Your job contains 1 sequence.
>020452
MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPI
QKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP
KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGT
PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSE
QTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAG
MRANVAIVDLTNVSVLANKLEESFIE
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020452
(326 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2086775 - symbol:AT3G16840 species:3702 "Arabi... 1139 1.5e-115 1
DICTYBASE|DDB_G0281841 - symbol:ddx24 "DEAD/DEAH box heli... 343 1.9e-51 2
ASPGD|ASPL0000042587 - symbol:AN1750 species:162425 "Emer... 465 1.6e-43 1
MGI|MGI:1351337 - symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) bo... 327 8.7e-42 2
UNIPROTKB|E2RIC4 - symbol:DDX24 "Uncharacterized protein"... 328 1.2e-41 2
UNIPROTKB|G3V529 - symbol:DDX24 "ATP-dependent RNA helica... 327 1.5e-41 2
UNIPROTKB|Q9GZR7 - symbol:DDX24 "ATP-dependent RNA helica... 327 1.8e-41 2
UNIPROTKB|A6H7B6 - symbol:DDX24 "DDX24 protein" species:9... 327 2.2e-41 2
UNIPROTKB|F1NJ62 - symbol:F1NJ62 "Uncharacterized protein... 290 4.9e-41 3
RGD|727929 - symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box pol... 319 6.2e-41 2
UNIPROTKB|F1SCG7 - symbol:LOC100620190 "Uncharacterized p... 318 1.0e-40 2
WB|WBGene00018890 - symbol:F55F8.2 species:6239 "Caenorha... 424 4.4e-39 1
CGD|CAL0005900 - symbol:MAK5 species:5476 "Candida albica... 419 1.9e-38 1
POMBASE|SPBC4F6.07c - symbol:SPBC4F6.07c "ATP-dependent R... 239 1.6e-36 3
SGD|S000000346 - symbol:MAK5 "Essential nucleolar protein... 368 6.1e-33 1
FB|FBgn0032690 - symbol:CG10333 species:7227 "Drosophila ... 366 1.2e-32 1
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 319 4.3e-32 2
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 314 3.8e-31 2
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 314 3.8e-31 2
TIGR_CMR|CPS_2658 - symbol:CPS_2658 "ATP-dependent RNA he... 311 4.8e-31 2
FB|FBgn0034496 - symbol:CG9143 species:7227 "Drosophila m... 333 6.9e-31 2
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 222 9.7e-31 3
ASPGD|ASPL0000051195 - symbol:AN1634 species:162425 "Emer... 346 1.5e-30 1
ZFIN|ZDB-GENE-030131-6215 - symbol:ddx23 "DEAD (Asp-Glu-A... 346 1.6e-30 1
RGD|1308685 - symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box po... 346 1.7e-30 1
UNIPROTKB|A6QLB2 - symbol:DDX23 "Uncharacterized protein"... 346 1.7e-30 1
UNIPROTKB|E2RTL6 - symbol:DDX23 "Uncharacterized protein"... 346 1.7e-30 1
UNIPROTKB|Q9BUQ8 - symbol:DDX23 "Probable ATP-dependent R... 346 1.7e-30 1
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 308 2.6e-30 2
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 308 2.6e-30 2
TIGR_CMR|CPS_1590 - symbol:CPS_1590 "ATP-dependent RNA he... 305 3.9e-30 2
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 305 1.8e-29 2
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 305 1.8e-29 2
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 301 2.3e-29 2
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 301 2.3e-29 2
CGD|CAL0001091 - symbol:orf19.672 species:5476 "Candida a... 330 3.2e-29 1
UNIPROTKB|Q59W52 - symbol:PRP28 "Pre-mRNA-splicing ATP-de... 330 3.2e-29 1
TAIR|locus:2057640 - symbol:AT2G33730 species:3702 "Arabi... 333 3.2e-29 1
UNIPROTKB|F5GYL3 - symbol:DDX24 "ATP-dependent RNA helica... 327 8.1e-29 1
WB|WBGene00017162 - symbol:ddx-23 species:6239 "Caenorhab... 329 8.6e-29 1
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R... 319 8.9e-29 2
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"... 319 8.9e-29 2
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"... 319 8.9e-29 2
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"... 319 8.9e-29 2
MGI|MGI:1920895 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) bo... 319 8.9e-29 2
RGD|708480 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box pol... 319 8.9e-29 2
UNIPROTKB|Q62780 - symbol:Ddx46 "Probable ATP-dependent R... 319 8.9e-29 2
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 298 9.8e-29 2
ZFIN|ZDB-GENE-030131-667 - symbol:ddx46 "DEAD (Asp-Glu-Al... 303 1.1e-28 3
UNIPROTKB|I3LNN1 - symbol:DDX23 "Uncharacterized protein"... 329 1.1e-28 1
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 319 1.2e-28 1
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"... 315 2.4e-28 2
TIGR_CMR|CPS_3401 - symbol:CPS_3401 "ATP-dependent RNA he... 281 3.6e-28 2
TAIR|locus:2032910 - symbol:RH36 "RNA helicase 36" specie... 189 7.2e-28 3
GENEDB_PFALCIPARUM|PFE0925c - symbol:PFE0925c "snrnp prot... 323 9.0e-28 1
UNIPROTKB|Q8I0W7 - symbol:PFE0925c "Snrnp protein, putati... 323 9.0e-28 1
POMBASE|SPAC31A2.07c - symbol:dbp10 "ATP-dependent RNA he... 216 1.7e-27 3
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli... 308 1.7e-27 1
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 304 4.5e-27 1
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas... 280 1.1e-26 2
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ... 279 1.6e-26 2
UNIPROTKB|G4MSR4 - symbol:MGG_07099 "Uncharacterized prot... 288 1.8e-26 2
UNIPROTKB|F8VRX4 - symbol:DDX54 "ATP-dependent RNA helica... 187 2.1e-26 2
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 198 2.3e-26 2
GENEDB_PFALCIPARUM|PFL2475w - symbol:PFL2475w "DEAD/DEAH ... 278 2.5e-26 2
UNIPROTKB|Q8I4R9 - symbol:PFL2475w "DEAD/DEAH box helicas... 278 2.5e-26 2
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 206 3.3e-26 2
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 206 3.3e-26 2
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 192 4.8e-26 2
TAIR|locus:2010306 - symbol:EMB1586 "embryo defective 158... 300 5.2e-26 1
POMBASE|SPCC63.11 - symbol:prp28 "U5 snRNP-associated pro... 302 5.5e-26 1
POMBASE|SPCC10H11.01 - symbol:prp11 "ATP-dependent RNA he... 283 6.6e-26 2
FB|FBgn0010220 - symbol:Dbp45A "DEAD box protein 45A" spe... 180 8.8e-26 3
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h... 279 9.0e-26 2
WB|WBGene00001598 - symbol:glh-1 species:6239 "Caenorhabd... 270 1.1e-25 2
UNIPROTKB|P34689 - symbol:glh-1 "ATP-dependent RNA helica... 270 1.1e-25 2
FB|FBgn0030631 - symbol:CG6227 species:7227 "Drosophila m... 292 1.1e-25 2
CGD|CAL0004058 - symbol:DBP8 species:5476 "Candida albica... 210 1.2e-25 3
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 174 1.4e-25 3
ZFIN|ZDB-GENE-990415-272 - symbol:vasa "vasa homolog" spe... 258 1.9e-25 3
UNIPROTKB|Q8EHT1 - symbol:SO_1136 "ATP-dependent RNA heli... 290 2.2e-25 1
TIGR_CMR|SO_1136 - symbol:SO_1136 "ATP-dependent RNA heli... 290 2.2e-25 1
CGD|CAL0000625 - symbol:SPB4 species:5476 "Candida albica... 281 2.4e-25 2
WB|WBGene00001599 - symbol:glh-2 species:6239 "Caenorhabd... 267 2.6e-25 2
UNIPROTKB|Q966L9 - symbol:glh-2 "ATP-dependent RNA helica... 267 2.6e-25 2
ASPGD|ASPL0000062195 - symbol:AN10125 species:162425 "Eme... 195 2.7e-25 3
DICTYBASE|DDB_G0277857 - symbol:helB2 "putative U5 small ... 297 3.2e-25 1
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 195 4.0e-25 3
FB|FBgn0263231 - symbol:bel "belle" species:7227 "Drosoph... 281 4.1e-25 2
DICTYBASE|DDB_G0281925 - symbol:DDB_G0281925 "DEAD/DEAH b... 253 4.7e-25 2
DICTYBASE|DDB_G0275443 - symbol:helB1 "putative RNA splic... 279 5.3e-25 2
TAIR|locus:504955106 - symbol:emb1138 "embryo defective 1... 279 6.7e-25 2
POMBASE|SPBC17D1.06 - symbol:dbp3 "ATP-dependent RNA heli... 202 6.7e-25 3
GENEDB_PFALCIPARUM|PF14_0429 - symbol:PF14_0429 "RNA heli... 293 7.9e-25 1
UNIPROTKB|Q8IL21 - symbol:PF14_0429 "RNA helicase, putati... 293 7.9e-25 1
UNIPROTKB|G5EHR3 - symbol:MGCH7_ch7g509 "ATP-dependent RN... 268 8.4e-25 2
UNIPROTKB|Q90ZF6 - symbol:olvas "VASA" species:8090 "Oryz... 265 8.5e-25 2
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"... 171 8.7e-25 3
ZFIN|ZDB-GENE-980526-150 - symbol:pl10 "pl10" species:795... 276 1.6e-24 2
WB|WBGene00019219 - symbol:H20J04.4 species:6239 "Caenorh... 200 1.6e-24 2
WARNING: Descriptions of 747 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2086775 [details] [associations]
symbol:AT3G16840 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB028608 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702 EMBL:AK318706
EMBL:AY045669 EMBL:AY054475 EMBL:AJ010465 IPI:IPI00535611
IPI:IPI01019866 PIR:T51744 RefSeq:NP_188307.3 UniGene:At.5723
ProteinModelPortal:Q93Y39 SMR:Q93Y39 PaxDb:Q93Y39 PRIDE:Q93Y39
GeneID:820937 KEGG:ath:AT3G16840 GeneFarm:929 TAIR:At3g16840
InParanoid:Q93Y39 OMA:DAYLYYI Genevestigator:Q93Y39
GermOnline:AT3G16840 Uniprot:Q93Y39
Length = 826
Score = 1139 (406.0 bits), Expect = 1.5e-115, P = 1.5e-115
Identities = 227/316 (71%), Positives = 265/316 (83%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
VS DD EE V E EI EF AW+ +RLHPLLMKSIYRL FKEPT IQKAC AA+Q
Sbjct: 168 VSCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQ 227
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131
GKD+IGAAETGSGKTLAFGLPI+QRLL+EREK GK+ KGEEA+KYA G+LRALIITP
Sbjct: 228 GKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITP 287
Query: 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191
TRELALQVT+HL+ AK ++V+VVPIVGGM +EKQER LK +PE+VV TPGRLWELMS G
Sbjct: 288 TRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAG 347
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251
EKHLVELH+LSFFVLDEADRM+E GHFRELQSI+D+LP+T+ NEG+++ ++ TV ++
Sbjct: 348 EKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNV 407
Query: 252 QRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG-LNSIETLSERAGMRANVAIVDL 310
+KKRQT VFSATIALS+DFRKKLK GS K KQS +G +NSIE LSERAGMR NVAI+DL
Sbjct: 408 PKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDL 467
Query: 311 TNVSVLANKLEESFIE 326
T S+LA K+EESFI+
Sbjct: 468 TTTSILAPKIEESFIK 483
>DICTYBASE|DDB_G0281841 [details] [associations]
symbol:ddx24 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281841 GO:GO:0005524 GenomeReviews:CM000152_GR
GO:GO:0003723 EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_640452.1 ProteinModelPortal:Q54TD7
EnsemblProtists:DDB0234200 GeneID:8623265 KEGG:ddi:DDB_G0281841
KO:K14805 OMA:NIDHVAH Uniprot:Q54TD7
Length = 940
Score = 343 (125.8 bits), Expect = 1.9e-51, Sum P(2) = 1.9e-51
Identities = 66/124 (53%), Positives = 94/124 (75%)
Query: 109 EEKGEEAEKYAPKGH--LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ 166
EE+ EE E+ K + L +L+I PTRELA+QVT+H+K + N++V+ IVGGM++++Q
Sbjct: 388 EEEEEEEEEGRSKEYRKLFSLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMASQRQ 447
Query: 167 ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIID 226
+R+L RPE+VV TPGRLWEL++ G +HLVEL +L +DEADRM+E GHF EL+SI+
Sbjct: 448 QRVLSKRPEIVVATPGRLWELITEGHQHLVELESLLCLGIDEADRMVEQGHFAELESILK 507
Query: 227 MLPM 230
LP+
Sbjct: 508 TLPI 511
Score = 230 (86.0 bits), Expect = 1.9e-51, Sum P(2) = 1.9e-51
Identities = 43/99 (43%), Positives = 65/99 (65%)
Query: 19 AEEELVS-EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
+E++ +S E + + WN L PL++K + LGF +PT IQ + IP A G D+IG
Sbjct: 278 SEQKTISKEEQDQLDMSEWNSYNLDPLILKGLRSLGFSKPTEIQSSVIPVAVSSGYDVIG 337
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAE 116
AA+TGSGKTLAFG+P++QR+L+ K G+ +E K + +
Sbjct: 338 AAQTGSGKTLAFGIPMVQRILQHLRKHGQNVENKANKQQ 376
Score = 67 (28.6 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
Identities = 30/121 (24%), Positives = 48/121 (39%)
Query: 208 EADRMIENGHF--RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ D++ + G + + D +P Q EQ T KRQT VFSAT+
Sbjct: 536 KVDKLNDKGEMIKGDQDDMDDQIPDEEMEELEQEEQNHLTTT------HKRQTFVFSATL 589
Query: 266 A-LSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESF 324
+ D K+ L IE L E+ + + ++D+T + A L E+
Sbjct: 590 VNIPGD------GAPTSQKKKYRKLTPIENLIEKVRFQRDYKLIDVTQKRLTAKNLLETK 643
Query: 325 I 325
I
Sbjct: 644 I 644
Score = 37 (18.1 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 15 GPDDAEEELVSEAEISTEFDAWNELRLHPLLMK 47
G DD++ E + S + D ++ + P ++K
Sbjct: 99 GNDDSDNEYSGYQDDSDQDDEYSAAKKKPRIIK 131
>ASPGD|ASPL0000042587 [details] [associations]
symbol:AN1750 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:AACD01000027 EMBL:BN001307 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14805 HOGENOM:HOG000290702 RefSeq:XP_659354.1
ProteinModelPortal:Q5BCI0 STRING:Q5BCI0 PRIDE:Q5BCI0
EnsemblFungi:CADANIAT00008396 GeneID:2875695 KEGG:ani:AN1750.2
OMA:VEEGYFA OrthoDB:EOG44J5S7 Uniprot:Q5BCI0
Length = 770
Score = 465 (168.7 bits), Expect = 1.6e-43, P = 1.6e-43
Identities = 118/310 (38%), Positives = 174/310 (56%)
Query: 23 LVSEAEIS-TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAET 81
L EA+ + AW L L P + S+ +L F PT +QK+CIP G D+IG A T
Sbjct: 185 LEDEADDDGADISAWEPLGLSPETLTSLSKLKFSTPTSVQKSCIPPIL-DGHDVIGKAST 243
Query: 82 GSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTD 141
GSGKTLAFGLPI++ LE RE+ K ++ + EE EK P ALI++PTRELA Q+
Sbjct: 244 GSGKTLAFGLPILEHYLE-RERR-KTIDSE-EEKEKI-PI----ALILSPTRELAHQLQK 295
Query: 142 HLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
H+ + A G+N R + GG+S +KQ+RLL+ ++V+GTPGR+WE++ G+ + +
Sbjct: 296 HIYGLISNAPGVNARTALLTGGLSVQKQQRLLETA-DIVIGTPGRVWEVLRTGQGLIRRM 354
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 258
+ F V+DEADR++ GHF+E++ I+ L E + V + +RQT
Sbjct: 355 QGIKFLVIDEADRLLSEGHFKEVEDILSSLDRVEDGGPPDEEDDSSEENV--VPGVERQT 412
Query: 259 LVFSATIALSADFRKKLK-HGSLKLKQSVNGLNSIETLSERAGMRANVA-IVDLTNVSVL 316
LVFSAT D ++KL G +N S+E L ++ R +D+ VS +
Sbjct: 413 LVFSATF--HRDLQQKLAGKGKWTGGDIMNKKESMEYLLQKLNFREEKPKFIDVNPVSQM 470
Query: 317 ANKLEESFIE 326
A L+E +E
Sbjct: 471 AEGLKEGIVE 480
>MGI|MGI:1351337 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1351337
GO:GO:0005524 GO:GO:0003723 EMBL:CH466549 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 CTD:57062
HOGENOM:HOG000290702 HOVERGEN:HBG104200 EMBL:AF214732 EMBL:BC055048
EMBL:BC055317 EMBL:U46690 IPI:IPI00380228 RefSeq:NP_001152974.1
RefSeq:NP_065240.2 UniGene:Mm.3935 UniGene:Mm.475067
ProteinModelPortal:Q9ESV0 SMR:Q9ESV0 PhosphoSite:Q9ESV0
PaxDb:Q9ESV0 PRIDE:Q9ESV0 Ensembl:ENSMUST00000044923 GeneID:27225
KEGG:mmu:27225 GeneTree:ENSGT00550000074847 InParanoid:Q7TM97
OrthoDB:EOG45TCMP NextBio:305144 Bgee:Q9ESV0 CleanEx:MM_DDX24
Genevestigator:Q9ESV0 GermOnline:ENSMUSG00000041645 Uniprot:Q9ESV0
Length = 857
Score = 327 (120.2 bits), Expect = 8.7e-42, Sum P(2) = 8.7e-42
Identities = 79/207 (38%), Positives = 110/207 (53%)
Query: 100 EREKAGKMLEEKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
+ E+AGK+ +E ++ Y P+ L L++TPTRELA+QV H+ VAK + +
Sbjct: 362 DAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAIL 421
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
VGGMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GH
Sbjct: 422 VGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGH 481
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQT----QTCVTVSSLQRK---KRQTLVFSATIALSAD 270
F EL +++ML N S S QT T V + K+ T L
Sbjct: 482 FAELSQLLEML---NDSQYNPSRQTLVFSATLTLVHQAPARILHKKHVKKMDKTDKLDLL 538
Query: 271 FRKKLKHGSLKLKQSVNGLNSIETLSE 297
+K G K+ ++ETL+E
Sbjct: 539 MQKVGMRGKPKVIDLTRNEGTVETLTE 565
Score = 153 (58.9 bits), Expect = 8.7e-42, Sum P(2) = 8.7e-42
Identities = 31/85 (36%), Positives = 52/85 (61%)
Query: 16 PDDAEEELVSEA-EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKD 74
P +++ ++E + + AW +L + +++++ LGF PTPIQ + A D
Sbjct: 174 PKKSKKTWMAEVHDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLD 233
Query: 75 IIGAAETGSGKTLAFGLPIMQRLLE 99
I+GAAETGSGKTLAF +P++ +L+
Sbjct: 234 ILGAAETGSGKTLAFAIPMIHSVLQ 258
Score = 83 (34.3 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 256 RQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSV 315
RQTLVFSAT+ L ++ H K + ++ + ++ L ++ GMR ++DLT
Sbjct: 501 RQTLVFSATLTLVHQAPARILHK--KHVKKMDKTDKLDLLMQKVGMRGKPKVIDLTRNEG 558
Query: 316 LANKLEESFI 325
L E+ I
Sbjct: 559 TVETLTETKI 568
>UNIPROTKB|E2RIC4 [details] [associations]
symbol:DDX24 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:DQQEERR
GeneTree:ENSGT00550000074847 EMBL:AAEX03005950
Ensembl:ENSCAFT00000027950 Uniprot:E2RIC4
Length = 818
Score = 328 (120.5 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 78/204 (38%), Positives = 114/204 (55%)
Query: 100 EREKAGKMLEEKGEEAE--KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
+ E+ G++ +E G + K PK L L++TPTRELA+QV H+ VAK ++ +
Sbjct: 321 DEEETGRLKQELGGKMTTCKVHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAIL 380
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
VGGMST+KQ+R+L +PE+VV TPGRLWEL+ HL L L V+DEADRM+E GH
Sbjct: 381 VGGMSTQKQQRMLNRQPEIVVATPGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKGH 440
Query: 218 FRELQSIIDMLPMTNGSNEGQS---EQTQTCVTVSSLQ-RKKRQTLVFSATIALSADFRK 273
F EL +++ML + + + Q+ T T V + + K+ T T L +K
Sbjct: 441 FAELSQLLEMLGDSQYNPKRQTLIFSATLTLVHQAPARILHKKHTKKIDKTAKLDLFVQK 500
Query: 274 KLKHGSLKLKQSVNGLNSIETLSE 297
G K+ ++ETL+E
Sbjct: 501 IGMRGKPKVIDLTRNEATVETLTE 524
Score = 150 (57.9 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
P A+ + + + AW +L + +++++ LGF PTPIQ + A DI
Sbjct: 172 PKKAKTWMPEMHDHKADVTAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 231
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREK 103
+GAAETGSGKTLAF +P++ +L+ + K
Sbjct: 232 LGAAETGSGKTLAFAIPMIHTVLQWQVK 259
Score = 84 (34.6 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 255 KRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVS 314
KRQTL+FSAT+ L ++ H K + ++ ++ ++ GMR ++DLT
Sbjct: 459 KRQTLIFSATLTLVHQAPARILHK--KHTKKIDKTAKLDLFVQKIGMRGKPKVIDLTRNE 516
Query: 315 VLANKLEESFI 325
L E+ I
Sbjct: 517 ATVETLTETKI 527
>UNIPROTKB|G3V529 [details] [associations]
symbol:DDX24 "ATP-dependent RNA helicase DDX24"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL079302 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:13266 ChiTaRS:DDX24 ProteinModelPortal:G3V529 SMR:G3V529
Ensembl:ENST00000555054 ArrayExpress:G3V529 Bgee:G3V529
Uniprot:G3V529
Length = 816
Score = 327 (120.2 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 80/208 (38%), Positives = 112/208 (53%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 319 DKEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 377
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 378 LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 437
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQT----QTCVTVSSLQRK---KRQTLVFSATIALSA 269
HF EL +++ML N S QT T V + K+ T T L
Sbjct: 438 HFAELSQLLEML---NDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDL 494
Query: 270 DFRKKLKHGSLKLKQSVNGLNSIETLSE 297
+K G K+ ++ETL+E
Sbjct: 495 LMQKIGMRGKPKVIDLTRNEATVETLTE 522
Score = 150 (57.9 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
P A+ + + + AW +L + +++++ LGF PTPIQ + A DI
Sbjct: 131 PKKAKTWIPEVHDQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 190
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREK 103
+GAAETGSGKTLAF +P++ +L+ +++
Sbjct: 191 LGAAETGSGKTLAFAIPMIHAVLQWQKR 218
Score = 88 (36.0 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 255 KRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVS 314
KRQTLVFSAT+ L ++ H K + ++ ++ L ++ GMR ++DLT
Sbjct: 457 KRQTLVFSATLTLVHQAPARILHK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNE 514
Query: 315 VLANKLEESFI 325
L E+ I
Sbjct: 515 ATVETLTETKI 525
>UNIPROTKB|Q9GZR7 [details] [associations]
symbol:DDX24 "ATP-dependent RNA helicase DDX24"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003724 "RNA helicase activity"
evidence=NAS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 EMBL:AF214731
EMBL:AL136886 EMBL:AK025162 EMBL:BC008847 EMBL:BC009406
IPI:IPI00006987 RefSeq:NP_065147.1 UniGene:Hs.510328
ProteinModelPortal:Q9GZR7 SMR:Q9GZR7 DIP:DIP-47301N IntAct:Q9GZR7
MINT:MINT-1378437 STRING:Q9GZR7 PhosphoSite:Q9GZR7 DMDM:18202929
SWISS-2DPAGE:Q9GZR7 PaxDb:Q9GZR7 PeptideAtlas:Q9GZR7 PRIDE:Q9GZR7
DNASU:57062 Ensembl:ENST00000330836 GeneID:57062 KEGG:hsa:57062
UCSC:uc001ycj.3 CTD:57062 GeneCards:GC14M094517 HGNC:HGNC:13266
HPA:HPA002554 MIM:606181 neXtProt:NX_Q9GZR7 PharmGKB:PA27211
HOGENOM:HOG000290702 HOVERGEN:HBG104200 InParanoid:Q9GZR7
OMA:DQQEERR PhylomeDB:Q9GZR7 ChiTaRS:DDX24 GenomeRNAi:57062
NextBio:62861 ArrayExpress:Q9GZR7 Bgee:Q9GZR7 CleanEx:HS_DDX24
Genevestigator:Q9GZR7 GermOnline:ENSG00000089737 Uniprot:Q9GZR7
Length = 859
Score = 327 (120.2 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 80/208 (38%), Positives = 112/208 (53%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 362 DKEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 420
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 421 LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 480
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQT----QTCVTVSSLQRK---KRQTLVFSATIALSA 269
HF EL +++ML N S QT T V + K+ T T L
Sbjct: 481 HFAELSQLLEML---NDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDL 537
Query: 270 DFRKKLKHGSLKLKQSVNGLNSIETLSE 297
+K G K+ ++ETL+E
Sbjct: 538 LMQKIGMRGKPKVIDLTRNEATVETLTE 565
Score = 150 (57.9 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
P A+ + + + AW +L + +++++ LGF PTPIQ + A DI
Sbjct: 174 PKKAKTWIPEVHDQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 233
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREK 103
+GAAETGSGKTLAF +P++ +L+ +++
Sbjct: 234 LGAAETGSGKTLAFAIPMIHAVLQWQKR 261
Score = 88 (36.0 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 255 KRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVS 314
KRQTLVFSAT+ L ++ H K + ++ ++ L ++ GMR ++DLT
Sbjct: 500 KRQTLVFSATLTLVHQAPARILHK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNE 557
Query: 315 VLANKLEESFI 325
L E+ I
Sbjct: 558 ATVETLTETKI 568
>UNIPROTKB|A6H7B6 [details] [associations]
symbol:DDX24 "DDX24 protein" species:9913 "Bos taurus"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 CTD:57062
HOGENOM:HOG000290702 HOVERGEN:HBG104200 OMA:DQQEERR
GeneTree:ENSGT00550000074847 OrthoDB:EOG45TCMP EMBL:DAAA02053048
EMBL:BC146184 IPI:IPI00687716 RefSeq:NP_001092515.1 UniGene:Bt.9433
Ensembl:ENSBTAT00000004441 GeneID:529613 KEGG:bta:529613
InParanoid:A6H7B6 NextBio:20875064 Uniprot:A6H7B6
Length = 852
Score = 327 (120.2 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 77/202 (38%), Positives = 113/202 (55%)
Query: 100 EREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 159
+ E+AGK+ +E G PK L L++TPTRELA+QV H+ VAK +++ +VG
Sbjct: 361 DEEQAGKLKQELG--GSTVPPKRPLLGLVLTPTRELAVQVKQHVDAVAKFTSIKTAILVG 418
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR 219
GMST+KQ+R+L +PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GHF
Sbjct: 419 GMSTQKQQRMLNRQPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFA 478
Query: 220 ELQSIIDMLPMTNGSNEGQS---EQTQTCVTVSSLQ-RKKRQTLVFSATIALSADFRKKL 275
EL +++ML + + + Q+ T T V + + K+ T L +K
Sbjct: 479 ELSQLLEMLSDSQYNPKRQTLVFSATLTLVHQAPARILHKKHAKKMDKTAKLDLLMQKIG 538
Query: 276 KHGSLKLKQSVNGLNSIETLSE 297
G K+ ++ETL+E
Sbjct: 539 MRGKPKVIDLTRKEATVETLTE 560
Score = 149 (57.5 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 32/88 (36%), Positives = 50/88 (56%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
P A+ + + + AW +L + +++++ LGF PTPIQ + A DI
Sbjct: 173 PKKAKTWMPEMHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 232
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREK 103
+GAAETGSGKTLAF +P++ +L + K
Sbjct: 233 LGAAETGSGKTLAFAIPMIDAVLRWQVK 260
Score = 92 (37.4 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 239 SEQTQTCVTVSSLQ-RKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSE 297
+E +Q +S Q KRQTLVFSAT+ L ++ H K + ++ ++ L +
Sbjct: 478 AELSQLLEMLSDSQYNPKRQTLVFSATLTLVHQAPARILHK--KHAKKMDKTAKLDLLMQ 535
Query: 298 RAGMRANVAIVDLTNVSVLANKLEESFI 325
+ GMR ++DLT L E+ I
Sbjct: 536 KIGMRGKPKVIDLTRKEATVETLTETKI 563
>UNIPROTKB|F1NJ62 [details] [associations]
symbol:F1NJ62 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074847 EMBL:AADN02003663 EMBL:AADN02003664
EMBL:AADN02003665 EMBL:AADN02034739 IPI:IPI00571504
Ensembl:ENSGALT00000017692 Uniprot:F1NJ62
Length = 851
Score = 290 (107.1 bits), Expect = 4.9e-41, Sum P(3) = 4.9e-41
Identities = 58/122 (47%), Positives = 78/122 (63%)
Query: 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGT 180
K L L++TPTRELA+QV H+ VAK ++ +VGGM+ +KQER+L +PE+V+ T
Sbjct: 391 KRPLLGLVLTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIAT 450
Query: 181 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSE 240
PGRLWEL+ HL L L V+DEADRM+E GHF EL ++++L N S
Sbjct: 451 PGRLWELIKERHPHLSNLRQLRCLVIDEADRMVERGHFLELSQLLEVL---NDSQYNPKR 507
Query: 241 QT 242
QT
Sbjct: 508 QT 509
Score = 126 (49.4 bits), Expect = 4.9e-41, Sum P(3) = 4.9e-41
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
E L + + + AW +L + ++K++ LGF PTPIQ +P+A DI+GAAE
Sbjct: 182 EVLSTSTDHKADVSAWKDLFVPQPVLKALSSLGFSAPTPIQALTLPSAIRDNMDILGAAE 241
Query: 81 TGSGKTLAFGLPIMQRL 97
TG L P++ ++
Sbjct: 242 TGIN-LLTVSFPVISQI 257
Score = 79 (32.9 bits), Expect = 4.9e-41, Sum P(3) = 4.9e-41
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 255 KRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVS 314
KRQT VFSAT+ L ++ K + ++ +E L E+ G++ ++DLT
Sbjct: 506 KRQTFVFSATLTLVHQTPARILQK--KNAKKIDKKTKLEMLMEKVGIKGKPKVIDLTRKE 563
Query: 315 VLANKLEESFI 325
L E+ I
Sbjct: 564 ATVETLMETRI 574
>RGD|727929 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:727929 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH473982 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
CTD:57062 HOGENOM:HOG000290702 HOVERGEN:HBG104200 OMA:DQQEERR
GeneTree:ENSGT00550000074847 OrthoDB:EOG45TCMP EMBL:BC097262
EMBL:AY341876 IPI:IPI00200634 RefSeq:NP_954550.1 UniGene:Rn.100166
Ensembl:ENSRNOT00000012256 GeneID:373065 KEGG:rno:373065
UCSC:RGD:727929 InParanoid:Q6VEU8 NextBio:692388
Genevestigator:Q6VEU8 Uniprot:Q6VEU8
Length = 851
Score = 319 (117.4 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 77/207 (37%), Positives = 109/207 (52%)
Query: 100 EREKAGKMLEEKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
+ E+AGK+ +E ++ Y P+ L L++TPTRELA+QV H+ VAK + +
Sbjct: 356 DEEQAGKLKQELCDQIAVYKVHPRRPLLGLVLTPTRELAVQVRQHIDAVAKFTGINTAIL 415
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
VGGMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E H
Sbjct: 416 VGGMSTQKQQRMLNRHPEIVIATPGRLWELIKEKHPHLSNLRQLRCLVIDEADRMVEKDH 475
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQT----QTCVTVSSLQRK---KRQTLVFSATIALSAD 270
F EL +++ML N S + QT T V + K+ T L
Sbjct: 476 FAELSQLLEML---NDSQYNPNRQTLVFSATLTLVHQAPARILHKKHVKKMDKTAKLDLL 532
Query: 271 FRKKLKHGSLKLKQSVNGLNSIETLSE 297
+K G K+ ++ETL+E
Sbjct: 533 MQKIGMRGKPKVIDLTRNEGTVETLTE 559
Score = 153 (58.9 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 31/84 (36%), Positives = 49/84 (58%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
P A+ + + + AW +L + +++++ LGF PTPIQ + A DI
Sbjct: 174 PKKAKTWMPEVQDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 233
Query: 76 IGAAETGSGKTLAFGLPIMQRLLE 99
+GAAETGSGKTLAF +P++ +L+
Sbjct: 234 LGAAETGSGKTLAFAIPMIHSVLQ 257
Score = 79 (32.9 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 256 RQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSV 315
RQTLVFSAT+ L ++ H K + ++ ++ L ++ GMR ++DLT
Sbjct: 495 RQTLVFSATLTLVHQAPARILHK--KHVKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEG 552
Query: 316 LANKLEESFI 325
L E+ I
Sbjct: 553 TVETLTETKI 562
>UNIPROTKB|F1SCG7 [details] [associations]
symbol:LOC100620190 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
CTD:57062 OMA:DQQEERR GeneTree:ENSGT00550000074847 EMBL:CT990641
RefSeq:XP_003356831.1 UniGene:Ssc.51900 UniGene:Ssc.99043
Ensembl:ENSSSCT00000002742 GeneID:100157901 KEGG:ssc:100157901
Uniprot:F1SCG7
Length = 856
Score = 318 (117.0 bits), Expect = 1.0e-40, Sum P(2) = 1.0e-40
Identities = 78/207 (37%), Positives = 111/207 (53%)
Query: 100 EREKAGKMLEEKGEE-AEKYA-PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
+ E +G++ +E + A A PK L L++TPTRELA+QV H+ VAK ++ +
Sbjct: 359 DEEHSGELKQELNSKIATSEAHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAIL 418
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
VGGMST+KQ+R+L +PE+V+ TPGRLWEL+ + HL L L V+DEADRM+E GH
Sbjct: 419 VGGMSTQKQQRMLNRQPEIVIATPGRLWELVKEKQPHLSNLRQLRCLVIDEADRMVEKGH 478
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQT----QTCVTVSSLQRK---KRQTLVFSATIALSAD 270
F EL +++ML N S QT T V + K+ T L
Sbjct: 479 FAELSQLLEML---NDSQYNPKRQTLVFSATLTLVHQAPARILHKKHAKKIDKTAKLDLL 535
Query: 271 FRKKLKHGSLKLKQSVNGLNSIETLSE 297
+K G K+ ++ETL+E
Sbjct: 536 MQKIGMRGKPKVIDLTRNEATVETLTE 562
Score = 152 (58.6 bits), Expect = 1.0e-40, Sum P(2) = 1.0e-40
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 189 DVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 248
Query: 92 PIMQRLLE--EREKAGKMLEEKGEEAEK 117
P++ +L+ ++K +L G E+
Sbjct: 249 PMIHAVLQWQVKKKPTPVLSTTGAPPEE 276
Score = 90 (36.7 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 255 KRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVS 314
KRQTLVFSAT+ L ++ H K + ++ ++ L ++ GMR ++DLT
Sbjct: 497 KRQTLVFSATLTLVHQAPARILHK--KHAKKIDKTAKLDLLMQKIGMRGKPKVIDLTRNE 554
Query: 315 VLANKLEESFI 325
L E+ I
Sbjct: 555 ATVETLTETKI 565
>WB|WBGene00018890 [details] [associations]
symbol:F55F8.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003676 GO:GO:0040035 GO:GO:0040002 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K14805 HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847
OMA:VEEGYFA EMBL:FO081477 PIR:T29584 RefSeq:NP_491652.1
ProteinModelPortal:P91340 SMR:P91340 STRING:P91340 PaxDb:P91340
PRIDE:P91340 EnsemblMetazoa:F55F8.2a GeneID:172223
KEGG:cel:CELE_F55F8.2 UCSC:F55F8.2a CTD:172223 WormBase:F55F8.2a
InParanoid:P91340 NextBio:874573 ArrayExpress:P91340 Uniprot:P91340
Length = 746
Score = 424 (154.3 bits), Expect = 4.4e-39, P = 4.4e-39
Identities = 97/248 (39%), Positives = 143/248 (57%)
Query: 14 NGPDDAEEELVSEAEISTEFDAWNELRLHPL-LMKSIYRLGFKEPTPIQKACIPAAAHQG 72
NG ++ EA T+ AW + P ++++I ++GF EPT IQ A +PAA
Sbjct: 134 NGDTGKPKKSKKEASKKTDISAWKQFYFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDR 193
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132
+D++GAAETGSGKTLAFG+P++ RLLE + + ++ E E P RALI+ PT
Sbjct: 194 QDVLGAAETGSGKTLAFGIPLVARLLESSDDS-----QETESTEVRGP----RALIVAPT 244
Query: 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL-KARPELVVGTPGRLWELMSGG 191
REL +Q+ H+ + + IVGG++ KQER++ + RP++VV TPGRLW +M
Sbjct: 245 RELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQRPDIVVATPGRLWAMMQEA 304
Query: 192 E--KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVS 249
E + L E L V+DE DRM+E G+F EL I++ + E + E+ QT V +
Sbjct: 305 ETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHILNKI-----HEESEKEKLQTLVFSA 359
Query: 250 SLQRKKRQ 257
+L K Q
Sbjct: 360 TLTFAKAQ 367
Score = 119 (46.9 bits), Expect = 0.00052, P = 0.00052
Identities = 56/225 (24%), Positives = 104/225 (46%)
Query: 106 KMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
++LE + E + + RALI+ PTREL +Q+ H+ + + IVGG++
Sbjct: 217 RLLESSDDSQETESTEVRGPRALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQV 276
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
KQER++ + +V + + G + ++ EA+ +++L+ +
Sbjct: 277 KQERIISQQRPDIV--------VATPGRL---------WAMMQEAETGEFLAEWKDLKCL 319
Query: 225 IDMLPMTNGS-NEGQ-SEQTQTCVTV-SSLQRKKRQTLVFSATIALSADFRKKLKHGSLK 281
+ + T+ EG +E T + +++K QTLVFSAT+ A + + K
Sbjct: 320 V--VDETDRMVEEGYFAELTHILNKIHEESEKEKLQTLVFSATLTF-AKAQDVAEEEKKK 376
Query: 282 LKQSVNGLNSIETLSERAGMRANV-AIVDLTNVSVLANKLEESFI 325
K+ ++ I+ L + G+R N ++DLT A L E+ I
Sbjct: 377 AKE-LSSQQKIQRLIKLTGLRENKHKVIDLTRQMGTAGCLVEARI 420
>CGD|CAL0005900 [details] [associations]
symbol:MAK5 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0005900 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 EMBL:AACQ01000094 EMBL:AACQ01000093 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
RefSeq:XP_714899.1 RefSeq:XP_714962.1 ProteinModelPortal:Q59ZH9
STRING:Q59ZH9 GeneID:3643358 GeneID:3643454 KEGG:cal:CaO19.11024
KEGG:cal:CaO19.3540 Uniprot:Q59ZH9
Length = 782
Score = 419 (152.6 bits), Expect = 1.9e-38, P = 1.9e-38
Identities = 108/317 (34%), Positives = 176/317 (55%)
Query: 16 PDDAEEELVS--EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
PDD E L + E ++ + A+ + + +L FK+PTPIQK IP A GK
Sbjct: 185 PDDNEINLPNWQEGDLGSSISAYT--------LYGLSQLDFKKPTPIQKETIPIAL-SGK 235
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133
D+IG A TGSGKTLA+G+PI+++ ++ ++++ ++ + P G +I PTR
Sbjct: 236 DVIGKATTGSGKTLAYGIPILEKYIQSLN----LIKQNNKDKKINHPTG----IIFAPTR 287
Query: 134 ELALQVTDHLKEVAK--GINVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
ELA QV DHL ++AK ++ R +V I GG+S +KQ+RLL+ P ++V TPGR+ EL+ G
Sbjct: 288 ELAHQVVDHLNKLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVATPGRMLELVQG 347
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
+ L ++ VLDEADR++++GHF E + I+++ G N +S+ +
Sbjct: 348 DSELAKRLASIDIIVLDEADRLLQDGHFDEFEKILELF----GKNRPKSKSIEW------ 397
Query: 251 LQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVD 309
K QTLVFSAT + FRK +H K + ++ L+E+ + +VD
Sbjct: 398 ----KWQTLVFSATFSRDL-FRKLDRHQKGKSSSLMGNDEIVQLLNEKLKFKDKKPTLVD 452
Query: 310 LTNVSVLANKLEESFIE 326
+++ ++ E+ +E
Sbjct: 453 ANPKEIVSGQITEALVE 469
>POMBASE|SPBC4F6.07c [details] [associations]
symbol:SPBC4F6.07c "ATP-dependent RNA helicase Mak5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC4F6.07c
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702
OMA:VEEGYFA OrthoDB:EOG44J5S7 PIR:T40504 RefSeq:NP_596107.1
ProteinModelPortal:O74393 STRING:O74393 EnsemblFungi:SPBC4F6.07c.1
GeneID:2540874 KEGG:spo:SPBC4F6.07c NextBio:20801990 Uniprot:O74393
Length = 648
Score = 239 (89.2 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 46/111 (41%), Positives = 73/111 (65%)
Query: 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPG 182
+++AL++ PTRELA Q+ H + + N+RV+ I GG++ +KQ+RLL P +VV TPG
Sbjct: 192 YVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPG 251
Query: 183 RLWELMSGGEKHLV-ELHTLSFFVLDEADRMIENGHFRELQSIIDML--PM 230
RLW +++ E +L + VLDEADR+++ HF EL ++++L PM
Sbjct: 252 RLWSVIN--ENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPM 300
Score = 164 (62.8 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 39/96 (40%), Positives = 54/96 (56%)
Query: 4 TNCGTVVVVSNGPDDAE-EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQK 62
T+ G+ V N + + EE + AW L P ++ S+ + GF +P PIQ
Sbjct: 91 TSLGSKVTSKNYNEFSTLEEEDEHNSHGVDVSAWAHFSLSPEMLGSLSKAGFSKPMPIQS 150
Query: 63 ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLL 98
IP A+ G DIIG A+TGSGKTLAFG+PI++ L
Sbjct: 151 LVIPEASI-GFDIIGKADTGSGKTLAFGIPILEHCL 185
Score = 53 (23.7 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 255 KRQTLVFSATI--ALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTN 312
+RQT +FSAT L +K +K G++ K + + +E + + +D
Sbjct: 303 QRQTFIFSATFDEGLQQRLKKNMK-GNITEKYN----SPMENMLKEVRFFGKPKFLDANP 357
Query: 313 VSVLANKLEESFIE 326
S +A+++ E IE
Sbjct: 358 QSAVASRVLEGLIE 371
Score = 37 (18.1 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 108 LEE-KGEEAEKYAPKGHLRALI 128
LEE +G + KY PKG ++ +I
Sbjct: 30 LEEIEGVDI-KYQPKGAMKEVI 50
>SGD|S000000346 [details] [associations]
symbol:MAK5 "Essential nucleolar protein" species:4932
"Saccharomyces cerevisiae" [GO:0000466 "maturation of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=IMP]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000000346 GO:GO:0005524 GO:GO:0005730
EMBL:BK006936 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000463 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000466 KO:K14805
HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847 EMBL:X78937
OrthoDB:EOG44J5S7 EMBL:Z36011 PIR:S46011 RefSeq:NP_009700.1
ProteinModelPortal:P38112 SMR:P38112 DIP:DIP-6337N IntAct:P38112
MINT:MINT-612928 STRING:P38112 PaxDb:P38112 PeptideAtlas:P38112
EnsemblFungi:YBR142W GeneID:852439 KEGG:sce:YBR142W CYGD:YBR142w
OMA:HLPRAAD NextBio:971336 Genevestigator:P38112 GermOnline:YBR142W
Uniprot:P38112
Length = 773
Score = 368 (134.6 bits), Expect = 6.1e-33, P = 6.1e-33
Identities = 103/302 (34%), Positives = 162/302 (53%)
Query: 36 WNELR-LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
W L L +++S+ L F PT IQK IP QG D++G A TGSGKTLA+G+PI+
Sbjct: 172 WTNLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIM-QGVDVMGKASTGSGKTLAYGIPIV 230
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR- 153
++L+ +K ++ P +LI TPTRELA QVTDHLK++ + + +
Sbjct: 231 EKLISN-------FSQKNKK-----PI----SLIFTPTRELAHQVTDHLKKICEPVLAKS 274
Query: 154 ---VVPIVGGMSTEKQERLLKA--RPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
++ + GG+S +KQ+RLLK ++V+ TPGR EL+ + ++ +LDE
Sbjct: 275 QYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVNTLILDE 334
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++++GHF E + II L + N SE + K QTL+FSAT ++
Sbjct: 335 ADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSS----------KIWQTLIFSATFSID 384
Query: 269 ADFRKKLKHGSLK---LKQSVNGLNS-IETLSERAGMRANVAIVDLTNVSVLANKLEESF 324
F K +K K + + LN+ I+ L + + I+D S ++++++ES
Sbjct: 385 L-FDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSSQIKESL 443
Query: 325 IE 326
IE
Sbjct: 444 IE 445
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 366 (133.9 bits), Expect = 1.2e-32, P = 1.2e-32
Identities = 88/243 (36%), Positives = 147/243 (60%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
+ I +WNE ++ I ++G+KEPTPIQ+ IP Q +DIIG AETGS
Sbjct: 384 IKGGRIPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGL-QNRDIIGVAETGS 442
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKTLAF +P++ + + K+ E+ E+ ++ P A+I+ PTRELA Q+ +
Sbjct: 443 GKTLAFLIPLLSWI----QSLPKI--ERLEDVDQ-GPY----AIIMAPTRELAQQIEEET 491
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
+ + + +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++
Sbjct: 492 TKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTY 548
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFS 262
VLDEADRMI+ G ++Q I++ +P+TN + + + +T + + +KK RQT++F+
Sbjct: 549 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFT 608
Query: 263 ATI 265
AT+
Sbjct: 609 ATM 611
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 319 (117.4 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 70/195 (35%), Positives = 122/195 (62%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L P +++++ G++EPTPIQ+ IPA +G+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q L+ + A KG P +RALI+TPTRELA Q+ +++++ +K +N+R
Sbjct: 61 QHLITRQPHA------KGRR-----P---VRALILTPTRELAAQIGENVRDYSKYLNIRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q L+ +++V TPGRL +L ++ V+L + VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLE---HQNAVKLDQVEILVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLP 229
G +++ ++ LP
Sbjct: 164 MGFIHDIRRVLTKLP 178
Score = 48 (22.0 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 255 KRQTLVFSATIA--LSADFRKKLKHGSLKLK 283
KRQ L+FSAT + + A +KL H L+++
Sbjct: 180 KRQNLLFSATFSDDIKA-LAEKLLHNPLEIE 209
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 314 (115.6 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 74/195 (37%), Positives = 119/195 (61%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L+ L+ ++ LG+++PTPIQ IPA + +D++ A+TG+GKT AF LPI+
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTK-QDVMAGAQTGTGKTAAFALPIL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q L M + + + A K +RAL++ PTRELALQV + AKG ++RV
Sbjct: 61 QLL---------MADNQSDHAAKA-----IRALVLVPTRELALQVQQSFVKYAKGTDIRV 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
GG+S E Q+ + A ++++ TPGRL + + G +L +L+TL F DEADRM++
Sbjct: 107 GIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVF---DEADRMLD 163
Query: 215 NGHFRELQSIIDMLP 229
G E+Q+++ +P
Sbjct: 164 MGFMDEIQAVLKQVP 178
Score = 44 (20.5 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 255 KRQTLVFSATIALSA-DFRKKL 275
+RQTL+FSAT+ S F K L
Sbjct: 180 QRQTLLFSATLDDSIFSFSKNL 201
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 314 (115.6 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 74/195 (37%), Positives = 119/195 (61%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L+ L+ ++ LG+++PTPIQ IPA + +D++ A+TG+GKT AF LPI+
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTK-QDVMAGAQTGTGKTAAFALPIL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q L M + + + A K +RAL++ PTRELALQV + AKG ++RV
Sbjct: 61 QLL---------MADNQSDHAAKA-----IRALVLVPTRELALQVQQSFVKYAKGTDIRV 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
GG+S E Q+ + A ++++ TPGRL + + G +L +L+TL F DEADRM++
Sbjct: 107 GIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVF---DEADRMLD 163
Query: 215 NGHFRELQSIIDMLP 229
G E+Q+++ +P
Sbjct: 164 MGFMDEIQAVLKQVP 178
Score = 44 (20.5 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 255 KRQTLVFSATIALSA-DFRKKL 275
+RQTL+FSAT+ S F K L
Sbjct: 180 QRQTLLFSATLDDSIFSFSKNL 201
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 311 (114.5 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 74/196 (37%), Positives = 116/196 (59%)
Query: 37 NELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
+E + LL I R+ G+K+PTPIQK CIPA + G D++G A+TG+GKT AF LPI
Sbjct: 2 SEFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALIN-GNDLLGIAQTGTGKTAAFSLPI 60
Query: 94 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153
+ + R K ++ K + R+LI+TPTRELA Q+ ++ + + G+ ++
Sbjct: 61 INKF--GRNK----IDIKAKST---------RSLILTPTRELASQIMQNIDDYSDGLGLK 105
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+ GG+ + Q ++ +++V TPGRL +L+ G+ + L FVLDEAD M+
Sbjct: 106 TKVVYGGVGRQAQVDSIELGLDILVATPGRLLDLIETGD---INFKALEVFVLDEADTML 162
Query: 214 ENGHFRELQSIIDMLP 229
+ G F+++QSII LP
Sbjct: 163 DMGFFKDVQSIISKLP 178
Score = 46 (21.3 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 248 VSSLQRKKRQTLVFSATI 265
+S L K RQTL+FSAT+
Sbjct: 174 ISKLP-KSRQTLLFSATM 190
>FB|FBgn0034496 [details] [associations]
symbol:CG9143 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14805 GeneTree:ENSGT00550000074847
OMA:DAYLYYI EMBL:BT010296 RefSeq:NP_611467.1 UniGene:Dm.22095
SMR:Q6NQY9 STRING:Q6NQY9 EnsemblMetazoa:FBtr0086304 GeneID:37296
KEGG:dme:Dmel_CG9143 UCSC:CG9143-RA FlyBase:FBgn0034496
InParanoid:Q6NQY9 OrthoDB:EOG4VQ84N GenomeRNAi:37296 NextBio:802980
Uniprot:Q6NQY9
Length = 813
Score = 333 (122.3 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 87/222 (39%), Positives = 125/222 (56%)
Query: 104 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST 163
+G EE E + + L L++TPTRELA+QV +HL AK +RV I GG++
Sbjct: 321 SGASDEESDAEEQAQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAV 380
Query: 164 EKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQS 223
KQER+L+ P++VV TPGRLWEL + G +HL ++ +SF V+DE DRM+E GHF EL+S
Sbjct: 381 AKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRS 440
Query: 224 IIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK-- 281
++ +L S+E + Q Q V ++L TLV D +K G
Sbjct: 441 LLKVL----NSDEQKKHQRQNFVYSATL------TLVHDLP-----DHMQKRNVGKRPKF 485
Query: 282 LKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
+KQ+V+ IE+L E G+ + IVD+T+ A L ES
Sbjct: 486 VKQTVD--QKIESLIEELGI-SQPKIVDITSSQQTAQTLTES 524
Score = 198 (74.8 bits), Expect = 7.2e-13, P = 7.2e-13
Identities = 57/170 (33%), Positives = 90/170 (52%)
Query: 17 DDAEEELV--SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKD 74
D+ ELV S E + + AWN L + +++++ GFK PT IQ +PAA H KD
Sbjct: 197 DEEAPELVPISTGE-AEDMSAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKD 255
Query: 75 IIGAAETGSGKTLAFGLPIMQRLLEEREK---AG--KMLEEKGEEAEKYAPKGHLRALII 129
I+GAAETGSGKTLAFG+P++ ++E +++ +G K + KG++ E A + L
Sbjct: 256 ILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTP--- 312
Query: 130 TPTREL--ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELV 177
P EL +D + + P+ G + T +E ++ + LV
Sbjct: 313 -PPEELDHVSGASDEESDAEEQAQRVQTPLYGLVLTPTRELAVQVKNHLV 361
Score = 42 (19.8 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 94 MQRLLEEREKAGKMLEEKGEEAEK 117
MQ+L E+REK ++ ++K + ++
Sbjct: 130 MQKLREKREKRKELRKQKKSKGKE 153
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 222 (83.2 bits), Expect = 9.7e-31, Sum P(3) = 9.7e-31
Identities = 44/106 (41%), Positives = 70/106 (66%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
++AL++ PTRELA+QV++ L ++ VRV+PI GG E+Q R LK P ++VGTPGR
Sbjct: 71 VQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGR 130
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+ + ++ G L +HT+ VLDEAD M+ G ++++I+ +P
Sbjct: 131 IIDHINRGTLRLEHVHTV---VLDEADEMLNMGFIEDIEAILSHVP 173
Score = 160 (61.4 bits), Expect = 9.7e-31, Sum P(3) = 9.7e-31
Identities = 32/62 (51%), Positives = 46/62 (74%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L +MK+I R+GF+E TPIQ IP + Q KD+IG A+TG+GKT AFG+PI++
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSL-QNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 96 RL 97
++
Sbjct: 63 KV 64
Score = 41 (19.5 bits), Expect = 9.7e-31, Sum P(3) = 9.7e-31
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 255 KRQTLVFSATI 265
+RQTL+FSAT+
Sbjct: 175 ERQTLLFSATM 185
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 346 (126.9 bits), Expect = 1.5e-30, P = 1.5e-30
Identities = 92/273 (33%), Positives = 154/273 (56%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W+E L L++ + R+G+KEPTPIQ+A IP A Q +D+IG A TGSGKT AF LP++
Sbjct: 347 SWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAM-QSRDLIGVAVTGSGKTAAFLLPLL 405
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ E ++E E + P A+++ PTRELA Q+ K+ + + V
Sbjct: 406 CYIAELPR-----IDEF-EWRKNDGPY----AIVLAPTRELAQQIEIEAKKFTEPLGFNV 455
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V IVGG S E+Q L+ E+++ TPGRL + + E+ ++ L + ++DEADRMI+
Sbjct: 456 VSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI---ERRMLVLSQCCYVIMDEADRMID 512
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVT--VSSLQRKKRQTLVFSATIALSAD-- 270
G + I+D LP+TN + + + + ++ + S R RQT++++AT+ + +
Sbjct: 513 LGFEEPVNKILDALPVTNEKPDTEEAEDSSAMSRHLGSKDRY-RQTMMYTATMPTAVERI 571
Query: 271 FRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA 303
RK L+ ++ S +++T+ +R M A
Sbjct: 572 ARKYLRRPAIVTIGSAG--EAVDTVEQRVEMIA 602
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 346 (126.9 bits), Expect = 1.6e-30, P = 1.6e-30
Identities = 85/232 (36%), Positives = 139/232 (59%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L P +++ I + G+K+PTPIQ+ IP Q +DIIG AETGSGKT AF +P++
Sbjct: 380 WKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAAFLIPLLV 438
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ K ++ E++++ P A+I+ PTRELA Q+ + + K + +R V
Sbjct: 439 -WITTLPKIDRI-----EDSDQ-GPY----AIILAPTRELAQQIEEETIKFGKPLGIRTV 487
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VLDEADRMI+
Sbjct: 488 AVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVLDEADRMIDM 544
Query: 216 GHFRELQSIIDMLPMTNGSNE-GQSEQTQTCV-TVSSLQRKKRQTLVFSATI 265
G ++Q I++ +P+TN + +E + + S + K RQT++F+AT+
Sbjct: 545 GFEPDVQKILEYIPVTNQKPDTDDAEDPEKMMQNFESGKHKYRQTVMFTATM 596
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 346 (126.9 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 86/240 (35%), Positives = 143/240 (59%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
+I +W + L P +++ I + G+KEPTPIQ+ IP Q +DIIG AETGSGKT
Sbjct: 384 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTA 442
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
AF +P++ + K ++ EE+++ P A+I+ PTRELA Q+ + +
Sbjct: 443 AFLIPLLV-WITTLPKIDRI-----EESDQ-GPY----AIILAPTRELAQQIEEETIKFG 491
Query: 148 KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 207
K + +R V ++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VLD
Sbjct: 492 KPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVLD 548
Query: 208 EADRMIENGHFRELQSIIDMLPMTNGSNE-GQSEQTQTCVT-VSSLQRKKRQTLVFSATI 265
EADRMI+ G ++Q I++ +P++N + ++E + + S + K RQT++F+AT+
Sbjct: 549 EADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATM 608
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 346 (126.9 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 86/240 (35%), Positives = 143/240 (59%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
+I +W + L P +++ I + G+KEPTPIQ+ IP Q +DIIG AETGSGKT
Sbjct: 385 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTA 443
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
AF +P++ + K ++ EE+++ P A+I+ PTRELA Q+ + +
Sbjct: 444 AFLIPLLV-WITTLPKIDRI-----EESDQ-GPY----AIILAPTRELAQQIEEETIKFG 492
Query: 148 KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 207
K + +R V ++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VLD
Sbjct: 493 KPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVLD 549
Query: 208 EADRMIENGHFRELQSIIDMLPMTNGSNE-GQSEQTQTCVT-VSSLQRKKRQTLVFSATI 265
EADRMI+ G ++Q I++ +P++N + ++E + + S + K RQT++F+AT+
Sbjct: 550 EADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATM 609
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 346 (126.9 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 86/240 (35%), Positives = 143/240 (59%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
+I +W + L P +++ I + G+KEPTPIQ+ IP Q +DIIG AETGSGKT
Sbjct: 385 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTA 443
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
AF +P++ + K ++ EE+++ P A+I+ PTRELA Q+ + +
Sbjct: 444 AFLIPLLV-WITTLPKIDRI-----EESDQ-GPY----AIILAPTRELAQQIEEETIKFG 492
Query: 148 KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 207
K + +R V ++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VLD
Sbjct: 493 KPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVLD 549
Query: 208 EADRMIENGHFRELQSIIDMLPMTNGSNE-GQSEQTQTCVT-VSSLQRKKRQTLVFSATI 265
EADRMI+ G ++Q I++ +P++N + ++E + + S + K RQT++F+AT+
Sbjct: 550 EADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATM 609
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 346 (126.9 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 86/240 (35%), Positives = 143/240 (59%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
+I +W + L P +++ I + G+KEPTPIQ+ IP Q +DIIG AETGSGKT
Sbjct: 385 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTA 443
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
AF +P++ + K ++ EE+++ P A+I+ PTRELA Q+ + +
Sbjct: 444 AFLIPLLV-WITTLPKIDRI-----EESDQ-GPY----AIILAPTRELAQQIEEETIKFG 492
Query: 148 KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 207
K + +R V ++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VLD
Sbjct: 493 KPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVLD 549
Query: 208 EADRMIENGHFRELQSIIDMLPMTNGSNE-GQSEQTQTCVT-VSSLQRKKRQTLVFSATI 265
EADRMI+ G ++Q I++ +P++N + ++E + + S + K RQT++F+AT+
Sbjct: 550 EADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATM 609
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 308 (113.5 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 78/204 (38%), Positives = 116/204 (56%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
+ S+ ++ EL + L + LG+ PTP+Q A IPA G+D++ A TGSGKT
Sbjct: 3 QASSSVASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVL-SGRDVLAGANTGSGKTA 61
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
AF LP++QRL E + A+K A G +R L++ PTRELA QV D A
Sbjct: 62 AFALPLLQRLSEAKS------------ADKSA--GVVRCLVLVPTRELAQQVADSFLSYA 107
Query: 148 KGIN--VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
N +++V GG+S Q + L+A +++V TPGRL +L++ + ++L +S FV
Sbjct: 108 SHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPGRLLDLLAS---NALKLTQVSAFV 164
Query: 206 LDEADRMIENGHFRELQSIIDMLP 229
LDEADRM+ G EL+ ++ LP
Sbjct: 165 LDEADRMLSLGFTEELEQVLAALP 188
Score = 42 (19.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 248 VSSLQRKKRQTLVFSAT 264
+++L R+K QTL+FSAT
Sbjct: 184 LAALPRQK-QTLLFSAT 199
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 308 (113.5 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 78/204 (38%), Positives = 116/204 (56%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
+ S+ ++ EL + L + LG+ PTP+Q A IPA G+D++ A TGSGKT
Sbjct: 3 QASSSVASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVL-SGRDVLAGANTGSGKTA 61
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
AF LP++QRL E + A+K A G +R L++ PTRELA QV D A
Sbjct: 62 AFALPLLQRLSEAKS------------ADKSA--GVVRCLVLVPTRELAQQVADSFLSYA 107
Query: 148 KGIN--VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
N +++V GG+S Q + L+A +++V TPGRL +L++ + ++L +S FV
Sbjct: 108 SHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPGRLLDLLAS---NALKLTQVSAFV 164
Query: 206 LDEADRMIENGHFRELQSIIDMLP 229
LDEADRM+ G EL+ ++ LP
Sbjct: 165 LDEADRMLSLGFTEELEQVLAALP 188
Score = 42 (19.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 248 VSSLQRKKRQTLVFSAT 264
+++L R+K QTL+FSAT
Sbjct: 184 LAALPRQK-QTLLFSAT 199
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 305 (112.4 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 68/183 (37%), Positives = 110/183 (60%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
L+K++ G+K TPIQ+ IP QG D++ +A+TG+GKT AF LPI+ + + A
Sbjct: 12 LLKAVKACGYKNLTPIQQEAIPVI-RQGVDLLASAQTGTGKTAAFSLPILDAIAKANHAA 70
Query: 105 GKMLEEKGEE-AEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMS 162
E AE+ + G +RALI+TPTRELA QV D++K+ ++ + ++ + GG
Sbjct: 71 KSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGK 130
Query: 163 TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 222
Q ++LK +++V TPGRL E ++ V+L + F VLDEADRM++ G +++
Sbjct: 131 MASQTKMLKQGLDVLVATPGRLLEHLA---LRNVDLSQVKFLVLDEADRMLDMGFLTDIE 187
Query: 223 SII 225
++
Sbjct: 188 KLL 190
Score = 45 (20.9 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 253 RKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVN 287
+ K QTL+FSAT + D K L + LK ++++
Sbjct: 194 KHKHQTLMFSATFS---DRVKSLANQLLKSPKTIS 225
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 305 (112.4 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 75/193 (38%), Positives = 112/193 (58%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++L L L+ ++ LG PTPIQ+ IP QGKD++ A+TG+GKT AFGLP++Q
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVL-QGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
R +E+ + E +E +RAL++ PTRELA QV D L+ AKG +++V
Sbjct: 67 RFIEQPWQR----EANSKE---------IRALVLVPTRELAQQVLDSLQAYAKGTELKIV 113
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG S + Q L+ ++++ TPGRL L K L L + VLDEADRM++
Sbjct: 114 AVYGGTSMKVQLNHLRGGVDILIATPGRL--LDHAHVKSLF-LGKVEVLVLDEADRMLDM 170
Query: 216 GHFRELQSIIDML 228
G +LQ ++ L
Sbjct: 171 GFMPDLQRVLRRL 183
Score = 37 (18.1 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 251 LQRKKRQTLVFSATIALSADFRKKLK 276
LQR R+ T+ SA F K+K
Sbjct: 176 LQRVLRRLSPLRQTLFFSATFDSKIK 201
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 305 (112.4 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 75/193 (38%), Positives = 112/193 (58%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++L L L+ ++ LG PTPIQ+ IP QGKD++ A+TG+GKT AFGLP++Q
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVL-QGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
R +E+ + E +E +RAL++ PTRELA QV D L+ AKG +++V
Sbjct: 67 RFIEQPWQR----EANSKE---------IRALVLVPTRELAQQVLDSLQAYAKGTELKIV 113
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG S + Q L+ ++++ TPGRL L K L L + VLDEADRM++
Sbjct: 114 AVYGGTSMKVQLNHLRGGVDILIATPGRL--LDHAHVKSLF-LGKVEVLVLDEADRMLDM 170
Query: 216 GHFRELQSIIDML 228
G +LQ ++ L
Sbjct: 171 GFMPDLQRVLRRL 183
Score = 37 (18.1 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 251 LQRKKRQTLVFSATIALSADFRKKLK 276
LQR R+ T+ SA F K+K
Sbjct: 176 LQRVLRRLSPLRQTLFFSATFDSKIK 201
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 301 (111.0 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 71/197 (36%), Positives = 117/197 (59%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
F ++ L L L+++I G+ EPTP+Q+ IP Q +D++ A+TG+GKT F LP
Sbjct: 9 FMSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVIL-QARDVMVTAQTGTGKTAGFTLP 67
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
++QRL R + + K +RALI+TPTRELA+QV + ++ K + +
Sbjct: 68 LLQRLFVSRPPLQR------------SAKPVIRALILTPTRELAVQVFECVRAYGKYLPL 115
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ + GG+S + Q L+ +++V TPGRL +L++ G ++ L + FFVLDEADRM
Sbjct: 116 KATVVHGGVSIKPQINHLRRGVDILVATPGRLLDLVNQG---VLNLSRVEFFVLDEADRM 172
Query: 213 IENGHFRELQSIIDMLP 229
++ G +++ I+ +LP
Sbjct: 173 LDMGFLPDIRRILKLLP 189
Score = 40 (19.1 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 248 VSSLQRKKRQTLVFSATIALSA-DFRKKLKH 277
+ L + RQ L+FSAT + + KL H
Sbjct: 184 ILKLLPESRQNLLFSATFSKEIKELTDKLLH 214
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 301 (111.0 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 71/197 (36%), Positives = 117/197 (59%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
F ++ L L L+++I G+ EPTP+Q+ IP Q +D++ A+TG+GKT F LP
Sbjct: 9 FMSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVIL-QARDVMVTAQTGTGKTAGFTLP 67
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
++QRL R + + K +RALI+TPTRELA+QV + ++ K + +
Sbjct: 68 LLQRLFVSRPPLQR------------SAKPVIRALILTPTRELAVQVFECVRAYGKYLPL 115
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ + GG+S + Q L+ +++V TPGRL +L++ G ++ L + FFVLDEADRM
Sbjct: 116 KATVVHGGVSIKPQINHLRRGVDILVATPGRLLDLVNQG---VLNLSRVEFFVLDEADRM 172
Query: 213 IENGHFRELQSIIDMLP 229
++ G +++ I+ +LP
Sbjct: 173 LDMGFLPDIRRILKLLP 189
Score = 40 (19.1 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 248 VSSLQRKKRQTLVFSATIALSA-DFRKKLKH 277
+ L + RQ L+FSAT + + KL H
Sbjct: 184 ILKLLPESRQNLLFSATFSKEIKELTDKLLH 214
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 330 (121.2 bits), Expect = 3.2e-29, P = 3.2e-29
Identities = 84/232 (36%), Positives = 133/232 (57%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
WNE ++ L+ I +LG++EPT +Q+A IP A + +D++G AETGSGKTLAF +P++
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKK-RDVVGVAETGSGKTLAFLIPVLN 228
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L E K E+ E P G LI+ PTRELALQ+T ++ K + +V+
Sbjct: 229 YILSIDENYLKY-EKISNE-----PVG----LILAPTRELALQITKEAEKFCKKLGYQVL 278
Query: 156 PIVGGMSTEKQ-ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
PI+GG + ++ + L+V TPGRL + + E+ +V+L V+DEADRMI+
Sbjct: 279 PIIGGHHYQDTINKIDQTGVHLIVATPGRLVDSI---ERKIVDLSKCYCLVMDEADRMID 335
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G ++L ++D LP +Q + + +KR T++F+ATI+
Sbjct: 336 MGFEKDLNKVLDKLPT--------EKQLSSTIDGRIFHLEKRSTMMFTATIS 379
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 330 (121.2 bits), Expect = 3.2e-29, P = 3.2e-29
Identities = 84/232 (36%), Positives = 133/232 (57%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
WNE ++ L+ I +LG++EPT +Q+A IP A + +D++G AETGSGKTLAF +P++
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKK-RDVVGVAETGSGKTLAFLIPVLN 228
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L E K E+ E P G LI+ PTRELALQ+T ++ K + +V+
Sbjct: 229 YILSIDENYLKY-EKISNE-----PVG----LILAPTRELALQITKEAEKFCKKLGYQVL 278
Query: 156 PIVGGMSTEKQ-ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
PI+GG + ++ + L+V TPGRL + + E+ +V+L V+DEADRMI+
Sbjct: 279 PIIGGHHYQDTINKIDQTGVHLIVATPGRLVDSI---ERKIVDLSKCYCLVMDEADRMID 335
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G ++L ++D LP +Q + + +KR T++F+ATI+
Sbjct: 336 MGFEKDLNKVLDKLPT--------EKQLSSTIDGRIFHLEKRSTMMFTATIS 379
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 333 (122.3 bits), Expect = 3.2e-29, P = 3.2e-29
Identities = 87/233 (37%), Positives = 128/233 (54%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W E +L L+K++ R G+K+P+PIQ A IP Q +D+IG AETGSGKT AF LP++
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQ-RDVIGIAETGSGKTAAFVLPML 372
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ L EE E P A+++ PTRELA Q+ + + A + RV
Sbjct: 373 AYI--------SRLPPMSEENETEGPY----AVVMAPTRELAQQIEEETVKFAHYLGFRV 420
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
IVGG S E+Q + E+V+ TPGRL + + E+ L+ ++ VLDEADRMI+
Sbjct: 421 TSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCL---ERRYAVLNQCNYVVLDEADRMID 477
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK--RQTLVFSATI 265
G ++ ++D +P +N E + E+ L KK R T +FSAT+
Sbjct: 478 MGFEPQVAGVLDAMPSSNLKPENEEEE---------LDEKKIYRTTYMFSATM 521
>UNIPROTKB|F5GYL3 [details] [associations]
symbol:DDX24 "ATP-dependent RNA helicase DDX24"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL079302 GO:GO:0008026 HGNC:HGNC:13266 ChiTaRS:DDX24
IPI:IPI00911118 ProteinModelPortal:F5GYL3 SMR:F5GYL3
Ensembl:ENST00000544005 ArrayExpress:F5GYL3 Bgee:F5GYL3
Uniprot:F5GYL3
Length = 609
Score = 327 (120.2 bits), Expect = 8.1e-29, P = 8.1e-29
Identities = 80/208 (38%), Positives = 112/208 (53%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 112 DKEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 170
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 171 LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 230
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQT----QTCVTVSSLQRK---KRQTLVFSATIALSA 269
HF EL +++ML N S QT T V + K+ T T L
Sbjct: 231 HFAELSQLLEML---NDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDL 287
Query: 270 DFRKKLKHGSLKLKQSVNGLNSIETLSE 297
+K G K+ ++ETL+E
Sbjct: 288 LMQKIGMRGKPKVIDLTRNEATVETLTE 315
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 329 (120.9 bits), Expect = 8.6e-29, P = 8.6e-29
Identities = 76/232 (32%), Positives = 133/232 (57%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E + +++ +G+ EPTPIQ+ IP Q +D+IG AETGSGKT AF LP++
Sbjct: 303 WEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGL-QNRDVIGVAETGSGKTAAFLLPLLV 361
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ KM ++ + YA +I+ PTRELA Q+ + + K + ++ V
Sbjct: 362 WITS----LPKMERQEHRDLGPYA-------IIMAPTRELAQQIEEETNKFGKLLGIKTV 410
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
++GG S E Q L+ E+V+ TPGRL +++ ++L+ L+ ++ +LDEADRM++
Sbjct: 411 SVIGGASREDQGMKLRMGVEVVIATPGRLLDVLEN--RYLL-LNQCTYVILDEADRMLDM 467
Query: 216 GHFRELQSIIDMLPMTNGSNE-GQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G ++Q +++ +P TN + + + + + S + K RQT++F+AT++
Sbjct: 468 GFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMS 519
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 319 (117.4 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 73/192 (38%), Positives = 118/192 (61%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W + + ++ S+ + G+++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ ++++R LEE GE G + A+I+TPTRELALQ+T K+ +K + +RV
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V + GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD 536
Query: 215 NGHFRELQSIID 226
G ++ I+D
Sbjct: 537 MGFEPQVMRIVD 548
Score = 40 (19.1 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 253 RKKRQTLVFSATI--ALSADFRKKL 275
R RQT++FSAT A+ A R+ L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRIL 575
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 319 (117.4 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 73/192 (38%), Positives = 118/192 (61%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W + + ++ S+ + G+++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ ++++R LEE GE G + A+I+TPTRELALQ+T K+ +K + +RV
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V + GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD 536
Query: 215 NGHFRELQSIID 226
G ++ I+D
Sbjct: 537 MGFEPQVMRIVD 548
Score = 40 (19.1 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 253 RKKRQTLVFSATI--ALSADFRKKL 275
R RQT++FSAT A+ A R+ L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRIL 575
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 319 (117.4 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 73/192 (38%), Positives = 118/192 (61%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W + + ++ S+ + G+++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ ++++R LEE GE G + A+I+TPTRELALQ+T K+ +K + +RV
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V + GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD 536
Query: 215 NGHFRELQSIID 226
G ++ I+D
Sbjct: 537 MGFEPQVMRIVD 548
Score = 40 (19.1 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 253 RKKRQTLVFSATI--ALSADFRKKL 275
R RQT++FSAT A+ A R+ L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRIL 575
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 319 (117.4 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 73/192 (38%), Positives = 118/192 (61%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W + + ++ S+ + G+++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ ++++R LEE GE G + A+I+TPTRELALQ+T K+ +K + +RV
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V + GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD 536
Query: 215 NGHFRELQSIID 226
G ++ I+D
Sbjct: 537 MGFEPQVMRIVD 548
Score = 40 (19.1 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 253 RKKRQTLVFSATI--ALSADFRKKL 275
R RQT++FSAT A+ A R+ L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRIL 575
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 319 (117.4 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 73/192 (38%), Positives = 118/192 (61%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W + + ++ S+ + G+++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ ++++R LEE GE G + A+I+TPTRELALQ+T K+ +K + +RV
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V + GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD 536
Query: 215 NGHFRELQSIID 226
G ++ I+D
Sbjct: 537 MGFEPQVMRIVD 548
Score = 40 (19.1 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 253 RKKRQTLVFSATI--ALSADFRKKL 275
R RQT++FSAT A+ A R+ L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRIL 575
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 319 (117.4 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 73/192 (38%), Positives = 118/192 (61%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W + + ++ S+ + G+++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ ++++R LEE GE G + A+I+TPTRELALQ+T K+ +K + +RV
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V + GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD 536
Query: 215 NGHFRELQSIID 226
G ++ I+D
Sbjct: 537 MGFEPQVMRIVD 548
Score = 40 (19.1 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 253 RKKRQTLVFSATI--ALSADFRKKL 275
R RQT++FSAT A+ A R+ L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRIL 575
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 319 (117.4 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 73/192 (38%), Positives = 118/192 (61%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W + + ++ S+ + G+++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ ++++R LEE GE G + A+I+TPTRELALQ+T K+ +K + +RV
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V + GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD 536
Query: 215 NGHFRELQSIID 226
G ++ I+D
Sbjct: 537 MGFEPQVMRIVD 548
Score = 40 (19.1 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 253 RKKRQTLVFSATI--ALSADFRKKL 275
R RQT++FSAT A+ A R+ L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRIL 575
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 298 (110.0 bits), Expect = 9.8e-29, Sum P(2) = 9.8e-29
Identities = 68/194 (35%), Positives = 113/194 (58%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L L+K++ G++ P+PIQ IPA G+D++ AA+TG+GKT F LP++Q
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVI-SGRDVMAAAQTGTGKTAGFTLPLLQ 66
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL KG + ++RALI+TPTRELA Q+++ ++ K +N+ +
Sbjct: 67 RLSSS----------KGNKVSS----NNVRALILTPTRELAAQISESIEVYGKYLNLHSM 112
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG+ Q L+ +++V TPGRL +L + + V+ L F+LDEADRM++
Sbjct: 113 VVFGGVKINPQIARLRQGVDVLVATPGRLLDLYN---QRAVKFSQLEVFILDEADRMLDM 169
Query: 216 GHFRELQSIIDMLP 229
G R+++ ++ LP
Sbjct: 170 GFIRDIKKLMTALP 183
Score = 42 (19.8 bits), Expect = 9.8e-29, Sum P(2) = 9.8e-29
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 254 KKRQTLVFSATIALSADFRKKLKHGSLK--LKQSVNGLNS 291
K RQ L+FSAT S + R K G + L+ SV+ NS
Sbjct: 184 KDRQNLLFSATF--SPEIRALAK-GMVNNPLEISVDAENS 220
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 303 (111.7 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 71/191 (37%), Positives = 114/191 (59%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W + + ++ ++ + +++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+ +
Sbjct: 359 WVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMFR 417
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L++R G EAE G L A+I+TPTRELALQ+T K+ +K + +RVV
Sbjct: 418 HILDQRP-VG--------EAE-----GPL-AVIMTPTRELALQITKECKKFSKSLALRVV 462
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q LK E++V TPGR+ +++ + L +++ V+DEADRM +
Sbjct: 463 CVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDM 522
Query: 216 GHFRELQSIID 226
G ++ I+D
Sbjct: 523 GFEPQVMRIVD 533
Score = 39 (18.8 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 253 RKKRQTLVFSAT 264
R RQT++FSAT
Sbjct: 536 RPDRQTVMFSAT 547
Score = 38 (18.4 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 11 VVSNGPDDAEEELVSEAEISTEFD 34
V +G D+ E++ +EAE S +
Sbjct: 182 VEPDGDDEEEQDKAAEAEESERME 205
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 329 (120.9 bits), Expect = 1.1e-28, P = 1.1e-28
Identities = 84/234 (35%), Positives = 137/234 (58%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
+I +W + L P +++ I + G+KEPTPIQ+ IP Q +DIIG AETGSGKT
Sbjct: 385 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTA 443
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
AF +P++ + K ++ EE+++ P A+I+ PTRELA Q+ + +
Sbjct: 444 AFLIPLLV-WITTLPKIDRI-----EESDQ-GPY----AIILAPTRELAQQIEEETIKFG 492
Query: 148 KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 207
K + +R V ++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VLD
Sbjct: 493 KPLGIRPVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVLD 549
Query: 208 EADRMIENGHFRELQSIIDMLPMTNGSNE-GQSEQTQTCVT-VSSLQRKKRQTL 259
EADRMI+ G ++Q I++ +P++N + ++E + + S + K RQTL
Sbjct: 550 EADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTL 603
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 72/193 (37%), Positives = 115/193 (59%)
Query: 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
EL + L+K+ RLG+K P+ IQ +P A +GKD+IG A+TGSGKT AF +PI+Q L
Sbjct: 13 ELGVREELVKACERLGWKNPSKIQAEALPFAL-EGKDVIGLAQTGSGKTGAFAIPILQAL 71
Query: 98 LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
LE + + + ++ + P A +++PTRELA+Q+ + + + I++R +
Sbjct: 72 LEY------VYDSEPKKGRR--PDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVL 123
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
VGG+ +Q L RP ++V TPGRLW+ MS + L +L + VLDEADR++
Sbjct: 124 VGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGF--SLKSLKYLVLDEADRLLNEDF 181
Query: 218 FRELQSIIDMLPM 230
+ L I++ +P+
Sbjct: 182 EKSLNQILEEIPL 194
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 315 (115.9 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
Identities = 72/191 (37%), Positives = 118/191 (61%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W + + ++ ++ + G+++PTPIQ IPA + G+D+IG A+TGSGKT+AF LP+ +
Sbjct: 373 WVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMN-GRDLIGIAKTGSGKTIAFLLPMFR 431
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++++R LEE GE G + A+I+TPTRELALQ+T K+ +K + +RVV
Sbjct: 432 HIMDQRA-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRVV 476
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 CVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDM 536
Query: 216 GHFRELQSIID 226
G ++ I+D
Sbjct: 537 GFEPQVMRIVD 547
Score = 40 (19.1 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 253 RKKRQTLVFSATI--ALSADFRKKL 275
R RQT++FSAT A+ A R+ L
Sbjct: 550 RPDRQTVMFSATFPRAMEALARRIL 574
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 281 (104.0 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 72/196 (36%), Positives = 106/196 (54%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L+ + L + +PTPIQ IP+ G+D+I A TGSGKT F LP++Q
Sbjct: 10 FTELGLITPLLARLAELEYHQPTPIQARAIPSV-FAGRDLIAGANTGSGKTATFALPMLQ 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN--VR 153
+L E+ K KG + L++ PTRELA QV D +K A N ++
Sbjct: 69 KLREDISSGSK--NSKGN---------FVTGLVLVPTRELAKQVADSIKSYAVHFNGEIK 117
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+ + GG+S Q L+ +++V TPGRL +L+S L ++ TL VLDEADRM+
Sbjct: 118 TLAVFGGVSVNIQMLALRGGVDILVATPGRLLDLISSNAIKLDKVKTL---VLDEADRML 174
Query: 214 ENGHFRELQSIIDMLP 229
G EL +++ + P
Sbjct: 175 SLGFTEELTALLALTP 190
Score = 52 (23.4 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 242 TQTCVTVSSLQRKKRQTLVFSAT 264
T+ + +L KK+QTL+FSAT
Sbjct: 179 TEELTALLALTPKKKQTLLFSAT 201
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 189 (71.6 bits), Expect = 7.2e-28, Sum P(3) = 7.2e-28
Identities = 42/104 (40%), Positives = 59/104 (56%)
Query: 126 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 185
AL++TPTRELA Q+ + K + +N+R IVGGM Q L +RP +V+ TPGR+
Sbjct: 129 ALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIK 188
Query: 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
L+ F VLDEADR+++ G EL++I LP
Sbjct: 189 VLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLP 232
Score = 149 (57.5 bits), Expect = 7.2e-28, Sum P(3) = 7.2e-28
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
S+ +T F+ L L +++ LG ++PTP+Q C+P G+D++G A+TGSG
Sbjct: 52 SDTTSATNFEG---LGLAEWAVETCKELGMRKPTPVQTHCVPKIL-AGRDVLGLAQTGSG 107
Query: 85 KTLAFGLPIMQRLLEE 100
KT AF LPI+ RL E+
Sbjct: 108 KTAAFALPILHRLAED 123
Score = 74 (31.1 bits), Expect = 7.2e-28, Sum P(3) = 7.2e-28
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK--LKQSVNGLNSIETLSER 298
T+ K RQTL+FSAT ++++ + L+H S K ++ GL +++TL+++
Sbjct: 226 TIFQCLPKSRQTLLFSAT--MTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQ 277
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 323 (118.8 bits), Expect = 9.0e-28, P = 9.0e-28
Identities = 91/261 (34%), Positives = 138/261 (52%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L L+K+I + +++PTPIQ IP A +D+IG AETGSGKT AF LP++
Sbjct: 700 WEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEM-RDLIGIAETGSGKTAAFVLPMLS 758
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ K L E + P AL+I P+RELA+Q+ + + A + R V
Sbjct: 759 YV--------KQLPPLTYETSQDGPY----ALVIAPSRELAIQIYEETNKFASYCSCRTV 806
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+VGG + E Q L+ E+V+GTPGRL + + EK L+ ++ +LDEADRM++
Sbjct: 807 AVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCL---EKAYTVLNQCNYVILDEADRMMDM 863
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD--FRK 273
G + I+D +P +N +E + Q + + R R T +FSAT+ S + RK
Sbjct: 864 GFEDTVHYILDKIPTSNLKSEDDALALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRK 923
Query: 274 KLKHGS-LKLKQSVNGLNSIE 293
L+ + + + G SIE
Sbjct: 924 YLRAPAYISIGDPGAGKRSIE 944
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 323 (118.8 bits), Expect = 9.0e-28, P = 9.0e-28
Identities = 91/261 (34%), Positives = 138/261 (52%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L L+K+I + +++PTPIQ IP A +D+IG AETGSGKT AF LP++
Sbjct: 700 WEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEM-RDLIGIAETGSGKTAAFVLPMLS 758
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ K L E + P AL+I P+RELA+Q+ + + A + R V
Sbjct: 759 YV--------KQLPPLTYETSQDGPY----ALVIAPSRELAIQIYEETNKFASYCSCRTV 806
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+VGG + E Q L+ E+V+GTPGRL + + EK L+ ++ +LDEADRM++
Sbjct: 807 AVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCL---EKAYTVLNQCNYVILDEADRMMDM 863
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD--FRK 273
G + I+D +P +N +E + Q + + R R T +FSAT+ S + RK
Sbjct: 864 GFEDTVHYILDKIPTSNLKSEDDALALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRK 923
Query: 274 KLKHGS-LKLKQSVNGLNSIE 293
L+ + + + G SIE
Sbjct: 924 YLRAPAYISIGDPGAGKRSIE 944
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 216 (81.1 bits), Expect = 1.7e-27, Sum P(3) = 1.7e-27
Identities = 50/117 (42%), Positives = 70/117 (59%)
Query: 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA 172
E + + RALI++P RELALQ +K+ +KG ++R V IVGG+S E+Q LL
Sbjct: 129 EHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSG 188
Query: 173 RPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+P++VV TPGR L E L EL ++ + V DEADR+ E G +L I+ LP
Sbjct: 189 KPDIVVATPGRFLHLKV--EMKL-ELSSIEYVVFDEADRLFEMGFAAQLTEILHALP 242
Score = 148 (57.2 bits), Expect = 1.7e-27, Sum P(3) = 1.7e-27
Identities = 27/62 (43%), Positives = 44/62 (70%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + L+ L+++I++ GFK PTPIQ+ IP +G+D++G A TGSGKT AF +P+++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLL-EGRDVVGMARTGSGKTAAFVIPMIE 129
Query: 96 RL 97
L
Sbjct: 130 HL 131
Score = 46 (21.3 bits), Expect = 1.7e-27, Sum P(3) = 1.7e-27
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 256 RQTLVFSATIALS-ADFRK 273
RQTL+FSAT+ + DF K
Sbjct: 245 RQTLLFSATLPRTLVDFAK 263
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 85/260 (32%), Positives = 139/260 (53%)
Query: 43 PLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEERE 102
P ++++I G+++ TPIQ+ IPA +G+D++ +A+TG+GKT AF LPI+Q
Sbjct: 10 PEILRAISDCGYQKMTPIQQQAIPAI-RRGQDVLASAQTGTGKTAAFALPILQ------- 61
Query: 103 KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMS 162
KM+E E K + R LI+TPTRELA QV ++++ +K +N V+ I GG+
Sbjct: 62 ---KMVENPSETL-----KSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVK 113
Query: 163 TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 222
E Q + LK +++V TPGRL E ++ + L ++ F VLDEADRM++ G ++Q
Sbjct: 114 VETQAQKLKRGADIIVATPGRLLEHLTACN---LSLSSVDFLVLDEADRMLDMGFSADIQ 170
Query: 223 SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKL 282
I+ + N+ + + T SS +K ++ + +SAD + ++
Sbjct: 171 KILQAV------NK-KRQNLLFSATFSSAVKKLANEMMIKPQV-ISADKQNTTADTVSQV 222
Query: 283 KQSVNGLNSIETLSERAGMR 302
V E LSE G +
Sbjct: 223 VYPVEQRRKRELLSELIGKK 242
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 72/195 (36%), Positives = 117/195 (60%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L+L ++ +I LG+ +PT IQ+ IP GKDII AA+TG+GKT +F LP++
Sbjct: 2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVL-AGKDIIAAAQTGTGKTASFVLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
++L + ++ GK L K +RALI+ PTRELA+QV + + AK +++
Sbjct: 61 EQLNSQYKETGKKLRAK-----------RIRALILVPTRELAVQVEASISQYAKYLDISS 109
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+ ++Q++ L +++V TPGRL ++ H EL L VLDEADRM++
Sbjct: 110 MAMYGGVDAQEQKQRLIWGVDILVATPGRLLDMTHQRVLHFDELDML---VLDEADRMLD 166
Query: 215 NGHFRELQSIIDMLP 229
G ++ II+ LP
Sbjct: 167 MGFIDDINKIIERLP 181
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 280 (103.6 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 71/194 (36%), Positives = 102/194 (52%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L L ++ S+ + G+ PTPIQ+ IP QG+DI+G A+TG+GKTLAF PI+
Sbjct: 9 FQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVI-QGRDIVGLAQTGTGKTLAFAAPILD 67
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL A P R L++ PTRELA Q+ G+N+RVV
Sbjct: 68 RLSRNASPA---------------PVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVV 112
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG Q R L+ ++V TPGRL +LM E+ V L + +LDEAD+M++
Sbjct: 113 MVCGGAKIGGQIRQLERGAHILVATPGRLIDLM---EQRAVSLDKVETLILDEADQMLDL 169
Query: 216 GHFRELQSIIDMLP 229
G L++I +P
Sbjct: 170 GFIHALRAIAKNVP 183
Score = 43 (20.2 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 255 KRQTLVFSATI 265
KRQTL FSAT+
Sbjct: 185 KRQTLFFSATM 195
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 279 (103.3 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 67/191 (35%), Positives = 107/191 (56%)
Query: 39 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLL 98
L L L+ +I G+ +PTP+Q+ IPA QG+D++ AA+TG+GKT F LPI++RL
Sbjct: 6 LGLSEALVGAIEAAGYTQPTPVQQRAIPAVL-QGRDLMVAAQTGTGKTGGFALPILERLF 64
Query: 99 EEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIV 158
++++++ P+ R L++TPTRELA QV D K A+ + I
Sbjct: 65 PNGHP---------DKSQRHGPR-QPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIF 114
Query: 159 GGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 218
GG+ Q + + +++V PGRL +L G V+L + VLDEADRM++ G
Sbjct: 115 GGVGMNPQVQAMARGVDVLVACPGRLLDLAGQGS---VDLSHVEILVLDEADRMLDMGFV 171
Query: 219 RELQSIIDMLP 229
+++ ++ LP
Sbjct: 172 HDVKKVLARLP 182
Score = 51 (23.0 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 255 KRQTLVFSATIALS-ADFRKKLKHGSLKLKQSVNGLNSIETLSER 298
KRQ L+FSAT + D KL H +++ + ++E + +R
Sbjct: 184 KRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPN-TTVERIEQR 227
>UNIPROTKB|G4MSR4 [details] [associations]
symbol:MGG_07099 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0043581 "mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_003715292.1 EnsemblFungi:MGG_07099T0
GeneID:2682984 KEGG:mgr:MGG_07099 Uniprot:G4MSR4
Length = 717
Score = 288 (106.4 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 80/220 (36%), Positives = 131/220 (59%)
Query: 18 DAEEELVSEAEISTEFDAWNEL---RLHPLLMKSI-YRLGFKEPTPIQKACIPAAAHQGK 73
+A++EL S ST+ +++L + ++K+I + +++ T +Q + A A +GK
Sbjct: 59 EAQQEL-SVQPGSTKITKFSDLAKANIDESIIKAITVDMRYEDMTDVQSMTL-APALKGK 116
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE-EAEKYAPKGHLRALIITPT 132
D++ A+TG+GKTLAF +P++Q++L+ A L+E ++A + ++A+II+PT
Sbjct: 117 DLVAQAKTGTGKTLAFLIPVIQKILD----ADPSLKEVSRGRPRRFAQRQSIKAIIISPT 172
Query: 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPE---LVVGTPGRLWELMS 189
RELA Q+ + + V V VGG T K+E L + E L+VGTPGRL +L+S
Sbjct: 173 RELAEQIGKEATRLCQRNGVTVQTAVGG--TGKRESLRRIHMEGCHLLVGTPGRLNDLLS 230
Query: 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
E ++ + VLDEADRM++ G EL+SI+DMLP
Sbjct: 231 D-ELSGIDASNVQALVLDEADRMLDVGFENELRSIVDMLP 269
Score = 44 (20.5 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 252 QRKKRQTLVFSATI 265
Q+ RQTL+FSAT+
Sbjct: 272 QQVPRQTLLFSATL 285
>UNIPROTKB|F8VRX4 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC089999 HGNC:HGNC:20084 ChiTaRS:DDX54 IPI:IPI01022245
ProteinModelPortal:F8VRX4 SMR:F8VRX4 Ensembl:ENST00000552375
ArrayExpress:F8VRX4 Bgee:F8VRX4 Uniprot:F8VRX4
Length = 208
Score = 187 (70.9 bits), Expect = 2.1e-26, Sum P(2) = 2.1e-26
Identities = 45/117 (38%), Positives = 66/117 (56%)
Query: 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA 172
E + ++ + RALI++PTRELALQ KE+ K ++ I+GG E Q L
Sbjct: 73 ERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHE 132
Query: 173 RPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
P++++ TPGRL + E L +L ++ + V DEADR+ E G +LQ II LP
Sbjct: 133 NPDIIIATPGRLVHVAV--EMSL-KLQSVEYVVFDEADRLFEMGFAEQLQEIIARLP 186
Score = 132 (51.5 bits), Expect = 2.1e-26, Sum P(2) = 2.1e-26
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
+ K I + G+K PTPIQ+ IP GKD++ A TGSGKT F LP+ +RL +
Sbjct: 24 VFKGIMKKGYKVPTPIQRKTIPVIL-DGKDVVAMARTGSGKTACFLLPMFERLKTHSAQT 82
Query: 105 G 105
G
Sbjct: 83 G 83
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 198 (74.8 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 39/105 (37%), Positives = 69/105 (65%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
R LI+TPTRELA+Q+ ++ +A+ +++ IVGG+S +QE +L++ P++VV TPGR+
Sbjct: 240 RVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRM 299
Query: 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+ + V+L L+ +LDEADR+++ G E+ ++ + P
Sbjct: 300 IDHLRNSMS--VDLDDLAVLILDEADRLLQTGFATEITELVRLCP 342
Score = 170 (64.9 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 16 PDDAEEE-LVSEAE-ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
P+DA + S + +S D + EL L L+++ LG+K+PTPIQ ACIP A G+
Sbjct: 147 PEDATPKPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLAL-TGR 205
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLL 98
D+ +A TGSGKT AF LP ++RLL
Sbjct: 206 DLCASAITGSGKTAAFALPTLERLL 230
Score = 63 (27.2 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 188 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI-IDMLPMTNGSNEGQSEQTQTCV 246
+S E+ +V L ++ V+ RMI+ H R S+ +D L + + QT
Sbjct: 276 LSVREQEVV-LRSMPDIVVATPGRMID--HLRNSMSVDLDDLAVLILDEADRLLQTGFAT 332
Query: 247 TVSSLQR---KKRQTLVFSATI 265
++ L R K+RQT++FSAT+
Sbjct: 333 EITELVRLCPKRRQTMLFSATM 354
Score = 42 (19.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/95 (22%), Positives = 41/95 (43%)
Query: 163 TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 222
TEK+++L+ + G P EL+S +++ E ++ + R+L+
Sbjct: 603 TEKEKKLVAQAEKDSAGNPAG-GELVSADRAEDLKMKEKR---KREREKNLPRKKRRKLE 658
Query: 223 SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
+ +ML G E + E+ S + KK+Q
Sbjct: 659 AAREMLEDNEGEEEEEDEEGDEKRGRSRGKDKKKQ 693
>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 278 (102.9 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 69/192 (35%), Positives = 104/192 (54%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W++L + +K +Y F PT IQ+ IP A +GK I+ +ETGSGKTLAF LPI++
Sbjct: 89 WSDLYISRPFLKVLYEQKFSNPTYIQRDVIPLAL-EGKSILANSETGSGKTLAFVLPILE 147
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RLL+ + KG Y +ALI+ PTREL+LQ D ++ + K + +
Sbjct: 148 RLLQSVNIKMRRNNMKGS----Y---NITKALILLPTRELSLQCYDVIRSLTKYVTITYS 200
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
GG+ ++QE K R ++ V TPGR+ +L+ + L V DEAD+++E
Sbjct: 201 LFCGGIDIKQQEYEFKKRNDIFVCTPGRILDLLLNSSSDFINY--LEIVVFDEADKLLEL 258
Query: 216 GHFRELQSIIDM 227
G E I+D+
Sbjct: 259 GFKEECLKILDV 270
Score = 53 (23.7 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 243 QTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK 281
+ C+ + + + K+Q L FSAT L++D K+L + SLK
Sbjct: 262 EECLKILDVCKFKKQILFFSAT--LTSDI-KQLANFSLK 297
>UNIPROTKB|Q8I4R9 [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 278 (102.9 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 69/192 (35%), Positives = 104/192 (54%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W++L + +K +Y F PT IQ+ IP A +GK I+ +ETGSGKTLAF LPI++
Sbjct: 89 WSDLYISRPFLKVLYEQKFSNPTYIQRDVIPLAL-EGKSILANSETGSGKTLAFVLPILE 147
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RLL+ + KG Y +ALI+ PTREL+LQ D ++ + K + +
Sbjct: 148 RLLQSVNIKMRRNNMKGS----Y---NITKALILLPTRELSLQCYDVIRSLTKYVTITYS 200
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
GG+ ++QE K R ++ V TPGR+ +L+ + L V DEAD+++E
Sbjct: 201 LFCGGIDIKQQEYEFKKRNDIFVCTPGRILDLLLNSSSDFINY--LEIVVFDEADKLLEL 258
Query: 216 GHFRELQSIIDM 227
G E I+D+
Sbjct: 259 GFKEECLKILDV 270
Score = 53 (23.7 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 243 QTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK 281
+ C+ + + + K+Q L FSAT L++D K+L + SLK
Sbjct: 262 EECLKILDVCKFKKQILFFSAT--LTSDI-KQLANFSLK 297
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 206 (77.6 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 44/113 (38%), Positives = 69/113 (61%)
Query: 118 YAPKGHLRALIITPTRELALQVTDHLKEVAKGIN-VRVVPIVGGMSTEKQERLLKARPEL 176
Y P + +I+TPTRELALQV + K+++ +N + + VGG++ +QE LK RP++
Sbjct: 194 YKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDI 253
Query: 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
V+ TPGRL + + V+ + V+DEADRM+E G EL I+ ++P
Sbjct: 254 VIATPGRLIDHIRNSPSFSVQ--DIQVLVIDEADRMLEEGFQDELTEILSLIP 304
Score = 155 (59.6 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 38/96 (39%), Positives = 58/96 (60%)
Query: 16 PDDAEEELVSEAEISTE---FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
P+D+ E + E S+ ++ L+L ++K I L F +PTPIQ A IP A G
Sbjct: 109 PEDSAEAIADFYEESSPQQTHTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIAL-LG 167
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108
KDI+ A+TGSGKT A+ +PI++RLL + + K++
Sbjct: 168 KDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVI 203
Score = 53 (23.7 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 236 EG-QSEQTQTCVTVSSLQRKKRQTLVFSATI 265
EG Q E T+ +S + + KRQTL+FSAT+
Sbjct: 290 EGFQDELTEI---LSLIPKHKRQTLLFSATM 317
Score = 38 (18.4 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 143 LKEVAKGINVRVVPIVGGMSTEKQERLL 170
L ++ KG++ RVV V T + R++
Sbjct: 365 LYQLLKGVSSRVVVFVARKETAHRLRIV 392
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 206 (77.6 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 44/113 (38%), Positives = 69/113 (61%)
Query: 118 YAPKGHLRALIITPTRELALQVTDHLKEVAKGIN-VRVVPIVGGMSTEKQERLLKARPEL 176
Y P + +I+TPTRELALQV + K+++ +N + + VGG++ +QE LK RP++
Sbjct: 194 YKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDI 253
Query: 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
V+ TPGRL + + V+ + V+DEADRM+E G EL I+ ++P
Sbjct: 254 VIATPGRLIDHIRNSPSFSVQ--DIQVLVIDEADRMLEEGFQDELTEILSLIP 304
Score = 155 (59.6 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 38/96 (39%), Positives = 58/96 (60%)
Query: 16 PDDAEEELVSEAEISTE---FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
P+D+ E + E S+ ++ L+L ++K I L F +PTPIQ A IP A G
Sbjct: 109 PEDSAEAIADFYEESSPQQTHTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIAL-LG 167
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108
KDI+ A+TGSGKT A+ +PI++RLL + + K++
Sbjct: 168 KDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVI 203
Score = 53 (23.7 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 236 EG-QSEQTQTCVTVSSLQRKKRQTLVFSATI 265
EG Q E T+ +S + + KRQTL+FSAT+
Sbjct: 290 EGFQDELTEI---LSLIPKHKRQTLLFSATM 317
Score = 38 (18.4 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 143 LKEVAKGINVRVVPIVGGMSTEKQERLL 170
L ++ KG++ RVV V T + R++
Sbjct: 365 LYQLLKGVSSRVVVFVARKETAHRLRIV 392
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 192 (72.6 bits), Expect = 4.8e-26, Sum P(2) = 4.8e-26
Identities = 51/159 (32%), Positives = 85/159 (53%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
+R LI+ PTRELALQ ++ +A+ N+ IVGG+S + QE L+ P++V+ TPGR
Sbjct: 262 IRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGR 321
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGS---NEGQSE 240
L + + H + L L +LDEADR+++ G E+ I++ P + + ++
Sbjct: 322 LIDHLLNA--HGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTMLFSATLND 379
Query: 241 QTQTCVTVSSLQRKKRQT-LVFSATIALSADFRK-KLKH 277
+ +T +S Q + Q + T L +F K K +H
Sbjct: 380 EVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQH 418
Score = 174 (66.3 bits), Expect = 4.8e-26, Sum P(2) = 4.8e-26
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
+ E + EL L L+K++ +LGF +PTPIQ IP A + GKDI+ +A TGSGKT A
Sbjct: 185 VEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALN-GKDILASASTGSGKTAA 243
Query: 89 FGLPIMQRLL 98
F LP+++RLL
Sbjct: 244 FLLPVLERLL 253
Score = 37 (18.1 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 13 SNGPDDAEEELVSEAEISTEFDAWNE 38
+N DD +EE V+E E E + NE
Sbjct: 124 NNDNDDDDEE-VNEEEEEEEEEEDNE 148
>TAIR|locus:2010306 [details] [associations]
symbol:EMB1586 "embryo defective 1586" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009663 "plasmodesma organization"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0010497
"plasmodesmata-mediated intercellular transport" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0003723
EMBL:AC012187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010497 EMBL:AC025417 EMBL:AY062618 EMBL:AY114691
EMBL:AK175587 EMBL:AK175711 EMBL:AK175751 EMBL:AK175793
EMBL:AK176044 EMBL:AK176194 EMBL:AK226229 EMBL:AK229878
EMBL:AK230085 IPI:IPI00521991 PIR:H86260 RefSeq:NP_172737.2
UniGene:At.47876 ProteinModelPortal:Q8W4E1 SMR:Q8W4E1 PaxDb:Q8W4E1
PRIDE:Q8W4E1 EnsemblPlants:AT1G12770.1 GeneID:837833
KEGG:ath:AT1G12770 GeneFarm:1026 TAIR:At1g12770
HOGENOM:HOG000239285 InParanoid:Q8W4E1 OMA:IRVSNFV PhylomeDB:Q8W4E1
ProtClustDB:CLSN2681499 Genevestigator:Q8W4E1 GO:GO:0009663
Uniprot:Q8W4E1
Length = 551
Score = 300 (110.7 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 95/300 (31%), Positives = 155/300 (51%)
Query: 7 GTVVVVSNGPDDAEEELVSEAEISTEFDA--WNELRLHPLLMKSIYRLGFKEPTPIQKAC 64
G V V N +E +S F A + EL L L+ S+ R GF PT +Q A
Sbjct: 81 GKVRAVKNDKMKVVKEKKPAEIVSPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAA 140
Query: 65 IPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 124
+PA +G D + + TGSGKTLA+ LPI+ + EK+ E + E +
Sbjct: 141 VPAII-KGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTE-------I 192
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVP-IVGGMSTEKQERLLKA-RPELVVGTPG 182
+A+I+ P+REL +Q+ ++++ ++ R+V +VGG + +QE LK +P +VVGTPG
Sbjct: 193 QAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPG 252
Query: 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE-LQSIIDMLPMTNGSN-EGQSE 240
R+ E+ GG+ H H F VLDE D ++ + +FRE + I++ + +G+ +G+ +
Sbjct: 253 RIAEISKGGKLHT---HGCRFLVLDEVDELL-SFNFREDIHRILEHVGKRSGAGPKGEVD 308
Query: 241 QTQTCVTVSSLQRKKRQTLVFSATIALSA-DFRKKLKHGSLKLKQSVNGLNSIETLSERA 299
+ R RQT++ SAT+ S K H + L Q+ N + ++T+ A
Sbjct: 309 E-----------RANRQTILVSATVPFSVIRAAKSWSHEPV-LVQA-NKVTPLDTVQPSA 355
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 302 (111.4 bits), Expect = 5.5e-26, P = 5.5e-26
Identities = 79/230 (34%), Positives = 125/230 (54%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L ++K + ++ +KEP+ IQ+A IP Q KD+IG AETGSGKT AF +P++
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLL-QRKDLIGIAETGSGKTAAFIIPLII 309
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ K L E YA +++ PTRELA Q+ + A+ + R V
Sbjct: 310 AI----SKLPP-LTESNMHLGPYA-------VVLAPTRELAQQIQVEGNKFAEPLGFRCV 357
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+VGG + E+Q + +VV TPGRL + + E+ L L ++ V+DEADRM++
Sbjct: 358 SVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCL---ERRLFVLSQCTYVVMDEADRMLDM 414
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++ I+ LP +N S E+ + + ++ +RQT++FSAT+
Sbjct: 415 GFEDDVNKILSSLPSSNAS-----EKDGSILATANSSSSRRQTIMFSATL 459
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 283 (104.7 bits), Expect = 6.6e-26, Sum P(2) = 6.6e-26
Identities = 71/192 (36%), Positives = 108/192 (56%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W++ L + I LG+++PT IQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAIT-SGRDVIGVAKTGSGKTIAFLLPMF 477
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ + ++R + GE G + A+I+TPTRELA+Q+ K K +N+R
Sbjct: 478 RHIKDQRPL------KTGE--------GPI-AIIMTPTRELAVQIFRECKPFLKLLNIRA 522
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
GG + Q LK E+VV TPGR+ +++S + LH ++ VLDEADRM +
Sbjct: 523 CCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFD 582
Query: 215 NGHFRELQSIID 226
G ++ II+
Sbjct: 583 LGFEPQVMRIIN 594
Score = 49 (22.3 bits), Expect = 6.6e-26, Sum P(2) = 6.6e-26
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 253 RKKRQTLVFSATI--ALSADFRKKLK 276
R RQT++FSAT A+ A RK LK
Sbjct: 597 RPDRQTVLFSATFPRAMEALARKVLK 622
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 180 (68.4 bits), Expect = 8.8e-26, Sum P(3) = 8.8e-26
Identities = 48/126 (38%), Positives = 69/126 (54%)
Query: 107 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ 166
+LE EE P H AL++TPT ELA Q+++ + + VRV + GG +
Sbjct: 65 ILERLSEE-----PVSHF-ALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVE 118
Query: 167 ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIID 226
+ L RP +VV PGRL + ++G + + L + V+DEADRM+ NG F E SII+
Sbjct: 119 SQKLMQRPHIVVAMPGRLADHLTGCDTFSFD--NLKYLVVDEADRML-NGDFDESLSIIE 175
Query: 227 M-LPMT 231
LP T
Sbjct: 176 RCLPKT 181
Score = 177 (67.4 bits), Expect = 8.8e-26, Sum P(3) = 8.8e-26
Identities = 38/69 (55%), Positives = 48/69 (69%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E + + L L P L+K + +LG K TPIQ+ CIPA G+D IGAA+TGSGKT AF L
Sbjct: 5 EANPFQILGLRPWLVKQLTKLGLKGATPIQQKCIPAIL-AGQDCIGAAKTGSGKTFAFAL 63
Query: 92 PIMQRLLEE 100
PI++RL EE
Sbjct: 64 PILERLSEE 72
Score = 39 (18.8 bits), Expect = 8.8e-26, Sum P(3) = 8.8e-26
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 254 KKRQTLVFSATIALSADFRKK-----LKHGSLKLKQSVNGLNSIETLSERAGMRANVAIV 308
K RQ L FSAT+ DF K+ + + Q + + ++ETL +R + A+
Sbjct: 180 KTRQNLFFSATMK---DFIKESSIFPIASDCFEWSQD-SDVATVETLDQRYLLCADYDR- 234
Query: 309 DLTNVSVLANKLEES 323
D+ + L EE+
Sbjct: 235 DMVLIEALRKYREEN 249
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 279 (103.3 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
Identities = 68/191 (35%), Positives = 110/191 (57%)
Query: 39 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLL 98
L L L+++I G+ +PTP+Q+ IPA QG+D++ AA+TG+GKT F LPI++RL
Sbjct: 6 LGLSEALVRAIEAAGYTQPTPVQQRAIPAVL-QGRDLMVAAQTGTGKTGGFALPILERLF 64
Query: 99 EEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIV 158
G + +K ++++ P+ R L++TPTRELA QV + K A+ + I
Sbjct: 65 PN----G--VPDK---SQRHGPR-QPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIF 114
Query: 159 GGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 218
GG+ Q + + +++V PGRL +L G V+L + VLDEADRM++ G
Sbjct: 115 GGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGS---VDLSHVEILVLDEADRMLDMGFV 171
Query: 219 RELQSIIDMLP 229
+++ ++ LP
Sbjct: 172 HDVKKVLARLP 182
Score = 44 (20.5 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 255 KRQTLVFSATIALS-ADFRKKLKHGSLKLKQSVNGLNSIETLSER 298
KRQ L+FSAT + KL H +++ + ++E + +R
Sbjct: 184 KRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPN-TTVERIEQR 227
>WB|WBGene00001598 [details] [associations]
symbol:glh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
[GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 270 (100.1 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 76/217 (35%), Positives = 118/217 (54%)
Query: 18 DAEEELVS-EAEISTE-FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
DAE +L S E + + + E L + K++ G+ + TPIQ+ +P HQG DI
Sbjct: 323 DAEVKLTSSEKTVGIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLV-HQGYDI 381
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135
+ A+TGSGKT AF LPIM RL+++ L GE Y P R +I+TPTREL
Sbjct: 382 MACAQTGSGKTAAFLLPIMTRLIDDNN-----LNTAGEGG-CY-P----RCIILTPTREL 430
Query: 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
A Q+ + ++ A + + P+ GG++ + ++ ++VGT GR+ G
Sbjct: 431 ADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGT--- 487
Query: 196 VELHTLSFFVLDEADRMIEN-GHFRELQSII--DMLP 229
++L FFVLDEADRMI+ G ++++I+ D +P
Sbjct: 488 IKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMP 524
Score = 56 (24.8 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 237 GQSEQTQTCVTVSSLQRKK-RQTLVFSAT 264
G +T V S+ RK+ RQTL+FSAT
Sbjct: 509 GFGTDIETIVNYDSMPRKENRQTLMFSAT 537
>UNIPROTKB|P34689 [details] [associations]
symbol:glh-1 "ATP-dependent RNA helicase glh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 270 (100.1 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 76/217 (35%), Positives = 118/217 (54%)
Query: 18 DAEEELVS-EAEISTE-FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
DAE +L S E + + + E L + K++ G+ + TPIQ+ +P HQG DI
Sbjct: 323 DAEVKLTSSEKTVGIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLV-HQGYDI 381
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135
+ A+TGSGKT AF LPIM RL+++ L GE Y P R +I+TPTREL
Sbjct: 382 MACAQTGSGKTAAFLLPIMTRLIDDNN-----LNTAGEGG-CY-P----RCIILTPTREL 430
Query: 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
A Q+ + ++ A + + P+ GG++ + ++ ++VGT GR+ G
Sbjct: 431 ADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGT--- 487
Query: 196 VELHTLSFFVLDEADRMIEN-GHFRELQSII--DMLP 229
++L FFVLDEADRMI+ G ++++I+ D +P
Sbjct: 488 IKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMP 524
Score = 56 (24.8 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 237 GQSEQTQTCVTVSSLQRKK-RQTLVFSAT 264
G +T V S+ RK+ RQTL+FSAT
Sbjct: 509 GFGTDIETIVNYDSMPRKENRQTLMFSAT 537
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 292 (107.8 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 69/191 (36%), Positives = 110/191 (57%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W + + M+ + RLGF++PTPIQ IPA G+D+IG A+TGSGKTLAF LP+ +
Sbjct: 512 WAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIM-SGRDLIGIAKTGSGKTLAFILPMFR 570
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L++ E G+ A A+I+ PTREL +Q+ +++ +K + +R V
Sbjct: 571 HILDQPSM------EDGDGAI---------AIIMAPTRELCMQIGKDIRKFSKSLGLRPV 615
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 616 CVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDM 675
Query: 216 GHFRELQSIID 226
G ++ IID
Sbjct: 676 GFEPQVMRIID 686
Score = 40 (19.1 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 253 RKKRQTLVFSATIA--LSADFRKKLK 276
R RQT++FSAT + A R+ LK
Sbjct: 689 RPDRQTVMFSATFPRQMEALARRILK 714
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 210 (79.0 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 41/107 (38%), Positives = 67/107 (62%)
Query: 127 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 186
LI+TPTRELALQ+ + + +N++V +VGG +Q L+ +P V+ TPGRL +
Sbjct: 73 LILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQRKPHFVIATPGRLAD 132
Query: 187 -LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 232
+++ GE+ + L + + VLDEADR++ N +LQ D+LP ++
Sbjct: 133 HILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPTSD 179
Score = 129 (50.5 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++N+L + L +S+ + PT IQ ACIPA +G D IG A+TGSGKT+AF P++
Sbjct: 2 SFNDLGVAKWLSESLDAMKIYTPTAIQSACIPAIL-KGHDCIGGAKTGSGKTIAFAAPML 60
Query: 95 QRLLEE 100
+ E+
Sbjct: 61 TQWSED 66
Score = 47 (21.6 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 234 SNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
SN S+ Q C V KRQTL+F+ATI
Sbjct: 161 SNSFGSD-LQRCFDVLPTS-DKRQTLLFTATI 190
Score = 40 (19.1 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 270 DFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAI--VDLTNVSVLAN 318
DFR H + + N L+ + + R + +VA +D+ V ++ N
Sbjct: 277 DFRVASLHSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELVIN 327
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 174 (66.3 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 36/104 (34%), Positives = 59/104 (56%)
Query: 126 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 185
AL++TPTRELA Q+ + + + GI ++ +VGGM Q L +P +++ TPGRL
Sbjct: 132 ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 191
Query: 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+ + + L + + V+DEADR++ EL I+ +LP
Sbjct: 192 DHLENMKGF--NLKAIKYLVMDEADRILNMDFEVELDKILKVLP 233
Score = 166 (63.5 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 39/92 (42%), Positives = 57/92 (61%)
Query: 14 NGPDD--AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
+G DD +E++ E +++ W +L L+ L ++ L +K P+ IQ+ IP A Q
Sbjct: 44 SGEDDKGSEDDAAEEQKLT-----WKDLGLNEALCQACDELKWKAPSKIQREAIPVAL-Q 97
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 103
GKD+IG AETGSGKT AF LPI+ LLE ++
Sbjct: 98 GKDVIGLAETGSGKTGAFALPILHALLENPQR 129
Score = 55 (24.4 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 254 KKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSE 297
++R+T +FSAT+ KKL+ SLK V N +T+ +
Sbjct: 234 RERRTFLFSATMTKKV---KKLQRASLKDPVKVEVSNKYQTVEQ 274
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 258 (95.9 bits), Expect = 1.9e-25, Sum P(3) = 1.9e-25
Identities = 68/190 (35%), Positives = 107/190 (56%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E L L K++ + G+ +PTP+QK IP + G+D++ A+TGSGKT AF LPI+Q
Sbjct: 279 FEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIIS-AGRDLMACAQTGSGKTAAFLLPILQ 337
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
R + + A K E +E E A+I+ PTREL Q+ ++ A G VR V
Sbjct: 338 RFMTDGVAASKFSEI--QEPE---------AIIVAPTRELINQIYLEARKFAYGTCVRPV 386
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG++T R + ++ TPGRL +L+ G+ + L + + VLDEADRM++
Sbjct: 387 VVYGGINTGYTIREVLKGCNVLCATPGRLHDLIGRGK---IGLSKVRYLVLDEADRMLDM 443
Query: 216 GHFRELQSII 225
G E++ ++
Sbjct: 444 GFEPEMRKLV 453
Score = 46 (21.3 bits), Expect = 1.9e-25, Sum P(3) = 1.9e-25
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 253 RKKRQTLVFSATIA-----LSADFRK 273
+++RQTL+FSAT ++ADF K
Sbjct: 461 KEERQTLMFSATYPEDIQRMAADFLK 486
Score = 38 (18.4 bits), Expect = 1.9e-25, Sum P(3) = 1.9e-25
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 5 NCGT-VVVVSNGPDDAEEELVSEAEISTEFDAWNEL 39
N G VV V P + E + S FD ++++
Sbjct: 228 NAGPKVVYVPPPPPEEESSIFSHYATGINFDKYDDI 263
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 290 (107.1 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 74/197 (37%), Positives = 117/197 (59%)
Query: 38 ELRLHPLLMKSI-YRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQR 96
EL L+ L K++ RL K PT +Q+ IPA G+D++ ++TGSGKT AFGLP++Q
Sbjct: 21 ELGLNAALRKALPTRL--KHPTRVQQLAIPAIL-AGRDLLALSQTGSGKTFAFGLPLLQI 77
Query: 97 LLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN----V 152
L ++ + K P AL++ PTRELALQV++ L +A ++ +
Sbjct: 78 LWQQIAV---------QTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPL 128
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ + GG++ E+Q L A+P+LVV TPGRL +L + + H + L + VLDEADR+
Sbjct: 129 NIQLLCGGVALEQQLADLSAKPQLVVATPGRLLDLCT--QSH-ISLDAIKHLVLDEADRL 185
Query: 213 IENGHFRELQSIIDMLP 229
+E G + ++Q ++ M+P
Sbjct: 186 LEMGFWPDMQKLMAMMP 202
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 290 (107.1 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 74/197 (37%), Positives = 117/197 (59%)
Query: 38 ELRLHPLLMKSI-YRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQR 96
EL L+ L K++ RL K PT +Q+ IPA G+D++ ++TGSGKT AFGLP++Q
Sbjct: 21 ELGLNAALRKALPTRL--KHPTRVQQLAIPAIL-AGRDLLALSQTGSGKTFAFGLPLLQI 77
Query: 97 LLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN----V 152
L ++ + K P AL++ PTRELALQV++ L +A ++ +
Sbjct: 78 LWQQIAV---------QTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPL 128
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ + GG++ E+Q L A+P+LVV TPGRL +L + + H + L + VLDEADR+
Sbjct: 129 NIQLLCGGVALEQQLADLSAKPQLVVATPGRLLDLCT--QSH-ISLDAIKHLVLDEADRL 185
Query: 213 IENGHFRELQSIIDMLP 229
+E G + ++Q ++ M+P
Sbjct: 186 LEMGFWPDMQKLMAMMP 202
>CGD|CAL0000625 [details] [associations]
symbol:SPB4 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K14809 EMBL:AACQ01000202 EMBL:AACQ01000200
RefSeq:XP_711358.1 RefSeq:XP_711406.1 ProteinModelPortal:Q59NP8
STRING:Q59NP8 GeneID:3647008 GeneID:3647042 KEGG:cal:CaO19.11631
KEGG:cal:CaO19.4154 CGD:CAL0005749 Uniprot:Q59NP8
Length = 631
Score = 281 (104.0 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 64/210 (30%), Positives = 120/210 (57%)
Query: 30 STEFDAWNELR--LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
+TE AW LR LHP + ++I +G+ TP+Q + IP + KD++ A TGSGKTL
Sbjct: 4 NTESLAWENLRYDLHPWIKEAISSMGYPTMTPVQASTIPLLSGN-KDVVVEAVTGSGKTL 62
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
+F +P++Q++ + K + G+ E +GH+ +++++PTRELA Q+ +V
Sbjct: 63 SFVIPVLQKISDRLYKP----DSDGDLPEP-VKRGHMLSIVLSPTRELANQIQSVFNQVL 117
Query: 148 ------KGINVRVVPIVGGMSTEKQE--RLLKARPELVVGTPGRLWELMSGGEKHLVELH 199
KG + +VG + +++ + L +P++++GTPGR+ E + G ++
Sbjct: 118 QYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQILIGTPGRILEFL--GSSQSIKTS 175
Query: 200 TLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+L +LDEAD++++ +++ +I+ LP
Sbjct: 176 SLEIVILDEADKLLDFSFEKDVINILKKLP 205
Score = 38 (18.4 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 254 KKRQTLVFSATIA 266
K+R+T +FSATI+
Sbjct: 206 KQRRTGLFSATIS 218
>WB|WBGene00001599 [details] [associations]
symbol:glh-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 267 (99.0 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 75/222 (33%), Positives = 119/222 (53%)
Query: 18 DAEEELVSEAE---ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKD 74
DAE ++ S+ + + T ++E L + K++ G+ + TPIQ+ +P HQG D
Sbjct: 534 DAEVKITSDKKPVGVKT-CKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLI-HQGHD 591
Query: 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134
I+ A+TGSGKT AF LPIM RL++E + L GE Y P R +I+TPTRE
Sbjct: 592 IMACAQTGSGKTAAFLLPIMARLIDEND-----LNTAGEGG-CY-P----RCIILTPTRE 640
Query: 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
L Q+ + ++ A + + P+ GG++ + ++ ++VGT GR+ G
Sbjct: 641 LTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGT-- 698
Query: 195 LVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSN 235
++L FFVLDEADRMI+ G ++ +I++ M N
Sbjct: 699 -IKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKEN 739
Score = 59 (25.8 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 237 GQSEQTQTCVTVSSLQRKK-RQTLVFSATIALSAD--FRKKLKHGSLKL 282
G T V S+ +K+ RQTL+FSAT S R LK G + L
Sbjct: 720 GFGTDIDTIVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIML 768
>UNIPROTKB|Q966L9 [details] [associations]
symbol:glh-2 "ATP-dependent RNA helicase glh-2"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 267 (99.0 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 75/222 (33%), Positives = 119/222 (53%)
Query: 18 DAEEELVSEAE---ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKD 74
DAE ++ S+ + + T ++E L + K++ G+ + TPIQ+ +P HQG D
Sbjct: 534 DAEVKITSDKKPVGVKT-CKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLI-HQGHD 591
Query: 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134
I+ A+TGSGKT AF LPIM RL++E + L GE Y P R +I+TPTRE
Sbjct: 592 IMACAQTGSGKTAAFLLPIMARLIDEND-----LNTAGEGG-CY-P----RCIILTPTRE 640
Query: 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
L Q+ + ++ A + + P+ GG++ + ++ ++VGT GR+ G
Sbjct: 641 LTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGT-- 698
Query: 195 LVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSN 235
++L FFVLDEADRMI+ G ++ +I++ M N
Sbjct: 699 -IKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKEN 739
Score = 59 (25.8 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 237 GQSEQTQTCVTVSSLQRKK-RQTLVFSATIALSAD--FRKKLKHGSLKL 282
G T V S+ +K+ RQTL+FSAT S R LK G + L
Sbjct: 720 GFGTDIDTIVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIML 768
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 195 (73.7 bits), Expect = 2.7e-25, Sum P(3) = 2.7e-25
Identities = 42/105 (40%), Positives = 62/105 (59%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
R I+ PTRELA+Q + ++A ++ +VGG S +QE +LK RP++++ TPGR
Sbjct: 371 RVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRPDVIIATPGRF 430
Query: 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+ M V+ TL VLDEADRM+E+G EL I+ +P
Sbjct: 431 IDHMRNSASFTVD--TLEILVLDEADRMLEDGFADELNEILTTIP 473
Score = 152 (58.6 bits), Expect = 2.7e-25, Sum P(3) = 2.7e-25
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 20 EEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAA 79
EE+ +A ++ ++ E L +++ + + F PTPIQ+ IP A GKDI+G+A
Sbjct: 284 EEKTDEDAATNSAKRSFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVAL-LGKDIVGSA 342
Query: 80 ETGSGKTLAFGLPIMQRLL 98
TGSGKT AF +PI++RLL
Sbjct: 343 VTGSGKTAAFVVPILERLL 361
Score = 49 (22.3 bits), Expect = 2.7e-25, Sum P(3) = 2.7e-25
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 254 KKRQTLVFSATIALSAD 270
K RQT++FSAT+ S D
Sbjct: 474 KSRQTMLFSATMTDSVD 490
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 297 (109.6 bits), Expect = 3.2e-25, P = 3.2e-25
Identities = 80/230 (34%), Positives = 127/230 (55%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L ++++I +LG+++P+PIQ IP + G+DI+G AETGSGKT AF +P++
Sbjct: 415 WQESNLPREILEAIRQLGYEKPSPIQMQSIPISL-TGRDILGIAETGSGKTCAFVIPMLI 473
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ K ++ K EA+ P AL++ PTREL Q+ + A+ RVV
Sbjct: 474 YI----SKQPRLT--KDTEAD--GPY----ALVMAPTRELVQQIEKETRNFAQHFGFRVV 521
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+VGG S E Q + E+++ TPGRL + + EK + L+ ++ VLDEAD MI+
Sbjct: 522 SLVGGQSIEDQAYQVSKGCEIIIATPGRLNDCL---EKRYLVLNQCNYIVLDEADMMIDL 578
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++ S++D +P + +E E + S R T++FSAT+
Sbjct: 579 GFEPQVTSVLDAMPSSFLKSE-DDEMAEK--QESDRSHIYRTTILFSATM 625
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 195 (73.7 bits), Expect = 4.0e-25, Sum P(3) = 4.0e-25
Identities = 45/114 (39%), Positives = 65/114 (57%)
Query: 118 YAPKG--HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPE 175
Y PK R LI+ PTRELA+Q ++A ++ V +GG+S + QE+ L+ RP+
Sbjct: 323 YRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPD 382
Query: 176 LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+V+ TPGR + M + VE + V+DEADRM+E+G EL II P
Sbjct: 383 IVIATPGRFIDHMRNSQGFTVE--NIEIMVMDEADRMLEDGFADELNEIIQACP 434
Score = 153 (58.9 bits), Expect = 4.0e-25, Sum P(3) = 4.0e-25
Identities = 34/75 (45%), Positives = 48/75 (64%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
++T ++ + L ++K + LGF+ PT IQ IP A GKDI+GAA TGSGKT A
Sbjct: 254 MTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLAL-LGKDIVGAAVTGSGKTAA 312
Query: 89 FGLPIMQRLLEEREK 103
F +PI++RLL +K
Sbjct: 313 FIVPILERLLYRPKK 327
Score = 45 (20.9 bits), Expect = 4.0e-25, Sum P(3) = 4.0e-25
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 254 KKRQTLVFSATIALSAD 270
K RQT++FSAT+ D
Sbjct: 435 KSRQTMLFSATMTDKVD 451
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 281 (104.0 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 69/216 (31%), Positives = 120/216 (55%)
Query: 18 DAEEELVSEA---EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKD 74
D E++ EA + ++++++L ++ ++ + +PTP+QK IP + G+D
Sbjct: 276 DKYEDIPVEATGQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIIN-GRD 334
Query: 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134
++ A+TGSGKT AF +PI+ ++ E + ++Y P G L++ PTRE
Sbjct: 335 LMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQY-PLG----LVLAPTRE 389
Query: 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
LA Q+ + K+ A +R + GG +T +Q R L L+V TPGRL ++++ G+
Sbjct: 390 LATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGK-- 447
Query: 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230
V L + F VLDEADRM++ G +++ I++ L M
Sbjct: 448 -VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNM 482
Score = 40 (19.1 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 255 KRQTLVFSAT 264
+RQTL+FSAT
Sbjct: 487 QRQTLMFSAT 496
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 253 (94.1 bits), Expect = 4.7e-25, Sum P(2) = 4.7e-25
Identities = 66/187 (35%), Positives = 104/187 (55%)
Query: 43 PLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEERE 102
P + + I++ GF PT IQ P G D++G A TGSGKTLAF LP + +++
Sbjct: 120 PRMFQHIFQ-GFTAPTVIQGQSWPIILG-GNDLVGLAATGSGKTLAFLLPALLKIIS--- 174
Query: 103 KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMS 162
L ++ P L++ PTRELA Q+ + K +G ++R + GG+
Sbjct: 175 -----LPKRPSYGA--TPL----VLVMAPTRELAQQIEEVCKTSIRGTSIRQLCAYGGLG 223
Query: 163 TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 222
Q R+L+ ++V+GTPGRL +L+ KH L ++ + VLDEADRM++ G +++
Sbjct: 224 KIDQSRILRNGVDIVIGTPGRLNDLL---RKH--HLSSVQYLVLDEADRMLDMGFMPQIE 278
Query: 223 SIIDMLP 229
S+ID +P
Sbjct: 279 SLIDQIP 285
Score = 63 (27.2 bits), Expect = 4.7e-25, Sum P(2) = 4.7e-25
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 254 KKRQTLVFSATIA-----LSADFRK---KLKHGSLKLKQSVNGLNSIETLSERAGMRANV 305
K+RQTL+FSAT L++ F K K+ GS +L S+N I + + + ++++
Sbjct: 286 KERQTLMFSATWPKEVKLLASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSDLQSDD 345
Query: 306 AIVDLTNVSVLAN 318
I D N + A+
Sbjct: 346 LIYDEINKILTAD 358
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 279 (103.3 bits), Expect = 5.3e-25, Sum P(2) = 5.3e-25
Identities = 68/194 (35%), Positives = 108/194 (55%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W + L + + + +++PT IQ IPA + G+D+IG A TGSGKTLAF LP+
Sbjct: 510 SWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMN-GRDLIGIARTGSGKTLAFLLPMF 568
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ +L + K AP + ALI++PTRELALQ+ K+ +K + +R
Sbjct: 569 RHILAQ---------------PKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRT 613
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG S +Q LK ++VV TPGR+ +++ + + L ++F VLDEADRM +
Sbjct: 614 ACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFD 673
Query: 215 NGHFRELQSIIDML 228
G ++ I+D +
Sbjct: 674 MGFGPQINCIVDSI 687
Score = 46 (21.3 bits), Expect = 5.3e-25, Sum P(2) = 5.3e-25
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 245 CVTVSSLQRKKRQTLVFSATIALSAD-FRKKLKHGSLKL 282
C+ V S+ R RQT++FSAT + KK+ + L++
Sbjct: 682 CI-VDSI-RPDRQTIMFSATFPPKVENVAKKILNKPLEI 718
Score = 38 (18.4 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 234 SNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272
S G +QT T+S + K + L+ + + D +
Sbjct: 785 SLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIK 823
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 279 (103.3 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 80/205 (39%), Positives = 118/205 (57%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGK 85
EA+ E A ++L L L +S+ + G PIQ+A + A QG+DII A+TG+GK
Sbjct: 95 EADDGEEL-AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPAL-QGRDIIARAKTGTGK 152
Query: 86 TLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL-RALIITPTRELALQVTDHLK 144
TLAFG+PI++RL EE AG + + G L + L++ PTRELA QV +K
Sbjct: 153 TLAFGIPIIKRLTEE---AG--------DYTAFRRSGRLPKFLVLAPTRELAKQVEKEIK 201
Query: 145 EVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204
E A ++ V + GG+S Q+ L ++VVGTPGR+ +L+ G L E+ +
Sbjct: 202 ESAPYLST--VCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVE---YL 256
Query: 205 VLDEADRMIENGHFRELQSIIDMLP 229
VLDEAD+M+ G ++SI++ LP
Sbjct: 257 VLDEADQMLAVGFEEAVESILENLP 281
Score = 39 (18.8 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 7/11 (63%), Positives = 11/11 (100%)
Query: 255 KRQTLVFSATI 265
KRQ+++FSAT+
Sbjct: 283 KRQSMLFSATM 293
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 202 (76.2 bits), Expect = 6.7e-25, Sum P(3) = 6.7e-25
Identities = 41/114 (35%), Positives = 71/114 (62%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
R L+++PTRELA+Q ++L + +G N++ V + GG +Q R K +++GTPGRL
Sbjct: 238 RVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAK-NASVIIGTPGRL 296
Query: 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP--MTNGSNE 236
+L++ G ++ + + VLDEADRM++ G +++++II P NGS +
Sbjct: 297 LDLINDGS---IDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQ 347
Score = 133 (51.9 bits), Expect = 6.7e-25, Sum P(3) = 6.7e-25
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 54 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL--LEEREKAGKML 108
+KEPTPIQ A P G+D++G AETGSGKT+AFG+P +Q L L + + ++L
Sbjct: 185 YKEPTPIQAATWPYLL-AGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVL 240
Score = 48 (22.0 bits), Expect = 6.7e-25, Sum P(3) = 6.7e-25
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 256 RQTLVFSATI-----ALSADFRK---KLKHGSLKLKQSVNGLNSIETLSE 297
RQT+ FSAT AL+A F K K+ GS +L S N +E L +
Sbjct: 346 RQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDD 395
>GENEDB_PFALCIPARUM|PF14_0429 [details] [associations]
symbol:PF14_0429 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HSSP:P10081 RefSeq:XP_001348603.1
ProteinModelPortal:Q8IL21 PRIDE:Q8IL21
EnsemblProtists:PF14_0429:mRNA GeneID:812011 KEGG:pfa:PF14_0429
EuPathDB:PlasmoDB:PF3D7_1445200 HOGENOM:HOG000282109
ProtClustDB:CLSZ2431945 Uniprot:Q8IL21
Length = 796
Score = 293 (108.2 bits), Expect = 7.9e-25, P = 7.9e-25
Identities = 89/288 (30%), Positives = 144/288 (50%)
Query: 20 EEELVSEAEISTEFDA--WNE----LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
EEEL + I + WN LH + MKS++ F +PT IQ + + +
Sbjct: 217 EEELEKDNNIKYKIHCNNWNNGGKIFILHSV-MKSLFDNAFFKPTEIQSKTLEKSINDKN 275
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133
DI+ ++TG+GKTL F LPI+ +L + K K +K + +K+ R LI+ PTR
Sbjct: 276 DIVVISKTGTGKTLTFCLPILNNILINKLKEYK---KKLKNIQKF------RCLILVPTR 326
Query: 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WEL-MSGG 191
ELALQ+ H + K IN+ + I+GG++ KQ+R+L +PE+++ TPGRL + L +
Sbjct: 327 ELALQILKHFNYINKYINLFISTIIGGLNLNKQKRILMKKPEILICTPGRLKYFLHLENP 386
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQT-QTCVTVS- 249
K++ ++ + + V DE D+MIE +++ I + + G + + QT T+S
Sbjct: 387 IKYIYQMKNIRYLVCDEIDKMIEISFMKDISYIAKHIYKSVGDKKKKLIQTFLLSATLSL 446
Query: 250 --SLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETL 295
LQ L+ S I F L + + N L + TL
Sbjct: 447 TVQLQNDNMTKLLNSIIIRKDKSFIINLSNEQNVYNDNSNILPELLTL 494
>UNIPROTKB|Q8IL21 [details] [associations]
symbol:PF14_0429 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P10081 RefSeq:XP_001348603.1
ProteinModelPortal:Q8IL21 PRIDE:Q8IL21
EnsemblProtists:PF14_0429:mRNA GeneID:812011 KEGG:pfa:PF14_0429
EuPathDB:PlasmoDB:PF3D7_1445200 HOGENOM:HOG000282109
ProtClustDB:CLSZ2431945 Uniprot:Q8IL21
Length = 796
Score = 293 (108.2 bits), Expect = 7.9e-25, P = 7.9e-25
Identities = 89/288 (30%), Positives = 144/288 (50%)
Query: 20 EEELVSEAEISTEFDA--WNE----LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
EEEL + I + WN LH + MKS++ F +PT IQ + + +
Sbjct: 217 EEELEKDNNIKYKIHCNNWNNGGKIFILHSV-MKSLFDNAFFKPTEIQSKTLEKSINDKN 275
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133
DI+ ++TG+GKTL F LPI+ +L + K K +K + +K+ R LI+ PTR
Sbjct: 276 DIVVISKTGTGKTLTFCLPILNNILINKLKEYK---KKLKNIQKF------RCLILVPTR 326
Query: 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WEL-MSGG 191
ELALQ+ H + K IN+ + I+GG++ KQ+R+L +PE+++ TPGRL + L +
Sbjct: 327 ELALQILKHFNYINKYINLFISTIIGGLNLNKQKRILMKKPEILICTPGRLKYFLHLENP 386
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQT-QTCVTVS- 249
K++ ++ + + V DE D+MIE +++ I + + G + + QT T+S
Sbjct: 387 IKYIYQMKNIRYLVCDEIDKMIEISFMKDISYIAKHIYKSVGDKKKKLIQTFLLSATLSL 446
Query: 250 --SLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETL 295
LQ L+ S I F L + + N L + TL
Sbjct: 447 TVQLQNDNMTKLLNSIIIRKDKSFIINLSNEQNVYNDNSNILPELLTL 494
>UNIPROTKB|G5EHR3 [details] [associations]
symbol:MGCH7_ch7g509 "ATP-dependent RNA helicase DED1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
EMBL:CM001237 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 RefSeq:XP_003720990.1 ProteinModelPortal:G5EHR3
EnsemblFungi:MGG_02762T0 GeneID:2682767 KEGG:mgr:MGG_02762
Uniprot:G5EHR3
Length = 619
Score = 268 (99.4 bits), Expect = 8.4e-25, Sum P(2) = 8.4e-25
Identities = 67/209 (32%), Positives = 112/209 (53%)
Query: 20 EEELVSEAEISTEFDA-WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
E +V E + E + + LHP ++K++ G+K PTPIQ CIPA H+G D+IG
Sbjct: 107 EIAVVQEGPVRVEPALRFEDAGLHPAMLKNVDLCGYKVPTPIQAYCIPAI-HKGHDVIGI 165
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE-EAEKYAP-KGHLRALIITPTRELA 136
A+TGSGKT AF +P++ +L+ + +K E + + P + +I+ PTRELA
Sbjct: 166 AQTGSGKTAAFLIPVINKLMGKAKKLAAPRPNPVEYNMDIHGPVRAEPLVVIVCPTRELA 225
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
+Q + +++ +R + GG + Q R + +++ TPGRL M E L+
Sbjct: 226 IQAFNEARKLCYRSMLRPGVVYGGGNFMDQIRQIGLGCDILCATPGRLLHFMDKPE--LL 283
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSII 225
L + + V+DEAD M+ +++ I+
Sbjct: 284 NLQRVRYVVIDEADEMLTADWEEDMKKIM 312
Score = 46 (21.3 bits), Expect = 8.4e-25, Sum P(2) = 8.4e-25
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 259 LVFSATIALSA-DF-RKKLKHGSLKLKQSVNGL---NSIETLSERAGMRANVAIVDLTN 312
L+FSAT D R+ L ++L+ G N I+T+ E A M A+ DL N
Sbjct: 324 LLFSATFPKKIRDLAREHLSEDHVQLRVGRAGSTHSNIIQTVIETAPMNKKRALNDLIN 382
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 265 (98.3 bits), Expect = 8.5e-25, Sum P(2) = 8.5e-25
Identities = 69/202 (34%), Positives = 113/202 (55%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
VS + + E +L L +I R G+ +PTP+QK +P + G+D++ A+TGS
Sbjct: 171 VSGTNLPAAIMTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIIS-AGRDLMACAQTGS 229
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKT AF LPI+Q+L+ + A + E +E E A+I+ PTREL Q+
Sbjct: 230 GKTAAFLLPILQQLMADGVAASRFSEI--QEPE---------AVIVAPTRELINQIYQEA 278
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
++ + G VR V + GG++T Q R ++ ++ GTPGRL +++ G+ V L +
Sbjct: 279 RKFSFGTCVRPVVVYGGVNTGYQMREIEKGCNVLCGTPGRLLDMIGRGK---VGLSKVRH 335
Query: 204 FVLDEADRMIENGHFRELQSII 225
VLDEADRM++ G +++ ++
Sbjct: 336 LVLDEADRMLDMGFEPDMRRLV 357
Score = 49 (22.3 bits), Expect = 8.5e-25, Sum P(2) = 8.5e-25
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 253 RKKRQTLVFSATIA-----LSADFRK 273
+++RQTL+FSAT L+ADF K
Sbjct: 365 KEERQTLMFSATFPEDIQRLAADFLK 390
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 171 (65.3 bits), Expect = 8.7e-25, Sum P(3) = 8.7e-25
Identities = 40/113 (35%), Positives = 65/113 (57%)
Query: 120 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVG 179
P G + L++TPTRELA Q+ + + + K + ++ +VGG+ Q L +P +V+
Sbjct: 68 PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHVVIA 126
Query: 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG--HFR-ELQSIIDMLP 229
TPGRL + + + L L F VLDEADR++E G F +L+ I++ +P
Sbjct: 127 TPGRLADHLRSS--NTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVP 177
Score = 161 (61.7 bits), Expect = 8.7e-25, Sum P(3) = 8.7e-25
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
A+ EL L P L++ ++G PTP+Q +CIP QG+D +G A+TGSGKT AF LP++
Sbjct: 3 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPIL-QGRDCLGCAKTGSGKTAAFVLPVL 61
Query: 95 QRLLEE 100
Q L E+
Sbjct: 62 QVLSED 67
Score = 50 (22.7 bits), Expect = 8.7e-25, Sum P(3) = 8.7e-25
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 255 KRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSER 298
+RQTL+FSAT+ + + K L ++ + + +++ L +R
Sbjct: 179 RRQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQR 222
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 276 (102.2 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 67/200 (33%), Positives = 116/200 (58%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
D +++L + ++M +I + PTP+QK IP + +D++ A+TGSGKT AF LP+
Sbjct: 208 DRFHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSK-RDLMACAQTGSGKTAAFLLPV 266
Query: 94 MQRLLEERE-KAGKMLEEKGEEAEKYAP-KGHLRALIITPTRELALQVTDHLKEVAKGIN 151
+ ++ + +A + + +E KY K + +L++ PTRELALQ+ D ++ + +
Sbjct: 267 LSQIYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSH 326
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
VR + GG +Q R L+ L+V TPGRL ++M G+ + L ++ VLDEADR
Sbjct: 327 VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLLDMMERGK---IGLDYCNYLVLDEADR 383
Query: 212 MIENGHFRELQSII--DMLP 229
M++ G +++ I+ D +P
Sbjct: 384 MLDMGFEPQIRRIVEQDTMP 403
Score = 37 (18.1 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 256 RQTLVFSAT 264
RQT++FSAT
Sbjct: 408 RQTMMFSAT 416
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 200 (75.5 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 46/110 (41%), Positives = 66/110 (60%)
Query: 120 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVG 179
P G + ALI+TPTRELA Q+ + + K I ++ IVGG S Q R L RP +VV
Sbjct: 155 PYG-IYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSERPHVVVA 213
Query: 180 TPGRLWELMSGGEKHLVELHT-LSFFVLDEADRMIENGHFRELQSIIDML 228
TPGRL +L+ + ++ + FFVLDEADRM+E + +L+ I + +
Sbjct: 214 TPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESI 263
Score = 145 (56.1 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 17 DDAEEEL-VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
DD + + +SE ++T+ +++L + + + + + K TP+Q ACIP +G DI
Sbjct: 73 DDTPKPIQISEDNMTTK--KFSQLGVCSWITQQLQTMQIKTATPVQAACIPKIL-EGSDI 129
Query: 76 IGAAETGSGKTLAFGLPIMQRL 97
+G A TG+GKTLAF +PI+Q+L
Sbjct: 130 LGCARTGTGKTLAFAIPILQKL 151
Score = 61 (26.5 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 32/126 (25%), Positives = 56/126 (44%)
Query: 163 TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 222
T+ LL+A E V+G +L EL KH+ + T EA+ +EN F E +
Sbjct: 442 TQYDVELLQA-VEQVIGK--KLDELKVS-PKHVTKYVTQVLVAKKEAELKLENQKFGEKK 497
Query: 223 SIIDMLPMT-NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK 281
I + +G +E ++++ + + KR+ S + F+KKL + K
Sbjct: 498 EINRRKELLMSGMDEDEADRHLEEMRTRRMTNSKRKLEKISGQLDKRDRFQKKL--AAKK 555
Query: 282 LKQSVN 287
+K+ N
Sbjct: 556 VKKEEN 561
Score = 44 (20.5 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
F+++Q + L + EGQ Q S+ +KRQTL+ SATI
Sbjct: 233 FKKIQFFV--LDEADRMLEGQYND-QLKPIFESIS-EKRQTLLLSATI 276
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 171 (65.3 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
Identities = 40/113 (35%), Positives = 65/113 (57%)
Query: 120 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVG 179
P G + L++TPTRELA Q+ + + + K + ++ +VGG+ Q L +P +V+
Sbjct: 71 PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHVVIA 129
Query: 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG--HFR-ELQSIIDMLP 229
TPGRL + + + L L F VLDEADR++E G F +L+ I++ +P
Sbjct: 130 TPGRLADHLRSS--NTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVP 180
Score = 162 (62.1 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
Identities = 33/71 (46%), Positives = 47/71 (66%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
S+ A+ EL L P L++ ++G PTP+Q +CIP QG+D +G A+TGSGKT AF
Sbjct: 1 SSGMAAFRELGLAPWLVEQARQMGLSRPTPVQASCIPPIL-QGRDCLGCAKTGSGKTAAF 59
Query: 90 GLPIMQRLLEE 100
LP++Q L E+
Sbjct: 60 VLPVLQVLSED 70
Score = 50 (22.7 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 255 KRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSER 298
+RQTL+FSAT+ + + K L ++ + + +++ L +R
Sbjct: 182 RRQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQR 225
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 270 (100.1 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 68/195 (34%), Positives = 105/195 (53%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
L LLM++I F +PTP+QK IP +G+D++ A+TGSGKT F P+ L
Sbjct: 161 LDELLMENIKLASFTKPTPVQKYSIPIVT-KGRDLMACAQTGSGKTGGFLFPLFTELFRS 219
Query: 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG 160
+ EK + Y+ KG+ AL++ PTRELA Q+ + ++ VR + GG
Sbjct: 220 GPSP---VPEKAQSF--YSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGG 274
Query: 161 MSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 220
Q R + +L+V TPGRL +L+ G+ V L + + VLDEADRM++ G +
Sbjct: 275 APIGNQMREVDRGCDLLVATPGRLNDLLERGK---VSLANIKYLVLDEADRMLDMGFEPQ 331
Query: 221 LQSIIDMLPMTNGSN 235
++ I++ M + N
Sbjct: 332 IRHIVEECDMPSVEN 346
Score = 40 (19.1 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 254 KKRQTLVFSAT 264
+ RQTL+FSAT
Sbjct: 345 ENRQTLMFSAT 355
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 290 (107.1 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 81/251 (32%), Positives = 134/251 (53%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
A I T FD L L+ LL+ +I ++ + + TPIQK + ++ D+IG A+TGSGKT
Sbjct: 357 AAIET-FDD-PSLNLNELLLSNIKKVNYDKTTPIQKYSLNIIMNRN-DLIGVAQTGSGKT 413
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR-ALIITPTRELALQVTDHLKE 145
+ LPI+ +L E+ + + Y + L LI+ PTRELA+Q+ K+
Sbjct: 414 AGYLLPIINHMLINDPPKHTYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKK 473
Query: 146 VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
++ V + GG + + Q L +++V TPGRL +++ EK ++L +F V
Sbjct: 474 FCFETGIKPVVLYGGNNIKTQLSNLDKGADIIVATPGRLNDIL---EKGKIKLFLTTFLV 530
Query: 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
LDEADRM++ G +++SI++ M N+ + + + KRQT++FSAT
Sbjct: 531 LDEADRMLDMGFSPQIRSIVNDYDMPGNDNDVHTSENKVEYKKYCNDIIKRQTIMFSAT- 589
Query: 266 ALSADFRKKLK 276
FRK+++
Sbjct: 590 -----FRKEIQ 595
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 290 (107.1 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 81/251 (32%), Positives = 134/251 (53%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
A I T FD L L+ LL+ +I ++ + + TPIQK + ++ D+IG A+TGSGKT
Sbjct: 357 AAIET-FDD-PSLNLNELLLSNIKKVNYDKTTPIQKYSLNIIMNRN-DLIGVAQTGSGKT 413
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR-ALIITPTRELALQVTDHLKE 145
+ LPI+ +L E+ + + Y + L LI+ PTRELA+Q+ K+
Sbjct: 414 AGYLLPIINHMLINDPPKHTYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKK 473
Query: 146 VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
++ V + GG + + Q L +++V TPGRL +++ EK ++L +F V
Sbjct: 474 FCFETGIKPVVLYGGNNIKTQLSNLDKGADIIVATPGRLNDIL---EKGKIKLFLTTFLV 530
Query: 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
LDEADRM++ G +++SI++ M N+ + + + KRQT++FSAT
Sbjct: 531 LDEADRMLDMGFSPQIRSIVNDYDMPGNDNDVHTSENKVEYKKYCNDIIKRQTIMFSAT- 589
Query: 266 ALSADFRKKLK 276
FRK+++
Sbjct: 590 -----FRKEIQ 595
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 188 (71.2 bits), Expect = 2.3e-24, Sum P(3) = 2.3e-24
Identities = 41/109 (37%), Positives = 64/109 (58%)
Query: 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGT 180
+G +RAL+I PTRELA Q+ D + + +R V + GG+ Q + LKA E+VV
Sbjct: 68 RGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVAC 127
Query: 181 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
PGRL + ++ G ++L L VLDEAD+M + G +++ ++ LP
Sbjct: 128 PGRLLDHIAQGT---IDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLP 173
Score = 145 (56.1 bits), Expect = 2.3e-24, Sum P(3) = 2.3e-24
Identities = 30/61 (49%), Positives = 40/61 (65%)
Query: 42 HPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLE-E 100
HP + I G++ PTPIQ IPA G+D++G A+TG+GKT AF LPI+ RL + E
Sbjct: 9 HPAVATGIAAAGYETPTPIQAQAIPAVM-AGRDVMGLAQTGTGKTAAFALPILHRLQQGE 67
Query: 101 R 101
R
Sbjct: 68 R 68
Score = 43 (20.2 bits), Expect = 2.3e-24, Sum P(3) = 2.3e-24
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 255 KRQTLVFSATIAL 267
+RQTL+FSAT+ +
Sbjct: 175 RRQTLLFSATMPI 187
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 181 (68.8 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 50/179 (27%), Positives = 89/179 (49%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
L AL++TPTRELA Q+++ + + I V+ IVGG+ + Q L +P +V+ TPGR
Sbjct: 93 LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGR 152
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
L + + + L L + V+DEADR++ E+ I+ ++P + + T+
Sbjct: 153 LIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 210
Query: 244 TCVTVSSLQRKKRQTLVFSATIALSADFR--KKLKHGSLKLKQSVNGLNSIETLSERAG 300
+Q+ +R L A+S+ ++ +KL+ L + + L+E AG
Sbjct: 211 ------KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG 263
Score = 163 (62.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 40/88 (45%), Positives = 54/88 (61%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
PD E L + AE E + +L + +L ++ +LG+ +PT IQ IP A QG+DI
Sbjct: 7 PDSPTEALQTAAE-EEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLAL-QGRDI 64
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREK 103
IG AETGSGKT AF LPI+ LLE ++
Sbjct: 65 IGLAETGSGKTGAFALPILNALLETPQR 92
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 179 (68.1 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 37/80 (46%), Positives = 55/80 (68%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
E ++E+D ++ ++ L L+K+I +GFK+PTPIQKACIP GKDI A TG+G
Sbjct: 175 EDASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGL-LGKDICACAATGTG 233
Query: 85 KTLAFGLPIMQRLLEEREKA 104
KT AF LP+++RL+ + +A
Sbjct: 234 KTAAFALPVLERLIYKPRQA 253
Score = 169 (64.5 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 38/104 (36%), Positives = 62/104 (59%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
R L++ PTREL +QV K++A+ ++ VGG+ + QE L+A P++++ TPGRL
Sbjct: 257 RVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRL 316
Query: 185 WE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 227
+ L + HL + L +LDEADRM++ +++ II M
Sbjct: 317 IDHLHNCPSFHLSSIEVL---ILDEADRMLDEYFEEQMKEIIRM 357
Score = 41 (19.5 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 256 RQTLVFSATIALSADFRKKLKHGSLK 281
RQT++FSAT+ D K L SLK
Sbjct: 362 RQTMLFSATMT---DEVKDLASVSLK 384
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 268 (99.4 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 75/216 (34%), Positives = 116/216 (53%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
P DA + V E TEF + L LL+++I F +PTP+QK +P A+ G+D+
Sbjct: 129 PVDASGKDVPEP--ITEFTS---PPLDGLLLENIKLARFTKPTPVQKYSVPIVAN-GRDL 182
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135
+ A+TGSGKT F P+ L E K G + + + Y K + A+I+ PTREL
Sbjct: 183 MACAQTGSGKTGGFLFPV----LSESFKTGPSPQPESQ-GSFYQRKAYPTAVIMAPTREL 237
Query: 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
A Q+ D K+ V+ + GG Q R ++ +L+V TPGRL +L+ G+
Sbjct: 238 ATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGK--- 294
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231
+ L + + VLDEADRM++ G +++ I++ MT
Sbjct: 295 ISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMT 330
Score = 40 (19.1 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 255 KRQTLVFSAT 264
+RQTL+FSAT
Sbjct: 334 ERQTLMFSAT 343
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 188 (71.2 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 44/114 (38%), Positives = 65/114 (57%)
Query: 118 YAPKG--HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPE 175
Y PK R +I+ PTRELA+Q ++A +++ VGG+S + QE L+ RP+
Sbjct: 319 YRPKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPD 378
Query: 176 LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+++ TPGR + M V+ T+ VLDEADRM+E+G EL I+ LP
Sbjct: 379 VIIATPGRFIDHMRNSASFAVD--TVEILVLDEADRMLEDGFADELNEILTTLP 430
Score = 148 (57.2 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ + L +++ + +GF +PTPIQ IP A GKD++G A TGSGKT AF +PI+
Sbjct: 256 SFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIAL-MGKDVVGGAVTGSGKTAAFVVPIL 314
Query: 95 QRLLEEREK 103
+RLL +K
Sbjct: 315 ERLLYRPKK 323
Score = 51 (23.0 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 254 KKRQTLVFSATIALSAD 270
K RQT++FSAT+ S D
Sbjct: 431 KSRQTMLFSATMTSSVD 447
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 178 (67.7 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 51/177 (28%), Positives = 82/177 (46%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
L L++TPTRELA Q+ + + I V+ IVGG+ Q +L +P +V+ TPGR
Sbjct: 148 LHTLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPHVVIATPGR 207
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
L + M + L L + V+DEADR++ E+ I+ ++P + + T+
Sbjct: 208 LIDHMENTKGF--NLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLFSATMTK 265
Query: 244 TCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAG 300
V LQR Q V + + A KL+ + + + L+E AG
Sbjct: 266 K---VQKLQRAALQDPVKCSVSSKYATV-DKLQQFYIFIPSKYKDCYLVSILNELAG 318
Score = 167 (63.8 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
EE V+ EI T F EL + +L ++ +LG+K+PT IQ IP A QG+D+IG AE
Sbjct: 69 EETVTTGEIHTSF---KELGVTEVLCEACDQLGWKKPTKIQIEAIPVAL-QGRDVIGLAE 124
Query: 81 TGSGKTLAFGLPIMQRLL 98
TGSGKT AF +P++Q LL
Sbjct: 125 TGSGKTGAFAVPVLQSLL 142
Score = 39 (18.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAI--VDLTNVSVLAN 318
HG + + + LN ++ S + +VA +D+ +V + N
Sbjct: 349 HGQMSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVDCVIN 392
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 181 (68.8 bits), Expect = 3.4e-24, Sum P(4) = 3.4e-24
Identities = 40/105 (38%), Positives = 68/105 (64%)
Query: 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGT 180
K ++ L+I+PTRELA Q+ D+L + + ++ + GG+ ++Q LK + ++VV T
Sbjct: 180 KRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLK-KSQVVVAT 238
Query: 181 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 225
PGRL +L+ G V+L +++ VLDEADRM+E G ++++II
Sbjct: 239 PGRLLDLLQEGS---VDLSQVNYLVLDEADRMLEKGFEEDIKNII 280
Score = 144 (55.7 bits), Expect = 3.4e-24, Sum P(4) = 3.4e-24
Identities = 39/99 (39%), Positives = 52/99 (52%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLG---------FKEPTPIQKACIP 66
P +E E EI+ E D+ +L L PLL L F +PTPIQ P
Sbjct: 87 PQSDIDEYFKENEIAVE-DSL-DLALRPLLSFDYLSLDSSIQAEISKFPKPTPIQAVAWP 144
Query: 67 AAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 105
GKD++G AETGSGKT AFG+P + L+ +++K G
Sbjct: 145 YLL-SGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRG 182
Score = 46 (21.3 bits), Expect = 3.4e-24, Sum P(4) = 3.4e-24
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAI--VDLTNVSVLAN 318
HG L +Q LN ++ + +VA +D+ NV + N
Sbjct: 390 HGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVIN 433
Score = 41 (19.5 bits), Expect = 3.4e-24, Sum P(4) = 3.4e-24
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 255 KRQTLVFSAT 264
KRQTL+F+AT
Sbjct: 287 KRQTLMFTAT 296
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 208 (78.3 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 47/105 (44%), Positives = 65/105 (61%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
RALI+TPTRELALQ KE+ K +R I+GG S + Q L P++++GTPGRL
Sbjct: 150 RALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDDQFAALHENPDIIIGTPGRL 209
Query: 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
++ E +L +L ++ + V DEADR+ E G +LQ II LP
Sbjct: 210 MHVIQ--EMNL-KLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLP 251
Score = 132 (51.5 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
VS+ D E + ++ + + + + L + K I + G+K PTPIQ+ IP
Sbjct: 56 VSDVELDTRELVRAQNKKKKKSGGFQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVIL-D 114
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 105
GKD++ A TGSGKT AF +P+ ++L + + G
Sbjct: 115 GKDVVAMARTGSGKTAAFLVPLFEKLKAPQAQTG 148
Score = 42 (19.8 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 256 RQTLVFSATIA-LSADFRK 273
RQTL+FSAT+ L +F +
Sbjct: 254 RQTLLFSATLPKLIVEFAR 272
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 203 (76.5 bits), Expect = 3.6e-24, Sum P(3) = 3.6e-24
Identities = 46/119 (38%), Positives = 73/119 (61%)
Query: 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA 172
E+ + ++ K R LI++P+RELALQ +KE+ KG +++ V +VGG S E+Q ++
Sbjct: 151 EKLKSHSTKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAG 210
Query: 173 RPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231
P++V+ TPGR L E +L +L ++ + V DEADR+ E G +L I+ LP T
Sbjct: 211 NPDIVIATPGRFLHLKV--EMNL-DLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPST 266
Score = 140 (54.3 bits), Expect = 3.6e-24, Sum P(3) = 3.6e-24
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
L+ L+K+I R GF PTPIQ+ IP + +D++G A TGSGKT AF +P++++L
Sbjct: 98 LNANLLKAIARKGFSVPTPIQRKTIPVIM-EDQDVVGMARTGSGKTAAFVIPMIEKLKSH 156
Query: 101 REKAG 105
K G
Sbjct: 157 STKFG 161
Score = 42 (19.8 bits), Expect = 3.6e-24, Sum P(3) = 3.6e-24
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 256 RQTLVFSATIALS 268
RQTL+FSAT+ S
Sbjct: 267 RQTLLFSATLPKS 279
Score = 42 (19.8 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 59 PIQKACIPAAAHQGKDIIGAAETG 82
P ++ +PAA + D +G A G
Sbjct: 35 PTKRKKVPAAPNVNLDFLGEANAG 58
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 174 (66.3 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
Identities = 35/74 (47%), Positives = 52/74 (70%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
E ++++D ++ ++ L L+K+I +GFK+PTPIQKACIP GKDI A TG+G
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGL-LGKDICACAATGTG 236
Query: 85 KTLAFGLPIMQRLL 98
KT AF LP+++RL+
Sbjct: 237 KTAAFALPVLERLI 250
Score = 174 (66.3 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
Identities = 39/104 (37%), Positives = 62/104 (59%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
R L++ PTREL +QV K++A+ N+ VGG+ + QE L+A P++++ TPGRL
Sbjct: 260 RVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRL 319
Query: 185 WE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 227
+ L + HL + L +LDEADRM++ +++ II M
Sbjct: 320 IDHLHNCPSFHLSSIEVL---ILDEADRMLDEYFEEQMKEIIRM 360
Score = 41 (19.5 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 256 RQTLVFSATIALSADFRKKLKHGSLK 281
RQT++FSAT+ D K L SLK
Sbjct: 365 RQTMLFSATMT---DEVKDLASVSLK 387
Score = 41 (19.5 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 104 AGKMLE-EKGEEAEKYAPK 121
A ++LE EKG+EA + P+
Sbjct: 602 AKRLLEREKGKEASNHEPE 620
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 265 (98.3 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 70/216 (32%), Positives = 119/216 (55%)
Query: 18 DAEEELVSEAE---ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKD 74
DA E++ E + + + E+ L L +I R + +PTP+Q+ IP +G+D
Sbjct: 140 DAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILL-EGRD 198
Query: 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134
++ A+TGSGKT AF PI+ +++++ + +G Y P A+I++PTRE
Sbjct: 199 LMACAQTGSGKTAAFCFPIISGIMKDQH----VQRPRGSRTV-Y-PL----AVILSPTRE 248
Query: 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
LA Q+ D K+ + V+VV GG +Q R L+ +++V TPGRL +L+ E+
Sbjct: 249 LASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLL---ERA 305
Query: 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230
V + + F LDEADRM++ G +++ I++ + M
Sbjct: 306 RVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDM 341
Score = 43 (20.2 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 253 RKKRQTLVFSATIA-----LSADF 271
R RQTL+FSAT L+ADF
Sbjct: 344 RGVRQTLLFSATFPREIQRLAADF 367
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 176 (67.0 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 55/187 (29%), Positives = 88/187 (47%)
Query: 119 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVV 178
AP+ L L++ PTRELA Q++ + + I VR IVGGM Q L +P ++V
Sbjct: 111 APQT-LFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIV 169
Query: 179 GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQ 238
TPGRL + + + L L + +DEADR+++ L II +LP T +
Sbjct: 170 ATPGRLLDHLENTKGF--SLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFS 227
Query: 239 SEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR--KKLKHGSLKLKQSVNGLNSIETLS 296
+ + V SLQR V +++S+ ++ L+ + + L + L+
Sbjct: 228 ATMS---TKVESLQRASLSNPV---RVSVSSKYQTVSTLQSSYICIPHKHKNLYLVYLLN 281
Query: 297 ERAGMRA 303
E AG A
Sbjct: 282 EFAGQSA 288
Score = 167 (63.8 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 11 VVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH 70
V S G A++E + E ++ EL + L ++ +G+K PTPIQ IP A
Sbjct: 25 VSSRG--SAKDETQTSGEEPAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLAL- 81
Query: 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLE 99
+G+D+IG AETGSGKT AF LP++Q L+E
Sbjct: 82 EGRDVIGLAETGSGKTAAFALPMLQALME 110
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 174 (66.3 bits), Expect = 4.6e-24, Sum P(3) = 4.6e-24
Identities = 35/74 (47%), Positives = 52/74 (70%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
E ++++D ++ ++ L L+K+I +GFK+PTPIQKACIP GKDI A TG+G
Sbjct: 199 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGL-LGKDICACAATGTG 257
Query: 85 KTLAFGLPIMQRLL 98
KT AF LP+++RL+
Sbjct: 258 KTAAFALPVLERLI 271
Score = 174 (66.3 bits), Expect = 4.6e-24, Sum P(3) = 4.6e-24
Identities = 39/104 (37%), Positives = 62/104 (59%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
R L++ PTREL +QV K++A+ N+ VGG+ + QE L+A P++++ TPGRL
Sbjct: 281 RVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRL 340
Query: 185 WE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 227
+ L + HL + L +LDEADRM++ +++ II M
Sbjct: 341 IDHLHNCPSFHLSSIEVL---ILDEADRMLDEYFEEQMKEIIRM 381
Score = 41 (19.5 bits), Expect = 4.6e-24, Sum P(3) = 4.6e-24
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 256 RQTLVFSATIALSADFRKKLKHGSLK 281
RQT++FSAT+ D K L SLK
Sbjct: 386 RQTMLFSATMT---DEVKDLASVSLK 408
Score = 41 (19.5 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 104 AGKMLE-EKGEEAEKYAPK 121
A ++LE EKG+EA + P+
Sbjct: 623 AKRLLEREKGKEASNHEPE 641
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 196 (74.1 bits), Expect = 5.3e-24, Sum P(3) = 5.3e-24
Identities = 43/104 (41%), Positives = 65/104 (62%)
Query: 127 LIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 185
L++ PTRELA+QV + AK + N V+PI GG S ++Q LK P+++VGTPGR+
Sbjct: 77 LVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGTPGRVM 136
Query: 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+ M G ++L TL VLDEAD M++ G +++ I++ P
Sbjct: 137 DHMRRGT---LKLETLQALVLDEADEMLKMGFIDDIEWILEHTP 177
Score = 144 (55.7 bits), Expect = 5.3e-24, Sum P(3) = 5.3e-24
Identities = 31/73 (42%), Positives = 50/73 (68%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACI-PAAAHQGKDIIGAAETGSGKTL 87
+S++ + EL L L++++ LG+++PTPIQ A I P A GKDI+G A+TG+GKT
Sbjct: 1 MSSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMA--GKDILGQAQTGTGKTG 58
Query: 88 AFGLPIMQRLLEE 100
AF LP++ ++ +
Sbjct: 59 AFALPLLNKVTSQ 71
Score = 38 (18.4 bits), Expect = 5.3e-24, Sum P(3) = 5.3e-24
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 294 TLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
T+ E+ AN + + TN+S+ A+ IE
Sbjct: 188 TMPEQIKRVANKHLKNATNISIAASHTTVDSIE 220
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 176 (67.0 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 36/80 (45%), Positives = 55/80 (68%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
E ++++D ++ ++ L L+K+I +GFK+PTPIQKACIP GKDI A TG+G
Sbjct: 209 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGL-LGKDICACAATGTG 267
Query: 85 KTLAFGLPIMQRLLEEREKA 104
KT AF LP+++RL+ + +A
Sbjct: 268 KTAAFALPVLERLIYKPRQA 287
Score = 171 (65.3 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 38/104 (36%), Positives = 62/104 (59%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
R L++ PTREL +QV +++A+ N+ VGG+ + QE L+A P++++ TPGRL
Sbjct: 291 RVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRL 350
Query: 185 WE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 227
+ L + HL + L +LDEADRM++ +++ II M
Sbjct: 351 IDHLHNCPSFHLSSIEVL---ILDEADRMLDEYFEEQMKEIIRM 391
Score = 44 (20.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 103 KAGKMLEEKGEEAEKY------APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
+AG+ + GE+ K A K ++A I+ P +++ L+ D ++++ K + V+
Sbjct: 559 RAGRSVSLVGEDERKMLKEIVKAAKAPVKARIL-P-QDVILKFRDKIEKMEKDVYA-VLQ 615
Query: 157 IVGG----MSTEKQ----ERLLKARPELVVGTPGRLW 185
+ +E Q +RLL+ E VV P R W
Sbjct: 616 LEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSW 652
Score = 41 (19.5 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 256 RQTLVFSATIALSADFRKKLKHGSLK 281
RQT++FSAT+ D K L SLK
Sbjct: 396 RQTMLFSATMT---DEVKDLASVSLK 418
Score = 41 (19.5 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 95 QRLLEERE-KAGKMLEEKGEEAEKYAPK 121
+R E++E K+GK+ +EK E E PK
Sbjct: 127 KRKTEDKEAKSGKLEKEK-EAKEGSEPK 153
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 241 (89.9 bits), Expect = 5.6e-24, Sum P(3) = 5.6e-24
Identities = 65/190 (34%), Positives = 104/190 (54%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E L L +++ R G+ + TP+QK IP G+D++ A+TGSGKT AF LPI+
Sbjct: 276 FEEANLCETLRRNVARAGYVKLTPVQKHSIPIIM-AGRDLMACAQTGSGKTAAFLLPILS 334
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ E A + L+ +E E A+II PTREL Q+ ++ + G VR V
Sbjct: 335 YMMNEGITASQYLQL--QEPE---------AIIIAPTRELINQIYLDARKFSYGTCVRPV 383
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG+ R ++ ++ TPGRL +++S K + L L + VLDEADRM++
Sbjct: 384 VVYGGIQPVHAMRDVEKGCNILCATPGRLLDIVS---KEKIGLSKLRYLVLDEADRMLDM 440
Query: 216 GHFRELQSII 225
G E++ ++
Sbjct: 441 GFAPEIEKLM 450
Score = 47 (21.6 bits), Expect = 5.6e-24, Sum P(3) = 5.6e-24
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 253 RKKRQTLVFSAT 264
++KRQTL+FSAT
Sbjct: 458 KEKRQTLMFSAT 469
Score = 40 (19.1 bits), Expect = 5.6e-24, Sum P(3) = 5.6e-24
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 9 VVVVSNGPDDAEEELVSEAEISTEFDAWNEL 39
V + P D E+ + + + FD ++E+
Sbjct: 230 VTYIPPPPPDGEDNIFRQYQSGINFDKYDEI 260
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 189 (71.6 bits), Expect = 6.5e-24, Sum P(3) = 6.5e-24
Identities = 40/104 (38%), Positives = 66/104 (63%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
+ LI+TPTRELALQV D + ++ K + VR + + GG + E+Q R L+ E++VGTPGR+
Sbjct: 71 QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRI 130
Query: 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 228
+ + G K + +LDEAD M++ G ++++I++ L
Sbjct: 131 LDHI--GRKTFPAAE-IKIVILDEADEMLDMGFIDDIEAILNTL 171
Score = 142 (55.0 bits), Expect = 6.5e-24, Sum P(3) = 6.5e-24
Identities = 31/75 (41%), Positives = 50/75 (66%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
+ + +L L L+K++ LGF+ PTPIQK IP +G +++G A TG+GKT A+ LP+
Sbjct: 2 EEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLIL-EGHNLVGQAPTGTGKTAAYLLPV 60
Query: 94 MQRLLEEREKAGKML 108
+QR+ +R K ++L
Sbjct: 61 LQRI--QRGKKAQVL 73
Score = 39 (18.8 bits), Expect = 6.5e-24, Sum P(3) = 6.5e-24
Identities = 7/11 (63%), Positives = 11/11 (100%)
Query: 255 KRQTLVFSATI 265
++QTL+FSAT+
Sbjct: 174 RQQTLLFSATL 184
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 189 (71.6 bits), Expect = 6.5e-24, Sum P(3) = 6.5e-24
Identities = 40/104 (38%), Positives = 66/104 (63%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
+ LI+TPTRELALQV D + ++ K + VR + + GG + E+Q R L+ E++VGTPGR+
Sbjct: 71 QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRI 130
Query: 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 228
+ + G K + +LDEAD M++ G ++++I++ L
Sbjct: 131 LDHI--GRKTFPAAE-IKIVILDEADEMLDMGFIDDIEAILNTL 171
Score = 142 (55.0 bits), Expect = 6.5e-24, Sum P(3) = 6.5e-24
Identities = 31/75 (41%), Positives = 50/75 (66%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
+ + +L L L+K++ LGF+ PTPIQK IP +G +++G A TG+GKT A+ LP+
Sbjct: 2 EEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLIL-EGHNLVGQAPTGTGKTAAYLLPV 60
Query: 94 MQRLLEEREKAGKML 108
+QR+ +R K ++L
Sbjct: 61 LQRI--QRGKKAQVL 73
Score = 39 (18.8 bits), Expect = 6.5e-24, Sum P(3) = 6.5e-24
Identities = 7/11 (63%), Positives = 11/11 (100%)
Query: 255 KRQTLVFSATI 265
++QTL+FSAT+
Sbjct: 174 RQQTLLFSATL 184
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 176 (67.0 bits), Expect = 7.3e-24, Sum P(3) = 7.3e-24
Identities = 36/80 (45%), Positives = 55/80 (68%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
E ++++D ++ ++ L L+K+I +GFK+PTPIQKACIP GKDI A TG+G
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGL-LGKDICACAATGTG 236
Query: 85 KTLAFGLPIMQRLLEEREKA 104
KT AF LP+++RL+ + +A
Sbjct: 237 KTAAFALPVLERLIYKPRQA 256
Score = 169 (64.5 bits), Expect = 7.3e-24, Sum P(3) = 7.3e-24
Identities = 38/104 (36%), Positives = 62/104 (59%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
R L++ PTREL +QV K++A+ ++ VGG+ + QE L+A P++++ TPGRL
Sbjct: 260 RVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRL 319
Query: 185 WE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 227
+ L + HL + L +LDEADRM++ +++ II M
Sbjct: 320 IDHLHNCPSFHLSSIEVL---ILDEADRMLDEYFEEQMKEIIRM 360
Score = 41 (19.5 bits), Expect = 7.3e-24, Sum P(3) = 7.3e-24
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 256 RQTLVFSATIALSADFRKKLKHGSLK 281
RQT++FSAT+ D K L SLK
Sbjct: 365 RQTMLFSATMT---DEVKDLASVSLK 387
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 280 (103.6 bits), Expect = 7.4e-24, P = 7.4e-24
Identities = 66/167 (39%), Positives = 106/167 (63%)
Query: 54 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113
F++P+PIQ P G+D+IG A+TGSGKTLAFG+P + +L++ +K G G
Sbjct: 134 FEKPSPIQSHTWPFLL-DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGG-----G- 186
Query: 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKAR 173
++K P L+++PTRELA+Q++D L+E + ++ + + GG S Q +++
Sbjct: 187 -SKKVNPT----CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSG 241
Query: 174 PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 220
++V+GTPGRL +L+ E +++ L +SF VLDEADRM++ G F E
Sbjct: 242 VDIVIGTPGRLRDLI---ESNVLRLSDVSFVVLDEADRMLDMG-FEE 284
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 177 (67.4 bits), Expect = 7.5e-24, Sum P(2) = 7.5e-24
Identities = 48/179 (26%), Positives = 89/179 (49%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
L AL++TPTRELA Q+++ + + I V+ IVGG+ + Q L +P +++ TPGR
Sbjct: 93 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGR 152
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
L + + + L L + V+DEADR++ E+ I+ ++P + + T+
Sbjct: 153 LIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 210
Query: 244 TCVTVSSLQRKKRQTLVFSATIALSADFR--KKLKHGSLKLKQSVNGLNSIETLSERAG 300
+Q+ +R L A+S+ ++ +KL+ + + + L+E AG
Sbjct: 211 ------KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG 263
Score = 163 (62.4 bits), Expect = 7.5e-24, Sum P(2) = 7.5e-24
Identities = 39/90 (43%), Positives = 56/90 (62%)
Query: 14 NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
+ P +A + +V E E T + +L + +L ++ +LG+ +PT IQ IP A QG+
Sbjct: 8 DSPTEASQPIVEEEETKT----FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGR 62
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREK 103
DIIG AETGSGKT AF LPI+ LLE ++
Sbjct: 63 DIIGLAETGSGKTGAFALPILNALLETPQR 92
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 181 (68.8 bits), Expect = 7.7e-24, Sum P(2) = 7.7e-24
Identities = 39/111 (35%), Positives = 63/111 (56%)
Query: 119 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVV 178
AP+ L AL++TPTRELA Q+++ + + I V IVGG+ + Q L +P +++
Sbjct: 90 APQ-RLFALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIII 148
Query: 179 GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
TPGRL + + + L L F V+DEADR++ E+ I+ ++P
Sbjct: 149 ATPGRLVDHLENTKGF--NLRALKFLVMDEADRILNMDFETEVDKILKVIP 197
Score = 158 (60.7 bits), Expect = 7.7e-24, Sum P(2) = 7.7e-24
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGK 85
E + E ++ +L + +L ++ +LG+K PT IQ IP A QG+DIIG AETGSGK
Sbjct: 17 EVPVVEEARSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVAL-QGRDIIGLAETGSGK 75
Query: 86 TLAFGLPIMQRLLEEREK 103
T AF LPI+Q LL+ ++
Sbjct: 76 TGAFALPILQALLDAPQR 93
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 171 (65.3 bits), Expect = 9.4e-24, Sum P(2) = 9.4e-24
Identities = 34/63 (53%), Positives = 46/63 (73%)
Query: 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
ELRL L++ +LG K+PTP+Q CIPA +G+D +G A+TGSGKT AF LPI+Q+L
Sbjct: 6 ELRLSSWLVEQCRQLGLKQPTPVQLGCIPAIL-EGRDCLGCAKTGSGKTAAFVLPILQKL 64
Query: 98 LEE 100
E+
Sbjct: 65 SED 67
Score = 170 (64.9 bits), Expect = 9.4e-24, Sum P(2) = 9.4e-24
Identities = 40/113 (35%), Positives = 65/113 (57%)
Query: 120 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVG 179
P G + L++TPTRELA Q+ + + + K + ++ IVGGM Q L +P +V+
Sbjct: 68 PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKPHVVIA 126
Query: 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG--HFR-ELQSIIDMLP 229
TPGRL + + + + + F VLDEADR++E G F +L++I+ +P
Sbjct: 127 TPGRLADHLRSS--NTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVP 177
Score = 52 (23.4 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 236 EGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+G ++ T T+ S +RQTL+FSAT+
Sbjct: 160 QGCTDFTADLETILSAVPARRQTLLFSATL 189
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 181 (68.8 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 50/179 (27%), Positives = 89/179 (49%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
L AL++TPTRELA Q+++ + + I V+ IVGG+ + Q L +P +V+ TPGR
Sbjct: 93 LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGR 152
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
L + + + L L + V+DEADR++ E+ I+ ++P + + T+
Sbjct: 153 LIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 210
Query: 244 TCVTVSSLQRKKRQTLVFSATIALSADFR--KKLKHGSLKLKQSVNGLNSIETLSERAG 300
+Q+ +R L A+S+ ++ +KL+ L + + L+E AG
Sbjct: 211 ------KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG 263
Score = 157 (60.3 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 39/88 (44%), Positives = 53/88 (60%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
PD L + AE E + +L + +L ++ +LG+ +PT IQ IP A QG+DI
Sbjct: 7 PDSPSGALQTAAE-EEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLAL-QGRDI 64
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREK 103
IG AETGSGKT AF LPI+ LLE ++
Sbjct: 65 IGLAETGSGKTGAFALPILNALLETPQR 92
>SGD|S000004266 [details] [associations]
symbol:DBP9 "DEAD-box protein required for 27S rRNA
processing" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000463 "maturation
of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0033680 "ATP-dependent DNA/RNA helicase
activity" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004266 GO:GO:0005524
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0004004 GO:GO:0033680 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:U17245 KO:K14810 HOGENOM:HOG000253015
OMA:TFLMSAT OrthoDB:EOG4DFSWQ EMBL:AY723847 PIR:S51412
RefSeq:NP_013378.1 ProteinModelPortal:Q06218 SMR:Q06218
DIP:DIP-4771N IntAct:Q06218 MINT:MINT-487200 STRING:Q06218
PaxDb:Q06218 PeptideAtlas:Q06218 EnsemblFungi:YLR276C GeneID:850982
KEGG:sce:YLR276C CYGD:YLR276c GeneTree:ENSGT00550000074946
NextBio:967498 Genevestigator:Q06218 GermOnline:YLR276C
Uniprot:Q06218
Length = 594
Score = 279 (103.3 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 78/215 (36%), Positives = 124/215 (57%)
Query: 20 EEELVSEAEI--STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
E++ V A I ST F+A++ L L+++I +GF+ PT IQ IP A Q +DII
Sbjct: 4 EKKSVEGAYIDDSTTFEAFH---LDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIA 60
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137
A TGSGKTLA+ +P+++ +LE ++ + GEE G L +I+ PTRELA
Sbjct: 61 KAATGSGKTLAYLIPVIETILEYKKTI-----DNGEE------NGTL-GIILVPTRELAQ 108
Query: 138 QVTDHLKEVAK--GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
QV + L+++ ++R + I MS LL +PE++VGTPG+L +L+ + +
Sbjct: 109 QVYNVLEKLVLYCSKDIRTLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQT-KINS 167
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230
+ L+ L F V+DE D ++ G+ +L I + LP+
Sbjct: 168 ISLNELKFLVVDEVDLVLTFGYQDDLNKIGEYLPL 202
>SGD|S000002189 [details] [associations]
symbol:DBP10 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
GO:GO:0000466 Uniprot:Q12389
Length = 995
Score = 191 (72.3 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 42/119 (35%), Positives = 72/119 (60%)
Query: 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA 172
E+ + ++ K RA+I++P+RELA+Q + K+ A+G +R V + GG S E+Q ++
Sbjct: 197 EKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMT 256
Query: 173 RPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231
P++++ TPGR L E +L +L ++ + V DEADR+ E G +L ++ LP T
Sbjct: 257 NPDVIIATPGRFLHLKV--EMNL-DLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTT 312
Score = 147 (56.8 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
L +++ +I R GF++PTPIQ+ IP Q +DI+G A TGSGKT AF LP++++L
Sbjct: 144 LSKIVLNNIKRKGFRQPTPIQRKTIPLIL-QSRDIVGMARTGSGKTAAFILPMVEKLKSH 202
Query: 101 REKAG 105
K G
Sbjct: 203 SGKIG 207
Score = 46 (21.3 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 256 RQTLVFSATIALS-ADFRK 273
RQTL+FSAT+ S DF K
Sbjct: 313 RQTLLFSATLPNSLVDFVK 331
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 171 (65.3 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 38/72 (52%), Positives = 50/72 (69%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGK 85
+AE+ +F + EL L P L++SI + F +PTPIQ IP A +GKDIIG A+TGSGK
Sbjct: 117 DAEL--KFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHAL-EGKDIIGLAQTGSGK 173
Query: 86 TLAFGLPIMQRL 97
T AF +PI+Q L
Sbjct: 174 TAAFAIPILQSL 185
Score = 160 (61.4 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 35/105 (33%), Positives = 57/105 (54%)
Query: 126 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 185
AL++ PTREL Q+ D + + +R IVGGM Q R L +P ++V TPGR+
Sbjct: 194 ALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIM 253
Query: 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230
+ + + L L + V+DEADR+++ L I+ ++P+
Sbjct: 254 DHLEHTKGF--SLKNLKYLVMDEADRLLDMDFGPALDKILKVIPI 296
Score = 46 (21.3 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 262 SATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAI--VDLTNVSVLAN 318
+A +A F HG L Q + LN ++ + +VA +D+ +V V+ N
Sbjct: 378 TALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVIN 436
Score = 37 (18.1 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 255 KRQTLVFSATIALSADFRKKLKHGSL 280
KR T +FSAT+ + KL+ SL
Sbjct: 297 KRTTYLFSATMTNKIE---KLQRASL 319
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 181 (68.8 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 40/88 (45%), Positives = 59/88 (67%)
Query: 20 EEELVSEAEISTEFD---AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
++E S E ++E+D ++ ++ L L+K+I LGFK+PTPIQKACIP GKDI
Sbjct: 163 QKEAESFFEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGL-LGKDIC 221
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKA 104
A TG+GKT AF LP+++RL+ + +A
Sbjct: 222 ACAATGTGKTAAFILPVLERLIYKPRQA 249
Score = 160 (61.4 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 37/102 (36%), Positives = 61/102 (59%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
R L++ PTREL +QV K++A+ +V VGG+ + QE L++ P++++ TPGRL
Sbjct: 253 RVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSGPDILIATPGRL 312
Query: 185 WE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 225
+ L + HL + L +LDEADRM++ +++ II
Sbjct: 313 IDHLHNCPSFHLSSVEVL---ILDEADRMLDEYFEEQMKEII 351
Score = 40 (19.1 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 240 EQTQTCVTVSSLQRKKRQTLVFSATI 265
EQ + + + S + RQT++FSAT+
Sbjct: 345 EQMKEIIRLCS---RHRQTMLFSATM 367
Score = 39 (18.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 94 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134
MQ+ + KA K LEE +EA A KG R+ TRE
Sbjct: 585 MQQSEAQINKAKKQLEEGKQEA---ATKGVERSWF--QTRE 620
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 268 (99.4 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 71/213 (33%), Positives = 114/213 (53%)
Query: 18 DAEEELVSEAEISTEFDAWNELRLHPLLMKSIY-RLGFKEPTPIQKACIPAAAHQGKDII 76
D + V ++ W+ L L L I+ +L F++P+ IQ +P G+D+I
Sbjct: 277 DLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTIL-SGRDVI 335
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
G A+TGSGKTL++ LP+++ + +++ + +G P G LI++PTRELA
Sbjct: 336 GIAKTGSGKTLSYVLPMLRHIQDQQFSK----DNQG-------PIG----LILSPTRELA 380
Query: 137 LQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
LQ+ + K N+RV GG S E Q LK E++VGTPGR+ +L++ +
Sbjct: 381 LQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRV 440
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDML 228
+ L +F VLDEADRM + G ++ I+ +
Sbjct: 441 LNLKRCTFVVLDEADRMFDLGFEPQVNKILTQI 473
Score = 39 (18.8 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 253 RKKRQTLVFSAT 264
R RQT++FSAT
Sbjct: 474 RPDRQTVLFSAT 485
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 268 (99.4 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 71/213 (33%), Positives = 114/213 (53%)
Query: 18 DAEEELVSEAEISTEFDAWNELRLHPLLMKSIY-RLGFKEPTPIQKACIPAAAHQGKDII 76
D + V ++ W+ L L L I+ +L F++P+ IQ +P G+D+I
Sbjct: 277 DLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTIL-SGRDVI 335
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
G A+TGSGKTL++ LP+++ + +++ + +G P G LI++PTRELA
Sbjct: 336 GIAKTGSGKTLSYVLPMLRHIQDQQFSK----DNQG-------PIG----LILSPTRELA 380
Query: 137 LQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
LQ+ + K N+RV GG S E Q LK E++VGTPGR+ +L++ +
Sbjct: 381 LQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRV 440
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDML 228
+ L +F VLDEADRM + G ++ I+ +
Sbjct: 441 LNLKRCTFVVLDEADRMFDLGFEPQVNKILTQI 473
Score = 39 (18.8 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 253 RKKRQTLVFSAT 264
R RQT++FSAT
Sbjct: 474 RPDRQTVLFSAT 485
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 260 (96.6 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 69/210 (32%), Positives = 110/210 (52%)
Query: 28 EIST-EFDAWNELRLHPL---LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
E+S + + NE PL L+++I G+ +PTP+QK IP G+D++ A+TGS
Sbjct: 159 EVSGGDIEPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVT-SGRDLMACAQTGS 217
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP-KGHLRALIITPTRELALQVTDH 142
GKT F PI+ ++ A + ++ G Y P K + LI+ PTREL Q+ +
Sbjct: 218 GKTAGFLFPILSLAFDKGPAAVPVDQDAGMG---YRPRKAYPTTLILAPTRELVCQIHEE 274
Query: 143 LKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202
++ VR + GG Q R + +L+ TPGRL +L+ G + L +
Sbjct: 275 SRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGR---ISLANIK 331
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTN 232
F VLDEADRM++ G +++ I++ MT+
Sbjct: 332 FLVLDEADRMLDMGFEPQIRHIVEGADMTS 361
Score = 42 (19.8 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 254 KKRQTLVFSATIA-----LSADFRK 273
++RQTL+FSAT L+ DF K
Sbjct: 363 EERQTLMFSATFPRDIQLLARDFLK 387
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 178 (67.7 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 55/184 (29%), Positives = 89/184 (48%)
Query: 127 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 186
L++TPTRELA Q+ + + GI + IVGG+ Q L RP ++V TPGRL +
Sbjct: 116 LVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVD 175
Query: 187 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCV 246
+ + L L F ++DEADR++ EL I+ ++P + + T+
Sbjct: 176 HLENTKGF--NLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLFSATMTKK-- 231
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRK--KLKHGSLKLKQSVNGLNSIETLSERAGMRAN 304
VS L+R +L A +++S+ ++ LK + + + L+E AG N
Sbjct: 232 -VSKLERA---SLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAG---N 284
Query: 305 VAIV 308
AIV
Sbjct: 285 SAIV 288
Score = 159 (61.0 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 35/79 (44%), Positives = 52/79 (65%)
Query: 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
EE+ + E + ++ EL + L + RLG+ +P+ IQ+A +P A QGKD+IG AE
Sbjct: 31 EEIEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHAL-QGKDVIGLAE 89
Query: 81 TGSGKTLAFGLPIMQRLLE 99
TGSGKT AF +P++Q LL+
Sbjct: 90 TGSGKTGAFAIPVLQSLLD 108
Score = 42 (19.8 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 126 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ 166
A++ T +Q+ L++ + ++ VP+ G MS EK+
Sbjct: 286 AIVFCATCATTMQIAVMLRQ----LGMQAVPLHGQMSQEKR 322
Score = 40 (19.1 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 23/91 (25%), Positives = 42/91 (46%)
Query: 237 GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLK-----QSVNGLNS 291
GQ Q + +++ + K R+ LV + A D + H + + QS + ++
Sbjct: 315 GQMSQEKRLGSLNKFKSKAREILVCTDVAARGLD----IPHVDMVINYDMPSQSKDYVHR 370
Query: 292 IETLSERAGMRANVAIVDLTNVSVLA-NKLE 321
+ + RAG R+ +AI +T V A K+E
Sbjct: 371 VGRTA-RAG-RSGIAITVVTQYDVEAYQKIE 399
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 173 (66.0 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 48/142 (33%), Positives = 75/142 (52%)
Query: 101 REKAGKMLEEKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIV 158
R +GK + +K+A P G + A+I+TPTRELALQ+ + +K ++ +++ V I
Sbjct: 140 RTGSGKTIAFSVPILQKWAEDPFG-IFAVILTPTRELALQIFEQIKAISAPQSMKPVLIT 198
Query: 159 GGMSTEKQERLLKARPELVVGTPGRLWE-LMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
GG Q L RP +VV TPGRL + + + G + L + VLDEADR++ G
Sbjct: 199 GGTDMRSQAIELAGRPHVVVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGP 258
Query: 218 FRELQSIIDMLPMTNGSNEGQS 239
L + L G ++ Q+
Sbjct: 259 GSMLPDVETCLSFLPGPSQRQT 280
Score = 162 (62.1 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 36/91 (39%), Positives = 58/91 (63%)
Query: 13 SNGPDDAEEELVSEA-EI--STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA 69
S+ DD L+ +A EI + E +++ L + P L+ S+ + ++PT IQ+ACIP
Sbjct: 71 SSRKDDENPVLIKDALEIGLNAEENSFKALNVAPWLVGSLTTMAVRKPTAIQRACIPEIL 130
Query: 70 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
+G+D IG + TGSGKT+AF +PI+Q+ E+
Sbjct: 131 -KGRDCIGGSRTGSGKTIAFSVPILQKWAED 160
Score = 40 (19.1 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 243 QTCVTVSSLQRKKRQTLVFSATI 265
+TC++ +RQTL+F+AT+
Sbjct: 266 ETCLSFLP-GPSQRQTLLFTATL 287
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 252 (93.8 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 65/192 (33%), Positives = 105/192 (54%)
Query: 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
+L L +M+ + GF + TPIQ+ +P + GKD+ G A+TG+GKT AF + + +L
Sbjct: 5 DLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLG-GKDVAGQAQTGTGKTAAFLISLFTKL 63
Query: 98 LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
L ++G+ GE + H RA+I+ PTREL +Q+ + + + I
Sbjct: 64 L----RSGR----GGE-------RRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAI 108
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
GG+ KQ+ LK ++VVGTPGRL + + ++ + L + V+DEADRM + G
Sbjct: 109 YGGVDYMKQKNALKEGADVVVGTPGRLIDYL---KQKVYSLKEIEMLVIDEADRMFDMGF 165
Query: 218 FRELQSIIDMLP 229
+L+ I+ LP
Sbjct: 166 IADLRFILRRLP 177
Score = 41 (19.5 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 255 KRQTLVFSATI 265
KRQ L+FSAT+
Sbjct: 181 KRQNLMFSATL 191
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 185 (70.2 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
Identities = 41/107 (38%), Positives = 69/107 (64%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPG 182
++ L++ PTRELA QV ++ +A+GI NV+V+ + GG+ Q L+ ++VGTPG
Sbjct: 70 IQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPG 129
Query: 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
R+ + + +++ ++L L+ VLDEADRM+E G +L +II+ P
Sbjct: 130 RIVDHL---DRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSP 173
Score = 134 (52.2 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
A++ L+L L++++ +G+ E TPIQ +PA G+D+IG +TGSGKT AFGL ++
Sbjct: 2 AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAIL-AGEDVIGQGKTGSGKTAAFGLGLL 60
Query: 95 QRL 97
+L
Sbjct: 61 NKL 63
Score = 49 (22.3 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 254 KKRQTLVFSATIALSAD-FRKKLKHGSLKLKQSV-NGLNSIE 293
++RQTL+FSAT K++ + + +K +V + N+IE
Sbjct: 174 RERQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIE 215
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 185 (70.2 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
Identities = 41/107 (38%), Positives = 69/107 (64%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPG 182
++ L++ PTRELA QV ++ +A+GI NV+V+ + GG+ Q L+ ++VGTPG
Sbjct: 70 IQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPG 129
Query: 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
R+ + + +++ ++L L+ VLDEADRM+E G +L +II+ P
Sbjct: 130 RIVDHL---DRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSP 173
Score = 134 (52.2 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
A++ L+L L++++ +G+ E TPIQ +PA G+D+IG +TGSGKT AFGL ++
Sbjct: 2 AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAIL-AGEDVIGQGKTGSGKTAAFGLGLL 60
Query: 95 QRL 97
+L
Sbjct: 61 NKL 63
Score = 49 (22.3 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 254 KKRQTLVFSATIALSAD-FRKKLKHGSLKLKQSV-NGLNSIE 293
++RQTL+FSAT K++ + + +K +V + N+IE
Sbjct: 174 RERQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIE 215
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 174 (66.3 bits), Expect = 2.3e-23, Sum P(3) = 2.3e-23
Identities = 38/86 (44%), Positives = 54/86 (62%)
Query: 18 DAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
D E +A E ++++ L L+K+I +GFK+PTPIQKAC+P GKDI
Sbjct: 185 DTTEGFFEDASQYDENLTFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGL-LGKDICA 243
Query: 78 AAETGSGKTLAFGLPIMQRLL-EERE 102
A TG+GKT AF LP+++RL+ + RE
Sbjct: 244 CAATGTGKTAAFMLPVLERLIYKPRE 269
Score = 164 (62.8 bits), Expect = 2.3e-23, Sum P(3) = 2.3e-23
Identities = 35/103 (33%), Positives = 59/103 (57%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
R L++ PTREL +QV +++A+ + VGG+ + QE L+A P++++ TPGRL
Sbjct: 274 RVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRAGPDVLIATPGRL 333
Query: 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 227
+ + EL + +LDEADRM++ +++ II M
Sbjct: 334 IDHLHNTPSF--ELSQIEILILDEADRMLDEYFEEQMKEIIRM 374
Score = 44 (20.5 bits), Expect = 2.3e-23, Sum P(3) = 2.3e-23
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 240 EQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSV 286
EQ + + + + QR QT++FSAT++ K L S+ LKQ V
Sbjct: 366 EQMKEIIRMCAYQR---QTMLFSATMSEEV---KDL--ASVSLKQPV 404
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 170 (64.9 bits), Expect = 2.3e-23, Sum P(3) = 2.3e-23
Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
F++++EL L P L+++ L + +PTPIQ IP A +G DIIG A+TGSGKT AF +P
Sbjct: 80 FESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPAL-EGHDIIGLAQTGSGKTAAFAIP 138
Query: 93 IMQRLLEERE 102
I+ RL ++E
Sbjct: 139 ILNRLWHDQE 148
Score = 160 (61.4 bits), Expect = 2.3e-23, Sum P(3) = 2.3e-23
Identities = 37/104 (35%), Positives = 57/104 (54%)
Query: 126 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 185
A I+ PTRELA Q+ + + + VR IVGGM+ Q R L +P +++ TPGRL
Sbjct: 152 ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLM 211
Query: 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+ + + L L F V+DEADR+++ L I+ ++P
Sbjct: 212 DHLENTKGF--SLRKLKFLVMDEADRLLDMEFGPVLDRILKIIP 253
Score = 44 (20.5 bits), Expect = 2.3e-23, Sum P(3) = 2.3e-23
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 254 KKRQTLVFSATIALSADFRKKLKHGSLK--LKQSV-NGLNSIETL 295
++R T +FSAT+ D KL+ SL +K +V N +++TL
Sbjct: 255 QERTTYLFSATMTSKID---KLQRASLTNPVKCAVSNKYQTVDTL 296
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 260 (96.6 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 72/240 (30%), Positives = 120/240 (50%)
Query: 1 MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPI 60
+F N + + N DD + + + I +++ ++ L +L+ +I + +PTP+
Sbjct: 214 IFKKNDDNIGIDFNAYDDDDISIETSEHICAPLNSFADVDLGDVLLGNIKHAKYTKPTPV 273
Query: 61 QKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120
QK+ +P + +D++ A+TGSGKT AF PI+ +L + + G P
Sbjct: 274 QKSALPIIL-KNRDLMACAQTGSGKTAAFLFPIISGILLDGAPEAPPAYKPG------VP 326
Query: 121 KGHL-RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVG 179
+ RAL++ PTRELA Q+ D + + G V V I GG Q L +++V
Sbjct: 327 RAACPRALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVA 386
Query: 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQS 239
T GRL +L+ G V L + + VLDEADRM++ G +++ II M G + Q+
Sbjct: 387 TTGRLVDLLMRGR---VSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMP-GCRDRQT 442
Score = 43 (20.2 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 254 KKRQTLVFSATIA-----LSADF 271
+ RQTL+FSAT L+ADF
Sbjct: 438 RDRQTLMFSATFPKQIQNLAADF 460
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 177 (67.4 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 44/135 (32%), Positives = 70/135 (51%)
Query: 119 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVV 178
AP+G L L + PTRELA Q+ D + I V+ +VGG+ + Q L +P +VV
Sbjct: 184 APQG-LFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVV 242
Query: 179 GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQ 238
G+PGR+ + + L ++ +F++DEADR+ E+ +I+ ++P N
Sbjct: 243 GSPGRVLHHLEHTKGF--NLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKER--NTYL 298
Query: 239 SEQTQTCVTVSSLQR 253
T T V+ LQR
Sbjct: 299 FSATMTS-KVAKLQR 312
Score = 161 (61.7 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
++ ++ E E E + L +HP ++ + +LGF +P IQ+ IP A +G+DII
Sbjct: 102 NNTNQKKSEEEEKKYENVTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWAL-KGRDII 160
Query: 77 GAAETGSGKTLAFGLPIMQRLLE 99
G A+TGSGKT AF +P++Q+LLE
Sbjct: 161 GLAQTGSGKTAAFVIPVLQKLLE 183
Score = 40 (19.1 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 254 KKRQTLVFSATIALSADFRKKLKHGSL--KLK-QSVNGLNSIETLSER 298
K+R T +FSAT+ KL+ SL +K Q + +++TL ++
Sbjct: 292 KERNTYLFSATMTSKV---AKLQRASLVNPVKVQVASKYQTVDTLLQQ 336
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 259 (96.2 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 78/245 (31%), Positives = 127/245 (51%)
Query: 18 DAEEELVSEAEIST--EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
DA +LVS + T ++++ + + +++ R G+ TPIQ+ +P A GKDI
Sbjct: 280 DASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVA-DGKDI 338
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135
+ A+TGSGKT AF LPIM RL+ E++ G E Y P R +I+TPTREL
Sbjct: 339 LACAQTGSGKTAAFLLPIMSRLILEKDL------NYGAEGGCY-P----RCIILTPTREL 387
Query: 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
A Q+ + ++ + + + P+ GG++ + + ++VGT GR+ G
Sbjct: 388 ADQIYNEGRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGA--- 444
Query: 196 VELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 254
++L + VLDEADRMI++ G E++ II+ M N+ + + SS+Q
Sbjct: 445 IKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPK--NDKRQTMMFSATFPSSVQEA 502
Query: 255 KRQTL 259
R+ L
Sbjct: 503 ARKLL 507
Score = 44 (20.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 255 KRQTLVFSATIALSA-DFRKKL 275
KRQT++FSAT S + +KL
Sbjct: 485 KRQTMMFSATFPSSVQEAARKL 506
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 259 (96.2 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 78/245 (31%), Positives = 127/245 (51%)
Query: 18 DAEEELVSEAEIST--EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
DA +LVS + T ++++ + + +++ R G+ TPIQ+ +P A GKDI
Sbjct: 280 DASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVA-DGKDI 338
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135
+ A+TGSGKT AF LPIM RL+ E++ G E Y P R +I+TPTREL
Sbjct: 339 LACAQTGSGKTAAFLLPIMSRLILEKDL------NYGAEGGCY-P----RCIILTPTREL 387
Query: 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
A Q+ + ++ + + + P+ GG++ + + ++VGT GR+ G
Sbjct: 388 ADQIYNEGRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGA--- 444
Query: 196 VELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 254
++L + VLDEADRMI++ G E++ II+ M N+ + + SS+Q
Sbjct: 445 IKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPK--NDKRQTMMFSATFPSSVQEA 502
Query: 255 KRQTL 259
R+ L
Sbjct: 503 ARKLL 507
Score = 44 (20.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 255 KRQTLVFSATIALSA-DFRKKL 275
KRQT++FSAT S + +KL
Sbjct: 485 KRQTMMFSATFPSSVQEAARKL 506
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 268 (99.4 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 66/207 (31%), Positives = 111/207 (53%)
Query: 20 EEEL-VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
E EL V ++ W++ L ++ ++ +L +++P PIQ +P G+D IG
Sbjct: 514 ELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIM-SGRDCIGV 572
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 138
A+TGSGKTL F LP+++ + ++ E G+ P G L++ PTREL Q
Sbjct: 573 AKTGSGKTLGFVLPMLRHIKDQPPV------EAGD-----GPIG----LVMAPTRELVQQ 617
Query: 139 VTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
+ +++ +K + +R VP+ GG +Q LK E+VV TPGR+ +++ + L
Sbjct: 618 IHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNL 677
Query: 199 HTLSFFVLDEADRMIENGHFRELQSII 225
++F V+DEADRM + G ++ II
Sbjct: 678 RRVTFLVMDEADRMFDMGFEPQITRII 704
Score = 41 (19.5 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 253 RKKRQTLVFSAT 264
R +RQT++FSAT
Sbjct: 708 RPERQTVLFSAT 719
>DICTYBASE|DDB_G0292010 [details] [associations]
symbol:DDB_G0292010 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292010 GO:GO:0005524
EMBL:AAFI02000187 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
ProtClustDB:CLSZ2846571 RefSeq:XP_629765.1
ProteinModelPortal:Q54DV7 EnsemblProtists:DDB0184159 GeneID:8628441
KEGG:ddi:DDB_G0292010 InParanoid:Q54DV7 OMA:VESSCKP Uniprot:Q54DV7
Length = 777
Score = 250 (93.1 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 64/182 (35%), Positives = 102/182 (56%)
Query: 57 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLE---ERE-KAGKM-LEEK 111
PTP+Q C P G+DI+ A+TGSGKTL + LP + +LE +R+ + +M ++EK
Sbjct: 312 PTPVQSQCWPGIL-SGQDILSIAQTGSGKTLGYLLPAIPNILEHLRQRKIRRQQMTMQEK 370
Query: 112 GEEAEKYAPKGHLR----ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE 167
E +K + LII PTRELA QV K + N+ + I GG+ +Q+
Sbjct: 371 LENKKKSKLLKNTNMGPMVLIIVPTRELAKQVESSCKPLRSKFNIHSIAIYGGVDANEQK 430
Query: 168 RLL-KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIID 226
+L + E+++ TPGRL +L+ ++ + L + +LDEADRM++ G +LQ I +
Sbjct: 431 DILGQEHNEIIIATPGRLVDLIQRSKEVVGLLGGVGMLILDEADRMLQLGFGDQLQKISE 490
Query: 227 ML 228
+
Sbjct: 491 QI 492
Score = 117 (46.2 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 46/157 (29%), Positives = 69/157 (43%)
Query: 17 DDAEEELVSEAEISTEFDAWN--------ELRLHPLLMKSIYRLGF--------KEPTPI 60
D E + +A +ST FD E + PL MK +GF PTP+
Sbjct: 258 DHREMRIKIKANVSTSFDGQEIPRPIITFEDQDLPLSMKKF--IGFLTTKYPSITAPTPV 315
Query: 61 QKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120
Q C P G+DI+ A+TGSGKTL + LP + +LE + K+ ++ EK
Sbjct: 316 QSQCWPGIL-SGQDILSIAQTGSGKTLGYLLPAIPNILEHLRQR-KIRRQQMTMQEKLEN 373
Query: 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
K + L T + L + +E+AK + P+
Sbjct: 374 KKKSKLLKNTNMGPMVLIIVP-TRELAKQVESSCKPL 409
Score = 54 (24.1 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 248 VSSLQRKKRQTLVFSATIALSA-DFRKKLKHGSLKLKQSVNGLNSIET 294
+S R RQTL+FSAT + D KK LK++ + N T
Sbjct: 488 ISEQIRPDRQTLMFSATFPQTMQDAAKKWLTNPLKIRVKSSSTNQGST 535
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 166 (63.5 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 39/113 (34%), Positives = 65/113 (57%)
Query: 120 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVG 179
P G + L++TPTRELA Q+ + + + K + ++ IVGGM Q L +P +V+
Sbjct: 68 PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIA 126
Query: 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG--HFR-ELQSIIDMLP 229
TPGRL + + ++ + F V+DEADR++E G F +L++I+ +P
Sbjct: 127 TPGRLADHLRSSNTFSIK--KIRFLVMDEADRLLEQGCTDFTVDLEAILAAVP 177
Score = 164 (62.8 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 33/63 (52%), Positives = 45/63 (71%)
Query: 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
EL L L++ +LG K+PTP+Q CIPA +G+D +G A+TGSGKT AF LPI+Q+L
Sbjct: 6 ELGLSSWLVEQCRQLGLKQPTPVQLGCIPAIL-EGRDCLGCAKTGSGKTAAFVLPILQKL 64
Query: 98 LEE 100
E+
Sbjct: 65 SED 67
Score = 43 (20.2 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 255 KRQTLVFSATI 265
+RQTL+FSAT+
Sbjct: 179 RRQTLLFSATL 189
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 166 (63.5 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 39/113 (34%), Positives = 65/113 (57%)
Query: 120 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVG 179
P G + L++TPTRELA Q+ + + + K + ++ IVGGM Q L +P +V+
Sbjct: 68 PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIA 126
Query: 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG--HFR-ELQSIIDMLP 229
TPGRL + + ++ + F V+DEADR++E G F +L++I+ +P
Sbjct: 127 TPGRLADHLRSSNTFSIK--KIRFLVMDEADRLLEQGCTDFTVDLEAILAAVP 177
Score = 164 (62.8 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 33/63 (52%), Positives = 45/63 (71%)
Query: 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
EL L L++ +LG K+PTP+Q CIPA +G+D +G A+TGSGKT AF LPI+Q+L
Sbjct: 6 ELGLSSWLVEQCRQLGLKQPTPVQLGCIPAIL-EGRDCLGCAKTGSGKTAAFVLPILQKL 64
Query: 98 LEE 100
E+
Sbjct: 65 SED 67
Score = 43 (20.2 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 255 KRQTLVFSATI 265
+RQTL+FSAT+
Sbjct: 179 RRQTLLFSATL 189
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 166 (63.5 bits), Expect = 3.1e-23, Sum P(3) = 3.1e-23
Identities = 39/113 (34%), Positives = 65/113 (57%)
Query: 120 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVG 179
P G + L++TPTRELA Q+ + + + K + ++ IVGGM Q L +P +V+
Sbjct: 68 PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIA 126
Query: 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG--HFR-ELQSIIDMLP 229
TPGRL + + ++ + F V+DEADR++E G F +L++I+ +P
Sbjct: 127 TPGRLADHLRSSNTFSIK--KIRFLVMDEADRLLEQGCTDFTVDLEAILAAVP 177
Score = 164 (62.8 bits), Expect = 3.1e-23, Sum P(3) = 3.1e-23
Identities = 33/63 (52%), Positives = 45/63 (71%)
Query: 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
EL L L++ +LG K+PTP+Q CIPA +G+D +G A+TGSGKT AF LPI+Q+L
Sbjct: 6 ELGLSSWLVEQCRQLGLKQPTPVQLGCIPAIL-EGRDCLGCAKTGSGKTAAFVLPILQKL 64
Query: 98 LEE 100
E+
Sbjct: 65 SED 67
Score = 43 (20.2 bits), Expect = 3.1e-23, Sum P(3) = 3.1e-23
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 255 KRQTLVFSATI 265
+RQTL+FSAT+
Sbjct: 179 RRQTLLFSATL 189
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 269 (99.8 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
Identities = 65/191 (34%), Positives = 109/191 (57%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W + ++ +M + + + +PT IQ IP+ G+D+IG A+TGSGKTLAF LP+ +
Sbjct: 306 WAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIM-SGRDVIGIAKTGSGKTLAFLLPMFR 364
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L++ E LEE G+ G + A+I+ PTRELA+Q + AK + ++V
Sbjct: 365 HILDQPE-----LEE-GD--------GPI-AVILAPTRELAMQTYKEANKFAKPLGLKVA 409
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
GG+ +Q LK E+VV TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 410 CTYGGVGISEQIADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDK 469
Query: 216 GHFRELQSIID 226
G ++ +++
Sbjct: 470 GFEPQIMKVVN 480
Score = 37 (18.1 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 241 QTQTCVTVSSLQRKKRQTLVFSAT 264
+ Q V+++ R +QT++FSAT
Sbjct: 472 EPQIMKVVNNI-RPDKQTVLFSAT 494
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 258 (95.9 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 69/216 (31%), Positives = 119/216 (55%)
Query: 18 DAEEEL---VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKD 74
DA E++ S ++ + + ++ L L +I R + PTP+Q+ IP + +D
Sbjct: 132 DAYEDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAE-RD 190
Query: 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134
++ A+TGSGKT AF PI+ +++++ + +G A Y P A+I++PTRE
Sbjct: 191 LMACAQTGSGKTAAFCFPIISGIMKDQH----VERPRGSRAV-Y-PF----AVILSPTRE 240
Query: 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
LA Q+ D K+ + V+VV GG +Q R L+ +++V TPGRL +L+ E+
Sbjct: 241 LACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLL---ERA 297
Query: 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230
V + + F LDEADRM++ G +++ I++ + M
Sbjct: 298 RVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDM 333
Score = 41 (19.5 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 253 RKKRQTLVFSATIA-----LSADF 271
R RQT++FSAT L+ADF
Sbjct: 336 RGVRQTMLFSATFPSQIQRLAADF 359
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 181 (68.8 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 50/179 (27%), Positives = 89/179 (49%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
L AL++TPTRELA Q+++ + + I V+ IVGG+ + Q L +P +V+ TPGR
Sbjct: 92 LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGR 151
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
L + + + L L + V+DEADR++ E+ I+ ++P + + T+
Sbjct: 152 LIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 209
Query: 244 TCVTVSSLQRKKRQTLVFSATIALSADFR--KKLKHGSLKLKQSVNGLNSIETLSERAG 300
+Q+ +R L A+S+ ++ +KL+ L + + L+E AG
Sbjct: 210 ------KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG 262
Score = 152 (58.6 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 38/86 (44%), Positives = 53/86 (61%)
Query: 18 DAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
+A + V E E T + +L + +L ++ +LG+ +PT IQ IP A QG+DIIG
Sbjct: 11 EAPQTAVEEEETKT----FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGRDIIG 65
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREK 103
AETGSGKT AF LPI+ LLE ++
Sbjct: 66 LAETGSGKTGAFALPILNALLETPQR 91
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 185 (70.2 bits), Expect = 3.6e-23, Sum P(2) = 3.6e-23
Identities = 41/104 (39%), Positives = 65/104 (62%)
Query: 127 LIITPTRELALQVTDHLKEVAKGIN-VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 185
L++ PTRELA+QV + + + +K + V VV + GG + Q R L+ P++VVGTPGRL
Sbjct: 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLL 137
Query: 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+ + G ++L LS VLDEAD M+ G ++++I+ +P
Sbjct: 138 DHLKRGT---LDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178
Score = 152 (58.6 bits), Expect = 3.6e-23, Sum P(2) = 3.6e-23
Identities = 35/82 (42%), Positives = 54/82 (65%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
AE T F +L L +++++ LG+++P+PIQ CIP + G+D++G A+TGSGKT
Sbjct: 2 AEFETTFA---DLGLKAPILEALNDLGYEKPSPIQAECIPHLLN-GRDVLGMAQTGSGKT 57
Query: 87 LAFGLPIMQRLLEEREKAGKML 108
AF LP++Q L E KA ++L
Sbjct: 58 AAFSLPLLQNLDPEL-KAPQIL 78
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 259 (96.2 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 68/184 (36%), Positives = 107/184 (58%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
+M +I + +++PT IQ +P G+D+IG A+TGSGKT AF LP++ ++++ E
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVL-SGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPE-- 295
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
+ ++G P G +I PTRELA Q+ K+ +K +RV + GGMS
Sbjct: 296 --LQRDEG-------PIG----VICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKH 342
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
+Q + LKA E+VV TPGRL +++ K L + S+ VLDEADRM + G +++SI
Sbjct: 343 EQFKELKAGCEIVVATPGRLIDMLK--MKALTMMRA-SYLVLDEADRMFDLGFEPQVRSI 399
Query: 225 IDML 228
+ +
Sbjct: 400 VGQI 403
Score = 43 (20.2 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 253 RKKRQTLVFSATI 265
R RQTL+FSAT+
Sbjct: 404 RPDRQTLLFSATM 416
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 194 (73.4 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
Identities = 45/116 (38%), Positives = 70/116 (60%)
Query: 116 EKYAPKGH-LRALIITPTRELALQVTDHLKEV-AKGINVRVVPIVGGMSTEKQERLLKAR 173
EK P+ ++ALI+ PTRELALQ+T +K++ + ++ V+ I GG +Q R LK
Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124
Query: 174 PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+VV TPGRL + + + ++L LS VLDEAD+M+ G +++ I+D P
Sbjct: 125 THIVVATPGRLLDHI---RRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 177
Score = 128 (50.1 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
EL + ++ G E TPIQ+ IP GKDIIG A+TG+GKTLAF LPI++++
Sbjct: 9 ELGISETFNHTLRENGITEATPIQEKAIPVIL-SGKDIIGQAKTGTGKTLAFVLPILEKI 67
Score = 44 (20.5 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 126 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA 172
A+I T+ A ++ D+LK G+ + G + K+ER++K+
Sbjct: 247 AVIFCRTKVRASKLYDNLK----GLGYNCAELHGDIPQAKRERVMKS 289
Score = 40 (19.1 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 256 RQTLVFSATIALSADFRKKLK 276
+QT++FSATI D +K K
Sbjct: 180 KQTMLFSATIP--KDIKKLAK 198
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 194 (73.4 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
Identities = 45/116 (38%), Positives = 70/116 (60%)
Query: 116 EKYAPKGH-LRALIITPTRELALQVTDHLKEV-AKGINVRVVPIVGGMSTEKQERLLKAR 173
EK P+ ++ALI+ PTRELALQ+T +K++ + ++ V+ I GG +Q R LK
Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124
Query: 174 PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+VV TPGRL + + + ++L LS VLDEAD+M+ G +++ I+D P
Sbjct: 125 THIVVATPGRLLDHI---RRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 177
Score = 128 (50.1 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
EL + ++ G E TPIQ+ IP GKDIIG A+TG+GKTLAF LPI++++
Sbjct: 9 ELGISETFNHTLRENGITEATPIQEKAIPVIL-SGKDIIGQAKTGTGKTLAFVLPILEKI 67
Score = 44 (20.5 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 126 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA 172
A+I T+ A ++ D+LK G+ + G + K+ER++K+
Sbjct: 247 AVIFCRTKVRASKLYDNLK----GLGYNCAELHGDIPQAKRERVMKS 289
Score = 40 (19.1 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 256 RQTLVFSATIALSADFRKKLK 276
+QT++FSATI D +K K
Sbjct: 180 KQTMLFSATIP--KDIKKLAK 198
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 187 (70.9 bits), Expect = 4.2e-23, Sum P(3) = 4.2e-23
Identities = 42/121 (34%), Positives = 68/121 (56%)
Query: 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKAR 173
E K G +RA+I++P+RELALQ +KE + G N++ + ++GG S E+ + +
Sbjct: 159 ERLKSRQPGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDFSKMMTK 218
Query: 174 PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNG 233
P+++V TPGR L + +L T+ + V DEADR+ E G +L ++ LP
Sbjct: 219 PDIIVCTPGRFLHLKVEMQ---YDLMTVQYIVFDEADRLFEMGFAEQLNELLASLPSNRQ 275
Query: 234 S 234
S
Sbjct: 276 S 276
Score = 147 (56.8 bits), Expect = 4.2e-23, Sum P(3) = 4.2e-23
Identities = 29/65 (44%), Positives = 45/65 (69%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
L ++ +I + G+K+PTPIQ+ IP +G+D++G A TGSGKT AF LP+++RL +
Sbjct: 106 LTKFILANIAKKGYKQPTPIQRKTIPLIM-EGRDVVGMARTGSGKTAAFVLPLIERL-KS 163
Query: 101 REKAG 105
R+ G
Sbjct: 164 RQPGG 168
Score = 45 (20.9 bits), Expect = 4.2e-23, Sum P(3) = 4.2e-23
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 256 RQTLVFSATIALS-ADFRK 273
RQ+L+FSAT+ S DF K
Sbjct: 274 RQSLLFSATLPRSLVDFAK 292
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 260 (96.6 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 69/184 (37%), Positives = 99/184 (53%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
LMK I GF PTPIQ P A +G+DIIG A+TGSGKTLAF LP + + A
Sbjct: 395 LMKEIIGAGFPNPTPIQSQAWPIAL-KGRDIIGLAKTGSGKTLAFLLPSIVHI-----NA 448
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
+L E G + L++ PTRELALQ+ + + + + GG S
Sbjct: 449 QPVLREDD---------GPI-VLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKH 498
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
Q LK E+V+ TPGRL +++ G+ +L +++ VLDEADRM++ G +++ I
Sbjct: 499 TQVAALKKGVEIVIATPGRLIDILESGKTNL---RRVTYLVLDEADRMLDMGFEPQIRKI 555
Query: 225 IDML 228
I +
Sbjct: 556 ISQI 559
Score = 42 (19.8 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 253 RKKRQTLVFSAT 264
R RQTL+FSAT
Sbjct: 560 RPDRQTLMFSAT 571
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 180 (68.4 bits), Expect = 4.5e-23, Sum P(2) = 4.5e-23
Identities = 50/179 (27%), Positives = 89/179 (49%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
L AL++TPTRELA Q+++ + + I V+ IVGG+ + Q L +P +V+ TPGR
Sbjct: 119 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGR 178
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
L + + + L L + V+DEADR++ E+ I+ ++P + + T+
Sbjct: 179 LIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 236
Query: 244 TCVTVSSLQRKKRQTLVFSATIALSADFR--KKLKHGSLKLKQSVNGLNSIETLSERAG 300
+Q+ +R L A+S+ ++ +KL+ L + + L+E AG
Sbjct: 237 ------KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG 289
Score = 153 (58.9 bits), Expect = 4.5e-23, Sum P(2) = 4.5e-23
Identities = 38/90 (42%), Positives = 54/90 (60%)
Query: 14 NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
+ P + + V E E T + +L + +L ++ +LG+ +PT IQ IP A QG+
Sbjct: 34 DSPAEEPQPAVQEEETKT----FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGR 88
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREK 103
DIIG AETGSGKT AF LPI+ LLE ++
Sbjct: 89 DIIGLAETGSGKTGAFALPILNALLETPQR 118
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 261 (96.9 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 66/193 (34%), Positives = 106/193 (54%)
Query: 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
E+ L L +I R + +PTP+Q+ IP A G+D++ A+TGSGKT AF PI+ +
Sbjct: 150 EIDLGEALNLNIQRCKYVKPTPVQRNAIPILA-AGRDLMACAQTGSGKTAAFCFPIISGI 208
Query: 98 LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
++++ E+ P A+I++PTRELA Q+ D ++ + V+VV
Sbjct: 209 MKDQHI------ERPRGVRGVYPL----AVILSPTRELACQIHDEARKFSYQTGVKVVVA 258
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
GG +Q R L+ +++V TPGRL +L+ G V L + F LDEADRM++ G
Sbjct: 259 YGGTPVNQQIRELERGVDILVATPGRLNDLLERGR---VSLQMVRFLALDEADRMLDMGF 315
Query: 218 FRELQSIIDMLPM 230
+++ I+ + M
Sbjct: 316 EPQIRKIVQQMDM 328
Score = 37 (18.1 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 256 RQTLVFSAT 264
RQT++FSAT
Sbjct: 334 RQTMLFSAT 342
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 272 (100.8 bits), Expect = 5.3e-23, P = 5.3e-23
Identities = 96/311 (30%), Positives = 144/311 (46%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
+TE + +L + +++++ G K P IQ+ +P A G+D+IG A TG GKT AF
Sbjct: 7 TTE-STFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLAL-DGEDVIGQARTGMGKTFAF 64
Query: 90 GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 149
G+P++QR+ +G G AP RAL++ PTREL LQVTD L K
Sbjct: 65 GVPLLQRIT-----SGD-----GTRPLTGAP----RALVVVPTRELCLQVTDDLATAGKY 110
Query: 150 IN----------VR----VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
+ VR VV I GG E Q L+A ++VVGTPGRL +L G HL
Sbjct: 111 LTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQG--HL 168
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK 255
+L LS VLDEAD M++ G +++ I+ +P S + +T++
Sbjct: 169 -QLGGLSVLVLDEADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLA------ 221
Query: 256 RQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSV 315
R +V I A + + + + L+ +E +S R A + T
Sbjct: 222 RTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKR 281
Query: 316 LANKLEESFIE 326
A K+ + E
Sbjct: 282 TAQKVADELTE 292
>UNIPROTKB|F6S4E6 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
IPI:IPI00641634 SMR:F6S4E6 Ensembl:ENST00000415027
Ensembl:ENST00000432189 Ensembl:ENST00000444267
Ensembl:ENST00000444480 Ensembl:ENST00000451051
Ensembl:ENST00000452908 Ensembl:ENST00000456662 Uniprot:F6S4E6
Length = 231
Score = 170 (64.9 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 122 GHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PELVVG 179
G + L++ TRELA Q++ + +K + NV+V GG+S +K E +LK P +VVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171
Query: 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 229
TPGR+ L K L L + F+LDE D+M+E R ++Q I M P
Sbjct: 172 TPGRILALARN--KSL-NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219
Score = 118 (46.6 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 10 VVVSNGPDDAE---EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIP 66
V + G D AE ++ V + +S + + L P L+++I GF+ P+ +Q CIP
Sbjct: 18 VETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP 77
Query: 67 AAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
A G D++ A++G GKT F L +Q+L
Sbjct: 78 QAI-LGMDVLCQAKSGMGKTAVFVLATLQQL 107
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 248 (92.4 bits), Expect = 6.3e-23, Sum P(2) = 6.3e-23
Identities = 66/180 (36%), Positives = 101/180 (56%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
LM I + + +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 259 LMHQIRKSEYTQPTPIQCQGVPVAM-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL- 316
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
E G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 317 -----EPGD--------GPI-AVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMW 362
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
+Q + L+ E+VV TPGRL + + +K L +++ V DEADRM + G +++SI
Sbjct: 363 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSI 419
Score = 51 (23.0 bits), Expect = 6.3e-23, Sum P(2) = 6.3e-23
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRKKLK 276
+++S R RQTL+FSAT FRKK++
Sbjct: 418 SIASHVRPDRQTLLFSAT------FRKKIE 441
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 242 (90.2 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 58/159 (36%), Positives = 94/159 (59%)
Query: 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130
QG+D+I AA+TG+GKT +F LPI+++L + G+ +K +RALI+
Sbjct: 37 QGRDLIAAAQTGTGKTASFVLPILEKL-----RQGQTQRKK-----------RVRALILV 80
Query: 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
PTRELA+QV + +++ K ++ + + GG+ + Q++ L +++V TPGRL +L
Sbjct: 81 PTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMDLY-- 138
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
G++ V + VLDEADRM++ G + IID LP
Sbjct: 139 GQR-AVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP 176
Score = 143 (55.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 28/72 (38%), Positives = 52/72 (72%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++++L L +L++++ +LG+++PT IQ IP QG+D+I AA+TG+GKT +F LPI+
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVIL-QGRDLIAAAQTGTGKTASFVLPIL 60
Query: 95 QRLLEEREKAGK 106
++L + + + K
Sbjct: 61 EKLRQGQTQRKK 72
Score = 43 (20.2 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 294 TLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
TLS + A A+ D +S+ AN+ +S I
Sbjct: 187 TLSRKVRELAKTAVRDPHEISIAANQASKSNI 218
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 242 (90.2 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 58/159 (36%), Positives = 94/159 (59%)
Query: 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130
QG+D+I AA+TG+GKT +F LPI+++L + G+ +K +RALI+
Sbjct: 37 QGRDLIAAAQTGTGKTASFVLPILEKL-----RQGQTQRKK-----------RVRALILV 80
Query: 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
PTRELA+QV + +++ K ++ + + GG+ + Q++ L +++V TPGRL +L
Sbjct: 81 PTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMDLY-- 138
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
G++ V + VLDEADRM++ G + IID LP
Sbjct: 139 GQR-AVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP 176
Score = 143 (55.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 28/72 (38%), Positives = 52/72 (72%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++++L L +L++++ +LG+++PT IQ IP QG+D+I AA+TG+GKT +F LPI+
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVIL-QGRDLIAAAQTGTGKTASFVLPIL 60
Query: 95 QRLLEEREKAGK 106
++L + + + K
Sbjct: 61 EKLRQGQTQRKK 72
Score = 43 (20.2 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 294 TLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
TLS + A A+ D +S+ AN+ +S I
Sbjct: 187 TLSRKVRELAKTAVRDPHEISIAANQASKSNI 218
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 188 (71.2 bits), Expect = 7.0e-23, Sum P(3) = 7.0e-23
Identities = 40/104 (38%), Positives = 61/104 (58%)
Query: 126 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 185
A+I+TPTRELA+Q+ + + +NV ++GG+ Q +L RP ++V TPGRL
Sbjct: 75 AVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDKRPHIIVATPGRLA 134
Query: 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
++ G K + L F VLDEADR++ E+ SI++ LP
Sbjct: 135 SHLNNGLK--IALKFCKFLVLDEADRLLGEDFELEIASILEHLP 176
Score = 131 (51.2 bits), Expect = 7.0e-23, Sum P(3) = 7.0e-23
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L+ + +LGFK P+ IQ IP +G+DII +A+TGSGKT +F +PI+
Sbjct: 6 FEELGLTTWLVANCKQLGFKAPSNIQANTIPEIL-KGRDIIASAKTGSGKTASFAIPILN 64
Query: 96 RLLEE 100
+L E+
Sbjct: 65 QLSED 69
Score = 46 (21.3 bits), Expect = 7.0e-23, Sum P(3) = 7.0e-23
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 254 KKRQTLVFSATI 265
+KRQTL+FSAT+
Sbjct: 179 EKRQTLLFSATM 190
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 265 (98.3 bits), Expect = 7.2e-23, Sum P(2) = 7.2e-23
Identities = 69/190 (36%), Positives = 102/190 (53%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W++ L + I +LGF T IQ IPA G+D+IG A+TGSGKT+AF +P+ +
Sbjct: 543 WSQCGLGIQTLDVIDKLGFASLTSIQAQAIPAIM-SGRDVIGVAKTGSGKTMAFLIPMFR 601
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ ++R E E P G LI+TPTRELA Q+ K K +N+R V
Sbjct: 602 HIKDQRPL---------ENME--GPIG----LIMTPTRELATQIHKDCKPFLKALNLRAV 646
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
GG + Q LK E++V TPGR+ +L++ + L +++ VLDEADRM +
Sbjct: 647 CAYGGAPIKDQIAELKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDM 706
Query: 216 GHFRELQSII 225
G ++ I+
Sbjct: 707 GFEPQVMKIL 716
Score = 40 (19.1 bits), Expect = 7.2e-23, Sum P(2) = 7.2e-23
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 253 RKKRQTLVFSATIA--LSADFRKKL 275
R RQT++FSAT + A RK L
Sbjct: 720 RPDRQTVLFSATFPRNMEALARKTL 744
>GENEDB_PFALCIPARUM|PFB0445c [details] [associations]
symbol:PFB0445c "helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 GenomeReviews:AE001362_GR HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K12812
ProtClustDB:CLSZ2429041 PIR:G71614 RefSeq:XP_001349607.1
ProteinModelPortal:Q9TY94 SMR:Q9TY94 EnsemblProtists:PFB0445c:mRNA
GeneID:812689 KEGG:pfa:PFB0445c EuPathDB:PlasmoDB:PF3D7_0209800
OMA:LECVINY Uniprot:Q9TY94
Length = 457
Score = 248 (92.4 bits), Expect = 9.9e-23, Sum P(2) = 9.9e-23
Identities = 72/230 (31%), Positives = 116/230 (50%)
Query: 5 NCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKAC 64
N G ++ +N A S A + T + + L P L+++I GF+ P+ +Q+
Sbjct: 30 NLGNNILNNNNKGGAMRG--SYATVHT--GGFKDFFLKPELLRAISESGFEHPSEVQQET 85
Query: 65 IPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 124
IPAA G DI+ A++G GKT F L I+Q+L + + +E + +
Sbjct: 86 IPAAI-TGTDILCQAKSGMGKTAVFVLSILQQLDTNENQDMQDTKEMNNDNNNNGDNKFV 144
Query: 125 RALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKAR--PELVVGTP 181
R L + TRELA Q+ + +K + NVR + GG+S K +L K P +++GTP
Sbjct: 145 RCLGLAHTRELAYQIKNEFDRFSKYLKNVRCEVVYGGISMNKHIKLFKEDNIPHIIIGTP 204
Query: 182 GRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLPM 230
GR+ L+ EK+L+ + FVLDE D+ +E R ++Q I P+
Sbjct: 205 GRILALIR--EKYLIT-DKIQHFVLDECDKCLEKLDMRSDVQKIFISTPL 251
Score = 40 (19.1 bits), Expect = 9.9e-23, Sum P(2) = 9.9e-23
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 255 KRQTLVFSATIALSA-DFRKKLKHGSLKL------KQSVNGL-NSIETLSERAGMRANVA 306
K+Q + FSAT+A D KK +++ K ++GL L E+ R +
Sbjct: 252 KKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQEKDKTRKLIE 311
Query: 307 IVD 309
I+D
Sbjct: 312 ILD 314
>UNIPROTKB|Q9TY94 [details] [associations]
symbol:UAP56 "DEAD box helicase, UAP56" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 GenomeReviews:AE001362_GR HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K12812
ProtClustDB:CLSZ2429041 PIR:G71614 RefSeq:XP_001349607.1
ProteinModelPortal:Q9TY94 SMR:Q9TY94 EnsemblProtists:PFB0445c:mRNA
GeneID:812689 KEGG:pfa:PFB0445c EuPathDB:PlasmoDB:PF3D7_0209800
OMA:LECVINY Uniprot:Q9TY94
Length = 457
Score = 248 (92.4 bits), Expect = 9.9e-23, Sum P(2) = 9.9e-23
Identities = 72/230 (31%), Positives = 116/230 (50%)
Query: 5 NCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKAC 64
N G ++ +N A S A + T + + L P L+++I GF+ P+ +Q+
Sbjct: 30 NLGNNILNNNNKGGAMRG--SYATVHT--GGFKDFFLKPELLRAISESGFEHPSEVQQET 85
Query: 65 IPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 124
IPAA G DI+ A++G GKT F L I+Q+L + + +E + +
Sbjct: 86 IPAAI-TGTDILCQAKSGMGKTAVFVLSILQQLDTNENQDMQDTKEMNNDNNNNGDNKFV 144
Query: 125 RALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKAR--PELVVGTP 181
R L + TRELA Q+ + +K + NVR + GG+S K +L K P +++GTP
Sbjct: 145 RCLGLAHTRELAYQIKNEFDRFSKYLKNVRCEVVYGGISMNKHIKLFKEDNIPHIIIGTP 204
Query: 182 GRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLPM 230
GR+ L+ EK+L+ + FVLDE D+ +E R ++Q I P+
Sbjct: 205 GRILALIR--EKYLIT-DKIQHFVLDECDKCLEKLDMRSDVQKIFISTPL 251
Score = 40 (19.1 bits), Expect = 9.9e-23, Sum P(2) = 9.9e-23
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 255 KRQTLVFSATIALSA-DFRKKLKHGSLKL------KQSVNGL-NSIETLSERAGMRANVA 306
K+Q + FSAT+A D KK +++ K ++GL L E+ R +
Sbjct: 252 KKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQEKDKTRKLIE 311
Query: 307 IVD 309
I+D
Sbjct: 312 ILD 314
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 250 (93.1 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 64/191 (33%), Positives = 103/191 (53%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
A+ E L K+I + G+ + TP+QK IP G+D++ A+TGSGKT AF LPI+
Sbjct: 168 AFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVI-QAGRDLMSCAQTGSGKTAAFLLPIV 226
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
R++++ A +K +E + +I+ PTREL Q+ ++ G +R
Sbjct: 227 DRMMKDGVTASAF--QKQQEPQ---------CIIVAPTRELINQIFLEARKFVYGTCIRP 275
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V I GG T R + ++ TPGRL +++ G+ LVE+ + VLDEADRM++
Sbjct: 276 VVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEV---KYLVLDEADRMLD 332
Query: 215 NGHFRELQSII 225
G +++ +I
Sbjct: 333 MGFGLDMKKLI 343
Score = 42 (19.8 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 253 RKKRQTLVFSAT 264
+ +RQTL+FSAT
Sbjct: 351 KDRRQTLMFSAT 362
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 272 (100.8 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 67/214 (31%), Positives = 119/214 (55%)
Query: 18 DAEEELVSEA---EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKD 74
D EE+ EA ++ +++L LH + ++I G+ PTP+QK IPA G+D
Sbjct: 212 DKYEEIPVEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPAL-QGGRD 270
Query: 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKA-GKMLEEKGEEAEKYAPKGHLRALIITPTR 133
++ A+TGSGKT AF +P++ +L++ A + + G ++Y P AL+++PTR
Sbjct: 271 LMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQY-PS----ALVLSPTR 325
Query: 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE-RLLKARPELVVGTPGRLWELMSGGE 192
EL+LQ+ + ++ A + + GG K + L+ +++ TPGRL ++M G
Sbjct: 326 ELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQG- 384
Query: 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIID 226
L+ + + VLDEADRM++ G +++ I++
Sbjct: 385 --LIGMEGCRYLVLDEADRMLDMGFEPQIRQIVE 416
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 181 (68.8 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 50/179 (27%), Positives = 89/179 (49%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
L AL++TPTRELA Q+++ + + I V+ IVGG+ + Q L +P +V+ TPGR
Sbjct: 95 LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGR 154
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
L + + + L L + V+DEADR++ E+ I+ ++P + + T+
Sbjct: 155 LIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 212
Query: 244 TCVTVSSLQRKKRQTLVFSATIALSADFR--KKLKHGSLKLKQSVNGLNSIETLSERAG 300
+Q+ +R L A+S+ ++ +KL+ L + + L+E AG
Sbjct: 213 ------KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG 265
Score = 147 (56.8 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 34/72 (47%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E + +L + +L ++ +LG+ +PT IQ IP A QG+DIIG AETGSGKT AF L
Sbjct: 24 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGRDIIGLAETGSGKTGAFAL 82
Query: 92 PIMQRLLEEREK 103
PI+ LLE ++
Sbjct: 83 PILNALLETPQR 94
>ASPGD|ASPL0000054998 [details] [associations]
symbol:AN0894 species:162425 "Emericella nidulans"
[GO:0000373 "Group II intron splicing" evidence=IEA] [GO:0034337
"RNA folding" evidence=IEA] [GO:0000372 "Group I intron splicing"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0005759 "mitochondrial matrix" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EnsemblFungi:CADANIAT00001763
HOGENOM:HOG000204197 OMA:DDEVPTH Uniprot:C8VUS9
Length = 641
Score = 249 (92.7 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 72/232 (31%), Positives = 121/232 (52%)
Query: 1 MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPL-LMKSIYR-LGFKEPT 58
+FH+ N + + VS E+ T F E + P L++++ + + + T
Sbjct: 47 LFHSGQFRFSAQVNAVAENSSQNVSVEELPTRFAELGERNILPRNLVENLTKHMKLETMT 106
Query: 59 PIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 118
+Q+ I + +G D++ A+TG+GKT+AF +P++++LL +R +L+ K
Sbjct: 107 EVQRRTILESV-KGGDMLAQAKTGTGKTVAFLIPVVEKLLGDRS----LLKTSYRNGRKI 161
Query: 119 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG-MSTEKQERLLKARPELV 177
AP +RA++I+PTRELA Q+ K + ++V VGG M +L + ++
Sbjct: 162 APID-IRAIVISPTRELAEQIAVEAKRLVARTGLQVQVAVGGTMKRAALHQLQREGCHIL 220
Query: 178 VGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
V TPGRL +L++ V L+ FVLDEADR+++ G EL I LP
Sbjct: 221 VATPGRLKDLLTDPTSG-VRAPKLNTFVLDEADRLLDEGFAPELMEIQHRLP 271
Score = 46 (21.3 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 256 RQTLVFSATIA 266
RQTL+FSAT+A
Sbjct: 278 RQTLMFSATVA 288
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 183 (69.5 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 43/111 (38%), Positives = 68/111 (61%)
Query: 121 KGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVG 179
K +++++I PTRELA QV L+++A+GI N++++ + GG Q L+ ++VG
Sbjct: 76 KFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLEHGAHVIVG 135
Query: 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230
TPGRL E + G ++L L+ VLDEADRM+E G L +I+ P+
Sbjct: 136 TPGRLEEHVIKGT---LQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL 183
Score = 140 (54.3 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
A++ L L L+K++ LG+++ TPIQ +P +GKD+IG A+TGSGKT AFGL ++
Sbjct: 11 AFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELL-KGKDVIGEAKTGSGKTAAFGLALL 69
Query: 95 QRL 97
+L
Sbjct: 70 NKL 72
Score = 39 (18.8 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 256 RQTLVFSAT 264
RQTL+FSAT
Sbjct: 185 RQTLLFSAT 193
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 183 (69.5 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 43/111 (38%), Positives = 68/111 (61%)
Query: 121 KGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVG 179
K +++++I PTRELA QV L+++A+GI N++++ + GG Q L+ ++VG
Sbjct: 76 KFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLEHGAHVIVG 135
Query: 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230
TPGRL E + G ++L L+ VLDEADRM+E G L +I+ P+
Sbjct: 136 TPGRLEEHVIKGT---LQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL 183
Score = 140 (54.3 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
A++ L L L+K++ LG+++ TPIQ +P +GKD+IG A+TGSGKT AFGL ++
Sbjct: 11 AFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELL-KGKDVIGEAKTGSGKTAAFGLALL 69
Query: 95 QRL 97
+L
Sbjct: 70 NKL 72
Score = 39 (18.8 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 256 RQTLVFSAT 264
RQTL+FSAT
Sbjct: 185 RQTLLFSAT 193
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 245 (91.3 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 70/208 (33%), Positives = 110/208 (52%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
LV I ++ E++ +++ + + G ++PTPIQ IP G+D+IG A TG
Sbjct: 166 LVEGEGIPPPIKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTIL-SGRDMIGIAFTG 224
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142
SGKTL F LP++ LE+ EK + +G P G LII P+RELA Q
Sbjct: 225 SGKTLVFTLPVIMFCLEQ-EKRLPFSKREG-------PYG----LIICPSRELARQTHGI 272
Query: 143 LKEVAKGINVRVVP------IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
++ + + +P +GGMS ++Q +K ++V TPGRL +L+ +K +V
Sbjct: 273 IEYYCRLLQEDSLPPLRCALCIGGMSVKEQMETIKHGVHMMVATPGRLMDLL---QKKMV 329
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSI 224
L + LDEADRMI+ G ++++I
Sbjct: 330 SLDICRYLALDEADRMIDMGFEGDIRTI 357
Score = 49 (22.3 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 247 TVSSLQRKKRQTLVFSATIALSA-DFRKKLKHGSLKLKQSVNGLNSIETLSE 297
T+ S + +RQTL+FSAT+ +F K + + G S++ + E
Sbjct: 356 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQE 407
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 270 (100.1 bits), Expect = 1.2e-22, P = 1.2e-22
Identities = 74/215 (34%), Positives = 113/215 (52%)
Query: 36 WNEL--RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
W L +LH +++++ LGF TP+Q ACIP KD+ A TGSGKTLAF +P
Sbjct: 9 WGSLPVKLHDNILQTLKELGFTYMTPVQSACIPLFM-SNKDVAAEAVTGSGKTLAFVIPA 67
Query: 94 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 152
++ LL+ EK KM + G ALIITPTRELA+Q+++ + +G
Sbjct: 68 LEILLKREEKLKKM--QVG-------------ALIITPTRELAMQISEVMGRFLQGFPQF 112
Query: 153 RVVPIVGGMST-EKQERLLKARPELVVGTPGRLWELM---SGGEKHLVELHTLSFFVLDE 208
+ ++GG + E E+L +++ TPGRL ++ + G + +L VLDE
Sbjct: 113 TQILLIGGSNPIEDVEKLKTQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDE 172
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
ADR+++ G L +I+ LP + + QTQ
Sbjct: 173 ADRLLDMGFEASLNTILGYLPKQRRTGLFSATQTQ 207
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 249 (92.7 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 67/180 (37%), Positives = 101/180 (56%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
LM I + + +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAL-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL- 321
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
E G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 322 -----EPGD--------GPI-AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
+Q + L+ E+VV TPGRL + + +K L +S+ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 51 (23.0 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRKKLK 276
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 249 (92.7 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 67/180 (37%), Positives = 101/180 (56%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
LM I + + +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAL-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL- 321
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
E G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 322 -----EPGD--------GPI-AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
+Q + L+ E+VV TPGRL + + +K L +S+ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 51 (23.0 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRKKLK 276
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 249 (92.7 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 67/180 (37%), Positives = 101/180 (56%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
LM I + + +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAL-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL- 321
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
E G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 322 -----EPGD--------GPI-AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
+Q + L+ E+VV TPGRL + + +K L +S+ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 51 (23.0 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRKKLK 276
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 249 (92.7 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 67/180 (37%), Positives = 101/180 (56%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
LM I + + +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAL-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL- 321
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
E G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 322 -----EPGD--------GPI-AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
+Q + L+ E+VV TPGRL + + +K L +S+ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 51 (23.0 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRKKLK 276
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 249 (92.7 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 67/180 (37%), Positives = 101/180 (56%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
LM I + + +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAL-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL- 321
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
E G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 322 -----EPGD--------GPI-AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
+Q + L+ E+VV TPGRL + + +K L +S+ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 51 (23.0 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRKKLK 276
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 250 (93.1 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 64/191 (33%), Positives = 103/191 (53%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
A+ E L K+I + G+ + TP+QK IP G+D++ A+TGSGKT AF LPI+
Sbjct: 168 AFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVI-QAGRDLMSCAQTGSGKTAAFLLPIV 226
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
R++++ A +K +E + +I+ PTREL Q+ ++ G +R
Sbjct: 227 DRMMKDGVTASAF--QKQQEPQ---------CIIVAPTRELINQIFLEARKFVYGTCIRP 275
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V I GG T R + ++ TPGRL +++ G+ LVE+ + VLDEADRM++
Sbjct: 276 VVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEV---KYLVLDEADRMLD 332
Query: 215 NGHFRELQSII 225
G +++ +I
Sbjct: 333 MGFGLDMKKLI 343
Score = 42 (19.8 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 253 RKKRQTLVFSAT 264
+ +RQTL+FSAT
Sbjct: 351 KDRRQTLMFSAT 362
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 249 (92.7 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 67/180 (37%), Positives = 101/180 (56%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
LM I + + +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAL-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL- 321
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
E G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 322 -----EPGD--------GPI-AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
+Q + L+ E+VV TPGRL + + +K L +S+ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 51 (23.0 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRKKLK 276
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
>TAIR|locus:2159527 [details] [associations]
symbol:STRS2 "STRESS RESPONSE SUPPRESSOR 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP] [GO:0009414 "response
to water deprivation" evidence=IMP] [GO:0009651 "response to salt
stress" evidence=IMP] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009651 GO:GO:0009409 GO:GO:0009414 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010473 EMBL:AY035114
EMBL:AY142638 IPI:IPI00534387 PIR:T51348 RefSeq:NP_196479.1
UniGene:At.47465 ProteinModelPortal:Q94C75 SMR:Q94C75 STRING:Q94C75
PRIDE:Q94C75 EnsemblPlants:AT5G08620.1 GeneID:830763
KEGG:ath:AT5G08620 GeneFarm:945 TAIR:At5g08620 InParanoid:Q94C75
OMA:RELACQA PhylomeDB:Q94C75 ProtClustDB:CLSN2687472
Genevestigator:Q94C75 GermOnline:AT5G08620 Uniprot:Q94C75
Length = 563
Score = 243 (90.6 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 72/210 (34%), Positives = 112/210 (53%)
Query: 25 SEAEIS-TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
S++ +S T FD + L PL +K I GFK T +Q+A +P QGKDI+ A+TG+
Sbjct: 73 SDSYLSKTRFD---QFPLSPLTLKGIEDAGFKTMTVVQEATLPLIL-QGKDILAKAKTGT 128
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKT+AF LP ++ ++ KA + ++ P + L++ PTRELA Q
Sbjct: 129 GKTVAFLLPSIEAVI----KAPPASRDN-----RHPP---IIVLVVCPTRELACQAAAEA 176
Query: 144 KEVAK---GINVRVVPIVGGMSTEKQERLLKARP-ELVVGTPGRLWELMSGGEKHLVELH 199
+ K I V+VV +GG ++R L+ P +++V TPGRL + + L
Sbjct: 177 NILLKYHPSIGVQVV--IGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLM 234
Query: 200 TLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+ VLDEAD +++ G RE++ II +P
Sbjct: 235 GVKVLVLDEADHLLDMGFRREIERIIAAVP 264
Score = 49 (22.3 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 254 KKRQTLVFSATIALSADFRKKLKHGSLK 281
K+RQT +FSAT++ D +++ H +LK
Sbjct: 265 KQRQTFLFSATVS---DEVRQICHVALK 289
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 249 (92.7 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 67/205 (32%), Positives = 109/205 (53%)
Query: 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
E V +I ++ ++ +++ + + GF EPTPIQ P A +G+D+IG AE
Sbjct: 86 EITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAM-KGRDLIGIAE 144
Query: 81 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVT 140
TGSGKTL++ LP + + A ML G+ G + L++ PTRELA+Q+
Sbjct: 145 TGSGKTLSYLLPAIVHV-----NAQPMLAH-GD--------GPI-VLVLAPTRELAVQIQ 189
Query: 141 DHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 200
+ ++ I GG+ Q R L+ E+V+ TPGRL ++M E + L
Sbjct: 190 QEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMM---ESNNTNLRR 246
Query: 201 LSFFVLDEADRMIENGHFRELQSII 225
+++ VLDEADRM++ G +++ I+
Sbjct: 247 VTYLVLDEADRMLDMGFDPQIRKIV 271
Score = 40 (19.1 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 23/68 (33%), Positives = 31/68 (45%)
Query: 253 RKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTN 312
R RQTL +SAT + K+++ L K N I S+ RA IVD+ +
Sbjct: 275 RPDRQTLYWSAT------WPKEVEQ--LSKKFLYNPYKVIIGSSDLKANRAIRQIVDVIS 326
Query: 313 VSVLANKL 320
S NKL
Sbjct: 327 ESQKYNKL 334
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 248 (92.4 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 66/180 (36%), Positives = 101/180 (56%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
LM I + + +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAM-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL- 321
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
E G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 322 -----EPGD--------GPI-AVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMW 367
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
+Q + L+ E+VV TPGRL + + +K L +++ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSI 424
Score = 51 (23.0 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRKKLK 276
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 248 (92.4 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 66/180 (36%), Positives = 101/180 (56%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
LM I + + +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 266 LMHQIRKSEYTQPTPIQCQGVPVAM-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL- 323
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
E G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 324 -----EPGD--------GPI-AVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMW 369
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
+Q + L+ E+VV TPGRL + + +K L +++ V DEADRM + G +++SI
Sbjct: 370 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSI 426
Score = 51 (23.0 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRKKLK 276
+++S R RQTL+FSAT FRKK++
Sbjct: 425 SIASHVRPDRQTLLFSAT------FRKKIE 448
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 268 (99.4 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 61/183 (33%), Positives = 102/183 (55%)
Query: 46 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 105
+K+ F++PTP+Q P A G D++G ++TGSGKTL+F LP ++ +L
Sbjct: 151 IKNFLSKKFEKPTPVQSLGWPIAL-SGSDMLGISKTGSGKTLSFILPAIEHIL------- 202
Query: 106 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEK 165
+ + Y P + L++ PTRELA Q+ ++ + +N+ + I GG
Sbjct: 203 ------AQPRQSYYPGPSV--LVVAPTRELANQINQEAEQYLRLVNIEIATIYGGAPRRS 254
Query: 166 QERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 225
Q+ L RP++VVGTPGR+ + M G+ + L +SF V+DEADR++E G +++ I
Sbjct: 255 QQLQLSRRPKIVVGTPGRIIDFMESGD---LSLKNISFLVVDEADRLMEMGFEQQIDGIF 311
Query: 226 DML 228
+ +
Sbjct: 312 NSI 314
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 172 (65.6 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 50/204 (24%), Positives = 103/204 (50%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
R+L++ PTRELA QV ++ K + + ++GG+S ++Q+ L+ ++++ TPGRL
Sbjct: 75 RSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDVLIATPGRL 134
Query: 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGS---NEGQSEQ 241
+ G+ L + + V+DEADRM++ G +++ I + P T + + + +
Sbjct: 135 LDHFERGKLLLTGVQIM---VVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSATMAPE 191
Query: 242 TQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGM 301
+ +T + L R + AT + + + L GS + +++ + L + G
Sbjct: 192 IER-ITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRALIDAEGE 250
Query: 302 RANVAIVDL---TNVSVLANKLEE 322
+ AI+ T+V ++A L++
Sbjct: 251 KCTNAIIFCNRKTDVDIVAKSLQK 274
Score = 156 (60.0 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 30/69 (43%), Positives = 48/69 (69%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L+P ++K+I G++ PTPIQ IP A +G+D++G A+TG+GKT +F LP++
Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPAL-EGRDVLGIAQTGTGKTASFTLPMIT 62
Query: 96 RLLEEREKA 104
L R +A
Sbjct: 63 LLARGRARA 71
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 260 (96.6 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 63/207 (30%), Positives = 110/207 (53%)
Query: 20 EEEL-VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
E EL V ++ W++ L ++ ++ +L +++P PIQ +P G+D IG
Sbjct: 381 ELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIM-SGRDCIGV 439
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 138
A+TGSGKTL F LP+++ + ++ E G+ P G L++ PTREL Q
Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQPPV------EAGD-----GPIG----LVMAPTRELVQQ 484
Query: 139 VTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
+ +++ +K + + VP+ GG +Q LK E+VV TPGR+ +++ + L
Sbjct: 485 IYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNL 544
Query: 199 HTLSFFVLDEADRMIENGHFRELQSII 225
+++ V+DEADRM + G ++ I+
Sbjct: 545 RRVTYLVMDEADRMFDMGFEPQITRIV 571
Score = 39 (18.8 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 253 RKKRQTLVFSAT 264
R RQT++FSAT
Sbjct: 575 RPDRQTVLFSAT 586
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 167 (63.8 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 39/113 (34%), Positives = 65/113 (57%)
Query: 120 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVG 179
P G + L++TPTRELA Q+ + + + K + ++ IVGGM Q L +P +V+
Sbjct: 68 PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIA 126
Query: 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG--HFR-ELQSIIDMLP 229
TPGRL + + + + + F V+DEADR++E G F +L++I+ +P
Sbjct: 127 TPGRLADHLRSS--NTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVP 177
Score = 162 (62.1 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
E+ L L++ +LG K+PTP+Q CIPA +G+D +G A+TGSGKT AF LPI+Q+L
Sbjct: 6 EIGLSSWLVEQCRQLGLKQPTPVQLGCIPAIL-EGRDCLGCAKTGSGKTAAFVLPILQKL 64
Query: 98 LEE 100
E+
Sbjct: 65 SED 67
Score = 49 (22.3 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 236 EGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+G ++ T T+ + +RQTL+FSAT+
Sbjct: 160 QGCTDFTTDLETILAAVPARRQTLLFSATL 189
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 247 (92.0 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 68/180 (37%), Positives = 99/180 (55%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
LM I + + +PTPIQ +P A G+D IG A+TGSGKT AF PI+ +++++E
Sbjct: 268 LMHQIRKSEYTQPTPIQCQGVPIAL-SGRDAIGIAKTGSGKTAAFIWPILVHIMDQKEL- 325
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
E GE G + A+I+ PTREL Q+ K K +R V + GG S
Sbjct: 326 -----EPGE--------GPI-AVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMW 371
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
+Q + L+ E+VV TPGRL + + +K L ++F V DEADRM + G +++SI
Sbjct: 372 EQAKALQEGAEIVVCTPGRLIDHV---KKKATSLQRVTFLVFDEADRMFDMGFEYQVRSI 428
Score = 51 (23.0 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRKKLK 276
+++S R RQTL+FSAT FRKK++
Sbjct: 427 SIASHVRPDRQTLLFSAT------FRKKIE 450
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 269 (99.8 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 65/197 (32%), Positives = 114/197 (57%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++++ + ++M +I + PTP+QK IP + +D++ A+TGSGKT AF LPI+
Sbjct: 181 FSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPILS 239
Query: 96 RLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
++ + +A K ++E G + K + +L++ PTRELA+Q+ + ++ + VR
Sbjct: 240 QIYTDGPGEALKAMKENGRYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRVRP 296
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG T +Q R L+ L+V TPGRL ++M G+ + L + VLDEADRM++
Sbjct: 297 CVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRMLD 353
Query: 215 NGHFRELQSII--DMLP 229
G +++ I+ D +P
Sbjct: 354 MGFEPQIRRIVEQDTMP 370
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 255 (94.8 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 70/201 (34%), Positives = 106/201 (52%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
VS ++ W+ L ++ I +L + +PT IQ +P G+D++G A+TGS
Sbjct: 368 VSGKDVPKPVQKWSLCGLTRPILDVIAKLEYDKPTAIQMQALPVIM-SGRDVVGVAKTGS 426
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKT+AF LP M R ++++E K E P G LI+TPTRELA+Q+
Sbjct: 427 GKTMAFLLP-MFRHIKDQEPV------KDNEG----PIG----LILTPTRELAVQIFRDC 471
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
K K + +R V GG + Q LK E+VV T GR+ +L++ + +V L ++
Sbjct: 472 KPFLKTLGLRAVCAYGGPPIKDQIADLKRGAEIVVATTGRMIDLLAANQGRVVSLRRTTY 531
Query: 204 FVLDEADRMIENGHFRELQSI 224
VLDEADRM + G ++ I
Sbjct: 532 IVLDEADRMFDMGFEPQVMKI 552
Score = 44 (20.5 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 253 RKKRQTLVFSATIA--LSADFRKKLKH 277
R RQT++FSAT+ + A +K LK+
Sbjct: 557 RPDRQTVLFSATMPKIMDALVKKVLKN 583
Score = 44 (20.5 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 239 SEQTQTC-VTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLS- 296
+E+ + C + ++ + Q V I + FR+K+K G K QS G +E L
Sbjct: 733 TEEQENCAIGIAKALEQSGQP-VPEKLIEMRKAFREKVKAGKAK-DQSGFGGKGLEKLDK 790
Query: 297 ERAGMR 302
ER R
Sbjct: 791 EREAAR 796
>SGD|S000002651 [details] [associations]
symbol:PRP28 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005681 "spliceosomal
complex" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0000354 "cis
assembly of pre-catalytic spliceosome" evidence=TAS] [GO:0005682
"U5 snRNP" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002651 GO:GO:0005524
GO:GO:0005737 EMBL:BK006938 GO:GO:0005681 GO:GO:0005682
GO:GO:0003676 EMBL:Z49701 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
RefSeq:NP_010529.3 GeneID:851830 KEGG:sce:YDR243C KO:K12858
HOGENOM:HOG000268796 OrthoDB:EOG4KPXK0 EMBL:X56934 PIR:A39624
RefSeq:NP_878065.3 ProteinModelPortal:P23394 SMR:P23394
DIP:DIP-6324N IntAct:P23394 MINT:MINT-599541 STRING:P23394
PaxDb:P23394 PeptideAtlas:P23394 EnsemblFungi:YDR243C
GeneID:1466436 KEGG:sce:YDR246W-A CYGD:YDR243c OMA:HEMNERD
NextBio:969715 Genevestigator:P23394 GermOnline:YDR243C
Uniprot:P23394
Length = 588
Score = 248 (92.4 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 72/200 (36%), Positives = 105/200 (52%)
Query: 36 WNELRLHP--LLMKSIYRLGFKEPTPIQKACIPAAAH--QGKDIIGAAETGSGKTLAFGL 91
W EL + P LL I L F PTPIQ+ IP + Q +D +G A TGSGKTLAF +
Sbjct: 174 WEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVI 233
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK--- 148
PI+ ++ + + G PK ALI+ PTREL Q+ ++V K
Sbjct: 234 PILIKMSRSPPRPPSLKIIDG-------PK----ALILAPTRELVQQIQKETQKVTKIWS 282
Query: 149 ---GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
+ +V+ IVGG S E+ L +++V TPGRL + + E HL+ + + V
Sbjct: 283 KESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSL---ENHLLVMKQVETLV 339
Query: 206 LDEADRMIENGHFRELQSII 225
LDEAD+MI+ G ++ +I+
Sbjct: 340 LDEADKMIDLGFEDQVTNIL 359
Score = 43 (20.2 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 236 EGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
E Q T V +++ RQTL+F+AT+
Sbjct: 352 EDQVTNILTKVDINADSAVNRQTLMFTATM 381
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 266 (98.7 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 67/180 (37%), Positives = 100/180 (55%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
L P L+ ++ G+ PTPIQ IPAA GK ++ +A+TGSGKT +F +PI+ R
Sbjct: 117 LPPKLLLNLETAGYDFPTPIQMQAIPAAL-TGKSLLASADTGSGKTASFLVPIISRCTTY 175
Query: 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG 160
E ++ P A+++ PTREL +QV D K + KG+ + +VGG
Sbjct: 176 HS------EHPSDQRRN--PL----AMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGG 223
Query: 161 MSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 220
Q ++ EL++GTPGR+ +L+S KH +EL + FVLDE D M++ G FR+
Sbjct: 224 DPMSGQLYRIQQGVELIIGTPGRVVDLLS---KHTIELDNIMTFVLDEVDCMLQRG-FRD 279
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 172 (65.6 bits), Expect = 2.4e-22, Sum P(3) = 2.4e-22
Identities = 40/89 (44%), Positives = 59/89 (66%)
Query: 20 EEELVSEAEISTEFD---AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
++E S E ++E+D ++ ++ L L+K+I LGFK+PTPIQKACIP GKDI
Sbjct: 163 QKEAESFFEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGL-LGKDIC 221
Query: 77 GAAETGS-GKTLAFGLPIMQRLLEEREKA 104
A TG+ GKT AF LP+++RL+ + +A
Sbjct: 222 ACAATGTVGKTAAFILPVLERLIYKPRQA 250
Score = 160 (61.4 bits), Expect = 2.4e-22, Sum P(3) = 2.4e-22
Identities = 37/102 (36%), Positives = 61/102 (59%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
R L++ PTREL +QV K++A+ +V VGG+ + QE L++ P++++ TPGRL
Sbjct: 254 RVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSGPDILIATPGRL 313
Query: 185 WE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 225
+ L + HL + L +LDEADRM++ +++ II
Sbjct: 314 IDHLHNCPSFHLSSVEVL---ILDEADRMLDEYFEEQMKEII 352
Score = 40 (19.1 bits), Expect = 2.4e-22, Sum P(3) = 2.4e-22
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 240 EQTQTCVTVSSLQRKKRQTLVFSATI 265
EQ + + + S + RQT++FSAT+
Sbjct: 346 EQMKEIIRLCS---RHRQTMLFSATM 368
Score = 39 (18.8 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 94 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134
MQ+ + KA K LEE +EA A KG R+ TRE
Sbjct: 586 MQQSEAQINKAKKQLEEGKQEA---ATKGVERSWF--QTRE 621
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 246 (91.7 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 67/180 (37%), Positives = 101/180 (56%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
LM I + + +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAL-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL- 321
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
E G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 322 -----EPGD--------GPI-AVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMW 367
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
+Q + L+ E+VV TPGRL + + +K L +S+ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 51 (23.0 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRKKLK 276
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 242 (90.2 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 71/208 (34%), Positives = 109/208 (52%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
LV I ++ E++L +++ + + G PTPIQ IP G+D+IG A TG
Sbjct: 170 LVEGDGIPPPIKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTIL-SGRDMIGIAFTG 228
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142
SGKTL F LP++ LE+ EK + +G P G LII P+RELA Q
Sbjct: 229 SGKTLVFTLPVIMFCLEQ-EKRLPFSKREG-------PYG----LIICPSRELARQTHGI 276
Query: 143 LKEVAKGINVRVVPI------VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
L+ + + P+ +GGMS ++Q ++ ++V TPGRL +L+ +K +V
Sbjct: 277 LEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLL---QKKMV 333
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSI 224
L + LDEADRMI+ G ++++I
Sbjct: 334 SLDICRYLALDEADRMIDMGFEGDIRTI 361
Score = 49 (22.3 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 247 TVSSLQRKKRQTLVFSATIALSA-DFRKKLKHGSLKLKQSVNGLNSIETLSE 297
T+ S + +RQTL+FSAT+ +F K + + G S++ + E
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQE 411
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 189 (71.6 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 36/107 (33%), Positives = 66/107 (61%)
Query: 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPG 182
H++AL++ PTRELA Q+ + + + +NV ++P +GG S +R L+A +VVGTPG
Sbjct: 97 HVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPG 156
Query: 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
R+ ++++ ++ ++ + FVLDEAD M+ G ++ + +P
Sbjct: 157 RVGDMIN---RNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMP 200
Score = 130 (50.8 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQK-ACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
++++++ L L++ IY GF++P+ IQK A +P GKD+I A++G+GKT F +
Sbjct: 29 ESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTT--GKDVIAQAQSGTGKTATFSVS 86
Query: 93 IMQRLLEE 100
I+QR+ E
Sbjct: 87 ILQRIDHE 94
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 248 (92.4 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 68/184 (36%), Positives = 105/184 (57%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
++++I +LGF EPTPIQ P A +G+D+IG AETGSGKTLA+ LP + + A
Sbjct: 176 ILEAIAKLGFTEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPALVHV-----SA 229
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
L G++ G + LI+ PTRELA+Q+ + ++ VR I GG
Sbjct: 230 QPRL---GQD------DGPI-VLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKG 279
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
Q R L+ E+V+ TPGRL +++ +H L +++ VLDEADRM++ G +++ I
Sbjct: 280 PQIRDLRRGVEIVIATPGRLIDMLEC--QH-TNLKRVTYLVLDEADRMLDMGFEPQIRKI 336
Query: 225 IDML 228
+ +
Sbjct: 337 VSQI 340
Score = 40 (19.1 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 248 VSSLQRKKRQTLVFSATI-----ALSADFRK---KLKHGS--LKLKQSVNGLNSIETLSE 297
VS + R RQTL++SAT L+ F + K GS LK QS+N + I E
Sbjct: 337 VSQI-RPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPE 395
Query: 298 R 298
+
Sbjct: 396 K 396
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 175 (66.7 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 43/140 (30%), Positives = 72/140 (51%)
Query: 118 YAPKGH--LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPE 175
Y PKG R L++ PTRELA+QV ++++ I + V GG+ + QE L++ P+
Sbjct: 212 YRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPD 271
Query: 176 LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSN 235
+VV TPGRL + + L + VLDEADRM+E ++ +I + +
Sbjct: 272 VVVATPGRLIDHLHNSPSF--NLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTL 329
Query: 236 EGQSEQTQTCVTVSSLQRKK 255
+ T+ ++S+ +K
Sbjct: 330 LFSATMTEEIDELASMSLQK 349
Score = 155 (59.6 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 17 DDAEEELVSEAEISTEFD-AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
+D L+ + T + ++ ++ L ++K+ G+ +PTPIQ+ACIP A GKDI
Sbjct: 130 EDFFSALIDGKSLDTSVNVSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVAL-TGKDI 188
Query: 76 IGAAETGSGKTLAFGLPIMQRLL 98
A TG+GKT AF LPI++R++
Sbjct: 189 CACAATGTGKTAAFVLPILERMI 211
Score = 43 (20.2 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 254 KKRQTLVFSATIALSAD 270
+ RQTL+FSAT+ D
Sbjct: 324 QNRQTLLFSATMTEEID 340
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 266 (98.7 bits), Expect = 5.0e-22, P = 5.0e-22
Identities = 68/208 (32%), Positives = 115/208 (55%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
++++++ + ++M +I + PTP+QK IP + +D++ A+TGSGKT AF LP+
Sbjct: 223 ESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTK-RDLMACAQTGSGKTAAFLLPV 281
Query: 94 MQRLLEEREKAGKMLEEKGEEAE--KYAP-KGHLRALIITPTRELALQVTDHLKEVAKGI 150
+ ++ E + + E KY K + +L++ PTRELALQ+ D ++ A
Sbjct: 282 LSQIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRS 341
Query: 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210
VR + GG +Q R L+ L+V TPGRL ++M G+ + L + VLDEAD
Sbjct: 342 RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDYCKYLVLDEAD 398
Query: 211 RMIENGHFRELQSII--DMLPMTNGSNE 236
RM++ G +++ I+ D +P GS +
Sbjct: 399 RMLDMGFEPQIRRIVEQDTMP-PKGSRQ 425
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 179 (68.1 bits), Expect = 5.6e-22, Sum P(3) = 5.6e-22
Identities = 41/106 (38%), Positives = 63/106 (59%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
+RA+I++PTRELA+Q +K+ ++G +R + IVGG S E Q L P++++ TPGR
Sbjct: 301 VRAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARNPDIIIATPGR 360
Query: 184 LWE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 228
L L+ G + L + + V DEADR+ E G +L I+ L
Sbjct: 361 LMHHLLETG----MSLSKVQYIVFDEADRLFEMGFNEQLTEILSKL 402
Score = 146 (56.5 bits), Expect = 5.6e-22, Sum P(3) = 5.6e-22
Identities = 35/89 (39%), Positives = 51/89 (57%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
++ EEE S+ + T + + L L+K+I + GF PTPIQ+ IP G DI+
Sbjct: 215 NEQEEETTSKKKKKT--GGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMIL-DGHDIV 271
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAG 105
G A TGSGKT AF +P++Q+L + G
Sbjct: 272 GMARTGSGKTGAFVIPMIQKLGDHSTTVG 300
Score = 48 (22.0 bits), Expect = 5.6e-22, Sum P(3) = 5.6e-22
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 254 KKRQTLVFSATI-ALSADF 271
+ RQTL+FSAT+ +L DF
Sbjct: 404 ENRQTLLFSATLPSLLVDF 422
Score = 46 (21.3 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 33/141 (23%), Positives = 61/141 (43%)
Query: 129 ITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKAR-PELVVG--TPG-RL 184
++ + + D L E+ G N ++ I+ +S +Q L A P L+V G
Sbjct: 372 LSKVQYIVFDEADRLFEM--GFNEQLTEILSKLSENRQTLLFSATLPSLLVDFVRAGLNN 429
Query: 185 WELMS-GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
+L++ + + E +LSFF L +++ L+ II P + + T
Sbjct: 430 PKLINLDTDTKISENLSLSFFTLRHEEKL--GVLLFLLKDIIYKKPQLPTTET--TTTTT 485
Query: 244 TCVTVSSLQRKKRQTLVFSAT 264
T + Q+KK T++F +T
Sbjct: 486 TNNESNQQQQKKSSTIIFVST 506
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 244 (91.0 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
Identities = 58/158 (36%), Positives = 94/158 (59%)
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131
GKD++ AA+TG+GKT F LP+++ L KG +A+ G RAL++TP
Sbjct: 38 GKDVMAAAQTGTGKTAGFTLPLLELLA------------KGHKAKS----GQTRALVLTP 81
Query: 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191
TRELA QV + ++ K + +R + GG+ Q L+ +++V TPGRL +L+
Sbjct: 82 TRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVDVLVATPGRLLDLV--- 138
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+++ V+ + L VLDEADRM++ G R+++ I+ +LP
Sbjct: 139 QQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLP 176
Score = 131 (51.2 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L L K++ G+ P+PIQ IPA GKD++ AA+TG+GKT F LP++
Sbjct: 2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVL-TGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 95 QRLLE-EREKAGK 106
+ L + + K+G+
Sbjct: 61 ELLAKGHKAKSGQ 73
Score = 44 (20.5 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 113 EEAEKYAPKGHLR------ALIITPTRELALQVT--DHLKEVAKG-----INVRVVPIVG 159
+EA++ G +R AL+ + L T D ++E+AKG + + V P
Sbjct: 154 DEADRMLDMGFIRDIKKILALLPAKRQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNA 213
Query: 160 GMSTEKQ 166
+T KQ
Sbjct: 214 AATTVKQ 220
Score = 41 (19.5 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 248 VSSLQRKKRQTLVFSATIA 266
+ +L KRQ L+FSAT +
Sbjct: 171 ILALLPAKRQNLMFSATFS 189
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 179 (68.1 bits), Expect = 5.9e-22, Sum P(3) = 5.9e-22
Identities = 44/107 (41%), Positives = 66/107 (61%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPG 182
++AL++ PTRELA QV ++ + + I N++V+ + GGM Q L+ ++VGTPG
Sbjct: 73 VQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPG 132
Query: 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
R+ + +S L EL+TL VLDEADRM+E G L++II P
Sbjct: 133 RILDHLSKDRIDLSELNTL---VLDEADRMLEMGFQEALEAIIAAAP 176
Score = 131 (51.2 bits), Expect = 5.9e-22, Sum P(3) = 5.9e-22
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 39 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLL 98
L L P L+ ++ +GF TPIQ +PA +G+D+IG +TGSGKT AFGL ++ L
Sbjct: 9 LNLKPELLANLETMGFATMTPIQAQSLPAIL-KGQDVIGQGKTGSGKTAAFGLGVLSNLN 67
Query: 99 EER 101
+R
Sbjct: 68 VKR 70
Score = 46 (21.3 bits), Expect = 5.9e-22, Sum P(3) = 5.9e-22
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 255 KRQTLVFSATIALSAD-FRKKLKHGSLKLK-QSVNGLNSI 292
+RQTL+FSAT S + + + +L +K ++ + +SI
Sbjct: 178 ERQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSSI 217
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 264 (98.0 bits), Expect = 7.2e-22, P = 7.2e-22
Identities = 64/199 (32%), Positives = 115/199 (57%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
++++++ + ++M +I + PTP+QK IP + +D++ A+TGSGKT AF LPI
Sbjct: 181 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPI 239
Query: 94 MQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+ ++ + +A K ++E G + K + +L++ PTRELA+Q+ + ++ + V
Sbjct: 240 LSQIYTDGPGEALKAVKENGRYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRV 296
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R + GG +Q R L+ L+V TPGRL ++M G+ + L + VLDEADRM
Sbjct: 297 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRM 353
Query: 213 IENGHFRELQSII--DMLP 229
++ G +++ I+ D +P
Sbjct: 354 LDMGFEPQIRRIVEQDTMP 372
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 241 (89.9 bits), Expect = 8.8e-22, Sum P(2) = 8.8e-22
Identities = 64/210 (30%), Positives = 110/210 (52%)
Query: 20 EEELVSEA-EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
E+E+V + + E ++K + +LGF+ PTPIQ+ P A G+D++G
Sbjct: 107 EKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAM-SGRDMVGI 165
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 138
+ TGSGKTL++ LP + + A +L G+ G + L++ PTRELA+Q
Sbjct: 166 SATGSGKTLSYCLPAIVHI-----NAQPLLSP-GD--------GPI-VLVLAPTRELAVQ 210
Query: 139 VTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
+ + K +R + GG+ Q R L E+ + TPGRL +++ + +L
Sbjct: 211 IQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNL--- 267
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDML 228
+++ VLDEADRM++ G +++ I+D +
Sbjct: 268 RRVTYLVLDEADRMLDMGFEPQIRKIVDQI 297
Score = 43 (20.2 bits), Expect = 8.8e-22, Sum P(2) = 8.8e-22
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 253 RKKRQTLVFSATIA-----LSADFRK---KLKHGSLKLKQSVNGLNSIETLSERAGMRAN 304
R RQT++FSAT L+ D+ ++ GSL L S N + I + + A RA
Sbjct: 298 RPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHN-IKQIVEVVDNADKRAR 356
Query: 305 V 305
+
Sbjct: 357 L 357
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 179 (68.1 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 38/109 (34%), Positives = 66/109 (60%)
Query: 120 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVG 179
P+G +R L++ PTRELA Q+ + + + + +R I GG++ ++Q R L++ ++VV
Sbjct: 67 PRGRVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVA 126
Query: 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 228
PGRL + + G + + TL ++DEADRM + G ++QSI+ L
Sbjct: 127 CPGRLLDHIWRGTIDICGVETL---IIDEADRMFDMGFQPDIQSILKCL 172
Score = 144 (55.7 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 28/66 (42%), Positives = 44/66 (66%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
F+++N P +M + G++EPTPIQ IP +G D+IG A+TG+GKT A+ LP
Sbjct: 3 FESFN---FAPAVMAGVRACGYQEPTPIQAQAIPPIL-EGHDVIGLAQTGTGKTAAYALP 58
Query: 93 IMQRLL 98
++Q++L
Sbjct: 59 VIQKML 64
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 251 (93.4 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 69/185 (37%), Positives = 106/185 (57%)
Query: 44 LLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEERE- 102
LLM++I + +++PTPIQ IP+A G+D++G A+TGSGKT A+ P + ++++ +
Sbjct: 275 LLMEAIRKSEYEQPTPIQAMAIPSAL-SGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDL 333
Query: 103 KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMS 162
KAG+ G + A+I+ PTRELA+QV K+ K N+ + GG S
Sbjct: 334 KAGE---------------GPV-AVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGS 377
Query: 163 T-EKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFREL 221
E+ L E+VV TPGR+ +L+ G + L T +F V DEADRM + G ++
Sbjct: 378 KWEQSNELQNEGAEMVVCTPGRIIDLVKMGATNF--LRT-TFLVFDEADRMFDMGFEAQV 434
Query: 222 QSIID 226
+SI D
Sbjct: 435 KSISD 439
Score = 39 (18.8 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 247 TVSSLQRKKRQTLVFSAT 264
++S R RQ L+FSAT
Sbjct: 436 SISDHVRPDRQCLMFSAT 453
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 263 (97.6 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 63/199 (31%), Positives = 116/199 (58%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
++++++ + ++M +I + PTP+QK IP + +D++ A+TGSGKT AF LPI
Sbjct: 178 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPI 236
Query: 94 MQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+ ++ + +A + ++E G+ + K + +L++ PTRELA+Q+ + ++ + V
Sbjct: 237 LSQIYTDGPGEALRAMKENGKYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRV 293
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R + GG +Q R L+ L+V TPGRL ++M G+ + L + VLDEADRM
Sbjct: 294 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRM 350
Query: 213 IENGHFRELQSII--DMLP 229
++ G +++ I+ D +P
Sbjct: 351 LDMGFEPQIRRIVEQDTMP 369
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 263 (97.6 bits), Expect = 9.1e-22, P = 9.1e-22
Identities = 63/199 (31%), Positives = 116/199 (58%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
++++++ + ++M +I + PTP+QK IP + +D++ A+TGSGKT AF LPI
Sbjct: 179 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPI 237
Query: 94 MQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+ ++ + +A + ++E G+ + K + +L++ PTRELA+Q+ + ++ + V
Sbjct: 238 LSQIYTDGPGEALRAMKENGKYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRV 294
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R + GG +Q R L+ L+V TPGRL ++M G+ + L + VLDEADRM
Sbjct: 295 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRM 351
Query: 213 IENGHFRELQSII--DMLP 229
++ G +++ I+ D +P
Sbjct: 352 LDMGFEPQIRRIVEQDTMP 370
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 263 (97.6 bits), Expect = 9.1e-22, P = 9.1e-22
Identities = 63/199 (31%), Positives = 115/199 (57%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
++++++ + ++M +I + PTP+QK IP + +D++ A+TGSGKT AF LPI
Sbjct: 179 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPI 237
Query: 94 MQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+ ++ + +A + ++E G + K + +L++ PTRELA+Q+ + ++ + V
Sbjct: 238 LSQIYSDGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRV 294
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R + GG +Q R L+ L+V TPGRL ++M G+ + L + VLDEADRM
Sbjct: 295 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRM 351
Query: 213 IENGHFRELQSII--DMLP 229
++ G +++ I+ D +P
Sbjct: 352 LDMGFEPQIRRIVEQDTMP 370
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 263 (97.6 bits), Expect = 9.1e-22, P = 9.1e-22
Identities = 63/199 (31%), Positives = 115/199 (57%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
++++++ + ++M +I + PTP+QK IP + +D++ A+TGSGKT AF LPI
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPI 238
Query: 94 MQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+ ++ + +A + ++E G + K + +L++ PTRELA+Q+ + ++ + V
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRV 295
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R + GG +Q R L+ L+V TPGRL ++M G+ + L + VLDEADRM
Sbjct: 296 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRM 352
Query: 213 IENGHFRELQSII--DMLP 229
++ G +++ I+ D +P
Sbjct: 353 LDMGFEPQIRRIVEQDTMP 371
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 263 (97.6 bits), Expect = 9.1e-22, P = 9.1e-22
Identities = 63/199 (31%), Positives = 115/199 (57%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
++++++ + ++M +I + PTP+QK IP + +D++ A+TGSGKT AF LPI
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPI 238
Query: 94 MQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+ ++ + +A + ++E G + K + +L++ PTRELA+Q+ + ++ + V
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRV 295
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R + GG +Q R L+ L+V TPGRL ++M G+ + L + VLDEADRM
Sbjct: 296 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRM 352
Query: 213 IENGHFRELQSII--DMLP 229
++ G +++ I+ D +P
Sbjct: 353 LDMGFEPQIRRIVEQDTMP 371
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 263 (97.6 bits), Expect = 9.1e-22, P = 9.1e-22
Identities = 63/199 (31%), Positives = 115/199 (57%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
++++++ + ++M +I + PTP+QK IP + +D++ A+TGSGKT AF LPI
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPI 238
Query: 94 MQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+ ++ + +A + ++E G + K + +L++ PTRELA+Q+ + ++ + V
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRV 295
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R + GG +Q R L+ L+V TPGRL ++M G+ + L + VLDEADRM
Sbjct: 296 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRM 352
Query: 213 IENGHFRELQSII--DMLP 229
++ G +++ I+ D +P
Sbjct: 353 LDMGFEPQIRRIVEQDTMP 371
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 262 (97.3 bits), Expect = 9.3e-22, P = 9.3e-22
Identities = 73/216 (33%), Positives = 111/216 (51%)
Query: 35 AWNELR--LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
+W L+ LHPL++ ++ LGF TP+Q A IP + KD+ A TGSGKTLAF +P
Sbjct: 8 SWESLQVPLHPLVLGALRELGFLHMTPVQSATIPLFM-RNKDVAAEAVTGSGKTLAFVIP 66
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-N 151
I++ LL EK K + A++ITPTRELA+Q+ + L K
Sbjct: 67 ILEILLRREEKL---------------KKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQ 111
Query: 152 VRVVPIVGGMST-EKQERLLKARPELVVGTPGRLWELMSGGEKHL---VELHTLSFFVLD 207
+ +GG + E ER + ++V TPGRL ++ + L + +L VLD
Sbjct: 112 FSQILWIGGRNPGEDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASYVKSLDVLVLD 171
Query: 208 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
EADR+++ G + +I++ LP + + QTQ
Sbjct: 172 EADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQ 207
>UNIPROTKB|D6RJA6 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 GO:GO:0005730
EMBL:CH471062 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:Hs.406549 HGNC:HGNC:18681 ChiTaRS:DDX46 EMBL:AC006077
EMBL:AC010301 IPI:IPI00967303 SMR:D6RJA6 Ensembl:ENST00000507392
Uniprot:D6RJA6
Length = 471
Score = 259 (96.2 bits), Expect = 9.4e-22, P = 9.4e-22
Identities = 61/155 (39%), Positives = 98/155 (63%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W + + ++ S+ + G+++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 325 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMF 383
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ ++++R LEE GE G + A+I+TPTRELALQ+T K+ +K + +RV
Sbjct: 384 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 428
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189
V + GG +Q LK E++V TPGR+ ++++
Sbjct: 429 VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLA 463
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 263 (97.6 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 63/199 (31%), Positives = 115/199 (57%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
++++++ + ++M +I + PTP+QK IP + +D++ A+TGSGKT AF LPI
Sbjct: 222 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPI 280
Query: 94 MQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+ ++ + +A + ++E G + K + +L++ PTRELA+Q+ + ++ + V
Sbjct: 281 LSQIYSDGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRV 337
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R + GG +Q R L+ L+V TPGRL ++M G+ + L + VLDEADRM
Sbjct: 338 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRM 394
Query: 213 IENGHFRELQSII--DMLP 229
++ G +++ I+ D +P
Sbjct: 395 LDMGFEPQIRRIVEQDTMP 413
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 262 (97.3 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 67/216 (31%), Positives = 118/216 (54%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
DD E + ++++++ + ++M +I + PTP+QK IP + +D++
Sbjct: 142 DDIPVEATG-SNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLM 199
Query: 77 GAAETGSGKTLAFGLPIMQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135
A+TGSGKT AF LPI+ ++ + A + ++E G + K + +L++ PTREL
Sbjct: 200 ACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKENGRYGRR---KQYPISLVLAPTREL 256
Query: 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
A+Q+ + ++ A VR + GG +Q R L+ L+V TPGRL ++M G+
Sbjct: 257 AVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK--- 313
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSII--DMLP 229
+ L + VLDEADRM++ G +++ I+ D +P
Sbjct: 314 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP 349
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 189 (71.6 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 44/105 (41%), Positives = 62/105 (59%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
RALI++PTRELALQ KE+ K ++ I+GG E Q L P++++ TPGRL
Sbjct: 167 RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRL 226
Query: 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+ E +L +L ++ + V DEADR+ E G +LQ II LP
Sbjct: 227 VHVAV--EMNL-KLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLP 268
Score = 137 (53.3 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
VS+ D E + ++ + + + + L + K I + G+K PTPIQ+ IP
Sbjct: 73 VSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVIL-D 131
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 105
GKD++ A TGSGKT F LP+ +RL + G
Sbjct: 132 GKDVVAMARTGSGKTACFLLPMFERLKARSAQTG 165
Score = 38 (18.4 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 131 PTRELALQVTDHLKEVAKGINVRVV 155
P REL + + + E +G+ VV
Sbjct: 621 PQRELPQEEEEEMVETVEGVFTEVV 645
Score = 37 (18.1 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 100 EREKAGKMLEEKGEEAE 116
E++ AG +L+ G+EA+
Sbjct: 697 EQQVAGAVLDLMGDEAQ 713
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 262 (97.3 bits), Expect = 1.2e-21, P = 1.2e-21
Identities = 63/199 (31%), Positives = 115/199 (57%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
++++++ + ++M +I + PTP+QK IP + +D++ A+TGSGKT AF LPI
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPI 238
Query: 94 MQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+ ++ + +A + ++E G + K + +L++ PTRELA+Q+ + ++ + V
Sbjct: 239 LSQIYADGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRV 295
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R + GG +Q R L+ L+V TPGRL ++M G+ + L + VLDEADRM
Sbjct: 296 RPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRM 352
Query: 213 IENGHFRELQSII--DMLP 229
++ G +++ I+ D +P
Sbjct: 353 LDMGFEPQIRRIVEQDTMP 371
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 262 (97.3 bits), Expect = 1.2e-21, P = 1.2e-21
Identities = 63/199 (31%), Positives = 115/199 (57%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
++++++ + ++M +I + PTP+QK IP + +D++ A+TGSGKT AF LPI
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPI 238
Query: 94 MQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+ ++ + +A + ++E G + K + +L++ PTRELA+Q+ + ++ + V
Sbjct: 239 LSQIYADGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRV 295
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R + GG +Q R L+ L+V TPGRL ++M G+ + L + VLDEADRM
Sbjct: 296 RPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRM 352
Query: 213 IENGHFRELQSII--DMLP 229
++ G +++ I+ D +P
Sbjct: 353 LDMGFEPQIRRIVEQDTMP 371
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 189 (71.6 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 44/105 (41%), Positives = 62/105 (59%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
RALI++PTRELALQ KE+ K ++ I+GG E Q L P++++ TPGRL
Sbjct: 167 RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRL 226
Query: 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+ E +L +L ++ + V DEADR+ E G +LQ II LP
Sbjct: 227 VHVAV--EMNL-KLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLP 268
Score = 137 (53.3 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
VS+ D E + ++ + + + + L + K I + G+K PTPIQ+ IP
Sbjct: 73 VSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVIL-D 131
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 105
GKD++ A TGSGKT F LP+ +RL + G
Sbjct: 132 GKDVVAMARTGSGKTACFLLPMFERLKARSAQTG 165
Score = 37 (18.1 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 100 EREKAGKMLEEKGEEAE 116
E++ AG +L+ G+EA+
Sbjct: 697 EQQVAGAVLDLMGDEAQ 713
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 263 (97.6 bits), Expect = 1.3e-21, P = 1.3e-21
Identities = 65/180 (36%), Positives = 105/180 (58%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
L+K++ + + +PTPIQ +P A G+DIIG A+TGSGKT AF P++ ++++++
Sbjct: 280 LIKAVRKAEYTQPTPIQAQAVPTAL-SGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQL- 337
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
+ G+ P G LI+ PTREL+LQ+ + K+ K N+ VV GG S
Sbjct: 338 -----KPGD-----GPIG----LILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKW 383
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
+Q + L+ E++V TPGR+ +++ + L ++F VLDEADRM G +++SI
Sbjct: 384 EQSKALEQGAEIIVATPGRMIDMV---KMKATNLRRVTFLVLDEADRMFHMGFEPQVRSI 440
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 240 (89.5 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 68/205 (33%), Positives = 111/205 (54%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
E ++++D ++ ++ L L+K+I +GFK+PTPIQKACIP GKDI A TG+G
Sbjct: 202 EDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGL-LGKDICACAATGTG 260
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KT AF LP+++RL+ + +A P L + + T++LA +
Sbjct: 261 KTAAFALPVLERLIYKPRQAPVT------RVLVLVPTRELGIQVHSVTKQLAQSSLCVIT 314
Query: 145 EVAKGINVRVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWE-LMSGGEKHLVELHTLS 202
++ G+ GG+ + QE L+A P++++ TPGRL + L + HL + L
Sbjct: 315 TIS-GL------FAGGLDVKSQEAALRAAXPDILIATPGRLIDHLHNCPSFHLSSIEVL- 366
Query: 203 FFVLDEADRMIENGHFRELQSIIDM 227
+LDEADRM++ +++ II M
Sbjct: 367 --ILDEADRMLDEYFEEQMKEIIRM 389
Score = 46 (21.3 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 240 EQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK 281
EQ + + + SL R QT++FSAT+ D K L SLK
Sbjct: 381 EQMKEIIRMCSLHR---QTMLFSATMT---DEVKDLASVSLK 416
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 196 (74.1 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 56/172 (32%), Positives = 95/172 (55%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
L L I+PTRELALQ+ D+L E+ V V + GG+S + Q R +K +VV TPGR
Sbjct: 224 LSVLCISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKIKTA-NVVVATPGR 282
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
L +L++ G + L +++ VLDEADRM+E G ++++II SN SE+ Q
Sbjct: 283 LVDLINDGA---INLGKVNYLVLDEADRMLEKGFEEDIKTII--------SNTSNSER-Q 330
Query: 244 TCVTVSSLQRKKRQTL--VFSATIALSADFRKKLKHGSLKLKQSVNGLNSIE 293
T + ++ ++ R+ ++ + ++ R +L + ++ Q V +N +
Sbjct: 331 TLMFTATWPKEVRELANNFMNSPVKVTVGDRDELS-ANKRITQVVEVINKFD 381
Score = 122 (48.0 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 54 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLL 98
F +PTPIQ P GKD+IG AETGSGKT AFG+P + ++
Sbjct: 173 FDKPTPIQSVSWPFLL-SGKDVIGVAETGSGKTFAFGVPAINNII 216
Score = 42 (19.8 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 95 QRLLEEREKAGKM-LEEKGEEAEKYAPK 121
QR LE++EK K ++K E+ EK K
Sbjct: 63 QRKLEKQEKKDKKDKKDKKEKKEKKEKK 90
>UNIPROTKB|J3KS25 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1 Ensembl:ENST00000585024
Uniprot:J3KS25
Length = 188
Score = 149 (57.5 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 31/85 (36%), Positives = 54/85 (63%)
Query: 14 NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAAAHQG 72
NGPD E E V E+ + D+++++ L L++ IY GF++P+ IQ +A +P +G
Sbjct: 10 NGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI--KG 67
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRL 97
D+I A++G+GKT F + I+Q++
Sbjct: 68 YDVIAQAQSGTGKTATFAISILQQI 92
Score = 128 (50.1 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 28/90 (31%), Positives = 53/90 (58%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ-ERLLKARPELVVGTPGR 183
+AL++ PTRELA Q+ + + + +GG + + ++L P ++VGTPGR
Sbjct: 100 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGR 159
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMI 213
++++++ ++L + + FVLDEAD M+
Sbjct: 160 VFDMLN--RRYLSPKY-IKMFVLDEADEML 186
>UNIPROTKB|F6UN21 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
IPI:IPI00642800 SMR:F6UN21 Ensembl:ENST00000416969
Ensembl:ENST00000419338 Ensembl:ENST00000420958
Ensembl:ENST00000436919 Ensembl:ENST00000436995
Ensembl:ENST00000446909 Ensembl:ENST00000449863 Uniprot:F6UN21
Length = 236
Score = 170 (64.9 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 122 GHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PELVVG 179
G + L++ TRELA Q++ + +K + NV+V GG+S +K E +LK P +VVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171
Query: 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 229
TPGR+ L K L L + F+LDE D+M+E R ++Q I M P
Sbjct: 172 TPGRILALARN--KSL-NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219
Score = 118 (46.6 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 10 VVVSNGPDDAE---EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIP 66
V + G D AE ++ V + +S + + L P L+++I GF+ P+ +Q CIP
Sbjct: 18 VETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP 77
Query: 67 AAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
A G D++ A++G GKT F L +Q+L
Sbjct: 78 QAI-LGMDVLCQAKSGMGKTAVFVLATLQQL 107
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 261 (96.9 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 70/218 (32%), Positives = 121/218 (55%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
DD E+ ++++++ + ++M +I + PTP+QK IP + +D++
Sbjct: 164 DDIPVEVTGN-NCPPHIESFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLM 221
Query: 77 GAAETGSGKTLAFGLPIMQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135
A+TGSGKT AF LPI+ ++ + +A K ++E G + K + +L++ PTREL
Sbjct: 222 ACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKESGRYGRR---KQYPISLVLAPTREL 278
Query: 136 ALQVTDHLKEVAKGINVRVVPIV--GGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193
A+Q+ + ++ + RV+P V GG +Q R L+ L+V TPGRL ++M G+
Sbjct: 279 AVQIYEEARKFS--YRSRVLPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK- 335
Query: 194 HLVELHTLSFFVLDEADRMIENGHFRELQSII--DMLP 229
+ L + VLDEADRM++ G +++ II D +P
Sbjct: 336 --IGLDFCKYLVLDEADRMLDMGFEPQIRRIIEQDTMP 371
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 246 (91.7 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 67/209 (32%), Positives = 107/209 (51%)
Query: 20 EEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAA 79
E+E+ ++ ++E+ L +MK I R G+K PT IQ P A G + +G A
Sbjct: 267 EQEITVRGQVPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAM-SGSNFVGIA 325
Query: 80 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV 139
+TGSGKTL + LP + + ++ ++G+ G + AL++ PTRELA Q+
Sbjct: 326 KTGSGKTLGYILPAIVHINNQQPL------QRGD--------GPI-ALVLAPTRELAQQI 370
Query: 140 TDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 199
E VR + GG Q R L+ E+V+ TPGRL + +S G +L
Sbjct: 371 QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRC- 429
Query: 200 TLSFFVLDEADRMIENGHFRELQSIIDML 228
++ VLDEADRM++ G +++ I+ +
Sbjct: 430 --TYLVLDEADRMLDMGFEPQIRKIVSQI 456
Score = 40 (19.1 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 248 VSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAI 307
VS + R RQTL++SAT K+L L +N + S+E LS +R V +
Sbjct: 453 VSQI-RPDRQTLMWSATWPKEV---KQLAEDFLGNYIQIN-IGSLE-LSANHNIRQVVDV 506
Query: 308 VD 309
D
Sbjct: 507 CD 508
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 182 (69.1 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 45/111 (40%), Positives = 62/111 (55%)
Query: 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGT 180
K LRAL++TPTRELA QV + +V + GG+ST+KQ LK ++++ T
Sbjct: 74 KPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIAT 133
Query: 181 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231
PGRL +L+ L + TL F DEADRM++ G E+ I LP T
Sbjct: 134 PGRLLDLLRTESVSLSNIETLVF---DEADRMLDMGFKEEIDQITQYLPKT 181
Score = 122 (48.0 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++ L L+K+I + EPT IQK IP + D++ A+TG+GKT AF LPI+Q
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAK-HDVMARAQTGTGKTAAFALPILQ 65
Query: 96 RLL 98
+L+
Sbjct: 66 QLI 68
Score = 44 (20.5 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 254 KKRQTLVFSATIA 266
K +QTL+FSAT A
Sbjct: 180 KTKQTLLFSATFA 192
Score = 38 (18.4 bits), Expect = 7.3e-21, Sum P(3) = 7.3e-21
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 253 RKKRQTLVFSATIALSADFRKKLKHGSLK 281
R +Q LVF+ T + D K++ +K
Sbjct: 244 RNWKQVLVFTRTKQCADDLAKEMTKDGVK 272
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 182 (69.1 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 45/111 (40%), Positives = 62/111 (55%)
Query: 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGT 180
K LRAL++TPTRELA QV + +V + GG+ST+KQ LK ++++ T
Sbjct: 74 KPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIAT 133
Query: 181 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231
PGRL +L+ L + TL F DEADRM++ G E+ I LP T
Sbjct: 134 PGRLLDLLRTESVSLSNIETLVF---DEADRMLDMGFKEEIDQITQYLPKT 181
Score = 122 (48.0 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++ L L+K+I + EPT IQK IP + D++ A+TG+GKT AF LPI+Q
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAK-HDVMARAQTGTGKTAAFALPILQ 65
Query: 96 RLL 98
+L+
Sbjct: 66 QLI 68
Score = 44 (20.5 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 254 KKRQTLVFSATIA 266
K +QTL+FSAT A
Sbjct: 180 KTKQTLLFSATFA 192
Score = 38 (18.4 bits), Expect = 7.3e-21, Sum P(3) = 7.3e-21
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 253 RKKRQTLVFSATIALSADFRKKLKHGSLK 281
R +Q LVF+ T + D K++ +K
Sbjct: 244 RNWKQVLVFTRTKQCADDLAKEMTKDGVK 272
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 260 (96.6 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 64/197 (32%), Positives = 113/197 (57%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++++ + ++M +I + PTP+QK IP + +D++ A+TGSG T AF LPI+
Sbjct: 175 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGCTAAFLLPILS 233
Query: 96 RLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
++ + +A K ++E G + K + +L++ PTRELA+Q+ + ++ + VR
Sbjct: 234 QIYTDGPGEALKAMKENGRYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRVRP 290
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG T +Q R L+ L+V TPGRL ++M G+ + L + VLDEADRM++
Sbjct: 291 CVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRMLD 347
Query: 215 NGHFRELQSII--DMLP 229
G +++ I+ D +P
Sbjct: 348 MGFEPQIRRIVEQDTMP 364
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 260 (96.6 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 69/217 (31%), Positives = 119/217 (54%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK-DI 75
DD E + + ++++ + ++M +I + PTP+QK IP +GK D+
Sbjct: 159 DDIPVEATG-SNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPII--KGKRDL 215
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134
+ A+TGSGKT AF LPI+ ++ + +A K ++E G + K + +L++ PTRE
Sbjct: 216 MACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRR---KQYPISLVLAPTRE 272
Query: 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
LA+Q+ + ++ + VR + GG +Q R L+ L+V TPGRL ++M G+
Sbjct: 273 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK-- 330
Query: 195 LVELHTLSFFVLDEADRMIENGHFRELQSII--DMLP 229
+ L + VLDEADRM++ G +++ I+ D +P
Sbjct: 331 -IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP 366
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 182 (69.1 bits), Expect = 1.9e-21, Sum P(3) = 1.9e-21
Identities = 37/105 (35%), Positives = 67/105 (63%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
R LI+ PTRELA QV ++ ++ K + + + ++GG+S ++QE LL+ ++++ TPGRL
Sbjct: 77 RCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIATPGRL 136
Query: 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+ G+ ++ + TL ++DEADRM++ G +++ I LP
Sbjct: 137 MDQFDRGKLLMMGVETL---IIDEADRMLDMGFIPDIEKICAKLP 178
Score = 131 (51.2 bits), Expect = 1.9e-21, Sum P(3) = 1.9e-21
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
++K++ G+ PTPIQ+ IP G D+ G A+TG+GKT AF LP++QRL R +A
Sbjct: 15 ILKAVTESGYTIPTPIQREAIPHIL-MGGDVTGVAQTGTGKTAAFVLPMIQRLSTGRARA 73
Score = 41 (19.5 bits), Expect = 1.9e-21, Sum P(3) = 1.9e-21
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 256 RQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSE 297
RQTL+FSAT K K + + ET+S+
Sbjct: 181 RQTLLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQ 222
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 260 (96.6 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 69/217 (31%), Positives = 119/217 (54%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK-DI 75
DD E + + ++++ + ++M +I + PTP+QK IP +GK D+
Sbjct: 162 DDIPVEATG-SNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPII--KGKRDL 218
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134
+ A+TGSGKT AF LPI+ ++ + +A K ++E G + K + +L++ PTRE
Sbjct: 219 MACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRR---KQYPISLVLAPTRE 275
Query: 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
LA+Q+ + ++ + VR + GG +Q R L+ L+V TPGRL ++M G+
Sbjct: 276 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK-- 333
Query: 195 LVELHTLSFFVLDEADRMIENGHFRELQSII--DMLP 229
+ L + VLDEADRM++ G +++ I+ D +P
Sbjct: 334 -IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP 369
>WB|WBGene00010280 [details] [associations]
symbol:F58G11.2a species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:Z81094 GeneID:179855
KEGG:cel:CELE_F58G11.2 CTD:179855 RefSeq:NP_001256533.1
ProteinModelPortal:P90897 SMR:P90897 STRING:P90897 PaxDb:P90897
EnsemblMetazoa:F58G11.2a UCSC:F58G11.2 WormBase:F58G11.2a
InParanoid:P90897 OMA:HGRPDDR NextBio:907138 Uniprot:P90897
Length = 959
Score = 248 (92.4 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 66/201 (32%), Positives = 107/201 (53%)
Query: 15 GPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKD 74
G D A E + AE +W LHP +++++ R+ + IQ A IP G D
Sbjct: 363 GQDRAVE--IRNAEKDVRLTSWTNSGLHPTILETLKRIKYNNVRTIQGAMIPQVL-DGHD 419
Query: 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134
++G AET +GKT AFGLPI+ ++L +M EE +A + G L ALI+ PTRE
Sbjct: 420 VLGQAETSAGKTAAFGLPIIDKIL-------RMDEETRNKARQ--DDGPL-ALILAPTRE 469
Query: 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
LA Q+ + L+ + ++ V+ G + ++ ++++GT GR+ + + H
Sbjct: 470 LAAQIHEALRTYCQNTDIIVLLSYGQSDRARSLNEIRNGCDILIGTCGRIMDFTV--KSH 527
Query: 195 LVELHTLSFFVLDEADRMIEN 215
+ LH L F V DEADR++++
Sbjct: 528 ISLLH-LRFLVFDEADRLLQD 547
Score = 41 (19.5 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 22/84 (26%), Positives = 37/84 (44%)
Query: 237 GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLS 296
GQ E + + +++ + KR L F L A+ KL+ LKQ+VNG +
Sbjct: 598 GQDEMIK--IVLANGRLSKRVNLEFFECKGL-AEKNAKLRE---ILKQNVNGKTLKTIIF 651
Query: 297 ERAGMRANVAIVDLTNVSVLANKL 320
+ + + LT+ +LA L
Sbjct: 652 VQKKDQCDACAAKLTSGGMLAQTL 675
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 240 (89.5 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 63/190 (33%), Positives = 101/190 (53%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
L LL+++I F +PTP+QK +P A G+D++ A+TGSGKT F P++ E
Sbjct: 193 LDELLVENIQLSRFTKPTPVQKYSVPIVA-AGRDLMACAQTGSGKTGGFLFPVLS---ES 248
Query: 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG 160
K + E + K + L++ PTREL Q+ + K+ + VR + GG
Sbjct: 249 YMKGPAPVPESNGAFSSH--KVYPTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGG 306
Query: 161 MSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 220
+Q R + +L+V TPGRL +L+ G+ V L + + VLDEADRM++ G +
Sbjct: 307 ADIGQQMRNMDRGCDLLVATPGRLKDLLDRGK---VSLANIRYLVLDEADRMLDMGFEPQ 363
Query: 221 LQSIIDMLPM 230
++ I++ M
Sbjct: 364 IRYIVEECDM 373
Score = 44 (20.5 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 254 KKRQTLVFSATIA-----LSADFRK 273
K RQTL+FSAT L+ DF K
Sbjct: 377 KDRQTLMFSATFPRDIQMLARDFLK 401
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 239 (89.2 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 70/208 (33%), Positives = 108/208 (51%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
LV I ++ E++ +++ + + G PTPIQ IP G+D+IG A TG
Sbjct: 170 LVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTIL-SGRDMIGIAFTG 228
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142
SGKTL F LP++ LE+ EK + +G P G LII P+RELA Q
Sbjct: 229 SGKTLVFTLPVIMFCLEQ-EKRLPFSKREG-------PYG----LIICPSRELARQTHGI 276
Query: 143 LKEVAKGINVRVVPI------VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
L+ + + P+ +GGMS ++Q ++ ++V TPGRL +L+ +K +V
Sbjct: 277 LEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLL---QKKMV 333
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSI 224
L + LDEADRMI+ G ++++I
Sbjct: 334 SLDICRYLALDEADRMIDMGFEGDIRTI 361
Score = 49 (22.3 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 247 TVSSLQRKKRQTLVFSATIALSA-DFRKKLKHGSLKLKQSVNGLNSIETLSE 297
T+ S + +RQTL+FSAT+ +F K + + G S++ + E
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQE 411
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 239 (89.2 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 70/208 (33%), Positives = 108/208 (51%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
LV I ++ E++ +++ + + G PTPIQ IP G+D+IG A TG
Sbjct: 170 LVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTIL-SGRDMIGIAFTG 228
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142
SGKTL F LP++ LE+ EK + +G P G LII P+RELA Q
Sbjct: 229 SGKTLVFTLPVIMFCLEQ-EKRLPFSKREG-------PYG----LIICPSRELARQTHGI 276
Query: 143 LKEVAKGINVRVVPI------VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
L+ + + P+ +GGMS ++Q ++ ++V TPGRL +L+ +K +V
Sbjct: 277 LEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLL---QKKMV 333
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSI 224
L + LDEADRMI+ G ++++I
Sbjct: 334 SLDICRYLALDEADRMIDMGFEGDIRTI 361
Score = 49 (22.3 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 247 TVSSLQRKKRQTLVFSATIALSA-DFRKKLKHGSLKLKQSVNGLNSIETLSE 297
T+ S + +RQTL+FSAT+ +F K + + G S++ + E
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQE 411
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 239 (89.2 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 70/208 (33%), Positives = 108/208 (51%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
LV I ++ E++ +++ + + G PTPIQ IP G+D+IG A TG
Sbjct: 170 LVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTIL-SGRDMIGIAFTG 228
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142
SGKTL F LP++ LE+ EK + +G P G LII P+RELA Q
Sbjct: 229 SGKTLVFTLPVIMFCLEQ-EKRLPFSKREG-------PYG----LIICPSRELARQTHGI 276
Query: 143 LKEVAKGINVRVVPI------VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
L+ + + P+ +GGMS ++Q ++ ++V TPGRL +L+ +K +V
Sbjct: 277 LEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLL---QKKMV 333
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSI 224
L + LDEADRMI+ G ++++I
Sbjct: 334 SLDICRYLALDEADRMIDMGFEGDIRTI 361
Score = 49 (22.3 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 247 TVSSLQRKKRQTLVFSATIALSA-DFRKKLKHGSLKLKQSVNGLNSIETLSE 297
T+ S + +RQTL+FSAT+ +F K + + G S++ + E
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQE 411
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 259 (96.2 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 69/212 (32%), Positives = 111/212 (52%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
VS + + +NE P +M+++ R G+ +PTP+QK IP +D++ A+TGS
Sbjct: 129 VSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLL-ANRDLMSCAQTGS 187
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLE-EKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142
GKT AF LPI+Q +L K G Y P AL+++PTRELA+Q+
Sbjct: 188 GKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRT--YYPC----ALVLSPTRELAIQIHKE 241
Query: 143 LKEVAKGINVRVVPIVGGMSTEK-QERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
+ + N++ + GG + Q L+A +++ TPGRL +++ G + L
Sbjct: 242 ATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQG---FIGLAGC 298
Query: 202 SFFVLDEADRMIENGHFRELQSIID--MLPMT 231
+ VLDEADRM++ G +++ I+ M P T
Sbjct: 299 RYLVLDEADRMLDMGFEPQIRKIVGQGMPPKT 330
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 258 (95.9 bits), Expect = 2.5e-21, P = 2.5e-21
Identities = 73/216 (33%), Positives = 110/216 (50%)
Query: 35 AWNELR--LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
AW L+ LHP ++ ++ LGF TP+Q A IP + KD+ A TGSGKTLAF +P
Sbjct: 8 AWESLQVPLHPRVLGALRELGFPHMTPVQSATIPLFM-KNKDVAAEAVTGSGKTLAFVIP 66
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-N 151
I++ LL EK K + A++ITPTRELA+Q+ + L K
Sbjct: 67 ILEILLRREEKL---------------KKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQ 111
Query: 152 VRVVPIVGGMST-EKQERLLKARPELVVGTPGRLWELMSGGEKHLVE---LHTLSFFVLD 207
+ +GG + E ER + ++V TPGRL ++ + L + +L VLD
Sbjct: 112 FSQILWIGGRNPGEDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLD 171
Query: 208 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
EADR+++ G + +I++ LP + + QTQ
Sbjct: 172 EADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQ 207
>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
symbol:PFE0430w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 253 (94.1 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 58/181 (32%), Positives = 106/181 (58%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
+++ + + FK+ IQ IPA G+D+I AETGSGKTL++ P+++ +L +
Sbjct: 734 ILQILEKKNFKKMYNIQMQTIPALMC-GRDVIAIAETGSGKTLSYLFPVIRHVLHQEPLR 792
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
G + ++I+TPTREL++QV + K K +N+ ++ + GG +
Sbjct: 793 NN--------------DGPI-SIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIA 837
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
+Q ++LK E++VGTPGR+ ++++ + L+ +SF VLDEADR+++ G ++ +I
Sbjct: 838 RQLKVLKKGVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNI 897
Query: 225 I 225
+
Sbjct: 898 L 898
Score = 40 (19.1 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 237 GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272
G +QT T+ ++++ + L+ ++ +A D +
Sbjct: 1002 GGQDQTDRQFTLEKFKKEENKVLIATSVMARGIDIK 1037
>UNIPROTKB|Q8I416 [details] [associations]
symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 253 (94.1 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 58/181 (32%), Positives = 106/181 (58%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
+++ + + FK+ IQ IPA G+D+I AETGSGKTL++ P+++ +L +
Sbjct: 734 ILQILEKKNFKKMYNIQMQTIPALMC-GRDVIAIAETGSGKTLSYLFPVIRHVLHQEPLR 792
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
G + ++I+TPTREL++QV + K K +N+ ++ + GG +
Sbjct: 793 NN--------------DGPI-SIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIA 837
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
+Q ++LK E++VGTPGR+ ++++ + L+ +SF VLDEADR+++ G ++ +I
Sbjct: 838 RQLKVLKKGVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNI 897
Query: 225 I 225
+
Sbjct: 898 L 898
Score = 40 (19.1 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 237 GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272
G +QT T+ ++++ + L+ ++ +A D +
Sbjct: 1002 GGQDQTDRQFTLEKFKKEENKVLIATSVMARGIDIK 1037
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 168 (64.2 bits), Expect = 2.6e-21, Sum P(3) = 2.6e-21
Identities = 43/108 (39%), Positives = 62/108 (57%)
Query: 125 RALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
+ALI+ PTRELALQV + AK + V VV + GG Q + ++ ++VV TPGR
Sbjct: 76 QALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGR 135
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231
L + + EK L T++ VLDEAD M++ G +L+ I +P T
Sbjct: 136 LCDHLRRDEKVLA---TVNHLVLDEADEMLKLGFMDDLEVIFKAMPET 180
Score = 144 (55.7 bits), Expect = 2.6e-21, Sum P(3) = 2.6e-21
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
++ E + L LHP ++ ++ G++EP+ IQ+ IP G D+IG A+TG+GKT A
Sbjct: 1 MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIIL-AGHDMIGQAQTGTGKTAA 59
Query: 89 FGLPIMQRL-LEEREKAGKMLEEKGEEAEKYA 119
F LPI+ R+ +RE +L E A + A
Sbjct: 60 FALPILHRIDPSKREPQALILAPTRELALQVA 91
Score = 45 (20.9 bits), Expect = 2.6e-21, Sum P(3) = 2.6e-21
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 256 RQTLVFSATI-----ALSADFRKKLKHGSLKLK-QSVNGLNSIETLSERAGMRANVAIVD 309
RQT++FSAT+ A++ K KH ++ K Q+V + L A + + A++
Sbjct: 181 RQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVH-ADQKTS-AVLS 238
Query: 310 LTNV 313
L V
Sbjct: 239 LLEV 242
WARNING: HSPs involving 597 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.365 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 326 326 0.00087 116 3 11 22 0.43 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 847
No. of states in DFA: 601 (64 KB)
Total size of DFA: 195 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.96u 0.11s 31.07t Elapsed: 00:00:01
Total cpu time: 31.00u 0.11s 31.11t Elapsed: 00:00:01
Start: Tue May 21 02:57:31 2013 End: Tue May 21 02:57:32 2013
WARNINGS ISSUED: 2