Query 020450
Match_columns 326
No_of_seqs 174 out of 368
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 03:09:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1whr_A Hypothetical KIAA1002 p 100.0 1.2E-33 4.2E-38 239.2 12.5 116 2-123 9-124 (124)
2 1msz_A DNA-binding protein smu 99.1 5.6E-11 1.9E-15 95.0 6.8 63 25-90 17-80 (86)
3 2cpm_A Sperm-associated antige 99.1 1.3E-10 4.3E-15 94.1 8.3 64 24-89 11-75 (94)
4 3gku_A Probable RNA-binding pr 97.7 3.5E-05 1.2E-09 70.9 5.2 43 46-88 167-210 (225)
5 1ug8_A Poly(A)-specific ribonu 97.2 0.00073 2.5E-08 54.0 7.1 65 20-86 7-75 (87)
6 3d45_A Poly(A)-specific ribonu 66.2 1.2 4.2E-05 44.7 0.0 43 20-64 170-212 (507)
7 2a1r_A Poly(A)-specific ribonu 62.5 1.6 5.4E-05 43.0 0.0 43 21-65 176-218 (430)
8 2fph_X YLMH; division protein, 29.6 1.4E+02 0.0048 25.2 7.0 60 20-84 8-70 (165)
9 3e11_A Predicted zincin-like m 23.3 33 0.0011 27.9 1.7 16 57-72 92-107 (114)
10 1hlv_A CENP-B, major centromer 12.6 76 0.0026 24.6 1.4 43 25-71 73-115 (131)
No 1
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=100.00 E-value=1.2e-33 Score=239.18 Aligned_cols=116 Identities=26% Similarity=0.423 Sum_probs=103.9
Q ss_pred CcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeeecCCcceE
Q 020450 2 STTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRH 81 (326)
Q Consensus 2 ~~tg~dl~efL~~~lk~npkDR~fLLkLEe~I~~FIqd~~~~~~sleFPPMNSYqRlLVHrLAeyyGL~heS~geG~~R~ 81 (326)
|++|+++.+||+++|++||+||+|||+||++|++||+++..+ .++|||||||+|||||+||+||||.|.++++ +++
T Consensus 9 d~~~~~vd~~l~eaL~~~~rdR~~il~lE~~i~~Fi~d~~~~--~~ef~pmnSy~RllvHrvAe~ygL~h~~d~~--~r~ 84 (124)
T 1whr_A 9 DSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQ--FKKFPQMTSYHRMLLHRVAAYFGMDHNVDQT--GKA 84 (124)
T ss_dssp CCCCSCHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSSCC--EEECCCCCHHHHHHHHHHHHHHTCCEEECSS--CSS
T ss_pred cCCCCccCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCCcc--ceECCCCCHHHHHHHHHHHHHhCcCccccCC--CCE
Confidence 689999999999999999999999999999999999999754 5999999999999999999999999987654 499
Q ss_pred EEEEecCCCCCCchhhhhhhhccCCCCCCCccccccccCCCC
Q 020450 82 LILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEAP 123 (326)
Q Consensus 82 VVI~KTp~TriP~~~LSElv~~~~~~~~~~p~~~ImkR~~~s 123 (326)
|+|+||++|++|+++|+|+++.. .. ...++.+|+||++++
T Consensus 85 VvV~Kt~~tr~P~~~lse~~~~~-~~-~~~~~~~vl~r~~~~ 124 (124)
T 1whr_A 85 VIINKTSNTRIPEQRFSEHIKDE-KN-TEFQQRFILSGPSSG 124 (124)
T ss_dssp EEEECCTTCCCCSCCGGGTSCSC-SC-CCCCCSSCCCCCCCC
T ss_pred EEEEeCCCCCCChHHHHHHhccc-cc-ccchheeeEecCCCC
Confidence 99999999999999999999642 22 335578999999764
No 2
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=99.15 E-value=5.6e-11 Score=95.04 Aligned_cols=63 Identities=29% Similarity=0.535 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCcceecCC-CChHHHHHHHHHHHHhCCeeeeecCCcceEEEEEecCCC
Q 020450 25 LVLSMEEALVNFLQDDNSADGVLELEP-MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERCSET 90 (326)
Q Consensus 25 fLLkLEe~I~~FIqd~~~~~~sleFPP-MNSYqRlLVHrLAeyyGL~heS~geG~~R~VVI~KTp~T 90 (326)
..+.++..|..|+.+.. . .+.||| +++++|++||.||+.|||.|.|.|+|.+|+|+|+|...+
T Consensus 17 ~~~~i~~~l~~F~~~~~-~--~l~FP~sLs~~eR~~IH~lA~~~GL~h~S~G~G~~R~l~V~k~~~~ 80 (86)
T 1msz_A 17 GVDHFRAMIVEFMASKK-M--QLEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFITVSKRAGS 80 (86)
T ss_dssp CCHHHHHHHHHHHHHTC-S--EEEECTTCCSHHHHHHHHHHHHTTEEEEEECSSSCCEEEEEECC--
T ss_pred hHHHHHHHHHHHhcCCC-c--EEEcCCCCCHHHHHHHHHHHHHcCCCcceeeCCCCeEEEEEEeCCc
Confidence 34569999999996543 2 599999 799999999999999999999999999999999998754
No 3
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.3e-10 Score=94.07 Aligned_cols=64 Identities=25% Similarity=0.425 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeeecCCcc-eEEEEEecCC
Q 020450 24 HLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVD-RHLILERCSE 89 (326)
Q Consensus 24 ~fLLkLEe~I~~FIqd~~~~~~sleFPPMNSYqRlLVHrLAeyyGL~heS~geG~~-R~VVI~KTp~ 89 (326)
-|..+.|+.|..|+++... +.+.|+|||+|+|.+||.+++.|||.++|.|+|+. |+|||++...
T Consensus 11 ~yR~~re~~L~~la~~~g~--~~v~L~PM~~~eRriIH~~l~~~gl~S~S~Geep~~R~VvI~~~~~ 75 (94)
T 2cpm_A 11 EFRKRMEKEVSDFIQDSGQ--IKKKFQPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKEF 75 (94)
T ss_dssp HHHHHHHHHHHHHHHCSSC--CEEECCCCCSSHHHHHHHHHHHHTCEEEEECSSSSCCEEEEECSTT
T ss_pred HHHHHHHHHHHHHHHhcCC--CceEeCCCCHHHHHHHHHHHHHCCCEEEEecCCCCceEEEEEeCCC
Confidence 4777899999999987653 24999999999999999999999999999999996 9999997653
No 4
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=97.68 E-value=3.5e-05 Score=70.94 Aligned_cols=43 Identities=30% Similarity=0.385 Sum_probs=38.5
Q ss_pred ceecCCCChHHHHHHHHHHHHh-CCeeeeecCCcceEEEEEecC
Q 020450 46 VLELEPMDSYNRLLLHRLADIF-GFAHESVGEGVDRHLILERCS 88 (326)
Q Consensus 46 sleFPPMNSYqRlLVHrLAeyy-GL~heS~geG~~R~VVI~KTp 88 (326)
.+.|+|||+|+|.+||...+.+ |+.++|.|+|+.|+|||.-..
T Consensus 167 ~v~L~PM~~~ERriIH~al~~~~~V~T~SeGeep~R~VVI~~~~ 210 (225)
T 3gku_A 167 SVSLEPMNPYERRIIHAALQNDKYVVTRSDGEEPFRHVIISLKR 210 (225)
T ss_dssp CEECCCCCHHHHHHHHHHTTTCSSEEEEEESSTTSCEEEEEECC
T ss_pred EEEccCCCHHHHHHHHHHHccCCCcEEEEeecCCCeEEEEEEcC
Confidence 4899999999999999987654 999999999999999998554
No 5
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=97.24 E-value=0.00073 Score=54.05 Aligned_cols=65 Identities=22% Similarity=0.382 Sum_probs=47.5
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCcceecCCCChHHHHHHHHHHH--HhCCeeee-ec-CCcceEEEEEe
Q 020450 20 LPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLAD--IFGFAHES-VG-EGVDRHLILER 86 (326)
Q Consensus 20 pkDR~fLLkLEe~I~~FIqd~~~~~~sleFPPMNSYqRlLVHrLAe--yyGL~heS-~g-eG~~R~VVI~K 86 (326)
+.++.||-.+-..|.+|+++.... .+.++|+|+|+|.||+.-+. |=+..|.. .. +...+.|+|.+
T Consensus 7 ~e~k~~id~i~~kIe~FL~s~~~~--~l~l~pCN~f~RkLIYQ~~~~kfp~~i~vet~~~e~~~~~ivv~~ 75 (87)
T 1ug8_A 7 GDQKKFIDQVIEKIEDFLQSEEKR--SLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVISK 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCC--EEECCCCCSHHHHHHHHHHHHHSSSSEEEEEECCSSSCSEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCC--ceecCCchHHHHHHHHHHHHHhcCCceEEEEEecCCceEEEEEEe
Confidence 457889999999999999988743 49999999999999999864 44444432 22 34445555554
No 6
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=66.22 E-value=1.2 Score=44.67 Aligned_cols=43 Identities=26% Similarity=0.437 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCcceecCCCChHHHHHHHHHH
Q 020450 20 LPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLA 64 (326)
Q Consensus 20 pkDR~fLLkLEe~I~~FIqd~~~~~~sleFPPMNSYqRlLVHrLA 64 (326)
+.++.|+-++-..|.+|+++... ..+.+||+|+|+|.|||.+.
T Consensus 170 ~~~~~~~~~~~~~I~~wl~~~~~--~~l~i~~~n~~~r~Lv~q~l 212 (507)
T 3d45_A 170 EDQKKFIDQVIEKIEDFLQSEEK--RSLELDPCTGFQRKLIYQTL 212 (507)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC--CccccCCCcHHHHHHHHHHH
Confidence 56788999999999999988653 35899999999999999886
No 7
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=62.46 E-value=1.6 Score=43.00 Aligned_cols=43 Identities=23% Similarity=0.427 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCcceecCCCChHHHHHHHHHHH
Q 020450 21 PSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLAD 65 (326)
Q Consensus 21 kDR~fLLkLEe~I~~FIqd~~~~~~sleFPPMNSYqRlLVHrLAe 65 (326)
.++.|+-++-+.|.+|+++... +.+.++|+|+|||.|||.+..
T Consensus 176 e~~~~~~~~~~~i~~~l~~~~~--~~l~l~~~~~~qr~Lv~q~l~ 218 (430)
T 2a1r_A 176 DQKKFIDQVVEKIEDLLQSEEN--KNLDLEPCTGFQRKLIYQTLS 218 (430)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCC--CccccCCCcHHHHHHHHHHHH
Confidence 3567777788888889887653 359999999999999999864
No 8
>2fph_X YLMH; division protein, bacteria, GRAM+, DNA binding protein; 1.70A {Streptococcus pneumoniae}
Probab=29.56 E-value=1.4e+02 Score=25.25 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=40.7
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCcceecCC-CChHHHHHHHHHHHHhCCeeeeec--CCcceEEEE
Q 020450 20 LPSKHLVLSMEEALVNFLQDDNSADGVLELEP-MDSYNRLLLHRLADIFGFAHESVG--EGVDRHLIL 84 (326)
Q Consensus 20 pkDR~fLLkLEe~I~~FIqd~~~~~~sleFPP-MNSYqRlLVHrLAeyyGL~heS~g--eG~~R~VVI 84 (326)
+.++.++.++.+.+..-.+... ..+-+ +|+++..+++.++..+++.....| ++..|.+++
T Consensus 8 ~~e~~~i~~~~d~~~~a~~~~~-----~~~T~FL~p~e~~i~~~i~~~~~~~~~~~GGy~~AER~r~~ 70 (165)
T 2fph_X 8 IEDRPFLDKGMEWIKKVEDSYA-----PFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVL 70 (165)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTS-----CEECCCBCHHHHHHHHHHHHHTTCEEEEGGGTSCCSSBCEE
T ss_pred hhhHHHHHHHHHHHHHHHHhCC-----EEECCCCCHHHHHHHHHHHhccCcEEEEeCCCcHHheeEEE
Confidence 4466777777666554443322 45556 599999999999987799888877 445565443
No 9
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=23.31 E-value=33 Score=27.93 Aligned_cols=16 Identities=31% Similarity=0.690 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhCCeee
Q 020450 57 RLLLHRLADIFGFAHE 72 (326)
Q Consensus 57 RlLVHrLAeyyGL~he 72 (326)
.-+||++|.|||+.-+
T Consensus 92 ~vvvhEiahh~G~~~e 107 (114)
T 3e11_A 92 KTVVHEIAHHFGIDDE 107 (114)
T ss_dssp HHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHcCCCHH
Confidence 3679999999999754
No 10
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=12.56 E-value=76 Score=24.60 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCcceecCCCChHHHHHHHHHHHHhCCee
Q 020450 25 LVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAH 71 (326)
Q Consensus 25 fLLkLEe~I~~FIqd~~~~~~sleFPPMNSYqRlLVHrLAeyyGL~h 71 (326)
..-.+|+.|..||.+... ..+|+-...-|..+..+|..+|+..
T Consensus 73 ~~~~~E~~L~~Wi~~~~~----~g~pvs~~~I~~kA~~i~~~~g~~~ 115 (131)
T 1hlv_A 73 PYDKLEGLLIAWFQQIRA----AGLPVKGIILKEKALRIAEELGMDD 115 (131)
T ss_dssp TTHHHHHHHHHHHHHHGG----GTCCCCHHHHHHHHHHHHHHHTCTT
T ss_pred CCHHHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 455789999999987642 4678888888999999999998753
Done!