependent kinase 2 OS=Cricetulus griseus GN=CDK2 PE=2 SV=1
Length = 298
Score = 31.2 bits (69), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 25/159 (15%)
Query: 34 VNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERCSETSIP 93
++ L++ N + V L+ + + N+L L +F F H+ + + +D + T IP
Sbjct: 52 ISLLKELNHPNIVKLLDVIHTENKLYL-----VFEFLHQDLKKFMDASAV------TGIP 100
Query: 94 SILVSDILWQYGEPQSLTTSHQILRRKEAPPVLKIQSPSGEHSLAEREAAYLAARERIFS 153
L+ L+Q + + SH++L R P L I + G LA+ F
Sbjct: 101 LPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINA-EGSIKLAD------------FG 147
Query: 154 MDARTVAEPVRQKPRSVPIVAQRMIAHALGQKMKSGDQD 192
+ AR PVR V + R LG K S D
Sbjct: 148 L-ARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVD 185
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,113,052
Number of Sequences: 539616
Number of extensions: 4516453
Number of successful extensions: 12899
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 12805
Number of HSP's gapped (non-prelim): 162
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)