BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020452
(326 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255554328|ref|XP_002518204.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223542800|gb|EEF44337.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 496
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/318 (82%), Positives = 280/318 (88%), Gaps = 5/318 (1%)
Query: 10 VVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA 69
VSNG DD + E V EAE F AWNELRLHPLLMKSIYRLGFKEPTPIQKACIP AA
Sbjct: 139 AAVSNGEDDTDGESVDEAE----FHAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPPAA 194
Query: 70 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129
HQGKD+IGAAETGSGKTLAFGLPI+QRLLEER+KA L+E GEEAEKY P G LRALII
Sbjct: 195 HQGKDVIGAAETGSGKTLAFGLPILQRLLEERDKAANYLDEMGEEAEKYGPTGLLRALII 254
Query: 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189
TPTRELALQVTDHLKE A GIN++VVPIVGGMSTEKQERLLKARPE++VGTPGRLWELMS
Sbjct: 255 TPTRELALQVTDHLKEAAMGINIKVVPIVGGMSTEKQERLLKARPEIIVGTPGRLWELMS 314
Query: 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVS 249
GGE HLVELH+LSFFVLDEADRMIENGHFRELQSIIDMLPM +GS EG S+ TQ CVT+S
Sbjct: 315 GGESHLVELHSLSFFVLDEADRMIENGHFRELQSIIDMLPMASGSVEGLSQNTQNCVTLS 374
Query: 250 SLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQ-SVNGLNSIETLSERAGMRANVAIV 308
+LQRKKRQT VFSATIALS DFRKKLK GSLK KQ + +GLNSIE LSERAGMR N AI+
Sbjct: 375 NLQRKKRQTFVFSATIALSTDFRKKLKRGSLKPKQLTADGLNSIENLSERAGMRPNAAII 434
Query: 309 DLTNVSVLANKLEESFIE 326
DLTN S+LA+KLEESFIE
Sbjct: 435 DLTNASILAHKLEESFIE 452
>gi|224107545|ref|XP_002314517.1| predicted protein [Populus trichocarpa]
gi|222863557|gb|EEF00688.1| predicted protein [Populus trichocarpa]
Length = 847
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 256/316 (81%), Positives = 280/316 (88%), Gaps = 5/316 (1%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
VSN DD E E V E TEF WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ
Sbjct: 144 VSNNKDDVEGESVDE----TEFYGWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 199
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131
GKD++GAAETGSGKTLAFGLPI+QRLLEE++KA M + GEEAE++APKG LRALIITP
Sbjct: 200 GKDVVGAAETGSGKTLAFGLPILQRLLEEQDKASNMGDNVGEEAERFAPKGLLRALIITP 259
Query: 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191
TRELA+QVTDH KE A GIN+RVV IVGGMSTEKQERLLKARPE++VGTPGRLWELMSGG
Sbjct: 260 TRELAIQVTDHFKEAAHGINIRVVSIVGGMSTEKQERLLKARPEIIVGTPGRLWELMSGG 319
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251
EKHLVELH+LSFFVLDEADRMIENGHFRELQSIIDMLPM +GS GQS+ ++ C T+S++
Sbjct: 320 EKHLVELHSLSFFVLDEADRMIENGHFRELQSIIDMLPMASGSIGGQSQSSENCQTLSNM 379
Query: 252 QRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSV-NGLNSIETLSERAGMRANVAIVDL 310
Q KKRQT VFSATIALSADFRKKLK GSLK KQS+ +GLNSIE LSERAGMRAN AI+DL
Sbjct: 380 QIKKRQTFVFSATIALSADFRKKLKRGSLKSKQSMADGLNSIEMLSERAGMRANAAIIDL 439
Query: 311 TNVSVLANKLEESFIE 326
TN S+LANKLEESFIE
Sbjct: 440 TNASILANKLEESFIE 455
>gi|356520440|ref|XP_003528870.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like [Glycine
max]
Length = 810
Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/315 (79%), Positives = 277/315 (87%), Gaps = 5/315 (1%)
Query: 13 SNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
+N DD EE V E TEF AWNELRLHPLL+K+I +LGFKEPTPIQKACIPAAAHQG
Sbjct: 158 TNVKDDIGEEDVDE----TEFYAWNELRLHPLLLKAICKLGFKEPTPIQKACIPAAAHQG 213
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132
KD++GAAETGSGKTLAFGLPI+QRLLEEREKAG M+ E+GEE EKYA G LRALII PT
Sbjct: 214 KDVVGAAETGSGKTLAFGLPILQRLLEEREKAGNMVGERGEEPEKYASTGLLRALIIAPT 273
Query: 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192
RELALQVTDHLK VAK INVRV PIVGG+ EKQERLLKA+PE+VVGTPGRLWELMS GE
Sbjct: 274 RELALQVTDHLKAVAKHINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGE 333
Query: 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQ 252
KHLVELH+LSFFVLDEADRM++NGHF+ELQSIIDMLPM+N S E S+ Q+CVTVSS Q
Sbjct: 334 KHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNNSAEDNSQHVQSCVTVSSYQ 393
Query: 253 RKKRQTLVFSATIALSADFRKKLKHGSLKLKQSV-NGLNSIETLSERAGMRANVAIVDLT 311
RKKRQTLVFSAT+ALS+DFRKKLK GS+K KQS+ +GLNSIETLSERAGMR+N AI+DLT
Sbjct: 394 RKKRQTLVFSATVALSSDFRKKLKRGSIKQKQSLTDGLNSIETLSERAGMRSNAAIIDLT 453
Query: 312 NVSVLANKLEESFIE 326
N S+LA KLEESFIE
Sbjct: 454 NPSILATKLEESFIE 468
>gi|225433316|ref|XP_002282504.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Vitis vinifera]
gi|296083755|emb|CBI23744.3| unnamed protein product [Vitis vinifera]
Length = 788
Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust.
Identities = 252/318 (79%), Positives = 274/318 (86%), Gaps = 7/318 (2%)
Query: 10 VVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA 69
VSN DD E + V EAE F WNELRLHPLLMKSI+RLGFK+PTPIQKACIPAAA
Sbjct: 135 ATVSNDKDDVEGDSVDEAE----FYEWNELRLHPLLMKSIHRLGFKQPTPIQKACIPAAA 190
Query: 70 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129
HQGKD++GA+ETGSGKTLA GLPI+QRLLEEREKA + L E EE KYA G LRALII
Sbjct: 191 HQGKDVVGASETGSGKTLALGLPILQRLLEEREKAAEPLAENSEE--KYAEGGILRALII 248
Query: 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189
TPTRELALQVTDHLKEVAKG NVRVVPIVGGMSTEKQERLLKARPE+VVGTPGRLWELMS
Sbjct: 249 TPTRELALQVTDHLKEVAKGTNVRVVPIVGGMSTEKQERLLKARPEIVVGTPGRLWELMS 308
Query: 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVS 249
GE HLVELH+LSFFVLDEADRM+ENGHF ELQSIID+LP T+GS E S+ T+ C TVS
Sbjct: 309 RGEDHLVELHSLSFFVLDEADRMVENGHFHELQSIIDILPKTSGSMESLSQNTENCFTVS 368
Query: 250 SLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVN-GLNSIETLSERAGMRANVAIV 308
++QRKKRQT VFSATIALSADFRKKLK G+L+ KQ +N GLNSIETLSERAGMR N AIV
Sbjct: 369 NIQRKKRQTFVFSATIALSADFRKKLKRGALRSKQLMNDGLNSIETLSERAGMRPNAAIV 428
Query: 309 DLTNVSVLANKLEESFIE 326
DLTN S++ANKLEESFIE
Sbjct: 429 DLTNASIMANKLEESFIE 446
>gi|449458872|ref|XP_004147170.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like [Cucumis
sativus]
Length = 848
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 240/311 (77%), Positives = 270/311 (86%), Gaps = 6/311 (1%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
D+ E++ V E TE+ AWNELRLHPLLMKSIY+LGFKEPT IQKACIPAAA+QGKD++
Sbjct: 203 DEVEKDAVDE----TEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVV 258
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
GAAETGSGKTLAFGLPI+QR L+EREK+GKM EEKG +A+KYAPK LRALIITPTRELA
Sbjct: 259 GAAETGSGKTLAFGLPILQRFLDEREKSGKMSEEKGVDAKKYAPKSLLRALIITPTRELA 318
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
LQVTDHLK VA GI++RVVPIVGGMSTEKQERLL+ RPE+VVGTPGRLWELMSGGEKHLV
Sbjct: 319 LQVTDHLKAVAVGIDIRVVPIVGGMSTEKQERLLRTRPEVVVGTPGRLWELMSGGEKHLV 378
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
EL LSFFVLDEADRMIENGHFRELQSIIDMLP+TNGS E + + +T QRKKR
Sbjct: 379 ELEALSFFVLDEADRMIENGHFRELQSIIDMLPVTNGSAENL-QNAENSLTTPISQRKKR 437
Query: 257 QTLVFSATIALSADFRKKLKHGSLKLKQS-VNGLNSIETLSERAGMRANVAIVDLTNVSV 315
QTLVFSAT++LS+DFRKKLK S K QS ++GLNSIE LSERAG+R NVA+++LTN SV
Sbjct: 438 QTLVFSATLSLSSDFRKKLKRVSSKPNQSGMDGLNSIEALSERAGIRPNVAVINLTNTSV 497
Query: 316 LANKLEESFIE 326
LAN LEESFIE
Sbjct: 498 LANNLEESFIE 508
>gi|449509127|ref|XP_004163501.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like, partial
[Cucumis sativus]
Length = 784
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/311 (77%), Positives = 270/311 (86%), Gaps = 6/311 (1%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
D+ E++ V E TE+ AWNELRLHPLLMKSIY+LGFKEPT IQKACIPAAA+QGKD++
Sbjct: 183 DEVEKDAVDE----TEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVV 238
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
GAAETGSGKTLAFGLPI+QR L+EREK+GKM EEKG +A+KYAPK LRALIITPTRELA
Sbjct: 239 GAAETGSGKTLAFGLPILQRFLDEREKSGKMSEEKGVDAKKYAPKSLLRALIITPTRELA 298
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
LQVTDHLK VA GI++RVVPIVGGMSTEKQERLL+ RPE+VVGTPGRLWELMSGGEKHLV
Sbjct: 299 LQVTDHLKAVAVGIDIRVVPIVGGMSTEKQERLLRTRPEVVVGTPGRLWELMSGGEKHLV 358
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
EL LSFFVLDEADRMIENGHFRELQSIIDMLP+TNGS E + + +T QRKKR
Sbjct: 359 ELEALSFFVLDEADRMIENGHFRELQSIIDMLPVTNGSAENL-QNAENSLTTPISQRKKR 417
Query: 257 QTLVFSATIALSADFRKKLKHGSLKLKQS-VNGLNSIETLSERAGMRANVAIVDLTNVSV 315
QTLVFSAT++LS+DFRKKLK S K QS ++GLNSIE LSERAG+R NVA+++LTN SV
Sbjct: 418 QTLVFSATLSLSSDFRKKLKRVSSKPNQSGMDGLNSIEALSERAGIRPNVAVINLTNTSV 477
Query: 316 LANKLEESFIE 326
LAN LEESFIE
Sbjct: 478 LANNLEESFIE 488
>gi|357505253|ref|XP_003622915.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355497930|gb|AES79133.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 798
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/312 (75%), Positives = 267/312 (85%), Gaps = 6/312 (1%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
D +EE + E TE+ AWNELRLHP LMK+I++LGFKEPTPIQKAC+PAAAHQGKD+I
Sbjct: 149 DSVDEENIDE----TEYYAWNELRLHPRLMKAIHKLGFKEPTPIQKACVPAAAHQGKDVI 204
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA-EKYAPKGHLRALIITPTREL 135
GAAETGSGKTLAFGLPI+QRLLEEREKA + GEEA EKYA G LR+LII PTREL
Sbjct: 205 GAAETGSGKTLAFGLPILQRLLEEREKAESISGVNGEEAAEKYATTGLLRSLIIAPTREL 264
Query: 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
ALQV HLK VAK INVRV IVGG+ EKQERLLKARPE+VV TPGRLWELMS GEKHL
Sbjct: 265 ALQVAKHLKAVAKHINVRVTAIVGGILPEKQERLLKARPEIVVATPGRLWELMSSGEKHL 324
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK 255
+ELH+LSFFVLDEADRM+++GHF+ELQSIIDMLPM+N S+E S+ Q CVTVSS+Q+KK
Sbjct: 325 IELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISSEDNSKDAQNCVTVSSIQKKK 384
Query: 256 RQTLVFSATIALSADFRKKLKHGSLKLKQ-SVNGLNSIETLSERAGMRANVAIVDLTNVS 314
RQTLVFSAT+ALSADFRKKLK GS++ KQ S +GL+SIETLSERAGMR N AI+DLTN S
Sbjct: 385 RQTLVFSATVALSADFRKKLKRGSIQKKQLSTDGLDSIETLSERAGMRPNAAIIDLTNPS 444
Query: 315 VLANKLEESFIE 326
+LA K+EESFIE
Sbjct: 445 ILAAKIEESFIE 456
>gi|297834580|ref|XP_002885172.1| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis lyrata subsp.
lyrata]
gi|297331012|gb|EFH61431.1| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis lyrata subsp.
lyrata]
Length = 831
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/320 (71%), Positives = 264/320 (82%), Gaps = 1/320 (0%)
Query: 8 TVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPA 67
T VS D EE V EI EF AW +RLHPLLMKSIY LGFK+PT IQKAC
Sbjct: 162 TSDAVSCDDDYKVEEQVEGEEIPPEFSAWGLMRLHPLLMKSIYHLGFKQPTEIQKACFSI 221
Query: 68 AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127
AA+QGKD+IGAAETGSGKTLAFGLPI+QRLL+EREK GK+ KGE+A+KYA G+LRAL
Sbjct: 222 AAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEKAQKYAADGYLRAL 281
Query: 128 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187
IITPTRELALQVTDHLK A+ +NV+VVPIVGGMS+ KQERLLK +PE+VVGTPGRLWEL
Sbjct: 282 IITPTRELALQVTDHLKNAAENLNVKVVPIVGGMSSAKQERLLKGKPEIVVGTPGRLWEL 341
Query: 188 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVT 247
MS GEKHLVELH+LSFFVLDEADRM+E+GHFRELQSIID+LP+T+ NEG+ + Q+ T
Sbjct: 342 MSAGEKHLVELHSLSFFVLDEADRMVESGHFRELQSIIDLLPVTDRPNEGKMQTVQSSDT 401
Query: 248 VSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG-LNSIETLSERAGMRANVA 306
VS+ +KKRQT VFSATIALS+DFRKKLK GS K K S +G +NSIE LSERAGMR +VA
Sbjct: 402 VSNAPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKPSSSGEVNSIEVLSERAGMRDSVA 461
Query: 307 IVDLTNVSVLANKLEESFIE 326
I+DLT S+LA K+EESFI+
Sbjct: 462 IIDLTTASILAPKIEESFIK 481
>gi|227202696|dbj|BAH56821.1| AT3G16840 [Arabidopsis thaliana]
Length = 827
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/323 (70%), Positives = 266/323 (82%), Gaps = 1/323 (0%)
Query: 5 NCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKAC 64
N VS DD EE V E EI EF AW+ +RLHPLLMKSIYRL FKEPT IQKAC
Sbjct: 162 NQDASAAVSCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKAC 221
Query: 65 IPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 124
AA+QGKD+IGAAETGSGKTLAFGLPI+QRLL+EREK GK+ KGEEA+KYA G+L
Sbjct: 222 FNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYL 281
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
RALIITPTRELALQVT+HL+ AK ++V+VVPIVGGM +EKQER LK +PE+VV TPGRL
Sbjct: 282 RALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRL 341
Query: 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQT 244
WELMS GEKHLVELH+LSFFVLDEADRM+E GHFRELQSI+D+LP+T+ NEG+++ ++
Sbjct: 342 WELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDRPNEGKTQTVKS 401
Query: 245 CVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG-LNSIETLSERAGMRA 303
TV ++ +KKRQT VFSATIALS+DFRKKLK GS K KQS +G +NSIE LSERAGMR
Sbjct: 402 NDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRD 461
Query: 304 NVAIVDLTNVSVLANKLEESFIE 326
NVAI+DLT S+LA K+EESFI+
Sbjct: 462 NVAIIDLTTTSILAPKIEESFIK 484
>gi|79404523|ref|NP_188307.3| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis thaliana]
gi|374095486|sp|Q93Y39.3|RH13_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 13
gi|332642351|gb|AEE75872.1| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis thaliana]
Length = 826
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/316 (71%), Positives = 265/316 (83%), Gaps = 1/316 (0%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
VS DD EE V E EI EF AW+ +RLHPLLMKSIYRL FKEPT IQKAC AA+Q
Sbjct: 168 VSCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQ 227
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131
GKD+IGAAETGSGKTLAFGLPI+QRLL+EREK GK+ KGEEA+KYA G+LRALIITP
Sbjct: 228 GKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITP 287
Query: 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191
TRELALQVT+HL+ AK ++V+VVPIVGGM +EKQER LK +PE+VV TPGRLWELMS G
Sbjct: 288 TRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAG 347
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251
EKHLVELH+LSFFVLDEADRM+E GHFRELQSI+D+LP+T+ NEG+++ ++ TV ++
Sbjct: 348 EKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNV 407
Query: 252 QRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG-LNSIETLSERAGMRANVAIVDL 310
+KKRQT VFSATIALS+DFRKKLK GS K KQS +G +NSIE LSERAGMR NVAI+DL
Sbjct: 408 PKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDL 467
Query: 311 TNVSVLANKLEESFIE 326
T S+LA K+EESFI+
Sbjct: 468 TTTSILAPKIEESFIK 483
>gi|7939577|dbj|BAA95778.1| ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 832
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/316 (71%), Positives = 265/316 (83%), Gaps = 1/316 (0%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
VS DD EE V E EI EF AW+ +RLHPLLMKSIYRL FKEPT IQKAC AA+Q
Sbjct: 168 VSCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQ 227
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131
GKD+IGAAETGSGKTLAFGLPI+QRLL+EREK GK+ KGEEA+KYA G+LRALIITP
Sbjct: 228 GKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITP 287
Query: 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191
TRELALQVT+HL+ AK ++V+VVPIVGGM +EKQER LK +PE+VV TPGRLWELMS G
Sbjct: 288 TRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAG 347
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251
EKHLVELH+LSFFVLDEADRM+E GHFRELQSI+D+LP+T+ NEG+++ ++ TV ++
Sbjct: 348 EKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNV 407
Query: 252 QRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG-LNSIETLSERAGMRANVAIVDL 310
+KKRQT VFSATIALS+DFRKKLK GS K KQS +G +NSIE LSERAGMR NVAI+DL
Sbjct: 408 PKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDL 467
Query: 311 TNVSVLANKLEESFIE 326
T S+LA K+EESFI+
Sbjct: 468 TTTSILAPKIEESFIK 483
>gi|15450790|gb|AAK96666.1| ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 797
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/316 (71%), Positives = 265/316 (83%), Gaps = 1/316 (0%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
VS DD EE V E EI EF AW+ +RLHPLLMKSIYRL FKEPT IQKAC AA+Q
Sbjct: 168 VSCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQ 227
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131
GKD+IGAAETGSGKTLAFGLPI+QRLL+EREK GK+ KGEEA+KYA G+LRALIITP
Sbjct: 228 GKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITP 287
Query: 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191
TRELALQVT+HL+ AK ++V+VVPIVGGM +EKQER LK +PE+VV TPGRLWELMS G
Sbjct: 288 TRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAG 347
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251
EKHLVELH+LSFFVLDEADRM+E GHFRELQSI+D+LP+T+ NEG+++ ++ TV ++
Sbjct: 348 EKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNV 407
Query: 252 QRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG-LNSIETLSERAGMRANVAIVDL 310
+KKRQT VFSATIALS+DFRKKLK GS K KQS +G +NSIE LSERAGMR NVAI+DL
Sbjct: 408 PKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDL 467
Query: 311 TNVSVLANKLEESFIE 326
T S+LA K+EESFI+
Sbjct: 468 TTTSILAPKIEESFIK 483
>gi|326526415|dbj|BAJ97224.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 872
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/296 (69%), Positives = 243/296 (82%), Gaps = 1/296 (0%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E AW ELRLHPLL+K+++RLGF EPTPIQKACIPA AHQGKD+IGAAETGSGKTLAFGL
Sbjct: 236 ELYAWLELRLHPLLIKAMHRLGFNEPTPIQKACIPAGAHQGKDVIGAAETGSGKTLAFGL 295
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
PI+QRLLEEREK ++ E +EAE + G LRALI+TPTRELA QV DHLKE AK +
Sbjct: 296 PILQRLLEEREKTTRLHVEDEKEAEGSSTGGPLRALILTPTRELAKQVCDHLKEAAKFLG 355
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+ VVPIVGG+S EKQERLLK +PE+VVGTPGRLWELMS G +HLVELH+LSFFVLDEADR
Sbjct: 356 IHVVPIVGGLSMEKQERLLKKKPEIVVGTPGRLWELMSSGNQHLVELHSLSFFVLDEADR 415
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
MIE GHF+E+QSII+MLP++N S+E + T +C TV++LQ KKRQT VFSAT+ALSA+F
Sbjct: 416 MIERGHFKEVQSIIEMLPLSNSSDEQTVKATSSCETVANLQIKKRQTFVFSATLALSANF 475
Query: 272 RKKLKHG-SLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
RKKLK G S + L+SIE LS++AGM+ N IVDLTN S+L KLEESFIE
Sbjct: 476 RKKLKRGLSTSKASTAEDLSSIEELSKQAGMKPNAEIVDLTNASILPEKLEESFIE 531
>gi|357167963|ref|XP_003581416.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like
[Brachypodium distachyon]
Length = 872
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/296 (69%), Positives = 242/296 (81%), Gaps = 1/296 (0%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
EF AW ELRLHPLL+K+++RLGFKEPTPIQKAC PA AHQGKD+IGAAETGSGKTLAFGL
Sbjct: 236 EFYAWLELRLHPLLVKAMHRLGFKEPTPIQKACFPAGAHQGKDVIGAAETGSGKTLAFGL 295
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
PI+QRLLEEREKA ++ E + E+ + G LRALI+TPTRELA QV DHLKE +K +
Sbjct: 296 PILQRLLEEREKATRLNVEDKKAMEESSTGGPLRALILTPTRELAKQVCDHLKEASKFLG 355
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+ VVPIVGG+S EKQERLLK +PE+VVGTPGRLWELMS G +HLVELH+LSFFVLDEADR
Sbjct: 356 IHVVPIVGGLSMEKQERLLKKKPEIVVGTPGRLWELMSTGNQHLVELHSLSFFVLDEADR 415
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
MIE GHF+EL SII+MLP++N S+E T +C TV +LQ KKRQT VFSAT+ALSA+F
Sbjct: 416 MIERGHFKELHSIIEMLPLSNSSDEQAVRATPSCETVLNLQIKKRQTFVFSATLALSANF 475
Query: 272 RKKLKHGSLKLKQSV-NGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
R KLK G K S+ + L+SIE LS++AGM+ N IVDLTN S+L KLEESFIE
Sbjct: 476 RSKLKRGLSTSKASMADNLSSIEALSKQAGMKPNAEIVDLTNASILPEKLEESFIE 531
>gi|242076434|ref|XP_002448153.1| hypothetical protein SORBIDRAFT_06g022240 [Sorghum bicolor]
gi|241939336|gb|EES12481.1| hypothetical protein SORBIDRAFT_06g022240 [Sorghum bicolor]
Length = 807
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/311 (66%), Positives = 250/311 (80%), Gaps = 7/311 (2%)
Query: 18 DAEEELV-SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
D ++EL+ E ++S W ELRLHPLL+K++ RLGFKEPTPIQK+C PAAAHQGKD+I
Sbjct: 200 DKDDELILGEDDVSE----WRELRLHPLLLKAMRRLGFKEPTPIQKSCFPAAAHQGKDVI 255
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
GAAETGSGKTLAFGLPI+QRLLEEREKA ++ +E G++ ++ + LRALI+TPTRELA
Sbjct: 256 GAAETGSGKTLAFGLPILQRLLEEREKAARLHQE-GDKMDERSGGSPLRALILTPTRELA 314
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
QV DHLK+ AK + + VVPIVGG+S EKQERLLK +PE+VVGTPGRLWE MS +HLV
Sbjct: 315 KQVCDHLKDAAKFLGIHVVPIVGGLSMEKQERLLKKKPEIVVGTPGRLWEHMSMNNQHLV 374
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
ELH+LSFFVLDEADRMIE GHFRELQSII+MLP+TNGS+E ++ C TV +LQ KKR
Sbjct: 375 ELHSLSFFVLDEADRMIERGHFRELQSIIEMLPLTNGSDEQSAKTMPNCETVPNLQIKKR 434
Query: 257 QTLVFSATIALSADFRKKLKHGSLKLKQSV-NGLNSIETLSERAGMRANVAIVDLTNVSV 315
QT VFSAT+ALS++FRKKLK G K S + ++SIE LS++AGM+ N IVDLT S+
Sbjct: 435 QTFVFSATLALSSNFRKKLKRGLSTSKASTPDDVSSIEALSKQAGMKPNAEIVDLTKASI 494
Query: 316 LANKLEESFIE 326
L KLEESFIE
Sbjct: 495 LPEKLEESFIE 505
>gi|414586362|tpg|DAA36933.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 842
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/311 (65%), Positives = 251/311 (80%), Gaps = 6/311 (1%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
++ +E ++ E ++S AW ELRLHPLL+K++ RLGFKEPTPIQK+C PAAAH+GKD+I
Sbjct: 196 NEDDELILGEDDVS----AWRELRLHPLLLKAMRRLGFKEPTPIQKSCFPAAAHRGKDVI 251
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
GAAETGSGKTLAFGLP++QRLLEEREKA + L+++ E+ E+ + LRALI+TPTRELA
Sbjct: 252 GAAETGSGKTLAFGLPVLQRLLEEREKATR-LQQEDEKMEERSCGSPLRALILTPTRELA 310
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
QV DHLK+VAK + + VVPIVGG+S EKQERLLK +PE+VVGTPGRLWE MS +HLV
Sbjct: 311 KQVCDHLKDVAKFLGIHVVPIVGGLSMEKQERLLKKKPEIVVGTPGRLWEHMSMNNQHLV 370
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
ELH+LSFF+LDEADRMIE GHFRELQSII+MLP+TNGS+E + C TV LQ KKR
Sbjct: 371 ELHSLSFFILDEADRMIERGHFRELQSIIEMLPLTNGSDEQAARTMPNCETVPILQIKKR 430
Query: 257 QTLVFSATIALSADFRKKLKHGSLKLKQSV-NGLNSIETLSERAGMRANVAIVDLTNVSV 315
QT VFSAT+ALS++FRKKLK G K S + ++SIE LS++AGM++N IVDLT S+
Sbjct: 431 QTFVFSATLALSSNFRKKLKRGLSTSKASTPDDVSSIEALSKQAGMKSNAEIVDLTKASI 490
Query: 316 LANKLEESFIE 326
L KLEESFIE
Sbjct: 491 LPEKLEESFIE 501
>gi|115459372|ref|NP_001053286.1| Os04g0510400 [Oryza sativa Japonica Group]
gi|158513183|sp|A2XVF7.2|RH13_ORYSI RecName: Full=DEAD-box ATP-dependent RNA helicase 13
gi|158513708|sp|A3AVH5.2|RH13_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 13
gi|32488303|emb|CAE03369.1| OSJNBb0065L13.12 [Oryza sativa Japonica Group]
gi|113564857|dbj|BAF15200.1| Os04g0510400 [Oryza sativa Japonica Group]
gi|116311068|emb|CAH67998.1| OSIGBa0157K09-H0214G12.9 [Oryza sativa Indica Group]
Length = 832
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/296 (68%), Positives = 239/296 (80%), Gaps = 1/296 (0%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E AW ELRLHPLL+ ++ RLGFKEPTPIQKAC PAAAHQGKD+IGAAETGSGKTLAFGL
Sbjct: 196 EVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGL 255
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
PI+QRLLEE+EKA ++ E ++ + + LRALI+TPTRELA QV DHLKE AK +
Sbjct: 256 PILQRLLEEQEKAMRLSREDESTQDENSRESPLRALILTPTRELAKQVCDHLKEAAKFLR 315
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
++VVPIVGG+S EKQERLLK +PE+VVGTPGRLWELMS G +HL++LH+LSFFVLDEADR
Sbjct: 316 IQVVPIVGGLSMEKQERLLKRKPEIVVGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADR 375
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
MIE GHF ELQSII+MLP+TNGS+E T +C TV LQ KKRQT VFSAT+ALSA+F
Sbjct: 376 MIERGHFHELQSIIEMLPVTNGSDEQTVGTTPSCETVPILQIKKRQTFVFSATLALSANF 435
Query: 272 RKKLKHGSLKLKQSVN-GLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
RKKLK G + K S + L+SIE LS++A M+ N IVDLT S+L KLEESFIE
Sbjct: 436 RKKLKRGLVTAKASASTDLSSIEALSKQARMKPNAEIVDLTKASILPEKLEESFIE 491
>gi|218195193|gb|EEC77620.1| hypothetical protein OsI_16604 [Oryza sativa Indica Group]
Length = 776
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/296 (68%), Positives = 239/296 (80%), Gaps = 1/296 (0%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E AW ELRLHPLL+ ++ RLGFKEPTPIQKAC PAAAHQGKD+IGAAETGSGKTLAFGL
Sbjct: 140 EVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGL 199
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
PI+QRLLEE+EKA ++ E ++ + + LRALI+TPTRELA QV DHLKE AK +
Sbjct: 200 PILQRLLEEQEKAMRLSREDESTQDENSRESPLRALILTPTRELAKQVCDHLKEAAKFLR 259
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
++VVPIVGG+S EKQERLLK +PE+VVGTPGRLWELMS G +HL++LH+LSFFVLDEADR
Sbjct: 260 IQVVPIVGGLSMEKQERLLKRKPEIVVGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADR 319
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
MIE GHF ELQSII+MLP+TNGS+E T +C TV LQ KKRQT VFSAT+ALSA+F
Sbjct: 320 MIERGHFHELQSIIEMLPVTNGSDEQTVGTTPSCETVPILQIKKRQTFVFSATLALSANF 379
Query: 272 RKKLKHGSLKLKQSVN-GLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
RKKLK G + K S + L+SIE LS++A M+ N IVDLT S+L KLEESFIE
Sbjct: 380 RKKLKRGLVTAKASASTDLSSIEALSKQARMKPNAEIVDLTKASILPEKLEESFIE 435
>gi|222629189|gb|EEE61321.1| hypothetical protein OsJ_15428 [Oryza sativa Japonica Group]
Length = 776
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/296 (68%), Positives = 239/296 (80%), Gaps = 1/296 (0%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E AW ELRLHPLL+ ++ RLGFKEPTPIQKAC PAAAHQGKD+IGAAETGSGKTLAFGL
Sbjct: 140 EVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGL 199
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
PI+QRLLEE+EKA ++ E ++ + + LRALI+TPTRELA QV DHLKE AK +
Sbjct: 200 PILQRLLEEQEKAMRLSREDESTQDENSRESPLRALILTPTRELAKQVCDHLKEAAKFLR 259
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
++VVPIVGG+S EKQERLLK +PE+VVGTPGRLWELMS G +HL++LH+LSFFVLDEADR
Sbjct: 260 IQVVPIVGGLSMEKQERLLKRKPEIVVGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADR 319
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
MIE GHF ELQSII+MLP+TNGS+E T +C TV LQ KKRQT VFSAT+ALSA+F
Sbjct: 320 MIERGHFHELQSIIEMLPVTNGSDEQTVGTTPSCETVPILQIKKRQTFVFSATLALSANF 379
Query: 272 RKKLKHGSLKLKQSVN-GLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
RKKLK G + K S + L+SIE LS++A M+ N IVDLT S+L KLEESFIE
Sbjct: 380 RKKLKRGLVTAKASASTDLSSIEALSKQARMKPNAEIVDLTKASILPEKLEESFIE 435
>gi|293332967|ref|NP_001169277.1| uncharacterized protein LOC100383140 [Zea mays]
gi|224028341|gb|ACN33246.1| unknown [Zea mays]
Length = 842
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/311 (65%), Positives = 250/311 (80%), Gaps = 6/311 (1%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
++ +E ++ E ++S AW ELRLHPLL+K++ RLGFKEPTPIQK+C PAAAH+GKD+I
Sbjct: 196 NEDDELILGEDDVS----AWRELRLHPLLLKAMRRLGFKEPTPIQKSCFPAAAHRGKDVI 251
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
GAAETGSGKTLAFGLP++QRLLEEREKA + L+++ E+ E+ + LRALI+TPTRELA
Sbjct: 252 GAAETGSGKTLAFGLPVLQRLLEEREKATR-LQQEDEKMEERSCGSPLRALILTPTRELA 310
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
QV DHLK+VAK + + VVPIVGG+S EKQERLLK +PE+VVGTPGRLWE MS +HLV
Sbjct: 311 KQVCDHLKDVAKFLGIHVVPIVGGLSMEKQERLLKKKPEIVVGTPGRLWEHMSMNNQHLV 370
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
ELH+LSFF+LDEADRMIE GHFRELQSII+MLP+TNGS E + C TV LQ KKR
Sbjct: 371 ELHSLSFFILDEADRMIERGHFRELQSIIEMLPLTNGSGEQAARTMPNCETVPILQIKKR 430
Query: 257 QTLVFSATIALSADFRKKLKHGSLKLKQSV-NGLNSIETLSERAGMRANVAIVDLTNVSV 315
QT VFSAT+ALS++FRKKLK G K S + ++SIE LS++AGM++N IVDLT S+
Sbjct: 431 QTFVFSATLALSSNFRKKLKRGLSTSKASTPDDVSSIEALSKQAGMKSNAEIVDLTKASI 490
Query: 316 LANKLEESFIE 326
L KLEESFIE
Sbjct: 491 LPEKLEESFIE 501
>gi|302781030|ref|XP_002972289.1| hypothetical protein SELMODRAFT_97519 [Selaginella moellendorffii]
gi|300159756|gb|EFJ26375.1| hypothetical protein SELMODRAFT_97519 [Selaginella moellendorffii]
Length = 524
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 172/291 (59%), Positives = 213/291 (73%), Gaps = 14/291 (4%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
WNELRLHP L+ ++ LGF PTPIQKACIPAAAH+GKD+IGAAETGSGKTLAFG+PI+Q
Sbjct: 1 WNELRLHPSLLTALSTLGFTTPTPIQKACIPAAAHKGKDVIGAAETGSGKTLAFGIPILQ 60
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RLL+ER+K +L + A LRALI+TPTRELALQ+ DH++ VAK +++V
Sbjct: 61 RLLDERDK---LLRQNN-----VASDSPLRALIVTPTRELALQICDHIRAVAKFTDIKVA 112
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PIVGG+ST+KQERLLK RP +VVGTPGRLWELMS GE HLV+L +SFF+LDEADRMIE
Sbjct: 113 PIVGGISTQKQERLLKRRPAIVVGTPGRLWELMSSGESHLVQLQEISFFILDEADRMIEK 172
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275
GHF+EL+SIID+LP E ++ +K+RQTLVFSAT+ L DF+KKL
Sbjct: 173 GHFQELESIIDLLPKHGEPREDLDPADNVFLSA----KKRRQTLVFSATLTLPPDFKKKL 228
Query: 276 KHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
K K+S +S+ LSERAG+ +VDLT+ +V+A KL ES IE
Sbjct: 229 KKSYGARKKSEQ--HSLSLLSERAGLSDTAEVVDLTSKNVVAEKLTESVIE 277
>gi|168023770|ref|XP_001764410.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684274|gb|EDQ70677.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 741
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 174/304 (57%), Positives = 219/304 (72%), Gaps = 7/304 (2%)
Query: 26 EAEISTEFD--AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
EA+ E D AW +LRL+PLLM+++ +L F +PT IQ+ CI AAA+QGKD+IGAAETGS
Sbjct: 96 EADDIEEIDMSAWAQLRLNPLLMRALMKLKFSKPTHIQEKCIAAAAYQGKDVIGAAETGS 155
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKTLAFGLPI+QRLL++ EK + + ++A K G LRALI+TPTRELALQV DHL
Sbjct: 156 GKTLAFGLPILQRLLDDHEKIQR--KSGFDKASKKQSGGPLRALIVTPTRELALQVCDHL 213
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
+ A+ N VVPIVGGM+ +KQ+RLL+ +P++VVGTPGRLWELMS GE HL++L LSF
Sbjct: 214 RAAAQFTNFNVVPIVGGMALQKQQRLLRYQPQIVVGTPGRLWELMSAGEAHLLDLAQLSF 273
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
FVLDEADRM+E GHF+ELQSI+DMLP T + E + + + KKRQTLVFSA
Sbjct: 274 FVLDEADRMVERGHFKELQSIMDMLPKTGPEDTTMKEDFTETIVIEPV--KKRQTLVFSA 331
Query: 264 TIALSADFRKKLKHGSLKLKQ-SVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEE 322
T++L F+KKLK G K S S+ +L +RA MR N I+DLT VLA KLEE
Sbjct: 332 TLSLPPGFKKKLKRGFFNDKSTSKKNEYSVASLIQRAAMRDNAVIIDLTTKDVLARKLEE 391
Query: 323 SFIE 326
S I+
Sbjct: 392 SVIQ 395
>gi|302804899|ref|XP_002984201.1| hypothetical protein SELMODRAFT_119748 [Selaginella moellendorffii]
gi|300148050|gb|EFJ14711.1| hypothetical protein SELMODRAFT_119748 [Selaginella moellendorffii]
Length = 521
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 174/292 (59%), Positives = 215/292 (73%), Gaps = 15/292 (5%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
WNELRLHP L++++ LGF PTPIQKACIPAAAH+GKD+IGAAETGSGKTLAFG+PI+Q
Sbjct: 1 WNELRLHPSLLRALSILGFTTPTPIQKACIPAAAHKGKDVIGAAETGSGKTLAFGIPILQ 60
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV-TDHLKEVAKGINVRV 154
RLL+ER+K +L + A LRALI+TPTRELALQV DH++ VAK +++V
Sbjct: 61 RLLDERDK---LLRQNN-----VASDSPLRALIVTPTRELALQVICDHIRAVAKFTDIKV 112
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
PIVGG+ST+KQERLLK RP +VVGTPGRLWELMS GE HLV+L +SFF+LDEADRMIE
Sbjct: 113 APIVGGISTQKQERLLKRRPAIVVGTPGRLWELMSSGESHLVQLQEISFFILDEADRMIE 172
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274
GHF+EL+SIID+LP S E ++ +K+RQTLVFSAT+ L DF+KK
Sbjct: 173 KGHFQELESIIDLLPKHGESREDLDPADNVFLSA----KKRRQTLVFSATLTLPPDFKKK 228
Query: 275 LKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
LK K+S +S+ LSERAG+ +VDLT+ +V+A KL ES IE
Sbjct: 229 LKKSYGARKKSEQ--HSLSLLSERAGLSDTAEVVDLTSKNVVAEKLTESVIE 278
>gi|412987724|emb|CCO20559.1| predicted protein [Bathycoccus prasinos]
Length = 951
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/277 (44%), Positives = 165/277 (59%), Gaps = 37/277 (13%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW + LHPLL+K+I +L F PTPIQ+ + A DI+GAAETGSGKTLAFGLPI+
Sbjct: 223 AWAQYDLHPLLLKAIRKLRFTSPTPIQEKVLHPAIKGRMDIVGAAETGSGKTLAFGLPIL 282
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
QRL++++E+ E EE K HLRALI+TPTRELALQV L +VA +++
Sbjct: 283 QRLMQDKEEEKWYEEYADEEKPGKGKK-HLRALIVTPTRELALQVAKMLADVAIYTGIQI 341
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
IVGGMS +KQER+LK +PE++V TPGRLWEL+ G+KHL L L+F LDEADRM+E
Sbjct: 342 AAIVGGMSKQKQERVLKKQPEIIVATPGRLWELIRDGDKHLTSLERLTFLTLDEADRMVE 401
Query: 215 NGHFRELQSIIDMLP-----------------------MTNGSNEGQSEQ---------- 241
GHF+EL+S+I +P T SN+ ++++
Sbjct: 402 RGHFKELESVIKSIPEPPETRRIARSAKLTKRKQPMMAATKVSNDSKTKKGEEEEENEEK 461
Query: 242 ---TQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275
+ + + RQT VFSAT+ + + + KL
Sbjct: 462 NDEESEPAADNRIMARDRQTFVFSATLTVPDEVKYKL 498
>gi|330797646|ref|XP_003286870.1| hypothetical protein DICPUDRAFT_150880 [Dictyostelium purpureum]
gi|325083172|gb|EGC36632.1| hypothetical protein DICPUDRAFT_150880 [Dictyostelium purpureum]
Length = 903
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 152/231 (65%), Gaps = 19/231 (8%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
+ +E + + W L L PL++K + LGF++PT IQ A +P A G DIIGAA+TG
Sbjct: 237 ISTEEQNQLDMSEWTALNLDPLIIKGLRSLGFEKPTEIQSAVLPVAISNGYDIIGAAQTG 296
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG-------------------H 123
SGKTLAFG+P++QR+L+ K G+ +E++GE +K +
Sbjct: 297 SGKTLAFGIPMVQRILQHLRKHGQSVEKEGETRDKQIEEEGDEEEEEEEESTGRSEEHRK 356
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
L +L+I PTRELA+QVT+H+K + N++VV IVGG++ ++Q+R+L RPE+VV TPGR
Sbjct: 357 LYSLVICPTRELAIQVTNHIKSIIAFTNLKVVSIVGGLAQQRQQRILTKRPEIVVATPGR 416
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGS 234
LWEL++ G KHL+EL++L +DEADRM+E GHF EL++I+ LP G+
Sbjct: 417 LWELITEGHKHLIELNSLLCLGIDEADRMVEQGHFAELENILKTLPTFKGA 467
>gi|346471193|gb|AEO35441.1| hypothetical protein [Amblyomma maculatum]
Length = 684
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 184/312 (58%), Gaps = 27/312 (8%)
Query: 14 NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
+G DD+ + V + + AW + +++++ L F EPT IQ +PAA
Sbjct: 97 DGTDDSSPD-VPKVSRCDDMSAWLNCYVPEQVLRALAELKFTEPTEIQAQTLPAAIRDHM 155
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133
DI+GAAETGSGKTLAFG+P++ ++E + L + E A + P L+AL++TPTR
Sbjct: 156 DIMGAAETGSGKTLAFGIPLLHHIMERK------LRQPEECASQAMP---LQALVLTPTR 206
Query: 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193
ELA+QVT HL++VAK NVR+V ++GG+S EKQ RLLK +PE+VV TPGRLWEL+ G
Sbjct: 207 ELAIQVTRHLQDVAKYTNVRIVNVIGGLSAEKQLRLLKRKPEIVVATPGRLWELVDQGAP 266
Query: 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQR 253
H+ ++ + + V+DEADRM+E GHF +L ++++ M S EG ++
Sbjct: 267 HVSDVSKVRYLVIDEADRMVEKGHFEDLTRLLEV--MNAPSEEGA-------------EK 311
Query: 254 KKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNV 313
++RQ VFSAT+ + D K++K+ K K + +E L G+ + +VDLT
Sbjct: 312 RRRQNFVFSATLTMVHDMPKRMKNKHKKHK--LTEKEKVEELMCTIGISSKPKVVDLTRK 369
Query: 314 SVLANKLEESFI 325
A L ES I
Sbjct: 370 LGTAETLCESRI 381
>gi|3776003|emb|CAA09204.1| RNA helicase [Arabidopsis thaliana]
Length = 451
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 109/153 (71%), Positives = 131/153 (85%), Gaps = 1/153 (0%)
Query: 175 ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGS 234
E+VV TPGRLWELMS GEKHLVELH+LSFFVLDEADRM+E GHFRELQSI+D+LP+T+
Sbjct: 1 EIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKP 60
Query: 235 NEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG-LNSIE 293
NEG+++ ++ TV ++ +KKRQT VFSATIALS+DFRKKLK GS K KQS +G +NSIE
Sbjct: 61 NEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIE 120
Query: 294 TLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
LSERAGMR NVAI+DLT S+LA K+EESFI+
Sbjct: 121 VLSERAGMRDNVAIIDLTTTSILAPKIEESFIK 153
>gi|427788943|gb|JAA59923.1| Putative gamete proteinration [Rhipicephalus pulchellus]
Length = 691
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 176/296 (59%), Gaps = 26/296 (8%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
S + AW + +++++ L F EPT IQ +PAA DI+GAAETGSGKTLAF
Sbjct: 116 SPDMSAWLNCHVPEPVLRALAELNFTEPTEIQAQTLPAAIRDHLDIMGAAETGSGKTLAF 175
Query: 90 GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 149
G+P++ ++E + + E K P L+AL++TPTRELA+QVT H+++VAK
Sbjct: 176 GIPLLHHIMERKSRLS------AEGDTKAMP---LQALVLTPTRELAIQVTRHIQDVAKY 226
Query: 150 INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209
NVR+V +VGG+S EKQ RLLK +PE+VV TPGRLWEL+ G H+ ++ + + V+DEA
Sbjct: 227 TNVRIVNVVGGLSAEKQLRLLKRKPEIVVATPGRLWELVDQGAPHVSDVSKVRYLVIDEA 286
Query: 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269
DRM+E GHF +L ++D+ M S +G+ ++++RQ VFSAT+ +
Sbjct: 287 DRMVEKGHFEDLTRLLDI--MNAPSEDGE-------------EKRRRQNFVFSATLTMVH 331
Query: 270 DFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
D ++LK+ K K S +E L G+ + +VDLT A L ES I
Sbjct: 332 DLPRRLKNKPKKRKLSEK--EKVEELMHTIGISSKPKVVDLTRKLGTAELLCESRI 385
>gi|340374409|ref|XP_003385730.1| PREDICTED: hypothetical protein LOC100639442 [Amphimedon
queenslandica]
Length = 1012
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/293 (43%), Positives = 169/293 (57%), Gaps = 46/293 (15%)
Query: 34 DAWNELRLHPLLMKSIY-RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
+AW+ L LH +++S+ RLGF PT IQ+ IP A + DIIGAAETGSGKTLAFGLP
Sbjct: 563 EAWSSLGLHDTIVRSLVDRLGFSTPTEIQQKAIPPAINGKHDIIGAAETGSGKTLAFGLP 622
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
++ +L R++ L ALI+ PTRELALQV +H+K A N+
Sbjct: 623 VLNYILTNRQR--------------------LVALILMPTRELALQVVEHIKAAAYYTNI 662
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+V +VGGMS+EKQ+RLLK PE+VVGTPGRLW++M HL L F ++DEADRM
Sbjct: 663 KVCAVVGGMSSEKQDRLLKLCPEIVVGTPGRLWQMMKEECPHLNNFSQLRFLIIDEADRM 722
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272
IE GHFREL I++ L S + K QT+VFSAT+ L R
Sbjct: 723 IEQGHFRELTLILERLS-------------------SQVLSDKYQTMVFSATLTLP---R 760
Query: 273 KKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
+K+ K K ++G SIE + +AG+ +DLT+ ++EES I
Sbjct: 761 RKIGR---KRKSKMSGEESIENVILKAGLSETAVTIDLTHKHGTVERIEESKI 810
>gi|66812546|ref|XP_640452.1| hypothetical protein DDB_G0281841 [Dictyostelium discoideum AX4]
gi|74997024|sp|Q54TD7.1|DDX24_DICDI RecName: Full=ATP-dependent RNA helicase ddx24; AltName: Full=DEAD
box protein 24
gi|60468476|gb|EAL66480.1| hypothetical protein DDB_G0281841 [Dictyostelium discoideum AX4]
Length = 940
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/373 (34%), Positives = 190/373 (50%), Gaps = 72/373 (19%)
Query: 19 AEEELVS-EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
+E++ +S E + + WN L PL++K + LGF +PT IQ + IP A G D+IG
Sbjct: 278 SEQKTISKEEQDQLDMSEWNSYNLDPLILKGLRSLGFSKPTEIQSSVIPVAVSSGYDVIG 337
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAE--------------------- 116
AA+TGSGKTLAFG+P++QR+L+ K G+ +E K + +
Sbjct: 338 AAQTGSGKTLAFGIPMVQRILQHLRKHGQNVENKANKQQNDNDDENEDVEEEEEEEEEEG 397
Query: 117 KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPEL 176
+ L +L+I PTRELA+QVT+H+K + N++V+ IVGGM++++Q+R+L RPE+
Sbjct: 398 RSKEYRKLFSLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMASQRQQRVLSKRPEI 457
Query: 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP------- 229
VV TPGRLWEL++ G +HLVEL +L +DEADRM+E GHF EL+SI+ LP
Sbjct: 458 VVATPGRLWELITEGHQHLVELESLLCLGIDEADRMVEQGHFAELESILKTLPIHRTAMS 517
Query: 230 ----------------------------MTNGSNEGQSEQTQTCVTVSSLQRK------- 254
M G + +Q Q +
Sbjct: 518 KKERLKKKETEEKRNKRRKVDKLNDKGEMIKGDQDDMDDQIPDEEMEELEQEEQNHLTTT 577
Query: 255 -KRQTLVFSAT-IALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTN 312
KRQT VFSAT + + D K+ L IE L E+ + + ++D+T
Sbjct: 578 HKRQTFVFSATLVNIPGD------GAPTSQKKKYRKLTPIENLIEKVRFQRDYKLIDVTQ 631
Query: 313 VSVLANKLEESFI 325
+ A L E+ I
Sbjct: 632 KRLTAKNLLETKI 644
>gi|145353253|ref|XP_001420934.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581170|gb|ABO99227.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 394
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 129/199 (64%), Gaps = 19/199 (9%)
Query: 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
+ AW E LHPL+M++I GF PTPIQ+ C+ A DIIGAA+TGSGKTLAF
Sbjct: 14 CDVSAWFEFDLHPLIMRAIQDCGFTTPTPIQRECLLPATKGRCDIIGAAQTGSGKTLAFA 73
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150
LPI+QRLL + G + LRALI+ PTRELALQV ++ VA
Sbjct: 74 LPILQRLLSQ-----------GIDV--------LRALIVAPTRELALQVCAMMRAVAVYT 114
Query: 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210
+ V P+VGGMS EKQERLL +P ++V TPGR+W+ M G +HL EL LSFFVLDEAD
Sbjct: 115 KIDVCPVVGGMSKEKQERLLNRKPAVIVATPGRMWDTMQSGHEHLTELSALSFFVLDEAD 174
Query: 211 RMIENGHFRELQSIIDMLP 229
RM+E GHF EL SII +P
Sbjct: 175 RMVERGHFSELTSIIQNIP 193
>gi|156404211|ref|XP_001640301.1| predicted protein [Nematostella vectensis]
gi|156227434|gb|EDO48238.1| predicted protein [Nematostella vectensis]
Length = 566
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/242 (46%), Positives = 154/242 (63%), Gaps = 5/242 (2%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W L + P +++++ GF +PTPIQ IP A +DIIGAAETGSGKTLAFG+PI+Q
Sbjct: 4 WEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQ 63
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ E K K + ++ +G+ L ALI+ PTRELALQV DHL + AK +V+V
Sbjct: 64 HI--EAYKKRKAEQSPSDKESDLESQGYPLLALIMAPTRELALQVKDHLVKAAKYTSVKV 121
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
IVGGM+ KQ+RLLK RPE+VV TPGRLWEL+S E+H+ + L + V+DEADRM+E
Sbjct: 122 AAIVGGMAAPKQQRLLKQRPEIVVATPGRLWELISQQEEHVSNIQLLRYLVIDEADRMVE 181
Query: 215 NGHFRELQSIIDMLPMTNGSN-EGQSEQTQTCVTVSSLQRKKR-QTLVFSATIALSADFR 272
GH+ EL SI++++ + N E E + S K R Q +FSAT+ L F+
Sbjct: 182 QGHYEELSSILELIHLKKSGNMEVDQEDAERPSNSSKTPEKARLQKFIFSATLTLPKSFK 241
Query: 273 KK 274
K+
Sbjct: 242 KR 243
>gi|440796416|gb|ELR17525.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 926
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 98/194 (50%), Positives = 137/194 (70%), Gaps = 9/194 (4%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W LHP LM++I F PTPIQ+ + AA + KD++G AETGSGKTLA+GLPI+
Sbjct: 256 SWQHFNLHPTLMEAIKEYKFFSPTPIQEKALTAALREDKDVVGVAETGSGKTLAYGLPIL 315
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+L ++RE+ E G E ++ L+AL++ PTRELA+QV+D LK +AK + V
Sbjct: 316 HKLTKKREQE----ERDGVEKDR-----RLKALLLAPTRELAVQVSDQLKLIAKHTPITV 366
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
VP++GG++ +KQ RLL +PE+VV TPGRLWEL++GG+ L + L F V+DEADRM+E
Sbjct: 367 VPVIGGLAPQKQVRLLSKKPEIVVATPGRLWELINGGDPFLGDCTGLEFLVIDEADRMVE 426
Query: 215 NGHFRELQSIIDML 228
GHFREL+SII ++
Sbjct: 427 TGHFRELKSIITLI 440
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 255 KRQTLVFSATIALSADFRKKL--KHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTN 312
KRQT +FSAT+ +++ R KL K + + +VN L + L G ++DLT
Sbjct: 572 KRQTFIFSATLTIASQGRAKLGPKPSTNSNRAAVNALAQVSKL---VGFEREKKVIDLTT 628
Query: 313 VSVLANKLEESFIE 326
V+ + LEE+ I+
Sbjct: 629 KKVVVSTLEEAVIQ 642
>gi|281207739|gb|EFA81919.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 932
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/353 (36%), Positives = 183/353 (51%), Gaps = 62/353 (17%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AWN+ L PLL+K + LG+ EPT IQ IPAA G DIIGAAETGSGKTLAFG+
Sbjct: 310 DISAWNQYDLDPLLVKGLKALGYGEPTEIQSQVIPAALKNGLDIIGAAETGSGKTLAFGI 369
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAE-KYAP----------------------KGHLRALI 128
P++ +L +E++ + K P +GHL +LI
Sbjct: 370 PMLHNILTYLRSINHPVEKQNINVDGKMKPLVEQDDEEEEEEEEEEETATRKQGHLYSLI 429
Query: 129 ITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188
+ PTRELA+QV +HLK ++ + VV +VGGM+ +KQ RLL RPE+VV TPGRLWEL+
Sbjct: 430 MCPTRELAIQVANHLKSISYFTTISVVTVVGGMAAQKQIRLLGRRPEIVVATPGRLWELI 489
Query: 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGS-------------- 234
G +HL++L L F +DEADRM+E GHF E+ SI+ MLP +
Sbjct: 490 QDGNEHLLDLTHLMCFGIDEADRMVEKGHFAEVDSILKMLPKYSSKLQQQREQQAAEEEE 549
Query: 235 ---------------NEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-------LSADFR 272
E + E+ + S L KRQT +FSAT+ L+ D +
Sbjct: 550 DKEEQEEEEDKEDGEVEDEEEKEERSNGFSYLSSFKRQTFIFSATLVGIPNINELNNDGK 609
Query: 273 KKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
K + G+ K K+ + ++ L + + ++D T + A LEE+ I
Sbjct: 610 KPMG-GNRKFKKK--AASPLQELIGKVQFQRRYRLIDCTKSKLTARNLEETKI 659
>gi|198437354|ref|XP_002125842.1| PREDICTED: similar to CG9143 CG9143-PA [Ciona intestinalis]
Length = 719
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 174/319 (54%), Gaps = 47/319 (14%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
+ + AW L + ++K++ L F +P PIQ+ CIP A +DI+GAAETGSGKTLAF
Sbjct: 159 TVDMSAWQNLYVPETVLKALAELRFTKPMPIQEQCIPVAIRDKRDILGAAETGSGKTLAF 218
Query: 90 GLPIMQRLLEEREKAGKMLEE----------------------KGEEAEKYAPKGHLRAL 127
G+P++ L+E+RE+ +LE EE E+ P L AL
Sbjct: 219 GIPLLHHLMEDRER--NLLENTENAEIDEDDEHMSDFEDAEPVSKEEIEETQPTKALPAL 276
Query: 128 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187
++TPTRELA+QV HL +VAK + +VGGM+ +KQ RLL P++V+ TPGRLWEL
Sbjct: 277 VLTPTRELAIQVKKHLTQVAKHTKLWSTVVVGGMAQQKQIRLLNKEPDIVIATPGRLWEL 336
Query: 188 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVT 247
+ G +L +H L + V+DEADRM+E+GHF EL +++++ +
Sbjct: 337 LESGHPYLSTIHKLRYLVIDEADRMLEHGHFEELNKLLEVINLKKS-------------- 382
Query: 248 VSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNS-IETLSERAGMRANVA 306
+ KRQT +FSAT+ + F + + S N ++ + L ++ G+R
Sbjct: 383 -----KTKRQTFIFSATLT-TVHFTP--NRPNFPTQASSNTKDTKLSKLMKKIGVRNKPF 434
Query: 307 IVDLTNVSVLANKLEESFI 325
+ DLT + A KL E+ I
Sbjct: 435 VADLTTKKLTAEKLSEAKI 453
>gi|384498821|gb|EIE89312.1| hypothetical protein RO3G_14023 [Rhizopus delemar RA 99-880]
Length = 808
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 178/313 (56%), Gaps = 26/313 (8%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
P+ + + + + S + AW + L ++ ++ F PTPIQ+ +P A QG+DI
Sbjct: 233 PEPKKRPTIDDVDQSVDVSAWKDFELAQPIVNALKYHKFSSPTPIQEKTLPLAL-QGRDI 291
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135
+G+AETGSGKTLAFG+PI+Q L K L LI+TPTREL
Sbjct: 292 VGSAETGSGKTLAFGIPIVQYLATHE-------------------KEDLSGLILTPTREL 332
Query: 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
A+QV DH+ VA ++R V IVGGMS +KQERLLK +P+++V TPGRLWEL SG ++++
Sbjct: 333 AIQVKDHIANVALFTDIRCVAIVGGMSAQKQERLLKGKPDIIVATPGRLWELFSGNQEYM 392
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQT-QTCVTVSSLQRK 254
L + F VLDEADRM+E GHF EL +I++ L + E+ Q +
Sbjct: 393 DMLKRIKFLVLDEADRMLEKGHFEELTNILNTLSTKRQTTTDWPEEIGQGNRKILPQDLG 452
Query: 255 KRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGM-RANVAIVDLTNV 313
QT +++AT LS D R +K + K K + +++ L R A++D+T+
Sbjct: 453 VHQTFIYTAT--LSKDIRFNVK--AKKRKATAQPTGTMDDLLSRIEFADQEPALIDMTSE 508
Query: 314 SVLANKLEESFIE 326
+++A++L E+ I+
Sbjct: 509 NIVASRLLEAKID 521
>gi|428175672|gb|EKX44561.1| hypothetical protein GUITHDRAFT_109675 [Guillardia theta CCMP2712]
Length = 748
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 181/313 (57%), Gaps = 29/313 (9%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E++ WN + L L+K++ GF++PT IQ+ IPAA + +DI GAAETGSGKTLAF L
Sbjct: 186 EYEEWNCVMLRKCLVKALKEQGFEQPTAIQELVIPAAMAKRQDIFGAAETGSGKTLAFAL 245
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
P++QR+L+ +G +E+ L L+++PTRELA+QV DH+ A+
Sbjct: 246 PMLQRILDSHNFSGIDAKER-----------KLAGLVLSPTRELAIQVRDHIVAAARFTK 294
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
++VV +VGG+S +KQ+R L P +VVGTPGRLWE M G ++L EL+ L V+DEADR
Sbjct: 295 IKVVAVVGGLSMQKQQRQLAMHPHIVVGTPGRLWEQMRLGNEYLRELNMLLCLVIDEADR 354
Query: 212 MIENGHFRELQSIIDMLPMTN--GSNEGQSEQTQTCVTVSSLQRKK-----------RQT 258
M+E GHF+EL++I+++LP + + +S + + ++S Q K RQT
Sbjct: 355 MMETGHFQELENILNLLPDLDPKAKQKRESNEEEEEEEITSFQATKGSKLHAQRHYRRQT 414
Query: 259 LVFSATIALSADFRKKLKHGSLKLKQSVNG-----LNSIETLSERAGMRANVAIVDLTNV 313
++FSAT+ +R K + ++ SIE L +R + I DLT
Sbjct: 415 MIFSATLIKDIQWRSTKKVKRKEKRKQPETSADVRRQSIERLIDRLQLPEEPVIFDLTPS 474
Query: 314 SVLANKLEESFIE 326
++ K+ + +E
Sbjct: 475 GKVSEKIAQYRVE 487
>gi|348531313|ref|XP_003453154.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Oreochromis niloticus]
Length = 847
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 122/345 (35%), Positives = 179/345 (51%), Gaps = 71/345 (20%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
+ + AW +L + P +++++ LGF PTPIQ C+P A DI+GAAETGSGKTLAF
Sbjct: 238 NVDMSAWKDLFVPPPVLRALSSLGFGSPTPIQALCLPPAIRDRMDILGAAETGSGKTLAF 297
Query: 90 GLPIMQRLLE----EREKAGKMLEEKGEEAEKY--------------------------- 118
G+PI+ +LE E K+ + +E+G EA K
Sbjct: 298 GIPIIHTILEWKHNEYTKSAEEDQEEGVEASKENDEDAEDQNQGDSDEDEHSDVEDEQLG 357
Query: 119 --------------APKGH----LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG 160
P G L L++TPTRELA+QV H+ VAK +++ +VGG
Sbjct: 358 CVRVIKNADFDFDEKPAGAQSRPLLGLVLTPTRELAVQVKHHIDAVAKFTDIKTALVVGG 417
Query: 161 MSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 220
M+ +KQ R+LK RPE+++ TPGRLW+L+ HLV L L V+DEADRM+E GHF E
Sbjct: 418 MAQQKQRRVLKRRPEIIIATPGRLWDLIKERHPHLVNLRQLRCLVIDEADRMVERGHFAE 477
Query: 221 LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSL 280
L+++++ML T+ + RQT VFSAT+ + +L
Sbjct: 478 LENLLEMLNTTHFN-------------------PTRQTFVFSATLTMVHSLPTRLLQ--- 515
Query: 281 KLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
K K++++ N +E L E+ G+++ +VDLT L E+ I
Sbjct: 516 KKKKNLDQRNKLEILMEKVGIKSKPKVVDLTRKEATVETLIETQI 560
>gi|308810583|ref|XP_003082600.1| RNA Helicase (ISS) [Ostreococcus tauri]
gi|116061069|emb|CAL56457.1| RNA Helicase (ISS) [Ostreococcus tauri]
Length = 1211
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 170/331 (51%), Gaps = 42/331 (12%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW E LHPL++++I GF PTPIQ+ C+ A DIIGAA+TGSGKTLAF L
Sbjct: 267 DISAWFEFDLHPLILRAIQDCGFTSPTPIQRECLHPATKGRYDIIGAAQTGSGKTLAFAL 326
Query: 92 PIMQRLLEEREKAGKMLEEK---GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
PI+ RLL E G L E + E+ LRALI+ PTRELALQV ++ VA
Sbjct: 327 PILHRLLSE----GIGLPEDYPLKDGKEREVLPDVLRALIVCPTRELALQVCAMMRAVAV 382
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ V P+V + L P ++V TPGRLW+ M G + E LSFFVLDE
Sbjct: 383 YTKIDVCPVVRWYVEREARATLNRMPAIIVATPGRLWDTMQSGHAAVTEFGALSFFVLDE 442
Query: 209 ADRMIENGHFRELQSIIDML---------------------PMTNGSNEGQSEQTQTCVT 247
ADRMI+ GHF+EL SII + P+ N + + +
Sbjct: 443 ADRMIQRGHFKELTSIIQNIPEPPRVKRAGGAAKSKEESDAPVDNFAEDEDDVNRAKALA 502
Query: 248 VSSLQRKKRQTLVFSATIALSADFRKKLKHG----SLKLK----QSVNGLNSIETLSERA 299
+ Q RQT VFSAT+ + R+KLK G S K + Q +G S+E+L E
Sbjct: 503 LRPKQMLDRQTFVFSATLTVPDSVRRKLKKGKAPTSAKPRKGSAQPQSG--SLESLMEAV 560
Query: 300 GMRANVAIVDLTNV----SVLANKLEESFIE 326
V +VDLT + +A+ + ES +E
Sbjct: 561 PFYGRVKMVDLTPIERKGGAVASSIAESALE 591
>gi|198458698|ref|XP_002138576.1| GA24853 [Drosophila pseudoobscura pseudoobscura]
gi|198136429|gb|EDY69134.1| GA24853 [Drosophila pseudoobscura pseudoobscura]
Length = 807
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/338 (36%), Positives = 180/338 (53%), Gaps = 63/338 (18%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
E E AWN L + +++++ GFK PT IQ +PAA H KDI+GAAETGSGKTL
Sbjct: 202 EYKDELSAWNGLGVPSNILRALAEQGFKAPTQIQSMTLPAAIHGKKDILGAAETGSGKTL 261
Query: 88 AFGLPIMQRLLEEREK-------------------------------------AGKMLEE 110
AFG+P++ ++E +++ +G E+
Sbjct: 262 AFGIPMLAGIMELKQRNASSGIRKAPKVKGAPIAPPADDEHELTPPPDELDHVSGASDED 321
Query: 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL 170
E + + L L++TPTRELA+QV +HL AK ++V I GG+S KQER+L
Sbjct: 322 SDAEEREQRKQTPLYGLVLTPTRELAVQVRNHLVSAAKYTGIKVAAIFGGLSVAKQERVL 381
Query: 171 KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230
+ PE+VV TPGRLWEL + G +HL +L LSF V+DE DRM+E GHF EL+S++ +L
Sbjct: 382 RQCPEIVVATPGRLWELFAQGNQHLNKLDDLSFLVIDETDRMVEKGHFEELRSLLKVL-- 439
Query: 231 TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK-----LKQS 285
++E + +Q RQ VFSAT+ L D ++ ++ +KQ+
Sbjct: 440 --NADEQKKQQ--------------RQNFVFSATLTLVHDLPDHMQKRNVGKRPKFVKQT 483
Query: 286 VNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
V+ IE+L E G+ + IVD+T+ A L ES
Sbjct: 484 VD--QKIESLIEELGI-SQPKIVDITSTQQTAQTLTES 518
>gi|195154787|ref|XP_002018294.1| GL17630 [Drosophila persimilis]
gi|194114090|gb|EDW36133.1| GL17630 [Drosophila persimilis]
Length = 807
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 124/338 (36%), Positives = 180/338 (53%), Gaps = 63/338 (18%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
E E AWN L + +++++ GFK PT IQ +PAA H KDI+GAAETGSGKTL
Sbjct: 202 EYEDELSAWNGLGVPSNILRALAEQGFKAPTQIQSMTLPAAIHGKKDILGAAETGSGKTL 261
Query: 88 AFGLPIMQRLLEEREK-------------------------------------AGKMLEE 110
AFG+P++ ++E +++ +G E+
Sbjct: 262 AFGIPMLAGIMELKQRNASSGIRKAPKVKGAPIAPPADDEHELTPPPDELDHVSGASDED 321
Query: 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL 170
E + + L L++TPTRELA+QV +HL AK ++V I GG+S KQER+L
Sbjct: 322 SDAEEREQRKQTPLYGLVLTPTRELAVQVKNHLVSAAKYTGIKVAAIFGGLSVAKQERVL 381
Query: 171 KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230
+ PE+VV TPGRLWEL + G +HL +L LSF V+DE DRM+E GHF EL+S++ +L
Sbjct: 382 RQCPEIVVATPGRLWELFAQGNQHLNKLDDLSFLVIDETDRMVEKGHFEELRSLLKVL-- 439
Query: 231 TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK-----LKQS 285
++E + +Q RQ VFSAT+ L D ++ ++ +KQ+
Sbjct: 440 --NADEQKKQQ--------------RQNFVFSATLTLVHDLPDHMQKRNVGKRPKFVKQT 483
Query: 286 VNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
V+ IE+L E G+ + IVD+T+ A L ES
Sbjct: 484 VD--QKIESLIEELGI-SQPKIVDITSTQQTAQTLTES 518
>gi|242022824|ref|XP_002431838.1| ATP-dependent RNA helicase MAK5, putative [Pediculus humanus
corporis]
gi|212517170|gb|EEB19100.1| ATP-dependent RNA helicase MAK5, putative [Pediculus humanus
corporis]
Length = 543
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 163/288 (56%), Gaps = 25/288 (8%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+WN +H ++ ++Y + EPT IQ C+ A DI+GAAETGSGKTLAFG+PI+
Sbjct: 3 SWNSFGIHEKILYALYDKKYFEPTKIQSRCLGPAICGQMDILGAAETGSGKTLAFGIPIV 62
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+L EK L + E + K +L ALI+TPTRELA+QV +HL ++ K + +
Sbjct: 63 NGILSIMEKE---LNQSIESLKMKNEKNNLYALILTPTRELAVQVRNHLNDICKYTKINI 119
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
IVGG++ EKQER+L RPE++V TPGRLWEL++ HL + L + +DE DRM+E
Sbjct: 120 ALIVGGLAHEKQERILNKRPEIIVATPGRLWELVNDNNIHLSNIKNLRYLAIDETDRMLE 179
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274
GHF EL +++ + + NE ++KKRQ +FSAT+ + D
Sbjct: 180 KGHFTELNDLLERINL----NEN--------------KKKKRQNFLFSATLTVVHDPPSY 221
Query: 275 LKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEE 322
LK K + + ++ L + G+ N IVD+TN V A L E
Sbjct: 222 LKG---KKNKRITPGQKLQDLISKIGI-TNPKIVDITNTHVTAENLSE 265
>gi|167538304|ref|XP_001750817.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770734|gb|EDQ84416.1| predicted protein [Monosiga brevicollis MX1]
Length = 1041
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 131/215 (60%), Gaps = 19/215 (8%)
Query: 20 EEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAA 79
E+ S+ + AW L+L L +++ R GF PTPIQ+A I A +D+I AA
Sbjct: 277 EDVTTSQPLADEDLAAWTVLQLDRELAEAVVRRGFTAPTPIQQAAIVPAVRDYRDVIAAA 336
Query: 80 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ- 138
TGSGKTLAFGLP++Q +L R + L+ LI+TPTRELALQ
Sbjct: 337 PTGSGKTLAFGLPVLQHILNRRARGRST--------------AGLQCLILTPTRELALQQ 382
Query: 139 ----VTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
+ HLK +A ++VRV IVGGM+ KQERLLKA+PE+VVGTPGRLWE++ G H
Sbjct: 383 SLWQIQQHLKPLATPLSVRVTAIVGGMALVKQERLLKAKPEIVVGTPGRLWEIIQSGHVH 442
Query: 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
L +L F VLDEADRM+E GHF EL I+ LP
Sbjct: 443 FAHLDSLRFLVLDEADRMVERGHFAELDKILARLP 477
>gi|384247532|gb|EIE21018.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 460
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/201 (55%), Positives = 135/201 (67%), Gaps = 23/201 (11%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
VS A++S AW L L P ++ +I LGF EPTPIQ+ C+ A +D+IGAA+TGS
Sbjct: 35 VSAADVS----AWEGLGLGPGVLGAIGGLGFGEPTPIQRECLLPAIRDRRDVIGAAQTGS 90
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKTLAFGLPI+Q L+ R K G G LRALI+ PTRELA+QV++HL
Sbjct: 91 GKTLAFGLPILQ--LKGR-KGG----------------GLLRALILAPTRELAMQVSEHL 131
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
+ VAK + V V PIVGG+S KQ RLL RP +VV TPGRLWELM GE HL +L LSF
Sbjct: 132 QAVAKPVGVWVAPIVGGISPPKQARLLGRRPAIVVATPGRLWELMRLGEPHLADLTGLSF 191
Query: 204 FVLDEADRMIENGHFRELQSI 224
VLDEADRM++ GHF+EL I
Sbjct: 192 LVLDEADRMVQQGHFQELTCI 212
>gi|56201305|dbj|BAD72907.1| unnamed protein product [Drosophila simulans]
gi|56201324|dbj|BAD72925.1| unnamed protein product [Drosophila sechellia]
Length = 814
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 188/352 (53%), Gaps = 69/352 (19%)
Query: 17 DDAEEELVS----EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
D+ ELVS EAE + AWN L + +++++ GFK PT IQ +PAA H
Sbjct: 198 DEEAPELVSIPTDEAE---DVSAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGK 254
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREK------------AGKMLEEKGEEAEKYAP 120
KDI+GAAETGSGKTLAFG+P++ ++E +++ G+ E +E E P
Sbjct: 255 KDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPP 314
Query: 121 ------------------------KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
+ L L++TPTRELA+QV +HL AK +RV
Sbjct: 315 PEELDHVSGASDEESDAEEHTQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAA 374
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
I GG++ KQER+L+ P++VV TPGRLWEL + G +HL ++ +SF V+DE DRM+E G
Sbjct: 375 IFGGLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKG 434
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL+S++ +L S+E + Q RQ V+SAT+ L D ++
Sbjct: 435 HFEELRSLLKVL----NSDEQKKHQ--------------RQNFVYSATLTLVHDLPDHMQ 476
Query: 277 HGSLK-----LKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
++ +KQSV+ IE+L E G+ + IVD+T+ A L ES
Sbjct: 477 KRNVGKRPKFVKQSVD--QKIESLIEELGI-SQPKIVDITSSQQTAQTLTES 525
>gi|270010898|gb|EFA07346.1| hypothetical protein TcasGA2_TC015943 [Tribolium castaneum]
Length = 599
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 148/252 (58%), Gaps = 30/252 (11%)
Query: 22 ELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAET 81
E+ + + S + W+ L ++K++ GF EPT IQ +PAA +DI+GAAET
Sbjct: 87 EINEKIQKSDSYLVWSNFGLPDSIIKALVLQGFNEPTLIQSLSLPAAVLGRRDIVGAAET 146
Query: 82 GSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTD 141
GSGKTLAFGLPI+ +L E+ K ++K L AL++TPTRELA+QV D
Sbjct: 147 GSGKTLAFGLPIVAGILNEKSKVVGNSDKK------------LYALVLTPTRELAVQVRD 194
Query: 142 HLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
HLK + K ++ + ++GGM+ KQER+L RPE+VV TPGRLWEL+ G +HL +++ +
Sbjct: 195 HLKAIVKFTDINIAVVLGGMAAVKQERILSKRPEIVVATPGRLWELIQQGNEHLSQINDI 254
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
+ +DE DRM+E GHF EL +I++ L + + K+RQ VF
Sbjct: 255 RYLAIDETDRMLEKGHFEELHNILERL------------------NLDKTRAKQRQNFVF 296
Query: 262 SATIALSADFRK 273
SAT+ L D K
Sbjct: 297 SATLTLVHDLPK 308
>gi|194881539|ref|XP_001974888.1| GG20872 [Drosophila erecta]
gi|190658075|gb|EDV55288.1| GG20872 [Drosophila erecta]
Length = 815
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 187/352 (53%), Gaps = 66/352 (18%)
Query: 17 DDAEEELVSEAEIST----EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
D ++EE IST + AWN L + +++++ GFK PT IQ +PAA H
Sbjct: 196 DSSDEEAPELVPISTGEGEDVSAWNGLGVPASILRALGEQGFKAPTQIQALTLPAAIHGK 255
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREK------------AGKMLEEKGEEAEKYAP 120
KDI+GAAETGSGKTLAFG+P++ ++E +++ G+ E +E E P
Sbjct: 256 KDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPP 315
Query: 121 ------------------------KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
+ L L++TPTRELA+QV +HL AK +RV
Sbjct: 316 PEELDHVSGASDEESDAEEHAQRMQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAA 375
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
I GG++ KQER+L+ P++VV TPGRLWEL + G +HL ++ +SF V+DE DRM+E G
Sbjct: 376 IFGGLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKG 435
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL+S++ +L S+E + Q RQ V+SAT+ L D ++
Sbjct: 436 HFEELRSLLKVL----NSDEQKKHQ--------------RQNFVYSATLTLVHDLPDHMQ 477
Query: 277 HGSLK-----LKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
++ +KQ+V+ IE+L E G+ + IVD+T+ A L ES
Sbjct: 478 KRNVGKRPKFVKQTVD--QKIESLIEELGI-SQPKIVDITSSQQTAQTLTES 526
>gi|320165920|gb|EFW42819.1| ATP-dependent RNA helicase DDX24 [Capsaspora owczarzaki ATCC 30864]
Length = 1137
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 131/210 (62%), Gaps = 8/210 (3%)
Query: 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
T+ WN LH LL+K + G+ PTPIQ+ + +DIIGA+ETGSGKTLAF
Sbjct: 429 TDMSEWNGFGLHELLIKGLATAGYARPTPIQREALLKGLRDYQDIIGASETGSGKTLAFA 488
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAE--------KYAPKGHLRALIITPTRELALQVTDH 142
LPI+Q +L R+K + G++ E K L ALI+TPTRELA Q+ +
Sbjct: 489 LPILQVILNGRDKEAARESQNGDDNEAETDAASKKVFKNRPLSALILTPTRELASQIREQ 548
Query: 143 LKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202
+ +VAK ++ VV ++GG+S EKQ R+L P++VV TPGRLW+ MS G +HL EL L
Sbjct: 549 IVKVAKFTDISVVTVIGGLSAEKQRRVLSYCPDIVVATPGRLWDYMSQGNQHLTELRYLR 608
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTN 232
VLDEADRM+ GHF EL I+ +LP+ N
Sbjct: 609 HLVLDEADRMVATGHFEELTKILAILPVQN 638
>gi|195486926|ref|XP_002091709.1| GE13811 [Drosophila yakuba]
gi|194177810|gb|EDW91421.1| GE13811 [Drosophila yakuba]
Length = 808
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 187/352 (53%), Gaps = 66/352 (18%)
Query: 17 DDAEEELVSEAEIST----EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
D ++EE IST + AWN L + +++++ GFK PT IQ +PAA H
Sbjct: 189 DSSDEEAPELVPISTSEAEDVSAWNGLGVPASILRALGEQGFKAPTQIQALTLPAAIHGK 248
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREK------------AGKMLEEKGEEAEKYAP 120
KDI+GAAETGSGKTLAFG+P++ ++E +++ G+ E +E E P
Sbjct: 249 KDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPP 308
Query: 121 ------------------------KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
+ L L++TPTRELA+QV +HL AK +RV
Sbjct: 309 PEELDHVSGASDEESDAEEQAQRIQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAA 368
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
I GG++ KQER+L+ P++VV TPGRLWEL + G +HL ++ +SF V+DE DRM+E G
Sbjct: 369 IFGGLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKG 428
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL+S++ +L S+E + Q RQ V+SAT+ L D ++
Sbjct: 429 HFEELRSLLKVL----NSDEQKKHQ--------------RQNFVYSATLTLVHDLPDHMQ 470
Query: 277 HGSLK-----LKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
++ +KQ+V+ IE+L E G+ + IVD+T+ A L ES
Sbjct: 471 KRNVGKRPKFVKQTVD--QKIESLIEELGI-SQPKIVDITSSQQTAQTLTES 519
>gi|189239044|ref|XP_969373.2| PREDICTED: similar to CG9143 CG9143-PA [Tribolium castaneum]
Length = 645
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 148/252 (58%), Gaps = 30/252 (11%)
Query: 22 ELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAET 81
E+ + + S + W+ L ++K++ GF EPT IQ +PAA +DI+GAAET
Sbjct: 89 EINEKIQKSDSYLVWSNFGLPDSIIKALVLQGFNEPTLIQSLSLPAAVLGRRDIVGAAET 148
Query: 82 GSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTD 141
GSGKTLAFGLPI+ +L E+ K ++K L AL++TPTRELA+QV D
Sbjct: 149 GSGKTLAFGLPIVAGILNEKSKVVGNSDKK------------LYALVLTPTRELAVQVRD 196
Query: 142 HLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
HLK + K ++ + ++GGM+ KQER+L RPE+VV TPGRLWEL+ G +HL +++ +
Sbjct: 197 HLKAIVKFTDINIAVVLGGMAAVKQERILSKRPEIVVATPGRLWELIQQGNEHLSQINDI 256
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
+ +DE DRM+E GHF EL +I++ L + + K+RQ VF
Sbjct: 257 RYLAIDETDRMLEKGHFEELHNILERL------------------NLDKTRAKQRQNFVF 298
Query: 262 SATIALSADFRK 273
SAT+ L D K
Sbjct: 299 SATLTLVHDLPK 310
>gi|328872649|gb|EGG21016.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 909
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 141/221 (63%), Gaps = 18/221 (8%)
Query: 20 EEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAA 79
++ + EA + + W L PL++K + LG++ PT IQ IPA+ G DIIGAA
Sbjct: 236 QDRIAPEAADTLDMTVWESYNLDPLIIKGLRALGYERPTEIQSQVIPASIQSGNDIIGAA 295
Query: 80 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA-----------EKYAPKGHLRALI 128
ETGSGKTLAFG+P++ +L K L +GE+ +K L AL+
Sbjct: 296 ETGSGKTLAFGIPMVNTIL-------KYLRAQGEDVTRSTLPQVGLLKKDNSHKKLLALV 348
Query: 129 ITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188
+ PTRELA+QVT+HL+ VA ++R++ +VGG+S +KQ+R L ++PE+VV TPGRLWEL+
Sbjct: 349 LCPTRELAIQVTNHLRTVALETSLRIISVVGGLSQKKQDRELNSKPEIVVATPGRLWELI 408
Query: 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
G+K+L + L F +DEADRM+E G FRE+ SI++ LP
Sbjct: 409 DEGDKYLGDFTNLLCFGIDEADRMVEKGVFREIDSILERLP 449
>gi|195336062|ref|XP_002034666.1| GM19796 [Drosophila sechellia]
gi|194126636|gb|EDW48679.1| GM19796 [Drosophila sechellia]
Length = 814
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 129/352 (36%), Positives = 188/352 (53%), Gaps = 69/352 (19%)
Query: 17 DDAEEELVS----EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
D+ ELVS EAE + AWN L + +++++ GFK PT IQ +PAA H
Sbjct: 198 DEEAPELVSIPTDEAE---DVSAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGK 254
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREK------------AGKMLEEKGEEAEKYAP 120
KDI+GAAETGSGKTLAFG+P++ ++E +++ G+ E +E E P
Sbjct: 255 KDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPP 314
Query: 121 ------------------------KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
+ L L++TPTRELA+QV +HL AK +RV
Sbjct: 315 PEELDHVSGASDEESDAEEHTQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAA 374
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
I GG++ KQER+L+ P++VV TPGRLWEL + G +HL ++ +SF V+DE DRM+E G
Sbjct: 375 IFGGLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKG 434
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL+S++ +L S+E + Q RQ V+SAT+ L D ++
Sbjct: 435 HFEELRSLLKVL----NSDEQKKHQ--------------RQNFVYSATLTLVHDLPDHMQ 476
Query: 277 HGSLK-----LKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
++ +KQ+V+ IE+L E G+ + IVD+T+ A L ES
Sbjct: 477 KRNVGKRPKFVKQTVD--QKIESLIEELGI-SQPKIVDITSSQQTAQTLTES 525
>gi|195123017|ref|XP_002006006.1| GI18782 [Drosophila mojavensis]
gi|193911074|gb|EDW09941.1| GI18782 [Drosophila mojavensis]
Length = 819
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 177/334 (52%), Gaps = 67/334 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+ + + +M+++ LG++ PT IQ +PAA H KDI+GAAETGSGKTLAFG+PI+
Sbjct: 213 WHGMGVPEPIMRALAELGYEAPTQIQAMTLPAAIHGKKDILGAAETGSGKTLAFGIPILS 272
Query: 96 RLLEEREK-----------------------------------------AGKMLEEKGEE 114
++E +++ +G EE E
Sbjct: 273 GIMELKQRNDDSGIRKAPKVKGAQGPVEEAPPTKDNHELTPSPEELDYVSGASDEESDNE 332
Query: 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARP 174
+ A + L A+++TPTRELA+QV +HL AK + V I GG+S KQER+L+ P
Sbjct: 333 HDPEAKQRPLYAVVLTPTRELAVQVKNHLVSAAKYTGINVAAIFGGLSVAKQERVLRQCP 392
Query: 175 ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGS 234
E+VV TPGRLWEL + G HL ++ +SF +DE DRM+E GHF EL+S++ +L N
Sbjct: 393 EIVVATPGRLWELYAQGNSHLSKIENVSFLCIDETDRMVEKGHFEELRSLLKVL---NAD 449
Query: 235 NEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK-----LKQSVNGL 289
E ++K RQ VFSAT+ L D + ++ +L +KQ+V+
Sbjct: 450 EE---------------RKKLRQNFVFSATLTLVHDLPEHMQKRNLAKRPKFIKQTVD-- 492
Query: 290 NSIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
IE+L E G+ + IVD+T+ A L ES
Sbjct: 493 QKIESLIEELGI-SQPKIVDITSSQQTAQTLTES 525
>gi|194753466|ref|XP_001959033.1| GF12675 [Drosophila ananassae]
gi|190620331|gb|EDV35855.1| GF12675 [Drosophila ananassae]
Length = 813
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 131/356 (36%), Positives = 193/356 (54%), Gaps = 69/356 (19%)
Query: 16 PDDAEEELVSE-AEIST----EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH 70
P+D+++E+V E IS + AWN L + +++++ GF PT IQ +PAA H
Sbjct: 190 PEDSDDEIVPELVSISNGNGVDVSAWNGLGVPAPILRALGEQGFSAPTQIQALTLPAAIH 249
Query: 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEERE---KAG--KMLEEKGEE-AEKYAPKGH- 123
KDI+GAAETGSGKTLAFG+P++ ++E ++ K+G K + KGE+ A + A H
Sbjct: 250 GKKDILGAAETGSGKTLAFGIPMLAGIMELKQRNVKSGIRKAPKTKGEKPAAEPADDEHE 309
Query: 124 -------------------------------LRALIITPTRELALQVTDHLKEVAKGINV 152
L L++TPTRELA+QV +HL AK +
Sbjct: 310 LTPPPEELDHVSGASDEESDVEEHNQRMQRPLYGLVLTPTRELAVQVKNHLVAAAKYTGI 369
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+V I GG++ KQER+L+ PE+VV TPGRLWEL G +HL ++ SF V+DE DRM
Sbjct: 370 KVAAIFGGLAVAKQERVLRQCPEIVVATPGRLWELYCQGNQHLSKIEDASFLVIDETDRM 429
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272
+E GHF EL+S++ +L S+E + +Q RQ V+SAT+ L D
Sbjct: 430 VEKGHFEELRSLLKVL----NSDEQKKQQ--------------RQNFVYSATLTLVHDLP 471
Query: 273 KKLKHGSLK-----LKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
++ ++ +KQ+V+ IE+L E G+ + IVD+T+ A L ES
Sbjct: 472 DHMQKRNVGKRPKFVKQTVD--QKIESLIEELGI-SQPKIVDITSSQQTAQTLTES 524
>gi|326432948|gb|EGD78518.1| hypothetical protein PTSG_12845 [Salpingoeca sp. ATCC 50818]
Length = 984
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 132/205 (64%), Gaps = 9/205 (4%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW LH +M+ + F +PTP+Q+ C+ A +DI+ AETGSGKTLAFGL
Sbjct: 288 DMSAWLPFGLHSSIMEGLQAQRFTKPTPVQEECLQPAIQGFRDIVACAETGSGKTLAFGL 347
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
P++Q ++ R++ + L+AL++ PTRELA+QV DHL +AK
Sbjct: 348 PVIQHIINLRQQG---------DDGDDDALTRLKALVVCPTRELAIQVRDHLVAIAKHCG 398
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+RVV IVGG+S +KQ RLL RPE++VGTPGRLW+L++ G +L L F V+DEADR
Sbjct: 399 IRVVAIVGGISVQKQRRLLAGRPEIIVGTPGRLWDLIAAGNDAFHDLRRLRFLVIDEADR 458
Query: 212 MIENGHFRELQSIIDMLPMTNGSNE 236
M+E GHF+EL++I+ LPM +++
Sbjct: 459 MVEQGHFKELENILRKLPMAERTDD 483
>gi|326479695|gb|EGE03705.1| ATP-dependent RNA helicase MAK5 [Trichophyton equinum CBS 127.97]
Length = 742
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 179/311 (57%), Gaps = 30/311 (9%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
++ E + AW+ L L P L S+ RL F +PTPIQKA IP G+D+IG A TGSG
Sbjct: 158 TDEEADVDVSAWDSLDLRPELQTSLSRLKFAQPTPIQKATIPEIL-SGRDVIGKAATGSG 216
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KTLAFGLPI+Q LL+ +EK L + +++ ALI++PTRELA Q+ HLK
Sbjct: 217 KTLAFGLPILQYLLKRQEKRPSALSKSSDKSPI--------ALILSPTRELAHQLVKHLK 268
Query: 145 EV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
EV A ++ + + GG+S KQ+R L A ++VVGTPGRLW+++S K L +L ++
Sbjct: 269 EVTSSAPNVDAYIASVTGGLSVYKQQRQL-AEADIVVGTPGRLWDMVSSTPKILTKLRSI 327
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
F V+DEADR++ GHF+E+ ++ L T S+E E ++ +S RQTLVF
Sbjct: 328 KFLVVDEADRLLSEGHFKEVGELLSALDKTRTSDEDVDEASEEEEEPAS-----RQTLVF 382
Query: 262 SATIALSADFRKKLKHGSLKLKQSV-NGL----NSIETLSERAGMRANVA-IVDLTNVSV 315
SAT F+K L+ K S N L S+E L ++ + +D+ VS
Sbjct: 383 SAT------FQKGLQQKLAKRDHSFHNNLLDKKESMEYLLKKLRFKDEKPRFIDVNPVSQ 436
Query: 316 LANKLEESFIE 326
+A+ L+E IE
Sbjct: 437 MADNLKEGIIE 447
>gi|326475209|gb|EGD99218.1| ATP-dependent RNA helicase MAK5 [Trichophyton tonsurans CBS 112818]
Length = 742
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 179/311 (57%), Gaps = 30/311 (9%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
++ E + AW+ L L P L S+ RL F +PTPIQKA IP G+D+IG A TGSG
Sbjct: 158 TDEEADVDVSAWDSLDLRPELQTSLSRLKFAQPTPIQKATIPEIL-SGRDVIGKAATGSG 216
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KTLAFGLPI+Q LL+ +EK L + +++ ALI++PTRELA Q+ HLK
Sbjct: 217 KTLAFGLPILQYLLKRQEKRPSALSKSSDKSPI--------ALILSPTRELAHQLVKHLK 268
Query: 145 EV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
EV A ++ + + GG+S KQ+R L A ++VVGTPGRLW+++S K L +L ++
Sbjct: 269 EVTSSAPNVDAYIASVTGGLSVYKQQRQL-AEADIVVGTPGRLWDMVSSTPKILTKLRSI 327
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
F V+DEADR++ GHF+E+ ++ L T S+E E ++ +S RQTLVF
Sbjct: 328 KFLVVDEADRLLSEGHFKEVGELLSALDKTRTSDEDVDEASEEEEEPAS-----RQTLVF 382
Query: 262 SATIALSADFRKKLKHGSLKLKQSV-NGL----NSIETLSERAGMRANVA-IVDLTNVSV 315
SAT F+K L+ K S N L S+E L ++ + +D+ VS
Sbjct: 383 SAT------FQKGLQQKLAKRDHSFHNNLLDKKESMEYLLKKLRFKDEKPRFIDVNPVSQ 436
Query: 316 LANKLEESFIE 326
+A+ L+E IE
Sbjct: 437 MADNLKEGIIE 447
>gi|195429401|ref|XP_002062751.1| GK19535 [Drosophila willistoni]
gi|194158836|gb|EDW73737.1| GK19535 [Drosophila willistoni]
Length = 823
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/360 (36%), Positives = 193/360 (53%), Gaps = 75/360 (20%)
Query: 18 DAEEE---LVS---EAEISTE-FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH 70
D EEE LVS E STE +W+ L + +++++ GF+EPT IQ +PAA H
Sbjct: 195 DEEEEAPQLVSASTEGFTSTEDLSSWHGLGVPQPILRALAEKGFREPTQIQAMTLPAAIH 254
Query: 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGK-----MLEEKGEEAEKY--APKGH 123
KDI+GAAETGSGKTLAFG+P++ +++ +E+ K + KGE+++K P+
Sbjct: 255 GKKDILGAAETGSGKTLAFGIPMLAGIMDLKERNAKHGIRKAPKVKGEDSQKSEEPPRDD 314
Query: 124 -----------------------------------LRALIITPTRELALQVTDHLKEVAK 148
L AL++TPTRELA+QV +HL AK
Sbjct: 315 EHELTPPPEELDHVSGASDEDDSDLENHSASRERPLYALVLTPTRELAVQVKNHLVAAAK 374
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+RV I GG++ KQER+L+ PE+VV TPGRLWEL G HL +++ +SF V+DE
Sbjct: 375 YTGIRVATIFGGLAVAKQERVLRQGPEIVVATPGRLWELYCQGNHHLSKINDVSFLVIDE 434
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
DRM+E GHF EL+S++ +L NG + +++ RQ VFSAT+ L
Sbjct: 435 TDRMVEKGHFEELRSLLKVL---NGDEQ---------------KKQLRQNFVFSATLTLV 476
Query: 269 ADFRKKLKHGSLK-----LKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
D ++ ++ +KQ+V+ IE+L E G+ IVD+T+ A L ES
Sbjct: 477 HDLPDHMQKRNVGKKPKFVKQTVD--QKIESLIEELGI-MQPKIVDITSSQQTAQNLTES 533
>gi|303278168|ref|XP_003058377.1| helicase [Micromonas pusilla CCMP1545]
gi|226459537|gb|EEH56832.1| helicase [Micromonas pusilla CCMP1545]
Length = 1131
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 143/237 (60%), Gaps = 37/237 (15%)
Query: 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
+ AW + LH L++++ LGF PTPIQ C+ A D+IGAAETGSGKTLAFG
Sbjct: 329 ADVSAWLQFDLHSKLLRALQELGFTTPTPIQSECLNPAVKGRCDVIGAAETGSGKTLAFG 388
Query: 91 LPIMQRLLEEREKAGK-------------------------------MLEEKGEEAEKYA 119
LPI+ RLL +R++ + + +E+G
Sbjct: 389 LPILHRLLTQRDEEAEEGSDSESVDGDGDGGGDGDGDDADPDDPFANIEDERGRRGSAAG 448
Query: 120 PK-----GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARP 174
K LRALI+ PTRELA+QV + LK+VAK V VVP+VGGMS +KQERLLK RP
Sbjct: 449 MKLDRRRKALRALIVAPTRELAMQVCEMLKQVAKYSGVDVVPVVGGMSLQKQERLLKRRP 508
Query: 175 ELVVGTPGRLWELM-SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230
E+VV TPGRLWELM G +H V+L LSF VLDEADRM+E GHF EL +IID LPM
Sbjct: 509 EIVVATPGRLWELMHQHGHEHFVDLGRLSFLVLDEADRMVERGHFAELANIIDTLPM 565
>gi|20130173|ref|NP_611467.1| CG9143 [Drosophila melanogaster]
gi|7302399|gb|AAF57487.1| CG9143 [Drosophila melanogaster]
gi|33636633|gb|AAQ23614.1| LD11580p [Drosophila melanogaster]
Length = 813
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 179/333 (53%), Gaps = 62/333 (18%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AWN L + +++++ GFK PT IQ +PAA H KDI+GAAETGSGKTLAFG+
Sbjct: 213 DMSAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDILGAAETGSGKTLAFGI 272
Query: 92 PIMQRLLEEREK------------AGKMLEEKGEEAEKYAP------------------- 120
P++ ++E +++ G+ E +E E P
Sbjct: 273 PMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEELDHVSGASDEESDAEE 332
Query: 121 -----KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPE 175
+ L L++TPTRELA+QV +HL AK +RV I GG++ KQER+L+ P+
Sbjct: 333 QAQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPD 392
Query: 176 LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSN 235
+VV TPGRLWEL + G +HL ++ +SF V+DE DRM+E GHF EL+S++ +L S+
Sbjct: 393 IVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVL----NSD 448
Query: 236 EGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK-----LKQSVNGLN 290
E + Q RQ V+SAT+ L D ++ ++ +KQ+V+
Sbjct: 449 EQKKHQ--------------RQNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQTVD--Q 492
Query: 291 SIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
IE+L E G+ + IVD+T+ A L ES
Sbjct: 493 KIESLIEELGI-SQPKIVDITSSQQTAQTLTES 524
>gi|301103398|ref|XP_002900785.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262101540|gb|EEY59592.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 763
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 147/234 (62%), Gaps = 16/234 (6%)
Query: 3 HTNCGTVVVVSNGPDDAEEELVSEAEI-STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQ 61
+T G ++ G E+ELV + WN+ +LHPLLM+S+ GF PT IQ
Sbjct: 80 NTEDGGKMLNRGGKAKKEQELVEIVALKDVNLPKWNKFKLHPLLMQSLQTCGFSAPTRIQ 139
Query: 62 KACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK 121
+ + A +D++GAA TGSGKTLAFGLPI+ +LL ERE+ G + +
Sbjct: 140 ERTLLPALVDNRDVVGAAPTGSGKTLAFGLPILSQLLHEREQPGYIKD------------ 187
Query: 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTP 181
+ALI+TPTRELA+Q+ HL+++ + + VV +VGGM+ +KQ+R+L RPE+V+GTP
Sbjct: 188 --CKALILTPTRELAIQIQQHLEKMVRNREIGVVTLVGGMAVQKQKRILTYRPEIVIGTP 245
Query: 182 GRLWELMSGGEKHLVELHT-LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGS 234
GRLW+++ +H+ +L T L F V+DEADRM++ G + EL+ I ++L N S
Sbjct: 246 GRLWDIIETNHEHMQDLATSLRFLVVDEADRMLQPGSYSELEKIFEVLRRKNKS 299
>gi|348686576|gb|EGZ26391.1| hypothetical protein PHYSODRAFT_480097 [Phytophthora sojae]
Length = 793
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 134/200 (67%), Gaps = 15/200 (7%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
WN+ +LHPLLM+S+ GF PT IQ+ + A +D++GAA TGSGKTLAFGLPI+
Sbjct: 134 WNKFKLHPLLMQSLQTCGFSAPTRIQERTLLPALVDNRDVVGAAPTGSGKTLAFGLPILS 193
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+LL ERE+ G + +ALI+TPTRELA+Q+ HL+++ + + VV
Sbjct: 194 QLLHEREQPGYTKD--------------CKALILTPTRELAIQIQQHLEKMVRNREIGVV 239
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH-TLSFFVLDEADRMIE 214
+VGGM+ +KQ+R+L RPE+V+GTPGRLW+++ +H+ +L TL F V+DEADRM++
Sbjct: 240 TLVGGMAVQKQKRILSYRPEIVIGTPGRLWDIIEANHEHMKDLATTLRFLVVDEADRMLQ 299
Query: 215 NGHFRELQSIIDMLPMTNGS 234
G + EL+ I D+L N S
Sbjct: 300 PGSYPELEKIFDVLRRKNKS 319
>gi|410898437|ref|XP_003962704.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Takifugu
rubripes]
Length = 739
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 176/336 (52%), Gaps = 64/336 (19%)
Query: 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
T+ AW +L + ++K++ LGF PTPIQ +P+A KDI+GAAETGSGKTLAFG
Sbjct: 154 TDVSAWKDLFVPAPVLKALSSLGFGSPTPIQALTLPSAIRDHKDILGAAETGSGKTLAFG 213
Query: 91 LPIMQRLLEEREKAGKMLEEKGEE--------------AEKYAPKGH------------- 123
+P++ +LE ++ + +++E+ E +E Y+ +
Sbjct: 214 IPMIHTILEWKKNSAELVEDNIEATIPMKSLYLPEPTASENYSVEEEVIKDAETESEDMT 273
Query: 124 -------------LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL 170
L L++TPTRELA+QV H+ V+K +++ +VGG+S EKQ R+L
Sbjct: 274 KEEENAAGSFSQPLLGLVLTPTRELAVQVKHHIDAVSKFTDIKTAIVVGGLSQEKQRRML 333
Query: 171 KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230
K RPE+++ TPGRLW+L+ HL L + V+DEADRM+E GHF EL+++++ML
Sbjct: 334 KLRPEIIIATPGRLWDLIKEKHPHLQNLRQVRCLVIDEADRMVERGHFAELENLLEMLKT 393
Query: 231 TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLN 290
+ + RQ VFSAT+ +L K+S++ +
Sbjct: 394 AHFN-------------------PLRQMFVFSATLTTKHSLPTRLLQ-----KRSLDQRS 429
Query: 291 SIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
+E L ++ G++A IVDLT L E+ I+
Sbjct: 430 RLEILIDKVGIKAKPKIVDLTRKEATVETLTETCIQ 465
>gi|405124025|gb|AFR98787.1| ATP-dependent RNA helicase MAK5 [Cryptococcus neoformans var.
grubii H99]
Length = 771
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 167/310 (53%), Gaps = 36/310 (11%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+ + LHP L +S F PT IQ IPA G+D++G AETGSGKTLA+ LPI+
Sbjct: 173 WSSIPLHPALKRSFLASSFTAPTAIQSRAIPAGV-TGRDVVGVAETGSGKTLAYSLPILH 231
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI----- 150
LL +R++ K K L ALI+ PTRELALQV DHL + K
Sbjct: 232 YLLAQRKR-------------KAGIKRPLSALILCPTRELALQVMDHLNALLKHALATSD 278
Query: 151 --------NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202
V V +VGG+S +KQ+R+L +++V TPGRLW+L+ ++ + TL
Sbjct: 279 GEKPQGPPRVSVGSVVGGLSAQKQKRILDRGCDVIVATPGRLWDLIKADDELATNVRTLR 338
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL-----QRKKRQ 257
F V+DEADRMIENGHF EL+SI+ L + + +G + +++L R Q
Sbjct: 339 FLVIDEADRMIENGHFAELESIV-KLTQRSTAQQGPDDNDPVFEAMATLFEESAARDDMQ 397
Query: 258 TLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA-NVAIVDLTNVSVL 316
T VFSAT LS D +K LK S K +++E L E+ R N ++DL+ +
Sbjct: 398 TFVFSAT--LSKDLQKNLKRRSTSWKGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGV 455
Query: 317 ANKLEESFIE 326
+ L ES IE
Sbjct: 456 VSSLRESMIE 465
>gi|260829397|ref|XP_002609648.1| hypothetical protein BRAFLDRAFT_123567 [Branchiostoma floridae]
gi|229295010|gb|EEN65658.1| hypothetical protein BRAFLDRAFT_123567 [Branchiostoma floridae]
Length = 844
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 119/351 (33%), Positives = 178/351 (50%), Gaps = 71/351 (20%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
V++ + + +W L + ++++ + GF +PTPIQ IP A KD++GAAETGS
Sbjct: 265 VAKKSVDADMTSWTPLFVPDVVLRGLADQGFTQPTPIQAQTIPQAIQAHKDVVGAAETGS 324
Query: 84 GKTLAFGLPIMQRLLEEREKA--------GKMLEEKGE---------------------- 113
GKTLAFG+PI+ R+LE +E+ G EE E
Sbjct: 325 GKTLAFGIPILHRILEWKERNLQSEEGDLGNKNEEVPEDAADDDDDQEMESGGLGCVHVE 384
Query: 114 ---------EAEKYAPK----------GHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
EA + AP L AL++TPTRELA+QV +H+K AK NV+V
Sbjct: 385 DDITLPPELEALQEAPPLSAPTPQKVVSPLLALVLTPTRELAVQVANHIKAAAKYTNVKV 444
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+VGGM+ +KQ+R+L +PE++V TPGRLWE++ HL +L+ L V+DEADRM+E
Sbjct: 445 AVLVGGMAPQKQKRVLDRQPEIIVATPGRLWEMVEQSHPHLSDLNQLQCLVIDEADRMVE 504
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274
GHF EL +++D + NG + + ++RQT VFSAT+ + ++
Sbjct: 505 KGHFAELGNLLDKI---NGED----------------RNRRRQTFVFSATLTMVHSGPQR 545
Query: 275 LKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
L L +R G+R+ +VDL+ + L E+ I
Sbjct: 546 KIMKKKFKMDKDKKLGQ---LMDRVGIRSKPLVVDLSRQQGTVDTLTEARI 593
>gi|195382239|ref|XP_002049838.1| GJ21808 [Drosophila virilis]
gi|194144635|gb|EDW61031.1| GJ21808 [Drosophila virilis]
Length = 819
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 124/365 (33%), Positives = 186/365 (50%), Gaps = 69/365 (18%)
Query: 7 GTVVVVSNGPDDAEEELV-SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACI 65
GT + ++ D+ +LV S + + WN + + +M+++ G++ PT IQ +
Sbjct: 182 GTDLAAASSGDEEVPQLVPSTPQDEKDMTKWNGMGVPAPIMRALAEQGYEAPTQIQAMTL 241
Query: 66 PAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK---------------------- 103
PAA H KDI+GAAETGSGKTLAFG+PI+ ++E +++
Sbjct: 242 PAAIHGKKDILGAAETGSGKTLAFGIPILSGIMELKQRNDGSCIRKAPKVKGTQQVEEPP 301
Query: 104 --------------------AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
+G EE E L A+++TPTRELA+QV +HL
Sbjct: 302 QSKDNHNHELTPPPEELDYVSGASDEESDAEEHNQGMGRPLYAVVLTPTRELAVQVKNHL 361
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
AK +RV I GG+S KQER+L+ PE+VV TPGRLWEL + G +HL ++ ++F
Sbjct: 362 VAAAKYTGIRVAAIFGGLSVAKQERVLRQCPEIVVATPGRLWELYAQGNQHLNKIENVNF 421
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
+DE DRM+E GHF EL+S++ +L ++K RQ VFSA
Sbjct: 422 LCIDETDRMVEKGHFEELRSLLKVL------------------NADEDRKKLRQNFVFSA 463
Query: 264 TIALSADFRKKLKHGSLK-----LKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLAN 318
T+ L D + ++ +L +KQ+V+ IE+L E G+ + IVD+T+ A
Sbjct: 464 TLTLVHDLPEHMQKRNLAKRPKFVKQTVD--QKIESLIEELGI-SQPKIVDITSSQQTAQ 520
Query: 319 KLEES 323
L ES
Sbjct: 521 TLTES 525
>gi|196008359|ref|XP_002114045.1| hypothetical protein TRIADDRAFT_58110 [Trichoplax adhaerens]
gi|190583064|gb|EDV23135.1| hypothetical protein TRIADDRAFT_58110 [Trichoplax adhaerens]
Length = 685
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 168/317 (52%), Gaps = 79/317 (24%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
V N DD ++ + AW+ L++ ++K++ + F PTPIQ + AA
Sbjct: 75 VENPHDDGKDNV--------NMKAWDSLQVPEPVLKALSDMNFLTPTPIQSLSLVAAIRD 126
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAE------KYAP---KG 122
KDIIGAAETGSGKTLA+G+PI+QR+L+ + K + K ++A K P +
Sbjct: 127 RKDIIGAAETGSGKTLAYGIPIIQRILQLKADGKKSSKRKWDKANNKTEVIKETPSKKRK 186
Query: 123 H---------------------------------LRALIITPTRELALQVTDHLKEVAKG 149
H + AL++TPTRELALQV DHL+ AK
Sbjct: 187 HEKGAKPTSSTSDQKSSNKTTVDNMDNSEVAESPVYALVLTPTRELALQVRDHLRSAAKY 246
Query: 150 INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209
++++ IVGG+S KQ+RLL +PE+++ TPGR+W+L+S GE HL ++ L VLDE
Sbjct: 247 TDLKIEAIVGGISQHKQQRLLNYQPEIIIATPGRMWQLLSEGESHLQTINKLPLLVLDEV 306
Query: 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269
DRMIE GH+ EL I++ LP +R RQTLV+SAT+ ++
Sbjct: 307 DRMIEYGHYAELSDILERLP----------------------ERPLRQTLVYSATLTIN- 343
Query: 270 DFRKKLKHGSLKLKQSV 286
K+ +++K+SV
Sbjct: 344 ------KNKKVEMKKSV 354
>gi|392573357|gb|EIW66497.1| hypothetical protein TREMEDRAFT_65359 [Tremella mesenterica DSM
1558]
Length = 744
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 176/326 (53%), Gaps = 36/326 (11%)
Query: 18 DAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
D E+ L EA T W+ + LHP+L +S+ +LGF +PT IQ +P G+D++G
Sbjct: 137 DQEDHLGDEAFDDTLLPQWSSIPLHPILKRSLSKLGFTKPTDIQARALPVCL-AGRDVVG 195
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137
AETGSGKTLA+ LPI+ LL K L +LI+ PTRELAL
Sbjct: 196 VAETGSGKTLAYALPILSYLLRN--------------PRATTSKRTLSSLILCPTRELAL 241
Query: 138 QVTDHLKEVAKGI--------NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189
QV DHL V + + V ++GG+S +KQ+R+L +++V TPGRLW+L+
Sbjct: 242 QVVDHLNTVIRQTFPEKKGPPRISVGSVIGGLSAQKQQRILDRGCDVLVATPGRLWDLIK 301
Query: 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP-MTNGSNEGQSEQTQTC-VT 247
+ E+ + F V+DEADRMIENGHF EL+SI+ + + S G +E+
Sbjct: 302 ANDDLAAEIKRIRFLVIDEADRMIENGHFAELESIVRLTERQSRLSGRGAAEEEDPVFAA 361
Query: 248 VSSLQ----RKKRQTLVFSATIA--LSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGM 301
SSL R QT +FSAT++ L +F++K K GS K + + L E L ER
Sbjct: 362 TSSLDDVSARSDMQTFIFSATLSKDLQQNFKRK-KRGSQKGDKKSSAL---EDLVERLDF 417
Query: 302 R-ANVAIVDLTNVSVLANKLEESFIE 326
R N ++DL+ + L+ES IE
Sbjct: 418 RDKNPEVIDLSPEGGVVAMLKESMIE 443
>gi|134117550|ref|XP_772546.1| hypothetical protein CNBL0260 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818273|sp|P0CQ91.1|MAK5_CRYNB RecName: Full=ATP-dependent RNA helicase MAK5
gi|50255161|gb|EAL17899.1| hypothetical protein CNBL0260 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 772
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 166/310 (53%), Gaps = 36/310 (11%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+ + LHP L +S F PT IQ IPA G+D++G AETGSGKTLA+ LPI+
Sbjct: 174 WSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGI-TGRDVVGVAETGSGKTLAYSLPILH 232
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI----- 150
LL G+ K K L AL++ PTRELALQV DHL + K
Sbjct: 233 YLL-------------GQRKSKAGIKRPLSALVLCPTRELALQVMDHLNALLKHALATPD 279
Query: 151 --------NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202
V V +VGG+S +KQ+R+L+ +++V TPGRLW+L+ ++ + TL
Sbjct: 280 GEKPQGPPRVSVGSVVGGLSAQKQKRILERGCDVIVATPGRLWDLIKADDELATSVRTLR 339
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSE-----QTQTCVTVSSLQRKKRQ 257
F V+DEADRMIENGHF EL+SI+ L + + +G + Q + S R+ Q
Sbjct: 340 FLVIDEADRMIENGHFAELESIV-KLTQRSTAQQGPDDDDPVFQAMATLFEESTAREDMQ 398
Query: 258 TLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA-NVAIVDLTNVSVL 316
T VFSAT LS D +K LK S K +++E L E+ R N ++DL+ +
Sbjct: 399 TFVFSAT--LSKDLQKNLKRRSRSWKGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGV 456
Query: 317 ANKLEESFIE 326
+ L ES IE
Sbjct: 457 VSSLRESMIE 466
>gi|58270130|ref|XP_572221.1| ATP dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|338818274|sp|P0CQ90.1|MAK5_CRYNJ RecName: Full=ATP-dependent RNA helicase MAK5
gi|57228479|gb|AAW44914.1| ATP dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 772
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 166/310 (53%), Gaps = 36/310 (11%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+ + LHP L +S F PT IQ IPA G+D++G AETGSGKTLA+ LPI+
Sbjct: 174 WSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGI-TGRDVVGVAETGSGKTLAYSLPILH 232
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI----- 150
LL G+ K K L AL++ PTRELALQV DHL + K
Sbjct: 233 YLL-------------GQRKSKAGIKRPLSALVLCPTRELALQVMDHLNALLKHALATPD 279
Query: 151 --------NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202
V V +VGG+S +KQ+R+L+ +++V TPGRLW+L+ ++ + TL
Sbjct: 280 GEKPQGPPRVSVGSVVGGLSAQKQKRILERGCDVIVATPGRLWDLIKADDELATSVRTLR 339
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSE-----QTQTCVTVSSLQRKKRQ 257
F V+DEADRMIENGHF EL+SI+ L + + +G + Q + S R+ Q
Sbjct: 340 FLVIDEADRMIENGHFAELESIV-KLTQRSTAQQGPDDDDPVFQAMATLFEESTAREDMQ 398
Query: 258 TLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA-NVAIVDLTNVSVL 316
T VFSAT LS D +K LK S K +++E L E+ R N ++DL+ +
Sbjct: 399 TFVFSAT--LSKDLQKNLKRRSRSWKGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGV 456
Query: 317 ANKLEESFIE 326
+ L ES IE
Sbjct: 457 VSSLRESMIE 466
>gi|195028797|ref|XP_001987262.1| GH20064 [Drosophila grimshawi]
gi|193903262|gb|EDW02129.1| GH20064 [Drosophila grimshawi]
Length = 806
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 181/349 (51%), Gaps = 69/349 (19%)
Query: 22 ELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAET 81
ELVS + W + + +M+++ G++ PT IQ +PAA H KDI+GAAET
Sbjct: 186 ELVS-CSAKVDMSKWQGMGIPTSIMRALAEQGYEAPTQIQAMTLPAAIHGKKDILGAAET 244
Query: 82 GSGKTLAFGLPIMQRLLEE---------REKAGKM------------------------- 107
GSGKTLAFG+PI+ ++E R +A K
Sbjct: 245 GSGKTLAFGIPILSGIMELKQRNDGSGIRTRAPKHKVEATVEAEVPTSKENHELTPPPEE 304
Query: 108 ------LEEKGEEAEKYAPKGH--LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 159
E+ +AE Y+ G L AL++TPTRELA+QV +HL AK +RV I G
Sbjct: 305 LDYVSGASEEESDAEDYSSSGRRPLYALVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFG 364
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR 219
G+S KQER+L+ PE+VV TPGRLWEL + G KHL ++ ++F +DE DRM+E GHF
Sbjct: 365 GLSVAKQERVLRQCPEIVVATPGRLWELYAQGNKHLNKIEHVNFLCIDETDRMVEKGHFE 424
Query: 220 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279
EL+ ++ +L N E +++ RQ VFSAT+ L D + ++ +
Sbjct: 425 ELRMLLKVL---NAHEE---------------RKQLRQNFVFSATLTLIHDLPEHMQKRN 466
Query: 280 LK-----LKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
L KQ+V+ IE+L E G+ + IVD+T+ A L ES
Sbjct: 467 LAKRPKFTKQTVD--QKIESLIEELGI-SQPKIVDITSSQQTAQTLTES 512
>gi|328771868|gb|EGF81907.1| hypothetical protein BATDEDRAFT_10092 [Batrachochytrium
dendrobatidis JAM81]
Length = 529
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 145/247 (58%), Gaps = 31/247 (12%)
Query: 19 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
++E +V ++ ++ W E L+ L++++++LGF PT IQ + + KDIIGA
Sbjct: 134 SDEPIVDHYKVPSD-SKWLEFGLNLQLVQTLHKLGFSCPTDIQAKSLENTLVRHKDIIGA 192
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 138
AETGSGKTLAFGLPI+ L + +K P LIITPTRELA+Q
Sbjct: 193 AETGSGKTLAFGLPILHHLAIQLQKN---------------PNTACIGLIITPTRELAIQ 237
Query: 139 VTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
V+DHLK I ++ PIVGGMS +KQ RL+ +P ++VGTPGRLWEL+ + L L
Sbjct: 238 VSDHLKRAGAAITHKITPIVGGMSLQKQRRLIATKPHIIVGTPGRLWELIQEDPELLDML 297
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 258
++ V+DEADRM+E GHF++L SI+ + + N N Q KR+T
Sbjct: 298 KHTTYLVIDEADRMLEAGHFKDLDSILGCISVCNTDNASQI---------------KRRT 342
Query: 259 LVFSATI 265
+VFSAT+
Sbjct: 343 MVFSATM 349
>gi|147810431|emb|CAN65340.1| hypothetical protein VITISV_038405 [Vitis vinifera]
Length = 458
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/138 (71%), Positives = 109/138 (78%), Gaps = 8/138 (5%)
Query: 3 HTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQK 62
TN + VV DD E + V EAE F WNELR+HPLLMKSI+RLGFK+PTPIQK
Sbjct: 143 QTNEESATVVDK--DDVEGDSVDEAE----FYEWNELRIHPLLMKSIHRLGFKQPTPIQK 196
Query: 63 ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122
ACIPAAAHQGKD++GA+ETGSGKTLA GLPI+QRLLEEREKA + L E GE EKYA G
Sbjct: 197 ACIPAAAHQGKDVVGASETGSGKTLALGLPILQRLLEEREKAAEPLAENGE--EKYAEGG 254
Query: 123 HLRALIITPTRELALQVT 140
LRALIITPTRELALQ+T
Sbjct: 255 ILRALIITPTRELALQIT 272
>gi|353235877|emb|CCA67883.1| related to MAK5-ATP-dependent RNA helicase [Piriformospora indica
DSM 11827]
Length = 703
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 122/305 (40%), Positives = 173/305 (56%), Gaps = 32/305 (10%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+ L L P L++ I GF +PTPIQ+ +P + G+D+IG A+TGSGKTLAF LPI++
Sbjct: 127 WSNLGLSPTLLRRIKDQGFIKPTPIQRETLPLST-SGRDVIGIAQTGSGKTLAFALPILR 185
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN---- 151
+L K L + K +L+ALI+ PTRELALQV+ H+ A +
Sbjct: 186 HILSTNRL--KSLRRQ---------KRNLKALIVAPTRELALQVSAHINACAPQRSKEEI 234
Query: 152 -------VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204
V V IVGGMS +KQ R+L+ +++V TPGRLWEL+S ++ ++ + FF
Sbjct: 235 EAHLPPLVSVATIVGGMSQQKQTRMLERGADVIVATPGRLWELLSDNDELTTQIRQVRFF 294
Query: 205 VLDEADRMIENGHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
VLDEADRM+ENGHF EL II + + S E Q ++ + S + + QT VFSA
Sbjct: 295 VLDEADRMVENGHFAELDKIIRLTARPDPNSLEAQIQEVKLEDDTSDSAQNQMQTFVFSA 354
Query: 264 TIALSADFRKKLK-HGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLE 321
T +S D ++ LK H K K S ++I+ L R R AIVDL+ + + +
Sbjct: 355 T--MSKDLQQNLKRHKRFKDKSS----STIDDLILRLDFRDEQPAIVDLSPKDGVVSTFQ 408
Query: 322 ESFIE 326
ES +E
Sbjct: 409 ESKVE 413
>gi|395503712|ref|XP_003756207.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Sarcophilus harrisii]
Length = 800
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 173/340 (50%), Gaps = 70/340 (20%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 203 DVSAWKDLFVPEPVLRALSSLGFSAPTPIQALALAPAIRDNLDILGAAETGSGKTLAFAI 262
Query: 92 PIMQRLL---EEREKAGKMLEEKGE----------------------------------- 113
P++ +L EE+E+AG E+ GE
Sbjct: 263 PMIHSVLRWQEEQEQAGGHSED-GESLGDANGSSDDGNEEKDGDPSHSPSDEKESADIEL 321
Query: 114 EAEKYAPKGH------LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE 167
E E+ P GH L L++TPTRELA+QV H+ VAK ++ +VGGM+ +KQ+
Sbjct: 322 ELEEEKPTGHSNRSSPLLGLVLTPTRELAVQVKHHIDAVAKFTGIKTALLVGGMAPQKQQ 381
Query: 168 RLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 227
R+L RPE+V+ TPGRLWEL+ +HL L L V+DEADRM+E GHF EL +++M
Sbjct: 382 RMLTRRPEIVIATPGRLWELIKEQHQHLSNLRQLRCLVIDEADRMVERGHFTELTQLLEM 441
Query: 228 LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL--SADFRKKLKHGSLKLKQS 285
L N+ Q +RQT VFSAT+ L A R K + K
Sbjct: 442 L------NDSQY-------------NPQRQTFVFSATLTLVHQAPARVFQKKNAKK---- 478
Query: 286 VNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
++ L ++ L ++ GMR ++DLT L E+ I
Sbjct: 479 IDKLGKLDMLMQKIGMRGKPKVIDLTRKEATVETLTETKI 518
>gi|322795046|gb|EFZ17894.1| hypothetical protein SINV_04950 [Solenopsis invicta]
Length = 736
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 118/347 (34%), Positives = 182/347 (52%), Gaps = 57/347 (16%)
Query: 18 DAEEELVSEAEISTEFD-------------AWNELRLHPLLMKSIYRLGFKEPTPIQKAC 64
D ++ S++++S + D AW+ + + ++K++ F PT IQ
Sbjct: 111 DQNRQIDSDSDLSCDMDSSKKESLAEINIGAWSSMGVPAAVIKALADQNFHSPTMIQAQT 170
Query: 65 IPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG------KMLEEKGEEAEKY 118
+PAA +DI+GAAETGSGKTLAFG+PI++ +L+ + + K + E E E
Sbjct: 171 LPAAILGRRDILGAAETGSGKTLAFGIPIIKGILDLKSQNDGQNCPVKEIGETDSENEDL 230
Query: 119 A-----------------PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGM 161
+ P ALI+TPTRELA+Q+ +HL + AK ++++ ++GGM
Sbjct: 231 SQNCVNVVNNAKLDDHNTPIKPFYALILTPTRELAVQIKNHLTQAAKYTDIKIAIVLGGM 290
Query: 162 STEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFREL 221
+ KQER+L PE+V+ TPGRLWEL+ G HL ++ ++ + +DE DRM+E GHF+EL
Sbjct: 291 AAVKQERILNKGPEIVIATPGRLWELIEEGNSHLNQIDSVRYLAIDETDRMMEKGHFQEL 350
Query: 222 QSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK 281
D+L N + E +RKKRQT VFSAT+ + D L +
Sbjct: 351 H---DILEKMNANPE---------------KRKKRQTFVFSATLTMVHDLPDYLDKKKKR 392
Query: 282 LKQS-VNGLNSIETLSERAGMR--ANVAIVDLTNVSVLANKLEESFI 325
+S + L S + L + + N +VDLT S +A+ L E I
Sbjct: 393 YARSKICKLTSDQKLQKIIQLLKIKNPKVVDLTKQSGMADNLTECRI 439
>gi|328778593|ref|XP_001122313.2| PREDICTED: ATP-dependent RNA helicase DDX24-like [Apis mellifera]
Length = 747
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 176/327 (53%), Gaps = 56/327 (17%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W L + ++K++ F +PTPIQ +P A +DI+GAAETGSGKTLAFG+PI+
Sbjct: 140 WQILGVSTPIIKALKDQQFYQPTPIQALTLPPAILGHRDILGAAETGSGKTLAFGIPIIN 199
Query: 96 RLLEEREKA------------GKMLEEKG---------------------EEAEKYAPKG 122
+LE + K K++E KG E+ +K +
Sbjct: 200 GILELKNKQSDQINIKSEKERNKIIENKGWICSENKTIEIDNSSSESDYEEDIDKNYMEK 259
Query: 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPG 182
L ALI+TPTRELA+Q+ DHL + AK +++++ ++GGM+ KQER+L PE+V+ TPG
Sbjct: 260 PLYALILTPTRELAIQIKDHLTKAAKYVDIKIAVVLGGMAAVKQERILSKGPEIVIATPG 319
Query: 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQT 242
RLWEL+ G HL ++ ++ + V+DE DRM+E GHF+ELQ +++ + +NE
Sbjct: 320 RLWELIQYGNPHLCKVDSVKYLVIDETDRMLEKGHFQELQQLLEKI----NTNEK----- 370
Query: 243 QTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK----HGSLKLKQSVNGLNSIETLSER 298
+ ++RQT VFSAT+ + D + L+ + + +E + E
Sbjct: 371 ---------RLRERQTFVFSATLTMVHDIPEYLQKKKRKHIKSKIKKLTPSQKLEKIMEL 421
Query: 299 AGMRANVAIVDLTNVSVLANKLEESFI 325
G++ N I+D+T S + L E I
Sbjct: 422 VGIK-NPKIIDVTKESGITANLTECRI 447
>gi|327302418|ref|XP_003235901.1| ATP-dependent RNA helicase MAK5 [Trichophyton rubrum CBS 118892]
gi|326461243|gb|EGD86696.1| ATP-dependent RNA helicase MAK5 [Trichophyton rubrum CBS 118892]
Length = 746
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 172/308 (55%), Gaps = 27/308 (8%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
E + AW+ L L P L S+ RL F +PTPIQKA IP G+D+IG A TGSGKTL
Sbjct: 162 EPDVDVSAWDSLDLRPELQTSLSRLKFAQPTPIQKATIPEILG-GRDVIGKAATGSGKTL 220
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV- 146
AFGLPI+Q LL +E+ L + ++K ALI++PTRELA Q+ HLKEV
Sbjct: 221 AFGLPILQYLLNRQEQHPSTLLALPKSSDKTP-----IALILSPTRELAHQLVKHLKEVT 275
Query: 147 --AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204
A ++ + + GG+S KQ+R L A +++VGTPGRLW+++S + L +L ++ F
Sbjct: 276 SSAPNVDAYIASVTGGLSVHKQQRQL-AEADIIVGTPGRLWDMVSSTPQILTKLRSIKFL 334
Query: 205 VLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
V+DEADR++ GHF+E+ ++ L T S++ E + + RQTLVFSAT
Sbjct: 335 VVDEADRLLSEGHFKEVGELLSALDRTRTSDQDVDETPEEEEEPAG-----RQTLVFSAT 389
Query: 265 IALSADFRKKLKHGSLKLKQSV--NGLNSIET----LSERAGMRANVAIVDLTNVSVLAN 318
F+K L+ K S N L+ E+ L E +D+ VS +A+
Sbjct: 390 ------FQKGLQQKLAKRDHSFHDNLLDKKESMEYLLKELRFKDEKPRFIDVNPVSQMAD 443
Query: 319 KLEESFIE 326
L+E IE
Sbjct: 444 NLKEGIIE 451
>gi|325185978|emb|CCA20482.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 743
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 165/293 (56%), Gaps = 36/293 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W LH ++++++ F PT IQ+ I AA Q +D++G A TGSGKTLAFG+PI+Q
Sbjct: 152 WEAFNLHHTILEALHDNKFLAPTVIQRKAIAAALIQREDVVGIASTGSGKTLAFGIPILQ 211
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L + +G + G +ALII PTRELALQ+ HLK + K ++ +
Sbjct: 212 HFLNK--TSGALKSHPG-----------CKALIIAPTRELALQIQKHLKAMLKDGSIGIS 258
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH-TLSFFVLDEADRMIE 214
+VGGMS +KQER+L PE+V+ TPGRLW+++ G KH LH +L F V+DEADRM++
Sbjct: 259 VLVGGMSLQKQERVLSYEPEIVIATPGRLWDIVQNGNKHFENLHLSLEFLVVDEADRMLQ 318
Query: 215 NGHFRELQSIIDML---PMTNGSNEG---QSEQTQTCVTVSSLQRKK----------RQT 258
G +++L+ ++ ++ P + ++ G +E +T + ++ ++ RQT
Sbjct: 319 TGSYKDLEKLLKLINSKPASTKASRGGDSDAEDKKTLLREDAVNTRQFDLRGNKAQSRQT 378
Query: 259 LVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLT 311
+FSAT+ RKK G N L+ + T+ +R G R I+DL+
Sbjct: 379 FLFSATMTGKCHNRKKQSKG------KTNTLDMLHTVIQRVGFRKKPTIIDLS 425
>gi|321261600|ref|XP_003195519.1| ATP dependent RNA helicase [Cryptococcus gattii WM276]
gi|317461993|gb|ADV23732.1| ATP dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 772
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 174/332 (52%), Gaps = 41/332 (12%)
Query: 18 DAEEELVSEAEISTEFD---AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKD 74
D EE S+ E + D W+ + LHP L +S F PT IQ IPA G+D
Sbjct: 153 DEEEHPDSDDEPAFNDDLLPEWSSISLHPALKRSFLASSFTAPTAIQSRAIPAGI-TGRD 211
Query: 75 IIGAAETGSGKTLAFGLPIMQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133
++G AETGSGKTLA+ LPI+ LL +R+ +AG K L AL++ PTR
Sbjct: 212 VVGVAETGSGKTLAYALPILHYLLGQRKLRAGI--------------KRPLSALVLCPTR 257
Query: 134 ELALQVTDHLKEVAKGI-------------NVRVVPIVGGMSTEKQERLLKARPELVVGT 180
ELALQV DHL + K + V +VGG+S +KQ+R+L ++++ T
Sbjct: 258 ELALQVMDHLNALLKHALATSDGEKPQGPPRISVGSVVGGLSAQKQKRILDRGCDVIIAT 317
Query: 181 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSE 240
PGRLW+L+ ++ + TL F V+DEADRMIENGHF EL+SI+ L + +G +
Sbjct: 318 PGRLWDLIKADDELATSVRTLRFLVIDEADRMIENGHFAELESIV-KLTQRSTVKQGPDD 376
Query: 241 -----QTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETL 295
Q + S+ R QT VFSAT LS D + LK S K +++E L
Sbjct: 377 DDPVFQAMATIFEESVARDDMQTFVFSAT--LSKDLQTNLKRRSRSWKGKGKRSSTLEDL 434
Query: 296 SERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
E+ R N ++DL+ + + L ES IE
Sbjct: 435 VEKLDFRDENPEVIDLSPEGGVVSSLRESMIE 466
>gi|302510172|ref|XP_003017046.1| hypothetical protein ARB_05340 [Arthroderma benhamiae CBS 112371]
gi|291180616|gb|EFE36401.1| hypothetical protein ARB_05340 [Arthroderma benhamiae CBS 112371]
Length = 746
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 178/313 (56%), Gaps = 35/313 (11%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGK 85
EA+I + AW+ L L P L S+ RL F +PTPIQKA IP G+D+IG A TGSGK
Sbjct: 162 EADI--DVSAWDSLDLRPELQTSLSRLRFAQPTPIQKATIPEILG-GRDVIGKAATGSGK 218
Query: 86 TLAFGLPIMQRLL---EEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142
TLAFGLPI+Q LL E+R L + G++ ALI++PTRELA Q+ H
Sbjct: 219 TLAFGLPILQCLLNRQEQRPSTSLALSKSGDKKPI--------ALILSPTRELAHQLVKH 270
Query: 143 LKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 199
LKEV A ++ + + GG+S KQ+R L A +++VGTPGRLW+++S + L +L
Sbjct: 271 LKEVTSSAPNVDAYIASVTGGLSVHKQQRQL-AEADIIVGTPGRLWDMVSSTPQILTKLR 329
Query: 200 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTL 259
++ F V+DEADR++ GHF+E+ ++ L T S+E E + + RQTL
Sbjct: 330 SIKFLVVDEADRLLSEGHFKEVGELLSALDKTRTSDEDVDEAPEEEEEPAG-----RQTL 384
Query: 260 VFSATIALSADFRKKLKHGSLKLKQS-----VNGLNSIETLSERAGMRANVA-IVDLTNV 313
VFSAT F+K L+ +K S ++ S+E L ++ R +D+ V
Sbjct: 385 VFSAT------FQKGLQQKLVKRDHSFHDNLLDKKESMEYLLKKLRFRDEKPRFIDVNPV 438
Query: 314 SVLANKLEESFIE 326
S +A+ L+E IE
Sbjct: 439 SQMADNLKEGIIE 451
>gi|261205266|ref|XP_002627370.1| ATP-dependent RNA helicase MAK5 [Ajellomyces dermatitidis SLH14081]
gi|239592429|gb|EEQ75010.1| ATP-dependent RNA helicase MAK5 [Ajellomyces dermatitidis SLH14081]
Length = 772
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 173/315 (54%), Gaps = 22/315 (6%)
Query: 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
E L + E + AW L + + S+ +L F +PTPIQ ACIPA A G D++G A
Sbjct: 175 EALNEDDEEEVDVSAWGPLDISAEIQTSLSKLKFAKPTPIQSACIPAIA-AGHDVVGKAS 233
Query: 81 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVT 140
TGSGKTLAFG+PI++ LE R + E A K ALI++PTRELA Q+
Sbjct: 234 TGSGKTLAFGIPILEYYLETRHDEPSQQHKDRESAGKDPI-----ALILSPTRELAHQLA 288
Query: 141 DHLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
H+ + A IN R+ + GG+S +KQ+RLL A ++VVGTPGRLW+++S G L
Sbjct: 289 KHITALCTNAPNINARIALLTGGLSVQKQQRLL-ANADIVVGTPGRLWDVISTGHGLLRR 347
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
+ F V+DEADR++ GHF+E++ I+ L + ++ + + + T + + +RQ
Sbjct: 348 FQNIKFLVVDEADRLLSEGHFKEVEEIVTALDLKETNDGIEEPASHSESTDDASKAPRRQ 407
Query: 258 TLVFSATIALSADFRKKLKHGSLKLKQSVNG-----LNSIETLSERAGMRANVA-IVDLT 311
TLVFSAT F K L+ + +G S+E L ++ R + +D+
Sbjct: 408 TLVFSAT------FHKGLQQKLAGKSRFFDGDLLDNKQSMEYLLKKLNFREDKPKFIDVN 461
Query: 312 NVSVLANKLEESFIE 326
V+ +A L+E +E
Sbjct: 462 PVAQMAENLKEGLVE 476
>gi|313238237|emb|CBY13329.1| unnamed protein product [Oikopleura dioica]
Length = 598
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 146/252 (57%), Gaps = 40/252 (15%)
Query: 20 EEELVSEAE--ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
EE+ +S +E + W L L+++I LGFK PT IQ+ CIP + K I+G
Sbjct: 124 EEKAISNSEYVFQNKLPEWRRFNLDVALLRAIDSLGFKSPTDIQRQCIPKGLNSKKTILG 183
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137
AAETGSGKT+A+GLPI+Q+++ G + E + P+ ALI+ PTRELA+
Sbjct: 184 AAETGSGKTIAYGLPILQKII------GYL---DFSEEKTVGPQ----ALILCPTRELAM 230
Query: 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL-KARPELVVGTPGRLWELMSGGEKHLV 196
QV D ++ V+K +V+ IVGGM+ EKQ+R+L K RPE++V TPGR WEL G+++L
Sbjct: 231 QVHDSIRLVSKFTSVKTTAIVGGMAAEKQQRVLSKIRPEIIVATPGRFWELRETGQEYLQ 290
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
L ++ +FV+DEADRM E GHF EL I+ L ++
Sbjct: 291 NLRSIKYFVVDEADRMAEKGHFAELDKIVGTLS------------------------RES 326
Query: 257 QTLVFSATIALS 268
Q VFSAT+ L+
Sbjct: 327 QKFVFSATLTLT 338
>gi|405950996|gb|EKC18946.1| ATP-dependent RNA helicase DDX24 [Crassostrea gigas]
Length = 1159
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 177/301 (58%), Gaps = 31/301 (10%)
Query: 17 DDAEEELVS--EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKD 74
+++EEE S + +I+ + AW +L + +++++ + F PTPIQ +P+A KD
Sbjct: 204 EESEEETKSPDDGKINEKMAAWKDLFVPKEVLQALCKSKFFAPTPIQAMALPSAIRDRKD 263
Query: 75 IIGAAETGSGKTLAFGLPIMQ----RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130
++GAAETGSGKTLAFG+P+ +++++ + + L + G +K + K L ALI+
Sbjct: 264 VVGAAETGSGKTLAFGIPVGDLGCVKVIDDADFSELGLPDAGPLLKK-SNKSPL-ALILQ 321
Query: 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
PTRELA+QV DHL+ A ++ + PI+GGMS EKQ+R+LK P+++V TPGRLWELMS
Sbjct: 322 PTRELAVQVKDHLQVAAAYTDITIAPILGGMSAEKQKRILKKCPDILVATPGRLWELMS- 380
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
+ +L + + V+DEADRMIE GHF EL I++ + NE
Sbjct: 381 QDPYLSRIDEVDTLVIDEADRMIEKGHFEELTQILNYI----NRNEK------------- 423
Query: 251 LQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDL 310
++ RQT VFSAT+ L ++ S + K ++ +ETL R MR ++DL
Sbjct: 424 -KKNTRQTFVFSATLTLVHSGPQR----SSRKKMALTEEKKLETLMSRIQMREKPKVIDL 478
Query: 311 T 311
T
Sbjct: 479 T 479
>gi|241253045|ref|XP_002403786.1| RNA helicase, putative [Ixodes scapularis]
gi|215496560|gb|EEC06200.1| RNA helicase, putative [Ixodes scapularis]
Length = 463
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 144/249 (57%), Gaps = 30/249 (12%)
Query: 19 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
+ +E + E + AW + ++K++ L F +PTPIQ +P+A D++GA
Sbjct: 46 SNDETPVQEEDQKDMSAWLNCYVPEPVLKALAELNFTQPTPIQAQTLPSAIRDHMDVMGA 105
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 138
AETGSGKTLAFG+PI+ + E++ + G P L+AL++TPTRELA+Q
Sbjct: 106 AETGSGKTLAFGIPILHHIAEQKARIGD------------GPMS-LQALVLTPTRELAIQ 152
Query: 139 VTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
V HL+ AK + VV ++GG+S +KQ RLLK RPE+VV TPGRLWEL+ HL ++
Sbjct: 153 VKQHLQSAAKYTGIGVVNVIGGLSADKQLRLLKRRPEIVVATPGRLWELVDQNTPHLSDV 212
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 258
+ + V+DEADRM+E GHF +L ++ + M +G K+RQ
Sbjct: 213 SNVRYLVIDEADRMVEKGHFEDLTRLLAL--MNADRVDGA---------------KRRQN 255
Query: 259 LVFSATIAL 267
VFSAT+ +
Sbjct: 256 FVFSATLTM 264
>gi|143345244|sp|Q0CI35.2|MAK5_ASPTN RecName: Full=ATP-dependent RNA helicase mak5
Length = 774
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 177/307 (57%), Gaps = 20/307 (6%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+E + + AW L L P ++ S+ +L F PT +QK+CIP G D++G A TGSG
Sbjct: 193 AEEDDGVDISAWESLGLSPEILNSLSKLKFSSPTAVQKSCIPPIL-DGHDVVGKASTGSG 251
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KTLAFG+PI++ LE++ + K ++K E + ALI++PTRELA Q+ H+
Sbjct: 252 KTLAFGIPILEYYLEKKRRETKNKDDKKETSPI--------ALILSPTRELAHQLVKHIG 303
Query: 145 EV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
EV A G+N R+ + GG+S +KQ+RLL ++V+GTPGR+WE++SGG+ + ++ +
Sbjct: 304 EVITHAPGVNARIALLTGGLSVQKQQRLLNG-ADIVIGTPGRVWEVLSGGQGLISKMKEI 362
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
+ V+DEADR++ GHF+E I+ L ++ +E+ ++ S Q RQTLVF
Sbjct: 363 KYLVVDEADRLLSEGHFKEAHEILAALDREEINDFPGAEEDESDDEDSKTQ---RQTLVF 419
Query: 262 SATIALSADFRKKLK-HGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLANK 319
SAT D ++KL G +N S+E L ++ R +D+ VS +A
Sbjct: 420 SAT--FHRDLQQKLAGKGKWTGSDLMNKQESMEYLLKKLNFREEKPKFIDVNPVSQMAEG 477
Query: 320 LEESFIE 326
L+E +E
Sbjct: 478 LKEGIVE 484
>gi|452989521|gb|EME89276.1| hypothetical protein MYCFIDRAFT_185631 [Pseudocercospora fijiensis
CIRAD86]
Length = 723
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 174/312 (55%), Gaps = 33/312 (10%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
+E T+ AW L+L P M S+ +L F PTPIQ+A IP G D+IG A TGS
Sbjct: 137 ANEDAADTDVSAWMPLKLSPDTMASLSKLKFSNPTPIQEAAIPKI-FAGHDVIGKASTGS 195
Query: 84 GKTLAFGLPIMQRLLE---EREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVT 140
GKTLAFG+PI++R LE EREK E+ P ALI++PTRELA Q+
Sbjct: 196 GKTLAFGIPILERFLEKISEREKL-----------EQSTPI----ALILSPTRELAHQLN 240
Query: 141 DHLKEVAKGINVR---VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
HL + G++ + + + GG+S +KQ+RLL+ ++V+GTPGRLWE++ G+
Sbjct: 241 SHLAALFDGLDAKKPTIATLTGGLSLQKQQRLLRD-ADVVIGTPGRLWEVIGSGKGVAAA 299
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQR--KK 255
L + F V+DEADR++ GHF+E++ I++ L E Q E+ Q S + K+
Sbjct: 300 LKQIEFLVVDEADRLLSEGHFKEVEEILNAL-----DREDQDEEHQEVPDSSHAVKSPKE 354
Query: 256 RQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVA-IVDLTNVS 314
RQTLVFSAT +KKL + ++ ++E L + R ++ +D+ V+
Sbjct: 355 RQTLVFSAT--FDRGLQKKLVGKISSKRDLLHNKEAMEYLMSKLNFREDIPQFIDVNPVN 412
Query: 315 VLANKLEESFIE 326
LA L+E IE
Sbjct: 413 QLATGLKEGLIE 424
>gi|115400477|ref|XP_001215827.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114191493|gb|EAU33193.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 791
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 177/307 (57%), Gaps = 20/307 (6%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+E + + AW L L P ++ S+ +L F PT +QK+CIP G D++G A TGSG
Sbjct: 193 AEEDDGVDISAWESLGLSPEILNSLSKLKFSSPTAVQKSCIPPIL-DGHDVVGKASTGSG 251
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KTLAFG+PI++ LE++ + K ++K E + ALI++PTRELA Q+ H+
Sbjct: 252 KTLAFGIPILEYYLEKKRRETKNKDDKKETSPI--------ALILSPTRELAHQLVKHIG 303
Query: 145 EV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
EV A G+N R+ + GG+S +KQ+RLL ++V+GTPGR+WE++SGG+ + ++ +
Sbjct: 304 EVITHAPGVNARIALLTGGLSVQKQQRLLNG-ADIVIGTPGRVWEVLSGGQGLISKMKEI 362
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
+ V+DEADR++ GHF+E I+ L ++ +E+ ++ S Q RQTLVF
Sbjct: 363 KYLVVDEADRLLSEGHFKEAHEILAALDREEINDFPGAEEDESDDEDSKTQ---RQTLVF 419
Query: 262 SATIALSADFRKKLK-HGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLANK 319
SAT D ++KL G +N S+E L ++ R +D+ VS +A
Sbjct: 420 SAT--FHRDLQQKLAGKGKWTGSDLMNKQESMEYLLKKLNFREEKPKFIDVNPVSQMAEG 477
Query: 320 LEESFIE 326
L+E +E
Sbjct: 478 LKEGIVE 484
>gi|302659739|ref|XP_003021557.1| hypothetical protein TRV_04404 [Trichophyton verrucosum HKI 0517]
gi|291185460|gb|EFE40939.1| hypothetical protein TRV_04404 [Trichophyton verrucosum HKI 0517]
Length = 746
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 173/311 (55%), Gaps = 33/311 (10%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
E + AW+ L L P L S+ R F +PTPIQKA IP G+D+IG A TGSGKTL
Sbjct: 162 EADVDVSAWDSLDLRPELQTSLSRFKFAQPTPIQKATIPEILG-GRDVIGKAATGSGKTL 220
Query: 88 AFGLPIMQRLL---EEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
AFGLPI+Q LL E+R L + G++ ALI++PTRELA Q+ HLK
Sbjct: 221 AFGLPILQYLLNRQEQRPSTSLTLSKSGDKKPV--------ALILSPTRELAHQLVKHLK 272
Query: 145 EV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
EV A ++ + + GG+S KQ+R L A +++VGTPGRLW+++S + L +L ++
Sbjct: 273 EVTSSAPNVDAYIASVTGGLSVHKQQRQL-AEADIIVGTPGRLWDMVSSTPQILTKLRSI 331
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
F V+DEADR++ GHF+E+ ++ L T S+E E + + RQTLVF
Sbjct: 332 KFLVVDEADRLLSEGHFKEVGELLSALDKTRTSDEDVDEAPEEEEELGG-----RQTLVF 386
Query: 262 SATIALSADFRKKLKHGSLKLKQS-----VNGLNSIETLSERAGMRANVA-IVDLTNVSV 315
SAT F+K L+ K S ++ S+E L ++ + +D+ VS
Sbjct: 387 SAT------FQKGLQQKLAKRDHSFHDNLLDKKESMEYLLKKLRFKDEKPRFIDVNPVSQ 440
Query: 316 LANKLEESFIE 326
+A+ L+E IE
Sbjct: 441 MADNLKEGIIE 451
>gi|119470070|ref|XP_001258007.1| ATP dependent RNA helicase, putative [Neosartorya fischeri NRRL
181]
gi|143345269|sp|A1DMT9.1|MAK5_NEOFI RecName: Full=ATP-dependent RNA helicase mak5
gi|119406159|gb|EAW16110.1| ATP dependent RNA helicase, putative [Neosartorya fischeri NRRL
181]
Length = 777
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 183/308 (59%), Gaps = 18/308 (5%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+E + + AW+ L L P ++ + ++ F PT +Q+ACIP +G D+IG A TGSG
Sbjct: 192 TEEDDGADVSAWDSLGLSPEILTGLSKMKFASPTSVQEACIPQIL-EGHDVIGKASTGSG 250
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KTLAFG+PI++ LE+ K + EK +++EK + ALI++PTRELA Q++ H+
Sbjct: 251 KTLAFGIPILEHYLEK--KRDDISAEKEKKSEKDSTP---IALILSPTRELAHQLSKHIG 305
Query: 145 EV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
E+ A G+N R+ + GG+S +KQ+RLL ++V+GTPGR+WE++S G+ + ++ +
Sbjct: 306 ELIAQAPGVNARIALLTGGLSVQKQQRLLSG-ADIVIGTPGRVWEILSTGQGLIRKMQQI 364
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLP-MTNGSNEGQSEQTQTCVTVSSLQRKKRQTLV 260
F V+DEADR++ GHF+E++ I++ L + +G G Q + S +RQTLV
Sbjct: 365 KFLVVDEADRLLSEGHFKEVEEILNALDRVEDGEVPGGENQASEEESDPS---SERQTLV 421
Query: 261 FSATIALSADFRKKLK-HGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLAN 318
FSAT D ++KL G ++ S++ L ++ R +D+ +S +A+
Sbjct: 422 FSAT--FHRDLQQKLAGKGKWTGGDVMDKKESMDYLLQKLNFREEKPKFIDMNPISQMAD 479
Query: 319 KLEESFIE 326
L+E +E
Sbjct: 480 NLKEGIVE 487
>gi|296813881|ref|XP_002847278.1| ATP-dependent RNA helicase MAK5 [Arthroderma otae CBS 113480]
gi|238842534|gb|EEQ32196.1| ATP-dependent RNA helicase MAK5 [Arthroderma otae CBS 113480]
Length = 749
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 171/302 (56%), Gaps = 31/302 (10%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW+ L L P L S+ RL F +PTPIQ A IP G+D+IG A TGSGKTLAFGLPI+
Sbjct: 174 AWDGLDLRPELQTSLSRLKFSKPTPIQTAAIPDIL-AGRDVIGKAATGSGKTLAFGLPIL 232
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV---AKGIN 151
Q LL K G+ + + +K ALI++PTRELA Q+ HLKEV A ++
Sbjct: 233 QYLLNNNNKHGQGGIKSSSKEKKPI------ALILSPTRELAHQLVKHLKEVTSSAPNVD 286
Query: 152 VRVVPIVGGMSTEKQER-LLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210
+ + GG+S KQ+R LL A +++VGTPGRLW+++S K L +L + F V+DEAD
Sbjct: 287 AYIASVTGGLSMHKQQRQLLDA--DIIVGTPGRLWDMVSSTPKILTKLRGIKFLVVDEAD 344
Query: 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
R++ GHF+EL ++ L S++ + + V +RQTLVFSAT
Sbjct: 345 RLLSEGHFKELGELLSALDKAKTSDDVHGNEDEEDEPV------ERQTLVFSAT------ 392
Query: 271 FRKKLKHGSLKLKQS-----VNGLNSIETLSERAGMRANVA-IVDLTNVSVLANKLEESF 324
F+K L+ K +S ++ S+E L ++ + VD+ VS +A+ L+E
Sbjct: 393 FQKGLQQKLAKRDKSFHDNLLDKKESMEYLLKKLNFKDEKPRFVDVNPVSQMADNLKEGI 452
Query: 325 IE 326
IE
Sbjct: 453 IE 454
>gi|324502072|gb|ADY40913.1| ATP-dependent RNA helicase DDX24 [Ascaris suum]
Length = 790
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 151/282 (53%), Gaps = 36/282 (12%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW L +MK++ LGF +PT IQK +P+A D++GAAETGSGKTLA+ +
Sbjct: 222 DLSAWMPFCLPDEIMKALADLGFTKPTEIQKLVLPSAVRDKLDVLGAAETGSGKTLAYAI 281
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
P++ RLL+ + E + + HLRALI+ PTREL +Q+ H+ + K N
Sbjct: 282 PLIVRLLDAQNSM-----------EDWTLQRHLRALILAPTRELVVQIRKHIDALIKYTN 330
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK--HLVELHTLSFFVLDEA 209
+ IVGG+S +KQERLLK RPE+VV TPGR W L + +L L V+DE
Sbjct: 331 FKATSIVGGLSQQKQERLLKYRPEIVVATPGRFWSLAGNAPQGSYLANWQKLLCLVVDET 390
Query: 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269
DRM+E GHF EL+ I++ + S KRQTLVFSAT+
Sbjct: 391 DRMVEKGHFEELEFILE--------------------AIKSDGNVKRQTLVFSATLTFVH 430
Query: 270 DFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLT 311
++L +++ Q + I+ L E G+R + D+T
Sbjct: 431 PAPRRL---NIQQTQQMTTKEKIDRLIEIVGLRKERKVFDIT 469
>gi|327348577|gb|EGE77434.1| ATP-dependent RNA helicase MAK5 [Ajellomyces dermatitidis ATCC
18188]
Length = 772
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 171/316 (54%), Gaps = 24/316 (7%)
Query: 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
E L + E + AW L + + S+ +L F +PTPIQ ACIPA A G D++G A
Sbjct: 175 EALNEDDEEEVDVSAWGPLDISAEIQTSLSKLKFAKPTPIQSACIPAIA-AGHDVVGKAS 233
Query: 81 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVT 140
TGSGKTLAFG+PI++ LE R + E A K ALI++PTRELA Q+
Sbjct: 234 TGSGKTLAFGIPILEYYLETRHDEPSQQHKDPESAGKDPI-----ALILSPTRELAHQLA 288
Query: 141 DHLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
H+ + A IN R+ + GG+S +KQ+RLL A ++VVGTPGRLW+++S G L
Sbjct: 289 KHITALCTNAPNINARIALLTGGLSVQKQQRLL-ANADIVVGTPGRLWDVISTGHGLLRR 347
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
+ F V+DEADR++ GHF+E++ I+ L + ++ + + + T + + +RQ
Sbjct: 348 FQNIKFLVVDEADRLLSEGHFKEVEEIVTALDLKETNDGIEEPASHSESTDDASKAPRRQ 407
Query: 258 TLVFSATIALSADFRKKLKHGS-------LKLKQSVNGLNSIETLSERAGMRANVAIVDL 310
TLVFSAT ++KL S L KQS+ L SE +D+
Sbjct: 408 TLVFSAT--FHKGLQQKLAGKSRFFDGDLLDNKQSMEYLLKKLNFSED-----KPKFIDV 460
Query: 311 TNVSVLANKLEESFIE 326
V+ +A L+E +E
Sbjct: 461 NPVAQMAENLKEGLVE 476
>gi|345560201|gb|EGX43326.1| hypothetical protein AOL_s00215g62 [Arthrobotrys oligospora ATCC
24927]
Length = 801
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 183/322 (56%), Gaps = 22/322 (6%)
Query: 22 ELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAET 81
E +S+ ++ + AW L L P ++++ +L F EPTPIQK IP+ G D+IG A T
Sbjct: 190 EGLSDDDLEVDLPAWESLSLSPYTLQALQKLTFTEPTPIQKLSIPSII-AGHDLIGKAAT 248
Query: 82 GSGKTLAFGLPIMQRLL---EEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 138
GSGKTLAFG+PI + L ++R K+L E+ +EA+ L ALI++PTRELA Q
Sbjct: 249 GSGKTLAFGIPIFEHWLSSSKDRAVPAKLLSEEDKEADASKLTNPLSALILSPTRELAHQ 308
Query: 139 VTDHLKEV--AKGINV--RVVPIVGGMSTEKQERLL--KARPELVVGTPGRLWELMSGGE 192
+T+H++ + A G+ VV + GG+S +KQ R L ++VV TPGRLWE++S
Sbjct: 309 ITEHIQALITASGVTSPPHVVSLTGGLSIQKQLRKLGQSGGADVVVATPGRLWEILSEKS 368
Query: 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQ 252
+ F V+DEADR+++ GHF+E++ I+D+L + E ++ + T+ + +
Sbjct: 369 GYTRWFRKTRFLVIDEADRVLQEGHFKEVEQILDVL-TRDAEEEDVAQNPEVYGTIKTFK 427
Query: 253 R---KKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGL----NSIETLSERAGMR-AN 304
K RQ LVFSAT S D ++KL K S +GL +S++ L ++ R +
Sbjct: 428 NSKPKDRQMLVFSAT--FSKDLQQKLSSKK-SWKNSNSGLLDDKDSLDYLLKKLPFREEH 484
Query: 305 VAIVDLTNVSVLANKLEESFIE 326
VD+ V +A L E +E
Sbjct: 485 PQWVDVNPVDQMAENLREGIVE 506
>gi|158289761|ref|XP_311419.4| AGAP010702-PA [Anopheles gambiae str. PEST]
gi|157018482|gb|EAA07044.4| AGAP010702-PA [Anopheles gambiae str. PEST]
Length = 739
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 178/336 (52%), Gaps = 57/336 (16%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
V E + ++ AW +L + +++++ GFK PT IQ +P A + +D++GAAETGS
Sbjct: 196 VPEPYSTADYTAWVQLGVSEPIVRALADKGFKVPTEIQNKSLPVAIYGRRDLLGAAETGS 255
Query: 84 GKTLAFGLPIMQRLLE---------------EREKAGKMLEEKGEEAEKYAPKGH----- 123
GKTLAFG+P+++ ++ E + +E E+A+ +A +G
Sbjct: 256 GKTLAFGIPMLEGIMHLKKGKKPVADDSSEHEMTPPSEDMEVTEEDAKVFAEEGRKLGNS 315
Query: 124 --------LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPE 175
L LI+TPTRELA+Q+ DHLK VAK ++ + + GG++T KQER+L+ PE
Sbjct: 316 SAAPEDKPLYGLILTPTRELAVQINDHLKAVAKYTDINIATVFGGLATVKQERMLRKCPE 375
Query: 176 LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSN 235
+V+ TPGRLWEL+ HL ++ + + V+DE DRM+E GHF EL+ ++L + N +
Sbjct: 376 IVIATPGRLWELVKSENHHLSKVTDIRYLVIDETDRMLEKGHFEELK---ELLALINANE 432
Query: 236 EGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH------GSLKLKQSVNGL 289
E +K R+ +FSAT+ + + +K +LKL
Sbjct: 433 EA---------------KKLRRNYIFSATLTMDHEMPTHIKRHPKKSKKALKLTPGQRMA 477
Query: 290 NSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
N IET+ GM + IVDLT A L ES I
Sbjct: 478 NLIETI----GM-TDPKIVDLTQDHGTARTLTESRI 508
>gi|156550634|ref|XP_001604682.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Nasonia
vitripennis]
Length = 636
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/353 (33%), Positives = 180/353 (50%), Gaps = 76/353 (21%)
Query: 29 ISTEFD-AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
+STE + W+ L + ++ +++ F PT IQ +P A +DI+GAAETGSGKTL
Sbjct: 2 VSTEHNEGWSTLGVPSVITEALVEQNFYSPTAIQALALPPAILGRRDILGAAETGSGKTL 61
Query: 88 AFGLPIMQRLLEEREKAGKMLEE------------------------------------- 110
AFG+P++ +LE ++K GK ++
Sbjct: 62 AFGIPVLNGILELQKKEGKTVQSTSGKFREVNKDEEAASDISDNEGDENDEPMPEEQSID 121
Query: 111 -------------KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
K +E + P L ALI+TPTRELA+Q+ DHL + AK ++++ +
Sbjct: 122 KNGIGLVKVVNNVKFDEFDNVKPTKPLYALILTPTRELAIQIKDHLTKAAKYTDIKIAVV 181
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
VGGM+ KQER+L PE+V+ TPGRLWEL+ G HL +L ++ + V+DE DRM+E GH
Sbjct: 182 VGGMAAVKQERILSKGPEIVIATPGRLWELIDEGNPHLSQLPSVKYLVIDETDRMLEKGH 241
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF-----R 272
F EL II+ + N +S + K+RQT VFSAT+ L D R
Sbjct: 242 FLELHDIIERI------NSVES------------KVKRRQTFVFSATLTLVHDIPDYLQR 283
Query: 273 KKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
KK+++ K+ + G ++ + + ++ N I+D+T + A L E I
Sbjct: 284 KKIRNSKSKIFKLTPG-QKLQKVIDMLKVK-NPKIIDVTKDTGTARNLTECRI 334
>gi|453089379|gb|EMF17419.1| DEAD-domain-containing protein, partial [Mycosphaerella populorum
SO2202]
Length = 687
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 176/317 (55%), Gaps = 32/317 (10%)
Query: 23 LVSEAE-ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAET 81
LV E+E + WN L+L P M S+ +L F +PTPIQ+ IP G D+IG A T
Sbjct: 167 LVEESEDTGVDVSQWNPLKLSPDTMASLSKLRFTKPTPIQQHVIPEVL-AGHDVIGKAST 225
Query: 82 GSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTD 141
GSGKTLAFG+PI++R LE ++ +KG+ G L AL+++PTRELA Q+
Sbjct: 226 GSGKTLAFGIPILERFLESSQQ-----RKKGKSGS-----GPL-ALLLSPTRELAHQLDK 274
Query: 142 HLKEVAKGINV---RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
HL + G++ + + GG+S +KQ+R+LK ++V+GTPGRLWE++ G L
Sbjct: 275 HLTALFSGLSTDRPSIATLTGGLSLQKQQRMLKD-ADVVIGTPGRLWEVIGDGHGVAASL 333
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTV------SSLQ 252
+ F V+DEADR++ GHF+E++ I++ L +E S++T+ T +S +
Sbjct: 334 KHIDFLVIDEADRLLSEGHFKEVEEILNALDRDEAQDE--SDETENATTPRTTKSQASSR 391
Query: 253 RKKRQTLVFSATI--ALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVA-IVD 309
KRQTLVFSAT AL KL H L + S+E L + R +D
Sbjct: 392 PAKRQTLVFSATFDRALQRKLVGKLSHRDNLLSNA----QSMEYLLSKLNFREETPKFID 447
Query: 310 LTNVSVLANKLEESFIE 326
+ ++ LA L+E IE
Sbjct: 448 MNPINQLATGLKEGLIE 464
>gi|440638151|gb|ELR08070.1| hypothetical protein GMDG_02897 [Geomyces destructans 20631-21]
Length = 741
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 41/312 (13%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
D+AE+E ++E W EL L ++ ++ ++GF PTPIQ+ IP G D+I
Sbjct: 205 DEAEDEDMTE---------WAELNLSTAMLSALAKIGFTTPTPIQQEAIPEVL-SGNDVI 254
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
G A TGSGKTLAFG+PI++R L++ E + E A + + ALI++PTRELA
Sbjct: 255 GKASTGSGKTLAFGIPIIERWLQDNEG------REDETATEKKTQKSATALILSPTRELA 308
Query: 137 LQVTDHLKEVAKGINVR--VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
Q+TDHL ++ KG++ + + GG++ +KQ+R L AR ++++GTPGRLWE++S G +
Sbjct: 309 HQLTDHLTKLCKGLSDAPFIATVTGGLAIQKQQRQL-ARADIIIGTPGRLWEVLSSGIEL 367
Query: 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 254
L TL F V+DEADR++ GHF+E + II L + +E + VT
Sbjct: 368 SKSLKTLKFLVVDEADRLLTEGHFKEAEEIISKLDRHDADDE-----EEHVVT------- 415
Query: 255 KRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVS 314
RQTLVFSAT+A ++KL G +L G + +E L ++ + +D+ S
Sbjct: 416 -RQTLVFSATLAKG--LQQKL-SGKGRL-----GDDGMEYLMKKLKFKGEPKFIDVA-TS 465
Query: 315 VLANKLEESFIE 326
+A L+E IE
Sbjct: 466 AMAEGLKEGVIE 477
>gi|170053020|ref|XP_001862485.1| ATP-dependent RNA helicase DDX24 [Culex quinquefasciatus]
gi|167873707|gb|EDS37090.1| ATP-dependent RNA helicase DDX24 [Culex quinquefasciatus]
Length = 817
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 152/278 (54%), Gaps = 54/278 (19%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
S ++ W EL + +++++ GF++PT IQ +PAA +D++GAAETGSGKTLAF
Sbjct: 217 SADYFKWTELGVSEPIVRALADKGFRQPTEIQTLSLPAAILGKRDLLGAAETGSGKTLAF 276
Query: 90 GLPIMQRLLEEREKAGKMLEEKGEEAEKY----------------APKG----------- 122
G+P+++ +++ + G +K + E AP G
Sbjct: 277 GIPLLEGIMKLKANGGLKTVKKSDAEESREGHELTPEPEELEFYPAPDGGDSVLAAQDLE 336
Query: 123 ---------HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKAR 173
L ALI+TPTRELA+Q+ DHLK V K ++++ + GG++ KQER+LK
Sbjct: 337 REKKKDLNKPLYALILTPTRELAVQINDHLKAVTKYTDIQIATVFGGLAVVKQERMLKRC 396
Query: 174 PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNG 233
PE+V+ TPGRLWELM G HL ++ + F V+DE DRM+E GHF EL+ +++ML
Sbjct: 397 PEIVIATPGRLWELMQAGNHHLSKMDQIRFLVIDETDRMLEKGHFDELKQLLEML----- 451
Query: 234 SNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
Q+E+ K R+ +FSAT+ L D
Sbjct: 452 ---NQNEEAT----------KLRRNYIFSATLTLDHDL 476
>gi|239611412|gb|EEQ88399.1| ATP-dependent RNA helicase MAK5 [Ajellomyces dermatitidis ER-3]
Length = 772
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 174/320 (54%), Gaps = 32/320 (10%)
Query: 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
E L + E + AW L + + S+ +L F +PTPIQ ACIPA A G D++G A
Sbjct: 175 EALNEDDEEEVDVSAWGPLDISAEIQTSLSKLKFAKPTPIQSACIPAIA-AGHDVVGKAS 233
Query: 81 TGSGKTLAFGLPIMQRLLEERE----KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
TGSGKTLAFG+PI++ LE R + K LE G++ ALI++PTRELA
Sbjct: 234 TGSGKTLAFGIPILEYYLETRHDEPSQQHKDLESVGKDP---------IALILSPTRELA 284
Query: 137 LQVTDHLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193
Q+ H+ + A IN R+ + GG+S +KQ+RLL A ++VVGTPGRLW+++S G
Sbjct: 285 HQLAKHITALCTNAPNINARIALLTGGLSVQKQQRLL-ANADIVVGTPGRLWDVISTGHG 343
Query: 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQR 253
L + F V+DEADR++ GHF+E++ I+ L + ++ + + + T + +
Sbjct: 344 LLRRFQNIKFLVVDEADRLLSEGHFKEVEEIVTALDLKETNDGIEEPASHSESTDDASKA 403
Query: 254 KKRQTLVFSATIALSADFRKKLKHGS-------LKLKQSVNGLNSIETLSERAGMRANVA 306
+RQTLVFSAT ++KL S L KQS+ L SE
Sbjct: 404 PRRQTLVFSAT--FHKGLQQKLAGKSRFFDGDLLDNKQSMEYLLKKLNFSED-----KPK 456
Query: 307 IVDLTNVSVLANKLEESFIE 326
+D+ V+ +A L+E +E
Sbjct: 457 FIDVNPVAQMAENLKEGLVE 476
>gi|443706484|gb|ELU02510.1| hypothetical protein CAPTEDRAFT_152919 [Capitella teleta]
Length = 608
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 121/326 (37%), Positives = 170/326 (52%), Gaps = 53/326 (16%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW L + +M ++ F +PTPIQ +PAA +DI+GAA TGSGKTLAF +PI+
Sbjct: 3 AWMNLFVPEKVMLALGEQNFVQPTPIQIESLPAAIRDRRDIVGAAHTGSGKTLAFAIPIL 62
Query: 95 QRLLEEREKAGKMLEEK-------------------------GEEAEKYAPKGH------ 123
+++ +E A L ++ G+E + +
Sbjct: 63 NGIMKLKEAAENELNQQLDGEEENEDDEILDEEEPEESAESDGDEEVEEKAEAESSEETK 122
Query: 124 -LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPG 182
L ALI+TPTRELA+QV +H++ AK + + +VGGMS +KQERLL+ PE+VV TPG
Sbjct: 123 PLYALILTPTRELAIQVKNHIEAAAKYTGITCMAVVGGMSVQKQERLLRRGPEIVVATPG 182
Query: 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQT 242
RLWEL S HL ++ + F VLDEADRM+E GHF EL+ I+ + ++ NE
Sbjct: 183 RLWELYSELSNHLSKMPKIRFLVLDEADRMVEKGHFEELEKILGTI-NSDAENE------ 235
Query: 243 QTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLN---SIETLSERA 299
K+RQT VFSAT+ + ++L K K V L+ +E L +
Sbjct: 236 -----------KRRQTFVFSATLTYTHKAPERLFMQKKKKKLKVTELSIEKKLEVLMGQV 284
Query: 300 GMRANVAIVDLTNVSVLANKLEESFI 325
GMR I+DLT A L E+ I
Sbjct: 285 GMRERPKIIDLTEKQRTAETLTEARI 310
>gi|299742573|ref|XP_001832577.2| ATP-dependent RNA helicase MAK5 [Coprinopsis cinerea okayama7#130]
gi|298405246|gb|EAU89326.2| ATP-dependent RNA helicase MAK5 [Coprinopsis cinerea okayama7#130]
Length = 759
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 122/302 (40%), Positives = 165/302 (54%), Gaps = 61/302 (20%)
Query: 16 PD-DAEEELVSEAEISTEFDA------WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA 68
PD D++E SE E FD+ W+ L LHP L +SI+ F +PT IQK IP A
Sbjct: 128 PDEDSDESADSEPE-KEPFDSETLLPEWHPLGLHPRLTRSIHARNFSKPTEIQKEAIPLA 186
Query: 69 AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128
QG+D++G A+TGSGKTLA+GLPI+ LL ++ + K + LRALI
Sbjct: 187 L-QGRDVVGVAQTGSGKTLAYGLPILHTLLNQKRPSSKR-------------RRPLRALI 232
Query: 129 ITPTRELALQVTDHLKEVAKGI------------------NVRVVPIVGGMSTEKQERLL 170
+ PTRELALQV+ HL + + I +V V IVGGMS +KQ+R+L
Sbjct: 233 LAPTRELALQVSQHLTDTLRAIEPQEDEGDEKKQAVKPPPHVSVAAIVGGMSAQKQKRVL 292
Query: 171 KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII----- 225
++++ TPGRLW+++S + E+ L F VLDEADRMIE GHF EL +I+
Sbjct: 293 DRGVDVLIATPGRLWDIVSTDDNLANEIRNLRFLVLDEADRMIETGHFAELDNILRLTLR 352
Query: 226 ----DMLPMTNGSNEGQSEQTQTCVT------VSSLQR-KKRQTLVFSATIALSADFRKK 274
D +P G + +SE T + SS Q+ QT VFSAT LS D ++
Sbjct: 353 ESSEDEIP---GIDNEKSEDEDTNMDDKADDKPSSAQKGTDLQTFVFSAT--LSKDLQRN 407
Query: 275 LK 276
LK
Sbjct: 408 LK 409
>gi|307190840|gb|EFN74688.1| ATP-dependent RNA helicase DDX24 [Camponotus floridanus]
Length = 739
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 177/334 (52%), Gaps = 64/334 (19%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
+AW+ + + ++K++ F PT IQ +PAA +DI+GAAETGSGKTLAFG+PI
Sbjct: 135 EAWSSMGVPTSIIKALADQNFHSPTAIQAQTLPAAILGRRDILGAAETGSGKTLAFGIPI 194
Query: 94 MQRLLEEREKAGKMLEEKGEEAEKYAPKGH------------------------------ 123
++ +L +++ +M EE+ K+ KG
Sbjct: 195 IKGILHLKKQQLEM--SMSEESTKHKNKGSSSEIEARENEDISESENCVHVVNNIKLDNC 252
Query: 124 -------LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPEL 176
L ALI+TPTRELA+Q+ +HL + AK ++++ ++GGM+ KQER+L PE+
Sbjct: 253 QNISIKPLYALILTPTRELAIQIKNHLTQAAKYTDIKIAVVLGGMAAVKQERILSKGPEI 312
Query: 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNE 236
V+ TPGRLWEL+ G HL ++ ++ + +DE DRM+E GHF+EL D+L N
Sbjct: 313 VIATPGRLWELIQDGNSHLNQIDSIRYLAIDETDRMMEKGHFQEL---YDLLEKMNA--- 366
Query: 237 GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF-----RKKLKHGSLKLKQSVNGLNS 291
+ ++ +KRQT VFSAT+ + D RKK ++ K+ + G
Sbjct: 367 ------------NPVKLEKRQTFVFSATLTMVHDIPDYLERKKKRYARSKIYKLTPG-QK 413
Query: 292 IETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
++ + ++ N +VDLT S +A+ L E I
Sbjct: 414 LQKIIHLLKIK-NPKVVDLTKESGMADNLTECRI 446
>gi|449303441|gb|EMC99448.1| hypothetical protein BAUCODRAFT_29794 [Baudoinia compniacensis UAMH
10762]
Length = 718
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 141/238 (59%), Gaps = 21/238 (8%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW L+L P + S+ RLGF PTPIQ+A IP A G D++G A TGSGKTLAFG+
Sbjct: 128 DVSAWRPLKLSPDTLASLARLGFSNPTPIQRAAIPEALG-GHDVVGKASTGSGKTLAFGI 186
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
PI++R LE R K + KG H AL+++PTRELA Q+ HL+ +
Sbjct: 187 PILERFLELRSKRNNV-PSKGR---------HPLALLLSPTRELAHQLDKHLRALCSSDY 236
Query: 152 V---RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ + GG+S KQ+RLLK ++V+GTPGRLWE+MS G+ L L + F ++DE
Sbjct: 237 FDGPSIATVTGGLSILKQQRLLKT-ADIVIGTPGRLWEVMSSGQGTLDALSRIQFLIVDE 295
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS-LQRKKRQTLVFSATI 265
ADR++ GH++E++ I+D L + SE + V + R RQTLVFSAT
Sbjct: 296 ADRLLSEGHYKEVEEILDALYRRH-----DSEDDEAAVQADAGDSRPARQTLVFSATF 348
>gi|295658672|ref|XP_002789896.1| ATP-dependent RNA helicase MAK5 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226282857|gb|EEH38423.1| ATP-dependent RNA helicase MAK5 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 771
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 121/326 (37%), Positives = 180/326 (55%), Gaps = 40/326 (12%)
Query: 14 NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
N DD E+ VS AW L + L S+ +L F +PTPIQ ACIP A G
Sbjct: 182 NEEDDQEDVDVS---------AWEPLGISAELQTSLAKLKFAKPTPIQSACIPEIA-AGH 231
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133
D++G A TGSGKTLAFG+PI++ LE + ++ G ++ + P ALI++PTR
Sbjct: 232 DVVGKASTGSGKTLAFGIPILEYHLENNRD--EPIQSTGSDSSRKNPI----ALILSPTR 285
Query: 134 ELALQVTDHLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
ELA Q++ HL A IN R+ + GG+S +KQ RLL A ++V+GTPGRLW+++S
Sbjct: 286 ELAHQISKHLTAFISNAPNINARIALLTGGLSVQKQHRLL-ANADIVIGTPGRLWDVISN 344
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSI---IDMLPMTNGSNEGQSE-QTQTCV 246
G+ + + ++ F V+DEADR++ GHF+E++ I +D + +G E S+ +++
Sbjct: 345 GQGLIRKFQSIKFLVVDEADRLLSEGHFKEVEEILTSLDRKEINDGVEEPDSDSESERDN 404
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG-----LNSIETLSERAGM 301
T S L RQTLVFSAT F + L+ + V+G S+E L E+
Sbjct: 405 TKSFL----RQTLVFSAT------FHRSLQQKLAGKSRFVDGGLLDNKQSMEYLLEKLNF 454
Query: 302 R-ANVAIVDLTNVSVLANKLEESFIE 326
R +D+ VS +A + E +E
Sbjct: 455 REEKPKFIDVNPVSQMAENIREGLVE 480
>gi|391340745|ref|XP_003744697.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Metaseiulus
occidentalis]
Length = 757
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 143/252 (56%), Gaps = 47/252 (18%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
DDAE+ L E W + P ++K++ +L + EP+ IQ C+ A DI+
Sbjct: 241 DDAEKALTKE---------WEIFEIEPRILKALAQLRYTEPSEIQSQCLIPAIRDRLDIL 291
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
GAAETGSGKTLAFG+P++ RLL+ER + L ALI+TPTRELA
Sbjct: 292 GAAETGSGKTLAFGIPLVHRLLQER------------------CRNKLGALILTPTRELA 333
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
+Q+ HL ++ K N+ VV IVGG+S EKQ RLL RPE++V TPGRL+EL+ +
Sbjct: 334 VQIKKHLMDITKFTNLHVVCIVGGLSHEKQTRLLAKRPEIIVATPGRLFELVQEDPQLQE 393
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
+L ++ V+DEADRMI+ GHF E+Q I+ + N + G KR
Sbjct: 394 QLISVRCLVIDEADRMIQKGHFEEMQLILKFM---NSNRIG-----------------KR 433
Query: 257 QTLVFSATIALS 268
Q LVFSAT+ +
Sbjct: 434 QNLVFSATLTMD 445
>gi|322693567|gb|EFY85423.1| ATP-dependent RNA helicase MAK5 [Metarhizium acridum CQMa 102]
Length = 794
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 172/293 (58%), Gaps = 13/293 (4%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W L L P L+ +I +LGF +PT IQ+ IP G D+IG A+TGSGKTLAFG+PI++
Sbjct: 215 WVALNLSPNLVSAIAKLGFSKPTAIQEKSIPEIIA-GGDVIGKAQTGSGKTLAFGIPIVE 273
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI--NVR 153
+ LE RE+ ++G++ +K +G + A+I++PTRELA Q+ +H+K V G+ +
Sbjct: 274 KWLEMREEQEDQGGDRGDQPKKKNGEGPM-AVILSPTRELAKQIGEHIKAVCDGLPASPY 332
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+ + GG+S +KQ+R L+ ++V+GTPGRLWE++ G K + + F V+DEADR+
Sbjct: 333 ICVVTGGLSIQKQQRQLE-EADIVIGTPGRLWEVLDGDAKLQEQFTRIKFLVVDEADRLF 391
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
+ G F+E ++II L N G S+ + S + ++RQTLVFSAT + +
Sbjct: 392 KVGQFKEAENIIGALDRENPEGHGYSDNSD-----SEDETRERQTLVFSAT--FDKNLQT 444
Query: 274 KLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
KL G K ++ + + L + R +D+ VS +A+ L E IE
Sbjct: 445 KL-AGKGKSAKAGSDEEKMAYLMKCLKFRGEPKFIDVNPVSQMADNLREVLIE 496
>gi|383856439|ref|XP_003703716.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Megachile
rotundata]
Length = 770
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/349 (32%), Positives = 174/349 (49%), Gaps = 80/349 (22%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W L L+ ++K++ F PTPIQ +P A +DI+GAAETGSGKTLAFG+PI+
Sbjct: 146 WGRLGLYAPIIKAMKDQQFHTPTPIQALTLPPAIMGYRDILGAAETGSGKTLAFGIPIIN 205
Query: 96 RLLEEREK------------AGKMLEEKG------------------------------- 112
+LE + + G +E KG
Sbjct: 206 GILELKNRQVDKSDIKPINGTGNNIENKGWICSDNEMKDDDSSSETDHEEDIDDVNENNI 265
Query: 113 -----------EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGM 161
E E Y K L ALI+TPTRELA+Q+ DHL + AK ++++ ++GG+
Sbjct: 266 GCIRVIDKVKINEDEHYVKKP-LYALILTPTRELAIQIKDHLTKAAKYTDIKIAVLLGGL 324
Query: 162 STEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFREL 221
+ KQER+L PE+V+ TPGRLWEL+ G HL ++ ++ + +DE DRM+E GHF+EL
Sbjct: 325 AAVKQERILSKGPEIVIATPGRLWELIQQGNPHLNQVDSIKYLAIDETDRMLEKGHFQEL 384
Query: 222 QSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK----- 276
Q +++ + ++ +R++RQ VFSAT+ + D L+
Sbjct: 385 QQLLEK------------------ININKKKREERQNFVFSATLTMVHDIPDYLQKKKKK 426
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H S K+ + G ++ + + GM+ +VD+T S A+ L E I
Sbjct: 427 HNSSKIFKLTPG-QKLQKIIQLVGMKT-PKVVDVTRESGTASNLTECKI 473
>gi|157119653|ref|XP_001653437.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108875246|gb|EAT39471.1| AAEL008728-PA [Aedes aegypti]
Length = 813
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 167/328 (50%), Gaps = 68/328 (20%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E+ W EL + +++++ GF+ PT IQ +P A +D++GAAETGSGKTLAFG+
Sbjct: 212 EYFKWTELGVSEPIVRALADKGFQTPTEIQTLSLPVAIMGKRDLLGAAETGSGKTLAFGI 271
Query: 92 PIMQRLL-------------------EEREKAGKMLEEKGEEAEKYAPKGH--------- 123
P+++ ++ EE ++ G + EE E Y +
Sbjct: 272 PLLEGIMKLKASEPYRVRKCENASPKEEEQREGHEMTPPPEELEYYPDPSNGDSSVMLQQ 331
Query: 124 -------------LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL 170
L ALI+TPTRELA+Q+ DHLK + K ++++ + GG++ KQER+L
Sbjct: 332 NLEKEEDPQLDKPLYALILTPTRELAVQINDHLKAITKYTDIKIATVFGGLAAVKQERML 391
Query: 171 KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230
K PE+V+ TPGRLWEL+ HL ++ + F V+DE DRM+E GHF EL+ +++M+
Sbjct: 392 KKCPEIVIATPGRLWELIQARNPHLCKVDEIRFLVIDETDRMLERGHFEELKQLLEMI-- 449
Query: 231 TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLN 290
N + E K R+ +FSAT+ + D + L + K K+
Sbjct: 450 -NNNEEAT---------------KLRRNYIFSATLTMDHDLPEHLVAKAKKNKK------ 487
Query: 291 SIETLSERAGMRAN--VAIVDLTNVSVL 316
I E G R N V I+ +TN V+
Sbjct: 488 -IHITKETTGQRLNNLVQIIGMTNPKVV 514
>gi|121699618|ref|XP_001268081.1| ATP dependent RNA helicase, putative [Aspergillus clavatus NRRL 1]
gi|143345189|sp|A1CTL8.1|MAK5_ASPCL RecName: Full=ATP-dependent RNA helicase mak5
gi|119396223|gb|EAW06655.1| ATP dependent RNA helicase, putative [Aspergillus clavatus NRRL 1]
Length = 774
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 175/308 (56%), Gaps = 18/308 (5%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+E + + AW+ L L L+ I ++ F PT +Q ACIP G D++G A TGSG
Sbjct: 189 AEEDDGVDVSAWDALNLSTELLTGISKMKFTSPTAVQAACIPHIL-DGHDVVGKASTGSG 247
Query: 85 KTLAFGLPIMQRLLEE-REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
KTLAFG+PI++ LE+ R+ G ++ +K + + P ALI++PTRELA Q+ H+
Sbjct: 248 KTLAFGIPILEHYLEKNRDGHGDIIGKK--DKKDSTPI----ALILSPTRELAHQLAKHI 301
Query: 144 KEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 200
E+ A G+N R+ + GG+S +KQ+RLL A ++V+GTPGR+WE+MS G+ + ++
Sbjct: 302 GELVTQAPGVNARIALLTGGLSVQKQQRLL-AGADIVIGTPGRVWEIMSTGQGLIRKMQK 360
Query: 201 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLV 260
+ F V+DEADR++ GHF+E++ II L + ++ S R +RQTLV
Sbjct: 361 IKFLVVDEADRLLSEGHFKEVEEIIGALDRVEDGD--VLDEEDEAPEEESDPRSERQTLV 418
Query: 261 FSATIALSADFRKKLK-HGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLAN 318
FSAT D ++KL G +N S++ L ++ R +D VS +A
Sbjct: 419 FSAT--FHRDLQQKLAGKGKWTGGDIMNKKESMDYLLQKLNFREEKPKFIDTNPVSQMAE 476
Query: 319 KLEESFIE 326
L+E +E
Sbjct: 477 NLKEGIVE 484
>gi|322710764|gb|EFZ02338.1| ATP dependent RNA helicase, putative [Metarhizium anisopliae ARSEF
23]
Length = 794
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 170/293 (58%), Gaps = 13/293 (4%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W L L P L+ +I +LGF +PT IQ+ IP G D+IG A+TGSGKTLAFG+PI++
Sbjct: 215 WVALNLSPNLVSAIAKLGFSKPTAIQEKSIPEIIA-GGDVIGKAQTGSGKTLAFGIPIVE 273
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI--NVR 153
+ L+ E+ + G++ K +G + A+I++PTRELA Q+ DH+K V G+ +
Sbjct: 274 KWLDMHEEQEDQAGDDGDQPNKKNREGPM-AVILSPTRELAKQIGDHIKAVCDGLPASPY 332
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+ + GG+S +KQ+R L+ + ++V+GTPGRLWE++ G K + + F V+DEADR+
Sbjct: 333 ICVVTGGLSIQKQQRQLE-KADIVIGTPGRLWEVLDGDAKLQQQFTRIKFLVVDEADRLF 391
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
+ G F+E ++II L N G S+ + + + ++RQTLVFSAT + +
Sbjct: 392 KVGQFKEAENIIGALDRENPEENGYSDNSD-----AEDETRERQTLVFSAT--FDKNLQT 444
Query: 274 KLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
KL G K ++ + + L + R +D+ VS +A+ L E IE
Sbjct: 445 KL-AGKGKSAKTGSDEEKMAYLMKCLKFRGEPKFIDVNPVSQMADNLREGLIE 496
>gi|332028699|gb|EGI68731.1| ATP-dependent RNA helicase DDX24 [Acromyrmex echinatior]
Length = 743
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/329 (33%), Positives = 176/329 (53%), Gaps = 52/329 (15%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
A+I+ E AW + + ++K++ F PT IQ +PAA +DI+GAAETGSGKT
Sbjct: 138 AKINAE--AWRSMGVPTAVIKALADQNFHSPTMIQTQTLPAAILGRRDILGAAETGSGKT 195
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKG-EEAEK------------------------YAPK 121
LAFG+PI++ +L+ + + EK EE++ P
Sbjct: 196 LAFGIPIIKGILDLKNQNKDQNSEKDTEESDSENIVLSEFDNCVNIVNDKKLDDCHNIPT 255
Query: 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTP 181
L ALI+TPTRELA+Q+ +HL + AK ++++ ++GGM+ KQER+L PE+V+ TP
Sbjct: 256 KPLYALILTPTRELAMQIKNHLTQAAKYTDIKIAVVLGGMAAVKQERILNKGPEIVIATP 315
Query: 182 GRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQ 241
GRLWEL+ G HL ++ ++ + +DE DRM+E GHF+EL +++ +
Sbjct: 316 GRLWELIQEGNSHLNQIDSIRYLAIDETDRMMEKGHFQELHDLLEKM------------- 362
Query: 242 TQTCVTVSSLQRKKRQTLVFSATIALSADF-----RKKLKHGSLKLKQSVNGLNSIETLS 296
+ +KRQT VFSAT+ + D RKK ++ K+ + + ++ +
Sbjct: 363 -----NADPAKMQKRQTFVFSATLTMVHDLPDYLDRKKKRYARSKICK-LTPDQKLQKII 416
Query: 297 ERAGMRANVAIVDLTNVSVLANKLEESFI 325
+ ++ N +VDLT S A+ L E I
Sbjct: 417 QLLKIK-NPKVVDLTKESGTADNLTECRI 444
>gi|225679099|gb|EEH17383.1| ATP-dependent RNA helicase mak5 [Paracoccidioides brasiliensis
Pb03]
Length = 772
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 178/322 (55%), Gaps = 32/322 (9%)
Query: 14 NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
N DD E+ VS AW L + L S+ +L F +PTPIQ ACIP A G
Sbjct: 183 NEEDDQEDVDVS---------AWEPLGISAELQTSLAKLKFAKPTPIQSACIPVIA-AGH 232
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133
D++G A TGSGKTLAFG+PI++ LE + ++ G ++ + P ALI++PTR
Sbjct: 233 DVVGKAPTGSGKTLAFGIPILEYHLENNRD--EPIQNTGSDSSRKHPI----ALILSPTR 286
Query: 134 ELALQVTDHLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
ELA Q++ HL A IN R+ + GG+S +KQ RLL A ++V+GTPGRLW+++S
Sbjct: 287 ELAHQISKHLTAFISNAPNINARIALLTGGLSVQKQHRLL-ANADIVIGTPGRLWDVISN 345
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
G+ + + ++ F V+DEADR++ GHF+E++ I+ L ++ + + + ++
Sbjct: 346 GQGLIRKFQSIKFLVVDEADRLLSEGHFKEVEEILTALDRKEINDGVEESDSDSESERAN 405
Query: 251 LQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG-----LNSIETLSERAGMR-AN 304
++ RQTLVFSAT F + L+ + ++G S+E L E+ R
Sbjct: 406 IKSFPRQTLVFSAT------FHRGLQQKLAGKSRFIDGGLLDNKQSMEYLLEKLNFREEK 459
Query: 305 VAIVDLTNVSVLANKLEESFIE 326
+D+ VS +A L+E +E
Sbjct: 460 PKFIDVNPVSQMAENLKEGLVE 481
>gi|393907272|gb|EFO18351.2| hypothetical protein LOAG_10144 [Loa loa]
Length = 698
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 136/239 (56%), Gaps = 33/239 (13%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ W L + ++K+I +GF EP IQ+ IP+A DIIGAAETGSGKTLAFG+
Sbjct: 133 DMSGWINLYISNTVLKAIADMGFTEPMEIQRLVIPSAIRDRFDIIGAAETGSGKTLAFGV 192
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
P+++RLL A + E E+ K +RALI+ PTREL +Q+ +H+ + K +
Sbjct: 193 PVVERLL-----ANQSFAESSEQ------KKSIRALILAPTRELVMQIRNHIHALLKYTS 241
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH--LVELHTLSFFVLDEA 209
+V IVGG+S +KQER+LK PE+V+ TPGRL LM+ E L + L V+DE
Sbjct: 242 FKVASIVGGLSLQKQERILKYVPEIVIATPGRLLALMTSAEADSCLSDWSNLQCLVVDET 301
Query: 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
DRMIE GHF +LQ I+D++ KK QT VFSAT+ +
Sbjct: 302 DRMIEKGHFEDLQHILDIIRKNTS--------------------KKLQTFVFSATLTYT 340
>gi|380015023|ref|XP_003691511.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX24-like [Apis florea]
Length = 778
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/352 (34%), Positives = 179/352 (50%), Gaps = 83/352 (23%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W L + ++K++ F +PTPIQ +PAA +DI+GAAETGSGKTLAFG+PI+
Sbjct: 146 WQILGVSTPIIKALKDQQFYQPTPIQALTLPAAILGHRDILGAAETGSGKTLAFGIPIIN 205
Query: 96 RLLE-------------EREKAGKMLEEKG--------------------EE-------- 114
+LE E+EK K++E KG EE
Sbjct: 206 GILELKNKQCDQLNVKSEKEK-NKIIENKGWICSENKIVEIDNSSSESDYEEDIDSVNEN 264
Query: 115 -----------------AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
E Y K L ALI+TPTRELA+Q+ DHL + AK +++++ +
Sbjct: 265 SIGCVRVINNIKFNETNTENYMEKP-LYALILTPTRELAIQIKDHLTKAAKYVDIKIAVV 323
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
+GGM+ KQER+L PE+V+ TPGRLWEL+ G HL ++ ++ + V+DE DRM+E GH
Sbjct: 324 LGGMAAVKQERILSKGPEIVIATPGRLWELIQYGNSHLCKVDSIKYLVIDETDRMLEKGH 383
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277
F+ELQ +++ + +NE + ++RQT VFSAT+ + D + L
Sbjct: 384 FQELQQLLEKI----NTNEK--------------RLRERQTFVFSATLTMVHDIPEYLXK 425
Query: 278 GSLKLKQSVNGL----NSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
K +S +E + E G++ N I+DLT S + L E I
Sbjct: 426 KKRKHIKSKIKKLTPDQKLEKIMELVGIK-NPKIIDLTKKSGITANLTECRI 476
>gi|312088074|ref|XP_003145719.1| hypothetical protein LOAG_10144 [Loa loa]
Length = 699
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 136/239 (56%), Gaps = 33/239 (13%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ W L + ++K+I +GF EP IQ+ IP+A DIIGAAETGSGKTLAFG+
Sbjct: 134 DMSGWINLYISNTVLKAIADMGFTEPMEIQRLVIPSAIRDRFDIIGAAETGSGKTLAFGV 193
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
P+++RLL A + E E+ K +RALI+ PTREL +Q+ +H+ + K +
Sbjct: 194 PVVERLL-----ANQSFAESSEQ------KKSIRALILAPTRELVMQIRNHIHALLKYTS 242
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH--LVELHTLSFFVLDEA 209
+V IVGG+S +KQER+LK PE+V+ TPGRL LM+ E L + L V+DE
Sbjct: 243 FKVASIVGGLSLQKQERILKYVPEIVIATPGRLLALMTSAEADSCLSDWSNLQCLVVDET 302
Query: 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
DRMIE GHF +LQ I+D++ KK QT VFSAT+ +
Sbjct: 303 DRMIEKGHFEDLQHILDIIRKNTS--------------------KKLQTFVFSATLTYT 341
>gi|159124341|gb|EDP49459.1| ATP dependent RNA helicase, putative [Aspergillus fumigatus A1163]
Length = 795
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 176/308 (57%), Gaps = 18/308 (5%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+E + + AW+ L L P ++ + ++ F PT +Q+ACIP +G D+IG A TGSG
Sbjct: 192 TEEDDGADVSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQIL-EGHDVIGKASTGSG 250
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KTLAFG+PI++ LE++ +E+ E + ALI++PTRELA Q++ H+
Sbjct: 251 KTLAFGIPILEHYLEKKRDDISAQKEQMSEKDSTPI-----ALILSPTRELAHQLSKHIG 305
Query: 145 EV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
E+ A G+N R+ + GG+S +KQ+RLL ++V+GTPGR+WE++S G+ + ++ +
Sbjct: 306 ELIAQAPGVNARIALLTGGLSVQKQQRLLSG-ADIVIGTPGRVWEILSTGQGLIRKMQQI 364
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
F V+DEADR++ GHF+E++ I++ L E S +RQTLVF
Sbjct: 365 KFLVVDEADRLLSEGHFKEVEQILNSLDRVEDGEVPDGE--DQASEEESDPSSERQTLVF 422
Query: 262 SATIALSADFRKKLKHGSLKLKQS--VNGLNSIETLSERAGMR-ANVAIVDLTNVSVLAN 318
SAT D ++KL G K + ++ S++ L ++ R +D+ +S +A+
Sbjct: 423 SAT--FHRDLQQKLA-GKRKWTRGDIMDKKESMDYLLQKLNFREEKPKFIDMNPISQMAD 479
Query: 319 KLEESFIE 326
L+E +E
Sbjct: 480 NLKEGIVE 487
>gi|70991861|ref|XP_750779.1| ATP dependent RNA helicase [Aspergillus fumigatus Af293]
gi|66848412|gb|EAL88741.1| ATP dependent RNA helicase, putative [Aspergillus fumigatus Af293]
Length = 795
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 176/308 (57%), Gaps = 18/308 (5%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+E + + AW+ L L P ++ + ++ F PT +Q+ACIP +G D+IG A TGSG
Sbjct: 192 TEEDDGADVSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQIL-EGHDVIGKASTGSG 250
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KTLAFG+PI++ LE++ +E+ E + ALI++PTRELA Q++ H+
Sbjct: 251 KTLAFGIPILEHYLEKKRDDISAQKEQMSEKDSTPI-----ALILSPTRELAHQLSKHIG 305
Query: 145 EV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
E+ A G+N R+ + GG+S +KQ+RLL ++V+GTPGR+WE++S G+ + ++ +
Sbjct: 306 ELIAQAPGVNARIALLTGGLSVQKQQRLLSG-ADIVIGTPGRVWEILSTGQGLIRKMQQI 364
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
F V+DEADR++ GHF+E++ I++ L E S +RQTLVF
Sbjct: 365 KFLVVDEADRLLSEGHFKEVEEILNSLDRVEDGEVPDGE--DQASEEESDPSSERQTLVF 422
Query: 262 SATIALSADFRKKLKHGSLKLKQS--VNGLNSIETLSERAGMR-ANVAIVDLTNVSVLAN 318
SAT D ++KL G K + ++ S++ L ++ R +D+ +S +A+
Sbjct: 423 SAT--FHRDLQQKLA-GKRKWTRGDIMDKKESMDYLLQKLNFREEKPKFIDMNPISQMAD 479
Query: 319 KLEESFIE 326
L+E +E
Sbjct: 480 NLKEGIVE 487
>gi|340938992|gb|EGS19614.1| hypothetical protein CTHT_0040930 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 767
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 175/303 (57%), Gaps = 29/303 (9%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
E + W L L P ++ I RL F +PTPIQ IP + G D+IG A TGSGKTL
Sbjct: 191 EDDVDLSEWVPLGLSPPVLSCIARLKFLKPTPIQARAIPEVIN-GHDVIGKAATGSGKTL 249
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
AFG+PI++ L + A E G++ H ALI++PTRELA Q+TDHLK++
Sbjct: 250 AFGIPIVEAWLSKIASA----ESSGQK--------HPIALILSPTRELAHQITDHLKQLC 297
Query: 148 KGINV--RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
G+ + + GG++ +KQER L+ + ++VVGTPGRLWE+MS + ++SF V
Sbjct: 298 AGLATAPYICSVTGGLAVQKQERQLQ-KADIVVGTPGRLWEVMSTSNAVMQSFRSISFLV 356
Query: 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+DEADR++++GHF+E + I+ L T G+ E+ + +S R++RQTLVFSAT
Sbjct: 357 VDEADRILKDGHFKEAEKILLALDRT---VPGEEEENDSDDEKTS--RRRRQTLVFSAT- 410
Query: 266 ALSADFRKKLKHG-SLKLKQSVNG-LNSIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
F K L+ + K + ++ G S+E L +R R + +D ++ +A L+E
Sbjct: 411 -----FNKALQQKLAGKARYNLMGETESLEYLLKRLNFREHPKFIDTNPITQMAENLKEG 465
Query: 324 FIE 326
I+
Sbjct: 466 LIQ 468
>gi|145244675|ref|XP_001394643.1| ATP-dependent RNA helicase mak5 [Aspergillus niger CBS 513.88]
gi|143345221|sp|A2QWW0.1|MAK5_ASPNC RecName: Full=ATP-dependent RNA helicase mak5
gi|134079333|emb|CAK96962.1| unnamed protein product [Aspergillus niger]
gi|350631401|gb|EHA19772.1| hypothetical protein ASPNIDRAFT_178721 [Aspergillus niger ATCC
1015]
Length = 766
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 174/300 (58%), Gaps = 24/300 (8%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW L L P ++ S+ ++ F PT +QK+CIP G D+IG A TGSGKTLAFG+PI+
Sbjct: 193 AWESLGLSPEILTSLSKMKFTTPTLVQKSCIPQIL-DGHDVIGKASTGSGKTLAFGIPIL 251
Query: 95 QRLLEERE---KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA---K 148
+ LE+R +AGK EEK ++ AP ALI++PTRELA Q+ H+ E+A
Sbjct: 252 EHYLEKRRQDLRAGK--EEKKKDT---API----ALIMSPTRELAHQLAKHIGELALHAP 302
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
G N R+ + GG+S +KQ+R+L A ++V+GTPGR+WE++S G+ + ++ + F V+DE
Sbjct: 303 GSNARIALLTGGLSVQKQQRVL-AGADIVIGTPGRVWEVLSSGQGLIRKMSEIKFLVIDE 361
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++ GHF+E + I+ L N G E + R +RQTLVFSAT
Sbjct: 362 ADRLLSEGHFKEAEEILGALDRVEEGNFGGEESEDEEKEDA---RSERQTLVFSAT--FH 416
Query: 269 ADFRKKLKHGSLKLKQSV-NGLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
D ++KL + + + S+E L ++ R +D+ VS +A L+E +E
Sbjct: 417 RDLQQKLAGKARWTGGDIMSNKESMEYLLQKLKFREEKPKFIDVNPVSQMAEGLKEGIVE 476
>gi|258575119|ref|XP_002541741.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237902007|gb|EEP76408.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 777
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 171/315 (54%), Gaps = 24/315 (7%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
L E E T+ AW+ L L L S+ RL F PTPIQ ACIPA QG D+IG A TG
Sbjct: 176 LQDEVEEDTDVSAWDPLGLRAELQTSLARLKFCSPTPIQSACIPAVL-QGHDVIGKASTG 234
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK-YAPKGHLRALIITPTRELALQVTD 141
SGKTLAFG+PI++ L R G+ E+ AP ALI++PTRELA Q+
Sbjct: 235 SGKTLAFGIPIVEHYLG-RYPTGQAPASSNEDGTSGKAPI----ALILSPTRELAHQLNK 289
Query: 142 HLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
HL ++ A + R+ + GG+S KQ+RLL A ++++ TPGRLWE++ L +L
Sbjct: 290 HLTDLISNAPHTSARIASVTGGLSIYKQQRLL-ADADIIIATPGRLWEVIGSMPGFLTKL 348
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEG-QSEQTQTCVTVSSLQRKKRQ 257
+ F V+DEADR++ GHF+E + I++ L + EG + ++++RQ
Sbjct: 349 KRIKFLVIDEADRLLSEGHFKEAEEIVNALDRVEKTEEGYEEGSEPGSPEEEEEEQRQRQ 408
Query: 258 TLVFSATIALSADFRKKLKH---GSLKLKQS--VNGLNSIETLSERAGMR-ANVAIVDLT 311
TLVFSAT F K L+ G ++ + ++ S+E L + R +D+
Sbjct: 409 TLVFSAT------FHKGLQQKLSGKIRYRNDDLLDKKESMEYLLRKLNFREERPKFIDVN 462
Query: 312 NVSVLANKLEESFIE 326
+S +A L+E ++
Sbjct: 463 PISQMAENLKEGLVQ 477
>gi|339238663|ref|XP_003380886.1| ATP-dependent RNA helicase DDX24 [Trichinella spiralis]
gi|316976157|gb|EFV59493.1| ATP-dependent RNA helicase DDX24 [Trichinella spiralis]
Length = 654
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 155/288 (53%), Gaps = 36/288 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W EL + ++ ++ L + EPTPIQ C+P A DI+GAAETGSGKTLAFG+P++
Sbjct: 96 WQELFVPEEILHALDDLEYFEPTPIQALCLPPAIRDRLDILGAAETGSGKTLAFGIPVIA 155
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
LL E + + H ALI+TPTRELA+Q+ DHL + K N+++
Sbjct: 156 GLLSENSDS----------------QIHPSALILTPTRELAIQIKDHLSSIMKYTNLKLT 199
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
GG+S +KQ+RLLK P++V+ TPGRLW L+S + L LH + + V+DE DRM E
Sbjct: 200 TATGGLSVQKQQRLLKDDPDIVIATPGRLWALISEDCEGLENLHKIKYLVIDEIDRMAEK 259
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275
+F E +++ L NG +KRQTLVFSAT++ +L
Sbjct: 260 QNFAEFSQLLEFL---NGDENAI---------------RKRQTLVFSATLSFVHPMPNRL 301
Query: 276 KHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
S + ++ IE L MR ++DL++ L++ L ES
Sbjct: 302 --LSKANAKPLSPEEKIENLISFLSMRPKRKVIDLSSKHGLSSSLVES 347
>gi|91207158|sp|Q4WMS3.2|MAK5_ASPFU RecName: Full=ATP-dependent RNA helicase mak5
Length = 777
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 176/308 (57%), Gaps = 18/308 (5%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+E + + AW+ L L P ++ + ++ F PT +Q+ACIP +G D+IG A TGSG
Sbjct: 192 TEEDDGADVSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQIL-EGHDVIGKASTGSG 250
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KTLAFG+PI++ LE++ +E+ E + ALI++PTRELA Q++ H+
Sbjct: 251 KTLAFGIPILEHYLEKKRDDISAQKEQMSEKDSTPI-----ALILSPTRELAHQLSKHIG 305
Query: 145 EV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
E+ A G+N R+ + GG+S +KQ+RLL ++V+GTPGR+WE++S G+ + ++ +
Sbjct: 306 ELIAQAPGVNARIALLTGGLSVQKQQRLLSG-ADIVIGTPGRVWEILSTGQGLIRKMQQI 364
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
F V+DEADR++ GHF+E++ I++ L E S +RQTLVF
Sbjct: 365 KFLVVDEADRLLSEGHFKEVEEILNSLDRVEDGEVPDGE--DQASEEESDPSSERQTLVF 422
Query: 262 SATIALSADFRKKLKHGSLKLKQS--VNGLNSIETLSERAGMR-ANVAIVDLTNVSVLAN 318
SAT D ++KL G K + ++ S++ L ++ R +D+ +S +A+
Sbjct: 423 SAT--FHRDLQQKLA-GKRKWTRGDIMDKKESMDYLLQKLNFREEKPKFIDMNPISQMAD 479
Query: 319 KLEESFIE 326
L+E +E
Sbjct: 480 NLKEGIVE 487
>gi|170595141|ref|XP_001902262.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158590158|gb|EDP28893.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 668
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/283 (39%), Positives = 153/283 (54%), Gaps = 37/283 (13%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ W L + ++K+I +GF EPT IQK IP+A DIIGAAETGSGKTLAFG+
Sbjct: 149 DMSGWINLYISNAVLKAIADMGFTEPTEIQKLVIPSAVRDRFDIIGAAETGSGKTLAFGV 208
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
P+++ LL A + E E+ K +RALI+ PTREL +Q+ +H+ + K
Sbjct: 209 PVVEHLL-----ANQSFLESSEQ------KKGIRALILAPTRELVMQIRNHIDALLKYTP 257
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH--LVELHTLSFFVLDEA 209
+V IVGG+S +KQER+LK PE+V+ TPGRL LM+ E L + L V+DE
Sbjct: 258 FKVASIVGGLSLQKQERILKYVPEIVIATPGRLLALMTSAEADSCLSDWSHLQCLVVDET 317
Query: 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269
DRMIE GHF +LQ I+D L KK QT VFSAT+ +
Sbjct: 318 DRMIEKGHFEDLQHILDTLRKNTS--------------------KKLQTFVFSATLTYTH 357
Query: 270 DFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANV-AIVDLT 311
K KHG + + ++ I L E G+R I+D+T
Sbjct: 358 PASK--KHGDVNADK-IDTDGKISRLIEITGIRKEKHRIIDIT 397
>gi|189201219|ref|XP_001936946.1| ATP-dependent RNA helicase MAK5 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984045|gb|EDU49533.1| ATP-dependent RNA helicase MAK5 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 778
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/326 (37%), Positives = 179/326 (54%), Gaps = 40/326 (12%)
Query: 7 GTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIP 66
G +++N PDD +E++ AW+EL L ++ ++ +L F +PT IQK+ IP
Sbjct: 192 GAFDILANQPDDDDEDV----------SAWDELELSEEMLGALAKLKFSKPTTIQKSTIP 241
Query: 67 AAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126
G+D+IG A TGSGKTLAFG+PI++ L R A K E E P A
Sbjct: 242 EILA-GRDVIGKASTGSGKTLAFGIPIVESYLASRSSASK-------EPEDKMPI----A 289
Query: 127 LIITPTRELALQVTDHLKEV-AKGI--NVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
LII PTRELA Q+ HL + AKG + I GG+S +KQ R L+ + ++VVGTPGR
Sbjct: 290 LIIAPTRELAHQINAHLIALCAKGDFDPPYIASITGGLSVQKQRRQLE-KADIVVGTPGR 348
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
LWE++S G+ L + + F V+DEADR++ GHF+E+ I+ +L + ++E +
Sbjct: 349 LWEVISDGQGLLRKFKQIKFLVVDEADRLLSEGHFKEMGEILKVLEPDDVTDENAESDEK 408
Query: 244 TCVTVSSLQRKKRQTLVFSATIA--LSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGM 301
+ KRQTLVFSAT L K+K G L ++ S+E L ++
Sbjct: 409 EEI--------KRQTLVFSATFGKDLQRKLAGKVKGGGSDL---MSQQQSMEYLLKKLQF 457
Query: 302 RANVAI-VDLTNVSVLANKLEESFIE 326
R + +D +S +A+KL+E IE
Sbjct: 458 REEKPVFIDANPMSQMASKLQEGLIE 483
>gi|336388501|gb|EGO29645.1| ATP-dependent RNA helicase [Serpula lacrymans var. lacrymans S7.9]
Length = 754
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 188/369 (50%), Gaps = 72/369 (19%)
Query: 14 NGPDDAEEELVSEAEI---STEFDA------WNELRLHPLLMKSIYRLGFKEPTPIQKAC 64
+ P+D E + S ++ S FD+ W+ LHP L++ ++ GF PTPIQ
Sbjct: 100 DTPEDIEAGIESTTDVPLSSISFDSKLLLPNWHSYSLHPHLLQILHHQGFTTPTPIQSKS 159
Query: 65 IPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE-REKAGKMLEEKGEEAEKYAPKGH 123
+P A +G+DI+G AETGSGKTLA+GLPI+ LL R + K+ K
Sbjct: 160 LPKAM-EGRDIVGVAETGSGKTLAYGLPILHHLLSRSRHPSSKV-------------KRQ 205
Query: 124 LRALIITPTRELALQVTDHL--------------------------KEVAKGINV----- 152
++AL++ PTRELALQV+DHL K+ +KG NV
Sbjct: 206 VQALVLAPTRELALQVSDHLNMFARSIEAPIKEETLDVELSETQQLKDKSKGKNVVSGTA 265
Query: 153 ---------RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
+ IVGGMS +KQ R++ ++++ TPGRLW+++ + +L +L +
Sbjct: 266 KTFSKPPLVSIAAIVGGMSAQKQRRIIDRGVDILIATPGRLWDILEEDDSLAKQLASLRY 325
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTNGSN--EGQSEQTQTCVTVSSLQRKKRQTLVF 261
+LDEADRM+ENGHF EL +I+ + + + E + E T V + QT VF
Sbjct: 326 LILDEADRMVENGHFAELDNILRLTLRLSREDVIEPEFETQDTEVQAHAETEDALQTFVF 385
Query: 262 SATIALSADFRKKLKHG---SLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLA 317
SAT LS D ++ LK G + K +++E L R R AN ++D++ +
Sbjct: 386 SAT--LSKDLQRDLKKGYRPRIGKKGRSKPASTLEDLVLRLDFRDANPEVIDISPEGGVV 443
Query: 318 NKLEESFIE 326
+ L+ES IE
Sbjct: 444 SGLQESKIE 452
>gi|315040650|ref|XP_003169702.1| ATP-dependent RNA helicase MAK5 [Arthroderma gypseum CBS 118893]
gi|311345664|gb|EFR04867.1| ATP-dependent RNA helicase MAK5 [Arthroderma gypseum CBS 118893]
Length = 743
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 175/314 (55%), Gaps = 29/314 (9%)
Query: 22 ELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAET 81
E V EA++ + AW+ L L L S+ RL F +PTPIQKA IP G+D+IG A T
Sbjct: 155 EAVEEADV--DVSAWDTLDLRSELQTSLSRLKFAQPTPIQKAAIPEIL-AGRDVIGKAAT 211
Query: 82 GSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTD 141
GSGKTLAFGLPI+Q LL+ +E+ + K ALI++PTRELA Q+
Sbjct: 212 GSGKTLAFGLPILQYLLDRQEQHPSTPSTSSKSHGKTP-----TALILSPTRELAHQLVK 266
Query: 142 HLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
HLKEV A ++ + I GG+S KQ+R L A +++VGTPGRLW+++S K L +L
Sbjct: 267 HLKEVTSSAPNVDAYIASITGGLSVHKQQRQL-AEADVIVGTPGRLWDMVSSTPKILTKL 325
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 258
+ F V+DEADR++ GHF+E+ ++ L S+E + ++ +RQT
Sbjct: 326 RLIKFLVVDEADRLLSEGHFKEVGELLSALDKARTSDEDIDDDSEEEDETV-----ERQT 380
Query: 259 LVFSATIALSADFRKKLKHGSLKLKQS-----VNGLNSIETLSERAGMRANVA-IVDLTN 312
LVFSAT F+K L+ K S ++ S+E L ++ R +D+
Sbjct: 381 LVFSAT------FQKGLQQKLAKRDNSFHDNLLDKKESMEYLLKKLRFRDEKPRFIDVNP 434
Query: 313 VSVLANKLEESFIE 326
+S +A+ L+E IE
Sbjct: 435 ISQMADNLKEGIIE 448
>gi|378731664|gb|EHY58123.1| hypothetical protein HMPREF1120_06141 [Exophiala dermatitidis
NIH/UT8656]
Length = 733
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 167/309 (54%), Gaps = 34/309 (11%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L L P+ + + RLGF PTPIQKA +P QG D+IG A TGSGKTLAFG+
Sbjct: 168 DVSAWKDLGLSPITLSQLSRLGFSNPTPIQKAAVPVIL-QGHDVIGKAVTGSGKTLAFGI 226
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
PI + L E AG K K L ALI+ PTRELALQ+ HL E+ G+
Sbjct: 227 PIFEAWLAT-ENAGFKGPAK--------TKDSLLALILAPTRELALQLNRHLNELCIGLE 277
Query: 152 --VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH-----LVE-LHTLSF 203
RV + GG+S KQ+R L + ++VV TPGRLWE+M+ + L E L + F
Sbjct: 278 NAPRVCAVTGGLSVYKQQRQL-STADIVVATPGRLWEVMNDSATNYDTDALAERLKKIQF 336
Query: 204 FVLDEADRMIENGHFRELQSIIDMLP---MTNGSNEGQSEQTQTCVTVSSLQRKKRQTLV 260
V+DEADR++ GHF+E++SI+D L + + E S+++ + RQTLV
Sbjct: 337 LVVDEADRLLSEGHFKEVESILDALDREVIDEDAPEAPSKES---------TKSHRQTLV 387
Query: 261 FSATI--ALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLA 317
FSAT L K K G + + ++ S+E L + R VD+ S +A
Sbjct: 388 FSATFHKGLQKKLTSKNKSGWRQSTELLDNQQSMEYLLRKLSFREEKPTFVDVNPASQMA 447
Query: 318 NKLEESFIE 326
+ L ES +E
Sbjct: 448 SALSESIVE 456
>gi|307201303|gb|EFN81150.1| ATP-dependent RNA helicase DDX24 [Harpegnathos saltator]
Length = 640
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 149/286 (52%), Gaps = 62/286 (21%)
Query: 30 STEFD--AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
STEF+ AW+ + + +++K++ F PT IQ +PAA +DI+GAAETGSGKTL
Sbjct: 11 STEFNTAAWSSMGVPSVIIKALADQNFYTPTIIQAKTLPAALLGYRDILGAAETGSGKTL 70
Query: 88 AFGLPIMQRLLE-EREKAGKMLEEKGEEAE------------------------------ 116
AFG+PI++ +LE + +KA + +EK E
Sbjct: 71 AFGIPIIKGILELKSQKAKTIADEKSTETSENEERTCHEVETEDNSTNSDSEDENLSEYE 130
Query: 117 -----------KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEK 165
+ P L ALI+ PTREL +Q+ HL + K ++++ + GG++ K
Sbjct: 131 NCINVIELDNCQNIPSKPLYALILAPTRELVVQIKQHLTQAVKYTDIKIAAVFGGLAAVK 190
Query: 166 QERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 225
QERLL PE+V+ TPGRLWEL+ G HL ++ ++ F +DE DRM+E GHF+EL I+
Sbjct: 191 QERLLNQGPEIVIATPGRLWELIQQGNPHLSQVDSIRFLAIDETDRMLEKGHFQELHDIL 250
Query: 226 DMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
+ V ++ KKRQT VFSAT+ + D
Sbjct: 251 QK------------------INVDPIKLKKRQTFVFSATLTMVHDL 278
>gi|327259240|ref|XP_003214446.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Anolis
carolinensis]
Length = 799
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 114/359 (31%), Positives = 173/359 (48%), Gaps = 79/359 (22%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
L + ++ AW L + +++++ LGF PTPIQ +P+A D++GAAETG
Sbjct: 179 LSASSDQKANISAWKGLFVPKPVLQALSELGFSAPTPIQALALPSAIRDSMDVLGAAETG 238
Query: 83 SGKTLAFGLPIMQRLLEEREKAGK------MLEEKGEEAEKYA----------------- 119
SGKTLAF +P++ +L+ + G LE+ G+ E+ +
Sbjct: 239 SGKTLAFAIPMIHSILQWYKSRGLPKGSKIQLEDGGDSEEELSKEEASEDIGGLSSAEAN 298
Query: 120 -----------------------PK--------GHLRALIITPTRELALQVTDHLKEVAK 148
PK L L++TPTRELA+QV H+ V +
Sbjct: 299 CAAISSVESLVTLCEKASEDGDHPKHDTVGERSNPLLGLVLTPTRELAVQVKHHIDAVTR 358
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
++ +VGGM+ +KQ+R+LK +PE+V+ TPGRLWEL+ + HL L L V+DE
Sbjct: 359 YTGIKTANLVGGMAPQKQQRILKRKPEIVIATPGRLWELIQEKQPHLSSLKQLRCLVIDE 418
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL- 267
ADRM+E GHF EL +++ML SS KRQT VFSAT+ L
Sbjct: 419 ADRMVEKGHFLELSQLLEMLN-------------------SSQYNPKRQTFVFSATLTLI 459
Query: 268 -SADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
A R K ++++ + +E L ++ GM++ ++DLT L E+ I
Sbjct: 460 HQAPARVFQKKNAIRIDKKTK----LELLMQKVGMKSKPKVIDLTRKEATVETLTETRI 514
>gi|119193909|ref|XP_001247558.1| hypothetical protein CIMG_01329 [Coccidioides immitis RS]
gi|118574275|sp|Q1E7Y4.1|MAK5_COCIM RecName: Full=ATP-dependent RNA helicase MAK5
gi|392863201|gb|EAS36075.2| ATP-dependent RNA helicase MAK5 [Coccidioides immitis RS]
Length = 783
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 171/316 (54%), Gaps = 25/316 (7%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
L E E + AW+ L L L S+ RL F PTPIQ ACIPA QG D+IG A TG
Sbjct: 179 LQDEVEEDVDVSAWDSLDLSAELQTSLGRLKFSSPTPIQSACIPAVL-QGHDVIGKASTG 237
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142
SGKTLAFG+PI++ L + + G+ E P ALI++PTRELA Q+ H
Sbjct: 238 SGKTLAFGIPIVEYFLG-KYRGGRAPTASEERESTKEP----MALILSPTRELAHQLNKH 292
Query: 143 LKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 199
L ++ A VR+ + GG+S KQ+RLL A ++++ TPGRLWE++ L +L
Sbjct: 293 LTDLVNHAPNTQVRIATVTGGLSIYKQQRLL-ADADIIIATPGRLWEVVGSMTGFLSKLK 351
Query: 200 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK---R 256
+ F V+DEADR++ GHF+E++ I++ + + E E+++ + KK R
Sbjct: 352 KIRFLVIDEADRLLSEGHFKEVEEILNAIDKVEITEEAYGERSEREPEPEPDEEKKAEPR 411
Query: 257 QTLVFSATIALSADFRKKLKH---GSLKLKQS--VNGLNSIETLSERAGMR-ANVAIVDL 310
QTLVFSAT F K L+ G ++ + ++ S+E L + R +D+
Sbjct: 412 QTLVFSAT------FHKGLQQKLSGKIRYRNDDLLDKKESMEYLLRKLNFREERPKFIDV 465
Query: 311 TNVSVLANKLEESFIE 326
+S +A L+E ++
Sbjct: 466 NPISQMAQNLKEGLVQ 481
>gi|317142764|ref|XP_001819080.2| ATP-dependent RNA helicase mak5 [Aspergillus oryzae RIB40]
gi|391863775|gb|EIT73074.1| RNA helicase [Aspergillus oryzae 3.042]
Length = 769
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 172/311 (55%), Gaps = 23/311 (7%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
L E + + AW L L P ++ I ++ F PT +QKACIP G+D+IG A TG
Sbjct: 185 LQEEEDDGADVSAWESLGLSPEILAGISKMKFTTPTSVQKACIPPIL-DGRDVIGKASTG 243
Query: 83 SGKTLAFGLPIMQRLLEE-REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTD 141
SGKTLAFG+PI++ LE+ R K +K E + P AL+++PTRELA Q+
Sbjct: 244 SGKTLAFGIPILEYYLEKLRSKT-----QKDSEKTETTPI----ALVLSPTRELAHQLAK 294
Query: 142 HLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
H+ EV A G+N R+ + GG+S +KQ+R+L ++V+GTPGR+WE++S G + ++
Sbjct: 295 HIGEVVSHAPGVNARIALLTGGLSLQKQQRVL-TNADIVIGTPGRVWEVLSSGHGLIRKM 353
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQ 257
+ F V+DEADR++ GHF+E I+ L +G+ + + L K RQ
Sbjct: 354 QAIKFLVIDEADRLLSEGHFKEAHEILAALDRV---VDGEFPDESSDESDDELDPKSGRQ 410
Query: 258 TLVFSATIALSADFRKKLK-HGSLKLKQSVNGLNSIETLSERAGMRANVA-IVDLTNVSV 315
TLVFSAT D ++KL G ++ S+E L ++ R +D+ VS
Sbjct: 411 TLVFSAT--FHRDLQQKLAGKGKWTGGDIMSQKESMEYLLQKLNFREEKPRFIDVNPVSQ 468
Query: 316 LANKLEESFIE 326
+A L+E +E
Sbjct: 469 MAENLKEGIVE 479
>gi|238501664|ref|XP_002382066.1| ATP dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
gi|220692303|gb|EED48650.1| ATP dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
Length = 769
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 172/311 (55%), Gaps = 23/311 (7%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
L E + + AW L L P ++ I ++ F PT +QKACIP G+D+IG A TG
Sbjct: 185 LQEEEDDGADVSAWESLGLSPEILAGISKMKFTTPTSVQKACIPPIL-DGRDVIGKASTG 243
Query: 83 SGKTLAFGLPIMQRLLEE-REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTD 141
SGKTLAFG+PI++ LE+ R K +K E + P AL+++PTRELA Q+
Sbjct: 244 SGKTLAFGIPILEYYLEKLRSKT-----QKDSEKTETTPI----ALVLSPTRELAHQLAK 294
Query: 142 HLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
H+ EV A G+N R+ + GG+S +KQ+R+L ++V+GTPGR+WE++S G + ++
Sbjct: 295 HIGEVVSHAPGVNARIALLTGGLSLQKQQRVL-TNADIVIGTPGRVWEVLSSGHGLIRKM 353
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQ 257
+ F V+DEADR++ GHF+E I+ L +G+ + + L K RQ
Sbjct: 354 QAIKFLVIDEADRLLSEGHFKEAHEILAALDRV---VDGEFPDESSDESDDELDPKSGRQ 410
Query: 258 TLVFSATIALSADFRKKLK-HGSLKLKQSVNGLNSIETLSERAGMRANVA-IVDLTNVSV 315
TLVFSAT D ++KL G ++ S+E L ++ R +D+ VS
Sbjct: 411 TLVFSAT--FHRDLQQKLAGKGKWTGGDIMSQKESMEYLLQKLNFREEKPRFIDVNPVSQ 468
Query: 316 LANKLEESFIE 326
+A L+E +E
Sbjct: 469 MAENLKEGIVE 479
>gi|312381486|gb|EFR27227.1| hypothetical protein AND_06199 [Anopheles darlingi]
Length = 799
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 176/343 (51%), Gaps = 71/343 (20%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+E S E+ W EL + ++K+I GFK PT IQ+ +PAA +D++GAAETGSG
Sbjct: 212 AEGYSSVEYIRWIELGVSEPIVKAIAEKGFKTPTEIQEKSLPAAIFGHRDLLGAAETGSG 271
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAE---------------------------- 116
KTLAFGLP+++ + + ++ ++ + +E+E
Sbjct: 272 KTLAFGLPMLEGIRKLKQLNEPIIYDNEDESETVHSDHELTPPPEDYELSPEDQKVFAMG 331
Query: 117 ------KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL 170
P L LI+TPTRELALQ+ DHLK V K ++ + + KQER+L
Sbjct: 332 SSKKKQPMDPTKPLYGLILTPTRELALQINDHLKSVTKYTDINIATVFAV----KQERML 387
Query: 171 KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230
+ PE+V+ TPGRLWEL+ G +HL ++ + F V+DE DRM+E GHF EL+ +++++
Sbjct: 388 RKCPEIVIATPGRLWELIQAGNQHLAKVMHIRFLVIDETDRMLERGHFEELKQLLELI-- 445
Query: 231 TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLK------- 283
N + E +KKR+ +FSAT+ + D + LK K K
Sbjct: 446 -NTNEEA---------------KKKRRNYIFSATLTMDHDLPEHLKKNPKKAKKVMKETP 489
Query: 284 -QSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
Q +N L I+T+ GM N IVDLT A L ES I
Sbjct: 490 GQRLNNL--IQTI----GM-TNPKIVDLTKEQATAQTLTESRI 525
>gi|91207159|sp|Q2UMY7.1|MAK5_ASPOR RecName: Full=ATP-dependent RNA helicase mak5
gi|83766938|dbj|BAE57078.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 757
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 172/311 (55%), Gaps = 23/311 (7%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
L E + + AW L L P ++ I ++ F PT +QKACIP G+D+IG A TG
Sbjct: 173 LQEEEDDGADVSAWESLGLSPEILAGISKMKFTTPTSVQKACIPPIL-DGRDVIGKASTG 231
Query: 83 SGKTLAFGLPIMQRLLEE-REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTD 141
SGKTLAFG+PI++ LE+ R K +K E + P AL+++PTRELA Q+
Sbjct: 232 SGKTLAFGIPILEYYLEKLRSKT-----QKDSEKTETTPI----ALVLSPTRELAHQLAK 282
Query: 142 HLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
H+ EV A G+N R+ + GG+S +KQ+R+L ++V+GTPGR+WE++S G + ++
Sbjct: 283 HIGEVVSHAPGVNARIALLTGGLSLQKQQRVL-TNADIVIGTPGRVWEVLSSGHGLIRKM 341
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQ 257
+ F V+DEADR++ GHF+E I+ L +G+ + + L K RQ
Sbjct: 342 QAIKFLVIDEADRLLSEGHFKEAHEILAALDRV---VDGEFPDESSDESDDELDPKSGRQ 398
Query: 258 TLVFSATIALSADFRKKLK-HGSLKLKQSVNGLNSIETLSERAGMRANVA-IVDLTNVSV 315
TLVFSAT D ++KL G ++ S+E L ++ R +D+ VS
Sbjct: 399 TLVFSAT--FHRDLQQKLAGKGKWTGGDIMSQKESMEYLLQKLNFREEKPRFIDVNPVSQ 456
Query: 316 LANKLEESFIE 326
+A L+E +E
Sbjct: 457 MAENLKEGIVE 467
>gi|67522587|ref|XP_659354.1| hypothetical protein AN1750.2 [Aspergillus nidulans FGSC A4]
gi|74657524|sp|Q5BCI0.1|MAK5_EMENI RecName: Full=ATP-dependent RNA helicase mak5
gi|40744880|gb|EAA64036.1| hypothetical protein AN1750.2 [Aspergillus nidulans FGSC A4]
gi|259487094|tpe|CBF85492.1| TPA: ATP-dependent RNA helicase mak5 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5BCI0] [Aspergillus
nidulans FGSC A4]
Length = 770
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 170/298 (57%), Gaps = 21/298 (7%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW L L P + S+ +L F PT +QK+CIP G D+IG A TGSGKTLAFGLPI+
Sbjct: 198 AWEPLGLSPETLTSLSKLKFSTPTSVQKSCIPPIL-DGHDVIGKASTGSGKTLAFGLPIL 256
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV---AKGIN 151
+ LE RE+ + E EE EK ALI++PTRELA Q+ H+ + A G+N
Sbjct: 257 EHYLE-RERRKTIDSE--EEKEKIPI-----ALILSPTRELAHQLQKHIYGLISNAPGVN 308
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
R + GG+S +KQ+RLL+ ++V+GTPGR+WE++ G+ + + + F V+DEADR
Sbjct: 309 ARTALLTGGLSVQKQQRLLET-ADIVIGTPGRVWEVLRTGQGLIRRMQGIKFLVIDEADR 367
Query: 212 MIENGHFRELQSIIDMLP-MTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
++ GHF+E++ I+ L + +G + + + V ++ RQTLVFSAT D
Sbjct: 368 LLSEGHFKEVEDILSSLDRVEDGGPPDEEDDSSEENVVPGVE---RQTLVFSAT--FHRD 422
Query: 271 FRKKLK-HGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
++KL G +N S+E L ++ R +D+ VS +A L+E +E
Sbjct: 423 LQQKLAGKGKWTGGDIMNKKESMEYLLQKLNFREEKPKFIDVNPVSQMAEGLKEGIVE 480
>gi|303311697|ref|XP_003065860.1| ATP-dependent RNA helicase MAK5, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240105522|gb|EER23715.1| ATP-dependent RNA helicase MAK5, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 783
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 171/316 (54%), Gaps = 25/316 (7%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
L E E + AW+ L L L S+ RL F PTPIQ ACIPA QG D+IG A TG
Sbjct: 179 LQDEVEEDVDVSAWDSLDLSAELQTSLGRLKFSFPTPIQSACIPAVL-QGHDVIGKASTG 237
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142
SGKTLAFG+PI++ L + + G+ E P ALI++PTRELA Q+ H
Sbjct: 238 SGKTLAFGIPIVEYFLG-KYRGGRAPTASEESESTKEPM----ALILSPTRELAHQLNKH 292
Query: 143 LKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 199
L ++ A VR+ + GG+S KQ+RLL A ++++ TPGRLWE++ L +L
Sbjct: 293 LTDLVNHAPNTQVRIATVTGGLSIYKQQRLL-ADADIIIATPGRLWEVVGSMTGFLSKLK 351
Query: 200 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK---R 256
+ F V+DEADR++ GHF+E++ I++ + + E E+++ + KK R
Sbjct: 352 KIRFLVIDEADRLLSEGHFKEVEEILNAIDKVEITEEAYGERSEREPEPEPDEEKKAEPR 411
Query: 257 QTLVFSATIALSADFRKKLKH---GSLKLKQS--VNGLNSIETLSERAGMR-ANVAIVDL 310
QTLVFSAT F K L+ G ++ + ++ S+E L + R +D+
Sbjct: 412 QTLVFSAT------FHKGLQQKLSGKIRYRNDDLLDKKESMEYLLRKLNFREERPKFIDV 465
Query: 311 TNVSVLANKLEESFIE 326
+S +A L+E ++
Sbjct: 466 NPISQMAENLKEGLVQ 481
>gi|226288117|gb|EEH43630.1| ATP-dependent RNA helicase MAK5 [Paracoccidioides brasiliensis
Pb18]
Length = 772
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 177/322 (54%), Gaps = 32/322 (9%)
Query: 14 NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
N DD E+ VS AW L + L S+ +L F +PTPIQ ACIP A G
Sbjct: 183 NEEDDQEDVDVS---------AWEPLGISAELQTSLAKLKFAKPTPIQSACIPVIA-AGH 232
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133
D++G A TGSGKTLAF +PI++ LE + ++ G ++ + P ALI++PTR
Sbjct: 233 DVVGKAPTGSGKTLAFVIPILEYHLENNRD--EPIQNTGSDSSRKHPI----ALILSPTR 286
Query: 134 ELALQVTDHLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
ELA Q++ HL A IN R+ + GG+S +KQ RLL A ++V+GTPGRLW+++S
Sbjct: 287 ELAHQISKHLTAFISNAPNINARIALLTGGLSVQKQHRLL-ANADIVIGTPGRLWDVISN 345
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
G+ + + ++ F V+DEADR++ GHF+E++ I+ L ++ + + + ++
Sbjct: 346 GQGLIRKFQSIKFLVVDEADRLLSEGHFKEVEEILTALDRKEINDGVEESDSDSESERAN 405
Query: 251 LQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG-----LNSIETLSERAGMR-AN 304
++ RQTLVFSAT F + L+ + ++G S+E L E+ R
Sbjct: 406 IKSFPRQTLVFSAT------FHRGLQQKLAGKSRFIDGGLLDNKESMEYLLEKLNFREEK 459
Query: 305 VAIVDLTNVSVLANKLEESFIE 326
+D+ VS +A L+E +E
Sbjct: 460 PKFIDVNPVSQMAENLKEGLVE 481
>gi|320039765|gb|EFW21699.1| ATP-dependent RNA helicase MAK5 [Coccidioides posadasii str.
Silveira]
Length = 783
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 171/316 (54%), Gaps = 25/316 (7%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
L E E + AW+ L L L S+ RL F PTPIQ ACIPA QG D+IG A TG
Sbjct: 179 LQDEVEEDVDVSAWDSLDLSAELQTSLGRLKFSFPTPIQSACIPAVL-QGHDVIGKASTG 237
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142
SGKTLAFG+PI++ L + + G+ E P ALI++PTRELA Q+ H
Sbjct: 238 SGKTLAFGIPIVEYFLG-KYRGGRAPTASEESESTKEPM----ALILSPTRELAHQLNKH 292
Query: 143 LKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 199
L ++ A VR+ + GG+S KQ+RLL A ++++ TPGRLWE++ L +L
Sbjct: 293 LTDLVNHAPNTQVRIATVTGGLSIYKQQRLL-ADADIIIATPGRLWEVVGSMTGFLSKLK 351
Query: 200 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK---R 256
+ F V+DEADR++ GHF+E++ I++ + + E E+++ + KK R
Sbjct: 352 KIRFLVIDEADRLLSEGHFKEVEEILNAIDKVEITEEAYGERSEREPEPEPDEEKKAEPR 411
Query: 257 QTLVFSATIALSADFRKKLKH---GSLKLKQS--VNGLNSIETLSERAGMR-ANVAIVDL 310
QTLVFSAT F K L+ G ++ + ++ S+E L + R +D+
Sbjct: 412 QTLVFSAT------FHKGLQQKLSGKIRYRNDDLLDKKESMEYLLRKLNFREERPKFIDV 465
Query: 311 TNVSVLANKLEESFIE 326
+S +A L+E ++
Sbjct: 466 NPISQMAENLKEGLVQ 481
>gi|325096020|gb|EGC49330.1| ATP-dependent RNA helicase MAK5 [Ajellomyces capsulatus H88]
Length = 770
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 30/302 (9%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+ L + + S+ +L F +PTPIQ ACIP A G D++G A TGSGKTLAFG+PI++
Sbjct: 189 WDPLDISAEIQTSLSKLRFAKPTPIQTACIPLIA-SGHDVVGKASTGSGKTLAFGIPILE 247
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV---AKGINV 152
L+ R + + GE + KY ALI++PTRELA Q++ H+ + A IN
Sbjct: 248 YYLKNRREE-PVQHNDGELSSKYPI-----ALILSPTRELAHQLSKHITALCTNAPNINA 301
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R+ + GG+S +KQ+R+L A ++V+GTPGRLW+++S G L + + F V+DEADR+
Sbjct: 302 RIALLTGGLSVQKQQRVL-ANADIVIGTPGRLWDVISTGHGLLRKFQNIKFLVIDEADRL 360
Query: 213 IENGHFRELQSIIDMLPMTNGSNE--GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
+ GHF+E++ I+ L ++ SE VS RQTLVFSAT
Sbjct: 361 LSEGHFKEVEEILTALDRKEIHDKVTADSESEDDASKVSP-----RQTLVFSAT------ 409
Query: 271 FRKKLKH-----GSLKLKQSVNGLNSIETLSERAGMRAN-VAIVDLTNVSVLANKLEESF 324
F K L+ G ++ S+E L ++ R + +D+ V+ +A L+E
Sbjct: 410 FHKGLQQKLAGKGRYFDGDLLDDKQSMEYLLKKLNFREDRPKFIDVNPVAQMAENLKEGL 469
Query: 325 IE 326
+E
Sbjct: 470 VE 471
>gi|336375445|gb|EGO03781.1| hypothetical protein SERLA73DRAFT_46424 [Serpula lacrymans var.
lacrymans S7.3]
Length = 615
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 175/337 (51%), Gaps = 67/337 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+ LHP L++ ++ GF PTPIQ +P A +G+DI+G AETGSGKTLA+GLPI+
Sbjct: 34 WHSYSLHPHLLQILHHQGFTTPTPIQSKSLPKAM-EGRDIVGVAETGSGKTLAYGLPILH 92
Query: 96 RLLEE-REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL----------- 143
LL R + K+ K ++AL++ PTRELALQV+DHL
Sbjct: 93 HLLSRSRHPSSKV-------------KRQVQALVLAPTRELALQVSDHLNMFARSIEAPI 139
Query: 144 ---------------KEVAKGINV--------------RVVPIVGGMSTEKQERLLKARP 174
K+ +KG NV + IVGGMS +KQ R++
Sbjct: 140 KEETLDVELSETQQLKDKSKGKNVVSGTAKTFSKPPLVSIAAIVGGMSAQKQRRIIDRGV 199
Query: 175 ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGS 234
++++ TPGRLW+++ + +L +L + +LDEADRM+ENGHF EL +I+ + +
Sbjct: 200 DILIATPGRLWDILEEDDSLAKQLASLRYLILDEADRMVENGHFAELDNILRLTLRLSRF 259
Query: 235 NEGQSEQTQTCV-TVSSLQRKKRQTLVFSATIALSADFRKKLKHG---SLKLKQSVNGLN 290
E Q + Q T +L QT VFSAT LS D ++ LK G + K +
Sbjct: 260 FETQDTEVQAHAETEDAL-----QTFVFSAT--LSKDLQRDLKKGYRPRIGKKGRSKPAS 312
Query: 291 SIETLSERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
++E L R R AN ++D++ + + L+ES IE
Sbjct: 313 TLEDLVLRLDFRDANPEVIDISPEGGVVSGLQESKIE 349
>gi|240277958|gb|EER41465.1| ATP-dependent RNA helicase MAK5 [Ajellomyces capsulatus H143]
Length = 723
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 30/302 (9%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+ L + + S+ +L F +PTPIQ ACIP A G D++G A TGSGKTLAFG+PI++
Sbjct: 137 WDPLDISAEIQTSLSKLRFAKPTPIQTACIPLIA-SGHDVVGKASTGSGKTLAFGIPILE 195
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV---AKGINV 152
L+ R + + GE + KY ALI++PTRELA Q++ H+ + A IN
Sbjct: 196 YYLKNRREE-PVQHNDGELSSKYPI-----ALILSPTRELAHQLSKHITALCTNAPNINA 249
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R+ + GG+S +KQ+R+L A ++V+GTPGRLW+++S G L + + F V+DEADR+
Sbjct: 250 RIALLTGGLSVQKQQRVL-ANADIVIGTPGRLWDVISTGHGLLRKFQNIKFLVIDEADRL 308
Query: 213 IENGHFRELQSIIDMLPMTNGSNE--GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
+ GHF+E++ I+ L ++ SE VS RQTLVFSAT
Sbjct: 309 LSEGHFKEVEEILTALDRKEIHDKVTADSESEDDASKVSP-----RQTLVFSAT------ 357
Query: 271 FRKKLKH-----GSLKLKQSVNGLNSIETLSERAGMRAN-VAIVDLTNVSVLANKLEESF 324
F K L+ G ++ S+E L ++ R + +D+ V+ +A L+E
Sbjct: 358 FHKGLQQKLAGKGRYFDGDLLDDKQSMEYLLKKLNFREDRPKFIDVNPVAQMAENLKEGL 417
Query: 325 IE 326
+E
Sbjct: 418 VE 419
>gi|363734223|ref|XP_421338.3| PREDICTED: ATP-dependent RNA helicase DDX24 [Gallus gallus]
Length = 809
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 118/362 (32%), Positives = 170/362 (46%), Gaps = 78/362 (21%)
Query: 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
E L + + + AW +L + ++K++ LGF PTPIQ +P+A DI+GAAE
Sbjct: 190 EVLSTSTDHKADVSAWKDLFVPQPVLKALSSLGFSAPTPIQALTLPSAIRDNMDILGAAE 249
Query: 81 TGSGKTLAFGLPIMQRLLEEREKA-----------------GKMLEEKGEEAEK------ 117
TGSGKTLAF +P++ +LE ++ +M E +EAEK
Sbjct: 250 TGSGKTLAFAIPMIHSVLEWQKSNSSASVSDSVSKKPYQHHDEMRWENDDEAEKPNHQQV 309
Query: 118 -------------------------YAPKGH---------LRALIITPTRELALQVTDHL 143
+ K H L L++TPTRELA+QV H+
Sbjct: 310 EDSGDEDDASFATGCVKVQENTEYDSSNKEHTVGLHKKRPLLGLVLTPTRELAVQVKHHI 369
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
VAK ++ +VGGM+ +KQER+L +PE+V+ TPGRLWEL+ HL L L
Sbjct: 370 DAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIATPGRLWELIKERHPHLSNLRQLRC 429
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
V+DEADRM+E GHF EL ++++L N+ Q KRQT VFSA
Sbjct: 430 LVIDEADRMVERGHFLELSQLLEVL------NDSQYN-------------PKRQTFVFSA 470
Query: 264 TIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
T+ L ++ K +E L E+ G++ ++DLT L E+
Sbjct: 471 TLTLVHQTPARILQKKNAKKIDKK--TKLEMLMEKVGIKGKPKVIDLTRKEATVETLMET 528
Query: 324 FI 325
I
Sbjct: 529 RI 530
>gi|402591039|gb|EJW84969.1| DEAD/DEAH box helicase [Wuchereria bancrofti]
Length = 485
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 136/241 (56%), Gaps = 33/241 (13%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W L + ++K++ +GF EPT IQK IP+A DIIGAAETGSGKTLAFG+P+++
Sbjct: 4 WINLYISDAVLKAVADMGFTEPTEIQKLVIPSAVRDRFDIIGAAETGSGKTLAFGVPVVE 63
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
LL + LE G++ KG +RALI+ PTREL +Q+ +H+ + K +V
Sbjct: 64 HLLANQS----FLESSGQK------KG-IRALILAPTRELVMQIKNHIDALLKYTPFKVA 112
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH--LVELHTLSFFVLDEADRMI 213
+VGG+S +KQER+LK PE+V+ TPGRL LM E L + L V+DE DRMI
Sbjct: 113 SVVGGLSLQKQERILKYVPEIVIATPGRLLALMRSAEADSCLSDWSHLQCLVVDETDRMI 172
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
E GHF +LQ I+D L KK QT VFSAT+ + K
Sbjct: 173 EKGHFEDLQHILDTLRKNTS--------------------KKLQTFVFSATLTYTHPVPK 212
Query: 274 K 274
K
Sbjct: 213 K 213
>gi|350407757|ref|XP_003488184.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Bombus impatiens]
Length = 757
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 174/340 (51%), Gaps = 65/340 (19%)
Query: 32 EFDA--WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
+ DA W L + ++K++ F EPT IQ +P A +DI+GAAETGSGKTLAF
Sbjct: 139 DIDAQRWYMLGVPTPVIKALKDQQFHEPTAIQALTLPPAILGHRDILGAAETGSGKTLAF 198
Query: 90 GLPIMQRLLEEREKAGK-------------------------MLEEKGEEAE-------- 116
G+PI+ +LE + K + M+E +E
Sbjct: 199 GIPIINGILELKNKQSQQSDMEFGKEITGITKNKGWICSENEMVENDNSSSESDCCVRVI 258
Query: 117 ---KYAPKGH----LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL 169
K + + L ALI+TPTRELA+Q+ DHL + K +++V ++GGM+ KQER+
Sbjct: 259 NNVKMSKTQNYTKPLYALILTPTRELAIQIKDHLTKAVKYTDIKVAVVLGGMAAVKQERI 318
Query: 170 LKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
L PE+V+ TPGRLWEL+ G HL ++ ++ + +DE DRM+E GHF+ELQ +++ +
Sbjct: 319 LSKGPEIVIATPGRLWELIQQGNPHLSKVDSIKYLAIDETDRMLEKGHFQELQQLLEKIN 378
Query: 230 MTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLK----QS 285
M NE + E+ RQT VFSAT+ + D + L+ K Q
Sbjct: 379 M----NEKKMEE--------------RQTFVFSATLTMVHDIPEYLEKKKRKHTKSKIQK 420
Query: 286 VNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
+ ++ + E G++ N I+D+T S A L E I
Sbjct: 421 LTPAQKLQKIMELVGIK-NPKIIDVTKKSGTATNLTECRI 459
>gi|225561194|gb|EEH09475.1| ATP-dependent RNA helicase MAK5 [Ajellomyces capsulatus G186AR]
Length = 771
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 30/302 (9%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+ L + + S+ +L F +PTPIQ ACIP A G D++G A TGSGKTLAFG+PI++
Sbjct: 189 WDPLDISAEIQTSLSKLRFAKPTPIQTACIPLIA-SGHDVVGKASTGSGKTLAFGIPILE 247
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV---AKGINV 152
L+ R + + GE + KY ALI++PTRELA Q++ H+ + A IN
Sbjct: 248 YYLKNRCEE-PVQHNHGELSSKYPI-----ALILSPTRELAHQLSKHITALCTNAPNINA 301
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R+ + GG+S +KQ+R+L A ++V+GTPGRLW+++S G L + + F V+DEADR+
Sbjct: 302 RIALLTGGLSVQKQQRVL-ANADIVIGTPGRLWDVISTGHGLLRKFQNIKFLVIDEADRL 360
Query: 213 IENGHFRELQSIIDMLPMTNGSNE--GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
+ GHF+E++ I+ L ++ SE VS RQTLVFSAT
Sbjct: 361 LSEGHFKEVEEILTALDRKEIHDKVTADSESEDDASKVSP-----RQTLVFSAT------ 409
Query: 271 FRKKLKH-----GSLKLKQSVNGLNSIETLSERAGMRAN-VAIVDLTNVSVLANKLEESF 324
F K L+ G ++ S+E L ++ R + +D+ V+ +A L+E
Sbjct: 410 FHKGLQQKLAGKGRYFDGDLLDDKQSMEYLLKKLNFREDRPKFIDVNPVAQMAENLKEGL 469
Query: 325 IE 326
+E
Sbjct: 470 VE 471
>gi|358369372|dbj|GAA85987.1| ATP dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 766
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 174/300 (58%), Gaps = 24/300 (8%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW L L P ++ + ++ F PT +QK+CIP G D+IG A TGSGKTLAFG+PI+
Sbjct: 193 AWESLGLSPEILTGLSKMKFTTPTLVQKSCIPQIL-DGHDVIGKASTGSGKTLAFGIPIL 251
Query: 95 QRLLEERE---KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA---K 148
+ LE++ +AGK EEK +++ AP ALI++PTRELA Q+ H+ E+A
Sbjct: 252 EHYLEKKREDLRAGK--EEKKKDS---API----ALIMSPTRELAHQLAKHIGELALHAP 302
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
G + R+ + GG+S +KQ+R+L A ++V+GTPGR+WE++S G+ + ++ + F V+DE
Sbjct: 303 GSSARIALLTGGLSVQKQQRVL-AGADIVIGTPGRVWEVLSSGQGLIRKMSDIKFLVIDE 361
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++ GHF+E + I+ L + G + + R +RQTLVFSAT
Sbjct: 362 ADRLLSEGHFKEAEEILGALDRVEDGDFGGDDSEDEEKEDA---RAQRQTLVFSAT--FH 416
Query: 269 ADFRKKLKHGSLKLKQSV-NGLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
D ++KL + + + S+E L ++ R +D+ VS +A L+E +E
Sbjct: 417 RDLQQKLAGKARWTGGDIMSNKESMEYLLQKLKFREEKPKFIDVNPVSQMAEGLKEGIVE 476
>gi|443922417|gb|ELU41869.1| delta-sterol C-methyltransferase [Rhizoctonia solani AG-1 IA]
Length = 1600
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 169/314 (53%), Gaps = 44/314 (14%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W + LHP++ S+ L F PTPIQK+ +P A QG+D++G AETGSGKTLA+ LPI+Q
Sbjct: 137 WASMSLHPIISHSLLELSFTNPTPIQKSALPFA-QQGRDVVGVAETGSGKTLAYSLPILQ 195
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV----AKGIN 151
+L + K A ALI+ PTRELALQV +HLK+V A N
Sbjct: 196 YILS---------NPTSNSSRKLA------ALILAPTRELALQVCEHLKKVISAGASSSN 240
Query: 152 -----VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL-----HTL 201
V + IVGG+S +KQ R+L+ +++V TPGRLW+++ GE V L ++
Sbjct: 241 GGVPRVSIAAIVGGLSVQKQRRILERGADIIVATPGRLWDVL--GEVFSVYLLAERIRSV 298
Query: 202 SFFVLDEADRMIENGHFRELQSIIDML-----PMTNGSNEGQ---SEQTQTCVTVSSLQR 253
F VLDEADRM+E GHF+EL +I+ + P G +E T V S+
Sbjct: 299 QFLVLDEADRMVEEGHFQELDNIVKLTVRRKEPEEQDEMAGDPVFAEATAAAVD-SAPAN 357
Query: 254 KKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTN 312
+ QT VFSAT +S + + L S K K ++++ L + R N AIVDL+
Sbjct: 358 TEMQTFVFSAT--MSKELQINLSRRSTKRKNKDQKGSTLDDLLMKLDFRDPNPAIVDLSP 415
Query: 313 VSVLANKLEESFIE 326
+ L ES IE
Sbjct: 416 EYGKVSTLTESRIE 429
>gi|302407546|ref|XP_003001608.1| ATP-dependent RNA helicase MAK5 [Verticillium albo-atrum VaMs.102]
gi|261359329|gb|EEY21757.1| ATP-dependent RNA helicase MAK5 [Verticillium albo-atrum VaMs.102]
Length = 787
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 166/311 (53%), Gaps = 30/311 (9%)
Query: 24 VSEAEISTE---FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
+ EAE TE W L L P + +I RL F +PT IQ A IP G D+IG A
Sbjct: 211 LEEAEDDTEDLDMSEWMGLNLSPATIATIRRLKFTKPTTIQCAAIPHI-QAGHDVIGKAS 269
Query: 81 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVT 140
TGSGKTLAFG+PI+ + LE+ + E + E AP ALII+PTRELA Q+
Sbjct: 270 TGSGKTLAFGIPIVDKWLEKNGEEQDSAMETDDAPEAKAP----LALIISPTRELAHQIM 325
Query: 141 DHLKEVAKGINVR--VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
+H+KE+ G++ + V + GG+S KQ+R L A+ ++VVGTPGRLWE++S +
Sbjct: 326 NHIKELCAGLSKQPYVCSVTGGLSVYKQQRQL-AKADIVVGTPGRLWEVLSTNTTVMESF 384
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 258
+ + V+DEADR++ GHF+E + I L + + EQT + RQT
Sbjct: 385 KKIQYLVVDEADRILSEGHFKEAEEIFKALDRNVTEEDDEDEQTLS----------PRQT 434
Query: 259 LVFSATI--ALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVA-IVDLTNVSV 315
LVFSAT L K K G + ++ S+E L +R R VD+ VS
Sbjct: 435 LVFSATFHKGLQQKLAGKGKFGLMSEEE------SMEYLLKRLNFREEKPEFVDVNPVSQ 488
Query: 316 LANKLEESFIE 326
+A L+E IE
Sbjct: 489 MAEGLKEGMIE 499
>gi|334310507|ref|XP_001370949.2| PREDICTED: ATP-dependent RNA helicase DDX24 [Monodelphis domestica]
Length = 814
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 174/355 (49%), Gaps = 84/355 (23%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ +GF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 201 DVSAWKDLFVPEPVLQALSSMGFSAPTPIQALALAPAIRDNLDILGAAETGSGKTLAFAI 260
Query: 92 PIMQRLL----EEREK----------AGKML---------------------EEKGEEAE 116
P++ +L E++E G+ L EE+ +E
Sbjct: 261 PMIHSVLRWQDEQKETHHGQAGLHSADGESLGDADDSSDDSNEILNPLPMEREEERDENP 320
Query: 117 KYAPK------------------GH------LRALIITPTRELALQVTDHLKEVAKGINV 152
++P GH L L++TPTRELA+QV H+ VAK +
Sbjct: 321 SHSPSDKEESGDIKLEFEYEKAAGHRNRSNPLLGLVLTPTRELAVQVKHHIDAVAKFTGI 380
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R +VGGM+ +KQ+R+L RPE+V+ TPGRLWEL+ +HL +L L V+DEADRM
Sbjct: 381 RTALLVGGMAPQKQQRMLTRRPEIVIATPGRLWELIKEQHQHLSDLKQLRCLVIDEADRM 440
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL--SAD 270
+E GHF EL +++ML N+ Q +RQT VFSAT+ L A
Sbjct: 441 VEKGHFVELSQLLEML------NDSQY-------------NPERQTFVFSATLTLVHQAP 481
Query: 271 FRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
R K + K+ ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 482 ARVFQKKNAKKIDKT----GKLDMLMQKIGMRGKPKVIDLTRKEATVETLTETKI 532
>gi|451851184|gb|EMD64485.1| hypothetical protein COCSADRAFT_37068 [Cochliobolus sativus ND90Pr]
Length = 823
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 176/325 (54%), Gaps = 38/325 (11%)
Query: 7 GTVVVVSNGP-DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACI 65
G +++N P DD++EE VS AW +L L ++ ++ +L F +PT IQ + I
Sbjct: 233 GAFDILANQPMDDSDEEDVS---------AWGKLDLSEEMLGALAKLKFSKPTNIQTSTI 283
Query: 66 PAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 125
P G+D+IG A TGSGKTLAFG+PI++ L G A K
Sbjct: 284 PEII-AGRDVIGKASTGSGKTLAFGIPIIESYL------------AGRAAPKDTKDKVPL 330
Query: 126 ALIITPTRELALQVTDHL-KEVAKGI--NVRVVPIVGGMSTEKQERLLKARPELVVGTPG 182
ALII PTRELA Q+ +HL K AKG + + I GG+S +KQ R L+ + ++VVGTPG
Sbjct: 331 ALIIAPTRELAHQINEHLVKLCAKGDFDSPYIASITGGLSVQKQRRQLE-KADIVVGTPG 389
Query: 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQT 242
RLWE++S G+ L + + F V+DEADR++ GHF+E+ I+ +L + +E +E
Sbjct: 390 RLWEVISSGQGLLAKFKQIKFLVVDEADRLLSQGHFKEMDDILKVLEPDDEVDE-NAEPA 448
Query: 243 QTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMR 302
+T RQTLVFSAT D ++KL + +N S+E L ++ R
Sbjct: 449 ETP-------EANRQTLVFSAT--FGKDLQRKLAGKAKFGGDQMNQQQSMEYLLKKLRFR 499
Query: 303 -ANVAIVDLTNVSVLANKLEESFIE 326
+D S +A+KL+E IE
Sbjct: 500 EEKPKFIDANPTSQMASKLQEGLIE 524
>gi|156060651|ref|XP_001596248.1| hypothetical protein SS1G_02468 [Sclerotinia sclerotiorum 1980]
gi|160409986|sp|A7EAY2.1|MAK5_SCLS1 RecName: Full=ATP-dependent RNA helicase mak5
gi|154699872|gb|EDN99610.1| hypothetical protein SS1G_02468 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 780
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 180/312 (57%), Gaps = 35/312 (11%)
Query: 20 EEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAA 79
+E+ E E+S W EL L + ++ ++GF +PTPIQ IP G D++G A
Sbjct: 203 DEDAAGEVEVS----GWVELDLSSNTLMALSKMGFSKPTPIQSEAIPEVL-AGHDVVGKA 257
Query: 80 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV 139
TGSGKTLAFG+PI+++ LE G++ E++ +++ + ALI++PTRELA Q+
Sbjct: 258 STGSGKTLAFGIPIVEKWLE---VYGELDEDELKKSTRPPT-----ALILSPTRELAHQL 309
Query: 140 TDHLKEVAKGI--NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
T+H+ + KG+ + V + GG+S +KQ+R L ++ ++++GTPGRLWE++S +
Sbjct: 310 TEHITTLCKGMPTSPYVAAVTGGLSVQKQQRQL-SKADIIIGTPGRLWEVISSSNELSAG 368
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
L + F V+DEADR++ +GHF+E + I++ L T+G+ + E T RQ
Sbjct: 369 LKQVRFLVIDEADRLLTDGHFKEAEEILNALDRTHGNEDDDEEDTLP----------PRQ 418
Query: 258 TLVFSATIALSADFRKKLKHG-SLKLKQSV-NGLNSIETLSERAGMR-ANVAIVDLTNVS 314
TLVFSAT F K L+ + K KQS + S+E L ++ R VD+ +S
Sbjct: 419 TLVFSAT------FHKGLQQKLAGKGKQSFKDDSQSMEYLLKKLNFREEKPKFVDVNPIS 472
Query: 315 VLANKLEESFIE 326
+A L+E +E
Sbjct: 473 QMAANLKEGMVE 484
>gi|330926678|ref|XP_003301562.1| hypothetical protein PTT_13094 [Pyrenophora teres f. teres 0-1]
gi|311323563|gb|EFQ90355.1| hypothetical protein PTT_13094 [Pyrenophora teres f. teres 0-1]
Length = 827
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 169/298 (56%), Gaps = 30/298 (10%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW+EL L ++ ++ +L F +PT IQK+ IP G+D+IG A TGSGKTLAFG+PI+
Sbjct: 259 AWDELELSEEMLGALAKLKFSKPTTIQKSTIPEIL-AGRDVIGKASTGSGKTLAFGIPII 317
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV-AKGI--N 151
+ L R A K E+K ALII PTRELA Q+ HL + AKG
Sbjct: 318 ESYLASRSSASKDPEDK-----------MPIALIIAPTRELAHQINAHLIALCAKGDFDP 366
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+ I GG+S +KQ R L+ + ++VVGTPGRLWE++S G+ L + + F V+DEADR
Sbjct: 367 PYITSITGGLSVQKQRRQLE-KADIVVGTPGRLWEVISDGQGLLRKFKQIKFLVVDEADR 425
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
+ GHF+E+ I+ +L + ++E + + KRQTLVFSAT D
Sbjct: 426 LFSEGHFKEMGEILKVLEPDDVTDENAESDEKEEI--------KRQTLVFSAT--FGKDL 475
Query: 272 RKKLKHGSLKLKQS--VNGLNSIETLSERAGMRANVAI-VDLTNVSVLANKLEESFIE 326
+KKL G +K S ++ S+E L ++ R + +D +S +A+KL+E IE
Sbjct: 476 QKKL-AGKVKGGGSDLMSQQQSMEYLLKKLQFREEKPVFIDANPMSQMASKLQEGLIE 532
>gi|346970819|gb|EGY14271.1| ATP-dependent RNA helicase MAK5 [Verticillium dahliae VdLs.17]
Length = 700
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 168/315 (53%), Gaps = 36/315 (11%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
DDAE+ +SE W L L P + +I RL F +PT IQ IP G D+I
Sbjct: 129 DDAEDLDMSE---------WMGLNLSPATIATIRRLKFTKPTTIQSTAIPHI-QAGHDVI 178
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
G A TGSGKTLAFG+PI+ + LE+ + + E + E AP ALII+PTRELA
Sbjct: 179 GKASTGSGKTLAFGIPIVDKWLEKNGEEQESAMETDDAPEAKAP----LALIISPTRELA 234
Query: 137 LQVTDHLKEVAKGINVR--VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
Q+ +H+K++ G++ + V + GG+S KQ+R L A+ ++VVGTPGRLWE++S
Sbjct: 235 HQIMNHIKDLCAGLSKQPYVCSVTGGLSVYKQQRQL-AKADIVVGTPGRLWEVLSTNMTV 293
Query: 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 254
+ + + V+DEADR++ GHF+E + I L + + EQT +
Sbjct: 294 MESFKKIQYLVVDEADRILSEGHFKEAEEIFKALDRNVTEEDDEDEQTLS---------- 343
Query: 255 KRQTLVFSATI--ALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVA-IVDLT 311
RQTLVFSAT L K K G + ++ S+E L +R R VD+
Sbjct: 344 PRQTLVFSATFHKGLQQKLAGKGKFGLMSEEE------SMEYLLKRLNFREEKPEFVDVN 397
Query: 312 NVSVLANKLEESFIE 326
VS +A L+E IE
Sbjct: 398 PVSQMAKGLKEGMIE 412
>gi|116202351|ref|XP_001226987.1| hypothetical protein CHGG_09060 [Chaetomium globosum CBS 148.51]
gi|88177578|gb|EAQ85046.1| hypothetical protein CHGG_09060 [Chaetomium globosum CBS 148.51]
Length = 1002
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 161/301 (53%), Gaps = 33/301 (10%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ W L L P ++ SI RL F +PT IQ IP + G D++G A TGSGKTLAFG+
Sbjct: 196 DMSQWVPLDLSPQILSSIARLKFAKPTAIQARAIPQIMN-GHDVVGKAATGSGKTLAFGI 254
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
PI++ L +R + + AEK P A+I++PTRELA Q+ DHLK + G+
Sbjct: 255 PIVESWLAKRAE--------NQTAEKKGPI----AMILSPTRELAHQICDHLKLLCAGLT 302
Query: 152 V--RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209
+ + GG++ +KQ+R L+ R ++VVGTPGR+WELMS L L + F V+DEA
Sbjct: 303 TGPYICSVTGGLAVQKQQRQLE-RADIVVGTPGRMWELMSSSNSVLGSLRGIDFLVVDEA 361
Query: 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269
DR++++GHF++ + I+ + T E + R RQTLVFSAT
Sbjct: 362 DRLLKDGHFKDAEEILKAIDRTVPGEEADGDSDDEA------PRHHRQTLVFSAT----- 410
Query: 270 DFRKKLKHGSLKLKQSVN---GLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEESFI 325
F K L+ L K N S+E L ++ R VD +S +A L+E I
Sbjct: 411 -FNKNLQQ-KLAGKARFNLTSDTESLEYLLKKLNFREERPKFVDTNPISQMAENLKEGLI 468
Query: 326 E 326
+
Sbjct: 469 Q 469
>gi|452848186|gb|EME50118.1| hypothetical protein DOTSEDRAFT_165107 [Dothistroma septosporum
NZE10]
Length = 743
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 174/314 (55%), Gaps = 34/314 (10%)
Query: 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
E+ EAE S + AW L+L P M S+ +L F +PTP+Q+A IP + G D++G A
Sbjct: 148 EDAGDEAE-SVDVSAWRSLKLSPDTMASLSKLKFSKPTPVQQAVIPEVLN-GHDVVGKAS 205
Query: 81 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVT 140
TGSGKT AFG+PI++R LE + K + E AP ALI++PTRELA Q+
Sbjct: 206 TGSGKTFAFGIPILERYLEAAAR-------KSRKGEGKAP----LALILSPTRELAHQLD 254
Query: 141 DHLKEVAKGI---NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
HL + + + + GG+S KQ+RLL+ ++++GTPGRLWE++S G+
Sbjct: 255 HHLTALFSEVLSSKPSIATLTGGLSLLKQQRLLRD-ADVLIGTPGRLWEIISSGQGIGAA 313
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
L + F V+DEADR++ G+F+E++ I++ L T+ ++E + E + S RQ
Sbjct: 314 LKQIEFLVVDEADRLLSQGNFKEVEDILNTLDRTD-TDEDKKETNNSGPDSHS-----RQ 367
Query: 258 TLVFSATIALSADFRKKLKH---GSLKLKQSVNGLN-SIETLSERAGMRAN-VAIVDLTN 312
TLVFSAT F + L++ G+ K K + G ++E L + R +D+
Sbjct: 368 TLVFSAT------FDRGLQNKLVGNFKYKDDLLGTKETLEYLLSKLNFREKPPKFIDMNP 421
Query: 313 VSVLANKLEESFIE 326
+A L+E +E
Sbjct: 422 TKQMATGLKEGMVE 435
>gi|154274552|ref|XP_001538127.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|160409985|sp|A6R9U4.1|MAK5_AJECN RecName: Full=ATP-dependent RNA helicase MAK5
gi|150414567|gb|EDN09929.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 772
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 114/319 (35%), Positives = 175/319 (54%), Gaps = 30/319 (9%)
Query: 18 DAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
+A EE V E+ + W+ L + + S+ +L F +PTPIQ ACIP A G D++G
Sbjct: 173 EALEEEVDGDEV--DVSGWDPLGISAEIQTSLSKLRFAKPTPIQTACIPLIA-SGHDVVG 229
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137
A TGSGKTLAFG+PI++ L+ R + + E + KY ALI++PTRELA
Sbjct: 230 KASTGSGKTLAFGIPILEYYLKNRREE-PVQHNDAELSSKYPI-----ALILSPTRELAH 283
Query: 138 QVTDHLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
Q++ H+ + A IN R+ + GG+S +KQ+R+L A ++V+GTPGRLW+++S G
Sbjct: 284 QLSKHITALCTNAPNINARIALLTGGLSVQKQQRVL-ANADIVIGTPGRLWDVISTGHGL 342
Query: 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 254
L + + F V+DEADR++ GHF+E++ I+ L E + T + R+
Sbjct: 343 LRKFQNIKFLVIDEADRLLSEGHFKEVEEILTAL----DRKEIHHKVTADSESEDDASRE 398
Query: 255 K-RQTLVFSATIALSADFRKKLKH-----GSLKLKQSVNGLNSIETLSERAGMRAN-VAI 307
RQTLVFSAT F K L+ G ++ S+E L ++ R +
Sbjct: 399 SPRQTLVFSAT------FHKGLQQKLAGKGRYFDGDLLDDKQSMEYLLKKLNFREDRPKF 452
Query: 308 VDLTNVSVLANKLEESFIE 326
+D+ V+ +A L+E +E
Sbjct: 453 IDVNPVAQMAENLKEGLVE 471
>gi|406859182|gb|EKD12251.1| DEAD/DEAH box helicase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 762
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 177/312 (56%), Gaps = 37/312 (11%)
Query: 20 EEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAA 79
EE+ V E T+ AW EL L P + ++ +LGF++PT IQ + IP G D++G A
Sbjct: 186 EEDAVEE---ETDVSAWTELDLSPDTLSALSKLGFQKPTLIQSSAIPEIM-AGHDVVGKA 241
Query: 80 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV 139
TGSGKTLAFG+PI++ +E G++ E+ E + P ALI++PTRELA Q+
Sbjct: 242 STGSGKTLAFGIPILESWIE---TYGQLDED---ELKASRPP---TALILSPTRELAHQL 292
Query: 140 TDHLKEVAKGINV--RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
T+H+ + KG+ V + GG+S +KQ+R L A+ ++V+GTPGRLWE+MS +
Sbjct: 293 TEHITALCKGLPSAPYVAAVTGGLSVQKQQRQL-AKADIVIGTPGRLWEVMSSSIELTAA 351
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
+ F V+DEADR++ GHFRE + II GS + Q + + V + RQ
Sbjct: 352 FKKIKFLVVDEADRLLTEGHFREAEQII-------GSLDRQQDADEDDEIVPT-----RQ 399
Query: 258 TLVFSATIALSADFRKKLKHG-SLKLKQSV-NGLNSIETLSERAGMRANVA-IVDLTNVS 314
TLVFSAT F K L+ + K KQ + + S+E L ++ R + VD+ +S
Sbjct: 400 TLVFSAT------FHKGLQQKLAGKGKQGLMDDSESMEYLLKKLNFREDKPKFVDVNPIS 453
Query: 315 VLANKLEESFIE 326
+A L+E +E
Sbjct: 454 QMAEGLKEGMVE 465
>gi|425778251|gb|EKV16391.1| ATP dependent RNA helicase, putative [Penicillium digitatum Pd1]
gi|425780471|gb|EKV18477.1| ATP dependent RNA helicase, putative [Penicillium digitatum PHI26]
Length = 771
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 146/244 (59%), Gaps = 19/244 (7%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW+ L L P ++ ++ F P+ IQKA IPA G D++G A TGSGKTLAFG+PI+
Sbjct: 193 AWDGLNLSPETFTALSKMKFSSPSAIQKASIPAIL-DGHDVVGKASTGSGKTLAFGIPII 251
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV---AKGIN 151
+ L++R GK+ E+ + +P ALI++PTRELA Q+ H+ ++ + N
Sbjct: 252 EHYLDKR---GKLREQSDTSEQNKSPI----ALILSPTRELAHQLGKHIGDLIANSPDTN 304
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
R+ + GGMS +KQ+R L A ++VVGTPGR+WE++S G + ++ + F V+DEADR
Sbjct: 305 ARIALVTGGMSIQKQQRQL-ATADIVVGTPGRVWEILSTGTGLIRKMQKIQFLVVDEADR 363
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
++ GHF+E++ I+D L + +Q + S RQTLVFSAT D
Sbjct: 364 LLSEGHFKEVEDILDALDKHQAGDIADVDQEEEEEQPS-----HRQTLVFSAT--FHKDL 416
Query: 272 RKKL 275
++KL
Sbjct: 417 QQKL 420
>gi|347831310|emb|CCD47007.1| hypothetical protein [Botryotinia fuckeliana]
Length = 774
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 173/312 (55%), Gaps = 35/312 (11%)
Query: 20 EEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAA 79
EE+ E ++S+ W EL L + ++ ++GF +PTPIQ IP G D++G A
Sbjct: 197 EEDAAKEVDVSS----WEELDLSSNTLSALSKMGFSKPTPIQSEAIPEVL-AGHDVVGKA 251
Query: 80 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV 139
TGSGKTLAFG+PI+++ LE A L+E + P ALI++PTRELA Q+
Sbjct: 252 STGSGKTLAFGIPIVEKWLE----AYGELDEDELKKNTRPPT----ALILSPTRELAHQL 303
Query: 140 TDHLKEVAKGINVR--VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
T+H+ + KG+ V + GG+S +KQ+R L A+ ++++GTPGRLWE++S +
Sbjct: 304 TEHITALCKGMPTSPWVAAVTGGLSVQKQQRQL-AKADIIIGTPGRLWEVISSSNELSAS 362
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
L + F V+DEADR++ +GHF+E + I++ L T+G + RQ
Sbjct: 363 LKQVRFLVIDEADRLLTDGHFKEAEEILNALDRTHG----------DEDDEEEDELPPRQ 412
Query: 258 TLVFSATIALSADFRKKLKHG-SLKLKQSV-NGLNSIETLSERAGMR-ANVAIVDLTNVS 314
TLVFSAT F K L+ + K KQS + S+E L ++ R VD+ +S
Sbjct: 413 TLVFSAT------FHKGLQQKLAGKGKQSFKDESQSMEYLLKKLNFREEKPKFVDVNPIS 466
Query: 315 VLANKLEESFIE 326
+A L+E +E
Sbjct: 467 QMAANLKEGMVE 478
>gi|224051667|ref|XP_002200206.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Taeniopygia guttata]
Length = 796
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/362 (30%), Positives = 171/362 (47%), Gaps = 78/362 (21%)
Query: 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
E L + + + AW +L + +++++ LGF PTPIQ +P+A D++GAAE
Sbjct: 181 EVLSASTDQKADVSAWKDLFVPEPVLQALSYLGFSAPTPIQALALPSAIRDNMDVLGAAE 240
Query: 81 TGSGKTLAFGLPIMQRLL----------------------------EEREKAGKML---- 108
TGSGKTLAF +P++ +L E+ ++A K+
Sbjct: 241 TGSGKTLAFAIPMIHSVLQWQKSSNSTTRNDSVSKESHQHHDEPRWEDEDEAEKLTHQQA 300
Query: 109 EEKGEEAEKYAPKGHLR-------------------------ALIITPTRELALQVTDHL 143
E+ G+E + G ++ L++TPTRELA+QV H+
Sbjct: 301 EDSGDEDDASFTTGCVKVLENVEFDCDDETHTGDSNKKRPLLGLVLTPTRELAVQVKHHI 360
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
VAK ++ +VGGM+ +KQER+L +PE+V+ TPGRLWEL+ HL L L
Sbjct: 361 DAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIATPGRLWELVKERHPHLSNLRQLRC 420
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
V+DEADRM+E GHF EL ++++L N+ Q +RQT VFSA
Sbjct: 421 LVIDEADRMVEKGHFLELSQLLEIL------NDSQ-------------YNPQRQTFVFSA 461
Query: 264 TIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEES 323
T+ L ++ K +E L E+ G++ ++DLT L E+
Sbjct: 462 TLTLVHQTPTRVLQKKNAKKMDKK--TKLELLMEKVGIKGKPKVIDLTRKEATVETLTET 519
Query: 324 FI 325
I
Sbjct: 520 RI 521
>gi|393212749|gb|EJC98248.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 718
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 169/311 (54%), Gaps = 38/311 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W++ LH L+ +++ F PTPIQ++ IP A +GKD++G A+TGSGKTLA+GLPI+
Sbjct: 120 WSDFSLHARLLSALHSQKFATPTPIQRSAIPVAL-KGKDVVGVAQTGSGKTLAYGLPILN 178
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV--------A 147
LL+ M KG K L+AL++ PTRELALQVT+HLK
Sbjct: 179 HLLQ-------MGRPKG--------KRPLQALVLAPTRELALQVTEHLKACVVEDAERRT 223
Query: 148 KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 207
V + +VGGM+ +KQ R+++ +++V TPGRLW+L+ +L TL F VLD
Sbjct: 224 GAPRVSIGTVVGGMAIQKQIRIIERGVDILVATPGRLWDLIEEDNSLSEQLRTLRFLVLD 283
Query: 208 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSE----QTQT-CVTVSSLQRKKRQTLVFS 262
EADRMIE GHF EL +II + + S E +T+T S + QT +FS
Sbjct: 284 EADRMIETGHFAELDNIIRLTTRQSKSTETDEAFMFGETETRGKNDESNEETPMQTFIFS 343
Query: 263 ATIALSADFR---KKLKHGSLKLKQSVNGLNSIETLSE---RAGMR-ANVAIVDLTNVSV 315
AT LS D + KK K S K+ + + TL E R R ++DL+
Sbjct: 344 AT--LSRDLQQNLKKWKRISNKVTKKGTTDKPVSTLDELLSRLDFRDPEPEVIDLSPEGG 401
Query: 316 LANKLEESFIE 326
+ + L+ES +E
Sbjct: 402 IVSTLKESQVE 412
>gi|85086234|ref|XP_957656.1| hypothetical protein NCU04041 [Neurospora crassa OR74A]
gi|74662508|sp|Q7RZH4.1|MAK5_NEUCR RecName: Full=ATP-dependent RNA helicase mak-5
gi|28918750|gb|EAA28420.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|39979232|emb|CAE85602.1| related to ATP-dependent RNA helicase [Neurospora crassa]
Length = 805
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 163/307 (53%), Gaps = 34/307 (11%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W L L P ++ SI +L F +PT IQ IP G D+IG A TGSGKTLAFG+P+++
Sbjct: 211 WVPLDLSPRMISSIAKLRFSKPTVIQSKAIPEI-MAGHDVIGKASTGSGKTLAFGIPVIE 269
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV--R 153
L E + EE+ KG ALI++PTRELA Q+ DHL+ + KG+
Sbjct: 270 SWLSAAETRKQNKEER---------KGAT-ALILSPTRELAQQIRDHLQALCKGLPTAPY 319
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+ ++GGM+ +KQ+R L+ ++V+ TPGR+WE+MS L L +SF VLDEADR++
Sbjct: 320 ICSVLGGMAVQKQKRQLQV-ADIVIATPGRMWEVMSSDNSVLASLRNISFLVLDEADRLL 378
Query: 214 ENGHFRELQSIIDML--PMTNGSNEGQS-------------EQTQTCVTVSSLQRKKRQT 258
++GHF+E + I L P +NE Q E ++ KRQT
Sbjct: 379 KDGHFKEAEEIFKALDRPPVEENNEDQKMGGTDEEGQEEEEEDSEEEEEEEEEHVNKRQT 438
Query: 259 LVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLAN 318
L+FSAT + + ++KL G K K + +E L ++ R VD V +A
Sbjct: 439 LIFSAT--FNKNLQQKL-AGKSKFKAT--STQDMEYLLQKLNFRETPKFVDANPVHQMAE 493
Query: 319 KLEESFI 325
L+E I
Sbjct: 494 NLKEGLI 500
>gi|451996154|gb|EMD88621.1| hypothetical protein COCHEDRAFT_1181781 [Cochliobolus
heterostrophus C5]
Length = 742
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 168/309 (54%), Gaps = 30/309 (9%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
L + + + AW +L L ++ ++ +L F EPT IQ + IP G+D+IG A TG
Sbjct: 160 LATNGDDEEDVSAWAKLDLSEEMLGALAKLKFSEPTDIQASTIPEII-AGRDVIGKASTG 218
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142
SGKTLAFG+PI++ L R A K ++K P ALII PTRELA Q+ +H
Sbjct: 219 SGKTLAFGIPIIESYLTRR-AASKDTKDK-------VP----LALIIAPTRELAHQINEH 266
Query: 143 L-KEVAKG--INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 199
L K AKG + + I GG+S +KQ R L+ + ++VVGTPGRLWE++S G+ L +
Sbjct: 267 LVKLCAKGEFDSPYIASITGGLSVQKQRRQLE-KADIVVGTPGRLWEVISSGQGLLAKFK 325
Query: 200 TLSFFVLDEADRMIENGHFRELQSIIDML-PMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 258
+ F V+DEADR++ GHF+E+ I+ +L P + E+T RQT
Sbjct: 326 QIKFLVVDEADRLLSQGHFKEMDDILKVLEPDDEVDENAEPEETPEA---------NRQT 376
Query: 259 LVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLA 317
LVFSAT D ++KL + +N S+E L ++ R +D S +A
Sbjct: 377 LVFSAT--FGKDLQRKLAGKAKFGGDQMNQQQSMEYLLKKLRFREEKPKFIDTNPTSQMA 434
Query: 318 NKLEESFIE 326
+KL+E IE
Sbjct: 435 SKLQEGLIE 443
>gi|310800598|gb|EFQ35491.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 777
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/324 (36%), Positives = 173/324 (53%), Gaps = 33/324 (10%)
Query: 16 PDDAEEEL--------VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPA 67
PDDA+ E V +A+ + W +L L P L+ +I +L F +PT IQ + IP
Sbjct: 179 PDDAKLESSGFAALEEVQDADEDLDMTPWVDLGLSPALVAAIAKLKFAKPTNIQSSTIPD 238
Query: 68 AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127
G D+IG A TGSGKTLAF +PI++ +++ + G GE K P AL
Sbjct: 239 IL-AGHDVIGKASTGSGKTLAFSIPIVEEWVDKHDGDGNA---DGERPSK--PDNTPFAL 292
Query: 128 IITPTRELALQVTDHLKEVAKGI-NVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLW 185
I++PTRELA Q+T+H+K + G+ N V + GG+S KQ+R L A+ ++V+GTPGRLW
Sbjct: 293 ILSPTRELAHQITNHIKNLCAGLLNAPFVCSVTGGLSVFKQQRQL-AKADIVIGTPGRLW 351
Query: 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTC 245
E++SG + L + + V+DEADR++ GHF+E I+D L +EG+ +
Sbjct: 352 EVISGSRELLAGFRKIRYLVVDEADRLLSEGHFKEAGQILDALDREVIEDEGEDYDNEKG 411
Query: 246 VTVSSLQRKKRQTLVFSATI--ALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMR- 302
++ RQTLVFSAT L K K G + K+ S+E L ++ R
Sbjct: 412 LS-------DRQTLVFSATFHQGLQQKLAGKGKWGLMSEKE------SMEYLLKKLNFRE 458
Query: 303 ANVAIVDLTNVSVLANKLEESFIE 326
+D+ +A L+E IE
Sbjct: 459 EKPKFIDVNPAKQMAAGLKEGLIE 482
>gi|350286853|gb|EGZ68100.1| DEAD-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 777
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 156/292 (53%), Gaps = 29/292 (9%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W L L P ++ SI +L F +PT IQ IP G D+IG A TGSGKTLAFG+P+++
Sbjct: 208 WVPLDLSPRMISSIAKLRFSKPTVIQSKAIPEI-MAGHDVIGKASTGSGKTLAFGIPVIE 266
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV--R 153
L E + EE+ KG ALI++PTRELA Q+ DHL+ + KG+
Sbjct: 267 SWLSAAETRKQNKEER---------KGAT-ALILSPTRELAQQIRDHLQALCKGLPTAPY 316
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+ ++GGM+ +KQ+R L+ ++V+ TPGR+WE+MS L L +SF VLDEADR++
Sbjct: 317 ICSVLGGMAVQKQKRQLQV-ADIVIATPGRMWEVMSSDNSVLASLRNISFLVLDEADRLL 375
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
++GHF+E + I L + KRQTL+FSAT + + ++
Sbjct: 376 KDGHFKEAEEIFKAL----------DRPPEEEEEEEEEHVNKRQTLIFSAT--FNKNLQQ 423
Query: 274 KLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
KL G K K + +E L ++ R VD V +A L+E I
Sbjct: 424 KL-AGKSKFKAT--STQDMEYLLQKLNFRETPKFVDANPVHQMAENLKEGLI 472
>gi|448091200|ref|XP_004197272.1| Piso0_004519 [Millerozyma farinosa CBS 7064]
gi|448095690|ref|XP_004198303.1| Piso0_004519 [Millerozyma farinosa CBS 7064]
gi|359378694|emb|CCE84953.1| Piso0_004519 [Millerozyma farinosa CBS 7064]
gi|359379725|emb|CCE83922.1| Piso0_004519 [Millerozyma farinosa CBS 7064]
Length = 751
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 167/307 (54%), Gaps = 35/307 (11%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
S + W L L ++ + +L F +PTPIQK IP A +G+D +G A TGSGKTLA+
Sbjct: 175 SIDLPHWKPLSLSAYTLQGLQQLKFSKPTPIQKKAIPYAL-EGRDTVGKAVTGSGKTLAY 233
Query: 90 GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 149
G+PI++R L ++A + + ++ +P G +I PTRELA QV DHLKE+AK
Sbjct: 234 GIPILERYLTRLQQA----QTHSKTSKISSPAG----IIFAPTRELAHQVVDHLKELAKY 285
Query: 150 INV---RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
+V + GG+S +KQERLL+ P +VV TPGR E++ EK++ +L VL
Sbjct: 286 FPFPPNAIVSMTGGLSIQKQERLLEKGPGIVVTTPGRFLEILQSDEKYVTQLSGCDIVVL 345
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
DEADR++++GHF E + +++L + +++ +S + QTLV+SAT
Sbjct: 346 DEADRLLQDGHFEEFEKALELLSKSRKNSKAKSW--------------RWQTLVYSAT-- 389
Query: 267 LSADFRKKLKHGSLK------LKQSVNGLNSIETLSERAGMRANV-AIVDLTNVSVLANK 319
S D KL + K V+ I L+ + R + A+VD ++A +
Sbjct: 390 FSKDLFSKLDKNPRRKETFDSSKSLVDNTEIITLLNSKLKFRDSAPALVDANPKEIVAGQ 449
Query: 320 LEESFIE 326
+ E+ +E
Sbjct: 450 ITEALVE 456
>gi|154314076|ref|XP_001556363.1| hypothetical protein BC1G_04981 [Botryotinia fuckeliana B05.10]
Length = 490
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 172/312 (55%), Gaps = 35/312 (11%)
Query: 20 EEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAA 79
EE+ E ++S+ W EL L + ++ ++GF +PTPIQ IP G D++G A
Sbjct: 197 EEDAAKEVDVSS----WEELDLSSNTLSALSKMGFSKPTPIQSEAIPEVL-AGHDVVGKA 251
Query: 80 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV 139
TGSGKTLAFG+PI+++ LE A L+E + P ALI++PTRELA Q+
Sbjct: 252 STGSGKTLAFGIPIVEKWLE----AYGELDEDELKKNTRPP----TALILSPTRELAHQL 303
Query: 140 TDHLKEVAKGINVR--VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
T+H+ + KG+ V + GG+S +KQ+R L A+ ++++GTPGRLWE +S +
Sbjct: 304 TEHITALCKGMPTSPWVAAVTGGLSVQKQQRQL-AKADIIIGTPGRLWEGISSSNELSAS 362
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
L + F V+DEADR++ +GHF+E + I++ L T+G + RQ
Sbjct: 363 LKQVRFLVIDEADRLLTDGHFKEAEEILNALDRTHG----------DEDDEEEDELPPRQ 412
Query: 258 TLVFSATIALSADFRKKLKHG-SLKLKQSV-NGLNSIETLSERAGMR-ANVAIVDLTNVS 314
TLVFSAT F K L+ + K KQS + S+E L ++ R VD+ +S
Sbjct: 413 TLVFSAT------FHKGLQQKLAGKGKQSFKDESQSMEYLLKKLNFREEKPKFVDVNPIS 466
Query: 315 VLANKLEESFIE 326
+A L+E +E
Sbjct: 467 QMAANLKEGMVE 478
>gi|147904244|ref|NP_001082400.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Xenopus laevis]
gi|50418383|gb|AAH77543.1| LOC398446 protein [Xenopus laevis]
Length = 706
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 174/358 (48%), Gaps = 72/358 (20%)
Query: 19 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
+E L + + + AW L + +++K++ LGF PTPIQ +P+A DI+GA
Sbjct: 94 SENALAHTSSKNADVSAWKNLHVPKVVLKALSFLGFTCPTPIQALALPSAIRDKMDILGA 153
Query: 79 AETGSGKTLAFGLPIM------QRLLEEREKAGKMLEE--------------------KG 112
AETGSGKTLAF +P++ Q+ E G+ EE +
Sbjct: 154 AETGSGKTLAFAIPMIHSILEWQKHQESGAAEGETKEEPTSDVNNEIDATEKQEQDMSEN 213
Query: 113 EEAEK-------------------------YAPKGHLRALIITPTRELALQVTDHLKEVA 147
E+ E+ + + L L++TPTRELA+QV H+ VA
Sbjct: 214 EDVEQVEDNDDVSENFDINFNDMSSSKSGTWGKERPLLGLVVTPTRELAVQVKHHIDAVA 273
Query: 148 KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 207
K ++ IVGGM+++KQ+RLL RPE+V+ TPGRLWEL+ HL L L V+D
Sbjct: 274 KFTGIKTAIIVGGMASQKQQRLLGRRPEIVIATPGRLWELIGERHPHLCNLRRLRCLVID 333
Query: 208 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267
EADRM+E GH+ EL ++++L + + KRQT VFSAT+ L
Sbjct: 334 EADRMVEKGHYAELSQLLELLSEVHYN-------------------PKRQTFVFSATLTL 374
Query: 268 SADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
+L K Q V+ + + +L E+ GM+A ++DLT L E+ I
Sbjct: 375 IHQAPTRLLQK--KRFQKVDKDSKLVSLMEKIGMKAKPKVIDLTRKQATVETLTETRI 430
>gi|17507641|ref|NP_491652.1| Protein F55F8.2, isoform a [Caenorhabditis elegans]
gi|351063669|emb|CCD71883.1| Protein F55F8.2, isoform a [Caenorhabditis elegans]
Length = 746
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 161/286 (56%), Gaps = 35/286 (12%)
Query: 31 TEFDAWNELRLHP-LLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
T+ AW + P ++++I ++GF EPT IQ A +PAA +D++GAAETGSGKTLAF
Sbjct: 151 TDISAWKQFYFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAF 210
Query: 90 GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 149
G+P++ RLLE + + ++ E E P RALI+ PTREL +Q+ H+ +
Sbjct: 211 GIPLVARLLESSDDS-----QETESTEVRGP----RALIVAPTRELVIQIMKHINALIST 261
Query: 150 INVRVVPIVGGMSTEKQERLL-KARPELVVGTPGRLWELMSGGE--KHLVELHTLSFFVL 206
+ IVGG++ KQER++ + RP++VV TPGRLW +M E + L E L V+
Sbjct: 262 TQLIATSIVGGLAQVKQERIISQQRPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVV 321
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
DE DRM+E G+F EL I++ + E++ +++K QTLVFSAT+
Sbjct: 322 DETDRMVEEGYFAELTHILNKI----------HEES---------EKEKLQTLVFSATLT 362
Query: 267 LSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANV-AIVDLT 311
+ + + K + ++ I+ L + G+R N ++DLT
Sbjct: 363 FAK--AQDVAEEEKKKAKELSSQQKIQRLIKLTGLRENKHKVIDLT 406
>gi|171682200|ref|XP_001906043.1| hypothetical protein [Podospora anserina S mat+]
gi|170941059|emb|CAP66709.1| unnamed protein product [Podospora anserina S mat+]
Length = 761
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 177/315 (56%), Gaps = 35/315 (11%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
PD EE V +E W L L P L+ +I L F +PTPIQ IP + G D+
Sbjct: 176 PDIEPEEDVDTSE-------WAPLELSPDLVAAIGNLRFGKPTPIQARAIPEIIN-GHDV 227
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135
IG A TGSGKTLAFG+PI+++ L + + +G E EK H A+I++PTREL
Sbjct: 228 IGKASTGSGKTLAFGIPIVEKWLAK--------QAEGNEDEKK----HPIAMILSPTREL 275
Query: 136 ALQVTDHLKEVAKGI--NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193
A Q++DHLK+++ G+ + + + GG++ +KQ R L+ + ++++GTPGRLWE++S
Sbjct: 276 AHQISDHLKKLSDGLTESPYICSVTGGLAIQKQLRQLE-KADIIIGTPGRLWEVISTEIA 334
Query: 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQR 253
+ + + F V+DEADR++++G F+E + II L T E + + + +
Sbjct: 335 VMNSIRQIDFLVVDEADRLLKDGQFKEAEDIIKALDRTRPGEEAEED---SDSDEEPTPK 391
Query: 254 KKRQTLVFSATIALSADFRKKLKHG-SLKLKQSVNG-LNSIETLSERAGMR-ANVAIVDL 310
RQTLVFSAT F K L+ + K + ++ G S+E L ++ R A +D
Sbjct: 392 HNRQTLVFSAT------FNKALQQKLAGKARYNLMGEAESLEHLLKKLNFREAKPKFIDA 445
Query: 311 TNVSVLANKLEESFI 325
VS +A+KL+E I
Sbjct: 446 NPVSQMADKLKEGLI 460
>gi|255932267|ref|XP_002557690.1| Pc12g08600 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582309|emb|CAP80487.1| Pc12g08600 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 719
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 169/297 (56%), Gaps = 21/297 (7%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW+ L L P ++ ++ F P+ IQKA IPA G D++G A TGSGKTLAFG+PI+
Sbjct: 141 AWDGLNLSPETFTALSKMKFSSPSAIQKASIPAIL-DGHDVVGKASTGSGKTLAFGIPII 199
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV---AKGIN 151
+ L++R K ++G+ + K + ALI++PTRELA Q+ H+ E+ + N
Sbjct: 200 EHYLDQRGK------QEGQSDKSEKNKSPI-ALILSPTRELAHQLGKHIGELIANSPDTN 252
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
RV I GGMS +KQ+R L A ++V+GTPGR+WE++S G + ++ + F V+DEADR
Sbjct: 253 ARVALITGGMSIQKQQRQL-ATADIVIGTPGRVWEILSTGTGLIRKMQKIQFLVVDEADR 311
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
++ GHF+E++ I++ L + ++ + S+ RQTLVFSAT D
Sbjct: 312 LLSEGHFKEMEHILNALDKHQAGDIADMDEEEEEEEPSN-----RQTLVFSAT--FHKDL 364
Query: 272 RKKLKHGS-LKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
++KL S + ++ S+E L ++ R +D+ S +A L+E +E
Sbjct: 365 QQKLAGKSRWTSGEMLDNKESMEYLLKKLNFREEKPKFIDVNPESQMAVGLKEGIVE 421
>gi|27882644|gb|AAH43900.1| LOC398446 protein, partial [Xenopus laevis]
Length = 660
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 174/358 (48%), Gaps = 72/358 (20%)
Query: 19 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
+E L + + + AW L + +++K++ LGF PTPIQ +P+A DI+GA
Sbjct: 183 SENALAHTSSKNADVSAWKNLHVPKVVLKALSFLGFTCPTPIQALALPSAIRDKMDILGA 242
Query: 79 AETGSGKTLAFGLPIM------QRLLEEREKAGKMLEE--------------------KG 112
AETGSGKTLAF +P++ Q+ E G+ EE +
Sbjct: 243 AETGSGKTLAFAIPMIHSILEWQKHQESGAAEGETKEEPTSDVNNEIDATEKQEQDMSEN 302
Query: 113 EEAEK-------------------------YAPKGHLRALIITPTRELALQVTDHLKEVA 147
E+ E+ + + L L++TPTRELA+QV H+ VA
Sbjct: 303 EDVEQVEDNDDVSENFDINFNDMSSSKSGTWGKERPLLGLVVTPTRELAVQVKHHIDAVA 362
Query: 148 KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 207
K ++ IVGGM+++KQ+RLL RPE+V+ TPGRLWEL+ HL L L V+D
Sbjct: 363 KFTGIKTAIIVGGMASQKQQRLLGRRPEIVIATPGRLWELIGERHPHLCNLRRLRCLVID 422
Query: 208 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267
EADRM+E GH+ EL ++++L + + KRQT VFSAT+ L
Sbjct: 423 EADRMVEKGHYAELSQLLELLSEVHYN-------------------PKRQTFVFSATLTL 463
Query: 268 SADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
+L K Q V+ + + +L E+ GM+A ++DLT L E+ I
Sbjct: 464 IHQAPTRLLQK--KRFQKVDKDSKLVSLMEKIGMKAKPKVIDLTRKQATVETLTETRI 519
>gi|393245470|gb|EJD52980.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 736
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/276 (38%), Positives = 145/276 (52%), Gaps = 35/276 (12%)
Query: 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
E V+ + + W LH L +++ F PT IQ IP A +G+DIIG AE
Sbjct: 122 EPFVTAFDTKGQLPEWAPFNLHAQLAAALHHKKFASPTSIQSQAIPKAV-EGRDIIGVAE 180
Query: 81 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVT 140
TGSGKTLA+GLPI+ LL + + KG +RAL++ PTRELALQV
Sbjct: 181 TGSGKTLAYGLPILHHLL----TTPRPPKSKGRRP--------VRALVLAPTRELALQVA 228
Query: 141 DHLKEV------------------AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPG 182
HLK AK V V IVGGMS +KQ R+L+ +++V TPG
Sbjct: 229 AHLKACLVDPIKKEEDTDDKPKGPAKPPAVSVAAIVGGMSAQKQRRVLERGVDVLVATPG 288
Query: 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQT 242
RLW+++S + +++ L F VLDEADRMI+ GHF EL +I+ + + E +
Sbjct: 289 RLWDILSEDDALALQIKRLKFLVLDEADRMIQAGHFAELDNILKLTVRVDMPEEDAHDAL 348
Query: 243 QTCVTVSSLQRKKR--QTLVFSATIALSADFRKKLK 276
+ SS + K QT VFSAT LS D ++ LK
Sbjct: 349 EDFKKASSAEGKNEDVQTFVFSAT--LSKDLQRNLK 382
>gi|336466285|gb|EGO54450.1| hypothetical protein NEUTE1DRAFT_87798 [Neurospora tetrasperma FGSC
2508]
Length = 808
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/313 (36%), Positives = 163/313 (52%), Gaps = 40/313 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W L L P ++ SI +L F +PT IQ IP G D+IG A TGSGKTLAFG+P+++
Sbjct: 208 WVPLDLSPRMISSIAKLRFSKPTVIQSKAIPEI-MAGHDVIGKASTGSGKTLAFGIPVIE 266
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV--R 153
L E + EE+ KG ALI++PTRELA Q+ DHL+ + KG+
Sbjct: 267 SWLSAAETRKQNKEER---------KGAT-ALILSPTRELAQQIRDHLQALCKGLPTAPY 316
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+ ++GGM+ +KQ+R L+ ++V+ TPGR+WE+MS L L +SF VLDEADR++
Sbjct: 317 ICSVLGGMAVQKQKRQLQV-ADIVIATPGRMWEVMSSDNSVLASLRNISFLVLDEADRLL 375
Query: 214 ENGHFRELQSIIDML--PMTNGSNEGQS-------------------EQTQTCVTVSSLQ 252
++GHF+E + I L P +NE Q E+ +
Sbjct: 376 KDGHFKEAEEIFKALDRPPVEENNEDQKMGGTDEEGQEEEEEDSEEEEEEEEEEEEEEEH 435
Query: 253 RKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTN 312
KRQTL+FSAT + + ++KL G K K + +E L ++ R VD
Sbjct: 436 VNKRQTLIFSAT--FNKNLQQKL-AGKSKFKAT--STQDMEYLLQKLNFRETPKFVDANP 490
Query: 313 VSVLANKLEESFI 325
V +A L+E I
Sbjct: 491 VHQMAENLKEGLI 503
>gi|302676285|ref|XP_003027826.1| hypothetical protein SCHCODRAFT_70633 [Schizophyllum commune H4-8]
gi|300101513|gb|EFI92923.1| hypothetical protein SCHCODRAFT_70633 [Schizophyllum commune H4-8]
Length = 651
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 105/262 (40%), Positives = 144/262 (54%), Gaps = 37/262 (14%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKAC-IPAAAHQGKDIIGAAETGSGKT 86
+ T + W LHP L+K++ F +PTPIQ A IPA A G+D++G A+TGSGKT
Sbjct: 72 DTPTSLEEWEPYALHPQLLKTLQARNFLKPTPIQAAALIPALA--GRDVVGVAQTGSGKT 129
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
LA+GLPI+ LLE K+ GE K +RALI+ PTRELALQV+ HL
Sbjct: 130 LAYGLPILHHLLENPHKSTT-----GE-------KRPVRALILAPTRELALQVSSHLNAC 177
Query: 147 AKGIN------------VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
+ V V +VGGMS +KQ+R+L +++V TPGRLW+++ +
Sbjct: 178 LNTNSDAQTNAKKPPPPVSVAALVGGMSLQKQKRILGRGVDVLVATPGRLWDVIQEDDDL 237
Query: 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 254
+ L F VLDEADRMIE GHF EL +++ + N +E + + +
Sbjct: 238 ARSIKNLKFLVLDEADRMIEAGHFAELDNVLRLTLRANKYDEREDDDENI--------QD 289
Query: 255 KRQTLVFSATIALSADFRKKLK 276
QT VFSAT LS D ++ LK
Sbjct: 290 GLQTFVFSAT--LSKDLQRNLK 309
>gi|242764605|ref|XP_002340809.1| ATP dependent RNA helicase, putative [Talaromyces stipitatus ATCC
10500]
gi|218724005|gb|EED23422.1| ATP dependent RNA helicase, putative [Talaromyces stipitatus ATCC
10500]
Length = 765
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 162/302 (53%), Gaps = 25/302 (8%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW+ L L P L S+ +L F P+ IQ+A IP G D++G A TGSGKTLAFG+PI+
Sbjct: 183 AWDSLGLSPALQTSLSKLKFSTPSTIQQAVIPEVL-AGHDVVGKASTGSGKTLAFGIPIL 241
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH---LKEVAKGIN 151
+ L R + G E+K +E++ A LI++PTRELA Q+ H L N
Sbjct: 242 EYYLGTRGQHGTPKEKKKKESQPIA-------LILSPTRELAHQLAKHIGTLNSHTPAAN 294
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
R+ + GG++ +KQ+RLL A ++V+GTPGR+WE++S G + + + + VLDEADR
Sbjct: 295 ARIALLTGGLAIQKQQRLL-ADADIVIGTPGRVWEILSSGTGLIQRMSRVKYLVLDEADR 353
Query: 212 MIENGHFRELQSIIDMLPMT-NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
++ +GH++EL+ I+D L + S RQTLVFSAT
Sbjct: 354 LLSDGHYKELEEILDALDRKEDNEEAEDSPSESEEDEEKEDATVARQTLVFSAT------ 407
Query: 271 FRKKLKH---GSLKLKQS--VNGLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEESF 324
F K L+ G K S +N S+E L + R +D+ +S +A L+E
Sbjct: 408 FHKGLQQKLSGKGKFMSSDLMNKSESMEYLLRKLKFREEKPKFIDVNPISQMAQGLKEGI 467
Query: 325 IE 326
+E
Sbjct: 468 LE 469
>gi|367029791|ref|XP_003664179.1| hypothetical protein MYCTH_2306707 [Myceliophthora thermophila ATCC
42464]
gi|347011449|gb|AEO58934.1| hypothetical protein MYCTH_2306707 [Myceliophthora thermophila ATCC
42464]
Length = 785
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 161/297 (54%), Gaps = 30/297 (10%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W L L P ++ +I RL F +PT IQ IP + G D+IG A TGSGKTLAFG+PI++
Sbjct: 203 WVPLGLSPQVLSAIARLKFAKPTAIQAKAIPHIMN-GHDLIGKAATGSGKTLAFGIPIVE 261
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV--R 153
L R +A + +K P ALI++PTRELA Q+ DHLKE+ G+
Sbjct: 262 SWLARRAEA--------QTTDKKQPI----ALILSPTRELAHQIRDHLKELCAGLTTGPY 309
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
V + GG++ +KQ+R + + +++VGTPGR+WEL S L L +SF V+DEADR++
Sbjct: 310 VCSVTGGLAVQKQQRQFE-KADILVGTPGRMWELASSSNSVLGALRGISFLVVDEADRLL 368
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
++GHF+E + I++ L E ++ + R RQTLVFSAT F K
Sbjct: 369 KDGHFKEAEEIMNALDRKAPGEEVVEDEGDSD---DETPRHNRQTLVFSAT------FNK 419
Query: 274 KLKHGSLKLKQSVNGLN---SIETLSERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
L+ L K N + S+E L ++ R VD VS +A L E I+
Sbjct: 420 NLQQ-KLAGKARYNLMGDAESLEYLLKKLNFREPRPKFVDTNPVSQMAENLREGLIQ 475
>gi|170100044|ref|XP_001881240.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643919|gb|EDR08170.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 616
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 149/271 (54%), Gaps = 47/271 (17%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W++ LHP L ++++ F PTPIQ+A +P A G+D+IG A+TGSGKTLA+GLPI+
Sbjct: 31 WHKYSLHPQLSRALHAKSFLSPTPIQEAALPMAL-AGRDVIGVAQTGSGKTLAYGLPILH 89
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI----- 150
+L + + + K K LRAL++ PTRELALQV+ HL + +
Sbjct: 90 HILSQPKPSPKT-------------KRPLRALVLAPTRELALQVSSHLNALLNHLEDFSS 136
Query: 151 ------------------------NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 186
+V V IVGGMS++KQ R+L ++++ TPGRLW+
Sbjct: 137 EKTVKNSSKPATTDGKTPAKKPPPHVSVAAIVGGMSSQKQRRILDRGVDVLIATPGRLWD 196
Query: 187 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNG--SNEGQSEQTQT 244
LM + E+ + F VLDEADRMIE GHF EL++I+ + + +++G+ +
Sbjct: 197 LMEDDDTLAREIKNIRFLVLDEADRMIEAGHFAELENILRLTLRESACFNDDGEPIHVEE 256
Query: 245 CVTVSSLQRKKRQTLVFSATIALSADFRKKL 275
+ +++ QT VFSAT LS D ++ L
Sbjct: 257 EDSKEGIKKDDLQTFVFSAT--LSKDLQRNL 285
>gi|396475407|ref|XP_003839779.1| similar to ATP-dependent RNA helicase MAK5 [Leptosphaeria maculans
JN3]
gi|312216349|emb|CBX96300.1| similar to ATP-dependent RNA helicase MAK5 [Leptosphaeria maculans
JN3]
Length = 826
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 180/320 (56%), Gaps = 36/320 (11%)
Query: 11 VVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH 70
++++ P D ++E+ + AW EL L ++ ++ +L F++PT IQ + IP
Sbjct: 234 ILADQPIDDDDEV--------DVSAWEELNLSEQVLDALAKLNFQKPTEIQASTIPEIM- 284
Query: 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130
G+D+IG A TGSGKTLAFG+PI++ L + ++++ + P ALI+
Sbjct: 285 AGRDVIGKASTGSGKTLAFGIPIIESFLSAQPGL--------KDSKDHTPI----ALIVA 332
Query: 131 PTRELALQVTDHLKEVA-KG-INV-RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187
PTRELA Q+T HL + KG N + I GG+S +KQ R L+ + ++VVGTPGRLWE+
Sbjct: 333 PTRELAHQITAHLIALCTKGDFNAPHIASITGGLSVQKQRRQLE-KADIVVGTPGRLWEV 391
Query: 188 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVT 247
+S G+ L + + F V+DEADR++ +GH++EL I+ +L + + +G+++ +
Sbjct: 392 ISTGQGLLEKFKQIRFLVIDEADRLLSDGHYQELGDILKILEPDSEAVDGENDDATPELN 451
Query: 248 VSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMR-ANVA 306
RQTLVFSAT S ++KL S K ++ S+E L ++ R
Sbjct: 452 --------RQTLVFSATFGKS--LQQKLAGKSRPDKAEMSQQASMEYLLKKLKFREEKPK 501
Query: 307 IVDLTNVSVLANKLEESFIE 326
+D S +ANKL+E IE
Sbjct: 502 FIDANPNSQMANKLKEGLIE 521
>gi|320581609|gb|EFW95829.1| Essential nucleolar protein, putative DEAD-box RNA helicase
[Ogataea parapolymorpha DL-1]
Length = 705
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 158/293 (53%), Gaps = 43/293 (14%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+ L L ++ + +LGF++PT IQKA IP A GKD+IG A TGSGKTLA+G+PI++
Sbjct: 160 WSSLNLSASTLQGLQKLGFQKPTEIQKATIPLAV-DGKDVIGKAITGSGKTLAYGIPILE 218
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI---NV 152
+ L +++ HL +I TPTRELA QV HL+E+ K +
Sbjct: 219 KALSNKQE-------------------HLNGIIFTPTRELANQVMKHLQELFKYTPFHDK 259
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
V+ + GG+S +KQERLL +P +VV TPGR E++ ++ V+L + V DEADR+
Sbjct: 260 AVISLTGGLSIQKQERLLGYKPRVVVATPGRFLEILEKKTENAVQLASADILVCDEADRL 319
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272
+++GHF EL I+++L +G K Q+LVFSAT S D
Sbjct: 320 LQDGHFDELGKILEILHNHRPKVQGH----------------KFQSLVFSAT--FSQDLF 361
Query: 273 KKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
KL+ + S + ++ LS+ R+ VD+ ++A+ + E+ I
Sbjct: 362 GKLEKAKKHVFDSEQAI--VKMLSKHLKFRSKPEYVDVNPTEIVAHSITEAMI 412
>gi|406696280|gb|EKC99572.1| ATP dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 779
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 162/307 (52%), Gaps = 36/307 (11%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW ++ LH L K + LGF PT IQK +P A +G+D++G AET TLA+ LP++
Sbjct: 177 AWAKIPLHASLKKCLLGLGFANPTEIQKQAVPLAL-EGRDVVGVAET----TLAYSLPVL 231
Query: 95 QRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN-- 151
LL + +AGK K L ALI+ PTRELA+QVTDHL V K +
Sbjct: 232 SYLLRQPPPRAGK--------------KRPLSALILCPTRELAIQVTDHLTNVVKSVTPE 277
Query: 152 ------VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
+ V +VGG+S KQ R+L +++V TPGRLW+L+ + L TL F +
Sbjct: 278 GAKVPRISVGSVVGGLSAHKQRRILDRGADILVATPGRLWDLVKTDDALAASLRTLRFLI 337
Query: 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQ----RKKRQTLVF 261
+DEADRMIENGHF EL+ I+ + T E + + ++L+ R QT VF
Sbjct: 338 VDEADRMIENGHFAELEHIVQLSRRTQVQAEDEDDDPVFAQMATALEQAEPRDDLQTFVF 397
Query: 262 SATIALSADFRKKLKHGSLKLKQSVNGLNS-IETLSERAGMRANV-AIVDLTNVSVLANK 319
SAT LS D ++ LK + + + S ++ L E R AIVDLT +
Sbjct: 398 SAT--LSKDLQENLKKRRRRPLKRKSKRASTLDELLETLDFRDETPAIVDLTPKGNKVST 455
Query: 320 LEESFIE 326
L E+ ++
Sbjct: 456 LREAMVD 462
>gi|406602865|emb|CCH45589.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 775
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 161/304 (52%), Gaps = 48/304 (15%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW+ L L ++ + L F +PTPIQK CIP + +G DIIG A TGSGKTLA+G+
Sbjct: 202 DLPAWSNLDLSTYTLQGLSHLNFTKPTPIQKKCIPICS-EGNDIIGKASTGSGKTLAYGI 260
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI- 150
PI++RL+ ++ P G +I TPTRELA QV DHL +++K
Sbjct: 261 PILERLVSLKDPK--------------FPAG----VIFTPTRELAHQVVDHLNKISKFFP 302
Query: 151 --NVRVVPIVGGMSTEKQERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
++ + GG+S +KQER+LK +++V TPGR EL+ + ++ L VL
Sbjct: 303 SHQSSILSLTGGLSIQKQERILKYENSGQIIVATPGRFLELIERNGEFAKKVSNLEILVL 362
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
DEADR++++GHF E + I+ +L + + ++ K Q+LVFSAT A
Sbjct: 363 DEADRLLQDGHFDEFEQILKIL------------------STNRTKQDKWQSLVFSATFA 404
Query: 267 LSADFRKKLKHGSLKLKQSVNGLNS----IETLSERAGMRANVAIVDLTNVSVLANKLEE 322
+ + KL H K K + L+ I+ L+E+ +DL LAN++ E
Sbjct: 405 V--ELFSKLVHQGYKPKDEPSKLDEREQIIKILNEKIKFSKKPEFIDLNPNQKLANEITE 462
Query: 323 SFIE 326
+ +E
Sbjct: 463 TMVE 466
>gi|401883813|gb|EJT48000.1| ATP dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
Length = 779
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 161/307 (52%), Gaps = 36/307 (11%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW ++ LH L K + LGF PT IQK +P A +G+D++G AET TLA+ LP++
Sbjct: 177 AWAKIPLHASLKKCLLGLGFANPTEIQKQAVPLAL-EGRDVVGVAET----TLAYSLPVL 231
Query: 95 QRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN-- 151
LL + +AGK K L ALI+ PTRELA+QVTDHL V K +
Sbjct: 232 SYLLRQPPPRAGK--------------KRPLSALILCPTRELAIQVTDHLTNVVKSVTPE 277
Query: 152 ------VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
+ V +VGG+S KQ R+L +++V TPGRLW+L+ + L TL F +
Sbjct: 278 GAKVPRISVGSVVGGLSAHKQRRILDRGADILVATPGRLWDLVKTDDALAASLRTLRFLI 337
Query: 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQ----RKKRQTLVF 261
+DEADRMIENGHF EL+ I+ + T E + + ++L+ R QT VF
Sbjct: 338 VDEADRMIENGHFAELEHIVQLSRRTQVQAEDEDDDPVFAQMATALEQAEPRDDLQTFVF 397
Query: 262 SATIALSADFRKKLKHGSLKLKQSVNGLNS-IETLSERAGMRANV-AIVDLTNVSVLANK 319
SAT LS D ++ LK + + S ++ L E R AIVDLT +
Sbjct: 398 SAT--LSKDLQENLKKRRRRPLKRKGKRASTLDELLETLDFRDETPAIVDLTPKGNKVST 455
Query: 320 LEESFIE 326
L E+ ++
Sbjct: 456 LREAMVD 462
>gi|342886208|gb|EGU86105.1| hypothetical protein FOXB_03374 [Fusarium oxysporum Fo5176]
Length = 774
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/329 (35%), Positives = 176/329 (53%), Gaps = 41/329 (12%)
Query: 8 TVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPA 67
T +++ D A++E V A AW L L P ++ +I +L F +PT IQ+ IP
Sbjct: 183 TFGALADANDYADQEDVDMA-------AWVPLNLSPQILSAIAKLKFTKPTLIQEKTIPE 235
Query: 68 AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127
G D+IG A+TGSGKTLAFG+P+++R LE L+E+G E+ P A+
Sbjct: 236 ILA-GDDVIGKAQTGSGKTLAFGIPMVERWLE--------LQEQG--VERTGP----MAV 280
Query: 128 IITPTRELALQVTDHLKEVAKGINV--RVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 185
+++PTRELA Q+ DHLK + G+ V + GG+S +KQ+R L+ + ++V+GTPGRLW
Sbjct: 281 VLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSIQKQQRQLE-KADIVIGTPGRLW 339
Query: 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEG-------- 237
E++SG + + F V+DEADR+ + G F+E + II L +G + G
Sbjct: 340 EVLSGDRALQSKFAKIKFLVVDEADRLFKVGQFKEAEDIIGAL---DGKSPGDDAESSDE 396
Query: 238 QSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSE 297
++ + R RQTLVFSAT D + KL + K K + N + L +
Sbjct: 397 DEDEDEDDDDEEDDDRNARQTLVFSAT--FDKDLQTKL---AGKGKSTGNDEEKMAYLMK 451
Query: 298 RAGMRANVAIVDLTNVSVLANKLEESFIE 326
R +D+ VS +A L+E IE
Sbjct: 452 CLKFRGEPKFIDVNPVSQMAQGLKEGLIE 480
>gi|440296216|gb|ELP89056.1| ATP-dependent RNA helicase mak5, putative [Entamoeba invadens IP1]
Length = 606
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 151/262 (57%), Gaps = 50/262 (19%)
Query: 16 PDDAEEELVSEAEISTEFDAWNEL-RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKD 74
P+ EEE +S+A++ E W +L ++ +++++Y LGF PT IQK IP A KD
Sbjct: 44 PNAMEEEPISDADLYIEMKEWRKLYKIDITILRALYDLGFIYPTEIQKFAIPKALTSQKD 103
Query: 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL---RALIITP 131
+IG+A TGSGKTL+F +P++QR +E KG + LI+ P
Sbjct: 104 LIGSAPTGSGKTLSFLIPLVQRFIE---------------------KGTFDTTQCLILVP 142
Query: 132 TRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
TRELA+Q+ DHL+++ K + V +VGG+++ KQ RLL P +V+GTPGR++EL +
Sbjct: 143 TRELAVQIRDHLQKLTKYLPRVTSCVVVGGLASVKQVRLLLQEPTIVIGTPGRIFELYNN 202
Query: 191 GEKHLVE-LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVS 249
+ +++ L +L + V+DEADRM+E GHF EL+ + VTV
Sbjct: 203 QDTPVLKTLPSLPYLVVDEADRMVEPGHFSELKDL---------------------VTVV 241
Query: 250 SLQRKKRQTLVFSATIALSADF 271
S ++QT VFSAT+ L+A+
Sbjct: 242 S--NAEKQTFVFSATMQLAAEM 261
>gi|397573945|gb|EJK48944.1| hypothetical protein THAOC_32221 [Thalassiosira oceanica]
Length = 980
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 130/199 (65%), Gaps = 14/199 (7%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
LH L + ++ L + PTPIQ + +PAA +DI+GAA TGSGKTL++GLPI+Q LL+E
Sbjct: 254 LHETLSRGLHSLKYSYPTPIQASTLPAAILGRRDIVGAAPTGSGKTLSYGLPILQYLLDE 313
Query: 101 REKA-----GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
R+ + G E E + L+ALI+TPTRELALQVT L++V+ +V++
Sbjct: 314 RDASASRSCGVATPESTRE------RLPLQALILTPTRELALQVTSELQKVSCN-SVKIG 366
Query: 156 PIVGGMSTEKQERLL-KARPELVVGTPGRLWELMSGGE-KHLVELHTLSFFVLDEADRMI 213
IVGG + KQ+R L K RP ++V TPGRLWELMS + +HL +L L F +DEADRMI
Sbjct: 367 TIVGGFAEVKQQRTLNKVRPPVLVATPGRLWELMSSKDYEHLNDLTQLRFLCVDEADRMI 426
Query: 214 ENGHFRELQSIIDMLPMTN 232
+ G F +L+ I +++ N
Sbjct: 427 KQGSFPQLRQIFELIDAAN 445
>gi|302890093|ref|XP_003043931.1| hypothetical protein NECHADRAFT_99434 [Nectria haematococca mpVI
77-13-4]
gi|256724850|gb|EEU38218.1| hypothetical protein NECHADRAFT_99434 [Nectria haematococca mpVI
77-13-4]
Length = 760
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 165/294 (56%), Gaps = 24/294 (8%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW L L P ++ +I +LGF +PT IQ+ IP G+D+IG A+TGSGKTLAFG+P++
Sbjct: 195 AWVPLNLSPQILSAIAKLGFTKPTLIQEKTIPEIV-SGEDVIGKAQTGSGKTLAFGIPMV 253
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVR 153
++ LE L E+G E+ P +++++PTRELA Q+ DHLK + G+ N
Sbjct: 254 EKWLE--------LYEQG--VERTGP----MSVVLSPTRELAKQLGDHLKALCDGLSNAP 299
Query: 154 VVPIV-GGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
V +V GG+S +KQ+R L+ + ++V+GTPGRLWE++SG + F V+DEADR+
Sbjct: 300 YVCVVTGGLSIQKQQRQLE-KADIVIGTPGRLWEVLSGDATLQNTFSKIRFLVVDEADRL 358
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272
+ G F+E + II L ++ + +R RQTLVFSAT D +
Sbjct: 359 FKVGQFKEAEDIIGALDGKR-PSDDADSSDEEDDEEEDDERSARQTLVFSAT--FDKDLQ 415
Query: 273 KKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
KL + K K + N + L + R +D+ VS +A+ L+E IE
Sbjct: 416 TKL---AGKGKSTGNDEEKMAYLMKCLKFRGEPKFIDVNPVSQMADGLKEGLIE 466
>gi|68482156|ref|XP_714962.1| hypothetical protein CaO19.11024 [Candida albicans SC5314]
gi|68482283|ref|XP_714899.1| hypothetical protein CaO19.3540 [Candida albicans SC5314]
gi|74656286|sp|Q59ZH9.1|MAK5_CANAL RecName: Full=ATP-dependent RNA helicase MAK5
gi|46436498|gb|EAK95859.1| hypothetical protein CaO19.3540 [Candida albicans SC5314]
gi|46436563|gb|EAK95923.1| hypothetical protein CaO19.11024 [Candida albicans SC5314]
Length = 782
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 108/317 (34%), Positives = 177/317 (55%), Gaps = 38/317 (11%)
Query: 16 PDDAEEELVS--EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
PDD E L + E ++ + A+ + + +L FK+PTPIQK IP A GK
Sbjct: 185 PDDNEINLPNWQEGDLGSSISAYT--------LYGLSQLDFKKPTPIQKETIPIAL-SGK 235
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133
D+IG A TGSGKTLA+G+PI+++ ++ + ++++ ++ + P G +I PTR
Sbjct: 236 DVIGKATTGSGKTLAYGIPILEKYIQ----SLNLIKQNNKDKKINHPTG----IIFAPTR 287
Query: 134 ELALQVTDHLKEVAK--GINVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
ELA QV DHL ++AK ++ R +V I GG+S +KQ+RLL+ P ++V TPGR+ EL+ G
Sbjct: 288 ELAHQVVDHLNKLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVATPGRMLELVQG 347
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
+ L ++ VLDEADR++++GHF E + I+++ G N +S+ +
Sbjct: 348 DSELAKRLASIDIIVLDEADRLLQDGHFDEFEKILELF----GKNRPKSKSIEW------ 397
Query: 251 LQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVD 309
K QTLVFSAT + FRK +H K + ++ L+E+ + +VD
Sbjct: 398 ----KWQTLVFSATFSRDL-FRKLDRHQKGKSSSLMGNDEIVQLLNEKLKFKDKKPTLVD 452
Query: 310 LTNVSVLANKLEESFIE 326
+++ ++ E+ +E
Sbjct: 453 ANPKEIVSGQITEALVE 469
>gi|408393250|gb|EKJ72515.1| hypothetical protein FPSE_07152 [Fusarium pseudograminearum CS3096]
Length = 781
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 174/323 (53%), Gaps = 35/323 (10%)
Query: 8 TVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPA 67
T +++G D ++E V A AW L L P ++ +I +L F +PT IQK IP
Sbjct: 196 TFGALADGNDYKDQEDVDMA-------AWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPE 248
Query: 68 AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127
G D+IG A+TGSGKTLAFG+P+++R LE ++E+G ++ P +L
Sbjct: 249 IVA-GHDVIGKAQTGSGKTLAFGIPMVERWLE--------MQEQG--VKRTGP----MSL 293
Query: 128 IITPTRELALQVTDHLKEVAKGINV--RVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 185
+++PTRELA Q+ DHLK + G+ V + GG+S KQ+R L+ + ++V+GTPGRLW
Sbjct: 294 VLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQRQLE-KADIVIGTPGRLW 352
Query: 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTC 245
E++SG + + F V+DEADR+ + G F+E + II L +G + G +++
Sbjct: 353 EVLSGDRALQSKFAKIRFLVVDEADRLFKVGQFKEAEDIIGAL---DGKSPGDDAESEEE 409
Query: 246 VTVSSLQRK--KRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA 303
+ RQTLVFSAT D + KL + K K S N + L + R
Sbjct: 410 SEDEDEDDEGAARQTLVFSAT--FDKDLQTKL---AGKGKSSGNDDEKMAYLMKCLKFRG 464
Query: 304 NVAIVDLTNVSVLANKLEESFIE 326
+D+ VS +A L E IE
Sbjct: 465 EPKFIDVNPVSQMAEGLREGLIE 487
>gi|410516913|sp|Q4IBS2.2|MAK5_GIBZE RecName: Full=ATP-dependent RNA helicase MAK5
Length = 781
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 174/323 (53%), Gaps = 35/323 (10%)
Query: 8 TVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPA 67
T +++G D ++E V A AW L L P ++ +I +L F +PT IQK IP
Sbjct: 196 TFGALADGNDYKDQEDVDMA-------AWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPE 248
Query: 68 AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127
G D+IG A+TGSGKTLAFG+P+++R LE ++E+G ++ P +L
Sbjct: 249 IVA-GHDVIGKAQTGSGKTLAFGIPMVERWLE--------MQEQG--VKRTGP----MSL 293
Query: 128 IITPTRELALQVTDHLKEVAKGINV--RVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 185
+++PTRELA Q+ DHLK + G+ V + GG+S KQ+R L+ + ++V+GTPGRLW
Sbjct: 294 VLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQRQLE-KADIVIGTPGRLW 352
Query: 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEG--QSEQTQ 243
E++SG + + F V+DEADR+ + G F+E + II L +G + G + +
Sbjct: 353 EVLSGDRALQSKFAKIRFLVVDEADRLFKVGQFKEAEDIIGAL---DGKSPGDDAESEEE 409
Query: 244 TCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA 303
+ + RQTLVFSAT D + KL + K K S N + L + R
Sbjct: 410 SDEEDEDDEDAARQTLVFSAT--FDKDLQTKL---AGKGKSSGNDDEKMAYLMKCLKFRG 464
Query: 304 NVAIVDLTNVSVLANKLEESFIE 326
+D+ VS +A L E IE
Sbjct: 465 EPKFIDVNPVSQMAEGLREGLIE 487
>gi|46121917|ref|XP_385512.1| hypothetical protein FG05336.1 [Gibberella zeae PH-1]
Length = 783
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 174/323 (53%), Gaps = 35/323 (10%)
Query: 8 TVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPA 67
T +++G D ++E V A AW L L P ++ +I +L F +PT IQK IP
Sbjct: 196 TFGALADGNDYKDQEDVDMA-------AWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPE 248
Query: 68 AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127
G D+IG A+TGSGKTLAFG+P+++R LE ++E+G ++ P +L
Sbjct: 249 IVA-GHDVIGKAQTGSGKTLAFGIPMVERWLE--------MQEQG--VKRTGP----MSL 293
Query: 128 IITPTRELALQVTDHLKEVAKGINV--RVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 185
+++PTRELA Q+ DHLK + G+ V + GG+S KQ+R L+ + ++V+GTPGRLW
Sbjct: 294 VLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQRQLE-KADIVIGTPGRLW 352
Query: 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEG--QSEQTQ 243
E++SG + + F V+DEADR+ + G F+E + II L +G + G + +
Sbjct: 353 EVLSGDRALQSKFAKIRFLVVDEADRLFKVGQFKEAEDIIGAL---DGKSPGDDAESEEE 409
Query: 244 TCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA 303
+ + RQTLVFSAT D + KL + K K S N + L + R
Sbjct: 410 SDEEDEDDEDAARQTLVFSAT--FDKDLQTKL---AGKGKSSGNDDEKMAYLMKCLKFRG 464
Query: 304 NVAIVDLTNVSVLANKLEESFIE 326
+D+ VS +A L E IE
Sbjct: 465 EPKFIDVNPVSQMAEGLREGLIE 487
>gi|398403739|ref|XP_003853336.1| hypothetical protein MYCGRDRAFT_41129 [Zymoseptoria tritici IPO323]
gi|339473218|gb|EGP88312.1| hypothetical protein MYCGRDRAFT_41129 [Zymoseptoria tritici IPO323]
Length = 793
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 173/313 (55%), Gaps = 37/313 (11%)
Query: 19 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
AE+ S A++S AW L+L P M ++ L F +PT IQK IP G D+IG
Sbjct: 200 AEDANDSAADVS----AWRPLKLCPDTMAALAALKFSKPTAIQKFVIPEVL-AGHDVIGK 254
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 138
A TGSGKTLAFG+PI++R LE A G+ A K AP ALI++PTRELA+Q
Sbjct: 255 ASTGSGKTLAFGIPILERFLESAVGA------DGKRA-KRAP----LALILSPTRELAVQ 303
Query: 139 VTDHLKEV-AKGINVR--VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
+ HL + + G++ R + + GGMS +KQ+R LK ++VV TPGRLWE++ G
Sbjct: 304 LDQHLTSLCSSGLSRRPWIATLTGGMSIQKQQRQLKD-ADIVVATPGRLWEIIESGRGTA 362
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK 255
L + F V+DEADR++ G F+E++ I++ L + + EG E +T
Sbjct: 363 AMLKQIEFLVIDEADRLLSEGQFKEVEEILNSLDRVDDA-EGAEEGDET----------- 410
Query: 256 RQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLN-SIETLSERAGMR-ANVAIVDLTNV 313
RQTLVFSAT + +KKL G + + ++ G S+E L + R +D V
Sbjct: 411 RQTLVFSATFDRA--LQKKLV-GKVNRQSALMGSKESMEYLLGKLNFREEEPKFIDANPV 467
Query: 314 SVLANKLEESFIE 326
+ LA+ L E IE
Sbjct: 468 NQLASGLREGLIE 480
>gi|402225555|gb|EJU05616.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 752
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 182/340 (53%), Gaps = 64/340 (18%)
Query: 29 ISTEFDAW--NELRLHPL---LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
+ FD + E +L PL + +S++ LGF +PT IQ IP A QG+DIIG AETGS
Sbjct: 151 VEQSFDEYLIPEWQLFPLKNQIKRSLHGLGFTKPTEIQSRSIPIAL-QGRDIIGVAETGS 209
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKTLA+GLPI+ +LL + AG + E+ L ALI+ PTRELALQV +HL
Sbjct: 210 GKTLAYGLPIINQLLVK--YAGVIPPEQRT----------LSALILAPTRELALQVGEHL 257
Query: 144 KEVAKGIN--------------------VRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
+ V + +N + + IVGGMS KQ R+++ ++++ TPGR
Sbjct: 258 RAVVEQVNPSISKEGVKEDKKGPRGPPLISIGGIVGGMSNLKQRRIIERGMDIMIATPGR 317
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
LW+L+ + ++ + F VLDEADRMIE GHF EL +I L +T +EG +
Sbjct: 318 LWDLLGEDDSLAQQVRAIRFLVLDEADRMIETGHFEELHNI---LRLTRRDSEGDAIDDA 374
Query: 244 TCVTVSSLQR-------------KKRQTLVFSATIALSADFR---KKLKHGSLKLKQSVN 287
+ + + QR + QT VFSAT LS D + KK K G + K+ N
Sbjct: 375 SNI---AFQRAGIEVTAGGGSTSENMQTFVFSAT--LSRDLQMNLKKRKRGPPR-KKGEN 428
Query: 288 GLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
++++ L ER R I+DLT +++ L+E+ +E
Sbjct: 429 PPSTLDELLERLDFRDEQPEIIDLTPEQGVSHTLQEAKLE 468
>gi|254574120|ref|XP_002494169.1| Essential nucleolar protein, putative DEAD-box RNA helicase
[Komagataella pastoris GS115]
gi|238033968|emb|CAY71990.1| Essential nucleolar protein, putative DEAD-box RNA helicase
[Komagataella pastoris GS115]
gi|328354012|emb|CCA40409.1| similar to ATP-dependent RNA helicase [Komagataella pastoris CBS
7435]
Length = 758
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/300 (38%), Positives = 154/300 (51%), Gaps = 49/300 (16%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L P + +S+ LGF EPTPIQ IP A GKDIIG A TGSGKTLA+G+P+++
Sbjct: 198 WPE-GLSPFVRQSLSILGFNEPTPIQNEAIPLAI-SGKDIIGKAITGSGKTLAYGIPLIE 255
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR-- 153
+ L E K AP ++ PTRELA QV HLKE+AK +
Sbjct: 256 KYLTR------------ESRSKQAPPA---GIVFAPTRELAHQVVKHLKEIAKDSPLTEH 300
Query: 154 -VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
V+ + GG+S ++Q+RLL P ++V TPGR EL+ + L ++ VLDEADR+
Sbjct: 301 GVISVTGGLSIQRQQRLLDYGPGIIVATPGRFLELLESSNELATRLASVEVLVLDEADRL 360
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272
+++GHF EL+ I+ L N +QR QTLVFSAT F
Sbjct: 361 LQDGHFDELEKILSSLKKMRPHN---------------IQR--WQTLVFSAT------FS 397
Query: 273 KKL--KHGSLKLKQSVNGLNS----IETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
K+L K GS GL IE L +R R +VD V+ N++ E+ IE
Sbjct: 398 KELFGKLGSKYRWNEDQGLAEDEQIIELLGKRLRFRQKPTLVDTNPTEVVTNQVREALIE 457
>gi|407919561|gb|EKG12791.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 735
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 162/299 (54%), Gaps = 24/299 (8%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AWN L L M +I +L F PT IQ+A IP G D++G A TGSGKTLAFG+PI+
Sbjct: 198 AWNSLNLSNETMVAISKLKFGAPTRIQRAAIPEIL-SGHDVVGKAATGSGKTLAFGIPIL 256
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR- 153
+ LE + K +KGE+A ALI++PTRELA Q++ HL ++
Sbjct: 257 ESFLES--QGNKKAPKKGEKAPT--------ALILSPTRELAHQISKHLTDLYTSGTFES 306
Query: 154 --VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
V I GG+S +KQ+R L+ ++VVGTPGRLWE++S G L F V+DEADR
Sbjct: 307 PFVATITGGLSIQKQQRQLET-ADVVVGTPGRLWEVISLGHGVLKRFKRTKFLVVDEADR 365
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI--ALSA 269
++ GHF+E++ I+++L + + + E+ +RQTLVFSAT L
Sbjct: 366 LLSEGHFKEVEEILNVLGSEDEDEDAEDEEENEEREDVQDSPVQRQTLVFSATFNKGLQQ 425
Query: 270 DFRKKLK-HGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
K K HG L ++ S+E L ++ R VD+ VS +A L+E +E
Sbjct: 426 KLTGKAKWHGDL-----LSNKESMEYLLKKLNFREERPKFVDVNPVSQMAEGLKEGLVE 479
>gi|238882283|gb|EEQ45921.1| hypothetical protein CAWG_04261 [Candida albicans WO-1]
Length = 768
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/317 (34%), Positives = 176/317 (55%), Gaps = 38/317 (11%)
Query: 16 PDDAEEELVS--EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
PDD E L + E ++ + A+ + + +L FK+PTPIQK IP A GK
Sbjct: 171 PDDNEINLPNWQEGDLGSSISAYT--------LYGLSQLDFKKPTPIQKETIPIAL-SGK 221
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133
D+IG A TGSGKTLA+G+PI+++ ++ + ++++ ++ + P G +I PTR
Sbjct: 222 DVIGKATTGSGKTLAYGIPILEKYIQ----SLNLIKQNNKDKKINHPTG----IIFAPTR 273
Query: 134 ELALQVTDHLKEVAK--GINVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
ELA QV DHL ++AK ++ R +V I GG+S +KQ+RLL+ P ++V TPGR+ EL+ G
Sbjct: 274 ELAHQVVDHLNKLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVATPGRMLELVQG 333
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
+ L + VLDEADR++++GHF E + I+++ G N +S+ +
Sbjct: 334 DSELAKRLASTDIIVLDEADRLLQDGHFDEFEKILELF----GKNRPKSKSIEW------ 383
Query: 251 LQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVD 309
K QTLVFSAT + FRK +H K + ++ L+E+ + +VD
Sbjct: 384 ----KWQTLVFSATFSRDL-FRKLDRHQKGKSSSLMGNDEIVQLLNEKLKFKDKKPTLVD 438
Query: 310 LTNVSVLANKLEESFIE 326
+++ ++ E+ +E
Sbjct: 439 ANPKEIVSGQITEALVE 455
>gi|429855665|gb|ELA30611.1| ATP-dependent RNA helicase mak5 [Colletotrichum gloeosporioides
Nara gc5]
Length = 749
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 165/296 (55%), Gaps = 34/296 (11%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W +L L P ++ +I +L F +P+ IQK+ IP G D+IG A TGSGKTLAF +PI++
Sbjct: 192 WIDLGLSPAIVSAIAKLKFTKPSNIQKSSIPEIL-AGHDVIGKASTGSGKTLAFSIPIVE 250
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR-- 153
+E K + GE+ ++AP ALI++PTRELA Q+T+H+K + G+
Sbjct: 251 DWIE------KFDAKDGEKDTEHAPT----ALILSPTRELAHQITNHIKNLCAGLTNAPF 300
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
V + GG+S KQ+R L A+ ++V+GTPGRLWE++S + L + + V+DEADR++
Sbjct: 301 VCSVTGGLSVFKQQRQL-AKADIVIGTPGRLWEVISSSTELLSGFKKIRYLVVDEADRLL 359
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI--ALSADF 271
GHF+E I+D L +E + +Q T RQTLVFSAT L
Sbjct: 360 SEGHFKEAGEILDALDR-EALDEDEDKQNLT----------PRQTLVFSATFHKGLQQKL 408
Query: 272 RKKLKHGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
K K G + ++ S+E L +R R ++D+ V+ +A L+E IE
Sbjct: 409 AGKGKWGLMSEEE------SMEYLLKRLNFREEKPKLIDVNPVAQMAAGLKEGLIE 458
>gi|308498215|ref|XP_003111294.1| hypothetical protein CRE_03826 [Caenorhabditis remanei]
gi|308240842|gb|EFO84794.1| hypothetical protein CRE_03826 [Caenorhabditis remanei]
Length = 761
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 149/268 (55%), Gaps = 36/268 (13%)
Query: 48 SIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 107
S + F EPTPIQ A +P A +D++GAAETGSGKTLAFG+PI+ RLLE
Sbjct: 185 SKFLFSFSEPTPIQSAVLPVAVRDHQDVLGAAETGSGKTLAFGIPIVARLLESS------ 238
Query: 108 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE 167
E EE E P RAL+I PTREL +Q+ H+ + +++ IVGG++ KQ+
Sbjct: 239 -AENDEEEEFKGP----RALVIAPTRELVIQIMRHITALIAPTSLKATSIVGGLAQVKQD 293
Query: 168 RLL-KARPELVVGTPGRLWELMSGGEK--HLVELHTLSFFVLDEADRMIENGHFRELQSI 224
R++ + RP++VV TPGRLW +M E+ +L E L V+DE DRM+E G+F EL I
Sbjct: 294 RVISQQRPDIVVATPGRLWAMMQEAEEGDYLAEWKNLKCLVVDETDRMVEEGYFAELTHI 353
Query: 225 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQ 284
++ + E++ ++K QTLVFSAT+ + + + K +
Sbjct: 354 LNRV----------HEES---------DKEKLQTLVFSATLTFAK--AQDVAEEEKKKAK 392
Query: 285 SVNGLNSIETLSERAGMRANV-AIVDLT 311
++ I+ L + G+R N ++DLT
Sbjct: 393 ELSSQQKIQRLIKLTGLRENKHKVIDLT 420
>gi|340507841|gb|EGR33722.1| hypothetical protein IMG5_042580 [Ichthyophthirius multifiliis]
Length = 729
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 122/191 (63%), Gaps = 15/191 (7%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
+HPL+ +S+ F PT IQ + H D + A++TGSGKTL+FG+PIM +L +
Sbjct: 16 IHPLINQSLLECNFDTPTDIQAYVLSCYKHYN-DFLVASQTGSGKTLSFGIPIMSEILFD 74
Query: 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN--VRVVPIV 158
+E +E +K P+ +++ LI+ PTREL LQ+ +HL ++ K +RV IV
Sbjct: 75 KE----------DEKDK-KPQNYIKCLILAPTRELVLQIENHLNQINKHSKNLIRVGSIV 123
Query: 159 GGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH-LVELHTLSFFVLDEADRMIENGH 217
GG+S EKQ R+L P++++ TPGRLW+++ E L L+ + +FV+DEADRM+E GH
Sbjct: 124 GGISKEKQRRILSYIPDILIATPGRLWDMIENYEHDCLKRLNQIKYFVIDEADRMVELGH 183
Query: 218 FRELQSIIDML 228
F+EL +IID +
Sbjct: 184 FKELDNIIDQI 194
>gi|146412600|ref|XP_001482271.1| hypothetical protein PGUG_05291 [Meyerozyma guilliermondii ATCC
6260]
gi|152032567|sp|A5DPU0.1|MAK5_PICGU RecName: Full=ATP-dependent RNA helicase MAK5
gi|146393035|gb|EDK41193.1| hypothetical protein PGUG_05291 [Meyerozyma guilliermondii ATCC
6260]
Length = 754
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 161/304 (52%), Gaps = 37/304 (12%)
Query: 31 TEFDAWN--ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
T+ W+ + L + + GFKEPT IQ+ IP A QGKD+IG A TGSGKTLA
Sbjct: 179 TDLPKWSMENVSLSTYTINGLAGCGFKEPTAIQRKAIPLAL-QGKDVIGKATTGSGKTLA 237
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
+G+PI++R L + E ++ A+I PTRELA QV DH+ ++AK
Sbjct: 238 YGIPILERCLAQLESKTNTIKPPT-------------AMIFAPTRELAHQVVDHMNKIAK 284
Query: 149 GINVR---VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
+ +V I GG+S +KQERLL P ++V TPGR ELM + + V
Sbjct: 285 FSPLAQNGIVSITGGLSIQKQERLLSHGPSILVATPGRCLELMEKSVDLVNRMALTDMIV 344
Query: 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
LDEADR++++GHF E + I+DML N+ + ++TQ ++ QTLVFSAT
Sbjct: 345 LDEADRLLQDGHFEEFEKILDML------NKHRPKKTQGV-------SRRWQTLVFSAT- 390
Query: 266 ALSADFRKKLKHGSLKLKQS--VNGLNSIETLSERAGMRANV-AIVDLTNVSVLANKLEE 322
S D KL + + K+S + + L+ + R A++D +++ K+ E
Sbjct: 391 -FSRDLFGKLSNNKPRNKESSFIENDEILSLLNTKLQFRDRTPAVIDANPKEIVSGKVTE 449
Query: 323 SFIE 326
+ +E
Sbjct: 450 ALVE 453
>gi|367040293|ref|XP_003650527.1| hypothetical protein THITE_2110069 [Thielavia terrestris NRRL 8126]
gi|346997788|gb|AEO64191.1| hypothetical protein THITE_2110069 [Thielavia terrestris NRRL 8126]
Length = 775
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 163/297 (54%), Gaps = 31/297 (10%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W L L ++ +I RL F +PT IQ + IP + G D+IG A TGSGKTLAFG+PI++
Sbjct: 196 WVPLGLSQQMLSAIARLKFAKPTAIQASAIPEVMN-GHDVIGKAVTGSGKTLAFGIPIVE 254
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI--NVR 153
L KA ++ AEK P ALI++PTRELA Q+ DHLK++ G+ +
Sbjct: 255 SWLA---KATNGIQT----AEKKQPI----ALILSPTRELAHQIADHLKQLCAGLVTSPY 303
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+ + GG++ +KQ+R L+ + ++V+GTPGR+WE+MS L L + F V+DEADR++
Sbjct: 304 ICSVTGGLAVQKQQRQLE-KADIVIGTPGRMWEVMSTSNSVLTALRGVGFLVVDEADRLL 362
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
++GHF+E + I+ L T + + R RQTLVFSAT F K
Sbjct: 363 KDGHFKEAEEILKALDRT-----APGDDEEGSDDEDEAPRHSRQTLVFSAT------FNK 411
Query: 274 KLKHGSLKLKQSVNGLN---SIETLSERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
L+ L K N + S+E L ++ R +D VS +A L+E I+
Sbjct: 412 ALQQ-KLAGKARYNLMGEAESLEYLLKKLNFREPRPKFLDTNPVSQMAENLKEGLIQ 467
>gi|389641713|ref|XP_003718489.1| ATP-dependent RNA helicase MAK5 [Magnaporthe oryzae 70-15]
gi|374095422|sp|A4REU9.2|MAK5_MAGO7 RecName: Full=ATP-dependent RNA helicase MAK5
gi|351641042|gb|EHA48905.1| ATP-dependent RNA helicase MAK5 [Magnaporthe oryzae 70-15]
gi|440476884|gb|ELQ58053.1| ATP-dependent RNA helicase mak5 [Magnaporthe oryzae P131]
Length = 760
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 164/311 (52%), Gaps = 37/311 (11%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
+ E + + W L L +M SI +L F +PT IQ A IP G D++G A TGS
Sbjct: 177 IDETDEGADVSEWEPLGLSEEIMSSIAKLKFAKPTAIQAATIPEIL-AGHDVVGKASTGS 235
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKTLAFG+PI+++ L ++ E E P AL+++PTRELA Q+TDH+
Sbjct: 236 GKTLAFGIPIVEKWLSIN---ASTQSKRVAEGETKTPI----ALVLSPTRELAHQLTDHI 288
Query: 144 KEVAKGINVR--VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
K + G+ V + GG+S KQ+R L+ + ++VVGTPGRLWE++S K + +
Sbjct: 289 KNLCAGLATSPYVCSVTGGLSVHKQQRQLE-KADIVVGTPGRLWEVLSSSTKLIQAFRGI 347
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQR--KKRQTL 259
F V+DEADR++ GHF++ + I + L ++G + R K RQTL
Sbjct: 348 KFLVVDEADRLLSEGHFKDAKDIFEGLDKVETDDDG-------------IIRGGKARQTL 394
Query: 260 VFSATIALSADFRKKLKH---GSLKLKQSVNGLNSIETLSERAGMRANV-AIVDLTNVSV 315
VFSAT F K L+ G + + + S+E L ++ R + +D+ VS
Sbjct: 395 VFSAT------FNKGLQQKLAGKGRFDLATDS-QSMEYLLKKLKFREEIPKFIDVNPVSQ 447
Query: 316 LANKLEESFIE 326
+A L+E +E
Sbjct: 448 MAEGLKEGIVE 458
>gi|440469812|gb|ELQ38909.1| ATP-dependent RNA helicase mak5 [Magnaporthe oryzae Y34]
Length = 760
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 164/311 (52%), Gaps = 37/311 (11%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
+ E + + W L L +M SI +L F +PT IQ A IP G D++G A TGS
Sbjct: 177 IDETDEGADVSEWEPLGLSEEIMSSIAKLKFAKPTAIQAATIPEIL-AGHDVVGKASTGS 235
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKTLAFG+PI+++ L ++ E E P AL+++PTRELA Q+TDH+
Sbjct: 236 GKTLAFGIPIVEKWLSIN---ASTQSKRVAEGETKTPI----ALVLSPTRELAHQLTDHI 288
Query: 144 KEVAKGINVR--VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
K + G+ V + GG+S KQ+R L+ + ++VVGTPGRLWE++S K + +
Sbjct: 289 KNLCAGLATSPYVCSVTGGLSVHKQQRQLE-KADIVVGTPGRLWEVLSSSTKLIQAFRGI 347
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQR--KKRQTL 259
F V+DEADR++ GHF++ + I + L ++G + R K RQTL
Sbjct: 348 KFLVVDEADRLLSEGHFKDAKDIFEGLDKVETDDDG-------------IIRGGKARQTL 394
Query: 260 VFSATIALSADFRKKLKH---GSLKLKQSVNGLNSIETLSERAGMRANV-AIVDLTNVSV 315
VFSAT F K L+ G + + + S+E L ++ R + +D+ VS
Sbjct: 395 VFSAT------FNKGLQQKLAGKGRFDLATDS-QSMEYLLKKLKFREEIPKFIDVNPVSQ 447
Query: 316 LANKLEESFIE 326
+A L+E +E
Sbjct: 448 MAEGLKEGIVE 458
>gi|388579536|gb|EIM19858.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 711
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/295 (39%), Positives = 168/295 (56%), Gaps = 35/295 (11%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
L++S++ PTPIQK + A+ + KD+IG AETGSGKTLA+GLPI+ R++E
Sbjct: 152 LLRSLHENSIVTPTPIQKESLKASMIR-KDVIGIAETGSGKTLAYGLPILSRIVE----- 205
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN-----VRVVPIVG 159
GE P+ L AL++ PTRELALQV LK+ A + V V +VG
Sbjct: 206 -------GE-----IPEESLAALVLCPTRELALQVAGELKKFAPRVQDITRRVNVATVVG 253
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHF 218
GMS +KQ+R L+ +VV TPGRLWE L+ G + + F V+DEADRMIE GHF
Sbjct: 254 GMSIQKQKRQLQY-ANIVVATPGRLWEVLLDDGTLAKRAIRS-QFLVIDEADRMIEAGHF 311
Query: 219 RELQSIIDMLPMTNGSN----EGQSEQTQTCVTVSSLQRKKRQTLVFSATIA--LSADFR 272
E+ I+ M T+ S+ + + E T+ + QT+VFSAT++ L + +
Sbjct: 312 EEMDKILRMTQRTSKSSTAAFQDEFESTEIGLPEEVPATDDMQTMVFSATLSKDLQQNLK 371
Query: 273 KKLKHGSLKLKQSVNGLNSIETLSERAGMRA-NVAIVDLTNVSVLANKLEESFIE 326
+K K GS K KQ V +S++ L R R +I+DL+ V+ + + LEE+ ++
Sbjct: 372 RKRKAGSGKKKQEVK--SSLDDLLMRLDFRDLEPSIIDLSPVNKVVSTLEEARVD 424
>gi|326675871|ref|XP_003200454.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Danio rerio]
Length = 881
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 171/354 (48%), Gaps = 74/354 (20%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGK 85
EA + +W +L + +++++ LGF PT IQ +P A DI+GAAETGSGK
Sbjct: 275 EAPGPADVSSWRDLLVPEPVLRALAVLGFSAPTAIQALVLPPAIRDRLDILGAAETGSGK 334
Query: 86 TLAFGLPIMQRLLEEREKAGK---------------MLEEKGE----------------- 113
TL FG+P++ +L+ RE+ + + EE GE
Sbjct: 335 TLCFGIPMIHMILQWREQTEEHSTPERTHTPAQSLYLQEEHGEDDDDDDDDDEKKDDEVI 394
Query: 114 ----------EAEKYAPKGH------------LRALIITPTRELALQVTDHLKEVAKGIN 151
A P G L L++TPTRELA+QV H+ VA+
Sbjct: 395 DDDEGGAEGCSAPPDDPDGQNDPDPASGVCRPLLGLVLTPTRELAVQVKHHIDAVAQFTG 454
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
++ +VGGM+ +KQ R+L RPE+++ TPGRLWE++ HL +L L VLDEADR
Sbjct: 455 IKTAIVVGGMAPQKQHRVLMRRPEIIIATPGRLWEMIREKHPHLQDLRQLRCLVLDEADR 514
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
M+E GHF EL+S++++L + S+ +RQT VFSAT+ L
Sbjct: 515 MVEKGHFAELESLLELLNTSQFSS-------------------RRQTFVFSATLTLVHSL 555
Query: 272 RKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
+L+ K ++ + ++ L E+ G+R ++DLT L E+ I
Sbjct: 556 PSRLQQKK-KKQRPAEQRSKLQLLMEKVGVRDKPKVIDLTRKQATVETLTETRI 608
>gi|213406505|ref|XP_002174024.1| ATP-dependent RNA helicase mak5 [Schizosaccharomyces japonicus
yFS275]
gi|212002071|gb|EEB07731.1| ATP-dependent RNA helicase mak5 [Schizosaccharomyces japonicus
yFS275]
Length = 695
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 135/247 (54%), Gaps = 43/247 (17%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
+ + W+ + L ++ + +LGF PT IQ+ +P A G D+IG AETGSGKTLAF
Sbjct: 159 AVDVSKWSNIPLSAAILGRLSKLGFSAPTHIQELVLPVAM-AGSDVIGKAETGSGKTLAF 217
Query: 90 GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 149
G+PI++ L K ++ALI+ PTRELA Q+ +HL++
Sbjct: 218 GIPILEHCLRNINKG-------------------IQALIMAPTRELAQQIYNHLEQCNPS 258
Query: 150 INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209
++ +V + GG++ +KQ+RLL +P +V+GTPGRLW ++S + E + VLDEA
Sbjct: 259 TDIHIVTVTGGLAIQKQQRLLAKKPSIVIGTPGRLWSVIS-SQGFDEEFKNVKMLVLDEA 317
Query: 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA--L 267
DR+++ HF EL +IID+L G +QT RQT +FSAT L
Sbjct: 318 DRLLQKNHFEELHNIIDLL--------GNPKQTN------------RQTFIFSATFDAHL 357
Query: 268 SADFRKK 274
+ RKK
Sbjct: 358 QENLRKK 364
>gi|354546640|emb|CCE43372.1| hypothetical protein CPAR2_210170 [Candida parapsilosis]
Length = 800
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 167/299 (55%), Gaps = 37/299 (12%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
L P + + L F +PTPIQK IP A +GKD++G A TGSGKTLA+G+PI+++ L+
Sbjct: 186 LSPYTLNGLANLNFTKPTPIQKRTIPIAI-EGKDVVGKATTGSGKTLAYGIPILEKYLQS 244
Query: 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK--GINVR-VVPI 157
+ ++++ ++ + P G +I TPTRELA QV DHL ++A+ ++VR +V +
Sbjct: 245 LD----LVKQNVKDQKINRPNG----IIFTPTRELAHQVVDHLNKLAQYSPLSVRGIVSV 296
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
GG++ +KQ+RLLK P ++V TPGR EL + + + VLDEADR++++GH
Sbjct: 297 TGGLAIQKQQRLLKMGPGIIVATPGRFLELCENDSELMKRMSLTDIIVLDEADRLLQDGH 356
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA--LSADFRKKL 275
F E + I+++L T N+ K QTLVFSAT + L K+
Sbjct: 357 FEEFEKILELLGKTRPKNKNVDW--------------KWQTLVFSATFSRDLFGKLDKQQ 402
Query: 276 KHGSLKLKQSVNGLNS-------IETLSERAGMRANVAI-VDLTNVSVLANKLEESFIE 326
K + KQ ++G NS IE L+E+ + + +D +++ ++ E+ +E
Sbjct: 403 KPKAKNQKQQIDG-NSLVQNDEIIELLNEKLHFKDKKPVLIDANPKEIVSGQITEALVE 460
>gi|241951434|ref|XP_002418439.1| ATP-dependent RNA helicase, putative; maintenance of killer
protein, putative [Candida dubliniensis CD36]
gi|223641778|emb|CAX43740.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 758
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 175/317 (55%), Gaps = 38/317 (11%)
Query: 16 PDDAEEELVS--EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
PDD E L + E ++ + A+ + + +L FK+PTPIQK IP A GK
Sbjct: 161 PDDNEINLPNWQEGDLGSSISAYT--------LYGLSQLNFKKPTPIQKETIPIAL-SGK 211
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133
D+IG A TGSGKTLA+G+PI+++ ++ + ++++ ++ + P G +I PTR
Sbjct: 212 DVIGKATTGSGKTLAYGIPILEKYIQ----SLNLIKQNNKDNKINHPTG----IIFAPTR 263
Query: 134 ELALQVTDHLKEVAK--GINVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
ELA QV DHL +AK ++ R +V I GG+S +KQ+RLL+ P ++V TPGR+ EL+ G
Sbjct: 264 ELAHQVVDHLNSLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVATPGRMLELIQG 323
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
+ L + VLDEADR++++GHF E + I+++ G N +++ +
Sbjct: 324 DSELAKRLASTDIIVLDEADRLLQDGHFDEFEKILELF----GKNRPENKSIEW------ 373
Query: 251 LQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVD 309
K QTLVFSAT + FRK +H K + ++ L+E+ + ++D
Sbjct: 374 ----KWQTLVFSATFSRDL-FRKLDRHQKGKSSSLMGNDEIVQLLNEKLKFKDKKPTLID 428
Query: 310 LTNVSVLANKLEESFIE 326
+++ ++ E+ +E
Sbjct: 429 ANPKEIVSGQITEALVE 445
>gi|212529054|ref|XP_002144684.1| ATP dependent RNA helicase, putative [Talaromyces marneffei ATCC
18224]
gi|210074082|gb|EEA28169.1| ATP dependent RNA helicase, putative [Talaromyces marneffei ATCC
18224]
Length = 770
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 108/312 (34%), Positives = 168/312 (53%), Gaps = 35/312 (11%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW L L P L I +L F P+ IQ+A IP G D++G A TGSGKTLAFG+
Sbjct: 181 DVSAWEALGLSPALQTGISKLKFSTPSTIQQAVIPEVL-AGHDVVGKASTGSGKTLAFGI 239
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV---AK 148
PI++ L + + E K ++ ++ P ALI++PTRELA Q+ H+ +
Sbjct: 240 PILEYYLNTKGQRDTSKENKKKKKKESQPI----ALILSPTRELAHQLAKHIGALNTHTP 295
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
N R+ + GG++ +KQ+RLL ++V+GTPGR+WE++S G + + + + VLDE
Sbjct: 296 AANARIALLTGGLAIQKQQRLLN-DADIVIGTPGRVWEILSSGTGLIQRMSGVKYLVLDE 354
Query: 209 ADRMIENGHFRELQSIIDMLPMT--------NGSNEGQSEQTQTCVTVSSLQRKKRQTLV 260
ADR++ +GH++EL+ I+D L N SN + ++ + + + RQTLV
Sbjct: 355 ADRLLSDGHYKELEEILDALDRKEDNDEADENSSNSEEEDEQKAEASAA------RQTLV 408
Query: 261 FSATIALSADFRKKLKH---GSLKLKQS--VNGLNSIETLSERAGMR-ANVAIVDLTNVS 314
FSAT F K L+ G K S +N S+E L ++ R +D+ +S
Sbjct: 409 FSAT------FHKGLQQKLSGKGKFMSSDLMNKTESMEYLLQKLKFREEKPKFIDVNPIS 462
Query: 315 VLANKLEESFIE 326
+A L+E +E
Sbjct: 463 QMAQGLKEGILE 474
>gi|320592957|gb|EFX05366.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 855
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 168/308 (54%), Gaps = 24/308 (7%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW L + P L+ + RL F +P+ IQ A IP G D+IG A TGSGKTLAF +PI+
Sbjct: 187 AWVPLDIVPPLLSCLARLKFSKPSAIQAATIPEIL-AGHDVIGKASTGSGKTLAFAIPIV 245
Query: 95 QRLLEE--REKAGKMLEEKGEE-----AEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
QR L E E+ K E G++ K P AL+++PT ELA Q+T H+KE+
Sbjct: 246 QRWLAEGGAERRQKKTEADGDKDADGDTPKKRPVCRPTALVLSPTGELAHQITTHIKELC 305
Query: 148 KGINVR--VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
+ V + GG+S KQ+R L+ + ++VVGTPGRLWE++S + L ++ F V
Sbjct: 306 AALPSYPYVCAVTGGLSVFKQQRQLE-KADIVVGTPGRLWEVLSTSKPLLEAFRSIDFLV 364
Query: 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSE-----QTQTCVTVSSLQRKKRQTLV 260
+DEADR++ +GHF+E + I++ L T +EG+ + + + + + K RQTLV
Sbjct: 365 VDEADRLLSDGHFKEAEEILEALDRTE-VDEGEGKGEDEAEDENEAELETPPPKPRQTLV 423
Query: 261 FSATI--ALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLAN 318
FSAT L K ++ + KQS++ L E + +D+ VS +A
Sbjct: 424 FSATFNRGLQQKLAGKSRYDLMDQKQSMDHLMKRLNFREESPQ-----FIDVNPVSQMAE 478
Query: 319 KLEESFIE 326
+L E +E
Sbjct: 479 RLREGMVE 486
>gi|255724828|ref|XP_002547343.1| hypothetical protein CTRG_01650 [Candida tropicalis MYA-3404]
gi|240135234|gb|EER34788.1| hypothetical protein CTRG_01650 [Candida tropicalis MYA-3404]
Length = 711
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 167/289 (57%), Gaps = 36/289 (12%)
Query: 46 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 105
+ + +LGF++PTPIQK IP A QGKD+IG A TGSGKTLA+G+PI+++ ++ +
Sbjct: 129 LNGLSQLGFQKPTPIQKETIPIAL-QGKDVIGKATTGSGKTLAYGIPILEKYIQ----SL 183
Query: 106 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK--GINVR-VVPIVGGMS 162
+++ ++ + P G +I PTRELA QV +HL +AK ++ R +V I GG+S
Sbjct: 184 NTIKQNNKDKKINHPTG----IIFAPTRELAHQVVEHLNALAKYSPLSTRGIVSITGGLS 239
Query: 163 TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 222
+KQ+RLLK P ++V TPGRL EL+ G + L + VLDEADR++++GHF E +
Sbjct: 240 IQKQQRLLKHGPGIIVATPGRLLELIQGDLELCKRLASTDIIVLDEADRLLQDGHFEEFE 299
Query: 223 SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS----ADFRKKLKHG 278
I+++ G N +++ T+ K QTLVFSAT + D R+K K
Sbjct: 300 KILELF----GKNRPRNKSTEW----------KWQTLVFSATFSRDLFGKLDKRQKGKTS 345
Query: 279 SLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
SL V ++ L+++ + A+VD +++ ++ E+ +E
Sbjct: 346 SLMHNDEV-----VKLLNDKLKFKDKKPAMVDANPKEIVSGQITEALVE 389
>gi|336262101|ref|XP_003345836.1| hypothetical protein SMAC_07120 [Sordaria macrospora k-hell]
gi|380088610|emb|CCC13496.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 807
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 160/310 (51%), Gaps = 37/310 (11%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W L L P ++ SI +L F +PT IQ IP G D+IG A TGSGKTLAFG+P+++
Sbjct: 210 WVPLDLSPRMISSIAKLKFTKPTLIQAQAIPQI-MAGHDVIGKASTGSGKTLAFGIPLVE 268
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV--R 153
L E + KGE K ALI++PTRELA Q+ DHL+ + KG+
Sbjct: 269 AWLSAEETRK---QNKGE-------KNGATALILSPTRELAQQIRDHLQALCKGLPTAPY 318
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+ ++GGM+ +KQ+R L A ++V+ TPGR+WE+MS L L +SF VLDEADR++
Sbjct: 319 ICSVLGGMAVQKQKRQL-AVADIVIATPGRMWEVMSSDNSVLAALRNISFLVLDEADRLL 377
Query: 214 ENGHFRELQSIIDMLP--MTNGSNEGQS----------------EQTQTCVTVSSLQRKK 255
++G F+E + I L +NE Q E+ + K
Sbjct: 378 KDGSFKEAEEIFKALDRQAVEENNEDQKMGNTDEEGQEQEEEQSEEEEEEEEEEEEPVNK 437
Query: 256 RQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSV 315
RQTLVFSAT + + ++KL G + K + +E L ++ R VD V
Sbjct: 438 RQTLVFSAT--FNKNLQQKL-AGKSRFKAT--STQDMEYLLQKLNFRETPKFVDANPVHQ 492
Query: 316 LANKLEESFI 325
+A L+E I
Sbjct: 493 MAENLKEGLI 502
>gi|260949921|ref|XP_002619257.1| hypothetical protein CLUG_00416 [Clavispora lusitaniae ATCC 42720]
gi|238846829|gb|EEQ36293.1| hypothetical protein CLUG_00416 [Clavispora lusitaniae ATCC 42720]
Length = 801
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 138/242 (57%), Gaps = 32/242 (13%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W + L + + LGFK+PTPIQK+ IP A +GKD+IG A TGSGKTLA+G+PI++
Sbjct: 215 WQNVPLSAYTLSGLQALGFKQPTPIQKSAIPLAL-EGKDVIGKATTGSGKTLAYGIPILE 273
Query: 96 RLLEEREKAGKMLEEKGEEAEKY--APKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153
+ + K+ E K +K AP G +I PTRELA QV+DHL ++AK +
Sbjct: 274 KYI------SKIAEIKTLRQKKTIPAPTG----IIFAPTRELAHQVSDHLNKIAKYAPLA 323
Query: 154 ---VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210
+V + GG+S ++QERLL P ++V TPGR EL+ E+ + VLDEAD
Sbjct: 324 SNGIVSVTGGLSIQRQERLLSYGPGIIVATPGRFLELIEKSEEFTKRMALTEIIVLDEAD 383
Query: 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
R++++GHF E + I+D+L G N ++ + QTLVFSAT +
Sbjct: 384 RLLQDGHFEEFERILDLL----GKNRDKAYGW------------RWQTLVFSATFSRDLF 427
Query: 271 FR 272
F+
Sbjct: 428 FK 429
>gi|164658650|ref|XP_001730450.1| hypothetical protein MGL_2246 [Malassezia globosa CBS 7966]
gi|159104346|gb|EDP43236.1| hypothetical protein MGL_2246 [Malassezia globosa CBS 7966]
Length = 502
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 158/303 (52%), Gaps = 41/303 (13%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA----AHQGKDIIGAAETGSGKTLAFGL 91
W LHP L ++ LGF +PT +Q A + + + +D++G A+TGSGKTLA+ L
Sbjct: 201 WASYALHPQLKMALKSLGFHKPTDVQAATLRPSLGLESSMPRDVVGIAQTGSGKTLAYAL 260
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV--AKG 149
PI+ +LE A + L ALI+TPTRELALQV H++ V A G
Sbjct: 261 PILHYVLEH-------------SAHTEDTQRDLEALILTPTRELALQVCTHIRAVVDAAG 307
Query: 150 INVRVVPIVGGMSTEKQERLLKAR--PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 207
V + GGMS +KQER+L+ ++V TPGRLW+L+ + + + F V+D
Sbjct: 308 RFANVATVCGGMSVQKQERMLQQHGGAHVIVATPGRLWDLLKQDDALALRVRRTRFLVID 367
Query: 208 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267
EADRMIE GHF E+ SI+ M+ T G+ S++ QT V+SAT +
Sbjct: 368 EADRMIETGHFAEMDSILSMVRRTKGA---------VADANSAM-----QTFVYSAT--M 411
Query: 268 SADFRKKLKHGSLKLKQ---SVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEES 323
+ + LK + KQ + + N+++ L R R +++LT +A+ L E+
Sbjct: 412 TKTLQANLKRAPWRKKQRTAASSNNNTLDDLLARIDFRDPEPVVIELTPQRHVADTLYEA 471
Query: 324 FIE 326
IE
Sbjct: 472 KIE 474
>gi|341883047|gb|EGT38982.1| hypothetical protein CAEBREN_08481 [Caenorhabditis brenneri]
Length = 736
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 138/242 (57%), Gaps = 36/242 (14%)
Query: 31 TEFDAWNELRLHPL-LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
T+ AW +L P +++++ R+GF +PT IQ A +P A D++GAAETGSGKTLAF
Sbjct: 148 TDISAWEKLFFLPTEILQAVERMGFSQPTEIQSAVLPIAVRDRMDVLGAAETGSGKTLAF 207
Query: 90 GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 149
G+P++ RLL++ + + P RALII PTREL +Q+ H+ + +
Sbjct: 208 GIPLVSRLLDDISSG---------DQKSSGP----RALIIAPTRELVIQIMRHINALIET 254
Query: 150 INVRVVPIVGGMSTEKQERLL-KARPELVVGTPGRLWELMSGGEK--HLVELHTLSFFVL 206
++ IVGG++ KQ+R++ + RP+++V TPGRLW ++ + +L E L V+
Sbjct: 255 TPLKATSIVGGLAQVKQDRVISQQRPDILVATPGRLWAMIQEANEGDYLAEWRNLKCLVV 314
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
DE DRM+E G+F EL I++ + + C R+K QTLVFSAT+
Sbjct: 315 DETDRMVEEGYFAELTHILNKV-------------HEEC------DREKLQTLVFSATLT 355
Query: 267 LS 268
+
Sbjct: 356 FA 357
>gi|32564046|ref|NP_871838.1| Protein F55F8.2, isoform b [Caenorhabditis elegans]
gi|351063670|emb|CCD71884.1| Protein F55F8.2, isoform b [Caenorhabditis elegans]
Length = 579
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 148/267 (55%), Gaps = 34/267 (12%)
Query: 49 IYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108
I+ F EPT IQ A +PAA +D++GAAETGSGKTLAFG+P++ RLLE + +
Sbjct: 3 IFFFRFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLESSDDS---- 58
Query: 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER 168
++ E E P RALI+ PTREL +Q+ H+ + + IVGG++ KQER
Sbjct: 59 -QETESTEVRGP----RALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQER 113
Query: 169 LL-KARPELVVGTPGRLWELMSGGE--KHLVELHTLSFFVLDEADRMIENGHFRELQSII 225
++ + RP++VV TPGRLW +M E + L E L V+DE DRM+E G+F EL I+
Sbjct: 114 IISQQRPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHIL 173
Query: 226 DMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQS 285
+ + +SE ++K QTLVFSAT+ + + + K +
Sbjct: 174 NKI-------HEESE------------KEKLQTLVFSATLTFAK--AQDVAEEEKKKAKE 212
Query: 286 VNGLNSIETLSERAGMRANV-AIVDLT 311
++ I+ L + G+R N ++DLT
Sbjct: 213 LSSQQKIQRLIKLTGLRENKHKVIDLT 239
>gi|291001145|ref|XP_002683139.1| predicted protein [Naegleria gruberi]
gi|284096768|gb|EFC50395.1| predicted protein [Naegleria gruberi]
Length = 460
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 126/202 (62%), Gaps = 12/202 (5%)
Query: 49 IYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL--LEEREKAGK 106
+YRLGF +PTPIQ+ IP A Q DI+ AAETGSGKTLAF LPI+ L L+E E A +
Sbjct: 1 LYRLGFYKPTPIQEESIPKAIGQQADILAAAETGSGKTLAFVLPIIDELMKLKENEPAQQ 60
Query: 107 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ 166
+ ++ E LR+LI+ PTRELALQV H++ V + +++VV +VGG++ EKQ
Sbjct: 61 V-----KDDESRTDMFQLRSLILLPTRELALQVCSHIEAVIRNTSLKVVGLVGGLNEEKQ 115
Query: 167 ERLLKA-RPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 225
R + +P+++V TPGR W + G + L F V+DEADRM+ + HF ELQSI+
Sbjct: 116 IREIHVQKPDIIVATPGRYWFYIDKGMFASNSILGLRFLVIDEADRMVADAHFFELQSIL 175
Query: 226 DMLPM----TNGSNEGQSEQTQ 243
+ + N N+ + EQ +
Sbjct: 176 RYITIERFKRNYINQKEEEQVE 197
>gi|380478434|emb|CCF43606.1| DEAD/DEAH box helicase [Colletotrichum higginsianum]
Length = 779
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 164/308 (53%), Gaps = 28/308 (9%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
V EAE + W +L L P + +I +L F +PT IQ + IP G D+IG A TGS
Sbjct: 204 VEEAEEDLDMTPWVDLGLSPATVSAIAKLKFAKPTKIQASTIPEIL-AGHDVIGKASTGS 262
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKTLAF +PI++ L++ EEK + + ALI++PTRELA Q+T+H+
Sbjct: 263 GKTLAFSIPIVEDWLDK-------YEEKADGGKPEKADNTPLALILSPTRELAHQITNHI 315
Query: 144 KEVAKG-INVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
K + G +N V + GG+S KQ+R L A+ ++V+GTPGRLWE++SG + L +
Sbjct: 316 KNLCAGLVNAPFVCSVTGGLSVFKQQRQL-AKADIVIGTPGRLWEVISGSRELLAGFRQI 374
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
+ V+DEADR++ GHF+E I+D L + E+ SL RQTLVF
Sbjct: 375 RYLVVDEADRLLSEGHFKEAGEILDAL------DREVIEEDDDDDDEKSLS--ARQTLVF 426
Query: 262 SATI--ALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLAN 318
SAT L K K G + ++ S+E L ++ R +D+ +A+
Sbjct: 427 SATFHQGLQQKLAGKGKWGLMSEEE------SMEYLLKKLNFREEKPKFIDVNPAKQMAS 480
Query: 319 KLEESFIE 326
L+E IE
Sbjct: 481 GLKEGLIE 488
>gi|167533855|ref|XP_001748606.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772847|gb|EDQ86493.1| predicted protein [Monosiga brevicollis MX1]
Length = 698
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 153/254 (60%), Gaps = 19/254 (7%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W+E L+P ++K+I +LGF+ PTPIQ+A IP + +DIIG AETGSGKTLAF LP++
Sbjct: 274 SWDEAGLNPEMLKAIQKLGFENPTPIQRAAIPIGLN-NRDIIGVAETGSGKTLAFVLPLL 332
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
++ +++ E+ + YA +I+ PTR+LA Q+ D + A+ + VR+
Sbjct: 333 NWIIS----LPQLVREQDIDNGPYA-------VILAPTRDLAQQIEDEANKFARPLGVRL 381
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V ++GG S E Q L E+V+ TPGRL +++ + H + L+ S+ V+DEADRM++
Sbjct: 382 VSVIGGHSREDQSFKLNQGCEVVIATPGRLIDVL---DNHYMVLNQCSYIVMDEADRMLD 438
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATIALSADFRK 273
G E+Q I++ +P++N + + Q + +S + K RQT++F+AT+ S +
Sbjct: 439 MGFEPEVQRILEYIPVSNMKPDTDEAEDQHLLAENSRNKAKYRQTVLFTATMPTSVE--- 495
Query: 274 KLKHGSLKLKQSVN 287
+L L+ +VN
Sbjct: 496 RLARTYLRRPATVN 509
>gi|448512603|ref|XP_003866769.1| Mak5 nucleolar DEAD-box RNA helicase [Candida orthopsilosis Co
90-125]
gi|380351107|emb|CCG21330.1| Mak5 nucleolar DEAD-box RNA helicase [Candida orthopsilosis Co
90-125]
Length = 800
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 167/308 (54%), Gaps = 41/308 (13%)
Query: 36 WNE----LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
W+E + L P + + L F PTPIQK IP A +GKD++G A TGSGKTLA+G+
Sbjct: 177 WSERELGVSLSPYTLNGLAILNFTTPTPIQKRTIPIAL-EGKDVVGKATTGSGKTLAYGI 235
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK--G 149
PI+++ L+ ++ + ++EK H +I TPTRELA QV DHL ++A+
Sbjct: 236 PILEKYLQSLDQVKQNVKEKK--------INHPNGVIFTPTRELAHQVVDHLNKLAQYSP 287
Query: 150 INVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
++V+ +V + GG++ +KQ+RLLK P ++V TPGR EL + + VLDE
Sbjct: 288 LSVKGIVSVTGGLAIQKQQRLLKMGPGIIVATPGRFLELCENDPELAKRMSLTDIVVLDE 347
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-- 266
ADR++++GHF E + I+++ G N +++ K QTLVFSAT +
Sbjct: 348 ADRLLQDGHFEEFEKILELF----GKNRPKNKNIAW----------KWQTLVFSATFSRD 393
Query: 267 LSADFRKKLKHGSLKLKQSVNGLNS-------IETLSERAGMRANVAI-VDLTNVSVLAN 318
L K+ K KQ ++G NS IE L+E+ + I +D +++
Sbjct: 394 LFGKLDKQQKPKIKNQKQQIDG-NSLVQNDEIIELLNEKLNFKDKKPILIDANPKEIVSG 452
Query: 319 KLEESFIE 326
++ E+ +E
Sbjct: 453 QITEALVE 460
>gi|443896134|dbj|GAC73478.1| RNA helicase [Pseudozyma antarctica T-34]
Length = 886
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 116/348 (33%), Positives = 169/348 (48%), Gaps = 59/348 (16%)
Query: 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA-------------------AHQ 71
+ AW+ L LH L +++ GF PT IQ IP A A +
Sbjct: 224 SSLPAWSHLPLHAALKRALAHKGFHSPTEIQNRSIPLALGLQQDDSSDSDEPSTSSSAFK 283
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131
+D++G ++TGSGKTLA+GLPI+ L E + + P G ALI+ P
Sbjct: 284 KRDVVGVSQTGSGKTLAYGLPILNYLFHNAEN----VASAPTHGDVPPPLG---ALILCP 336
Query: 132 TRELALQVTDHLKEVAKGINV--------------RVVPIVGGMSTEKQERLLKARP--- 174
TRELALQV+ HL +V + + ++ + GGMS KQ RLL+ R
Sbjct: 337 TRELALQVSAHLTDVIRSSCLVDDTLSYAKLVRRPQIAVVCGGMSEHKQRRLLQGRSRRA 396
Query: 175 --ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 232
+++V TPGRLWE+ ++ + + F VLDEADRM++ GHF E++ I++++
Sbjct: 397 GVDIIVATPGRLWEMTRLDDELAARIKQVRFLVLDEADRMVQVGHFAEMEHILNLVHRAE 456
Query: 233 GS--NEGQSEQTQT------CVTVSSLQRKKR--QTLVFSATI--ALSADF--RKKLKHG 278
EGQ Q V V R QT VFSAT+ AL + R+KL
Sbjct: 457 AQRPKEGQDGQQSDSDGESGAVVVGEGVRPNAAMQTFVFSATLSKALQTNLKRRRKLPQF 516
Query: 279 SLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
+ K + +++E L ER R++ AIVDLT L + L E+ +E
Sbjct: 517 TKKRHSKRSAGSTLEELLERIDFRSSPAIVDLTPAQGLPSGLMETKLE 564
>gi|402081834|gb|EJT76979.1| ATP-dependent RNA helicase MAK5 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 760
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 160/295 (54%), Gaps = 31/295 (10%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W L L ++ SI RL F +PT IQ IP G D+IG A TGSGKTLAFG+PI++
Sbjct: 196 WVPLDLSGEMLSSIARLKFSKPTAIQAQAIPEIL-AGHDVIGKASTGSGKTLAFGIPIVE 254
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV--R 153
R + + A E+G++ AL+++PTRELA Q+T+H K + G+
Sbjct: 255 RWISLSQTAASKSPEEGKKP---------IALVLSPTRELAHQITNHFKALCGGLATAPY 305
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+ + GG+S KQ+R L+ + ++V+ TPGRLWE++S ++ + + + V+DEADR++
Sbjct: 306 ICSVTGGLSVHKQQRQLE-KADIVIATPGRLWEVLSSSKQTVAAFRHIKYLVVDEADRLL 364
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
+GHF++ + I+ L ++ +T + RQTLVFSAT + ++
Sbjct: 365 SDGHFKDAEEIMRAL-----------DRIETTEDRDNQGPPPRQTLVFSAT--FNKGLQQ 411
Query: 274 KLK-HGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
KL G L N S+E L +R R +D+ VS +A +L+E +E
Sbjct: 412 KLAGKGRFDLN---NDALSMEYLLKRLKFREEKPKFIDVNPVSQMAARLKEGLVE 463
>gi|346327471|gb|EGX97067.1| ATP dependent RNA helicase, putative [Cordyceps militaris CM01]
Length = 852
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 160/301 (53%), Gaps = 17/301 (5%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W L L P ++ +I +LGF PT IQ IP + G D+IG A+TGSGKTLAFG+PI++
Sbjct: 232 WVALNLSPAIVSAIGKLGFTSPTAIQAESIPPI-NAGADVIGKAQTGSGKTLAFGIPIVE 290
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLR----ALIITPTRELALQVTDHLKEVAKGI- 150
R LE +E G+E E R A+I++PTRELA Q+ DHL+ + G+
Sbjct: 291 RWLELHADKDGTDDEDGDEEEAEQDGASSRKGPTAVILSPTRELAKQIGDHLRALCAGLP 350
Query: 151 --NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT-LSFFVLD 207
+ RV + GG+S KQ+R L+ ++VVGTPGRLWE++ G + L F V+D
Sbjct: 351 AASPRVCVVTGGLSVHKQQRQLRT-ADVVVGTPGRLWEVLDGDAALQAAFRSRLRFLVVD 409
Query: 208 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267
EADR+ + G F+E + II L G +E E+ + V RQTLVFSAT
Sbjct: 410 EADRLFKVGQFKEAELIIGALDRRAGGSESDDEEDEEEVDEGDEGSWSRQTLVFSAT--F 467
Query: 268 SADFRKKLKHGSLKLKQSVNGLN--SIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
D + KL + K + S G + + L R +D+ VS +A L E I
Sbjct: 468 DKDLQMKL---AGKKRPSAQGTDEEKMADLMRCLKFRGQPTFIDVNPVSQMAEGLREGLI 524
Query: 326 E 326
E
Sbjct: 525 E 525
>gi|149248082|ref|XP_001528428.1| hypothetical protein LELG_00948 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152032565|sp|A5DUB2.1|MAK5_LODEL RecName: Full=ATP-dependent RNA helicase MAK5
gi|146448382|gb|EDK42770.1| hypothetical protein LELG_00948 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 855
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/316 (33%), Positives = 163/316 (51%), Gaps = 51/316 (16%)
Query: 36 WNELR----LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
W E + L P ++ + + F PTPIQK IP A +GKD+IG A TGSGKTLA+G+
Sbjct: 217 WGEDKIETCLSPYILNGLSNMKFTTPTPIQKRTIPLAL-EGKDVIGKATTGSGKTLAYGI 275
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA---- 147
PI+++ ++ + + + EK H +I PTRELA QV DHL ++A
Sbjct: 276 PILEKYIQSLDTVKRKVREK--------VVNHPTGIIFAPTRELAHQVVDHLNKIAQYSP 327
Query: 148 ---KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204
KGI V + GG+S +KQERLL P ++V TPGR+ EL ++ + L
Sbjct: 328 LSTKGI----VSVTGGLSIQKQERLLSFGPGIIVATPGRMLELCQNDQELVKRLSMTDII 383
Query: 205 VLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
VLDEADR++++GHF E + I+++ N+ E K QTLVFSAT
Sbjct: 384 VLDEADRLLQDGHFEEFEKILELFNKNRPKNDKSIEW-------------KWQTLVFSAT 430
Query: 265 IA--LSADFRKKLKHGSLKLK-QSVNGLNS----------IETLSERAGMRANV-AIVDL 310
+ L K+ K S+K +++N +S IE L E+ + ++VD
Sbjct: 431 FSRDLFGKLDKQQKQKSVKGNGKALNKADSGNSLVQNDEIIELLREKLRFKDKAPSLVDA 490
Query: 311 TNVSVLANKLEESFIE 326
+++ ++ E+ +E
Sbjct: 491 NPKEIVSGQITEALVE 506
>gi|367013592|ref|XP_003681296.1| hypothetical protein TDEL_0D05010 [Torulaspora delbrueckii]
gi|359748956|emb|CCE92085.1| hypothetical protein TDEL_0D05010 [Torulaspora delbrueckii]
Length = 750
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 168/307 (54%), Gaps = 48/307 (15%)
Query: 32 EFDAWNEL-RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
EF WN+L +L ++ + +LGF +PT IQ IP A +G+DI+G A TGSGKTLA+G
Sbjct: 171 EFPEWNKLGKLSVTTLQGLTKLGFSKPTDIQAKAIPEAM-KGEDIMGKAATGSGKTLAYG 229
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150
+PI++++L ++++ + ALI TPTRELA QVT HL+++ + I
Sbjct: 230 IPILEKMLNNKDQSKAI------------------ALIFTPTRELAQQVTKHLQQIGELI 271
Query: 151 NVR----VVPIVGGMSTEKQERLLK--ARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204
+ ++ + GG+S +KQERLLK +VV TPGR EL+ E + +
Sbjct: 272 LKKSPYAIMSLTGGLSIQKQERLLKYDGSARVVVATPGRFLELIEKNESLVKRFAKIDTL 331
Query: 205 VLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
VLDEADR++++GHF E + I+ L G S + S+ +++ QT++FSAT
Sbjct: 332 VLDEADRLLQDGHFDEFEKILKYL--------GNSRK-------STDKKEGWQTMIFSAT 376
Query: 265 IALSADFRKKLKHGSL-KLKQSVNGLNSIET----LSERAGMRANVAIVDLTNVSVLANK 319
A+ D KL S K K+ + +E L + ++ I+D + ++++
Sbjct: 377 FAM--DLFNKLSTTSWSKFKKGKENASEMEIVLQHLMTKIHFKSKPVIIDTDSEQRVSSR 434
Query: 320 LEESFIE 326
++ES IE
Sbjct: 435 IKESLIE 441
>gi|19112899|ref|NP_596107.1| ATP-dependent RNA helicase Mak5 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74582436|sp|O74393.1|MAK5_SCHPO RecName: Full=ATP-dependent RNA helicase mak5
gi|3560140|emb|CAA20727.1| ATP-dependent RNA helicase Mak5 (predicted) [Schizosaccharomyces
pombe]
Length = 648
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 153/299 (51%), Gaps = 49/299 (16%)
Query: 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
+ AW L P ++ S+ + GF +P PIQ IP A+ G DIIG A+TGSGKTLAFG
Sbjct: 119 VDVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEAS-IGFDIIGKADTGSGKTLAFG 177
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150
+PI++ L + +++AL++ PTRELA Q+ H + +
Sbjct: 178 IPILEHCLRNVDAK------------------YVQALVVAPTRELAHQICQHFELIKPSP 219
Query: 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV-ELHTLSFFVLDEA 209
N+RV+ I GG++ +KQ+RLL P +VV TPGRLW +++ E +L + VLDEA
Sbjct: 220 NIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVIN--ENNLTGNFKKIKCLVLDEA 277
Query: 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI--AL 267
DR+++ HF EL ++++L G TQ RQT +FSAT L
Sbjct: 278 DRLLQKSHFEELSKLLEIL--------GNPMHTQ------------RQTFIFSATFDEGL 317
Query: 268 SADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
+K +K G++ K + + +E + + +D S +A+++ E IE
Sbjct: 318 QQRLKKNMK-GNITEKYN----SPMENMLKEVRFFGKPKFLDANPQSAVASRVLEGLIE 371
>gi|344303044|gb|EGW33318.1| hypothetical protein SPAPADRAFT_50211 [Spathaspora passalidarum
NRRL Y-27907]
Length = 781
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 179/334 (53%), Gaps = 44/334 (13%)
Query: 12 VSNGPDDAEEELVSEA-----------EIS-TEFDAWNELRLHPLLMKSIYRLGFKEPTP 59
+ PD+ E+EL + A EI E+ + + L P + + L F +PTP
Sbjct: 153 IDEKPDELEKELSANAFANLDLPLPDDEIDLPEWQSEDLSSLSPYTLNGLSVLNFSKPTP 212
Query: 60 IQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 119
IQK IP A +GKD+IG A TGSGKTLA+G+PI+++ L + +++K
Sbjct: 213 IQKKAIPLAL-EGKDVIGKATTGSGKTLAYGIPILEKYLSSLSTIKQNVKDKIVNN---- 267
Query: 120 PKGHLRALIITPTRELALQVTDHLKEVAK--GINVR-VVPIVGGMSTEKQERLLKARPEL 176
P G ++ PTRELA QV HL E+AK ++ R +V I GG+S +KQERLL P +
Sbjct: 268 PTG----IVFAPTRELAHQVVSHLNELAKYSPLSTRGIVSITGGLSIQKQERLLAHGPGI 323
Query: 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNE 236
+V TPGR EL+ E+ + + VLDEADR++++GHF E + I+++ + N+
Sbjct: 324 IVATPGRFLELLQNDEQLTKRMASTDILVLDEADRLLQDGHFEEFEKILELFGKSRPKNK 383
Query: 237 GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL-KHGSLKLK-QSVNGLNSIET 294
S+Q K QTLVFSAT S D KL KH K K S+ + I T
Sbjct: 384 -------------SMQW-KWQTLVFSAT--FSRDLFGKLDKHQKNKAKGNSLMDNDEIVT 427
Query: 295 -LSERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
L+E+ + + A++D +++ ++ E+ +E
Sbjct: 428 LLNEKLKFKDSKPALIDANPKEIVSGQITEALVE 461
>gi|307104921|gb|EFN53172.1| hypothetical protein CHLNCDRAFT_25981 [Chlorella variabilis]
Length = 459
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/202 (45%), Positives = 122/202 (60%), Gaps = 23/202 (11%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
LRALI+ PTRELALQV +HL+ V KG + VVPIVGG+S KQERLL PE+VV TPGR
Sbjct: 4 LRALILAPTRELALQVCEHLQAVGKGCGIWVVPIVGGISALKQERLLAKHPEVVVATPGR 63
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
L +LM G HL L LSF V+DEADRM++ GH+ EL SI+ +P
Sbjct: 64 LLDLMRAGHAHLTHLSRLSFLVIDEADRMVQQGHYGELSSILGAIPRRQ----------- 112
Query: 244 TCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA 303
Q+ + QT VFSAT+ L A R++L+ G S + +++L ++ R
Sbjct: 113 --------QQARLQTFVFSATLTLPASLRRRLRKGGGGASGSSD----LDSLMDKIPFRG 160
Query: 304 NVAIVDLTNVSVLANKLEESFI 325
IVDLT+ LA+K+EE+++
Sbjct: 161 KPKIVDLTSQRRLADKVEEAYL 182
>gi|323507773|emb|CBQ67644.1| related to MAK5-ATP-dependent RNA helicase [Sporisorium reilianum
SRZ2]
Length = 946
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 117/368 (31%), Positives = 172/368 (46%), Gaps = 76/368 (20%)
Query: 32 EFD-----AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA------------------ 68
EFD AW+ L LH L +++ GFK+PT IQ IP A
Sbjct: 235 EFDHKLLPAWSHLPLHAALKRALAHKGFKKPTEIQNRSIPLALGLQQEAASSDDSDDAAA 294
Query: 69 ------AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122
+ + +D++G ++TGSGKTLA+GLPI+ L E E A + P G
Sbjct: 295 ANSSSSSRRKRDVVGVSQTGSGKTLAYGLPILNYLFENAENAIASFSRPSTTDDVPPPLG 354
Query: 123 HLRALIITPTRELALQVTDHLKEVAKGINV--------------------RVVPIVGGMS 162
ALI+ PTRELALQV+ HL E+ + + ++ + GGMS
Sbjct: 355 ---ALILCPTRELALQVSSHLTEIVRASCLVSSTTGDEDEISHKKLLRRPQIAVVCGGMS 411
Query: 163 TEKQERLLKARP---------ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+KQ RLL R +++V TPGRLWE+ + + F VLDEADRM+
Sbjct: 412 EQKQRRLLDGRSRQGDRKAGVDIIVATPGRLWEMTRLDDNLAARIKQTRFLVLDEADRMV 471
Query: 214 ENGHFRELQSIIDMLPMTNG--SNEG------QSEQTQTCVTVSSLQ-RKKRQTLVFSAT 264
E GHF E++ I++++ + G +EG Q + ++ V ++ QT VFSAT
Sbjct: 472 EVGHFAEMEHILNLVNRSEGRRPSEGKDGQLPQDDDDESEVETHGVKPSANMQTFVFSAT 531
Query: 265 I--ALSADFRKKLKHGSLKLKQSVNGLNSIETLSE---RAGMRANV-AIVDLTNVSVLAN 318
+ AL + +++ K K+ + TL E R R + A++DLT L
Sbjct: 532 LSKALQINLKRRRKQKQFTKKRHSKRKENATTLDELMDRVDFRDDSPAVIDLTPGQGLPE 591
Query: 319 KLEESFIE 326
L E+ IE
Sbjct: 592 GLMETKIE 599
>gi|444320517|ref|XP_004180915.1| hypothetical protein TBLA_0E03420 [Tetrapisispora blattae CBS 6284]
gi|387513958|emb|CCH61396.1| hypothetical protein TBLA_0E03420 [Tetrapisispora blattae CBS 6284]
Length = 742
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 111/312 (35%), Positives = 165/312 (52%), Gaps = 49/312 (15%)
Query: 29 ISTEFDAW-NE---LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
I +E W NE L H L +++ RLGF++PT IQK IP +G DI+G A TGSG
Sbjct: 168 IPSELPHWCNEIPDLSFHTL--ETLSRLGFQKPTEIQKKSIPIVM-KGTDILGKASTGSG 224
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KTLA+G+PI++++L K G++ E G +I TPTRELA QV HL
Sbjct: 225 KTLAYGIPIIEKILSNL-KEGQLNETSG--------------IIFTPTRELAQQVGRHLN 269
Query: 145 EVAKGINVR---VVPIVGGMSTEKQERLL---KARPELVVGTPGRLWELMSGGEKHLVEL 198
E G + ++ I GG+S +KQER+L K +++V TPGR E++ EK+L
Sbjct: 270 EFVWGDHFNSSSIITITGGLSLQKQERILGYGKGAGQIIVSTPGRFLEIIEKDEKYLERF 329
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 258
+ VLDEADR+I++GHF E + I+ +L SN+ + + Q QT
Sbjct: 330 SKIDILVLDEADRLIQDGHFEEFERILKLL-----SNKRRELKEQGYW----------QT 374
Query: 259 LVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIE----TLSERAGMRANVAIVDLTNVS 314
LV+SAT +L +KL G+ K+ +N ++ L E+ R +VD+
Sbjct: 375 LVYSATFSLG--LFEKLDKGNKWNKKKLNQEEELDEVVNKLMEKIHFRQKPLVVDIDPFE 432
Query: 315 VLANKLEESFIE 326
+ ++ E+ IE
Sbjct: 433 QMNKQIHETLIE 444
>gi|167385322|ref|XP_001737297.1| ATP-dependent RNA helicase mak5 [Entamoeba dispar SAW760]
gi|165899942|gb|EDR26421.1| ATP-dependent RNA helicase mak5, putative [Entamoeba dispar SAW760]
Length = 586
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 158/294 (53%), Gaps = 53/294 (18%)
Query: 32 EFDAWNEL-RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
E W +L +L +++++Y LGF PT IQ+ I A KD++G+A TGSGKTL+F
Sbjct: 45 EMKKWMKLYKLDLRIIRALYDLGFINPTEIQQLSIKKALKFHKDVVGSAPTGSGKTLSFL 104
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150
+PI+QRL+E +K + + +II PTRELA+Q+ +H K++ K +
Sbjct: 105 IPIVQRLIE---------LDKIDSTQ---------CVIIVPTRELAVQINEHFKKLIKYL 146
Query: 151 -NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE-LHTLSFFVLDE 208
IVGGM+ KQ RLL P +V+GTPGRL+EL S E ++++ L + F VLDE
Sbjct: 147 PQFTSSVIVGGMAIPKQVRLLSQEPTIVIGTPGRLYELYSETEHNVLQTLPEIPFIVLDE 206
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++E GHF EL ++D+ K++QT VFSAT+ L+
Sbjct: 207 ADRLLEKGHFIELTKLLDV-----------------------FNNKEKQTFVFSATMILA 243
Query: 269 ADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEE 322
++ K K S NG + + + ++ M + ++D++ ++EE
Sbjct: 244 SEMMAK--------KYSSNGEDELTRMLQKLKMN-DTELIDVSTPQQTVEQMEE 288
>gi|358395256|gb|EHK44643.1| hypothetical protein TRIATDRAFT_172944, partial [Trichoderma
atroviride IMI 206040]
Length = 785
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 156/293 (53%), Gaps = 25/293 (8%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W EL L ++ +I +LGF +PT IQ+ IP G+D+IG A+TGSGKTLAFG+PI++
Sbjct: 223 WVELNLSTRILSAIAKLGFAKPTLIQEKTIPEILA-GEDVIGKAQTGSGKTLAFGIPIVE 281
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV--R 153
+ LE L E+ ++ P A++++PTRELA Q++DH+K + G+
Sbjct: 282 KWLE--------LYEERRNVKREGPT----AVVLSPTRELAKQLSDHIKALCDGLPTAPY 329
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
V + GG+S KQ+R L+ + ++V+ TPGRLWE++ G + F V+DEADR+
Sbjct: 330 VCTVTGGLSIHKQQRQLE-KADIVIATPGRLWEVLDGDMSLQNSFTKIKFLVVDEADRLF 388
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
+ G F+E + II L + + + RQTLVFSAT + +
Sbjct: 389 KAGQFKEAEDIIGAL---------DRKDPDAEDDDDNEELPPRQTLVFSATFDKNLQSKL 439
Query: 274 KLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
++ + K + +E L + R+ +D+ S +A+ L+E IE
Sbjct: 440 AVRGKAPKAGAGSSDEEKMEYLMKSLKFRSEPKFIDVNPASQMASGLKEGLIE 492
>gi|358389222|gb|EHK26814.1| hypothetical protein TRIVIDRAFT_175608 [Trichoderma virens Gv29-8]
Length = 770
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 155/296 (52%), Gaps = 31/296 (10%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW EL L + +I +LGF +PT IQ+ IP G D+IG A+TGSGKTLAFG+PI+
Sbjct: 204 AWVELNLSTRTVSAIAKLGFSKPTLIQQKTIPEIL-AGDDVIGKAQTGSGKTLAFGIPIV 262
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV-- 152
++ LE L ++ P A++++PTRELA Q++DH+K + G+
Sbjct: 263 EKWLE--------LYVDKTNVKREGPT----AVVLSPTRELAKQISDHIKALCDGLPTAP 310
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
V + GG+S KQ+R L+ + ++V+ TPGRLWE++ G + F V+DEADR+
Sbjct: 311 YVCTVTGGLSIHKQQRQLE-KADIVIATPGRLWEVLDGDMSLQDSFTKIKFLVVDEADRL 369
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272
+ G F+E + II L + + RQTLVFSAT + +
Sbjct: 370 FKAGQFKEAEDIIGAL----------DRRDPEADDEDDDELPPRQTLVFSAT--FDKNLQ 417
Query: 273 KKLKHGSLKLKQSVNGLN--SIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
KL G K ++ G + +E L + R +D+ VS +A+ L+E IE
Sbjct: 418 SKLA-GRGKGSKAAAGSDEEKMEYLMKCLKFRGQPKFIDVNPVSQMADGLKEGLIE 472
>gi|407041314|gb|EKE40660.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 600
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 158/294 (53%), Gaps = 53/294 (18%)
Query: 32 EFDAWNEL-RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
E W +L +L +++++Y LGF PT IQ+ I A KDI+G+A TGSGKTL+F
Sbjct: 59 EMKKWMKLYKLDLRIIRALYDLGFINPTEIQQLSIKKALKFHKDIVGSAPTGSGKTLSFL 118
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150
+PI+QRL+E +K + + +II PTRELA+Q+ +H K++ K +
Sbjct: 119 IPIVQRLIE---------LDKTDSTQ---------CVIIVPTRELAVQINEHFKKLIKYL 160
Query: 151 -NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE-LHTLSFFVLDE 208
+ IVGGM+ KQ RLL P +V+GTPGRL+EL S E ++++ L + F VLDE
Sbjct: 161 PQFTSLVIVGGMAIPKQVRLLSQEPTIVIGTPGRLYELYSETEHNVLQTLPEIPFIVLDE 220
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++E GHF + ++D+ K++QT VFSAT+ L+
Sbjct: 221 ADRLLEKGHFVDFTKLLDI-----------------------FNNKEKQTFVFSATMILA 257
Query: 269 ADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEE 322
++ K K S NG + + + ++ + + ++D++ ++EE
Sbjct: 258 SEMMAK--------KYSSNGEDELTRMLQKLKLN-DAELIDVSTPQQTVEQMEE 302
>gi|390352859|ref|XP_784112.3| PREDICTED: ATP-dependent RNA helicase DDX24-like
[Strongylocentrotus purpuratus]
Length = 934
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 121/204 (59%), Gaps = 26/204 (12%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
L L++TPTRELA+QV +HL AK N++V +VGGMS EKQ+R+LK RP+++VGTPGR
Sbjct: 458 LFGLVLTPTRELAVQVKNHLVAAAKKTNIKVAVVVGGMSAEKQKRVLKKRPDIIVGTPGR 517
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
LWEL GE HL L + ++DEADRM+E GH+ EL I+D+L
Sbjct: 518 LWELYQLGEPHLASLPDVKCLIIDEADRMVEKGHYAELSEILDILN-------------- 563
Query: 244 TCVTVSSLQRKKRQTLVFSATIALS--ADFRKKLKHGSLKLKQSVNGLNSIETLSERAGM 301
+S QR RQT VFSAT++L RK LK + K+ + ++++ + G+
Sbjct: 564 -----TSEQRSSRQTFVFSATLSLIHLGPLRKSLKKAYKQDKK-----DKLDSVMAKIGI 613
Query: 302 RANVAIVDLTNVSVLANKLEESFI 325
+ + +VDLT A+ L ES I
Sbjct: 614 KEDAEVVDLTKREGTASSLLESKI 637
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 63/86 (73%), Gaps = 4/86 (4%)
Query: 14 NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
+G D A E++ SE +ST W+ L + ++ +S+ +GF PTPIQ CIPAA ++GK
Sbjct: 232 SGEDTAGEKISSEVSMST----WDTLSIPTVVHESLQTMGFASPTPIQAGCIPAAINEGK 287
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLE 99
DI+GAAETGSGKTLAFG+P++ R+L+
Sbjct: 288 DIVGAAETGSGKTLAFGIPLIYRILQ 313
>gi|45190633|ref|NP_984887.1| AER027Wp [Ashbya gossypii ATCC 10895]
gi|74693626|sp|Q757I6.1|MAK5_ASHGO RecName: Full=ATP-dependent RNA helicase MAK5
gi|44983612|gb|AAS52711.1| AER027Wp [Ashbya gossypii ATCC 10895]
gi|374108110|gb|AEY97017.1| FAER027Wp [Ashbya gossypii FDAG1]
Length = 752
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 163/318 (51%), Gaps = 55/318 (17%)
Query: 24 VSEAEISTEFDAW-NELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
+ EAE + E +W N ++L +++ + RLGF PT IQ IP A G DI+G A TG
Sbjct: 170 LDEAE-APELPSWTNTMKLSATVLQGLSRLGFSNPTEIQLQSIPKAL-DGHDIMGKASTG 227
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142
SGKTLA+G+PI++ ++ + + P G LI TPTRELA QVTDH
Sbjct: 228 SGKTLAYGIPILEGIIRDDTDS--------------RPIG----LIFTPTRELAHQVTDH 269
Query: 143 LKEVAKGINVR----VVPIVGGMSTEKQERLLKAR--PELVVGTPGRLWELMSGGEKHLV 196
L+EV + R ++ + GG+S +KQERLLK + +VV TPGR EL+ + +
Sbjct: 270 LREVGALLVKRNPYSIMCLTGGLSIQKQERLLKYKGSARVVVATPGRFLELLEKDQTLID 329
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLP----MTNGSNEGQSEQTQTCVTVSSLQ 252
+ VLDEADR++++GHF E + I+ L TNG G
Sbjct: 330 RFAKVDTLVLDEADRLLQDGHFEEFERILKHLSRARKFTNGKKHGW-------------- 375
Query: 253 RKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIET----LSERAGMRANVAIV 308
+T+++SAT +L D+ KL + S K + N +E L + R I+
Sbjct: 376 ----KTMIYSATFSL--DYFNKLSNTSWKKMKKAPSENEMEEVLKHLMTKIPFRGKPLII 429
Query: 309 DLTNVSVLANKLEESFIE 326
D +A++++ES IE
Sbjct: 430 DTNPEQKVASQIKESLIE 447
>gi|400598353|gb|EJP66070.1| ATP-dependent RNA helicase MAK5 [Beauveria bassiana ARSEF 2860]
Length = 799
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 165/335 (49%), Gaps = 28/335 (8%)
Query: 3 HTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQK 62
HTN V++ +N D + + W L L P + +I +LGF PT IQ+
Sbjct: 167 HTNPFGVLMNANDEYD---------DSGLDLKKWVALNLSPATVSAIGKLGFASPTEIQE 217
Query: 63 ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122
IP G D+IG A+TGSGKTLAFG+PI++R LE + + E + E ++ KG
Sbjct: 218 QTIPHITG-GADVIGKAQTGSGKTLAFGIPIVERWLELHQSTDEEDEAEAEAKKER--KG 274
Query: 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIV----GGMSTEKQERLLKARPELVV 178
+ A+I++PTRELA Q+ DH+K + G+ P V GG+S +KQ+R L A+ ++V+
Sbjct: 275 PI-AVILSPTRELAKQIGDHIKALCDGLPTAAAPYVCVVTGGLSIQKQQRQL-AKADIVI 332
Query: 179 GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQ 238
GTPGRLWE++ G K E + F V+DEADR+ + G F+E + II L + E
Sbjct: 333 GTPGRLWEVLDGNMKLQDEFCRIQFLVVDEADRLFKAGQFKEAELIIGALDRRDPEAEDD 392
Query: 239 SEQTQTCVTVSSLQRKK-----RQTLVFSATI--ALSADFRKKLKHGSLKLKQSVNGLNS 291
S + RQTLVFSAT L K + + Q
Sbjct: 393 SSDDEDFSEEEDEDADARHPPPRQTLVFSATFDKGLQTKLAGKTRPSA---SQGATDEEK 449
Query: 292 IETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
+ L + R +D V +A L E IE
Sbjct: 450 MAYLMQCLKFRGQPKFIDANPVEQMAEGLREGLIE 484
>gi|67463088|ref|XP_648201.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56464242|gb|EAL42815.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 600
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 158/294 (53%), Gaps = 53/294 (18%)
Query: 32 EFDAWNEL-RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
E W +L +L +++++Y LGF PT IQ+ I A KDI+G+A TGSGKTL+F
Sbjct: 59 EMKKWMKLYKLDLRIIRALYDLGFINPTEIQQLSIKKALKFHKDIVGSAPTGSGKTLSFL 118
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150
+PI+QRL+E +K + + +II PTRELA+Q+ +H K++ K +
Sbjct: 119 IPIVQRLIE---------LDKTDSTQ---------CVIIVPTRELAVQINEHFKKLIKYL 160
Query: 151 -NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE-LHTLSFFVLDE 208
+ IVGGM+ KQ RLL P +V+GTPGR++EL S E ++++ L + F VLDE
Sbjct: 161 PQFTSLVIVGGMAIPKQVRLLSQEPTIVIGTPGRIYELYSETEHNVLQTLPEIPFIVLDE 220
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++E GHF + ++D+ K++QT VFSAT+ L+
Sbjct: 221 ADRLLEKGHFVDFTKLLDI-----------------------FNNKEKQTFVFSATMILA 257
Query: 269 ADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEE 322
++ K K S NG + + + ++ + + ++D++ ++EE
Sbjct: 258 SEMMAK--------KYSSNGEDELTRMLQKLKLN-DAELIDISTPQQTVEQMEE 302
>gi|71003417|ref|XP_756389.1| hypothetical protein UM00242.1 [Ustilago maydis 521]
gi|46095767|gb|EAK81000.1| hypothetical protein UM00242.1 [Ustilago maydis 521]
Length = 957
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 119/386 (30%), Positives = 182/386 (47%), Gaps = 81/386 (20%)
Query: 18 DAEEELVSEAEISTEF-DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA-------- 68
D +++ EAE + AW+ L LH L +++ GFK+PT IQ+ IP A
Sbjct: 224 DLQDDEADEAEFDDKLLPAWSHLALHSDLKRALLHKGFKQPTEIQRKAIPFALGLQQEAT 283
Query: 69 ------------------AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110
+ +D++G ++TGSGKTLA+GLPI+ L E E A
Sbjct: 284 SSDDSEDTADSAAIGAPSTRRKRDVVGVSQTGSGKTLAYGLPILNYLFENAENAIASSCR 343
Query: 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG------INV------------ 152
+ + P G ALI+ PTRELALQV+ HL ++ + I+V
Sbjct: 344 RNAVDDLPPPLG---ALILCPTRELALQVSSHLIDLVRASCIVSDIDVDQPEISHRKLLR 400
Query: 153 --RVVPIVGGMSTEKQERLLKARP---------ELVVGTPGRLWELMSGGEKHLVELHTL 201
++ + GGMS +KQ RLL+ R +++V TPGRLWE+ + +
Sbjct: 401 RPQIAVVCGGMSEQKQRRLLEGRSRQGDRKAGVDIIVATPGRLWEMTRLDDHLAARIKQT 460
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR----- 256
F VLDEADRM+E GHF E++ I++++ + + + Q V+ S + +
Sbjct: 461 RFLVLDEADRMVEVGHFAEMEHILNLVNRSEAKRPSEGQDGQQHVSGSDKEDESEVEIPT 520
Query: 257 ---------QTLVFSATI--ALSADF--RKKLKHGSLKL--KQSVNGLNSIETLSERAGM 301
QT +FSAT+ AL + R+KLK + K K+ N +++ L +R
Sbjct: 521 HGVKPSSSMQTFIFSATLSKALQVNLKRRRKLKQFAKKRHSKRKENA-TTLDELMDRIDF 579
Query: 302 RANV-AIVDLTNVSVLANKLEESFIE 326
R A++DLT L L E+ IE
Sbjct: 580 RDQAPAVIDLTPAQGLPQGLMETKIE 605
>gi|449705204|gb|EMD45301.1| ATP-dependent RNA helicase mak5, putative [Entamoeba histolytica
KU27]
Length = 600
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 158/294 (53%), Gaps = 53/294 (18%)
Query: 32 EFDAWNEL-RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
E W +L +L +++++Y LGF PT IQ+ I A KDI+G+A TGSGKTL+F
Sbjct: 59 EMKKWMKLYKLDLRIIRALYDLGFINPTEIQQLSIKKALKFHKDIVGSAPTGSGKTLSFL 118
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150
+PI+QRL+E +K + + +II PTRELA+Q+ +H K++ K +
Sbjct: 119 IPIVQRLIE---------LDKTDSTQ---------CVIIVPTRELAVQINEHFKKLIKYL 160
Query: 151 -NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE-LHTLSFFVLDE 208
+ IVGGM+ KQ RLL P +V+GTPGR++EL S E ++++ L + F VLDE
Sbjct: 161 PQFTSLVIVGGMAIPKQVRLLSQEPTIVIGTPGRIYELYSETEHNVLQTLPEIPFIVLDE 220
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++E GHF + ++D+ K++QT VFSAT+ L+
Sbjct: 221 ADRLLEKGHFVDFTKLLDI-----------------------FNNKEKQTFVFSATMILA 257
Query: 269 ADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEE 322
++ K K S NG + + + ++ + + ++D++ ++EE
Sbjct: 258 SEMMAK--------KYSSNGEDELTRMLQKLKLN-DAELIDISTPQQTVEQIEE 302
>gi|357459393|ref|XP_003599977.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355489025|gb|AES70228.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 828
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 134/239 (56%), Gaps = 48/239 (20%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
D++ +L L L+++ LG+ +PTPIQ ACIP A G+DI G+A TGSGKT AF LP
Sbjct: 151 DSFLQLNLSRPLLRACEVLGYSKPTPIQAACIPLAL-TGRDICGSAITGSGKTAAFALPT 209
Query: 94 MQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELALQVTDHLKEVAKGIN 151
++RLL + PK +R LI+TPTRELA QV +K +++ +
Sbjct: 210 LERLL-------------------FRPKRVHAIRVLILTPTRELAAQVQSMIKSLSQFTD 250
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+R IVGG+ST++QE L++RP++VV TPGR+ + + V+L LS +LDEADR
Sbjct: 251 IRCCLIVGGLSTKEQEVALRSRPDIVVATPGRMIDHLRNS--MSVDLDDLSVLILDEADR 308
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
++E G E+Q ++ + P KKRQT++FSAT+ D
Sbjct: 309 LLELGFSAEIQELVRVCP------------------------KKRQTMLFSATMTEEVD 343
>gi|150951560|ref|XP_001387897.2| ATP-dependent RNA helicase [Scheffersomyces stipitis CBS 6054]
gi|284018096|sp|A3GG51.2|MAK5_PICST RecName: Full=ATP-dependent RNA helicase MAK5
gi|149388695|gb|EAZ63874.2| ATP-dependent RNA helicase [Scheffersomyces stipitis CBS 6054]
Length = 836
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 159/321 (49%), Gaps = 41/321 (12%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
PDD + L + F L P + + LGF +PTPIQK IP AA +GKD+
Sbjct: 210 PDDEDINLPHWQNEDSNF------SLSPYTLHGLSVLGFDKPTPIQKKTIPLAA-EGKDV 262
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135
+G A TGSGKTLA+G+PI+++ L + ++K H +I PTREL
Sbjct: 263 VGKAITGSGKTLAYGIPILEKYLSNLSIINQNRQKK--------IINHPTGIIFAPTREL 314
Query: 136 ALQVTDHLKEVAKGINVR---VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192
A QV HL +AK + +V I GG+S +KQERLL P ++V TPGR+ EL+ E
Sbjct: 315 AHQVVSHLNSLAKYSPLSTNGIVSITGGLSIQKQERLLSHGPGIIVATPGRILELLQKDE 374
Query: 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQ 252
L + VLDEADR++++GHF E ++I+D+ N+
Sbjct: 375 DLTKRLASTDIIVLDEADRLLQDGHFEEFETILDLFRKNRPKNKTFPW------------ 422
Query: 253 RKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSI------ETLSERAGMR-ANV 305
K QTLVFSAT S D KL K++ G + I L+++ +
Sbjct: 423 --KWQTLVFSAT--FSRDLFGKLDKNQKSHKRNSEGSSLIGNDEILNLLNDKLKFKDTRP 478
Query: 306 AIVDLTNVSVLANKLEESFIE 326
A+VD +++ + E+ +E
Sbjct: 479 ALVDANPKEIVSGNITEALVE 499
>gi|224014332|ref|XP_002296829.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968684|gb|EED87030.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 884
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 122/187 (65%), Gaps = 6/187 (3%)
Query: 50 YRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL--LEEREKAGKM 107
+ L + PTPIQ + +PAA +D++GAA TGSGKTL++GLPI+Q + L++ E A +
Sbjct: 207 HSLNYSYPTPIQASTLPAAILGRRDVVGAAPTGSGKTLSYGLPILQWVLGLDDAEIAA-L 265
Query: 108 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE 167
EE +A + K L+ALI+ PTRELA+QVT L + V + IVGG + KQ+
Sbjct: 266 DEEDSADAGEPKQKRPLQALILVPTRELAIQVTSELA-IVSCHKVPIGTIVGGFAEVKQK 324
Query: 168 RLL-KARPELVVGTPGRLWELMSGGE-KHLVELHTLSFFVLDEADRMIENGHFRELQSII 225
R+L + RP ++V TPGRLWELMS E HL ++ L F V+DEADRMI+ G F +L+ I
Sbjct: 325 RVLERKRPGVLVATPGRLWELMSSNEYSHLNDMSQLRFLVIDEADRMIKQGSFPQLKQIF 384
Query: 226 DMLPMTN 232
+++ N
Sbjct: 385 EVINQAN 391
>gi|344232121|gb|EGV64000.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 809
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 126/234 (53%), Gaps = 27/234 (11%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+ L L + + L F PTPIQK IP +G+DIIG A TGSGKTLA+G+PI++
Sbjct: 169 WSSLSLSGYALTGLNELKFTSPTPIQKKSIPLGL-EGRDIIGKATTGSGKTLAYGIPILE 227
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR-- 153
+ L E ++ + +P G ++ PTRELA QV DHL ++K +
Sbjct: 228 KYLSNLE----TIKANRKNGIINSPTG----IVFVPTRELAHQVVDHLNNISKFYPLPPN 279
Query: 154 -VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+V I GG+S +KQERLLK P L+V TPGR EL E+ L + VLDEADR+
Sbjct: 280 GIVSITGGLSIQKQERLLKFGPGLIVATPGRFLELSEKDEELLKRWSSTDIVVLDEADRL 339
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
+++GHF E + I+++ N L K QTLVFSAT A
Sbjct: 340 LQDGHFDEFEKILELFKKHRPGN---------------LATWKWQTLVFSATFA 378
>gi|302817632|ref|XP_002990491.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
gi|300141659|gb|EFJ08368.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
Length = 469
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 144/301 (47%), Gaps = 57/301 (18%)
Query: 7 GTVVVVSNGPDDAEEELVSEAEISTEFDA---------WNELRLHPLLMKSIYRLGFKEP 57
G V + PDD EI E DA + EL + L+ + LG + P
Sbjct: 20 GDPVPAAERPDDGNAR---STEICKESDAPEGGGGGGSFEELGVAEWLVGACKELGMRHP 76
Query: 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK 117
TP+Q+AC+P +GKD++G A+TGSGKT AF LPI+QRL E
Sbjct: 77 TPVQRACVPQIL-KGKDVLGMAQTGSGKTAAFALPILQRLGEN----------------- 118
Query: 118 YAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELV 177
P G + AL++TPTRELA Q++D K + G+++R +VGGM Q ++L RP +V
Sbjct: 119 --PYG-IFALVMTPTRELAFQISDQFKALGAGVHLRCAVVVGGMDMTTQAQILMERPHVV 175
Query: 178 VGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEG 237
+ TPGR+ + F VLDEAD +++ G ELQ+I D +
Sbjct: 176 IATPGRIKAHIGSDPDIAAAFSKTKFLVLDEADLLLDRGFQDELQTIFDGI--------- 226
Query: 238 QSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSE 297
K+RQTL+FSAT+ + L Q+ GL ++E+L +
Sbjct: 227 ---------------SKQRQTLLFSATMTGDLQALRDLFGHRAFFYQAYEGLKTVESLDQ 271
Query: 298 R 298
R
Sbjct: 272 R 272
>gi|340514381|gb|EGR44644.1| predicted protein [Trichoderma reesei QM6a]
Length = 734
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 156/295 (52%), Gaps = 30/295 (10%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W EL L ++ +I +LGF +PT IQ+ IP G+D+IG A+TGSGKTLAFG+PI++
Sbjct: 172 WVELNLSTRVVSAIAKLGFSKPTLIQQKTIPEIL-AGEDVIGKAQTGSGKTLAFGIPIVE 230
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV--R 153
+ LE L A++ P A++++PTRELA Q++DH+K + G+
Sbjct: 231 KWLE--------LYVDKANAKREGPT----AVVLSPTRELAKQLSDHIKALCDGLPTAPY 278
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
V + GG+S +KQ+R L+ + ++V+ TPGRLWE++ G + F V+DEADR+
Sbjct: 279 VCTVTGGLSIQKQQRQLE-KADIVIATPGRLWEVLDGDMSLQDSFTKIKFLVVDEADRLF 337
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
+ G F+E + II L + RQTLVFSAT + +
Sbjct: 338 KAGQFKEAEDIIGAL---------DRRDPEADEDDEGDDLPPRQTLVFSAT--FDKNLQS 386
Query: 274 KLKHGSLKLKQSVNGLN--SIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
KL G K ++ G + +E L + R +D+ VS +A L+E IE
Sbjct: 387 KL-AGRGKGPKAAAGSDEEKMEYLMKCLKFRGEPKYIDVNPVSQMAEGLKEGLIE 440
>gi|294658482|ref|XP_460822.2| DEHA2F10538p [Debaryomyces hansenii CBS767]
gi|218511820|sp|Q6BLU9.2|PRP28_DEBHA RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
gi|202953164|emb|CAG89165.2| DEHA2F10538p [Debaryomyces hansenii CBS767]
Length = 580
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 136/241 (56%), Gaps = 19/241 (7%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGK 85
+I W E +L L+ + + LG+ PTPIQ+A IP A + G+DI+G AETGSGK
Sbjct: 147 GDIENPLRCWAESKLPAKLLNILIKNLGYDSPTPIQRASIPLALN-GRDIVGIAETGSGK 205
Query: 86 TLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 145
TLAF LP+ +L + +L E +E+ P G LI+ PTRELALQ+T K
Sbjct: 206 TLAFLLPLFSYILSV--DSNYLLYEHQQESNFNKPLG----LILAPTRELALQITKEAKL 259
Query: 146 VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
+N+ VV I+GG E+ ++ +VV TPGRL + + E+ ++ L FF
Sbjct: 260 FGDKLNLNVVTIIGGHQYEETVHSVRNGVHIVVATPGRLIDSL---ERGIINLSNCYFFT 316
Query: 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+DEAD+MI+ G + LQSI++ LP SE+ +T + KKR TL+F+ATI
Sbjct: 317 MDEADKMIDMGFEKSLQSILNYLPA--------SEKLETTIDGKIFNIKKRITLMFTATI 368
Query: 266 A 266
+
Sbjct: 369 S 369
>gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
Length = 491
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 132/233 (56%), Gaps = 48/233 (20%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
++ + EL L +MK++ +GF+EP+PIQK IP A QGKD+IG A+TG+GKT AFG+P
Sbjct: 2 YETFKELGLSEEIMKAVADMGFEEPSPIQKEAIPIAM-QGKDLIGQAQTGTGKTAAFGIP 60
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
I+QR+ + K P+ A++++PTRELA+Q + + +A+ +N+
Sbjct: 61 ILQRI----------------DTSKPGPQ----AIVLSPTRELAIQSAEEINHLAQYMNI 100
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ +PI GG E+Q R LK +P ++V TPGRL + M ++ ++L + VLDE D M
Sbjct: 101 KTIPIYGGQDIERQFRALKKKPNIIVATPGRLMDHM---KRKTIDLSNVQIAVLDEGDEM 157
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ G ++++I+ P K+RQTL FSAT+
Sbjct: 158 VDMGFIDDIRTIMAATP------------------------KERQTLFFSATM 186
>gi|401841362|gb|EJT43764.1| MAK5-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 435
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 159/303 (52%), Gaps = 40/303 (13%)
Query: 36 WNELR-LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
W L L +++S+ L F PT IQK IPA +GKD++G A TGSGKTLA+G+PI+
Sbjct: 152 WTNLSSLSMTILQSLQNLNFLRPTEIQKKSIPAIL-EGKDVLGKASTGSGKTLAYGIPIV 210
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI---- 150
++L+ + K P +LI TPTRELA QVTDHL+++ + +
Sbjct: 211 EQLITNFSQKNK------------KP----ISLIFTPTRELAHQVTDHLRKICEPVLAKS 254
Query: 151 NVRVVPIVGGMSTEKQERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
++ + GG+S +KQ+RLLK ++V+ TPGR EL+ + + ++ +LDE
Sbjct: 255 QYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNELIKRFSQVNTLILDE 314
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++++GHF E + II L + E+ + V S K QTLVFSAT S
Sbjct: 315 ADRLLQDGHFDEFEKIIKYLSV---------ERRKNKVKDSENDNKIWQTLVFSAT--FS 363
Query: 269 ADFRKKLKHG----SLKLKQSVNGLNS-IETLSERAGMRANVAIVDLTNVSVLANKLEES 323
D KL K K + + LN+ IE L + + I+ S + + ++ES
Sbjct: 364 IDLFDKLSSSHQAKDRKFKNNEDELNAVIEHLMNKIQFNSKPVIIHTNPGSKVGSHIKES 423
Query: 324 FIE 326
IE
Sbjct: 424 LIE 426
>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
Length = 522
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 136/254 (53%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+K++ R GF+E TPIQ IP A G+D+IG A+TG+GKT AFGLP+++
Sbjct: 3 FKELELSPELLKAVERSGFEEATPIQSETIPLAL-SGRDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ HL+ L+I+PTRELA+Q + L + K VRV+
Sbjct: 62 KI--------------------DTSSSHLQGLVISPTRELAIQTQEELYRLGKDKKVRVM 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRQLKDRPHIVVGTPGRMLDHIN---RHTLKLETVETLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI-----ALSAD 270
G +++SII +P T RQTL+FSAT+ ++
Sbjct: 159 GFLEDIESIISKVPST------------------------RQTLLFSATMPPAIKSIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F + +H +K K+
Sbjct: 195 FMQNPEHVKIKAKE 208
>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
Length = 760
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 141/255 (55%), Gaps = 48/255 (18%)
Query: 13 SNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
++GP D + S S +++ EL L L+++ LG+++PTPIQ ACIP A G
Sbjct: 164 TSGPVDPSKFFASSEGASFHANSFLELNLSRPLVRACEALGYQKPTPIQAACIPLAL-TG 222
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIIT 130
+DI G+A TGSGKT AF LP+++RLL + PK +R LI+T
Sbjct: 223 RDICGSAITGSGKTAAFSLPVLERLL-------------------FRPKRVPAIRVLILT 263
Query: 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
PTRELA QV ++++A+ ++R IVGG+ST+ QE L++ P++VV TPGR+ + +
Sbjct: 264 PTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRN 323
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
V L L+ +LDEADR++E G E+Q +I M P
Sbjct: 324 SLS--VGLEDLAVVILDEADRLLELGFSAEIQELIRMCP--------------------- 360
Query: 251 LQRKKRQTLVFSATI 265
K+RQT++FSAT+
Sbjct: 361 ---KRRQTMLFSATM 372
>gi|156848503|ref|XP_001647133.1| hypothetical protein Kpol_1036p17 [Vanderwaltozyma polyspora DSM
70294]
gi|160409987|sp|A7TEG8.1|MAK5_VANPO RecName: Full=ATP-dependent RNA helicase MAK5
gi|156117817|gb|EDO19275.1| hypothetical protein Kpol_1036p17 [Vanderwaltozyma polyspora DSM
70294]
Length = 763
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 161/293 (54%), Gaps = 51/293 (17%)
Query: 46 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 105
+ + +LGF +PT IQ+ IP A +G+DI+G A TGSGKTLA+G+PI+++L++ +
Sbjct: 204 LHGLTKLGFNKPTLIQEEAIPMAL-KGEDIMGKASTGSGKTLAYGIPIIEKLMKSKSNT- 261
Query: 106 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR----VVPIVGGM 161
AP G LI TPTRELA QVTDHL+++A I + ++ + GG+
Sbjct: 262 -------------APIG----LIFTPTRELAKQVTDHLRKIASLIVDKSPHAILSLTGGL 304
Query: 162 STEKQERLLK--ARPELVVGTPGRLWELMSGGEKHLVE-LHTLSFFVLDEADRMIENGHF 218
S +KQERLLK +VV TPGR EL+ +K LVE +S VLDEADR++++GHF
Sbjct: 305 SIQKQERLLKYEGSGRIVVATPGRFLELIEK-DKTLVERFSQISTLVLDEADRLLQDGHF 363
Query: 219 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 278
E ++I+ L G+ + ++ QT++FSAT A D KL H
Sbjct: 364 DEFENILKYL--------GRESKN---------RKHNWQTMIFSATFA--TDLFDKLSHA 404
Query: 279 SLK-LKQSVNGLNSIET----LSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
S K +K N +E L + ++ ++D ++++++ES IE
Sbjct: 405 SWKNMKTPSKNENEMEIVLKHLMTKIHFKSKPILIDANPEDKVSSQIKESLIE 457
>gi|149642575|ref|NP_001092515.1| ATP-dependent RNA helicase DDX24 [Bos taurus]
gi|148878167|gb|AAI46185.1| DDX24 protein [Bos taurus]
gi|296475209|tpg|DAA17324.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Bos taurus]
Length = 852
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 124/226 (54%), Gaps = 23/226 (10%)
Query: 100 EREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 159
+ E+AGK+ +E G PK L L++TPTRELA+QV H+ VAK +++ +VG
Sbjct: 361 DEEQAGKLKQELG--GSTVPPKRPLLGLVLTPTRELAVQVKQHVDAVAKFTSIKTAILVG 418
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR 219
GMST+KQ+R+L +PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GHF
Sbjct: 419 GMSTQKQQRMLNRQPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFA 478
Query: 220 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279
EL +++ML S KRQTLVFSAT+ L ++ H
Sbjct: 479 ELSQLLEML-------------------SDSQYNPKRQTLVFSATLTLVHQAPARILHK- 518
Query: 280 LKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 519 -KHAKKMDKTAKLDLLMQKIGMRGKPKVIDLTRKEATVETLTETKI 563
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 189 DVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 248
Query: 92 PIMQRLL 98
P++ +L
Sbjct: 249 PMIDAVL 255
>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 518
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 148/252 (58%), Gaps = 51/252 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL+L PLL+K++ + G+ +P+PIQ+ IP + G+D++G A+TG+GKT AF LPI+Q
Sbjct: 3 FDELQLSPLLLKALDQKGYIKPSPIQEQAIPYVLN-GQDLLGCAQTGTGKTAAFALPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L+E + + +K P +RALI+TPTRELALQ+ ++++E G +
Sbjct: 62 NLME-----------RPKNRQKKKP---VRALILTPTRELALQIHENIEEYGAGTPINSA 107
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S + Q + L+ +++V TPGRL +L+ +H ++L + FVLDEADRM++
Sbjct: 108 VIFGGVSAKPQIQSLRRGIDILVATPGRLLDLIG---QHEIDLSFVEIFVLDEADRMLDM 164
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI-----ALSAD 270
G +++ +I +LP KKRQTL+FSAT+ AL+A
Sbjct: 165 GFIHDVKRVITLLP------------------------KKRQTLLFSATMPDEIQALAA- 199
Query: 271 FRKKLKHGSLKL 282
KL H +K+
Sbjct: 200 ---KLLHNPVKV 208
>gi|169618601|ref|XP_001802714.1| hypothetical protein SNOG_12492 [Phaeosphaeria nodorum SN15]
gi|118574276|sp|Q0U6X2.1|MAK5_PHANO RecName: Full=ATP-dependent RNA helicase MAK5
gi|111059185|gb|EAT80305.1| hypothetical protein SNOG_12492 [Phaeosphaeria nodorum SN15]
Length = 817
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 161/298 (54%), Gaps = 31/298 (10%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW EL L +++S+ +L F +PT IQ + IP G+D+IG A TGSGKTLAFG+PI+
Sbjct: 250 AWEELELSTKILESLAKLKFSKPTTIQASTIPEIM-AGRDVIGKASTGSGKTLAFGIPII 308
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV-AKGI--N 151
+ L + K ++ + P ALII PTRELA Q+T HL + AKG
Sbjct: 309 ESYL--------ASKSKSKDVKDKTP----LALIIAPTRELAHQITAHLTALCAKGAFEA 356
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+ + GG++ +KQ R L+ + +++VGTPGRLWE++S G L ++ + F V+DEADR
Sbjct: 357 PLIASVTGGLAVQKQRRQLE-KADIIVGTPGRLWEVISTGHGLLEKVKQIRFLVVDEADR 415
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI--ALSA 269
++ G+++EL I+ +L + + +RQTLVFSAT L
Sbjct: 416 LLSQGNYKELGEILKILE--------KDAPAEGEAEAEETTEVERQTLVFSATFQKGLQQ 467
Query: 270 DFRKKLKHGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
K K GS L ++ S+E L ++ R +D S +A+KL+E IE
Sbjct: 468 KLAGKAKGGSDNL---MSKQQSMEYLLKKINFREEKPKFIDANPSSQMASKLKEGLIE 522
>gi|62088344|dbj|BAD92619.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 variant [Homo sapiens]
Length = 676
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 368 DKEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 426
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 427 LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 486
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 487 HFAELSQLLEML------NDSQY-------------NPKRQTLVFSATLTLVHQAPARIL 527
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 528 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 574
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 196 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 255
Query: 92 PIMQRLLEEREK 103
P++ +L+ +++
Sbjct: 256 PMIHAVLQWQKR 267
>gi|50418781|ref|XP_457911.1| DEHA2C05170p [Debaryomyces hansenii CBS767]
gi|74659437|sp|Q6BV58.1|MAK5_DEBHA RecName: Full=ATP-dependent RNA helicase MAK5
gi|49653577|emb|CAG85962.1| DEHA2C05170p [Debaryomyces hansenii CBS767]
Length = 790
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 130/236 (55%), Gaps = 31/236 (13%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W++L L + + L +++PT IQK IP A +GKD+IG A TGSGKTLA+G+PI++
Sbjct: 201 WDDLSLSSFTLNGLSALEYEKPTAIQKRTIPLAI-EGKDVIGKAITGSGKTLAYGIPILE 259
Query: 96 RLLEEREKAGKMLEEKGEEAEKY--APKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153
R L++ KA +++K P G +I PTRELA QV DHL +AK +
Sbjct: 260 RHLQKMAKAN--------QSKKVINPPTG----IIFAPTRELAHQVVDHLNRIAKFTPLS 307
Query: 154 ---VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210
+V I GG+S +KQERLL P +VV TPGR EL+ + L VLDEAD
Sbjct: 308 QHGIVSITGGLSIQKQERLLSHGPGIVVATPGRFLELLQKDMALVQRLSCTDIVVLDEAD 367
Query: 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
R++++GHF E I+++ + + E K QTLVFSAT +
Sbjct: 368 RLLQDGHFDEFVKILELFGKHRPRDNKELEW-------------KWQTLVFSATFS 410
>gi|346466157|gb|AEO32923.1| hypothetical protein [Amblyomma maculatum]
Length = 487
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 127/231 (54%), Gaps = 49/231 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L+L+ ++ + LG K P+PIQ+ CIPA + GKD IG A+TGSGKTLAF LPI+Q
Sbjct: 32 FKDLKLNKWMIDQLDTLGIKNPSPIQENCIPAILN-GKDCIGCAKTGSGKTLAFALPILQ 90
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L E+ P G + ALI+TPTRELA Q+++ K V K +R
Sbjct: 91 KLFED-------------------PYG-IFALILTPTRELAFQISEQFKVVGKAAGLRDC 130
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
IVGGM Q ++L P +VV TPGRL + + + L + F VLDEADR++E
Sbjct: 131 VIVGGMDMVTQGQILAESPHVVVATPGRLADHLESC--NTFTLKRIRFLVLDEADRLLE- 187
Query: 216 GHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
GHF E L++I LP KKRQTL+FSATI
Sbjct: 188 GHFNEQLKTIFAALP------------------------KKRQTLLFSATI 214
>gi|9966805|ref|NP_065147.1| ATP-dependent RNA helicase DDX24 [Homo sapiens]
gi|18202929|sp|Q9GZR7.1|DDX24_HUMAN RecName: Full=ATP-dependent RNA helicase DDX24; AltName: Full=DEAD
box protein 24
gi|9931361|gb|AAG02169.1|AF214731_1 ATP-dependent RNA helicase [Homo sapiens]
gi|10437623|dbj|BAB15079.1| unnamed protein product [Homo sapiens]
gi|12053271|emb|CAB66820.1| hypothetical protein [Homo sapiens]
gi|14250756|gb|AAH08847.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens]
gi|14424802|gb|AAH09406.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens]
gi|117645896|emb|CAL38415.1| hypothetical protein [synthetic construct]
gi|119601957|gb|EAW81551.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24, isoform CRA_b [Homo
sapiens]
gi|123993695|gb|ABM84449.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [synthetic construct]
gi|124000001|gb|ABM87509.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [synthetic construct]
gi|208967745|dbj|BAG72518.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [synthetic construct]
Length = 859
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 362 DKEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 420
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 421 LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 480
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 481 HFAELSQLLEML------NDSQY-------------NPKRQTLVFSATLTLVHQAPARIL 521
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 522 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 568
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 190 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 249
Query: 92 PIMQRLLEEREK 103
P++ +L+ +++
Sbjct: 250 PMIHAVLQWQKR 261
>gi|197101980|ref|NP_001125038.1| ATP-dependent RNA helicase DDX24 [Pongo abelii]
gi|75061972|sp|Q5RDL2.1|DDX24_PONAB RecName: Full=ATP-dependent RNA helicase DDX24; AltName: Full=DEAD
box protein 24
gi|55726767|emb|CAH90145.1| hypothetical protein [Pongo abelii]
Length = 859
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 362 DKEQTGNLKQELDDKSATCKTY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 420
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 421 LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 480
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 481 HFAELSQLLEML------NDSQY-------------NPKRQTLVFSATLTLVHQAPARIL 521
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 522 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 568
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 190 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQVLTLAPAIRDKLDILGAAETGSGKTLAFAI 249
Query: 92 PIMQRLLE 99
P++ +L+
Sbjct: 250 PMIHAVLQ 257
>gi|66911843|gb|AAH96826.1| DDX24 protein [Homo sapiens]
Length = 804
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 307 DKEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 365
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 366 LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 425
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 426 HFAELSQLLEML------NDSQY-------------NPKRQTLVFSATLTLVHQAPARIL 466
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 467 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 513
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 67 AAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLE 99
AA DI+GAAETGSGKTLAF +P++ +L+
Sbjct: 170 AAIRDKLDILGAAETGSGKTLAFAIPMIHAVLQ 202
>gi|426377845|ref|XP_004055664.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Gorilla gorilla
gorilla]
Length = 859
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 362 DKEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 420
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 421 LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 480
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 481 HFAELSQLLEML------NDSQY-------------NPKRQTLVFSATLTLVHQAPARIL 521
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 522 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 568
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 190 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 249
Query: 92 PIMQRLLEEREK 103
P++ +L+ +++
Sbjct: 250 PMIHAVLQWQKR 261
>gi|414589946|tpg|DAA40517.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 773
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 140/255 (54%), Gaps = 48/255 (18%)
Query: 13 SNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
++GP D S S +++ EL L L+++ LG+++PTPIQ ACIP A G
Sbjct: 146 TSGPVDPSNFFSSSDRASFHANSFLELNLSRPLVRACEALGYQKPTPIQAACIPLAL-TG 204
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIIT 130
+DI G+A TGSGKT AF LP+++RLL + PK +R LI+T
Sbjct: 205 RDICGSAITGSGKTAAFSLPVLERLL-------------------FRPKRVPAIRVLILT 245
Query: 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
PTRELA Q+ ++++A+ ++R IVGG+ST+ QE L++ P++VV TPGR+ + +
Sbjct: 246 PTRELAAQIHSMVEKLAQFTDIRCCLIVGGLSTKIQEVALRSMPDIVVATPGRIIDHLRN 305
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
V L L+ +LDEADR++E G E+Q +I M P
Sbjct: 306 SLS--VGLEDLAVVILDEADRLLELGFSAEIQELIRMCP--------------------- 342
Query: 251 LQRKKRQTLVFSATI 265
K+RQT++FSAT+
Sbjct: 343 ---KRRQTMLFSATM 354
>gi|302804021|ref|XP_002983763.1| hypothetical protein SELMODRAFT_268770 [Selaginella moellendorffii]
gi|300148600|gb|EFJ15259.1| hypothetical protein SELMODRAFT_268770 [Selaginella moellendorffii]
Length = 418
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 132/262 (50%), Gaps = 45/262 (17%)
Query: 37 NELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQR 96
EL + L+ + LG + PTP+Q+AC+P +GKD++G A+TGSGKT AF LPI+QR
Sbjct: 5 KELGVAEWLVGACKELGMRHPTPVQRACVPQIL-KGKDVLGMAQTGSGKTAAFALPILQR 63
Query: 97 LLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
L E P G + AL++TPTRELA Q++D K + G+++R
Sbjct: 64 LGEN-------------------PYG-IFALVMTPTRELAFQISDQFKALGAGVHLRCAV 103
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGM Q ++L RP +V+ TPGR+ + F VLDEAD +++ G
Sbjct: 104 VVGGMDMTTQAQILTERPHVVIATPGRIKAHLGSDPDIAAAFSKTKFLVLDEADLLLDRG 163
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
ELQ+I D + K+RQTL+FSAT+ + L
Sbjct: 164 FQDELQTIFDGIS------------------------KQRQTLLFSATMTGDLQALRDLF 199
Query: 277 HGSLKLKQSVNGLNSIETLSER 298
Q+ GL ++E+L +R
Sbjct: 200 GHRAFFYQAYEGLKTVESLDQR 221
>gi|402877046|ref|XP_003902254.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Papio anubis]
Length = 856
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 360 DKEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 418
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 419 LVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 478
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 479 HFAELSQLLEML------NDSQYN-------------PKRQTLVFSATLTLVHQAPARIL 519
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 520 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 566
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 188 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTLAFAI 247
Query: 92 PIMQRLLEEREK 103
P++ +L+ +++
Sbjct: 248 PVIHAVLQWQKR 259
>gi|194386302|dbj|BAG59715.1| unnamed protein product [Homo sapiens]
Length = 763
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 319 DKEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 377
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 378 LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 437
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 438 HFAELSQLLEML------NDSQY-------------NPKRQTLVFSATLTLVHQAPARIL 478
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 479 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 525
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 147 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 206
Query: 92 PIMQRLLE 99
P++ +L+
Sbjct: 207 PMIHAVLQ 214
>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
Length = 770
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 140/255 (54%), Gaps = 48/255 (18%)
Query: 13 SNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
++GP D S + +++ EL L L+++ LG+++PTPIQ ACIP A G
Sbjct: 141 TSGPVDPSNFFASSEGATFHANSFLELNLSRPLVRACEALGYQKPTPIQAACIPLAL-TG 199
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIIT 130
+DI G+A TGSGKT AF LP+++RLL + PK +R LI+T
Sbjct: 200 RDICGSAITGSGKTAAFSLPVLERLL-------------------FRPKRVPAIRVLILT 240
Query: 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
PTRELA QV ++++A+ ++R IVGG+ST+ QE L++ P++VV TPGR+ + +
Sbjct: 241 PTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRN 300
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
V L L+ +LDEADR++E G E+Q +I M P
Sbjct: 301 SLS--VGLEDLAVVILDEADRLLELGFSAEIQELIRMCP--------------------- 337
Query: 251 LQRKKRQTLVFSATI 265
K+RQT++FSAT+
Sbjct: 338 ---KRRQTMLFSATM 349
>gi|119601958|gb|EAW81552.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24, isoform CRA_c [Homo
sapiens]
Length = 840
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 362 DKEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 420
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 421 LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 480
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 481 HFAELSQLLEML------NDSQY-------------NPKRQTLVFSATLTLVHQAPARIL 521
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 522 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 568
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 190 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 249
Query: 92 PIMQRLLEEREK 103
P++ +L+ +++
Sbjct: 250 PMIHAVLQWQKR 261
>gi|119601956|gb|EAW81550.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24, isoform CRA_a [Homo
sapiens]
Length = 670
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 362 DKEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 420
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 421 LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 480
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 481 HFAELSQLLEML------NDSQY-------------NPKRQTLVFSATLTLVHQAPARIL 521
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 522 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 568
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 190 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 249
Query: 92 PIMQRLLEEREK 103
P++ +L+ +++
Sbjct: 250 PMIHAVLQWQKR 261
>gi|323334595|gb|EGA75969.1| Mak5p [Saccharomyces cerevisiae AWRI796]
Length = 700
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 156/303 (51%), Gaps = 41/303 (13%)
Query: 36 WNELR-LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
W L L +++S+ L F PT IQK IP QG D++G A TGSGKTLA+G+PI+
Sbjct: 168 WTNLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIM-QGVDVMGKASTGSGKTLAYGIPIV 226
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI---- 150
++L+ + K +LI TPTRELA QVTDHLK++ + +
Sbjct: 227 EKLISNFSRKNK----------------KPISLIFTPTRELAHQVTDHLKKICEPVLAKS 270
Query: 151 NVRVVPIVGGMSTEKQERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
++ + GG+S +KQ+RLLK ++V+ TPGR EL+ + + +LDE
Sbjct: 271 QYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVDTLILDE 330
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++++GHF E + II L + N SE + K QTL+FSAT S
Sbjct: 331 ADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSS----------KIWQTLIFSAT--FS 378
Query: 269 ADFRKKLKHG----SLKLKQSVNGLNS-IETLSERAGMRANVAIVDLTNVSVLANKLEES 323
D KL + K + + LN+ I+ L + + I+D S ++++++ES
Sbjct: 379 IDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSSQIKES 438
Query: 324 FIE 326
IE
Sbjct: 439 LIE 441
>gi|194385874|dbj|BAG65312.1| unnamed protein product [Homo sapiens]
Length = 609
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 112 DKEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 170
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 171 LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 230
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 231 HFAELSQLLEML------NDSQYN-------------PKRQTLVFSATLTLVHQAPARIL 271
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 272 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 318
>gi|190408703|gb|EDV11968.1| ATP-dependent RNA helicase MAK5 [Saccharomyces cerevisiae RM11-1a]
Length = 769
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 157/303 (51%), Gaps = 41/303 (13%)
Query: 36 WNELR-LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
W L L +++S+ L F PT IQK IP QG D++G A TGSGKTLA+G+PI+
Sbjct: 168 WTNLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIM-QGVDVMGKASTGSGKTLAYGIPIV 226
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI---- 150
++L+ + K P +LI TPTRELA QVTDHLK++ + +
Sbjct: 227 EKLISNFSRKNK------------KP----ISLIFTPTRELAHQVTDHLKKICEPVLAKS 270
Query: 151 NVRVVPIVGGMSTEKQERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
++ + GG+S +KQ+RLLK ++V+ TPGR EL+ + + +LDE
Sbjct: 271 QYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVDTLILDE 330
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++++GHF E + II L + N SE + K QTL+FSAT S
Sbjct: 331 ADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSS----------KIWQTLIFSAT--FS 378
Query: 269 ADFRKKLKHG----SLKLKQSVNGLNS-IETLSERAGMRANVAIVDLTNVSVLANKLEES 323
D KL + K + + LN+ I+ L + + I+D S ++++++ES
Sbjct: 379 IDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSSQIKES 438
Query: 324 FIE 326
IE
Sbjct: 439 LIE 441
>gi|6319618|ref|NP_009700.1| Mak5p [Saccharomyces cerevisiae S288c]
gi|586550|sp|P38112.1|MAK5_YEAST RecName: Full=ATP-dependent RNA helicase MAK5; AltName:
Full=Maintenance of killer protein 5
gi|536442|emb|CAA85100.1| MAK5 [Saccharomyces cerevisiae]
gi|547578|emb|CAA55539.1| YBR1119 [Saccharomyces cerevisiae]
gi|285810473|tpg|DAA07258.1| TPA: Mak5p [Saccharomyces cerevisiae S288c]
gi|392300984|gb|EIW12073.1| Mak5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 773
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 158/303 (52%), Gaps = 41/303 (13%)
Query: 36 WNELR-LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
W L L +++S+ L F PT IQK IP QG D++G A TGSGKTLA+G+PI+
Sbjct: 172 WTNLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIM-QGVDVMGKASTGSGKTLAYGIPIV 230
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI---- 150
++L+ + K P +LI TPTRELA QVTDHLK++ + +
Sbjct: 231 EKLISNFSQKNK------------KP----ISLIFTPTRELAHQVTDHLKKICEPVLAKS 274
Query: 151 NVRVVPIVGGMSTEKQERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
++ + GG+S +KQ+RLLK ++V+ TPGR EL+ + ++ +LDE
Sbjct: 275 QYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVNTLILDE 334
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++++GHF E + II L + N SE + K QTL+FSAT S
Sbjct: 335 ADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSS----------KIWQTLIFSAT--FS 382
Query: 269 ADFRKKLKHG----SLKLKQSVNGLNS-IETLSERAGMRANVAIVDLTNVSVLANKLEES 323
D KL + K + + LN+ I+ L + + I+D S ++++++ES
Sbjct: 383 IDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSSQIKES 442
Query: 324 FIE 326
IE
Sbjct: 443 LIE 445
>gi|207347639|gb|EDZ73745.1| YBR142Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|290878158|emb|CBK39217.1| Mak5p [Saccharomyces cerevisiae EC1118]
Length = 769
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 157/303 (51%), Gaps = 41/303 (13%)
Query: 36 WNELR-LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
W L L +++S+ L F PT IQK IP QG D++G A TGSGKTLA+G+PI+
Sbjct: 168 WTNLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIM-QGVDVMGKASTGSGKTLAYGIPIV 226
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI---- 150
++L+ + K P +LI TPTRELA QVTDHLK++ + +
Sbjct: 227 EKLISNFSRKNK------------KP----ISLIFTPTRELAHQVTDHLKKICEPVLAKS 270
Query: 151 NVRVVPIVGGMSTEKQERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
++ + GG+S +KQ+RLLK ++V+ TPGR EL+ + + +LDE
Sbjct: 271 QYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVDTLILDE 330
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++++GHF E + II L + N SE + K QTL+FSAT S
Sbjct: 331 ADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSS----------KIWQTLIFSAT--FS 378
Query: 269 ADFRKKLKHG----SLKLKQSVNGLNS-IETLSERAGMRANVAIVDLTNVSVLANKLEES 323
D KL + K + + LN+ I+ L + + I+D S ++++++ES
Sbjct: 379 IDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSSQIKES 438
Query: 324 FIE 326
IE
Sbjct: 439 LIE 441
>gi|414886235|tpg|DAA62249.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 770
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 140/255 (54%), Gaps = 48/255 (18%)
Query: 13 SNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
++GP D S + +++ EL L L+++ LG+++PTPIQ ACIP A G
Sbjct: 141 TSGPVDPSNFFASSEGATFHANSFLELNLSRPLVRACEALGYQKPTPIQAACIPLAL-TG 199
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIIT 130
+DI G+A TGSGKT AF LP+++RLL + PK +R LI+T
Sbjct: 200 RDICGSAITGSGKTAAFSLPVLERLL-------------------FRPKRVPAIRVLILT 240
Query: 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
PTRELA QV ++++A+ ++R IVGG+ST+ QE L++ P++VV TPGR+ + +
Sbjct: 241 PTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRN 300
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
V L L+ +LDEADR++E G E+Q +I M P
Sbjct: 301 SLS--VGLEDLAVVILDEADRLLELGFSAEIQELIRMCP--------------------- 337
Query: 251 LQRKKRQTLVFSATI 265
K+RQT++FSAT+
Sbjct: 338 ---KRRQTMLFSATM 349
>gi|309792104|ref|ZP_07686577.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG-6]
gi|308225848|gb|EFO79603.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG6]
Length = 422
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 124/230 (53%), Gaps = 47/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + LHP LM+++ GF +PTPIQ IP A G+++IG A+TG+GKT AF LPI+Q
Sbjct: 3 FADFALHPALMQNVSAQGFTQPTPIQAQTIPLAL-SGQNLIGLAQTGTGKTAAFVLPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RLL+ R++ + ALI+TPTRELA Q+ D ++ +A G +R
Sbjct: 62 RLLQNRQRGTQ-------------------ALIVTPTRELAEQINDTIRVLAHGTGLRSA 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG+ E QER L+A E+VV PGRL + + G L + VLDEADRM++
Sbjct: 103 PIYGGVGMEPQERALRAGVEIVVACPGRLIDHLGRGS---ARLDGVQMLVLDEADRMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +Q I+ LP +RQT++FSAT+
Sbjct: 160 GFLPAIQRILSALP------------------------TRRQTMLFSATL 185
>gi|414589947|tpg|DAA40518.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein,
partial [Zea mays]
Length = 786
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 140/255 (54%), Gaps = 48/255 (18%)
Query: 13 SNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
++GP D S S +++ EL L L+++ LG+++PTPIQ ACIP A G
Sbjct: 162 TSGPVDPSNFFSSSDRASFHANSFLELNLSRPLVRACEALGYQKPTPIQAACIPLAL-TG 220
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIIT 130
+DI G+A TGSGKT AF LP+++RLL + PK +R LI+T
Sbjct: 221 RDICGSAITGSGKTAAFSLPVLERLL-------------------FRPKRVPAIRVLILT 261
Query: 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
PTRELA Q+ ++++A+ ++R IVGG+ST+ QE L++ P++VV TPGR+ + +
Sbjct: 262 PTRELAAQIHSMVEKLAQFTDIRCCLIVGGLSTKIQEVALRSMPDIVVATPGRIIDHLRN 321
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
V L L+ +LDEADR++E G E+Q +I M P
Sbjct: 322 SLS--VGLEDLAVVILDEADRLLELGFSAEIQELIRMCP--------------------- 358
Query: 251 LQRKKRQTLVFSATI 265
K+RQT++FSAT+
Sbjct: 359 ---KRRQTMLFSATM 370
>gi|194383912|dbj|BAG59314.1| unnamed protein product [Homo sapiens]
Length = 766
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 269 DKEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 327
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 328 LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 387
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 388 HFAELSQLLEML------NDSQYN-------------PKRQTLVFSATLTLVHQAPARIL 428
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 429 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 475
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 23/26 (88%)
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLE 99
DI+GAAETGSGKTLAF +P++ +L+
Sbjct: 139 DILGAAETGSGKTLAFAIPMIHAVLQ 164
>gi|50557160|ref|XP_505988.1| YALI0F28391p [Yarrowia lipolytica]
gi|74659615|sp|Q6C024.1|PRP28_YARLI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
gi|49651858|emb|CAG78800.1| YALI0F28391p [Yarrowia lipolytica CLIB122]
Length = 575
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 144/241 (59%), Gaps = 21/241 (8%)
Query: 29 ISTEFDAWNELRLHP-LLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
I +WNE + P ++ +I R+G+KEPTPIQ+A IP A +D+IG AETGSGKT
Sbjct: 157 IPNPLRSWNECKEIPGIVRDTISRMGYKEPTPIQRAAIPIALGI-RDVIGVAETGSGKTA 215
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
+F +P++ + E L + E ++ P G LI+ PTRELA+Q+ D +
Sbjct: 216 SFLIPLISYICE--------LPKLDERSKVNGPYG----LILAPTRELAMQIKDEAVKFC 263
Query: 148 KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 207
+ +VV +VGG S ++Q ++ EL+V TPGRL +++ ++ L+ L+ + V+D
Sbjct: 264 APLGFKVVSVVGGYSAQEQALAVQEGAELIVATPGRLLDVI---DRRLLVLNQCCYVVMD 320
Query: 208 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267
EADRM++ G ++Q ++ LP +N + S++ + VS+ R+ RQT++++AT+ +
Sbjct: 321 EADRMVDMGFEEQVQKVLASLPSSNAKPD--SDEAENLAAVST--RRYRQTMMYTATMPV 376
Query: 268 S 268
+
Sbjct: 377 A 377
>gi|397525830|ref|XP_003832856.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Pan paniscus]
Length = 859
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 126/228 (55%), Gaps = 25/228 (10%)
Query: 101 REKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
+E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++ +
Sbjct: 363 KEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAIL 421
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E GH
Sbjct: 422 VGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGH 481
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277
F EL +++ML N+ Q KRQTLVFSAT+ L ++ H
Sbjct: 482 FAELSQLLEML------NDSQYN-------------PKRQTLVFSATLTLVHQAPARILH 522
Query: 278 GSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 523 K--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 568
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 190 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLVPAIRDKLDILGAAETGSGKTLAFAI 249
Query: 92 PIMQRLLEEREK 103
P++ +L+ +++
Sbjct: 250 PMIHVVLQWQKR 261
>gi|349576517|dbj|GAA21688.1| K7_Mak5p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 773
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 157/303 (51%), Gaps = 41/303 (13%)
Query: 36 WNELR-LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
W L L +++S+ L F PT IQK IP QG D++G A TGSGKTLA+G+PI+
Sbjct: 172 WTNLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIM-QGVDVMGKASTGSGKTLAYGIPIV 230
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI---- 150
++L+ + K P +LI TPTRELA QVTDHLK++ + +
Sbjct: 231 EKLISNFSQKNK------------KP----ISLIFTPTRELAHQVTDHLKKICEPVLAKS 274
Query: 151 NVRVVPIVGGMSTEKQERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
++ + GG+S +KQ+RLLK ++V+ TPGR EL+ + + +LDE
Sbjct: 275 QYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVDTLILDE 334
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++++GHF E + II L + N SE + K QTL+FSAT S
Sbjct: 335 ADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSS----------KIWQTLIFSAT--FS 382
Query: 269 ADFRKKLKHG----SLKLKQSVNGLNS-IETLSERAGMRANVAIVDLTNVSVLANKLEES 323
D KL + K + + LN+ I+ L + + I+D S ++++++ES
Sbjct: 383 IDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSSQIKES 442
Query: 324 FIE 326
IE
Sbjct: 443 LIE 445
>gi|84578997|dbj|BAE72932.1| hypothetical protein [Macaca fascicularis]
Length = 819
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 323 DKEQIGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 381
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 382 LVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 441
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 442 HFAELSQLLEML------NDSQYN-------------PKRQTLVFSATLTLVHQAPARIL 482
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 483 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 529
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 151 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTLAFAI 210
Query: 92 PIMQRLLEEREK 103
P++ +L+ +++
Sbjct: 211 PVIHAVLQWQKR 222
>gi|160409988|sp|A6ZL85.1|MAK5_YEAS7 RecName: Full=ATP-dependent RNA helicase MAK5; AltName:
Full=Maintenance of killer protein 5
gi|151946532|gb|EDN64754.1| maintenance of killer [Saccharomyces cerevisiae YJM789]
Length = 769
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 157/303 (51%), Gaps = 41/303 (13%)
Query: 36 WNELR-LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
W L L +++S+ L F PT IQK IP QG D++G A TGSGKTLA+G+PI+
Sbjct: 168 WTNLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIM-QGVDVMGKASTGSGKTLAYGIPIV 226
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI---- 150
++L+ + K P +LI TPTRELA QVTDHLK++ + +
Sbjct: 227 EKLISNFSQKNK------------KP----ISLIFTPTRELAHQVTDHLKKICEPVLAKS 270
Query: 151 NVRVVPIVGGMSTEKQERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
++ + GG+S +KQ+RLLK ++V+ TPGR EL+ + + +LDE
Sbjct: 271 QYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVDTLILDE 330
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++++GHF E + II L + N SE + K QTL+FSAT S
Sbjct: 331 ADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSS----------KIWQTLIFSAT--FS 378
Query: 269 ADFRKKLKHG----SLKLKQSVNGLNS-IETLSERAGMRANVAIVDLTNVSVLANKLEES 323
D KL + K + + LN+ I+ L + + I+D S ++++++ES
Sbjct: 379 IDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSSQIKES 438
Query: 324 FIE 326
IE
Sbjct: 439 LIE 441
>gi|440905703|gb|ELR56052.1| ATP-dependent RNA helicase DDX24 [Bos grunniens mutus]
Length = 850
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 124/226 (54%), Gaps = 23/226 (10%)
Query: 100 EREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 159
+ E+AGK+ +E G PK L L++TPTRELA+QV H+ VAK +++ +VG
Sbjct: 361 DEEQAGKLKQELG--GSTVPPKRPLLGLVLTPTRELAVQVKQHVDAVAKFTSIKTAILVG 418
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR 219
GMST+KQ+RLL +PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GHF
Sbjct: 419 GMSTQKQQRLLNRQPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFA 478
Query: 220 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279
EL ++++L S KRQTLVFSAT+ L ++ H
Sbjct: 479 ELSQLLEVL-------------------SDSQYNPKRQTLVFSATLTLVHQAPARILHK- 518
Query: 280 LKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 519 -KHAKKMDKTAKLDLLMQKIGMRGKPKVIDLTRKEATVETLTETKI 563
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 189 DVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 248
Query: 92 PIMQRLL 98
P++ +L
Sbjct: 249 PMIDAVL 255
>gi|256268948|gb|EEU04293.1| Mak5p [Saccharomyces cerevisiae JAY291]
Length = 769
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 157/303 (51%), Gaps = 41/303 (13%)
Query: 36 WNELR-LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
W L L +++S+ L F PT IQK IP QG D++G A TGSGKTLA+G+PI+
Sbjct: 168 WTNLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIM-QGVDVMGKASTGSGKTLAYGIPIV 226
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI---- 150
++L+ + K P +LI TPTRELA QVTDHLK++ + +
Sbjct: 227 EKLISNFSQKNK------------KP----ISLIFTPTRELAHQVTDHLKKICEPVLAKS 270
Query: 151 NVRVVPIVGGMSTEKQERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
++ + GG+S +KQ+RLLK ++V+ TPGR EL+ + + +LDE
Sbjct: 271 QYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVDTLILDE 330
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++++GHF E + II L + N SE + K QTL+FSAT S
Sbjct: 331 ADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSS----------KIWQTLIFSAT--FS 378
Query: 269 ADFRKKLKHG----SLKLKQSVNGLNS-IETLSERAGMRANVAIVDLTNVSVLANKLEES 323
D KL + K + + LN+ I+ L + + I+D S ++++++ES
Sbjct: 379 IDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSSQIKES 438
Query: 324 FIE 326
IE
Sbjct: 439 LIE 441
>gi|380814882|gb|AFE79315.1| ATP-dependent RNA helicase DDX24 [Macaca mulatta]
Length = 856
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 360 DKEQIGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 418
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 419 LVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 478
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 479 HFAELSQLLEML------NDSQYN-------------PKRQTLVFSATLTLVHQAPARIL 519
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 520 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 566
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 188 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTLAFAI 247
Query: 92 PIMQRLLEEREK 103
P++ +L+ +++
Sbjct: 248 PVIHAVLQWQKR 259
>gi|355778814|gb|EHH63850.1| hypothetical protein EGM_16904 [Macaca fascicularis]
Length = 856
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 360 DKEQIGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 418
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 419 LVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 478
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 479 HFAELSQLLEML------NDSQYN-------------PKRQTLVFSATLTLVHQAPARIL 519
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 520 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 566
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 188 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTLAFAI 247
Query: 92 PIMQRLLEEREK 103
P++ +L+ +++
Sbjct: 248 PVIHAVLQWQKR 259
>gi|323356090|gb|EGA87895.1| Mak5p [Saccharomyces cerevisiae VL3]
Length = 526
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 40/293 (13%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
+++S+ L F PT IQK IP QG D++G A TGSGKTLA+G+PI+++L+ +
Sbjct: 3 ILQSLQNLNFLRPTEIQKKSIPVIM-QGVDVMGKASTGSGKTLAYGIPIVEKLISNFSQK 61
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI----NVRVVPIVGG 160
K P +LI TPTRELA QVTDHLK++ + + ++ + GG
Sbjct: 62 NK------------KPI----SLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGG 105
Query: 161 MSTEKQERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 218
+S +KQ+RLLK ++V+ TPGR EL+ + + +LDEADR++++GHF
Sbjct: 106 LSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHF 165
Query: 219 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 278
E + II L + N SE + K QTL+FSAT S D KL
Sbjct: 166 DEFEKIIKHLLVERRKNRENSEGSS----------KIWQTLIFSAT--FSIDLFDKLSSS 213
Query: 279 ----SLKLKQSVNGLNS-IETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
+ K + + LN+ I+ L + + I+D S ++++++ES IE
Sbjct: 214 RQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSSQIKESLIE 266
>gi|355693530|gb|EHH28133.1| hypothetical protein EGK_18492 [Macaca mulatta]
gi|387541990|gb|AFJ71622.1| ATP-dependent RNA helicase DDX24 [Macaca mulatta]
Length = 856
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 360 DKEQIGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 418
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 419 LVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 478
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 479 HFAELSQLLEML------NDSQYN-------------PKRQTLVFSATLTLVHQAPARIL 519
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 520 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 566
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 188 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTLAFAI 247
Query: 92 PIMQRLLEEREK 103
P++ +L+ +++
Sbjct: 248 PVIHAVLQWQKR 259
>gi|358057374|dbj|GAA96723.1| hypothetical protein E5Q_03395 [Mixia osmundae IAM 14324]
Length = 750
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 177/362 (48%), Gaps = 61/362 (16%)
Query: 13 SNGPDDAEEE--LVSEAEISTEFD-----AWNELRLHPLLMKSIYRLGFKEPTPIQKACI 65
S PDDAE ++ EFD + LHP L ++ LGF +PTPIQ+A
Sbjct: 107 SAQPDDAEPASGTADADQLLREFDFAHLPGYVPQSLHPALAHAMLELGFSKPTPIQRATF 166
Query: 66 P---AAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122
A KDI+G A+TGSGKTLA+GLPI+ ++ + + K P+
Sbjct: 167 DIMLGADAVLKDIMGIAQTGSGKTLAYGLPILDQIFRQNARW----------PSKEQPR- 215
Query: 123 HLRALIITPTRELALQVTDHLKEV-----AKGINVR-----------VVPIVGGMSTEKQ 166
L ALI+ PTRELA+QV HL V + GI+ + +V +VGG+S KQ
Sbjct: 216 KLTALILLPTRELAMQVKTHLATVITNASSAGIDTKGKGKGPYPFANIVAVVGGISVLKQ 275
Query: 167 ERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
R L +++V TPGRLWE++ + ++ L + VLDEADRM++ GHF EL I
Sbjct: 276 RRQLAVDRGIDIIVATPGRLWEMIDDDDDLARKIAALDYLVLDEADRMVQAGHFVELDKI 335
Query: 225 IDMLPMTN---------------GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269
+D+ N + +Q +V + +T++FSAT LS
Sbjct: 336 LDLTRRGNSSSISHDSSAPDVDIADQDKPDDQAFAEQSVRPNGNPRMRTMIFSAT--LSK 393
Query: 270 DFRKKLKHGSLK----LKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEESF 324
D + L L+ ++++ +I+ L + R + A+++L+++ + L+E F
Sbjct: 394 DLQVNLSIPHLRNLRAIRKAGGSQGAIDDLLLKIDFRDPDPALINLSSMQGTVDTLQECF 453
Query: 325 IE 326
++
Sbjct: 454 VD 455
>gi|358057375|dbj|GAA96724.1| hypothetical protein E5Q_03394 [Mixia osmundae IAM 14324]
Length = 751
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 177/362 (48%), Gaps = 61/362 (16%)
Query: 13 SNGPDDAEEE--LVSEAEISTEFD-----AWNELRLHPLLMKSIYRLGFKEPTPIQKACI 65
S PDDAE ++ EFD + LHP L ++ LGF +PTPIQ+A
Sbjct: 107 SAQPDDAEPASGTADADQLLREFDFAHLPGYVPQSLHPALAHAMLELGFSKPTPIQRATF 166
Query: 66 P---AAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122
A KDI+G A+TGSGKTLA+GLPI+ ++ + + K P+
Sbjct: 167 DIMLGADAVLKDIMGIAQTGSGKTLAYGLPILDQIFRQNARW----------PSKEQPR- 215
Query: 123 HLRALIITPTRELALQVTDHLKEV-----AKGINVR-----------VVPIVGGMSTEKQ 166
L ALI+ PTRELA+QV HL V + GI+ + +V +VGG+S KQ
Sbjct: 216 KLTALILLPTRELAMQVKTHLATVITNASSAGIDTKGKGKGPYPFANIVAVVGGISVLKQ 275
Query: 167 ERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
R L +++V TPGRLWE++ + ++ L + VLDEADRM++ GHF EL I
Sbjct: 276 RRQLAVDRGIDIIVATPGRLWEMIDDDDDLARKIAALDYLVLDEADRMVQAGHFVELDKI 335
Query: 225 IDMLPMTN---------------GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269
+D+ N + +Q +V + +T++FSAT LS
Sbjct: 336 LDLTRRGNSSSISHDSSAPDVDIADQDKPDDQAFAEQSVRPNGNPRMRTMIFSAT--LSK 393
Query: 270 DFRKKLKHGSLK----LKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEESF 324
D + L L+ ++++ +I+ L + R + A+++L+++ + L+E F
Sbjct: 394 DLQVNLSIPHLRNLRAIRKAGGSQGAIDDLLLKIDFRDPDPALINLSSMQGTVDTLQECF 453
Query: 325 IE 326
++
Sbjct: 454 VD 455
>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase [Acidaminococcus fermentans DSM 20731]
gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
DSM 20731]
Length = 544
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 137/241 (56%), Gaps = 48/241 (19%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+ AE E ++ +L L ++ ++ +GF+EP+PIQK IP A +G+D+IG A+TG+G
Sbjct: 10 TTAESKPEITSFEDLNLDRKILAALKEMGFEEPSPIQKGAIPMAL-EGEDLIGQAQTGTG 68
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KT AFG+PI+Q++ E+ H++AL+++PTREL +QV D +
Sbjct: 69 KTAAFGIPIIQKINEKDR--------------------HIQALVMSPTRELCIQVADEIS 108
Query: 145 EVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204
++ K +RV+P+ GG E+Q R LK ++V+GTPGRL + + G ++L ++F
Sbjct: 109 KIGKTKRIRVLPVYGGQPIERQIRSLKRGIQVVIGTPGRLLDHIRRG---TIDLEYVNFL 165
Query: 205 VLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
VLDEAD M++ G ++++II +P +RQT++FSAT
Sbjct: 166 VLDEADEMLDMGFVDDMENIIKNVP------------------------PERQTMLFSAT 201
Query: 265 I 265
+
Sbjct: 202 M 202
>gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
DSM 15470]
gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
DSM 15470]
Length = 510
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 132/233 (56%), Gaps = 48/233 (20%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
+D + EL L P +MK+I +GF+EPTPIQK IPAA +GKD+IG A+TG+GKT AFG+P
Sbjct: 2 YDTFKELGLVPEIMKAIEDMGFEEPTPIQKVSIPAAM-EGKDLIGQAQTGTGKTAAFGIP 60
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
I++++ EKG +A ++++PTRELA+Q + + +A+ + +
Sbjct: 61 ILEKI---------DTTEKGPQA-----------IVLSPTRELAIQSAEEMNRLAQYLPI 100
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+PI GG E+Q R L+ +P ++V TPGRL + M G ++L + VLDE D M
Sbjct: 101 HALPIYGGQDIERQFRALRKKPNIIVATPGRLMDHMKRG---TIDLSHVQILVLDEGDEM 157
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ G ++++I+ +P ++RQT+ FSAT+
Sbjct: 158 VDMGFIDDIRTILAGMP------------------------EERQTMFFSATM 186
>gi|168010159|ref|XP_001757772.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691048|gb|EDQ77412.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 753
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 131/232 (56%), Gaps = 48/232 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L+++ LG++EPTPIQ ACIP A G+DI G+A TGSGKT AF LP+++
Sbjct: 130 FGELNLSRPLIRACETLGYREPTPIQAACIPLAL-TGRDICGSAVTGSGKTGAFALPMLE 188
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIITPTRELALQVTDHLKEVAKGINVR 153
RLL Y P+ +R LI+TPTRELA+QV ++++A+ +V
Sbjct: 189 RLL-------------------YRPRRIPAIRCLILTPTRELAVQVHSMVQKLAQFTDVT 229
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+VGG+S++ QE L+ARP++VV TPGR+ + + V L LS VLDEADR++
Sbjct: 230 SAIVVGGLSSKVQEVALRARPDIVVATPGRMLDHLQNSLS--VGLEDLSILVLDEADRLL 287
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
E G +E+ ++ P K+RQT++FSAT+
Sbjct: 288 ELGFTQEVHELVRQCP------------------------KRRQTMLFSATM 315
>gi|365766859|gb|EHN08348.1| Mak5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 769
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 156/303 (51%), Gaps = 41/303 (13%)
Query: 36 WNELR-LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
W L L +++S+ L F PT IQK IP QG D++G A TGSGKTLA+G+PI+
Sbjct: 168 WTNLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIM-QGVDVMGKASTGSGKTLAYGIPIV 226
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI---- 150
++L+ K P +LI TPTRELA QVTDHLK++ + +
Sbjct: 227 EKLISNFSXKNK------------KP----ISLIFTPTRELAHQVTDHLKKICEPVLAKS 270
Query: 151 NVRVVPIVGGMSTEKQERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
++ + GG+S +KQ+RLLK ++V+ TPGR EL+ + + +LDE
Sbjct: 271 QYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVDTLILDE 330
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++++GHF E + II L + N SE + K QTL+FSAT S
Sbjct: 331 ADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSS----------KIWQTLIFSAT--FS 378
Query: 269 ADFRKKLKHG----SLKLKQSVNGLNS-IETLSERAGMRANVAIVDLTNVSVLANKLEES 323
D KL + K + + LN+ I+ L + + I+D S ++++++ES
Sbjct: 379 IDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSSQIKES 438
Query: 324 FIE 326
IE
Sbjct: 439 LIE 441
>gi|114654532|ref|XP_001151974.1| PREDICTED: ATP-dependent RNA helicase DDX24 isoform 6 [Pan
troglodytes]
gi|410227214|gb|JAA10826.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Pan troglodytes]
gi|410252476|gb|JAA14205.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Pan troglodytes]
gi|410299418|gb|JAA28309.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Pan troglodytes]
gi|410331293|gb|JAA34593.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Pan troglodytes]
Length = 859
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 124/228 (54%), Gaps = 25/228 (10%)
Query: 101 REKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
+E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++ +
Sbjct: 363 KEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAIL 421
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E GH
Sbjct: 422 VGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGH 481
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277
F EL +++ML S KRQTLVFSAT+ L ++ H
Sbjct: 482 FAELSQLLEML-------------------SDSQYNPKRQTLVFSATLTLVHQAPARILH 522
Query: 278 GSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 523 K--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 568
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 190 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLVPAIRDKLDILGAAETGSGKTLAFAI 249
Query: 92 PIMQRLLEEREK 103
P++ +L+ +++
Sbjct: 250 PMIHAVLQWQKR 261
>gi|358065451|ref|ZP_09151993.1| hypothetical protein HMPREF9473_04056 [Clostridium hathewayi
WAL-18680]
gi|356696343|gb|EHI57960.1| hypothetical protein HMPREF9473_04056 [Clostridium hathewayi
WAL-18680]
Length = 534
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 132/230 (57%), Gaps = 42/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L PLL+K++ + G+ +P+PIQ+ IP + +D++G A+TG+GKT AF LPI+Q
Sbjct: 3 FKELNLSPLLLKALEKKGYSQPSPIQEQAIPYVLEK-RDLLGCAQTGTGKTAAFALPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L+E K + K +RALI+TPTRELALQ+ D++KE + V+
Sbjct: 62 NLMECPRKRQQ--------------KKPIRALILTPTRELALQIADNIKEYGEYTPVKGT 107
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S Q + L+ +++V TPGRL +L+ E ++L + FVLDEADRM++
Sbjct: 108 VIFGGVSAVPQIQDLRKGVDILVATPGRLNDLIGQRE---IDLSYVEIFVLDEADRMLDM 164
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ +I +LP KKRQTL+FSAT+
Sbjct: 165 GFIHDVKKVIALLP------------------------KKRQTLLFSATM 190
>gi|343962287|dbj|BAK62731.1| ATP-dependent RNA helicase DDX24 [Pan troglodytes]
Length = 859
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 124/228 (54%), Gaps = 25/228 (10%)
Query: 101 REKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
+E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++ +
Sbjct: 363 KEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAIL 421
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E GH
Sbjct: 422 VGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGH 481
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277
F EL +++ML S KRQTLVFSAT+ L ++ H
Sbjct: 482 FAELSQLLEML-------------------SDSQYNPKRQTLVFSATLTLVHQAPARILH 522
Query: 278 GSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 523 K--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 568
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 190 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLVPAIRDKLDILGAAETGSGKTLAFAI 249
Query: 92 PIMQRLLEEREK 103
P++ +L+ +++
Sbjct: 250 PMIHAVLQWQKR 261
>gi|417405017|gb|JAA49234.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 863
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 123/228 (53%), Gaps = 23/228 (10%)
Query: 100 EREKAGKMLEEKGEEAE--KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
+ E GK+ +E G E K PK L L++TPTRELA+QV H+ VA+ ++ +
Sbjct: 364 DEEWTGKLEQELGGETVTCKAHPKRPLLGLVLTPTRELAVQVKQHMDAVARFTGIKTAIL 423
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
VGGMST+KQ+R+L +PE+VV TPGRLWEL+ HL L L V+DEADRM+E GH
Sbjct: 424 VGGMSTQKQQRMLNRQPEIVVATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGH 483
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277
F EL +++ML S KRQTLVFSAT+ L ++ H
Sbjct: 484 FAELSQLLEML-------------------SDSQYNPKRQTLVFSATLTLVHQAPARILH 524
Query: 278 GSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 525 K--KHTKKIDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 570
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 189 DVSAWKDLFVPKPVLRALSFLGFTAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 248
Query: 92 PIMQRLLE 99
P++ +L+
Sbjct: 249 PMIHSVLQ 256
>gi|335292920|ref|XP_003356831.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Sus scrofa]
Length = 856
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 116/206 (56%), Gaps = 21/206 (10%)
Query: 120 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVG 179
PK L L++TPTRELA+QV H+ VAK ++ +VGGMST+KQ+R+L +PE+V+
Sbjct: 381 PKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVIA 440
Query: 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQS 239
TPGRLWEL+ + HL L L V+DEADRM+E GHF EL +++ML N+ Q
Sbjct: 441 TPGRLWELVKEKQPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEML------NDSQY 494
Query: 240 EQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERA 299
KRQTLVFSAT+ L ++ H K + ++ ++ L ++
Sbjct: 495 N-------------PKRQTLVFSATLTLVHQAPARILHK--KHAKKIDKTAKLDLLMQKI 539
Query: 300 GMRANVAIVDLTNVSVLANKLEESFI 325
GMR ++DLT L E+ I
Sbjct: 540 GMRGKPKVIDLTRNEATVETLTETKI 565
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 189 DVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 248
Query: 92 PIMQRLLE 99
P++ +L+
Sbjct: 249 PMIHAVLQ 256
>gi|427785455|gb|JAA58179.1| Putative atp-dependent rna helicase ddx23 [Rhipicephalus
pulchellus]
Length = 788
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 143/231 (61%), Gaps = 16/231 (6%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+E L ++ I LG+K+PTPIQ+ IP Q +DIIG AETGSGKTLAF LP++
Sbjct: 362 WSECNLPTAILDVIKELGYKDPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLV 420
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ K+ E+ E+A++ P A+I+ PTRELA Q+ + + AK +++R V
Sbjct: 421 WITS----LPKI--ERQEDADQ-GPY----AIIMAPTRELAQQIDEETTKFAKMLDIRSV 469
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
++GG+S E+Q L+ E+V+ TPGRL +++ ++LV L ++ VLDEADRMI+
Sbjct: 470 AVIGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LSRCTYIVLDEADRMIDM 526
Query: 216 GHFRELQSIIDMLPMTNGS-NEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G E+Q I+D +P+TN + +E + + + + K RQT++F+AT+
Sbjct: 527 GFEGEVQKILDYMPVTNQKPDTDDAEDEEKLLANFASKHKYRQTVMFTATM 577
>gi|315645365|ref|ZP_07898490.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315279407|gb|EFU42713.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 506
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 132/230 (57%), Gaps = 42/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L + P+++K++ + +KEPTPIQ IPA G+D++G A+TG+GKT AF +P++Q
Sbjct: 19 FQDLNISPVILKALAKENYKEPTPIQAQAIPAVL-AGRDLLGCAQTGTGKTAAFSVPMIQ 77
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L E+ K G +RAL+++PTRELALQ++D++K ++ +R
Sbjct: 78 LLNEQPPKPGMAR--------------RIRALVLSPTRELALQISDNVKAYSQFTKLRST 123
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
IVGG+S + QER L+ ++++ TPGRL +LM+ + ++L + VLDEADRM++
Sbjct: 124 AIVGGVSQKTQERALQQGADILIATPGRLLDLMN---QKRIDLQHVEILVLDEADRMLDM 180
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II +P K+QTL FSAT+
Sbjct: 181 GFIHDVKRIISKMP------------------------SKKQTLFFSATM 206
>gi|395827747|ref|XP_003787057.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Otolemur garnettii]
Length = 861
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 117/209 (55%), Gaps = 21/209 (10%)
Query: 117 KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPEL 176
K PK L L++TPTRELA+QV H+ VAK ++ +VGGMST+KQ+R+LK PE+
Sbjct: 384 KAYPKHPLLGLVLTPTRELAVQVRQHIDAVAKFTGIKTAILVGGMSTQKQQRMLKRCPEI 443
Query: 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNE 236
V+ TPGRLWEL+ HL L L V+DEADRM+E GHF EL +++ML N+
Sbjct: 444 VIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEML------ND 497
Query: 237 GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLS 296
Q KRQTLVFSAT+ L ++ H K + ++ ++ L
Sbjct: 498 SQYN-------------PKRQTLVFSATLTLIHQVPARILHK--KHTKKMDKTAKLDLLM 542
Query: 297 ERAGMRANVAIVDLTNVSVLANKLEESFI 325
++ GMR+ ++DLT L E+ I
Sbjct: 543 QKIGMRSKPKVIDLTRKEATVETLTETKI 571
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
P A+ + ++ + AW +L + +++++ LGF PTPIQ + A DI
Sbjct: 172 PKQAKTWMPEVSDQKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 231
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREK 103
+GAAETGSGKTLAF +P++ +L+ +++
Sbjct: 232 LGAAETGSGKTLAFAIPVIHAVLQWQKR 259
>gi|403298098|ref|XP_003939872.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Saimiri boliviensis
boliviensis]
Length = 860
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 127/229 (55%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y P+ L L++TPTRELALQV H+ VA+ ++
Sbjct: 363 DKEQTGNLKQELDDKSATCKAY-PERPLLGLVLTPTRELALQVKQHIDAVARFTGIKTAI 421
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 422 LVGGMSTQKQQRMLNRYPEIVIATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 481
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 482 HFAELSQLLEML------NDSQY-------------NPKRQTLVFSATLTLVHQAPARIL 522
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT A L E+ I
Sbjct: 523 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATAETLTETKI 569
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 192 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 251
Query: 92 PIMQRLLE 99
P++ +L+
Sbjct: 252 PMIHAVLQ 259
>gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
Length = 497
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 131/233 (56%), Gaps = 48/233 (20%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
++ + EL L +MK++ +GF+EP+PIQK +P A QGKD+IG A+TG+GKT AFG+P
Sbjct: 8 YETFKELGLSEEIMKAVADMGFEEPSPIQKEAVPIAM-QGKDLIGQAQTGTGKTAAFGIP 66
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
I+QR+ + K P+ A++++PTRELA+Q + + +A+ +N+
Sbjct: 67 ILQRI----------------DTSKPGPQ----AIVLSPTRELAIQSAEEINHLAQYMNI 106
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ +PI GG E+Q R LK + ++V TPGRL + M ++ ++L + VLDE D M
Sbjct: 107 KTIPIYGGQDIERQFRALKKKTNIIVATPGRLMDHM---KRKTIDLSNVQIAVLDEGDEM 163
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ G ++++I+ P K+RQTL FSAT+
Sbjct: 164 VDMGFIDDIRTIMAATP------------------------KERQTLFFSATM 192
>gi|355621610|ref|ZP_09046211.1| hypothetical protein HMPREF1020_00290 [Clostridium sp. 7_3_54FAA]
gi|354823417|gb|EHF07748.1| hypothetical protein HMPREF1020_00290 [Clostridium sp. 7_3_54FAA]
Length = 477
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 132/230 (57%), Gaps = 42/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L+L PLL+K++ G+ P+PIQ+ IP G+D++G A+TG+GKT AF LPI+Q
Sbjct: 3 FKDLQLSPLLLKALEEKGYVSPSPIQEKAIPHVL-AGRDVLGCAQTGTGKTAAFALPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L++ EK KY+ K +R+LI+TPTRELALQ+ ++ KE +VR
Sbjct: 62 NLMKPSEK-------------KYS-KRVIRSLILTPTRELALQIAENFKEYGSRTSVRCA 107
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S Q L+ +++V TPGRL +L+ G V+L + FVLDEADRM++
Sbjct: 108 VIFGGVSANPQIEELRRGIDILVATPGRLNDLVGQG---FVDLAHVEIFVLDEADRMLDM 164
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II +LP+ ++QTL+FSAT+
Sbjct: 165 GFIHDVRKIISLLPV------------------------RKQTLLFSATM 190
>gi|74147720|dbj|BAE38731.1| unnamed protein product [Mus musculus]
Length = 792
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 121/212 (57%), Gaps = 23/212 (10%)
Query: 102 EKAGKMLEEKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 159
E+AGK+ +E ++ Y P+ L L++TPTRELA+QV H+ VAK + +VG
Sbjct: 365 EQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVG 424
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR 219
GMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GHF
Sbjct: 425 GMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFA 484
Query: 220 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279
EL +++ML N+ Q + RQTLVFSAT+ L ++ H
Sbjct: 485 ELSQLLEML------NDSQYNPS-------------RQTLVFSATLTLVHQAPARILHK- 524
Query: 280 LKLKQSVNGLNSIETLSERAGMRANVAIVDLT 311
K + ++ + ++ L ++ GMR ++DLT
Sbjct: 525 -KHVKKMDKTDKLDLLMQKVGMRGKPKVIDLT 555
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 191 DVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 250
Query: 92 PIMQRLLE 99
P++ +L+
Sbjct: 251 PMIHSVLQ 258
>gi|255538978|ref|XP_002510554.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223551255|gb|EEF52741.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 783
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 48/256 (18%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
V++ D+ + S S +++ E+ L L+++ LG+ +PTPIQ ACIP A
Sbjct: 125 VAHNADETKSFFASAEGASFHANSFMEINLSRPLLRACEVLGYTKPTPIQAACIPLAL-T 183
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALII 129
G+DI G+A TGSGKT AF LP ++RLL + PK +R LI+
Sbjct: 184 GRDICGSAITGSGKTAAFALPTLERLL-------------------FRPKRVQAIRVLIL 224
Query: 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189
TPTRELA+QV ++++A+ ++R IVGG+ST+ QE L++ P++VV TPGR+ + +
Sbjct: 225 TPTRELAVQVHSMVEKLAQFTDIRCCLIVGGLSTKVQESALRSMPDIVVATPGRMIDHLR 284
Query: 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVS 249
V+L L+ +LDEADR++E G E+ ++ + P
Sbjct: 285 NTMS--VDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-------------------- 322
Query: 250 SLQRKKRQTLVFSATI 265
K+RQT++FSAT+
Sbjct: 323 ----KRRQTMLFSATM 334
>gi|388852351|emb|CCF53966.1| related to MAK5-ATP-dependent RNA helicase [Ustilago hordei]
Length = 969
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 179/380 (47%), Gaps = 88/380 (23%)
Query: 32 EFD-----AWNELRLHPLLMKSIYRLGFKEPTPIQKACIP-------------------- 66
EFD AW+ L LHP L +++ GF +PT IQ +P
Sbjct: 240 EFDDQLLPAWSHLPLHPALKRALAHKGFTKPTEIQDRSLPFALGLQSQQEAESSIDDSHE 299
Query: 67 --------AAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 118
+++ + +D++G ++TGSGKTLA+GL I+ L E E A + E+
Sbjct: 300 DAKQATATSSSQKKRDVVGVSQTGSGKTLAYGLAILNHLFENAENAIASSSSRRNALEQV 359
Query: 119 APKGHLRALIITPTRELALQVTDHLKEVAKGINV---------------------RVVPI 157
P L ALI+ PTRELALQV+ HL E+ + + ++ +
Sbjct: 360 PPP--LGALILCPTRELALQVSSHLTEIVRASCIISADDDDDQAEISHKKLLGRPQIAVV 417
Query: 158 VGGMSTEKQERLLKARP---------ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
GGMS +KQ RLL+ R ++++ TPGRLWE+ + + F VLDE
Sbjct: 418 CGGMSEQKQRRLLQGRSRASDRQSGVDIIIATPGRLWEMTRLDDHLAARIKQTRFLVLDE 477
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSN-----EGQSEQTQTCVTVSSLQRKKR------- 256
ADRM++ GHF E++ I++++ T + +GQ Q + S +R+ +
Sbjct: 478 ADRMVQVGHFAEMEHILNLVNRTEARHPVPGKDGQQHQPHHHQSDSESEREVQTHRVKPS 537
Query: 257 ---QTLVFSATIA----LSADFRKKLKHGSLK--LKQSVNGLNSIETLSERAGMR-ANVA 306
QT +FSAT++ ++ R+KLK + K K++ N +++ L R R A
Sbjct: 538 CNMQTFIFSATLSKTLQINLKKRRKLKQLTKKRHCKRNANS-TTLDELVSRIDFRDPTPA 596
Query: 307 IVDLTNVSVLANKLEESFIE 326
++DLT + L ++ +E
Sbjct: 597 VIDLTRAQGMPQGLMQTKLE 616
>gi|226958385|ref|NP_001152974.1| ATP-dependent RNA helicase DDX24 isoform 1 [Mus musculus]
Length = 903
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 121/212 (57%), Gaps = 23/212 (10%)
Query: 102 EKAGKMLEEKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 159
E+AGK+ +E ++ Y P+ L L++TPTRELA+QV H+ VAK + +VG
Sbjct: 410 EQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVG 469
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR 219
GMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GHF
Sbjct: 470 GMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFA 529
Query: 220 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279
EL +++ML N+ Q + RQTLVFSAT+ L ++ H
Sbjct: 530 ELSQLLEML------NDSQYNPS-------------RQTLVFSATLTLVHQAPARILHK- 569
Query: 280 LKLKQSVNGLNSIETLSERAGMRANVAIVDLT 311
K + ++ + ++ L ++ GMR ++DLT
Sbjct: 570 -KHVKKMDKTDKLDLLMQKVGMRGKPKVIDLT 600
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 237 DVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 296
Query: 92 PIMQRLLE 99
P++ +L+
Sbjct: 297 PMIHSVLQ 304
>gi|148686887|gb|EDL18834.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24, isoform CRA_a [Mus
musculus]
Length = 943
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 121/212 (57%), Gaps = 23/212 (10%)
Query: 102 EKAGKMLEEKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 159
E+AGK+ +E ++ Y P+ L L++TPTRELA+QV H+ VAK + +VG
Sbjct: 450 EQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVG 509
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR 219
GMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GHF
Sbjct: 510 GMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFA 569
Query: 220 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279
EL +++ML N+ Q + RQTLVFSAT+ L ++ H
Sbjct: 570 ELSQLLEML------NDSQYNPS-------------RQTLVFSATLTLVHQAPARILHK- 609
Query: 280 LKLKQSVNGLNSIETLSERAGMRANVAIVDLT 311
K + ++ + ++ L ++ GMR ++DLT
Sbjct: 610 -KHVKKMDKTDKLDLLMQKVGMRGKPKVIDLT 640
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 277 DVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 336
Query: 92 PIMQRLLE 99
P++ +L+
Sbjct: 337 PMIHSVLQ 344
>gi|50305485|ref|XP_452702.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660576|sp|Q6CTN7.1|MAK5_KLULA RecName: Full=ATP-dependent RNA helicase MAK5
gi|49641835|emb|CAH01553.1| KLLA0C11253p [Kluyveromyces lactis]
Length = 796
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 173/343 (50%), Gaps = 56/343 (16%)
Query: 6 CGTVVVVSNGPDDAEEELVSEAEISTE------FDAWNE-LRLHPLLMKSIYRLGFKEPT 58
GTVV DD + V + + + W+E + L ++K + LGF PT
Sbjct: 184 AGTVVTEDQTNDDLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPT 243
Query: 59 PIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 118
IQ IP A +G +I+G A TGSGKTLA+G+PI+++L+++ +
Sbjct: 244 EIQLKSIPLAL-KGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSI----------- 291
Query: 119 APKGHLRALIITPTRELALQVTDHLKEVAKGIN----VRVVPIVGGMSTEKQERLLK--A 172
LI TPTRELA QVTDHL++V +N ++ + GG+S +KQER+LK
Sbjct: 292 -------GLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDG 344
Query: 173 RPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 232
++V TPGR EL+ + + VLDEADR++++GHF E + I+ +L
Sbjct: 345 SGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLL---- 400
Query: 233 GSNEGQSEQTQTCV----TVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG 288
G++ + +T + T S QT++FSAT +L D KL S K+ ++ G
Sbjct: 401 ----GKARKIKTSIDGKPTGSGW-----QTMIFSATFSL--DLFTKLDKTSWKILKTAGG 449
Query: 289 LNS-----IETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
N+ + L ++ ++ I+D + ++++ES IE
Sbjct: 450 ENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIE 492
>gi|143454043|sp|Q0INC5.2|RH28_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|125579336|gb|EAZ20482.1| hypothetical protein OsJ_36091 [Oryza sativa Japonica Group]
gi|215706455|dbj|BAG93311.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 802
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 139/254 (54%), Gaps = 48/254 (18%)
Query: 14 NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
+G D + S S +++ EL L L+++ LG+++PTPIQ ACIP A G+
Sbjct: 174 SGVVDPSKFFASSEGASFHANSFLELNLSRPLLRACEALGYQKPTPIQAACIPLAL-TGR 232
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIITP 131
DI G+A TGSGKT AF LP+++RLL + PK +R LI+TP
Sbjct: 233 DICGSAITGSGKTAAFSLPVLERLL-------------------FRPKRVPAIRVLILTP 273
Query: 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191
TRELA QV ++++A+ ++R IVGG+ST+ QE L++ P++VV TPGR+ + +
Sbjct: 274 TRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRNS 333
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251
V L L+ +LDEADR++E G E+Q +I M P
Sbjct: 334 LS--VGLEDLAILILDEADRLLELGFSAEIQELIRMCP---------------------- 369
Query: 252 QRKKRQTLVFSATI 265
++RQT++FSAT+
Sbjct: 370 --RRRQTMLFSATM 381
>gi|224083077|ref|XP_002306942.1| predicted protein [Populus trichocarpa]
gi|222856391|gb|EEE93938.1| predicted protein [Populus trichocarpa]
Length = 744
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 135/244 (55%), Gaps = 48/244 (19%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
+++ EL L L+++ LG+ +PTPIQ ACIP A G+DI G+A TGSGKT AF LP
Sbjct: 136 NSFMELNLSRPLLRACEALGYTKPTPIQAACIPLAL-TGRDICGSAITGSGKTAAFALPT 194
Query: 94 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHL--RALIITPTRELALQVTDHLKEVAKGIN 151
++RLL + PK L R LI+TPTRELA+QV ++++A+ +
Sbjct: 195 LERLL-------------------FRPKRILAIRVLILTPTRELAVQVHSMIEKIAQFTD 235
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+R +VGG+ST+ QE L++ P++VV TPGR+ + + V+L L+ +LDEADR
Sbjct: 236 IRCCLVVGGLSTKVQEASLRSMPDIVVATPGRMIDHLRNSMS--VDLDDLAVLILDEADR 293
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
++E G E+ ++ + P K+RQT++FSAT+ D
Sbjct: 294 LLELGFNAEIHELVRLCP------------------------KRRQTMLFSATMTEEVDM 329
Query: 272 RKKL 275
KL
Sbjct: 330 LIKL 333
>gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa Japonica Group]
gi|113649278|dbj|BAF29790.1| Os12g0481100, partial [Oryza sativa Japonica Group]
Length = 832
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 139/254 (54%), Gaps = 48/254 (18%)
Query: 14 NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
+G D + S S +++ EL L L+++ LG+++PTPIQ ACIP A G+
Sbjct: 204 SGVVDPSKFFASSEGASFHANSFLELNLSRPLLRACEALGYQKPTPIQAACIPLAL-TGR 262
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIITP 131
DI G+A TGSGKT AF LP+++RLL + PK +R LI+TP
Sbjct: 263 DICGSAITGSGKTAAFSLPVLERLL-------------------FRPKRVPAIRVLILTP 303
Query: 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191
TRELA QV ++++A+ ++R IVGG+ST+ QE L++ P++VV TPGR+ + +
Sbjct: 304 TRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRNS 363
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251
V L L+ +LDEADR++E G E+Q +I M P
Sbjct: 364 LS--VGLEDLAILILDEADRLLELGFSAEIQELIRMCP---------------------- 399
Query: 252 QRKKRQTLVFSATI 265
++RQT++FSAT+
Sbjct: 400 --RRRQTMLFSATM 411
>gi|50284995|ref|XP_444926.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661507|sp|Q6FY67.1|MAK5_CANGA RecName: Full=ATP-dependent RNA helicase MAK5
gi|49524228|emb|CAG57819.1| unnamed protein product [Candida glabrata]
Length = 733
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 157/308 (50%), Gaps = 47/308 (15%)
Query: 30 STEFDAWNE-LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
S E W + + L + + LGF E TPIQK IPAA +GKDI+G A TGSGKTLA
Sbjct: 150 SGELPGWTDTVDLSMTTINGLSNLGFTEMTPIQKLSIPAAL-EGKDIMGKASTGSGKTLA 208
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA- 147
+G+PI++++++ ++ L G +I TPTRELA QVT HL+ V
Sbjct: 209 YGIPIIEKMIKSKDN----LRTNG--------------IIFTPTRELAQQVTKHLQNVCS 250
Query: 148 ---KGINVRVVPIVGGMSTEKQERLLK--ARPELVVGTPGRLWELMSGGEKHLVELHTLS 202
K ++ + GG+S +KQERLLK +VV TPGR EL+ E+ + +
Sbjct: 251 MLLKKNPYMILSLTGGLSIQKQERLLKYDGSARIVVATPGRFLELIEKNEELMKRFAKID 310
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262
VLDEADR++++GHF E + I+ L S + + QTL++S
Sbjct: 311 VLVLDEADRLLQDGHFDEFEKILKHLGRIRKSLKNM---------------EYWQTLIYS 355
Query: 263 ATIALSADFRKKLKHGSLKLKQSVNGLNSIET----LSERAGMRANVAIVDLTNVSVLAN 318
AT S D KL + S K K + + +E+ L + ++ ++D ++
Sbjct: 356 AT--FSTDLFDKLANSSWKKKNNSKDESEMESVLKHLMTKINFKSKPMMIDANPEDKISA 413
Query: 319 KLEESFIE 326
+++ES IE
Sbjct: 414 QIKESLIE 421
>gi|34328253|ref|NP_065240.2| ATP-dependent RNA helicase DDX24 isoform 2 [Mus musculus]
gi|341940454|sp|Q9ESV0.2|DDX24_MOUSE RecName: Full=ATP-dependent RNA helicase DDX24; AltName: Full=DEAD
box protein 24
gi|32967660|gb|AAH55048.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Mus musculus]
gi|33244019|gb|AAH55317.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Mus musculus]
gi|148686888|gb|EDL18835.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24, isoform CRA_b [Mus
musculus]
Length = 857
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 121/212 (57%), Gaps = 23/212 (10%)
Query: 102 EKAGKMLEEKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 159
E+AGK+ +E ++ Y P+ L L++TPTRELA+QV H+ VAK + +VG
Sbjct: 364 EQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVG 423
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR 219
GMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GHF
Sbjct: 424 GMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFA 483
Query: 220 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279
EL +++ML N+ Q + RQTLVFSAT+ L ++ H
Sbjct: 484 ELSQLLEML------NDSQYNPS-------------RQTLVFSATLTLVHQAPARILHK- 523
Query: 280 LKLKQSVNGLNSIETLSERAGMRANVAIVDLT 311
K + ++ + ++ L ++ GMR ++DLT
Sbjct: 524 -KHVKKMDKTDKLDLLMQKVGMRGKPKVIDLT 554
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 191 DVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 250
Query: 92 PIMQRLLE 99
P++ +L+
Sbjct: 251 PMIHSVLQ 258
>gi|9931363|gb|AAG02170.1|AF214732_1 ATP-dependent RNA helicase [Mus musculus]
Length = 857
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 121/212 (57%), Gaps = 23/212 (10%)
Query: 102 EKAGKMLEEKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 159
E+AGK+ +E ++ Y P+ L L++TPTRELA+QV H+ VAK + +VG
Sbjct: 364 EQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVG 423
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR 219
GMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GHF
Sbjct: 424 GMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFA 483
Query: 220 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279
EL +++ML N+ Q + RQTLVFSAT+ L ++ H
Sbjct: 484 ELSQLLEML------NDSQYNPS-------------RQTLVFSATLTLVHQAPARILHK- 523
Query: 280 LKLKQSVNGLNSIETLSERAGMRANVAIVDLT 311
K + ++ + ++ L ++ GMR ++DLT
Sbjct: 524 -KHVKKMDKTDKLDLLMQKVGMRGKPKVIDLT 554
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 191 DVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 250
Query: 92 PIMQRLLE 99
P++ +L+
Sbjct: 251 PMIHSVLQ 258
>gi|74141078|dbj|BAE22104.1| unnamed protein product [Mus musculus]
Length = 622
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 121/212 (57%), Gaps = 23/212 (10%)
Query: 102 EKAGKMLEEKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 159
E+AGK+ +E ++ Y P+ L L++TPTRELA+QV H+ VAK + +VG
Sbjct: 364 EQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVG 423
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR 219
GMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GHF
Sbjct: 424 GMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFA 483
Query: 220 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279
EL +++ML N+ Q + RQTLVFSAT+ L ++ H
Sbjct: 484 ELSQLLEML------NDSQYNPS-------------RQTLVFSATLTLVHQAPARILHK- 523
Query: 280 LKLKQSVNGLNSIETLSERAGMRANVAIVDLT 311
K + ++ + ++ L ++ GMR ++DLT
Sbjct: 524 -KHVKKMDKTDKLDLLMQKVGMRGKPKVIDLT 554
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 191 DVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 250
Query: 92 PIMQRLLE 99
P++ +L+
Sbjct: 251 PMIHSVLQ 258
>gi|427783023|gb|JAA56963.1| Putative atp-dependent rna helicase [Rhipicephalus pulchellus]
Length = 467
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 125/231 (54%), Gaps = 50/231 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L+L+ ++ + LG +P+PIQ+ CIPA GKD IG A+TGSGKTLAF LPI+Q
Sbjct: 12 FADLKLNKWIIDQLETLGISKPSPIQENCIPAIL-SGKDCIGCAKTGSGKTLAFALPILQ 70
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L E+ P G + ALI+TPTRELA Q+ D K V K + ++
Sbjct: 71 KLFED-------------------PYG-IFALILTPTRELAFQICDQFKVVGKAVGLKEC 110
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
IVGGM Q ++L P +VV TPGRL + + + L + F VLDEADR++E
Sbjct: 111 VIVGGMDMVTQGQVLAESPHVVVATPGRLADHLESC--NTFTLKRIRFLVLDEADRLLE- 167
Query: 216 GHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
GHF E L++I LP KRQTL+FSATI
Sbjct: 168 GHFNEQLKTIFAALP-------------------------KRQTLLFSATI 193
>gi|447911698|ref|YP_007393110.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
gi|445187407|gb|AGE29049.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
Length = 503
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 134/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+KS+ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP+++
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +R++ L+ L+I PTRELA+Q + L + + VRV
Sbjct: 62 KIDPDRQE--------------------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVQTLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P +RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIISQVP------------------------DQRQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K H +K K+
Sbjct: 195 FMKNPHHVKIKAKE 208
>gi|332016384|gb|EGI57297.1| Putative ATP-dependent RNA helicase DDX49 [Acromyrmex echinatior]
Length = 461
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 142/275 (51%), Gaps = 51/275 (18%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
+ +S E +++L+L+ L+ +G K+PTPIQ+ CIP G+D IG A+TGSGKT
Sbjct: 4 SNMSKEIKHFSDLKLNSWLLAQCESMGLKKPTPIQQNCIPRIL-MGEDCIGCAKTGSGKT 62
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
LAF LPI+Q+L E+ P G + AL++TPTRELA Q+ D +
Sbjct: 63 LAFVLPILQKLCED-------------------PYG-IFALVLTPTRELAFQIADQFTAI 102
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
K IN++ IVGGM Q L RP +VV TPGRL + + + L + F VL
Sbjct: 103 GKAINLKKCVIVGGMDMMVQGLELSKRPHIVVATPGRLADHLDSCDTF--SLQKIKFLVL 160
Query: 207 DEADRMIENGHFR-ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
DEADR++ GHF +L++I LP K++Q L FSAT+
Sbjct: 161 DEADRLL-GGHFDGQLKTIFAALP------------------------KQKQVLFFSATM 195
Query: 266 ALSADFRKKLKHGSLKLKQSVN--GLNSIETLSER 298
+ D K++ + Q + G+ +++ L +R
Sbjct: 196 TDTLDKVKQIASAEVFTWQEEDDFGIATVKELDQR 230
>gi|270005640|gb|EFA02088.1| hypothetical protein TcasGA2_TC007723 [Tribolium castaneum]
Length = 447
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 130/243 (53%), Gaps = 52/243 (21%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++++L+L+P +++ +G + PTPIQ CIP G+D IGAA+TGSGKTLAF LPI+
Sbjct: 5 SFDKLQLNPWIIRQCATIGVRSPTPIQTNCIPPIL-AGRDCIGAAKTGSGKTLAFALPIL 63
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q+L E+ P G + ALI+TPTRELA Q+ D + K +N+R
Sbjct: 64 QKLCED-------------------PYG-IFALILTPTRELAFQIADQFAVIGKVMNLRH 103
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
IVGGM Q + L +P +VV TPGRL + + + + L F VLDEADR++
Sbjct: 104 CVIVGGMDMVVQGKDLARKPHIVVATPGRLADHLESC--NTFNFNKLRFLVLDEADRLL- 160
Query: 215 NGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
GHF E +++I LP K+RQ L FSATI D +
Sbjct: 161 GGHFDEQIKTIFQALP------------------------KERQNLFFSATI---TDTLE 193
Query: 274 KLK 276
KLK
Sbjct: 194 KLK 196
>gi|410962873|ref|XP_003987993.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Felis catus]
Length = 856
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 123/229 (53%), Gaps = 22/229 (9%)
Query: 98 LEEREKAGKMLEEKGEEAE-KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
L+E + G E G+ A K PK L L++TPTRELA+QV H+ VAK ++
Sbjct: 355 LDEEQTGGLKQELGGKTATCKAHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAI 414
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L +PE+V+ TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 415 LVGGMSTQKQQRMLNRQPEIVIATPGRLWELIKEKHPHLSNLKQLRCLVVDEADRMVEKG 474
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML S KRQTL+FSAT+ L ++
Sbjct: 475 HFAELSQLLEML-------------------SDSQYNPKRQTLIFSATLTLVHQAPARIL 515
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 516 HK--KHTKKIDKTAKLDLLVQKIGMRGKPKVIDLTRNEATVETLTETKI 562
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +P++
Sbjct: 191 AWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMI 250
Query: 95 QRLLE 99
+L+
Sbjct: 251 HAVLQ 255
>gi|313885567|ref|ZP_07819317.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619297|gb|EFR30736.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
Length = 526
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 133/234 (56%), Gaps = 49/234 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++L L L++++ LGF+EPTPIQ+ IP QG+D++G A+TG+GKT AFGLP++Q
Sbjct: 3 FSDLNLKTELIETLDELGFEEPTPIQQQAIPFVL-QGRDLVGQAQTGTGKTAAFGLPMLQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
G + + A L+ALII PTRELA+QV D L ++KG+ +V
Sbjct: 62 ----------------GLDTDHRA----LQALIIAPTRELAIQVHDELYSLSKGLKTKVY 101
Query: 156 PIVGGMSTEKQ-ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG S KQ +R+ K +P+++VGTPGRL +LM + +++ L ++DEAD M+
Sbjct: 102 AVYGGYSIGKQIDRIQKLKPQVIVGTPGRLLDLM---RRQIIDTSYLKTLIMDEADEMLN 158
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
G ++++I++ P + RQTL+FSAT+ S
Sbjct: 159 MGFIEDIKAIVEQTPSS------------------------RQTLMFSATMPKS 188
>gi|365156794|ref|ZP_09353090.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
gi|363626851|gb|EHL77816.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
Length = 473
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 131/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+KSI +LGF+E TPIQ A IP + GKD+IG A+TG+GKT AFG+P+M+
Sbjct: 4 FVELGLSPALLKSIDQLGFEEATPIQAATIPKSL-DGKDLIGQAQTGTGKTAAFGIPLME 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + H++ +II PTRELA+QV++ L ++ VR++
Sbjct: 63 KIDTKNH--------------------HIQGMIIAPTRELAIQVSEELYKIGYHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG ++Q R LK +P ++VGTPGR+ + ++ L LHTL VLDEAD M+
Sbjct: 103 AVYGGQDIQRQIRALKKQPHVIVGTPGRILDHINRQTLKLDHLHTL---VLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++++I+ +P K+RQTL+FSAT+
Sbjct: 160 GFIQDIETILSHMP------------------------KERQTLLFSATM 185
>gi|310641357|ref|YP_003946115.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|386040399|ref|YP_005959353.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
polymyxa SC2]
gi|343096437|emb|CCC84646.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
Length = 525
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 142/254 (55%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E L P ++++I LGF+E TPIQ IP A QGKD+IG A+TG+GKT AFG+P++
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQSKSIPIAL-QGKDMIGQAQTGTGKTAAFGIPMIN 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + EK +RALI+ PTRELA+QV + ++++++ +R +
Sbjct: 63 KISKNDEK--------------------IRALIMAPTRELAIQVAEEIEKLSRFKGLRTL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK +P++++GTPGRL + ++ + ++L ++ VLDEAD M++
Sbjct: 103 PIYGGQDIVRQIRALKKKPQIIIGTPGRLLDHIN---RKTIKLEDVNTVVLDEADEMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++QSI+ +P +RQT++FSAT+ L+
Sbjct: 160 GFMEDIQSILKQVP------------------------DERQTMLFSATMPPNIKRLAEQ 195
Query: 271 FRKKLKHGSLKLKQ 284
F K +H S+ KQ
Sbjct: 196 FLKDPEHVSVIPKQ 209
>gi|291413819|ref|XP_002723168.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Oryctolagus
cuniculus]
Length = 848
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 117/216 (54%), Gaps = 21/216 (9%)
Query: 110 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL 169
E G A + P L L++TPTRELA+QV H+ VA+ ++ +VGGMST+KQ+R+
Sbjct: 364 EGGAAAWEAPPARPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRM 423
Query: 170 LKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
L PE+V+ TPGRLWEL+ HL L L VLDEADRM+E GHF EL +++ML
Sbjct: 424 LNRHPEIVIATPGRLWELIKERHSHLSNLRQLRCLVLDEADRMVEKGHFAELSQLLEML- 482
Query: 230 MTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGL 289
N+ Q +RQTLVFSAT+ L +L H K + ++
Sbjct: 483 -----NDSQYN-------------PQRQTLVFSATLTLVHQLPARLLHK--KHTKKMDKT 522
Query: 290 NSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
++ L ++ GMR ++DLT L E+ I
Sbjct: 523 AKLDLLVQKVGMRGKPKVIDLTRNEATVETLTETKI 558
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
P A+ L + + AW +L + +++++ LGF PTPIQ + A DI
Sbjct: 170 PKKAKTWLPEVRDQQADVSAWKDLFVPTPVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 229
Query: 76 IGAAETGSGKTLAFGLPIMQRLLE 99
+GAAETGSGKTLAF +P++ +L+
Sbjct: 230 LGAAETGSGKTLAFAIPMIHAVLQ 253
>gi|301607357|ref|XP_002933278.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Xenopus
(Silurana) tropicalis]
Length = 817
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/370 (29%), Positives = 165/370 (44%), Gaps = 87/370 (23%)
Query: 19 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
+E L + + + + AW L + +++K++ LGF PTPIQ +P+A DI+GA
Sbjct: 197 SENALANTSSKNVDVSAWKNLYVPQVVLKALSYLGFACPTPIQALALPSAIRDKMDILGA 256
Query: 79 AETGSGKTLAFGLPIMQRLLE--EREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
AETGSGKTLAF +P++ +LE +R++ G +GE EK + + E
Sbjct: 257 AETGSGKTLAFAIPMIHSILEWQKRQEYGAA---EGETEEKPTTSDGKNEMDVAEKEEQD 313
Query: 137 L--------QVTDHLKEVAKG--------INVRVVP------------------------ 156
+ QV D+++ ++ INV VP
Sbjct: 314 MSENEEDVEQVDDNVEPLSAACINVENIDINVNAVPSSKTGTWDKERPLLGLVVTPTREL 373
Query: 157 ---------------------IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
+VGGM+ +KQ+RLL RPE+V+ TPGRLWEL+ HL
Sbjct: 374 AVQVKHHIDAVAKFTGIRTAIVVGGMAPQKQQRLLDRRPEIVIATPGRLWELIRERHPHL 433
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK 255
L L V+DEADRM+E GH+ EL + ++L + ++ K
Sbjct: 434 RNLRQLRCLVIDEADRMVEKGHYAELSQLFELLSEVHYNS-------------------K 474
Query: 256 RQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSV 315
RQT VFSAT+ L +L K + + +L E+ GM+ ++DLT
Sbjct: 475 RQTFVFSATLTLIHQAPTRLLQKKKYKKIDKDS--KLVSLMEKIGMKDKPKVIDLTRKQA 532
Query: 316 LANKLEESFI 325
L E+ I
Sbjct: 533 TVETLTETRI 542
>gi|323485816|ref|ZP_08091151.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
gi|323400804|gb|EGA93167.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
Length = 458
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 132/230 (57%), Gaps = 42/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L+L PLL+K++ G+ P+PIQ+ IP G+D++G A+TG+GKT AF LPI+Q
Sbjct: 15 FKDLQLSPLLLKALEEKGYVSPSPIQEKAIPHVL-AGRDVLGCAQTGTGKTAAFALPIIQ 73
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L++ EK KY+ K +R+LI+TPTR+LALQ+ ++ KE +VR
Sbjct: 74 NLMKPSEK-------------KYS-KRVIRSLILTPTRKLALQIAENFKEYGSRTSVRCA 119
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S Q L+ +++V TPGRL +L+ G V+L + FVLDEADRM++
Sbjct: 120 VIFGGVSANPQIEELRRGIDILVATPGRLNDLVGQG---FVDLAYVEIFVLDEADRMLDM 176
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II +LP+ ++QTL+FSAT+
Sbjct: 177 GFIHDVKKIISLLPV------------------------RKQTLLFSATM 202
>gi|228474931|ref|ZP_04059660.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
gi|314935968|ref|ZP_07843318.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
hominis subsp. hominis C80]
gi|418618997|ref|ZP_13181840.1| DEAD/DEAH box helicase [Staphylococcus hominis VCU122]
gi|228271163|gb|EEK12543.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
gi|313655974|gb|EFS19716.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
hominis subsp. hominis C80]
gi|374825858|gb|EHR89777.1| DEAD/DEAH box helicase [Staphylococcus hominis VCU122]
Length = 503
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 132/230 (57%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + +K++ +GFKEPTPIQK IP +GKDI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDKTVKTLEEMGFKEPTPIQKESIPYTL-EGKDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K ++ALI+ PTRELA+QV + L+E ++G N++VV
Sbjct: 62 --------------------EKVVGKSGVQALILAPTRELAMQVAEQLREFSRGQNIQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM ++Q + LK P++VVGTPGR+ + ++ ++HTL +LDEAD M+
Sbjct: 102 TVFGGMPIDRQIKALKRGPQIVVGTPGRVIDHLNRRTLKTNDIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|198427069|ref|XP_002129152.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
[Ciona intestinalis]
Length = 452
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 140/264 (53%), Gaps = 54/264 (20%)
Query: 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
+L L+ +++ + LGF +PTPIQ CIP QGKD G ++TGSGKT AF LP++Q+L
Sbjct: 9 DLGLNEWIIQHLGNLGFNKPTPIQYNCIPPIL-QGKDCFGCSKTGSGKTAAFALPVLQKL 67
Query: 98 LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
E+ P G + L++TPTRELA Q+++ + K IN+R I
Sbjct: 68 SED-------------------PYG-IFCLVLTPTRELAYQISEQFTLIGKPINIRTSVI 107
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE--N 215
VGGM +Q L+ +P +V+ TPGRL +L+ E + + F VLDEADR+++ +
Sbjct: 108 VGGMDIIQQAYELQKKPHIVIATPGRLADLLRSNE------NNVKFLVLDEADRLLDKLD 161
Query: 216 GHF-RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274
G F +L I LP K+RQTL+FSAT+ + + K+
Sbjct: 162 GDFTNDLNLIFSSLP------------------------KERQTLLFSATLTDTLNEVKE 197
Query: 275 LKHGSLKLKQSVNGLNSIETLSER 298
L S QS N +++++ L +R
Sbjct: 198 LSTKSPFFWQSDNKVSTVDNLDQR 221
>gi|85860692|ref|YP_462894.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
gi|85723783|gb|ABC78726.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
Length = 423
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 134/252 (53%), Gaps = 52/252 (20%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ + LHP + I LG+K PTPIQ IPA QG+D++G A+TG+GKT AF LPI+
Sbjct: 2 SFTQFNLHPQINAGIEALGYKTPTPIQMQSIPAII-QGRDVMGLAQTGTGKTAAFALPIL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
QRL+ GKM+ RALI+ PTRELA Q+ + + E+++ ++
Sbjct: 61 QRLMN---GPGKMV----------------RALIVAPTRELAEQINESINEMSRSTKLKS 101
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V + GG+S Q L+ E++V PGRL +L++ G + +L + FVLDEADRM +
Sbjct: 102 VALYGGVSKNPQIEKLRQGAEIIVACPGRLLDLVAQG---VADLSGIEVFVLDEADRMFD 158
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR-- 272
G E++ I LP +KRQTL+FSAT + AD R
Sbjct: 159 MGFLPEIRKITKQLP------------------------EKRQTLLFSAT--MPADIRSL 192
Query: 273 -KKLKHGSLKLK 283
K + H L ++
Sbjct: 193 AKDILHDPLTIR 204
>gi|432096748|gb|ELK27327.1| ATP-dependent RNA helicase DDX24 [Myotis davidii]
Length = 790
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 114/209 (54%), Gaps = 21/209 (10%)
Query: 117 KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPEL 176
K PK L L++TPTRELA+QV H+ VAK ++ +VGGMST+KQ+R+L +PE+
Sbjct: 367 KSHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLHRQPEI 426
Query: 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNE 236
V+ TPGRLWEL+ HL L L V+DEADRM+E GHF EL +++ML
Sbjct: 427 VIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEML-------- 478
Query: 237 GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLS 296
S KRQTLVFSAT+ L ++ H K + ++ ++ L
Sbjct: 479 -----------SDSQYNPKRQTLVFSATLTLVHQAPARVLHK--KHTKKIDKTAKLDILM 525
Query: 297 ERAGMRANVAIVDLTNVSVLANKLEESFI 325
++ GMR ++DLT L E+ I
Sbjct: 526 QKIGMRGKPKVIDLTRNEATVETLTETKI 554
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
P A+ L + + AW +L + +++++ LGF PTPIQ + A DI
Sbjct: 173 PKKAKTWLPEVRDQKADVSAWKDLFVPRPVLRALSALGFSAPTPIQALTLAPAIRDKLDI 232
Query: 76 IGAAETGSGKTLAFGLPIMQRLLE 99
+GAAETGSGKTLAF +P++ +L+
Sbjct: 233 LGAAETGSGKTLAFAIPMIHSVLQ 256
>gi|375308018|ref|ZP_09773305.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375080349|gb|EHS58570.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 526
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 141/254 (55%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E L P ++++I LGF+E TPIQ IP A QGKD+IG A+TG+GKT AFG+P++
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQAKSIPIAL-QGKDMIGQAQTGTGKTAAFGIPLIS 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ EK +RALI+ PTRELA+QV + ++++++ +R +
Sbjct: 63 KIARNDEK--------------------IRALIMAPTRELAIQVAEEIEKLSRFKGLRTL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK +P++++GTPGRL + ++ + ++L ++ VLDEAD M++
Sbjct: 103 PIYGGQDIVRQIRALKKKPQIIIGTPGRLLDHIN---RKTIKLEDVNTVVLDEADEMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++QSI+ +P +RQT++FSAT+ L+
Sbjct: 160 GFMEDIQSILKQVP------------------------DERQTMLFSATMPPNIKRLAEQ 195
Query: 271 FRKKLKHGSLKLKQ 284
F K +H S+ KQ
Sbjct: 196 FLKDPEHVSVIPKQ 209
>gi|109084685|ref|XP_001097132.1| PREDICTED: ATP-dependent RNA helicase DDX24 isoform 5 [Macaca
mulatta]
Length = 856
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 125/229 (54%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+
Sbjct: 360 DKEQIGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGXXXXX 418
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 419 LVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 478
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 479 HFAELSQLLEML------NDSQYN-------------PKRQTLVFSATLTLVHQAPARIL 519
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 520 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 566
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 188 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTLAFAI 247
Query: 92 PIMQRLLEEREK 103
P++ +L+ +++
Sbjct: 248 PVIHAVLQWQKR 259
>gi|431208676|ref|ZP_19500889.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
gi|430570682|gb|ELB09622.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
Length = 503
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 133/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+KS+ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP+++
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +R + L+ L+I PTRELA+Q + L + + VRV
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVQTLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P +RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIISQVP------------------------DQRQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K H +K K+
Sbjct: 195 FMKNPHHVKIKAKE 208
>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
Length = 503
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 133/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+KS+ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP+++
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +R + L+ L+I PTRELA+Q + L + + VRV
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVQTLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P +RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIISQVP------------------------DQRQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K H +K K+
Sbjct: 195 FMKNPHHVKIKAKE 208
>gi|344273652|ref|XP_003408633.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Loxodonta
africana]
Length = 858
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 118/218 (54%), Gaps = 22/218 (10%)
Query: 109 EEKGEEAE-KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE 167
E GE A K P+ L L++TPTRELA+QV H+ VAK +R +VGGMST+KQE
Sbjct: 371 ESNGEIATCKEHPRHPLLGLVLTPTRELAVQVKQHIDAVAKFTGIRTAILVGGMSTQKQE 430
Query: 168 RLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 227
R+L +PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GHF EL +++M
Sbjct: 431 RMLNRQPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVVDEADRMVEKGHFDELSQLLEM 490
Query: 228 LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVN 287
L S KRQTLVFSAT+ L ++ H K + ++
Sbjct: 491 L-------------------SDSQYNPKRQTLVFSATLTLVHQAPTRILHK--KHTKKMD 529
Query: 288 GLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
++ L ++ GMR ++DLT L E+ I
Sbjct: 530 KTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLIETKI 567
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 186 DVSAWKNLFVPEGVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 245
Query: 92 PIMQRLLEEREK 103
P++ +L+ ++K
Sbjct: 246 PMIHAVLQWQKK 257
>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|406579294|ref|ZP_11054526.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|406581588|ref|ZP_11056725.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|406584027|ref|ZP_11059065.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|406589825|ref|ZP_11064245.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410938072|ref|ZP_11369930.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|424789110|ref|ZP_18215819.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|424953765|ref|ZP_18368708.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|424962400|ref|ZP_18376756.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|424963599|ref|ZP_18377803.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|424970725|ref|ZP_18384213.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|424978089|ref|ZP_18391038.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|425038208|ref|ZP_18442830.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|425058609|ref|ZP_18461987.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|425060636|ref|ZP_18463922.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|427397059|ref|ZP_18889685.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430820898|ref|ZP_19439518.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430823396|ref|ZP_19441967.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430826317|ref|ZP_19444503.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430828899|ref|ZP_19447010.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430834757|ref|ZP_19452759.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430836494|ref|ZP_19454473.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430839412|ref|ZP_19457353.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430843175|ref|ZP_19461076.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430850821|ref|ZP_19468578.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430853175|ref|ZP_19470905.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430858894|ref|ZP_19476513.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430861435|ref|ZP_19478942.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430866428|ref|ZP_19481705.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430892938|ref|ZP_19484559.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430952632|ref|ZP_19486438.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|431000766|ref|ZP_19488247.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|431234137|ref|ZP_19502906.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|431256501|ref|ZP_19504856.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|431303424|ref|ZP_19508271.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|431380394|ref|ZP_19510775.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|431441111|ref|ZP_19513326.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|431506774|ref|ZP_19515600.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|431725207|ref|ZP_19525416.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|431744090|ref|ZP_19532962.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|431747114|ref|ZP_19535916.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|431760196|ref|ZP_19548798.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|431765027|ref|ZP_19553551.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|402922578|gb|EJX42943.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|402938304|gb|EJX57320.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|402940682|gb|EJX59477.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|402948694|gb|EJX66809.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|402960765|gb|EJX77866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|402963120|gb|EJX80012.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|403019904|gb|EJY32478.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|403038013|gb|EJY49253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|403042418|gb|EJY53373.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|404455599|gb|EKA02443.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|404459354|gb|EKA05720.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|404464924|gb|EKA10437.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|404470265|gb|EKA14916.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410733711|gb|EKQ75634.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|425722385|gb|EKU85280.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430439035|gb|ELA49418.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430442109|gb|ELA52157.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430445197|gb|ELA54971.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430482561|gb|ELA59676.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430484826|gb|ELA61773.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430488294|gb|ELA64976.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430490870|gb|ELA67366.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430497924|gb|ELA73941.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430535180|gb|ELA75603.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430540997|gb|ELA81174.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430544740|gb|ELA84762.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430549900|gb|ELA89710.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430551656|gb|ELA91407.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430555404|gb|ELA94942.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430557231|gb|ELA96699.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|430562425|gb|ELB01657.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|430573163|gb|ELB11993.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|430577603|gb|ELB16190.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|430580065|gb|ELB18545.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|430582262|gb|ELB20689.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|430586467|gb|ELB24719.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|430587161|gb|ELB25394.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|430595854|gb|ELB33732.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|430605718|gb|ELB43100.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|430607222|gb|ELB44549.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|430624005|gb|ELB60656.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|430629510|gb|ELB65910.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
Length = 503
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 133/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+KS+ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP+++
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +R + L+ L+I PTRELA+Q + L + + VRV
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVQTLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P +RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIISQVP------------------------DQRQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K H +K K+
Sbjct: 195 FMKNPHHVKIKAKE 208
>gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15]
gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430842364|ref|ZP_19460279.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|431081588|ref|ZP_19495678.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|431118220|ref|ZP_19498174.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|431592214|ref|ZP_19521450.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|431738949|ref|ZP_19527889.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|431740772|ref|ZP_19529683.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15]
gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430493445|gb|ELA69748.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|430565520|gb|ELB04666.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|430568177|gb|ELB07234.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|430591839|gb|ELB29866.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|430596492|gb|ELB34316.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|430602855|gb|ELB40405.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
Length = 503
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 134/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+KS+ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP+++
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQAETIPLAL-AGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +R + L+ L+I PTRELA+Q + L + + VRV
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVQTLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P ++RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIISQVP------------------------EQRQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K H +K K+
Sbjct: 195 FMKSPHHVKIKAKE 208
>gi|426248528|ref|XP_004018015.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Ovis aries]
Length = 852
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 139/266 (52%), Gaps = 33/266 (12%)
Query: 67 AAAHQGKDIIGAAETGSG-KTLAFGLPIMQRLLEEREK-----AGKMLEEKGEEAEKYAP 120
A + QG+D G + G G +L PI + ++ EK GK+ ++G P
Sbjct: 321 ACSDQGRD--GDVDAGEGPSSLMREKPIPNQEGDQVEKHDGEQTGKV--KRGLGGSAVPP 376
Query: 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGT 180
+ L L++TPTRELA+QV H+ VAK ++ +VGGMST+KQ+R+L +PE+V+ T
Sbjct: 377 RRPLLGLVLTPTRELAVQVKQHVDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVIAT 436
Query: 181 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSE 240
PGRLWEL+ HL L L V+DEADRM+E GHF EL +++ML
Sbjct: 437 PGRLWELVKEKHPHLSNLQQLRCLVIDEADRMVEKGHFAELSQLLEML------------ 484
Query: 241 QTQTCVTVSSLQ-RKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERA 299
S Q KRQTLVFSAT+ L ++ H K + ++ ++ L ++
Sbjct: 485 --------SDCQYNPKRQTLVFSATLTLVHQAPARILHK--KHAKKIDKTAKLDLLMQKI 534
Query: 300 GMRANVAIVDLTNVSVLANKLEESFI 325
GMR ++DLT L E+ I
Sbjct: 535 GMRGKPKVIDLTRKEATVETLTETKI 560
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
P A+ + + + AW +L + +++++ LGF PTPIQ + A DI
Sbjct: 173 PKKAKTWMPETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 232
Query: 76 IGAAETGSGKTLAFGLPIMQRLL 98
+GAAETGSGKTLAF +P++ +L
Sbjct: 233 LGAAETGSGKTLAFAIPMIDAVL 255
>gi|390456495|ref|ZP_10242023.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus peoriae
KCTC 3763]
Length = 526
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 142/254 (55%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E L P ++++I LGF+E TPIQ IP A QGKD+IG A+TG+GKT AFG+P++
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQAISIPIAL-QGKDMIGQAQTGTGKTAAFGIPLIS 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + EK +RALI+ PTRELA+QV + ++++++ +R +
Sbjct: 63 KISKNDEK--------------------IRALIMAPTRELAIQVAEEIEKLSRFKGLRTL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK +P++++GTPGRL + ++ + ++L ++ VLDEAD M++
Sbjct: 103 PIYGGQDIVRQIRALKKKPQIIIGTPGRLLDHIN---RKTIKLEDVNTVVLDEADEMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++QSI+ +P +RQT++FSAT+ L+
Sbjct: 160 GFMEDIQSILKQVP------------------------DERQTMLFSATMPPNIKRLAEQ 195
Query: 271 FRKKLKHGSLKLKQ 284
F K +H S+ KQ
Sbjct: 196 FLKDPEHVSVIPKQ 209
>gi|195437654|ref|XP_002066755.1| GK24389 [Drosophila willistoni]
gi|194162840|gb|EDW77741.1| GK24389 [Drosophila willistoni]
Length = 808
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 147/238 (61%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +WNE P ++ I R+G+KEPTPIQ+ IP Q +DIIG AETGSGKTLA
Sbjct: 375 IPNPIRSWNESGFPPEIIDIIDRVGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLA 433
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ + + K+ E+ E+ ++ P A+I+ PTRELA Q+ + + +
Sbjct: 434 FLIPLLSWI----QSLPKI--ERLEDVDQ-GP----YAIIMAPTRELAQQIEEETTKFGQ 482
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VLDE
Sbjct: 483 PLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVLDE 539
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATI 265
ADRMI+ G ++Q I++ +P+TN + + + ++ + + +KK RQT++F+AT+
Sbjct: 540 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDESKLMENFYTKKKYRQTVMFTATM 597
>gi|297298507|ref|XP_002805221.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Macaca mulatta]
Length = 770
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 125/229 (54%), Gaps = 25/229 (10%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+
Sbjct: 274 DKEQIGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGXXXXX 332
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 333 LVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 392
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276
HF EL +++ML N+ Q KRQTLVFSAT+ L ++
Sbjct: 393 HFAELSQLLEML------NDSQYN-------------PKRQTLVFSATLTLVHQAPARIL 433
Query: 277 HGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
H K + ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 434 HK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKI 480
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 23/26 (88%)
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLE 99
DI+GAAETGSGKTLAF +P++ +L+
Sbjct: 144 DILGAAETGSGKTLAFAIPVIHAVLQ 169
>gi|366996959|ref|XP_003678242.1| hypothetical protein NCAS_0I02320 [Naumovozyma castellii CBS 4309]
gi|342304113|emb|CCC71900.1| hypothetical protein NCAS_0I02320 [Naumovozyma castellii CBS 4309]
Length = 731
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 161/309 (52%), Gaps = 45/309 (14%)
Query: 30 STEFDAWNEL-RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
S + W +L +M+ + LGF +PT IQ IP A + +DI+G A TGSGKTLA
Sbjct: 147 SVDLPDWTKLATFSTTIMQGLQSLGFTKPTEIQAKAIPFAL-KNEDIMGKASTGSGKTLA 205
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
+G+PI++ L++ G ++ K ALI TPTRELA QVT HL+ ++K
Sbjct: 206 YGIPILENLIKTF----------GNDSNKPI------ALIFTPTRELAQQVTKHLQNISK 249
Query: 149 ----GINVRVVPIVGGMSTEKQERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLS 202
++ + GG+S +KQERLLK ++V+ TPGR EL+ + + +
Sbjct: 250 LFLKNSQYSILSLTGGLSIQKQERLLKYDNSGKIVIATPGRFLELLEKNNELVERFAQID 309
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262
VLDEADR++++GHF E + I+ L GQ + L+ QT+++S
Sbjct: 310 TLVLDEADRLLQDGHFDEFEKILKYL--------GQKRKEM------KLKNTYWQTMIYS 355
Query: 263 ATIALSADFRKKLKHGSLKLKQSVNGLNS-IET----LSERAGMRANVAIVDLTNVSVLA 317
AT S D KL + S K + V +S +ET L + ++ ++D+ ++
Sbjct: 356 AT--FSIDLFDKLANSSWKSNKKVKQYDSEMETVLHHLMNKIHFKSKPILIDMNPNQKIS 413
Query: 318 NKLEESFIE 326
++++ES IE
Sbjct: 414 SQIKESLIE 422
>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|383327538|ref|YP_005353422.1| DEAD/DEAH box helicase [Enterococcus faecium Aus0004]
gi|389867363|ref|YP_006374786.1| DEAD/DEAH box helicase [Enterococcus faecium DO]
gi|415892439|ref|ZP_11549927.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|416131873|ref|ZP_11597781.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|424795449|ref|ZP_18221304.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|424819380|ref|ZP_18244487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|424856321|ref|ZP_18280560.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|424949231|ref|ZP_18364921.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|424956289|ref|ZP_18371077.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|424967919|ref|ZP_18381589.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|424976047|ref|ZP_18389165.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|424981969|ref|ZP_18394659.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|424984734|ref|ZP_18397253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|424987723|ref|ZP_18400084.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|424990961|ref|ZP_18403147.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|424995504|ref|ZP_18407380.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|424997413|ref|ZP_18409175.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|425000503|ref|ZP_18412062.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|425003235|ref|ZP_18414612.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|425006604|ref|ZP_18417774.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|425011167|ref|ZP_18422079.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|425013771|ref|ZP_18424487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|425017560|ref|ZP_18428061.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|425022464|ref|ZP_18432645.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|425030171|ref|ZP_18435374.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|425033448|ref|ZP_18438416.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|425034930|ref|ZP_18439786.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|425040930|ref|ZP_18445364.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|425044373|ref|ZP_18448536.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|425047569|ref|ZP_18451517.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|425053412|ref|ZP_18456957.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|430831942|ref|ZP_19449990.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430847435|ref|ZP_19465272.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430855628|ref|ZP_19473336.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|431544298|ref|ZP_19518594.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|431749300|ref|ZP_19538042.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|431755816|ref|ZP_19544461.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|431767952|ref|ZP_19556395.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|431769544|ref|ZP_19557952.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|431773402|ref|ZP_19561727.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|431776500|ref|ZP_19564761.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|431779582|ref|ZP_19567775.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|431782613|ref|ZP_19570746.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|431784440|ref|ZP_19572479.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|364093335|gb|EHM35615.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|364093511|gb|EHM35776.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|378937232|gb|AFC62304.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium Aus0004]
gi|388532612|gb|AFK57804.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium DO]
gi|402924387|gb|EJX44599.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|402926241|gb|EJX46293.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|402930201|gb|EJX49880.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|402934931|gb|EJX54225.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|402946393|gb|EJX64674.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|402952005|gb|EJX69866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|402953338|gb|EJX71063.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|402962168|gb|EJX79137.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|402967955|gb|EJX84466.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|402973745|gb|EJX89845.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|402977156|gb|EJX92995.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|402978215|gb|EJX93973.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|402986313|gb|EJY01444.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|402988977|gb|EJY03941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|402992431|gb|EJY07139.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|402996952|gb|EJY11308.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|402997720|gb|EJY12029.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|403000335|gb|EJY14462.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|403002697|gb|EJY16644.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|403004081|gb|EJY17911.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|403004113|gb|EJY17941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|403009946|gb|EJY23359.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|403018997|gb|EJY31633.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|403027273|gb|EJY39167.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|403029941|gb|EJY41662.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|403030418|gb|EJY42102.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|403033364|gb|EJY44870.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|430480583|gb|ELA57757.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430537055|gb|ELA77408.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430546683|gb|ELA86626.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|430592410|gb|ELB30425.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|430611728|gb|ELB48804.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|430616431|gb|ELB53345.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|430630040|gb|ELB66417.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|430636649|gb|ELB72713.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|430636858|gb|ELB72912.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|430640819|gb|ELB76647.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|430641683|gb|ELB77478.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|430647250|gb|ELB82698.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|430649535|gb|ELB84911.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
Length = 503
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 133/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+KS+ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP+++
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQAETIPLAL-AGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +R + L+ L+I PTRELA+Q + L + + VRV
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVQTLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P +RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIISQVP------------------------DQRQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K H +K K+
Sbjct: 195 FMKNPHHVKIKAKE 208
>gi|425055862|ref|ZP_18459326.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 505]
gi|403033019|gb|EJY44552.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 505]
Length = 503
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 133/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+KS+ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP+++
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQAETIPLAL-AGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +R + L+ L+I PTRELA+Q + L + + VRV
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVQTLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P +RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIISQVP------------------------DQRQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K H +K K+
Sbjct: 195 FMKSPHHVKIKAKE 208
>gi|340751823|ref|ZP_08688633.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
gi|229420786|gb|EEO35833.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
Length = 545
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 114/191 (59%), Gaps = 24/191 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L +K++ + G+++PTPIQ IPA + KDIIG A+TG+GKT AF LPI+
Sbjct: 7 FRELGLSEKTLKALAKKGYEQPTPIQALTIPALLNGDKDIIGQAQTGTGKTAAFSLPIL- 65
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + P ++A+++ PTRELALQV + + +A G +R+
Sbjct: 66 --------------------ENFEPSKVIQAIVLAPTRELALQVAEEMNSLAHGKKIRIT 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S E Q R LK +++VGTPGR+ +LM E+ L++L L +F+LDEAD M+
Sbjct: 106 PVYGGQSIEFQIRQLKKGTDIIVGTPGRVIDLM---ERKLIKLQDLKYFILDEADEMLNM 162
Query: 216 GHFRELQSIID 226
G +++ I++
Sbjct: 163 GFVEDIEKILE 173
>gi|424869804|ref|ZP_18293485.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
gi|402935190|gb|EJX54460.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
Length = 501
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 133/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+KS+ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP+++
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +R + L+ L+I PTRELA+Q + L + + VRV
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVQTLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P +RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIISQVP------------------------DQRQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K H +K K+
Sbjct: 195 FMKNPHHVKIKAKE 208
>gi|403218070|emb|CCK72562.1| hypothetical protein KNAG_0K01980 [Kazachstania naganishii CBS
8797]
Length = 721
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 157/313 (50%), Gaps = 44/313 (14%)
Query: 24 VSEAEISTEFDAWNEL-RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
V+ +E+ E W L ++ + +LG+ +PT IQ IP A +G DI+G A TG
Sbjct: 133 VNFSEVEVELPDWQALGDFSMTTLQGLSKLGYTKPTEIQSKTIPLAL-EGHDIMGKASTG 191
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142
SGKTLA+G+PI++ L++ ++ A + ALI TPTRELA QVT H
Sbjct: 192 SGKTLAYGIPILENLIKGKDSARPV------------------ALIFTPTRELASQVTSH 233
Query: 143 LKEVAKGI-----NVRVVPIVGGMSTEKQERLLK--ARPELVVGTPGRLWELMSGGEKHL 195
L + + I ++ + GG+S +KQER+LK ++++ TPGR EL+ +
Sbjct: 234 LTNLGESIFTGRNKFAIMSLTGGLSIQKQERVLKYDGSGQIIIATPGRFLELLEKRSDLV 293
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK 255
+ VLDEADR++++GHF E I+ +L EG +R
Sbjct: 294 ARFAQIETLVLDEADRLLQDGHFDEFTKILKLLSQARREKEG--------------KRSH 339
Query: 256 RQTLVFSATIALSADFRKKLKHGS-LKLKQSVNGLNSI-ETLSERAGMRANVAIVDLTNV 313
QTL+FSAT +L F K +G LK+S N L + + L + + I+D
Sbjct: 340 WQTLIFSATFSLDL-FNKLASNGQGHTLKESDNELEEVLKQLMTKIHFKERPTIIDANPF 398
Query: 314 SVLANKLEESFIE 326
+ +++E+ IE
Sbjct: 399 DKVNMQVKEALIE 411
>gi|329926082|ref|ZP_08280693.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
gi|328939480|gb|EGG35833.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
Length = 506
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 133/230 (57%), Gaps = 42/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L + P+++K++ + +K PTPIQ IPA G+D++G A+TG+GKT AF +P++Q
Sbjct: 3 FEDLNISPVILKALAKENYKAPTPIQAQAIPAVL-AGRDLLGCAQTGTGKTAAFSVPMIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L ++ K G +RAL+++PTRELALQ++D++K ++ +R
Sbjct: 62 LLNQQPPKPGMGR--------------RIRALVLSPTRELALQISDNVKAYSQFTKLRST 107
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
IVGG+S + QER L+ ++++ TPGRL +LM+ +KH V+L + VLDEADRM++
Sbjct: 108 AIVGGVSQKTQERALQQGADILIATPGRLLDLMN--QKH-VDLQHVEILVLDEADRMLDM 164
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II +P K+QTL FSAT+
Sbjct: 165 GFIHDVKRIIAKMP------------------------SKKQTLFFSATM 190
>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
gi|357051322|ref|ZP_09112516.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
gi|355380144|gb|EHG27289.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
Length = 502
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 135/255 (52%), Gaps = 55/255 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L L+ S+ R GF+E TPIQ+A IP A QG+D+IG A+TG+GKT AFGLP++
Sbjct: 3 FKDLELSNELLTSVERAGFEEATPIQEATIPLAL-QGRDVIGQAQTGTGKTAAFGLPML- 60
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRV 154
EK P H L+ L+I PTRELA+Q + L + K +RV
Sbjct: 61 --------------------EKIDPANHQLQGLVIAPTRELAIQTQEELYRLGKDKKIRV 100
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 101 QAVYGGADIGRQIRQLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVETLVLDEADEMLN 157
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI-----ALSA 269
G +++ II +P ++RQTL+FSAT+ ++
Sbjct: 158 MGFLEDIEKIISQVP------------------------EERQTLLFSATMPPAIKSIGV 193
Query: 270 DFRKKLKHGSLKLKQ 284
F K +H +K K+
Sbjct: 194 KFMKNPEHVQIKAKE 208
>gi|354584019|ref|ZP_09002916.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353197281|gb|EHB62774.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 490
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 134/230 (58%), Gaps = 42/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L + P+++K++ + +K PTPIQ IPA G+D++G A+TG+GKT AF +P++Q
Sbjct: 3 FQDLNISPIILKALAKENYKTPTPIQAQAIPAVL-AGRDLLGCAQTGTGKTAAFSVPMIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L E+ K G G +RAL+++PTRELALQ++D++K ++ +R
Sbjct: 62 LLNEQPPKPGM-----GR---------RIRALVLSPTRELALQISDNVKAYSQFTKLRST 107
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
IVGG+S + QER L+ ++++ TPGRL +L++ +KH V+L + VLDEADRM++
Sbjct: 108 AIVGGVSQKTQERALQQGADILIATPGRLIDLIN--QKH-VDLQHVEILVLDEADRMLDM 164
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II +P K+QTL FSAT+
Sbjct: 165 GFIHDVKRIIAKMP------------------------SKKQTLFFSATM 190
>gi|449516409|ref|XP_004165239.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
28-like [Cucumis sativus]
Length = 733
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 143/263 (54%), Gaps = 60/263 (22%)
Query: 16 PDDAEEELVSEAEISTEF-----------DAWNELRLHPLLMKSIYRLGFKEPTPIQKAC 64
P+D +++ S A ST F +++ EL L L+++ LG+ +PTPIQ AC
Sbjct: 107 PED-DDDGTSNAGDSTSFFAPSDGASFHANSFMELNLSRPLIRACEALGYAKPTPIQAAC 165
Query: 65 IPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH- 123
IP A G+DI G+A TGSGKT AF LP ++RLL Y PK
Sbjct: 166 IPLAL-TGRDICGSAITGSGKTAAFSLPTLERLL-------------------YRPKRDR 205
Query: 124 -LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPG 182
+R LI+TP RELA+QV ++++A+ ++R IVGG+S ++QE L++ P++VV TPG
Sbjct: 206 AIRVLILTPARELAIQVHSMIEKLAQFTDIRCCLIVGGLSRKEQEAALRSMPDVVVATPG 265
Query: 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQT 242
R+ + + V+L L+ +LDEADR++E G E++ ++ + P
Sbjct: 266 RMIDHLRNSMS--VDLDDLAVLILDEADRLLELGFSAEIRELVRLCP------------- 310
Query: 243 QTCVTVSSLQRKKRQTLVFSATI 265
K+RQT++FSAT+
Sbjct: 311 -----------KRRQTMLFSATM 322
>gi|290968757|ref|ZP_06560294.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
genomosp. type_1 str. 28L]
gi|335049114|ref|ZP_08542124.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
199-6]
gi|290781053|gb|EFD93644.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
genomosp. type_1 str. 28L]
gi|333764226|gb|EGL41626.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
199-6]
Length = 520
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 130/233 (55%), Gaps = 46/233 (19%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
+ + L++ ++++++ +GF+EPTPIQ IP A QG D+IG A+TG+GKT AFG+P
Sbjct: 2 LEKFQNLKISEVILQALNAMGFEEPTPIQAESIPVAL-QGADMIGQAQTGTGKTAAFGIP 60
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+++++L K P ++ ++++PTRELA+QV + L +A+ +
Sbjct: 61 VLEKIL------------------KNEPTQSIQTVVLSPTRELAMQVAEELNHLAQCTTI 102
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ +PI GG E+Q R L+ P+++V TPGRL + M G L ++HT+ VLDEAD M
Sbjct: 103 QALPIYGGQDMERQLRRLRKHPQIIVATPGRLMDHMKRGTIDLSDIHTI---VLDEADEM 159
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ G ++ +I+ P T RQTL+FSAT+
Sbjct: 160 LDMGFIDDINTIMSATPDT------------------------RQTLLFSATM 188
>gi|348553728|ref|XP_003462678.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Cavia porcellus]
Length = 841
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 110/192 (57%), Gaps = 21/192 (10%)
Query: 120 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVG 179
PK L L++TPTRELA+QV H+ VAK ++ +VGGMST+KQ+R+L PE+V+
Sbjct: 368 PKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRHPEIVIA 427
Query: 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQS 239
TPGRLWEL+ HL L L V+DEADRM+E GHF EL +++ML N+ Q
Sbjct: 428 TPGRLWELVKEKHSHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEML------NDSQY 481
Query: 240 EQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERA 299
KRQTLVFSAT+ L +L H K + ++ ++ L ++
Sbjct: 482 N-------------PKRQTLVFSATLTLVHQVPARLLHK--KHVKKIDKTAKLDLLMQKI 526
Query: 300 GMRANVAIVDLT 311
GMR ++DLT
Sbjct: 527 GMRGKPKVIDLT 538
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 189 DVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLVPAIRDRLDILGAAETGSGKTLAFAI 248
Query: 92 PIMQRLLEEREK 103
P++ +L+ +++
Sbjct: 249 PMIHAVLQWQKR 260
>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
E681]
gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
polymyxa E681]
Length = 529
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 141/254 (55%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E L P ++++I LGF+E TPIQ IP A QG+D+IG A+TG+GKT AFG+P++
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQSQSIPIAL-QGRDMIGQAQTGTGKTAAFGIPLIN 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ EK +RALI+ PTRELA+QV + ++++++ +R +
Sbjct: 63 KISRSDEK--------------------IRALIMAPTRELAIQVAEEIEKLSRFKGLRTL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK +P++++GTPGRL + ++ + ++L ++ VLDEAD M++
Sbjct: 103 PIYGGQDIVRQIRALKKKPQIIIGTPGRLLDHIN---RKTIKLEDVNTVVLDEADEMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++QSI+ +P +RQT++FSAT+ L+
Sbjct: 160 GFMEDIQSILKQVP------------------------DERQTMLFSATMPANIKRLAEQ 195
Query: 271 FRKKLKHGSLKLKQ 284
F K +H S+ KQ
Sbjct: 196 FLKNPEHVSVIPKQ 209
>gi|257091933|ref|YP_003165574.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257044457|gb|ACV33645.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 474
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 135/241 (56%), Gaps = 43/241 (17%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E+ LHP ++K++ G+ EPTP+Q+ IP A +G+D++ +++TGSGKT AF LP +
Sbjct: 3 FAEIGLHPAILKALTDSGYSEPTPVQQQAIPPAI-EGRDLMVSSQTGSGKTAAFMLPALH 61
Query: 96 RL-LEEREKAGKMLEEKGEEAEKYAPKGH---------LRALIITPTRELALQVTDHLKE 145
R L+ER A E+G P+GH R L++TPTRELALQVT ++
Sbjct: 62 RFALQERPAAVPRPSERGAAR----PRGHDRQRFQAAQPRMLVLTPTRELALQVTAATEK 117
Query: 146 VAKGIN-VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204
+ ++ VR V I+GGM KQ LL PE++V TPGRL + MS G+ ++ L
Sbjct: 118 YGRQLHHVRAVAILGGMPYPKQMELLGRNPEILVATPGRLIDHMSSGK---IDFSQLQIL 174
Query: 205 VLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
VLDEADRM++ G +++ I+ P GS RQTL+FSAT
Sbjct: 175 VLDEADRMLDMGFIEDIERIVAATP---GS---------------------RQTLLFSAT 210
Query: 265 I 265
+
Sbjct: 211 L 211
>gi|424762589|ref|ZP_18190093.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TX1337RF]
gi|431757804|ref|ZP_19546433.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
gi|402424479|gb|EJV56656.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
TX1337RF]
gi|430618309|gb|ELB55156.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
Length = 503
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 134/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+KS+ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP+++
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQAETIPLAL-VGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +R + L+ L+I PTRELA+Q + L + + VRV
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVQTLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P ++RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIISQVP------------------------EQRQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K H +K K+
Sbjct: 195 FMKSPHHVKIKAKE 208
>gi|392988049|ref|YP_006486642.1| DEAD/DEAH box helicase [Enterococcus hirae ATCC 9790]
gi|392335469|gb|AFM69751.1| DEAD-box ATP dependent DNA helicase [Enterococcus hirae ATCC 9790]
Length = 503
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 134/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+KS+ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP+++
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQSETIPLAL-SGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ R + L+ L+I PTRELA+Q + L + + VRV
Sbjct: 62 KIDTNRHE--------------------LQGLVIAPTRELAIQTQEELYRLGRDKRVRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVETLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++++II +P ++RQTL+FSAT+ +
Sbjct: 159 GFLEDIENIISKVP------------------------EERQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K H +K K+
Sbjct: 195 FMKSPTHVKIKAKE 208
>gi|346466927|gb|AEO33308.1| hypothetical protein [Amblyomma maculatum]
Length = 586
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 144/238 (60%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I W+E L ++ I LG+K+PTPIQ+ IP Q +DIIG AETGSGKTLA
Sbjct: 153 IPNPLRKWSESGLPSSILDIIKELGYKDPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLA 211
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F LP++ + K+ E+ E+A++ P A+I+ PTRELA Q+ + + AK
Sbjct: 212 FLLPLLVWITS----LPKI--ERQEDADQ-GPY----AIIMAPTRELAQQIDEETTKFAK 260
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ +R V ++GG+S E+Q L+ E+V+ TPGRL +++ ++LV L ++ VLDE
Sbjct: 261 MLEIRSVAVIGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LSRCTYIVLDE 317
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGS-NEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
ADRMI+ G E+Q I+D +P+TN + ++E + + + + K RQT++F+AT+
Sbjct: 318 ADRMIDMGFEGEVQKILDYMPVTNQKPDTDEAEDEEKLLANFASKHKYRQTVMFTATM 375
>gi|301777516|ref|XP_002924172.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Ailuropoda
melanoleuca]
gi|281354104|gb|EFB29688.1| hypothetical protein PANDA_013454 [Ailuropoda melanoleuca]
Length = 853
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 120/223 (53%), Gaps = 23/223 (10%)
Query: 105 GKMLEEKGEEAE--KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMS 162
GK+ EE G + K PK L L++TPTRELA+QV H+ VAK ++ +VGGMS
Sbjct: 360 GKLKEELGGKIATCKAHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMS 419
Query: 163 TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 222
+KQ+R+L +PE+VV TPGRLWEL+ HL L L V+DEADRM+E GHF EL
Sbjct: 420 AQKQQRMLNRQPEIVVATPGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKGHFAELS 479
Query: 223 SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKL 282
+++ML S KRQTL+FSAT+ L ++ H K
Sbjct: 480 QLLEML-------------------SDSQYNPKRQTLIFSATLTLVHQAPARILHK--KH 518
Query: 283 KQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
+ ++ ++ L ++ GMR ++DLT L E+ I
Sbjct: 519 VKKIDKTAKLDLLVQKIGMRGKPKVIDLTRNEATVESLTETKI 561
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +P++
Sbjct: 191 AWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMI 250
Query: 95 QRLLE 99
+L+
Sbjct: 251 HAVLQ 255
>gi|449460106|ref|XP_004147787.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Cucumis
sativus]
Length = 733
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 143/263 (54%), Gaps = 60/263 (22%)
Query: 16 PDDAEEELVSEAEISTEF-----------DAWNELRLHPLLMKSIYRLGFKEPTPIQKAC 64
P+D +++ S A ST F +++ EL L L+++ LG+ +PTPIQ AC
Sbjct: 107 PED-DDDGTSNAGDSTSFFAPSDGASFHANSFMELNLSRPLIRACEALGYAKPTPIQAAC 165
Query: 65 IPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH- 123
IP A G+DI G+A TGSGKT AF LP ++RLL Y PK
Sbjct: 166 IPLAL-TGRDICGSAITGSGKTAAFSLPTLERLL-------------------YRPKRDR 205
Query: 124 -LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPG 182
+R LI+TP RELA+QV ++++A+ ++R IVGG+S ++QE L++ P++VV TPG
Sbjct: 206 AIRVLILTPARELAIQVHSMIEKLAQFTDIRCCLIVGGLSRKEQEAALRSMPDVVVATPG 265
Query: 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQT 242
R+ + + V+L L+ +LDEADR++E G E++ ++ + P
Sbjct: 266 RMIDHLRNSMS--VDLDDLAVLILDEADRLLELGFSAEIRELVRLCP------------- 310
Query: 243 QTCVTVSSLQRKKRQTLVFSATI 265
K+RQT++FSAT+
Sbjct: 311 -----------KRRQTMLFSATM 322
>gi|193641157|ref|XP_001946607.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like
[Acyrthosiphon pisum]
Length = 721
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 142/231 (61%), Gaps = 16/231 (6%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E + +M+ I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKTLA+ +P
Sbjct: 294 WKESTIKSEIMEIIEKVGYKEPTPIQRQAIPIG-FQNRDIIGVAETGSGKTLAYLIP--- 349
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L+E + KM E+ + Y+ +I+ PTRELA Q+ + + + + +R V
Sbjct: 350 -LIEWIQSLPKMEREEDVDQGPYS-------IILAPTRELAQQIEEETLKFGQPLGIRTV 401
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VLDEADRMI+
Sbjct: 402 VVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVLDEADRMIDM 458
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATI 265
G ++Q I++ +P+TN + + + ++ + + +KK RQT++F+AT+
Sbjct: 459 GFEPDVQKILEYMPVTNLKPDNEDAEDESKLLANYYTKKKYRQTVMFTATM 509
>gi|403347561|gb|EJY73206.1| ATP-dependent RNA helicase DDX24 [Oxytricha trifallax]
Length = 780
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 127/199 (63%), Gaps = 17/199 (8%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
W + + L +S+ F +PT +Q ++ + AH D++ AA+TG GKTL FG+PI+
Sbjct: 35 WMQFDMSEELAESLVANQFVQPTDVQAQSLVFLNAHV--DMVIAAKTGQGKTLTFGIPIL 92
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA---KGIN 151
L++ ++++++ E E++ ++ALI++PTRELA+Q+ DH++ V
Sbjct: 93 DLLIK------RLIKDQSGEPEEFT---SIKALIMSPTRELAIQIKDHIQAVVPVQYQNK 143
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE--LHTLSFFVLDEA 209
+++ P+VGGMS +KQERLL P +V+ TPGRLWEL++ ++ L + VLDEA
Sbjct: 144 IKLCPLVGGMSIQKQERLLSYNPTIVIATPGRLWELLNERMNPYLQSALPMIDVLVLDEA 203
Query: 210 DRMIENGHFRELQSIIDML 228
DRMIE+GHF+E++ I+D +
Sbjct: 204 DRMIEDGHFKEMKYILDYV 222
>gi|345803790|ref|XP_537542.3| PREDICTED: ATP-dependent RNA helicase DDX24 [Canis lupus
familiaris]
Length = 852
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 115/209 (55%), Gaps = 21/209 (10%)
Query: 117 KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPEL 176
K PK L L++TPTRELA+QV H+ VAK ++ +VGGMST+KQ+R+L +PE+
Sbjct: 374 KVHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEI 433
Query: 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNE 236
VV TPGRLWEL+ HL L L V+DEADRM+E GHF EL +++ML
Sbjct: 434 VVATPGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEML-------- 485
Query: 237 GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLS 296
G S+ KRQTL+FSAT+ L ++ H K + ++ ++
Sbjct: 486 GDSQYN-----------PKRQTLIFSATLTLVHQAPARILHK--KHTKKIDKTAKLDLFV 532
Query: 297 ERAGMRANVAIVDLTNVSVLANKLEESFI 325
++ GMR ++DLT L E+ I
Sbjct: 533 QKIGMRGKPKVIDLTRNEATVETLTETKI 561
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +P++
Sbjct: 191 AWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMI 250
Query: 95 QRLLE 99
+L+
Sbjct: 251 HTVLQ 255
>gi|33150748|gb|AAP97252.1|AF134475_1 ATP-dependent RNA helicase [Homo sapiens]
Length = 486
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 115/209 (55%), Gaps = 21/209 (10%)
Query: 117 KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPEL 176
K PK L ++TPTRELA+QV H+ VA+ ++ +VGGMST+KQ+R+L RPE+
Sbjct: 8 KAYPKRPLLGRVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEI 67
Query: 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNE 236
VV TPGRLWEL+ HL L L V+DEADRM+E GHF EL +++ML N+
Sbjct: 68 VVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEML------ND 121
Query: 237 GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLS 296
Q KRQTLVFSAT+ L ++ H K + ++ ++ L
Sbjct: 122 SQYN-------------PKRQTLVFSATLTLVHQAPARILHK--KHTKKMDKTAKLDLLM 166
Query: 297 ERAGMRANVAIVDLTNVSVLANKLEESFI 325
++ GMR ++DLT L E+ I
Sbjct: 167 QKIGMRGKPKVIDLTRNEATVETLTETKI 195
>gi|149737471|ref|XP_001498017.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Equus caballus]
Length = 857
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 114/209 (54%), Gaps = 21/209 (10%)
Query: 117 KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPEL 176
K PK L L++TPTRELA+QV H+ VAK ++ +VGGMST+KQ+R+L +PE+
Sbjct: 380 KAHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEI 439
Query: 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNE 236
VV TPGRLWEL+ HL L L V+DEADRM+E GHF EL +++ML
Sbjct: 440 VVATPGRLWELVKEKHPHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEML-------- 491
Query: 237 GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLS 296
S KRQTLVFSAT+ L ++ H K + ++ ++ L
Sbjct: 492 -----------SDSQYNPKRQTLVFSATLTLVHQAPARILHK--KHTKKIDKTAKLDLLM 538
Query: 297 ERAGMRANVAIVDLTNVSVLANKLEESFI 325
++ G+R ++DLT L E+ I
Sbjct: 539 QKIGLRGKPKVIDLTRNEATVETLTETKI 567
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%)
Query: 14 NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
GP A+ + + + AW +L + +++++ LGF PTPIQ + A
Sbjct: 170 KGPKKAKTWMPEMRDQKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKL 229
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLE 99
DI+GAAETGSGKTLAF +P++ +L+
Sbjct: 230 DILGAAETGSGKTLAFAIPMIHAVLQ 255
>gi|302695203|ref|XP_003037280.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
gi|300110977|gb|EFJ02378.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
Length = 771
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 42/246 (17%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
SE+ E ++ + L ++K++ LGF +PTPIQ A IP A GKD++G A TGSG
Sbjct: 170 SESGAPAEHSSFLTMNLSRPILKALTTLGFTKPTPIQAATIPVALL-GKDVVGNAVTGSG 228
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KT AF +P+++RLL EKG++A R L++ PTRELA+Q + K
Sbjct: 229 KTAAFTIPMLERLL---------YREKGKKA------AATRCLVLVPTRELAVQCYEVGK 273
Query: 145 EVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204
++A ++ V IVGG+S + QE L+ARP++V+ TPGRL + + L L
Sbjct: 274 KLAAHTDIEVALIVGGLSLKSQEATLRARPDIVIATPGRLIDHIHNSPSFT--LDNLDVL 331
Query: 205 VLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
VLDEADRM+ +G EL II P K RQT++FSAT
Sbjct: 332 VLDEADRMLSDGFADELTEIIKACP------------------------KSRQTMLFSAT 367
Query: 265 IALSAD 270
+ S D
Sbjct: 368 MTDSVD 373
>gi|338535344|ref|YP_004668678.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
gi|337261440|gb|AEI67600.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
Length = 516
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 124/230 (53%), Gaps = 43/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL+LH L++++ G+ PTPIQ+ IP A G+D++G A+TG+GKT AF LPI+Q
Sbjct: 3 FDELQLHDTLLRAVKAEGYTTPTPIQQKAIPHAL-TGRDVLGVAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL + G +R L++TPTRELA QV D + KG+ +R
Sbjct: 62 RLSAKAPAGGAR---------------PVRCLVLTPTRELAGQVGDSFQTYGKGLPLRHA 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ Q + L+ +++V TPGRL +LM E+ V L +L FVLDEADRM++
Sbjct: 107 VIFGGVGQNPQVQALRNGVDVLVATPGRLLDLM---EQGFVSLRSLEVFVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ +I LP KRQTL FSAT+
Sbjct: 164 GFIHDVRRVIKALP------------------------PKRQTLFFSATL 189
>gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
TX1330]
gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733]
gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408]
gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|431036552|ref|ZP_19492322.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
gi|431752972|ref|ZP_19541651.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
gi|431763081|ref|ZP_19551634.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
TX1330]
gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733]
gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408]
gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|430563092|gb|ELB02323.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
gi|430612933|gb|ELB49957.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
gi|430622775|gb|ELB59485.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
Length = 503
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 133/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+KS+ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP+++
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQAETIPLAL-VGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +R + L+ L+I PTRELA+Q + L + + VRV
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVQTLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P +RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIISQVP------------------------DQRQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K H +K K+
Sbjct: 195 FMKSPHHVKIKAKE 208
>gi|225457931|ref|XP_002273443.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Vitis
vinifera]
Length = 732
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 134/239 (56%), Gaps = 48/239 (20%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
+++ EL L L+++ LG+ +PTPIQ ACIP A G+DI G+A TGSGKT AF LP
Sbjct: 125 NSFLELNLSRPLLRACEALGYTKPTPIQAACIPIAL-TGRDICGSAITGSGKTAAFSLPT 183
Query: 94 MQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIITPTRELALQVTDHLKEVAKGIN 151
++RLL + PK +R L++TPTRELA+QV ++++A+ +
Sbjct: 184 LERLL-------------------FRPKRVQAIRVLVLTPTRELAVQVHSMMEKLAQFTD 224
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+R IVGG+S++ QE L++ P++VV TPGR+ + + V+L L+ +LDEADR
Sbjct: 225 IRCCLIVGGLSSKMQETALRSMPDVVVATPGRMIDHLRNSMS--VDLEDLAVLILDEADR 282
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
++E G E++ ++ + P K+RQT++FSAT+ D
Sbjct: 283 LLELGFNAEIRELVRLCP------------------------KRRQTMLFSATMTEEVD 317
>gi|342320500|gb|EGU12440.1| ATP-dependent RNA helicase MAK5 [Rhodotorula glutinis ATCC 204091]
Length = 871
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 185/372 (49%), Gaps = 60/372 (16%)
Query: 13 SNGPDDAEEELVSEA--EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACI----- 65
SNG A EE E ++ E AW+ + L L +++ L F +PT IQ+ +
Sbjct: 199 SNG--GAVEEAADEPPFDVEAELPAWSHIPLANPLYRALAELKFTKPTEIQEKALLVGED 256
Query: 66 -----------------PAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108
A A + D++G A+TGSGKTLA+GLPI+ +L + +
Sbjct: 257 AKAQAEGEEEQEKSAFDTAPAGREHDVVGIAQTGSGKTLAYGLPILSHILSQPSPSSSPS 316
Query: 109 EEKGEEAEKYAPKGHLRALIITPTRELALQV-----------------TDHLKEVA---- 147
+ + E P L ALI+ PTRELALQV + ++VA
Sbjct: 317 DSDSDADEPSLPSTRLAALILCPTRELALQVRTSLSSLSVRSLPLRTPSPETEKVAPEDP 376
Query: 148 ----KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
+G V+VV + GGMS EKQ+R L+ ++VV TPGRLW+L+ + + E+ + F
Sbjct: 377 RKRKQGRLVQVVALTGGMSVEKQKRQLERGADIVVATPGRLWDLIGESDMLVQEIKNIKF 436
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTNGS-NEGQSEQTQTCV----TVSSLQ-RKKRQ 257
V+DEADRMIENGHF EL+SI+ + + ++G + + V V++L R +
Sbjct: 437 LVIDEADRMIENGHFAELESIVRLTRREQATPDDGFVDDFDSAVASRTNVTTLPCRPDMR 496
Query: 258 TLVFSATIALSADFRKKLKHGSLK-LKQSVNG-LNSIETLSERAGMR-ANVAIVDLTNVS 314
T VFSAT++ K K G K + ++V G + S++ L E R + I+DL+
Sbjct: 497 TFVFSATMSKELQLNLKRKGGPKKFVPKAVEGEMTSLDDLLELLDFRDPDPEIIDLSPEH 556
Query: 315 VLANKLEESFIE 326
L L+E +E
Sbjct: 557 GLVETLKECKVE 568
>gi|261404961|ref|YP_003241202.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261281424|gb|ACX63395.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
Length = 506
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 42/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L + P+++K++ + +K PTPIQ IPA G+D++G A+TG+GKT AF +P++Q
Sbjct: 3 FENLNISPVILKALAKENYKAPTPIQAQAIPAVL-AGRDLLGCAQTGTGKTAAFSVPMIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L ++ K G +RAL+++PTRELALQ++D++K ++ +R
Sbjct: 62 LLNQQPPKPGMGR--------------RIRALVLSPTRELALQISDNVKAYSQFTKLRST 107
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
IVGG+S + QER L+ ++++ TPGRL +LM+ +KH V+L + VLDEADRM++
Sbjct: 108 AIVGGVSQKTQERALQQGADILIATPGRLLDLMN--QKH-VDLQHVEILVLDEADRMLDM 164
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II +P K+QTL FSAT+
Sbjct: 165 GFIHDVKRIIAKMP------------------------SKKQTLFFSATM 190
>gi|374323237|ref|YP_005076366.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
gi|357202246|gb|AET60143.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
Length = 529
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 141/254 (55%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E L P ++++I LGF+E TPIQ IP A QG+D+IG A+TG+GKT AFG+P++
Sbjct: 4 FAEFNLEPKVLEAITELGFEEATPIQSQSIPLAL-QGRDMIGQAQTGTGKTAAFGIPLIS 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +K +RALI+ PTRELA+QV + ++++++ +R +
Sbjct: 63 KISRNDDK--------------------IRALIMAPTRELAIQVAEEIEKLSRFKGLRTL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK +P++++GTPGRL + ++ + ++L ++ VLDEAD M++
Sbjct: 103 PIYGGQDIVRQIRALKKKPQIIIGTPGRLLDHIN---RKTIKLEDVNTVVLDEADEMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++QSI+ +P +RQT++FSAT+ L+
Sbjct: 160 GFMEDIQSILKQVP------------------------DERQTMLFSATMPPNIKRLAEQ 195
Query: 271 FRKKLKHGSLKLKQ 284
F K +H S+ KQ
Sbjct: 196 FLKNPEHVSVIPKQ 209
>gi|15896262|ref|NP_349611.1| ATP-dependent RNA [Clostridium acetobutylicum ATCC 824]
gi|337738217|ref|YP_004637664.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384459728|ref|YP_005672148.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
acetobutylicum EA 2018]
gi|15026068|gb|AAK80951.1|AE007798_3 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis
ortholog [Clostridium acetobutylicum ATCC 824]
gi|325510417|gb|ADZ22053.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
acetobutylicum EA 2018]
gi|336293434|gb|AEI34568.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 528
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 141/248 (56%), Gaps = 52/248 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++L+L+ ++K+I +GF+EP+ IQ IP G D+IG A+TG+GKT+AFG PI+
Sbjct: 6 FSDLKLNSSVLKAIDDMGFEEPSKIQAEAIPVVI-DGYDMIGQAQTGTGKTVAFGAPIIS 64
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + EK G ++A+I+TPTRELA+Q+TD L ++K VRV+
Sbjct: 65 KIKDIDEKEG------------------VQAIILTPTRELAIQITDELTRLSKYARVRVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG S E+Q R +K +++V TPGR +M ++ V+L + F VLDEAD M++
Sbjct: 107 PIYGGQSIERQMRAIKRGVDVIVATPGR---IMDHIKRKTVKLDKVKFLVLDEADEMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI-----ALSAD 270
G +++ II N S + RQT++FSAT+ L+++
Sbjct: 164 GFIDDIEGII-----KNISGD-------------------RQTMLFSATMPAPIKKLASN 199
Query: 271 FRKK-LKH 277
+ KK +KH
Sbjct: 200 YMKKEVKH 207
>gi|431792618|ref|YP_007219523.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430782844|gb|AGA68127.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 500
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 127/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L+KS+ +GF+E TPIQ+ IP A +GKD+IG A+TG+GKT AFG+P++Q
Sbjct: 4 FKELGLSEPLIKSVLNMGFEEATPIQEQTIPLAL-EGKDVIGQAQTGTGKTAAFGIPLIQ 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ E E ++ +++TPTRELA+QV + L ++ + +R +
Sbjct: 63 KIAETSE--------------------DIQGIVLTPTRELAVQVAEELNKIGQFKGIRTL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG ++Q R LK RP ++V TPGRL + M + + L ++ +LDEAD M+
Sbjct: 103 PIYGGQEIDRQIRALKKRPHIIVATPGRLMDHM---RRRTIRLQNINMVILDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P + RQTL+FSAT+
Sbjct: 160 GFVEDIETILQEIP------------------------EARQTLLFSATM 185
>gi|33150792|gb|AAP97274.1|AF145022_1 ATP-dependent RNA helicase [Homo sapiens]
Length = 454
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 115/209 (55%), Gaps = 21/209 (10%)
Query: 117 KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPEL 176
K PK L ++TPTRELA+QV H+ VA+ ++ +VGGMST+KQ+R+L RPE+
Sbjct: 8 KAYPKRPLLGRVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEI 67
Query: 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNE 236
VV TPGRLWEL+ HL L L V+DEADRM+E GHF EL +++ML N+
Sbjct: 68 VVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEML------ND 121
Query: 237 GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLS 296
Q KRQTLVFSAT+ L ++ H K + ++ ++ L
Sbjct: 122 SQYN-------------PKRQTLVFSATLTLVHQAPARILHK--KHTKKMDKTAKLDLLM 166
Query: 297 ERAGMRANVAIVDLTNVSVLANKLEESFI 325
++ GMR ++DLT L E+ I
Sbjct: 167 QKIGMRGKPKVIDLTRNEATVETLTETKI 195
>gi|91084021|ref|XP_975350.1| PREDICTED: similar to pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 [Tribolium castaneum]
gi|270008001|gb|EFA04449.1| hypothetical protein TcasGA2_TC014753 [Tribolium castaneum]
Length = 762
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 148/232 (63%), Gaps = 16/232 (6%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W E + L++ I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKTLAF +P++
Sbjct: 337 SWKESGIQKELLEIIDKVGYKEPTPIQRQAIPIGM-QNRDIIGVAETGSGKTLAFLIPLL 395
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ + K+ E+ E+A++ P A+I+ PTRELA Q+ + + + + +R
Sbjct: 396 SWI----QSLPKI--ERTEDADQ-GPY----AIILAPTRELAQQIEEETVKFGQPLGIRT 444
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ V+DEADRMI+
Sbjct: 445 VVVVGGLSREEQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVMDEADRMID 501
Query: 215 NGHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++Q I++ +P+TN + ++E ++ + + ++K RQT++F+AT+
Sbjct: 502 LGFEADVQKILEYMPVTNLKPDSEEAEDSKIILANYNSKKKYRQTVMFTATM 553
>gi|296215803|ref|XP_002754286.1| PREDICTED: ATP-dependent RNA helicase DDX24 isoform 1 [Callithrix
jacchus]
Length = 856
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 119/218 (54%), Gaps = 22/218 (10%)
Query: 108 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE 167
L++K + Y PK L L++TPTRELALQV H+ VA+ ++ +VGGMST+KQ+
Sbjct: 371 LDDKSATCKAY-PKRPLLGLVLTPTRELALQVKQHIDAVARFTGIKTAILVGGMSTQKQQ 429
Query: 168 RLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 227
R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GHF EL +++M
Sbjct: 430 RMLNRYPEIVIATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEM 489
Query: 228 LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVN 287
L N+ Q KRQTLVFSAT+ L ++ H K + ++
Sbjct: 490 L------NDSQYN-------------PKRQTLVFSATLTLVHQAPARILHK--KHTKKMD 528
Query: 288 GLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFI 325
++ L + G+R ++DLT L E+ I
Sbjct: 529 KTAKLDLLMHKIGIRGKPKVIDLTRNEATVETLTETKI 566
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 189 DVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 248
Query: 92 PIMQRLLE 99
P++ +L+
Sbjct: 249 PMIHAVLQ 256
>gi|198425972|ref|XP_002127372.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
[Ciona intestinalis]
Length = 790
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 144/237 (60%), Gaps = 17/237 (7%)
Query: 36 WNEL-RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
W E L P +++ I+R+G+K+PTPIQ+ IP +DIIG AETGSGKT AF +P++
Sbjct: 363 WKECGDLPPEIVEVIHRIGYKDPTPIQRQAIPIG-FLNRDIIGVAETGSGKTAAFLIPLL 421
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ K+ E+ E+A+K P ALI+ PTRELA Q+ + + K + +R
Sbjct: 422 AWITS----LPKI--ERLEDADK-GP----YALILAPTRELAQQIEEETIKFGKELGIRT 470
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V ++GG+S E Q L+ E+V+ TPGRL +++ E + L ++ VLDEADRMI+
Sbjct: 471 VAVIGGLSREDQGFKLRMGCEIVIATPGRLIDVL---ENRYIVLSQCTYVVLDEADRMID 527
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATIALSAD 270
G ++Q I+D +P+TN + +S + + + + L + K RQT++F+AT+ ++ +
Sbjct: 528 MGFEPDVQKILDHMPVTNQKPDDESMEDKIIMKSNFLTKHKYRQTVMFTATMPVAVE 584
>gi|302036818|ref|YP_003797140.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|190343232|gb|ACE75620.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|300604882|emb|CBK41215.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
Length = 431
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 128/236 (54%), Gaps = 47/236 (19%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
+T F +++ L + P L++++ + GF EPT IQ IP A G+D++G A+TG+GKT AF
Sbjct: 3 TTAFTSFDSLGVSPTLLRNLTKAGFAEPTAIQAQAIPHAL-AGRDVLGCAQTGTGKTAAF 61
Query: 90 GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 149
+P+++RL PKG RALI+ PTRELA+Q+ + + +
Sbjct: 62 VIPMLERL-------------------SGTPKGQPRALILAPTRELAIQIQATIDTLGRD 102
Query: 150 INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209
+ + +VGG + Q R L+ RP+++V TPGRL + M G + L +S VLDEA
Sbjct: 103 LQLFATTVVGGADMQAQVRGLRQRPDIIVATPGRLLDHMWNGT---ISLLAMSILVLDEA 159
Query: 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
DRM++ G +++ I+D +P ++RQTL+FSAT+
Sbjct: 160 DRMLDMGFAQQINQILDAMP------------------------EERQTLLFSATM 191
>gi|218186850|gb|EEC69277.1| hypothetical protein OsI_38328 [Oryza sativa Indica Group]
Length = 802
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 138/254 (54%), Gaps = 48/254 (18%)
Query: 14 NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
+G D + S S +++ EL L L+++ LG+++PTPIQ ACIP A G+
Sbjct: 174 SGVVDPSKFFASSEGASFHANSFLELNLSRPLLRACEALGYQKPTPIQAACIPLAL-TGR 232
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIITP 131
DI G+A TGSGKT AF LP+++RLL + PK +R LI+TP
Sbjct: 233 DICGSAITGSGKTAAFSLPVLERLL-------------------FRPKRVPAIRVLILTP 273
Query: 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191
TRELA V ++++A+ ++R IVGG+ST+ QE L++ P++VV TPGR+ + +
Sbjct: 274 TRELAAPVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRNS 333
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251
V L L+ +LDEADR++E G E+Q +I M P
Sbjct: 334 LS--VGLEDLAILILDEADRLLELGFSAEIQELIRMCP---------------------- 369
Query: 252 QRKKRQTLVFSATI 265
++RQT++FSAT+
Sbjct: 370 --RRRQTMLFSATM 381
>gi|74178110|dbj|BAE29843.1| unnamed protein product [Mus musculus]
gi|74220253|dbj|BAE31305.1| unnamed protein product [Mus musculus]
gi|74225346|dbj|BAE31603.1| unnamed protein product [Mus musculus]
Length = 857
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 120/212 (56%), Gaps = 23/212 (10%)
Query: 102 EKAGKMLEEKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 159
E+AGK+ +E ++ Y P+ L L++TPTRELA+QV H+ VAK + +VG
Sbjct: 364 EQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVG 423
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR 219
GMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+D ADRM+E GHF
Sbjct: 424 GMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDGADRMVEKGHFA 483
Query: 220 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279
EL +++ML N+ Q + RQTLVFSAT+ L ++ H
Sbjct: 484 ELSQLLEML------NDSQYNPS-------------RQTLVFSATLTLVHQAPARILHK- 523
Query: 280 LKLKQSVNGLNSIETLSERAGMRANVAIVDLT 311
K + ++ + ++ L ++ GMR ++DLT
Sbjct: 524 -KHVKKMDKTDKLDLLMQKVGMRGKPKVIDLT 554
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 191 DVSAWRDLFVPEAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 250
Query: 92 PIMQRLLE 99
P++ +L+
Sbjct: 251 PMIHSVLQ 258
>gi|418322741|ref|ZP_12934053.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
pettenkoferi VCU012]
gi|365231063|gb|EHM72126.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
pettenkoferi VCU012]
Length = 496
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 133/230 (57%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + +++++ +GF+EPTPIQ+ IP A +G+DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISAKTVETLHNMGFEEPTPIQQESIPYAL-EGRDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK + ++ALI+ PTRELA+QV + L+E ++G VRVV
Sbjct: 62 --------------------EKVVGRDGVQALILAPTRELAMQVAEQLREFSEGQRVRVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM ++Q + LK RP++VVGTPGR+ + ++ +HTL VLDEAD M+
Sbjct: 102 TVFGGMPIDRQIKALKKRPQIVVGTPGRVIDHLNRRTLKTNGIHTL---VLDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +++RQT++FSAT+
Sbjct: 159 GFIDDMKFIMDKIP-----------------------KEQRQTMLFSATM 185
>gi|365982507|ref|XP_003668087.1| hypothetical protein NDAI_0A06900 [Naumovozyma dairenensis CBS 421]
gi|343766853|emb|CCD22844.1| hypothetical protein NDAI_0A06900 [Naumovozyma dairenensis CBS 421]
Length = 659
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 160/307 (52%), Gaps = 44/307 (14%)
Query: 36 WNELRLHPL-LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
W L L +++ + LGF +PT IQ IP A + DI+G A TGSGKTLA+G+PI+
Sbjct: 71 WTNLAKFSLTILQGLQSLGFTKPTAIQAKAIPYAL-ENADIMGKASTGSGKTLAYGIPIL 129
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA----KGI 150
+ L++ +K + ++ K ALI TPTRELA QVT HL+ ++ K
Sbjct: 130 ENLIKTAKK---------DSSQTDGIKNKPIALIFTPTRELAQQVTKHLQNISQLFLKNS 180
Query: 151 NVRVVPIVGGMSTEKQERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
++ + GG+S +KQERLLK ++V+ TPGR EL+ + + VLDE
Sbjct: 181 PYAILSLTGGLSIQKQERLLKYDNSGKIVIATPGRFLELLEKNNDLIERFCQIDTLVLDE 240
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR----QTLVFSAT 264
ADR++++GHF E + I+ L GQ + L+ KK QT+++SAT
Sbjct: 241 ADRLLQDGHFDEFEKILKYL--------GQKRK--------ELKLKKANQYWQTMIYSAT 284
Query: 265 IALSADFRKKLKHGSLKLKQSVNGL-NSIET----LSERAGMRANVAIVDLTNVSVLANK 319
S D KL + S K + + N +ET L + ++ I+D+ ++++
Sbjct: 285 --FSIDLFDKLANSSWKSNKKIKQYENEMETVLHHLMNKIHFQSKPIIIDMNPDQKISSQ 342
Query: 320 LEESFIE 326
++ES IE
Sbjct: 343 IKESLIE 349
>gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
Length = 780
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 128/237 (54%), Gaps = 44/237 (18%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
+ E + EL L L+K++ +LGF +PTPIQ IP A + GKDI+ +A TGSGKT A
Sbjct: 177 VEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKTIPLALN-GKDILASASTGSGKTAA 235
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F LPI++RLL ++E A +R L++ PTRELALQ L+ +A+
Sbjct: 236 FLLPILERLL-------------FRDSEYRA----IRVLVLLPTRELALQCQSVLENLAQ 278
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
N+ IVGG+S + QE L+ RP++V+ TPGRL + + H + L L +LDE
Sbjct: 279 FSNITSCLIVGGLSNKAQEVELRKRPDVVIATPGRLIDHLLNA--HGIGLEDLEILILDE 336
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
ADR+++ G E+ I+D P + RQT++FSAT+
Sbjct: 337 ADRLLDMGFKDEINKIVDSCPTS------------------------RQTMLFSATL 369
>gi|375090043|ref|ZP_09736362.1| hypothetical protein HMPREF9708_00752 [Facklamia languida CCUG
37842]
gi|374565936|gb|EHR37191.1| hypothetical protein HMPREF9708_00752 [Facklamia languida CCUG
37842]
Length = 499
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 125/216 (57%), Gaps = 49/216 (22%)
Query: 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110
++GF+EPTPIQ+ IP A QGKD+IG A+TG+GKT AFGLP++Q L +R ++
Sbjct: 18 QMGFEEPTPIQQQAIPLAL-QGKDLIGQAQTGTGKTAAFGLPLLQHL--DRNQSA----- 69
Query: 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ-ERL 169
++ L++TPTRELA+QV + L + KG+ RV + GG S KQ ER+
Sbjct: 70 -------------IQGLVVTPTRELAIQVQEELYRLGKGVRARVYVVYGGTSLSKQIERI 116
Query: 170 LKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229
+ +P+++VGTPGRL +L+ ++ +++ + L VLDEAD M+ G ++++II P
Sbjct: 117 KRQQPQIIVGTPGRLLDLI---QRKVLKFNHLQTLVLDEADEMLNMGFIEDIKAIIQATP 173
Query: 230 MTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
K RQTL+FSAT+
Sbjct: 174 ------------------------KNRQTLLFSATM 185
>gi|322796322|gb|EFZ18887.1| hypothetical protein SINV_00745 [Solenopsis invicta]
Length = 420
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 136/263 (51%), Gaps = 51/263 (19%)
Query: 39 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLL 98
L+L+ L+ +G K+PTPIQ+ CIP G+D IG A+TGSGKTLAF LPI+Q+L
Sbjct: 11 LKLNSWLLAQCKSMGLKKPTPIQENCIPRIL-MGEDCIGCAKTGSGKTLAFALPILQKLC 69
Query: 99 EEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIV 158
E+ P G + AL++TPTRELA Q+ D + K IN++ IV
Sbjct: 70 ED-------------------PYG-IFALVLTPTRELAFQIADQFAAIGKVINLKKCVIV 109
Query: 159 GGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 218
GGM Q L RP +VV TPGRL + + + L + F VLDEADR++ GHF
Sbjct: 110 GGMDMMIQGLELSKRPHIVVATPGRLADHLDSC--NTFSLQKIKFLVLDEADRLL-GGHF 166
Query: 219 -RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277
++L+ I +LP K++Q L FSAT+ + D KK+
Sbjct: 167 DKQLKKIFAVLP------------------------KQKQILFFSATMTDTLDKVKKMAC 202
Query: 278 GSLKLKQSVN--GLNSIETLSER 298
+ Q + G+ +++ L +R
Sbjct: 203 NKVFTWQEKDDAGIATVKELDQR 225
>gi|417644460|ref|ZP_12294450.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus warneri
VCU121]
gi|330684829|gb|EGG96522.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU121]
Length = 509
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 135/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDKTVQTLESMGFKEPTPIQKDSIPYAL-EGHDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ GE+ +++LI+ PTRELA+QV + LK +KG NV+VV
Sbjct: 63 KVV-------------GEQG--------VQSLILAPTRELAMQVAEQLKVFSKGQNVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ ++HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTNDIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|239637375|ref|ZP_04678357.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
gi|239596975|gb|EEQ79490.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
Length = 509
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 135/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDKTVQTLESMGFKEPTPIQKDSIPYAL-EGHDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ GE+ +++LI+ PTRELA+QV + LK +KG NV+VV
Sbjct: 63 KVV-------------GEQG--------VQSLILAPTRELAMQVAEQLKVFSKGQNVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ ++HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTNDIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|410659385|ref|YP_006911756.1| Cold-shock DEAD-box protein A [Dehalobacter sp. DCA]
gi|410662371|ref|YP_006914742.1| Cold-shock DEAD-box protein A [Dehalobacter sp. CF]
gi|409021740|gb|AFV03771.1| Cold-shock DEAD-box protein A [Dehalobacter sp. DCA]
gi|409024727|gb|AFV06757.1| Cold-shock DEAD-box protein A [Dehalobacter sp. CF]
Length = 471
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 141/256 (55%), Gaps = 53/256 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E+ L +L ++I +GF+E TPIQ+ IP +GKDIIG A+TG+GKT AFG+P+++
Sbjct: 4 FFEIGLSSVLTQAISEMGFEETTPIQERTIPLVL-EGKDIIGQAQTGTGKTAAFGIPMIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
R+ +RE ++AL++TPTRELA+QV + L + + VR +
Sbjct: 63 RMKPDRES--------------------IKALVVTPTRELAIQVAEELNRIGQFKGVRSL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG ++Q R L+ RP+++VGTPGRL + M + + L + VLDEAD M+
Sbjct: 103 PIYGGQDIDRQIRSLRNRPQIIVGTPGRLMDHM---RRRTIRLQQVETVVLDEADEMLSM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++++I+ +P ++RQTL+FSAT+ L+
Sbjct: 160 GFVEDIENILKEVP------------------------EQRQTLLFSATMPKSILDLAQR 195
Query: 271 FRKKLKHGSLKLKQSV 286
F + ++ S+K K+ +
Sbjct: 196 FMQNPEYISMKTKEII 211
>gi|445059172|ref|YP_007384576.1| DEAD-box ATP dependent DNA helicase [Staphylococcus warneri SG1]
gi|443425229|gb|AGC90132.1| DEAD-box ATP dependent DNA helicase [Staphylococcus warneri SG1]
Length = 509
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 135/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDKTVQTLESMGFKEPTPIQKDSIPYAL-EGHDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ GE+ +++LI+ PTRELA+QV + LK +KG NV+VV
Sbjct: 63 KVV-------------GEQG--------VQSLILAPTRELAMQVAEQLKVFSKGQNVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ ++HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTNDIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|398814336|ref|ZP_10573017.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398036605|gb|EJL29814.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 529
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 127/230 (55%), Gaps = 49/230 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++ LH ++++I+ +GF+EP+PIQ ACIP G D+IG A+TG+GKT AFG+P++
Sbjct: 4 FSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVL-DGGDLIGQAQTGTGKTAAFGIPLV- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK P ++A+++TPTRELA+QV L ++K VR +
Sbjct: 62 --------------------EKITPANRVQAIVLTPTRELAIQVAGELLRISKYNKVRTL 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG S Q R L+ ++VVGTPGR+ + + L +HTL VLDEAD M++
Sbjct: 102 PIYGGQSIGHQIRALRQGVQIVVGTPGRVMDHLRRKTLKLDNVHTL---VLDEADEMLDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++II+ +P +RQTL+FSAT+
Sbjct: 159 GFIEDIETIINHMP------------------------DERQTLLFSATM 184
>gi|226312984|ref|YP_002772878.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
gi|226095932|dbj|BAH44374.1| probable ATP-dependent RNA helicase [Brevibacillus brevis NBRC
100599]
Length = 529
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 127/230 (55%), Gaps = 49/230 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++ LH ++++I+ +GF+EP+PIQ ACIP G D+IG A+TG+GKT AFG+P++
Sbjct: 4 FSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVL-DGGDLIGQAQTGTGKTAAFGIPLV- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK P ++A+++TPTRELA+QV L ++K VR +
Sbjct: 62 --------------------EKITPANRVQAIVLTPTRELAIQVAGELLRISKYNKVRTL 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG S Q R L+ ++VVGTPGR+ + + L +HTL VLDEAD M++
Sbjct: 102 PIYGGQSIGHQIRALRQGVQIVVGTPGRVMDHLRRKTLKLDHVHTL---VLDEADEMLDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++II+ +P +RQTL+FSAT+
Sbjct: 159 GFIEDIETIINHMP------------------------DERQTLLFSATM 184
>gi|357013855|ref|ZP_09078854.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 433
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 132/231 (57%), Gaps = 44/231 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L+L P ++K++ + + +PTPIQ+ IP G+D+ G A+TG+GKT AF LPI+Q
Sbjct: 3 FEQLKLIPPILKALAKENYTQPTPIQEQAIPPVL-AGRDLFGCAQTGTGKTAAFLLPIIQ 61
Query: 96 RL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
L ++R +GK + +R+LI+TPTRELA+Q++D+ K + +N+R
Sbjct: 62 LLSAQQRRPSGKRV---------------IRSLILTPTRELAIQISDNFKAYGRFLNLRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
IVGG+S + QE+ L+ ++++ TPGRL +LM+ G +L + VLDEADRM++
Sbjct: 107 AVIVGGVSQKAQEQALEQGMDILIATPGRLIDLMNQG---FADLRHVQILVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II LP KRQTL FSAT+
Sbjct: 164 MGFIHDMRRIIAKLP------------------------AKRQTLFFSATM 190
>gi|257896496|ref|ZP_05676149.1| helicase [Enterococcus faecium Com12]
gi|257833061|gb|EEV59482.1| helicase [Enterococcus faecium Com12]
Length = 503
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 133/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+KS+ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP+++
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQAETIPLAL-VGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +R + L+ L+I PTRELA+Q + L + + VRV
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVQTLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P +RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIIFQVP------------------------DQRQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K H +K K+
Sbjct: 195 FMKSPHHVKIKAKE 208
>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 524
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 126/232 (54%), Gaps = 50/232 (21%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++N+L LHP + ++I +GF+EP+ IQ IP +G DIIG A+TG+GKTLAFG P++
Sbjct: 5 SFNDLNLHPKVFEAIDNMGFEEPSQIQAESIPVIL-EGNDIIGQAQTGTGKTLAFGAPML 63
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKG-HLRALIITPTRELALQVTDHLKEVAKGINVR 153
++ PK H+ ALI+TPTRELA+QV D L +AK + +
Sbjct: 64 SKI---------------------TPKNKHISALILTPTRELAIQVNDELSRIAKFMKIL 102
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
++PI GG E+Q + LK +VVGTPGR+ + + + ++L + F +DEAD M+
Sbjct: 103 LLPIYGGQPIERQIKSLKRGINIVVGTPGRILDHL---HRKTLDLSNIEFLTIDEADEML 159
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G +++ II SN RQTL+FSAT+
Sbjct: 160 DMGFIEDIEEII------KASNPN------------------RQTLLFSATM 187
>gi|15667450|dbj|BAB68226.1| putative autoaggregation-mediating protein [Enterococcus faecium]
Length = 210
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 132/253 (52%), Gaps = 53/253 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+KS+ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP+++
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +R + L+ L+I PTRELA+Q + L + + VRV
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVQTLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P +RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIISQVP------------------------DQRQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLK 283
F K H +K K
Sbjct: 195 FMKNPHHVKIKRK 207
>gi|156549811|ref|XP_001606554.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Nasonia
vitripennis]
Length = 456
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 140/276 (50%), Gaps = 64/276 (23%)
Query: 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
TEF +L + ++ + +G K+PTPIQ+ CIPA GKD IG A+TGSGKTLAF
Sbjct: 2 TEF---TDLNISSWIIDQLKLIGVKKPTPIQQNCIPAIL-SGKDCIGCAKTGSGKTLAFA 57
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150
LPI+Q+L E+ P G + AL++TPTRELA Q+ D + K I
Sbjct: 58 LPILQKLSED-------------------PYG-IFALVLTPTRELAFQIGDQFAAIGKTI 97
Query: 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS-----FFV 205
N++ IVGGM Q + L P +VV TPGRL + HL +T S F V
Sbjct: 98 NLKKCTIVGGMDMVVQGQELARHPHIVVATPGRLAD-------HLESCNTFSLARIKFLV 150
Query: 206 LDEADRMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
LDEADR++ GHF E L I LP K RQ+L+FSAT
Sbjct: 151 LDEADRLL-GGHFDEQLSVIFKALP------------------------KNRQSLLFSAT 185
Query: 265 IALSADFRKKLKHGSLKLKQSVN--GLNSIETLSER 298
I + D K++ + +S + G+ +++ L +R
Sbjct: 186 ITDALDKVKQVSTKEWFIWESTDDSGVATVKELDQR 221
>gi|351698834|gb|EHB01753.1| ATP-dependent RNA helicase DDX24 [Heterocephalus glaber]
Length = 989
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 117/212 (55%), Gaps = 23/212 (10%)
Query: 102 EKAGKMLEEKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 159
E G++ +E ++ Y PK L L++TPTRELA+QV H+ VAK ++ +VG
Sbjct: 364 ELTGELKQELDDKIATYKTHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVG 423
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR 219
GMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GHF
Sbjct: 424 GMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHSHLSNLRQLRCLVVDEADRMVEKGHFA 483
Query: 220 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279
EL +++ML S KRQTLVFSAT+ L +L H
Sbjct: 484 ELSQLLEML-------------------SDSQYNPKRQTLVFSATLTLVHQAPARLLHK- 523
Query: 280 LKLKQSVNGLNSIETLSERAGMRANVAIVDLT 311
K + ++ ++ L ++ GMR ++DLT
Sbjct: 524 -KHVKKMDKTAKLDLLMQKIGMRGKPKVIDLT 554
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 190 DVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLVPAIRDRLDILGAAETGSGKTLAFAI 249
Query: 92 PIMQRLLEEREK 103
P++ +L+ ++K
Sbjct: 250 PMIHAVLQWQKK 261
>gi|157121045|ref|XP_001653747.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108882993|gb|EAT47218.1| AAEL001657-PA [Aedes aegypti]
Length = 814
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 144/240 (60%), Gaps = 16/240 (6%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
+I F +W+E ++ I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKT
Sbjct: 379 GKIPNPFRSWSETGFPKEILDIIDKVGYKEPTPIQRQAIPIGL-QNRDIIGIAETGSGKT 437
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
LAF +P++ ++ K ++ E P A+I+ PTRELA Q+ + ++
Sbjct: 438 LAFLIPLLT-WIQSLPKIDRL------ETADQGP----YAIILAPTRELAQQIEEETQKF 486
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
+ + +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VL
Sbjct: 487 GQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVL 543
Query: 207 DEADRMIENGHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
DEADRMI+ G ++Q I++ +P+TN + ++E + + ++K RQT++F+AT+
Sbjct: 544 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDASKLMENFNTKKKYRQTVMFTATM 603
>gi|357152629|ref|XP_003576183.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 2
[Brachypodium distachyon]
Length = 770
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 141/256 (55%), Gaps = 49/256 (19%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
S+ PD ++ SE S + +++ EL + L+++ LG+++PTPIQ ACIP A
Sbjct: 144 ASSTPDPSKFFSSSEG-ASFKANSFLELNISRPLLRACEALGYQKPTPIQAACIPLAL-T 201
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALII 129
G+DI G+A TGSGKT AF LP+++RLL + PK +R LI+
Sbjct: 202 GRDICGSAITGSGKTAAFSLPVLERLL-------------------FRPKRVPAIRVLIL 242
Query: 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189
TPTRELA QV ++++A+ ++R IVGG+ T+ QE L++ P++VV TPGR+ + +
Sbjct: 243 TPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLPTKVQEVALRSNPDIVVATPGRIIDHLR 302
Query: 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVS 249
V L L+ +LDEADR++E G E+ +I M P
Sbjct: 303 NSLS--VGLEDLAILILDEADRLLELGFSVEINELIRMCP-------------------- 340
Query: 250 SLQRKKRQTLVFSATI 265
K+RQT++FSAT+
Sbjct: 341 ----KRRQTMLFSATM 352
>gi|145498132|ref|XP_001435054.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402183|emb|CAK67657.1| unnamed protein product [Paramecium tetraurelia]
Length = 729
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 118/192 (61%), Gaps = 21/192 (10%)
Query: 36 WNELR-LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
WN+ +H +++++ GF PTP+Q + + K II A++TGSGKTLAFG+P++
Sbjct: 3 WNQFEAIHQEVIQNLENNGFATPTPVQVEVL-NNYQKHKHIIIASQTGSGKTLAFGIPLI 61
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+L+ +K P + ALI+TPTRELA+Q+ HLK + N+ +
Sbjct: 62 SEILKNMDKY---------------PAKQIIALILTPTRELAMQIYKHLKAIT---NLSI 103
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE-LHTLSFFVLDEADRMI 213
+VGGMS EKQ+R++ A P +++ TPGRLW+ + E ++ L+ + F ++DEADRM+
Sbjct: 104 GCLVGGMSKEKQKRIINAAPVILIATPGRLWDFIENEENDKIKNLNLIKFLIIDEADRMV 163
Query: 214 ENGHFRELQSII 225
E GHF +L +I+
Sbjct: 164 ELGHFPQLDNIM 175
>gi|90578695|ref|ZP_01234505.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein
[Photobacterium angustum S14]
gi|90439528|gb|EAS64709.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein
[Photobacterium angustum S14]
Length = 427
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 127/235 (54%), Gaps = 37/235 (15%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ L LHP L+K++ LG+ PT +Q+ IP A +G D++ A+TG+GKT AF LP++
Sbjct: 2 SFQSLNLHPNLLKALTELGYSTPTDVQQQAIPLAL-KGDDVMAGAQTGTGKTAAFALPLL 60
Query: 95 QRLL---EEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
QRL+ + E+ +E + + ++RALI+TPTRELA QV D + AK
Sbjct: 61 QRLMTLPSQAEQVSTAIENN------HKSRNNIRALILTPTRELAQQVYDSITTYAKYTE 114
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
++V GG S Q + L A E++V TPGRL + + G L E+ T FVLDEADR
Sbjct: 115 IKVAVAYGGTSMNVQVKALNAGAEILVATPGRLLDHVFNGSVSLSEVET---FVLDEADR 171
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
M++ G ++Q I+ +P +RQTL FSAT +
Sbjct: 172 MLDMGFIVDIQRIMKRMP------------------------AERQTLFFSATFS 202
>gi|357152627|ref|XP_003576182.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 1
[Brachypodium distachyon]
Length = 780
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 141/255 (55%), Gaps = 49/255 (19%)
Query: 13 SNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
S+ PD ++ SE S + +++ EL + L+++ LG+++PTPIQ ACIP A G
Sbjct: 155 SSTPDPSKFFSSSEG-ASFKANSFLELNISRPLLRACEALGYQKPTPIQAACIPLAL-TG 212
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIIT 130
+DI G+A TGSGKT AF LP+++RLL + PK +R LI+T
Sbjct: 213 RDICGSAITGSGKTAAFSLPVLERLL-------------------FRPKRVPAIRVLILT 253
Query: 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
PTRELA QV ++++A+ ++R IVGG+ T+ QE L++ P++VV TPGR+ + +
Sbjct: 254 PTRELAAQVHSMIEKLAQFTDIRCCLIVGGLPTKVQEVALRSNPDIVVATPGRIIDHLRN 313
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
V L L+ +LDEADR++E G E+ +I M P
Sbjct: 314 SLS--VGLEDLAILILDEADRLLELGFSVEINELIRMCP--------------------- 350
Query: 251 LQRKKRQTLVFSATI 265
K+RQT++FSAT+
Sbjct: 351 ---KRRQTMLFSATM 362
>gi|195147728|ref|XP_002014827.1| GL19380 [Drosophila persimilis]
gi|194106780|gb|EDW28823.1| GL19380 [Drosophila persimilis]
Length = 437
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 144/238 (60%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +WNE P ++ I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKTLA
Sbjct: 4 IPNPIRSWNESGFPPEIIDIIDKVGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLA 62
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ + + K+ E+ E+ ++ P A+I+ PTRELA Q+ + + +
Sbjct: 63 FLIPLLSWI----QSLPKI--ERLEDVDQ-GP----YAIIMAPTRELAQQIEEETIKFGQ 111
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ +R V +VGG+S E+Q L+ E+V+ TPGRL +++ E + L+ ++ VLDE
Sbjct: 112 PLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRYLVLNQCTYIVLDE 168
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATI 265
ADRMI+ G ++Q I++ +P+TN + + + + + + +KK RQT++F+AT+
Sbjct: 169 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDENKLMENFYTKKKYRQTVMFTATM 226
>gi|405961989|gb|EKC27711.1| Putative ATP-dependent RNA helicase DDX49 [Crassostrea gigas]
gi|405977898|gb|EKC42325.1| Putative ATP-dependent RNA helicase DDX49 [Crassostrea gigas]
Length = 464
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 123/231 (53%), Gaps = 47/231 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L+ L + +G ++PTPIQ CIP +GKD IG A+TGSGKT AF LPI+Q
Sbjct: 18 FEKLGLNEWLWTQCHNMGLRQPTPIQVNCIPPIL-EGKDCIGCAKTGSGKTAAFALPILQ 76
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L E+ P G + AL++TPTRELA Q+ + + K INVRV
Sbjct: 77 KLSED-------------------PFG-IFALVLTPTRELAFQIAEQFNVLGKPINVRVT 116
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ +Q L+ +P +V+ TPGRL + + + L + F VLDEADR+IE+
Sbjct: 117 VITGGLDMMQQGIDLQVKPHIVISTPGRLADHLQSCDT--FSLRKIKFLVLDEADRLIED 174
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
+L++I +LP KKRQTL+FSAT+
Sbjct: 175 DFGEQLETIFKVLP------------------------KKRQTLLFSATMT 201
>gi|393218427|gb|EJD03915.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 782
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 129/236 (54%), Gaps = 42/236 (17%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ + L L+K++ LGF PTPIQ A IP A GKD++G A TGSGKT AF +P++
Sbjct: 186 SFTTMSLSRPLLKALTALGFSTPTPIQVATIPVALL-GKDVVGNAVTGSGKTAAFMIPVL 244
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+RL M E+G+ K +R +++ PTREL +Q D K+++ ++VR+
Sbjct: 245 ERL---------MYRERGKN------KAAVRCVVLVPTRELGVQCVDVAKKLSAFMDVRI 289
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
IVGG+S + QE L+ RP++V+ TPGRL + + +E TL +LDEADRM+
Sbjct: 290 SLIVGGLSLKSQEAELRTRPDIVIATPGRLIDHLRNSPSFGLE--TLDVLILDEADRMLS 347
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
+G EL+ II Q C T RQT++FSAT+ D
Sbjct: 348 DGFADELKEII-----------------QACPT-------SRQTMLFSATMTDDVD 379
>gi|429220230|ref|YP_007181874.1| DNA/RNA helicase [Deinococcus peraridilitoris DSM 19664]
gi|429131093|gb|AFZ68108.1| DNA/RNA helicase, superfamily II [Deinococcus peraridilitoris DSM
19664]
Length = 477
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 128/238 (53%), Gaps = 48/238 (20%)
Query: 29 ISTEF-DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
++T F DA++ L LH L +++ LG+ +PTPIQ +P A QG+D++GAA+TGSGKT
Sbjct: 1 MTTTFADAFSALDLHASLQRAVGELGYAKPTPIQALALPPAL-QGRDVLGAAQTGSGKTA 59
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
AF LPI+QRL + P+G RAL++ PTRELA Q+ + +A
Sbjct: 60 AFLLPILQRL-------------------QGLPRGKTRALVLAPTRELAAQIEESALALA 100
Query: 148 KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 207
K +VRV + GG+S + QE+ + +L++ TPGRL + + L L VLD
Sbjct: 101 KFTDVRVASVFGGVSMKPQEKAFRGGTDLIIATPGRLLDHF---QHPYARLEALEVLVLD 157
Query: 208 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
EADRM++ G +++ ++ LP +RQTL FSAT+
Sbjct: 158 EADRMLDMGFLPDIRRVLRHLPA------------------------RRQTLFFSATM 191
>gi|162447374|ref|YP_001620506.1| ATP-dependent RNA helicase, DEAD box containing [Acholeplasma
laidlawii PG-8A]
gi|161985481|gb|ABX81130.1| ATP-dependent RNA helicase, superfamily II [Acholeplasma laidlawii
PG-8A]
Length = 448
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 135/230 (58%), Gaps = 43/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL + + K++ G++ PT IQ+ IP G+D++G+A+TG+GKT AF +PI+Q
Sbjct: 3 FSELNIIERIQKALTLSGYEAPTAIQEQAIPILLS-GQDLLGSAQTGTGKTAAFAIPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ E +E AP+ ++ALI+TPTRELALQ+ +++K AK +N+
Sbjct: 62 KIYETKEHK--------------APR-KVQALILTPTRELALQIHENVKIYAKYLNIIST 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S ++QE LK ++V+ TPGRL +LM+ + ++ L + + VLDEAD+M++
Sbjct: 107 TIYGGVSQKRQEEALKRGVDVVIATPGRLLDLMN---QKIISLQDVRYLVLDEADQMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ SI+D P KKRQT++FSAT+
Sbjct: 164 GFIKDVTSIVDKTP------------------------KKRQTMLFSATM 189
>gi|347751920|ref|YP_004859485.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347584438|gb|AEP00705.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 475
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 130/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L P ++K++ R+GF+E +PIQ A IP QGKDIIG A+TG+GKT AFG+P+++
Sbjct: 4 FSELNLSPAILKAVKRMGFEEASPIQAATIPLTM-QGKDIIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + R + +++ +II PTRELA+QV++ L + + V V+
Sbjct: 63 KI-DHRSR-------------------NIQGIIIAPTRELAIQVSEELYRIGQDSRVHVL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK P+++VGTPGR+ + + G L +HTL VLDEAD M+
Sbjct: 103 AVYGGQDISRQIRALKNHPQIIVGTPGRILDHIHRGTLKLDHVHTL---VLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P K RQT++FSAT+
Sbjct: 160 GFIDDIEAILSTVP------------------------KDRQTMLFSATM 185
>gi|373859820|ref|ZP_09602543.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372450463|gb|EHP23951.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 487
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 130/232 (56%), Gaps = 48/232 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L P +MKSI ++GF+E TPIQ IP + + KD+IG A+TG+GKT AFG+P+++
Sbjct: 4 FQDLGLSPAMMKSIKKMGFEEATPIQAETIPLSL-ENKDLIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ ++ + +++ +++ PTRELA+QV++ L ++ G VRV+
Sbjct: 63 KVDKDAD--------------------YIQGIVVAPTRELAIQVSEELYKIGYGKRVRVL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGRL + ++ L +HT +LDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKNPHIIVGTPGRLIDHINRKNLRLDRVHTA---ILDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267
G ++++I+ +P +RQTL+FSAT+ +
Sbjct: 160 GFIEDIEAILSQIPA------------------------ERQTLLFSATMPM 187
>gi|223590136|sp|A5DF03.2|PRP28_PICGU RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
gi|190345810|gb|EDK37756.2| hypothetical protein PGUG_01854 [Meyerozyma guilliermondii ATCC
6260]
Length = 575
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 133/238 (55%), Gaps = 18/238 (7%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +W E + L+ +I +LG+KEPTPIQ+A IP A +D++G AETGSGKTLA
Sbjct: 145 IPNPLRSWKESGIPTTLLNTIDQLGYKEPTPIQRAAIPTALGH-RDVVGIAETGSGKTLA 203
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ L +K +E K E + + L++ PTRELALQ++ K+ A
Sbjct: 204 FLIPLLS-YLSAIDKDYMEVEHKQE-----SNLNKVLGLVLAPTRELALQISKEAKKFAS 257
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ VV I+GG E+ + ++ +VV TPGR L+ EK L++L +DE
Sbjct: 258 VLGYNVVTIIGGHQYEETVKSVQDGAHIVVATPGR---LIDSAEKGLIDLSQCYHLTMDE 314
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
ADRMI+ G + LQSI+ LP T+ S G + + + K R TL+F+ATI+
Sbjct: 315 ADRMIDMGFEKALQSILSFLPSTSSSGFG--------LDSTIFKVKSRITLMFTATIS 364
>gi|449667317|ref|XP_002168355.2| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Hydra
magnipapillata]
Length = 429
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 126/243 (51%), Gaps = 47/243 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L LH L K +G +PT IQ +CIP G+D IG+A+TGSGKT AF LPI+Q
Sbjct: 5 FTDLGLHEWLNKQCLEMGISKPTEIQVSCIPEIL-SGRDCIGSAKTGSGKTAAFALPIIQ 63
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L E+ P G + ALI+TPTRELA+Q+ D K + K I +
Sbjct: 64 KLSED-------------------PYG-IFALILTPTRELAIQIADQFKALGKSIGLNDA 103
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I+GG+ KQ L +P +V+ TPGRL ++ G K L+ + F VLDEADR++E
Sbjct: 104 VIIGGLDMVKQGMELSNQPHVVIATPGRLASHITSGTK--FSLNKIKFLVLDEADRLLEK 161
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275
+L+ I D + KKRQTL+FSATI + + K++
Sbjct: 162 SFENDLEVIFDNIA------------------------KKRQTLLFSATITDAINHLKEV 197
Query: 276 KHG 278
H
Sbjct: 198 AHN 200
>gi|223043911|ref|ZP_03613952.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Staphylococcus capitis SK14]
gi|314934151|ref|ZP_07841512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
caprae C87]
gi|417906606|ref|ZP_12550387.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus capitis
VCU116]
gi|222442626|gb|EEE48730.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Staphylococcus capitis SK14]
gi|313653056|gb|EFS16817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
caprae C87]
gi|341597608|gb|EGS40154.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus capitis
VCU116]
Length = 511
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 135/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDRTVQTLESMGFKEPTPIQKDSIPYAL-EGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G++ +++LI+ PTRELA+QV + L+E +KG NV+VV
Sbjct: 63 KVV-------------GQQG--------VQSLILAPTRELAMQVAEQLREFSKGQNVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTNGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P S+Q RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------SDQ--------------RQTMLFSATM 185
>gi|289550302|ref|YP_003471206.1| cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
gi|315660238|ref|ZP_07913093.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
lugdunensis M23590]
gi|385783930|ref|YP_005760103.1| putative helicase [Staphylococcus lugdunensis N920143]
gi|418415253|ref|ZP_12988459.1| hypothetical protein HMPREF9308_01624 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418635602|ref|ZP_13197976.1| DEAD/DEAH box helicase [Staphylococcus lugdunensis VCU139]
gi|289179834|gb|ADC87079.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
gi|315494665|gb|EFU83005.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
lugdunensis M23590]
gi|339894186|emb|CCB53451.1| putative helicase [Staphylococcus lugdunensis N920143]
gi|374841707|gb|EHS05164.1| DEAD/DEAH box helicase [Staphylococcus lugdunensis VCU139]
gi|410875260|gb|EKS23185.1| hypothetical protein HMPREF9308_01624 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 504
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 132/230 (57%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L + ++++ +GFKEPTPIQK IP A +G+DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKDLGISEKTVQTLENMGFKEPTPIQKDSIPYAL-EGRDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G NV+VV
Sbjct: 62 --------------------EKVVNKSGVQSLILAPTRELAMQVAEQLREFSRGQNVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM ++Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIDRQIKALKKGPQIVVGTPGRVIDHLNRRTLKTNGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|146420455|ref|XP_001486183.1| hypothetical protein PGUG_01854 [Meyerozyma guilliermondii ATCC
6260]
Length = 575
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 133/238 (55%), Gaps = 18/238 (7%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +W E + L+ +I +LG+KEPTPIQ+A IP A +D++G AETGSGKTLA
Sbjct: 145 IPNPLRSWKESGIPTTLLNTIDQLGYKEPTPIQRAAIPTALGH-RDVVGIAETGSGKTLA 203
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ L +K +E K E + + L++ PTRELALQ++ K+ A
Sbjct: 204 FLIPLLS-YLSAIDKDYMEVEHKQE-----SNLNKVLGLVLAPTRELALQISKEAKKFAS 257
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ VV I+GG E+ + ++ +VV TPGR L+ EK L++L +DE
Sbjct: 258 VLGYNVVTIIGGHQYEETVKSVQDGAHIVVATPGR---LIDSAEKGLIDLSQCYHLTMDE 314
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
ADRMI+ G + LQSI+ LP T+ S G + + + K R TL+F+ATI+
Sbjct: 315 ADRMIDMGFEKALQSILSFLPSTSSSGFG--------LDSTIFKVKSRITLMFTATIS 364
>gi|390332079|ref|XP_781784.3| PREDICTED: probable ATP-dependent RNA helicase DDX49
[Strongylocentrotus purpuratus]
Length = 478
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 129/246 (52%), Gaps = 50/246 (20%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L LH L++ +G K+PTPIQ CIP +G D IG A+TGSGKT AF LPI+
Sbjct: 13 SFSGLGLHDWLVRQCEAVGIKQPTPIQHNCIPPIL-KGSDCIGCAKTGSGKTAAFALPIL 71
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q+L E+ P G + L++TPTREL +Q+ + + + K I +RV
Sbjct: 72 QKLSED-------------------PYG-VFGLVVTPTRELGIQIAEQFRVLGKPIGLRV 111
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
++GG+ +Q R L +P +V+ TPGRL + + +LH + F VLDEADR++E
Sbjct: 112 TVVIGGIDMVEQGRELSKKPHIVIATPGRLADHIKSTST--FDLHAIKFLVLDEADRLLE 169
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274
+L+ I D LP KRQTL+FSATI D K+
Sbjct: 170 GNFGPDLEVIFDFLP------------------------AKRQTLLFSATI---TDTMKE 202
Query: 275 LKHGSL 280
L+ S+
Sbjct: 203 LQKMSM 208
>gi|254578440|ref|XP_002495206.1| ZYRO0B05852p [Zygosaccharomyces rouxii]
gi|238938096|emb|CAR26273.1| ZYRO0B05852p [Zygosaccharomyces rouxii]
Length = 751
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/322 (32%), Positives = 167/322 (51%), Gaps = 50/322 (15%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPL---LMKSIYRLGFKEPTPIQKACIPAAAHQG 72
P+ EL E S E W ++ PL ++ + + GF +PT IQK +P A +
Sbjct: 166 PNVFNSELNLEDFSSPELPEWQ--KIAPLSFTVLNGLSQQGFTKPTDIQKEVLPLAL-KN 222
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132
+DI+G A TGSGKTLA+G+P+++ L+ E + + + LI TPT
Sbjct: 223 EDIMGKAATGSGKTLAYGIPLLESLVHEPDHSKSI------------------GLIFTPT 264
Query: 133 RELALQVTDHLKEVAKGI----NVRVVPIVGGMSTEKQERLLKAR--PELVVGTPGRLWE 186
RELA QVT HLK++ + I ++P+ GG+S +KQER+LK +VV TPGR E
Sbjct: 265 RELAQQVTQHLKKLGQLIIQKSKFAILPLTGGLSIQKQERILKYENSARIVVATPGRFLE 324
Query: 187 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCV 246
L+ + ++ VLDEADR++++GHF E + I+ +L G+ +
Sbjct: 325 LIEKNIDLIPRFARINTLVLDEADRLLQDGHFDEFEKILKLL---GGARK---------- 371
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK-LKQSVNGLNSI-ETLSERAGMRAN 304
S + QT++FSAT +LS KL S K LK+ + + + + L ++ ++
Sbjct: 372 ---SFDKTGWQTMIFSATFSLS--LFSKLATASWKSLKKDEDEMEQVLKHLMQKIRFKSK 426
Query: 305 VAIVDLTNVSVLANKLEESFIE 326
IVD + + +++ ES IE
Sbjct: 427 PVIVDTNSEEKIKSQIRESLIE 448
>gi|427429668|ref|ZP_18919655.1| ATP-dependent RNA helicase RhlE [Caenispirillum salinarum AK4]
gi|425879905|gb|EKV28606.1| ATP-dependent RNA helicase RhlE [Caenispirillum salinarum AK4]
Length = 469
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 125/230 (54%), Gaps = 43/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L+ L+K++ G++ PTPIQ IP G+D++G A+TG+GKT AF LP++Q
Sbjct: 4 FTDLGLNESLLKALAEDGYETPTPIQAKAIPLLL-DGRDVLGIAQTGTGKTAAFALPMLQ 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL++ +AG PKG RALI+TPTRELA+Q+ D +K + + R
Sbjct: 63 RLMDSNRRAG--------------PKG-CRALILTPTRELAVQINDSIKSYGRHLRHRTA 107
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ Q R L +L++ TPGRL +LM+ G V + FVLDEADRM++
Sbjct: 108 CIFGGVGMNPQIRALSGGVDLLIATPGRLIDLMNQG---YVRFDKVEEFVLDEADRMLDM 164
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G R+++ ++D LP R TL+FSAT+
Sbjct: 165 GFVRDVRKVVDRLP------------------------GDRHTLLFSATM 190
>gi|297850038|ref|XP_002892900.1| hypothetical protein ARALYDRAFT_471825 [Arabidopsis lyrata subsp.
lyrata]
gi|297338742|gb|EFH69159.1| hypothetical protein ARALYDRAFT_471825 [Arabidopsis lyrata subsp.
lyrata]
Length = 487
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 130/249 (52%), Gaps = 49/249 (19%)
Query: 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111
LG ++PTP+Q C+P G+D++G A+TGSGKT AF LPI+ RL E+
Sbjct: 72 LGMRKPTPVQTHCVPKIL-AGRDVLGLAQTGSGKTAAFALPILHRLAED----------- 119
Query: 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK 171
P G AL++TPTRELA Q+ + K + +N+R IVGGM Q R L
Sbjct: 120 --------PYGVF-ALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTRSLV 170
Query: 172 ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231
+RP +V+ TPGR+ L+ F VLDEADR+++ G EL++I LP
Sbjct: 171 SRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLP-- 228
Query: 232 NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK--LKQSVNGL 289
K RQTL+FSAT ++++ + L+H S K ++ GL
Sbjct: 229 ----------------------KSRQTLLFSAT--MTSNLQTLLEHSSNKAYFYEAYEGL 264
Query: 290 NSIETLSER 298
+++TL+++
Sbjct: 265 KTVDTLTQQ 273
>gi|262066543|ref|ZP_06026155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium
periodonticum ATCC 33693]
gi|291379777|gb|EFE87295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium
periodonticum ATCC 33693]
Length = 528
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 116/190 (61%), Gaps = 24/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRELGLGEKILKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------------ENFEHSDHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +FVLDEAD M+
Sbjct: 109 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFVLDEADEMLNM 165
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 166 GFVEDIEKIL 175
>gi|449692609|ref|XP_004213103.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like, partial
[Hydra magnipapillata]
Length = 208
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 126/242 (52%), Gaps = 47/242 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L LH L K +G +PT IQ +CIP G+D IG+A+TGSGKT AF LPI+Q
Sbjct: 5 FTDLGLHEWLNKQCLEMGISKPTEIQVSCIPEIL-SGRDCIGSAKTGSGKTAAFALPIIQ 63
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L E+ P G + ALI+TPTRELA+Q+ D K + K I +
Sbjct: 64 KLSED-------------------PYG-IFALILTPTRELAIQIADQFKALGKSIGLNDA 103
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I+GG+ KQ L +P +V+ TPGRL ++ G K L+ + F VLDEADR++E
Sbjct: 104 VIIGGLDMVKQGMELSNQPHVVIATPGRLASHITSGTK--FSLNKIKFLVLDEADRLLEK 161
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275
+L+ I D + KKRQTL+FSATI + + K++
Sbjct: 162 SFENDLEVIFDNIA------------------------KKRQTLLFSATITDAINHLKEV 197
Query: 276 KH 277
H
Sbjct: 198 AH 199
>gi|358467620|ref|ZP_09177312.1| hypothetical protein HMPREF9093_01792 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357067539|gb|EHI77649.1| hypothetical protein HMPREF9093_01792 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 529
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 118/190 (62%), Gaps = 23/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRELGLGEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK E E H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------EKFETTEH-----HIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 109
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +FVLDEAD M+
Sbjct: 110 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFVLDEADEMLNM 166
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 167 GFVEDIEKIL 176
>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
Length = 499
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 130/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L P ++KSI R+GF+E TPIQ IP + +GKDIIG A+TG+GKT AFG+P+++
Sbjct: 4 FSELNLSPSMLKSINRMGFEEATPIQAGTIPLSL-EGKDIIGQAQTGTGKTAAFGIPLVE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + +++ LII PTRELA+QV++ L +V VRV+
Sbjct: 63 KIDTK--------------------NTNVQGLIIAPTRELAIQVSEELYKVGYDKRVRVL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R +K P ++VGTPGRL + ++ L ++HTL VLDEAD M+
Sbjct: 103 AVYGGQDINRQIRAMKKGPHIIVGTPGRLLDHINRRTLKLDQVHTL---VLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++SI+ +P EG RQTL+FSAT+
Sbjct: 160 GFIDDIESILKNVP------EG------------------RQTLLFSATM 185
>gi|198474199|ref|XP_001356589.2| GA10248 [Drosophila pseudoobscura pseudoobscura]
gi|198138291|gb|EAL33653.2| GA10248 [Drosophila pseudoobscura pseudoobscura]
Length = 828
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 146/238 (61%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +WNE P ++ I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKTLA
Sbjct: 395 IPNPIRSWNESGFPPEIIDIIDKVGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLA 453
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ + + K+ E+ E+ ++ P A+I+ PTRELA Q+ + + +
Sbjct: 454 FLIPLLSWI----QSLPKI--ERLEDVDQ-GPY----AIIMAPTRELAQQIEEETIKFGQ 502
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VLDE
Sbjct: 503 PLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVLDE 559
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATI 265
ADRMI+ G ++Q I++ +P+TN + + + + + + +KK RQT++F+AT+
Sbjct: 560 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDENKLMENFYTKKKYRQTVMFTATM 617
>gi|342218233|ref|ZP_08710855.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
gi|341590668|gb|EGS33904.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
Length = 515
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 131/233 (56%), Gaps = 46/233 (19%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
+ + L + +++++ +GF+EPTPIQ IP A QG+D+IG A+TG+GKT AFG+P
Sbjct: 2 LEKFQNLNISTTILQALNTMGFEEPTPIQAEAIPVAL-QGQDMIGQAQTGTGKTAAFGIP 60
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+++++L + + +++ ++++PTRELA+QV + L +A+ ++
Sbjct: 61 VLEKILASSKTS------------------NVQTIVLSPTRELAMQVAEELNHLAQYTSI 102
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ +PI GG E+Q R L+ P+++V TPGRL + M G HL E+ T+ VLDEAD M
Sbjct: 103 QALPIYGGQDMERQLRRLRKHPQIIVATPGRLIDHMKRGTIHLDEISTI---VLDEADEM 159
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ G ++ +I+ P T RQTL+FSAT+
Sbjct: 160 LDMGFIDDIHTIMSATPET------------------------RQTLLFSATM 188
>gi|354489656|ref|XP_003506977.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Cricetulus griseus]
gi|344257276|gb|EGW13380.1| ATP-dependent RNA helicase DDX24 [Cricetulus griseus]
Length = 853
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 119/214 (55%), Gaps = 23/214 (10%)
Query: 100 EREKAGKMLEEKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
+ E+AGK+ + + Y P+ L L++TPTRELA+QV H+ VAK ++ +
Sbjct: 357 DEEQAGKLKQGLCDRIAIYRVHPRRPLLGLVLTPTRELAVQVRQHIDAVAKFTGIKTAIL 416
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
VGGMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GH
Sbjct: 417 VGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGH 476
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277
F EL +++ML N+ Q RQTLVFSAT+ L ++ H
Sbjct: 477 FAELSQLLEML------NDSQYNPN-------------RQTLVFSATLTLVHQVPARILH 517
Query: 278 GSLKLKQSVNGLNSIETLSERAGMRANVAIVDLT 311
K + ++ ++ L ++ GMR ++DLT
Sbjct: 518 K--KHVKKMDKTTKLDLLMQKIGMRGKPKVIDLT 549
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
VS P A+ + + + AW +L + +++++ LGF PTPIQ +P A
Sbjct: 173 VSKVPKKAKTWMPEVQDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLPPAIRD 232
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLE 99
DI+GAAETGSGKTLAF +P++ +L+
Sbjct: 233 KLDILGAAETGSGKTLAFAIPMIHAVLQ 260
>gi|358053682|ref|ZP_09147418.1| putative helicase [Staphylococcus simiae CCM 7213]
gi|357256869|gb|EHJ07190.1| putative helicase [Staphylococcus simiae CCM 7213]
Length = 507
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 130/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGVSDNTVQTLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G NV+VV
Sbjct: 62 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQNVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P ++RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPA-----------------------QQRQTMLFSATM 185
>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
gi|448236523|ref|YP_007400581.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
gi|445205365|gb|AGE20830.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
Length = 467
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L +MK+I R+GF+E TPIQ IP + Q KD+IG A+TG+GKT AFG+PI++
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSL-QNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ G ++AL++ PTRELA+QV++ L ++ VRV+
Sbjct: 63 KV--------------------DVKNGAIQALVVAPTRELAIQVSEELYKIGAVKRVRVL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG E+Q R LK P ++VGTPGR+ + ++ G L +HT+ VLDEAD M+
Sbjct: 103 PIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTV---VLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P +RQTL+FSAT+
Sbjct: 160 GFIEDIEAILSHVPA------------------------ERQTLLFSATM 185
>gi|412987541|emb|CCO20376.1| predicted protein [Bathycoccus prasinos]
Length = 843
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 131/249 (52%), Gaps = 61/249 (24%)
Query: 27 AEISTEFDA--WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
A+ T F A +N+L L L ++ +LG+ PTPIQ A IP A G+D+ G A+TGSG
Sbjct: 201 AKDGTTFSAQCFNDLHLSRPLCRACEKLGYATPTPIQAAIIPIAL-TGRDVCGRAQTGSG 259
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL---IITPTRELALQVTD 141
KT AF LP+++R+L + PK + A+ I+ PTRELA+Q
Sbjct: 260 KTAAFALPLLERML-------------------HRPKNAVSAIHVVIMVPTRELAVQCAQ 300
Query: 142 HLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
++ + + NV+V IVGG+S E+Q L+ RPE+VV TPGRL + H+ H+
Sbjct: 301 MIQRLGEYTNVQVATIVGGLSMERQAAALRQRPEIVVATPGRLID-------HVRNTHSF 353
Query: 202 SF-----FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
F VLDEADR++E G E++ I+ +P ++R
Sbjct: 354 GFEDVAAVVLDEADRLLEMGFLEEIKEIVRNMP------------------------RQR 389
Query: 257 QTLVFSATI 265
QTL+FSAT+
Sbjct: 390 QTLLFSATL 398
>gi|452819711|gb|EME26765.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 414
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 128/232 (55%), Gaps = 46/232 (19%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ EL L ++++ L +PTP Q ACIP + GKDIIG++ETG+GKT++F LPI+
Sbjct: 14 SFEELGLGQWIVETCKALNIMKPTPCQVACIPQTLN-GKDIIGSSETGTGKTMSFVLPIV 72
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+L P G + A+++TPTRELA Q+ D K + +++RV
Sbjct: 73 DKL-------------------SVDPCG-VFAIVLTPTRELAFQIYDQFKAIGNPMSIRV 112
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK-HLVELHTLSFFVLDEADRMI 213
+VGG+ + +Q L+ RP +VV TPGRL +L + + LH++ F VLDEADR++
Sbjct: 113 AVVVGGLESIRQATELENRPHVVVATPGRLADLFTIEDSVERFHLHSIRFLVLDEADRLL 172
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
E+G L +I+D+LP+ RQTLV+SAT+
Sbjct: 173 EDGFASSLSTILDVLPV------------------------NRQTLVYSATM 200
>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
Length = 471
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 130/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+NE L P LMK++ ++GF+E TPIQ A IP + Q +D+IG A+TG+GKT AFG+P+++
Sbjct: 7 FNEFGLSPELMKAVSKMGFEEATPIQAATIPLSL-QNRDVIGQAQTGTGKTAAFGIPLIE 65
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + +A ++A+++ PTRELA+QV++ L ++ VRV+
Sbjct: 66 KI------------DMNNDA--------VQAIVVAPTRELAIQVSEELYKIGSTKRVRVL 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG E+Q R LK P ++VGTPGR+ + + L +HT+ VLDEAD M+
Sbjct: 106 PIYGGQDIERQIRALKKHPHIIVGTPGRILDHIQRRTLRLQHVHTV---VLDEADEMLNM 162
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P +RQTL+FSAT+
Sbjct: 163 GFVEDIEAILSHVPT------------------------ERQTLLFSATM 188
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 130/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L P ++K++ R+GF+E +PIQ A IP QGKDIIG A+TG+GKT AFG+P+++
Sbjct: 4 FSELNLSPAILKAVKRMGFEEASPIQAATIPLTM-QGKDIIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + R + +++ +II PTRELA+QV++ L + + V V+
Sbjct: 63 KI-DHRSR-------------------NIQGIIIAPTRELAIQVSEELYRIGQYSRVHVL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK P+++VGTPGR+ + + G L +HTL VLDEAD M+
Sbjct: 103 AVYGGQDISRQIRALKNHPQIIVGTPGRILDHIHRGTLKLDHVHTL---VLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P K RQT++FSAT+
Sbjct: 160 GFIDDIEAILSTVP------------------------KDRQTMLFSATM 185
>gi|156391217|ref|XP_001635665.1| predicted protein [Nematostella vectensis]
gi|156222761|gb|EDO43602.1| predicted protein [Nematostella vectensis]
Length = 777
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 140/230 (60%), Gaps = 15/230 (6%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E ++ +++ + +LG+K+PTPIQ+ IP Q +DIIG AETGSGKT AF +P++
Sbjct: 352 WKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAAFAIPLLV 410
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ G E+ +A++ P ALI+ PTRELA Q+ + + + + + +R V
Sbjct: 411 WIM------GLPKIERDNDADQ-GP----YALILAPTRELAQQIEEEILKFGRPLGIRTV 459
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
++GG+S E Q L+ E+V+ TPGRL +++ ++LV L+ S+ V+DEADRMI+
Sbjct: 460 SVIGGLSREDQGFQLRLGVEIVIATPGRLIDVLEN--RYLV-LNRCSYIVMDEADRMIDM 516
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G E+Q I++ LP++N + + + + + K RQT++F+AT+
Sbjct: 517 GFEPEVQKILEHLPVSNVKPDSEDSEDPEHLLTHMGKDKYRQTVMFTATM 566
>gi|399055613|ref|ZP_10743308.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398046822|gb|EJL39406.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 529
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 127/230 (55%), Gaps = 49/230 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++ LH ++++I+ +GF+EP+PIQ ACIP G D+IG A+TG+GKT AFG+P++
Sbjct: 4 FSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVL-AGGDLIGQAQTGTGKTAAFGIPLV- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK P ++A+++TPTRELA+QV L ++K VR +
Sbjct: 62 --------------------EKITPANRVQAIVLTPTRELAIQVAGELLRISKYNKVRTL 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG S Q R L+ ++VVGTPGR+ + + L +HTL VLDEAD M++
Sbjct: 102 PIYGGQSIGHQIRALRQGVQIVVGTPGRVMDHLRRKTLKLDHVHTL---VLDEADEMLDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++II +P ++RQTL+FSAT+
Sbjct: 159 GFIEDIETIITHMP------------------------EERQTLLFSATM 184
>gi|444379626|ref|ZP_21178803.1| ATP-dependent RNA helicase [Enterovibrio sp. AK16]
gi|443676355|gb|ELT83059.1| ATP-dependent RNA helicase [Enterovibrio sp. AK16]
Length = 410
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 123/224 (54%), Gaps = 46/224 (20%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
LHP L +++ LG+ EPT IQ+ IP +GKD++GAA+TG+GKT AF LP++ +LLE
Sbjct: 9 LHPTLQQTLSELGYSEPTDIQQQAIPKVL-EGKDVMGAAQTGTGKTAAFTLPLIHQLLER 67
Query: 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG 160
KG R LI+TPTRELA QV D + E + +++ V + GG
Sbjct: 68 ------------------GVKGSARVLIVTPTRELAQQVYDKVAEYGQHTSLKCVALYGG 109
Query: 161 MSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 220
+ Q+ L +PE++VGTPGRL + + G ++L++L VLDEADRM++ G +
Sbjct: 110 ANINPQKNQLAKKPEIIVGTPGRLLDHLHIGT---LQLNSLDTLVLDEADRMLDMGFISD 166
Query: 221 LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
++ ++ +P K+RQTL FSAT
Sbjct: 167 IKRLMKKMP------------------------KERQTLFFSAT 186
>gi|227206264|dbj|BAH57187.1| AT4G16630 [Arabidopsis thaliana]
Length = 617
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 131/239 (54%), Gaps = 48/239 (20%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
+S D + EL L L+++ LG+K+PTPIQ ACIP A G+D+ +A TGSGKT A
Sbjct: 100 VSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLAL-TGRDLCASAITGSGKTAA 158
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL--RALIITPTRELALQVTDHLKEV 146
F LP ++RLL + PK R LI+TPTRELA+Q+ ++ +
Sbjct: 159 FALPTLERLL-------------------FRPKRVFATRVLILTPTRELAVQIHSMIQNL 199
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
A+ +++ IVGG+S +QE +L++ P++VV TPGR+ + + V+L L+ +L
Sbjct: 200 AQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMS--VDLDDLAVLIL 257
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
DEADR+++ G E+ ++ + P K+RQT++FSAT+
Sbjct: 258 DEADRLLQTGFATEITELVRLCP------------------------KRRQTMLFSATM 292
>gi|340717162|ref|XP_003397056.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX24-like [Bombus terrestris]
Length = 766
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 120/207 (57%), Gaps = 25/207 (12%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
L ALI+TPTRELA+Q+ DHL + K +++V ++GGM+ KQER+L PE+V+ TPGR
Sbjct: 286 LYALILTPTRELAIQIKDHLTKAIKYTDIKVAVVLGGMAAVKQERILSKGPEIVIATPGR 345
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
LWEL+ G HL ++ ++ + +DE DRM+E GHF+ELQ +++ + M NE + E+
Sbjct: 346 LWELIQQGNPHLSKVDSIKYLAIDETDRMLEKGHFQELQQLLEKINM----NEKKVEE-- 399
Query: 244 TCVTVSSLQRKKRQTLVFSATIALSADF-----RKKLKHGSLKLKQSVNGLNSIETLSER 298
RQT VFSAT+ + D + K KH K+ Q + ++ + E
Sbjct: 400 ------------RQTFVFSATLTMVHDIPEYLEKXKRKHTKSKI-QKLTPAQKLQKIMEL 446
Query: 299 AGMRANVAIVDLTNVSVLANKLEESFI 325
G++ N I+D+T S A L E I
Sbjct: 447 VGIK-NPKIIDVTKKSGTATNLTECRI 472
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 11 VVSNGPDDAEEELVSEAEISTEFDA--WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA 68
+ N D E + + DA W L + ++K++ F EPTPIQ +P A
Sbjct: 118 ISPNNNDQFSNECNKDKNDVYDIDAQQWYMLGVPTPVIKALKDQQFHEPTPIQALTLPPA 177
Query: 69 AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE-EKGEE 114
+DI+GAAETGSGKTLAFG+PI+ +LE + K + + E GEE
Sbjct: 178 ILGHRDILGAAETGSGKTLAFGIPIINGILELKNKQSQQSDMEFGEE 224
>gi|255718883|ref|XP_002555722.1| KLTH0G15840p [Lachancea thermotolerans]
gi|238937106|emb|CAR25285.1| KLTH0G15840p [Lachancea thermotolerans CBS 6340]
Length = 797
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 110/325 (33%), Positives = 158/325 (48%), Gaps = 56/325 (17%)
Query: 16 PDDAEEELVSEAEISTEFDAWNE-LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKD 74
PD+ E +L+ + W E + L ++ + GF +PT IQ IP A +GKD
Sbjct: 212 PDNVEPDLLPQ---------WTETMNLSMTTLQGLAAQGFTKPTDIQSMTIPPAL-EGKD 261
Query: 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134
I+G A TGSGKTLA+G+PI++RL+ +R + LI TPTRE
Sbjct: 262 IMGKASTGSGKTLAYGIPILERLVADRTTDKTV------------------GLIFTPTRE 303
Query: 135 LALQVTDHLKEVA----KGINVRVVPIVGGMSTEKQERLLKAR--PELVVGTPGRLWELM 188
LA QVT HL+++A K ++ + GG+S +KQERLLK +VV TPGR E++
Sbjct: 304 LAHQVTQHLQKLACVIIKKSPYAIISLTGGLSIQKQERLLKYDGCARIVVATPGRFLEML 363
Query: 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTV 248
K + VLDE DR++++GHF E I+ L G++ + V
Sbjct: 364 ERDPKLIDRFSQTDCLVLDEVDRLLQDGHFEEFDKILKHL--------GKARNMKKKVK- 414
Query: 249 SSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLN-------SIETLSERAGM 301
S QT+VFSAT S D KL S K V G S++ L +
Sbjct: 415 SEFAGTGWQTMVFSAT--FSVDLFNKLSTTSWK---KVGGGKDDDEMELSLKHLMTKIHF 469
Query: 302 RANVAIVDLTNVSVLANKLEESFIE 326
R+ I+D + +K++ES IE
Sbjct: 470 RSKPVIIDADPDHKIHSKIKESLIE 494
>gi|40018540|ref|NP_954550.1| ATP-dependent RNA helicase DDX24 [Rattus norvegicus]
gi|33638101|gb|AAQ24160.1| DEAD box polypeptide 24 [Rattus norvegicus]
gi|67677909|gb|AAH97262.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Rattus norvegicus]
gi|149025406|gb|EDL81773.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Rattus norvegicus]
Length = 851
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 119/214 (55%), Gaps = 23/214 (10%)
Query: 100 EREKAGKMLEEKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
+ E+AGK+ +E ++ Y P+ L L++TPTRELA+QV H+ VAK + +
Sbjct: 356 DEEQAGKLKQELCDQIAVYKVHPRRPLLGLVLTPTRELAVQVRQHIDAVAKFTGINTAIL 415
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
VGGMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E H
Sbjct: 416 VGGMSTQKQQRMLNRHPEIVIATPGRLWELIKEKHPHLSNLRQLRCLVIDEADRMVEKDH 475
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277
F EL +++ML N+ Q RQTLVFSAT+ L ++ H
Sbjct: 476 FAELSQLLEML------NDSQYNPN-------------RQTLVFSATLTLVHQAPARILH 516
Query: 278 GSLKLKQSVNGLNSIETLSERAGMRANVAIVDLT 311
K + ++ ++ L ++ GMR ++DLT
Sbjct: 517 K--KHVKKMDKTAKLDLLMQKIGMRGKPKVIDLT 548
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 190 DVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 249
Query: 92 PIMQRLLE 99
P++ +L+
Sbjct: 250 PMIHSVLQ 257
>gi|294142025|ref|YP_003558003.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 427
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 127/230 (55%), Gaps = 35/230 (15%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++ L L P L++ + LG+ +PTPIQ IPA G+DI+ A+TGSGKT AF LPI+
Sbjct: 13 FSSLSLRPELLQVLTELGYTQPTPIQTQAIPAIL-AGQDIMAGAQTGSGKTAAFALPILN 71
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L ++ +K EA+ A K +RAL++TPTRELALQV + AK V+
Sbjct: 72 KL------TAQICLQK-TEAQDSADKPAIRALVLTPTRELALQVHGSFVKYAKLTQVKSA 124
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG+S + Q ++L A +++V TPGRL + + G + L+ L F V DEADRM++
Sbjct: 125 LVYGGVSIDAQAQILAAGVDILVATPGRLLDHLRRGS---LNLNQLEFLVFDEADRMLDM 181
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G E+ +I+ LP K RQTL+FSAT
Sbjct: 182 GFKDEIDAIVKQLP------------------------KTRQTLLFSATF 207
>gi|433545971|ref|ZP_20502309.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
gi|432182587|gb|ELK40150.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
Length = 549
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 127/230 (55%), Gaps = 49/230 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++ LH ++++I+ +GF+EP+PIQ ACIP G D+IG A+TG+GKT AFG+P++
Sbjct: 24 FSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVL-AGGDLIGQAQTGTGKTAAFGIPLV- 81
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK P ++A+++TPTRELA+QV L ++K VR +
Sbjct: 82 --------------------EKITPANRVQAIVLTPTRELAIQVAGELLRISKYNKVRTL 121
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG S Q R L+ ++VVGTPGR+ + + L +HTL VLDEAD M++
Sbjct: 122 PIYGGQSIGHQIRALRQGVQIVVGTPGRVMDHLRRKTLKLDHVHTL---VLDEADEMLDM 178
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++II +P ++RQTL+FSAT+
Sbjct: 179 GFIEDIETIITHMP------------------------EERQTLLFSATM 204
>gi|241957775|ref|XP_002421607.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
[Candida dubliniensis CD36]
gi|223644951|emb|CAX40951.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
[Candida dubliniensis CD36]
Length = 592
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 135/253 (53%), Gaps = 48/253 (18%)
Query: 16 PDDAEEELVSEAEISTE--FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
P+D EE+ + E ST ++ L+L ++K I L F +PTPIQ A IP A GK
Sbjct: 94 PEDTPEEIANFYEQSTHQSHTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIAL-LGK 152
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133
DI+ A+TGSGKT A+ +PI++RLL Y P + +I+TPTR
Sbjct: 153 DIVAGAQTGSGKTGAYMIPIIERLL-------------------YKPSTSTKVIILTPTR 193
Query: 134 ELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192
ELALQV + K+++ + N+ + VGG++ +QE LK RP++V+ TPGRL + +
Sbjct: 194 ELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSP 253
Query: 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQ 252
V+ + V+DEADRM+E G EL I+ ++P
Sbjct: 254 SFSVQ--DIQVLVIDEADRMLEEGFQEELTEILSLIP----------------------- 288
Query: 253 RKKRQTLVFSATI 265
+ KRQTL+FSAT+
Sbjct: 289 KHKRQTLLFSATM 301
>gi|195388290|ref|XP_002052813.1| GJ17767 [Drosophila virilis]
gi|194149270|gb|EDW64968.1| GJ17767 [Drosophila virilis]
Length = 835
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 147/240 (61%), Gaps = 16/240 (6%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
+I +WNE P +++ I +G+KEPTPIQ+ IP Q +DIIG AETGSGKT
Sbjct: 400 GKIPNPIRSWNESGFPPEIIEIIDTVGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKT 458
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
LAF +P++ + + K+ E+ E+ ++ P A+I+ PTRELA Q+ + +
Sbjct: 459 LAFLIPLLSWI----QSLPKI--ERLEDVDQ-GPY----AIIMAPTRELAQQIEEETIKF 507
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
+ + +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VL
Sbjct: 508 GQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVL 564
Query: 207 DEADRMIENGHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
DEADRMI+ G ++Q I++ +P+TN + ++E + + ++K RQT++F+AT+
Sbjct: 565 DEADRMIDMGFEPDVQKILEYMPVTNLKPDSEEAEDEKKLMENFYTKKKYRQTVMFTATM 624
>gi|257867061|ref|ZP_05646714.1| helicase [Enterococcus casseliflavus EC30]
gi|257873396|ref|ZP_05653049.1| helicase [Enterococcus casseliflavus EC10]
gi|257877139|ref|ZP_05656792.1| helicase [Enterococcus casseliflavus EC20]
gi|257801117|gb|EEV30047.1| helicase [Enterococcus casseliflavus EC30]
gi|257807560|gb|EEV36382.1| helicase [Enterococcus casseliflavus EC10]
gi|257811305|gb|EEV40125.1| helicase [Enterococcus casseliflavus EC20]
Length = 507
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 132/255 (51%), Gaps = 55/255 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L L+ S+ R GF+E TPIQ+A IP A GKD+IG A+TG+GKT AFGLP++
Sbjct: 3 FKDLELSNELLTSVERAGFEEATPIQEATIPLAL-AGKDVIGQAQTGTGKTAAFGLPML- 60
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRV 154
EK P H L+ L+I PTRELA+Q + L + K +RV
Sbjct: 61 --------------------EKIDPTNHQLQGLVIAPTRELAIQTQEELYRLGKDKKIRV 100
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 101 QAVYGGADIGRQIRQLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVETLVLDEADEMLN 157
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSA 269
G +++ II +P RQTL+FSAT+ +
Sbjct: 158 MGFLEDIEKIISQVPDV------------------------RQTLLFSATMPPAIKNIGV 193
Query: 270 DFRKKLKHGSLKLKQ 284
F K+ +H +K K+
Sbjct: 194 KFMKEPEHVQIKAKE 208
>gi|386332888|ref|YP_006029057.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334195335|gb|AEG68520.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 495
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 134/258 (51%), Gaps = 48/258 (18%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
S FD + LHP +++++ G+ PTPIQ A IP G+D++GAA+TG+GKT F
Sbjct: 14 SVTFDTFG---LHPDILRALTESGYTRPTPIQAAAIPVVVG-GRDVMGAAQTGTGKTAGF 69
Query: 90 GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAK 148
LPI+Q LL E + +P H +RALI+TPTRELA QV D++ + AK
Sbjct: 70 SLPIIQNLLPEANTSA-------------SPARHPVRALILTPTRELADQVYDNVAKYAK 116
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+R + GG+ Q L+ E++V TPGRL + + ++ V L + VLDE
Sbjct: 117 YTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV---QQRSVNLSQVRMLVLDE 173
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADRM++ G +LQ II++LP RQTL+FSAT +
Sbjct: 174 ADRMLDMGFLPDLQRIINLLP------------------------AHRQTLLFSATFSPE 209
Query: 269 ADFRKKLKHGSLKLKQSV 286
KKL L+ Q++
Sbjct: 210 I---KKLAASYLRHPQTI 224
>gi|195579916|ref|XP_002079802.1| GD24145 [Drosophila simulans]
gi|194191811|gb|EDX05387.1| GD24145 [Drosophila simulans]
Length = 641
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 146/238 (61%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +WNE ++ I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKTLA
Sbjct: 208 IPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLA 266
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ + + K+ E+ E+ ++ P A+I+ PTRELA Q+ + + +
Sbjct: 267 FLIPLLSWI----QSLPKI--ERLEDVDQ-GP----YAIIMAPTRELAQQIEEETTKFGQ 315
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VLDE
Sbjct: 316 PLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVLDE 372
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATI 265
ADRMI+ G ++Q I++ +P+TN + + + +T + + +KK RQT++F+AT+
Sbjct: 373 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATM 430
>gi|16768302|gb|AAL28370.1| GM01081p [Drosophila melanogaster]
Length = 641
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 146/238 (61%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +WNE ++ I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKTLA
Sbjct: 208 IPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLA 266
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ + + K+ E+ E+ ++ P A+I+ PTRELA Q+ + + +
Sbjct: 267 FLIPLLSWI----QSLPKI--ERLEDVDQ-GP----YAIIMAPTRELAQQIEEETTKFGQ 315
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VLDE
Sbjct: 316 PLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVLDE 372
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATI 265
ADRMI+ G ++Q I++ +P+TN + + + +T + + +KK RQT++F+AT+
Sbjct: 373 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATM 430
>gi|421145364|ref|ZP_15605243.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
gi|395488237|gb|EJG09113.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
Length = 528
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 116/190 (61%), Gaps = 24/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------------ENFENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +F+LDEAD M+
Sbjct: 109 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFILDEADEMLNM 165
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 166 GFIEDIEKIL 175
>gi|328956797|ref|YP_004374183.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4]
gi|328673121|gb|AEB29167.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4]
Length = 423
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 127/230 (55%), Gaps = 44/230 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+NEL L+ L+ ++ G+ + TPIQ+ IP + KD++G A+TG+GKT AF LPI+Q
Sbjct: 3 FNELELNQHLLHALKEAGYTKATPIQEDAIPHLMN-NKDLLGCAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++EE K KG ++ALI+ PTRELA+Q+ D + AK + + +
Sbjct: 62 NIMEE----------------KTIGKGAIKALILAPTRELAIQIGDSFQTYAKYLPLNIQ 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S Q LK +++V TPGRL +L+ G V+L+ + FFVLDEAD M++
Sbjct: 106 VIFGGVSQNPQTATLKRGTDILVATPGRLLDLIRQG---FVKLNQVDFFVLDEADMMLDM 162
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G R+++ II LP KKRQ++ FSAT+
Sbjct: 163 GMLRDVRHIIRELP------------------------KKRQSMFFSATM 188
>gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
12755]
gi|420263005|ref|ZP_14765645.1| cold-shock DEAD box protein A [Enterococcus sp. C1]
gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
12755]
gi|394769969|gb|EJF49787.1| cold-shock DEAD box protein A [Enterococcus sp. C1]
Length = 508
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 132/255 (51%), Gaps = 55/255 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L L+ S+ R GF+E TPIQ+A IP A GKD+IG A+TG+GKT AFGLP++
Sbjct: 3 FKDLELSNELLTSVERAGFEEATPIQEATIPLAL-AGKDVIGQAQTGTGKTAAFGLPML- 60
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRV 154
EK P H L+ L+I PTRELA+Q + L + K +RV
Sbjct: 61 --------------------EKIDPANHQLQGLVIAPTRELAIQTQEELYRLGKDKKIRV 100
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG +Q R LK RP +VVGTPGR+ + ++ +H ++L T+ VLDEAD M+
Sbjct: 101 QAVYGGADIGRQIRQLKDRPHIVVGTPGRMLDHIN---RHTLKLGTVETLVLDEADEMLN 157
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSA 269
G +++ II +P RQTL+FSAT+ +
Sbjct: 158 MGFLEDIEKIISQVPDV------------------------RQTLLFSATMPPAIKNIGV 193
Query: 270 DFRKKLKHGSLKLKQ 284
F K+ +H +K K+
Sbjct: 194 KFMKEPEHVQIKAKE 208
>gi|195344854|ref|XP_002038991.1| GM17282 [Drosophila sechellia]
gi|194134121|gb|EDW55637.1| GM17282 [Drosophila sechellia]
Length = 822
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 146/238 (61%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +WNE ++ I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKTLA
Sbjct: 389 IPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLA 447
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ + + K+ E+ E+ ++ P A+I+ PTRELA Q+ + + +
Sbjct: 448 FLIPLLSWI----QSLPKI--ERLEDVDQ-GPY----AIIMAPTRELAQQIEEETTKFGQ 496
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VLDE
Sbjct: 497 PLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVLDE 553
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATI 265
ADRMI+ G ++Q I++ +P+TN + + + +T + + +KK RQT++F+AT+
Sbjct: 554 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYSKKKYRQTVMFTATM 611
>gi|302792278|ref|XP_002977905.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
gi|300154608|gb|EFJ21243.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
Length = 741
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 139/252 (55%), Gaps = 50/252 (19%)
Query: 18 DAEEELVSEAEISTEFDAWN--ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
D+++E + F+A + EL + L+++ LG+++PTPIQ ACIP A G+DI
Sbjct: 97 DSKKEKFFSSNHGASFNASSFIELNVSRPLLRACDALGYRQPTPIQAACIPLAL-AGRDI 155
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTR 133
G+A TGSGKT AF LPI++RLL + P+ +R LIITPTR
Sbjct: 156 CGSAVTGSGKTAAFALPILERLL-------------------FRPRRIPAIRVLIITPTR 196
Query: 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193
ELA+Q+ ++++A+ ++R +VGG+S++ QE L+ P++VV TPGR+ + + +
Sbjct: 197 ELAVQLHSMIEKLAQFTDIRCCLVVGGLSSKVQEVALRTHPDIVVATPGRMIDHLRNTQS 256
Query: 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQR 253
V L L+ VLDEADR++E G E+ ++ + P
Sbjct: 257 --VGLEELAILVLDEADRLLELGFREEIHELVKLCP------------------------ 290
Query: 254 KKRQTLVFSATI 265
+RQT++FSAT+
Sbjct: 291 SRRQTMLFSATM 302
>gi|442314863|ref|YP_007356166.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-2]
gi|441483786|gb|AGC40472.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-2]
Length = 376
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 130/233 (55%), Gaps = 45/233 (19%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
F + +L L ++K+I G+ PT IQ+ IP +G+D+IG A+TG+GKT AF +P
Sbjct: 5 FMNFTQLSLSSPILKAISDAGYTTPTAIQEKAIPTIL-EGRDLIGCAQTGTGKTAAFSIP 63
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
++Q +L E K GK +RALI+TPTRELA+Q+ +++++ +K +N+
Sbjct: 64 LLQ-ILSETPKKGK----------------SVRALILTPTRELAIQIQENIEQYSKFLNI 106
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ + I GG+ KQER L ++++ TPGRL +LM G L+ L + VLDEADRM
Sbjct: 107 KHLSIFGGVPQGKQERALNQGVDILIATPGRLLDLMQQG---LLSLSQIEILVLDEADRM 163
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ G +++ I+ +P KKRQTL FSAT+
Sbjct: 164 LDMGFVNDVKKILTKVP------------------------KKRQTLFFSATM 192
>gi|332374708|gb|AEE62495.1| unknown [Dendroctonus ponderosae]
Length = 470
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 121/223 (54%), Gaps = 23/223 (10%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
++ E +++L+L ++K + +G K PTPIQ CIP +GK IGAA+TGSGKTLA
Sbjct: 1 MAEELSNFSQLKLQNWIVKQCHSIGVKRPTPIQANCIPKIL-EGKTCIGAAKTGSGKTLA 59
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F LPI+Q+L E+ P G + AL++TP RELA Q+ D + K
Sbjct: 60 FALPIVQKLYED-------------------PYG-IYALVLTPIRELAFQIADQFAILGK 99
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+N+R +VGGM +Q R L P +VV TPGRL + + G + L + F V+DE
Sbjct: 100 PMNMRTCVVVGGMDMVEQGRQLSKVPHVVVATPGRLVDHLEGCDTF--TLSRIKFLVIDE 157
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251
ADR++ +++ I +LP T S + T T T+ L
Sbjct: 158 ADRLLGGLFDDQIKRIFSVLPKTRQSIYFSATMTDTLQTLKKL 200
>gi|392970003|ref|ZP_10335412.1| probable DEAD-box ATP-dependent RNA helicase [Staphylococcus
equorum subsp. equorum Mu2]
gi|403046049|ref|ZP_10901524.1| ATP-dependent RNA helicase [Staphylococcus sp. OJ82]
gi|392511931|emb|CCI58617.1| probable DEAD-box ATP-dependent RNA helicase [Staphylococcus
equorum subsp. equorum Mu2]
gi|402764211|gb|EJX18298.1| ATP-dependent RNA helicase [Staphylococcus sp. OJ82]
Length = 507
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 131/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L + +++ +GF + TPIQK IP A +GKD++G A+TG+GKT AFG+P++
Sbjct: 4 FKELGLSDKMAETLASMGFDDATPIQKESIPLAL-EGKDVLGQAQTGTGKTGAFGIPLV- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK A K +++LI+ PTRELA+QV + ++E AKG NV+VV
Sbjct: 62 --------------------EKVADKEGVQSLILAPTRELAMQVAESIREFAKGQNVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM ++Q + LK P++VVGTPGR+ + ++ ++HTL +LDEAD M+
Sbjct: 102 TVFGGMPIDRQIKSLKKGPQIVVGTPGRVIDHLNRRTLKTNDVHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P + +RQT++FSAT+
Sbjct: 159 GFIDDMKFIMDKIPAS-----------------------QRQTMLFSATM 185
>gi|108761880|ref|YP_632259.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622]
gi|108465760|gb|ABF90945.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
1622]
Length = 501
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 123/230 (53%), Gaps = 43/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++L+LH L++++ G+ PTPIQ+ IP A G+D++G A+TG+GKT AF LPI+Q
Sbjct: 3 FDDLQLHDTLLRAVKAEGYTTPTPIQQKAIPHAL-AGRDVLGVAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL + G +R L++TPTRELA QV D KG+ +R
Sbjct: 62 RLSAKAPAGGAR---------------PVRCLVLTPTRELAGQVGDSFGTYGKGLPLRHA 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ Q + L+ +++V TPGRL +LM E+ V L +L FVLDEADRM++
Sbjct: 107 VIFGGVGQNPQVQTLRNGVDVLVATPGRLLDLM---EQGFVSLRSLEVFVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ +I LP KRQTL FSAT+
Sbjct: 164 GFIHDVRRVIKALP------------------------PKRQTLFFSATL 189
>gi|19705271|ref|NP_602766.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19713234|gb|AAL94065.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 528
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 116/190 (61%), Gaps = 24/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRELGLSEKILKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------------ENFENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +F+LDEAD M+
Sbjct: 109 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFILDEADEMLNM 165
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 166 GFVEDIEKIL 175
>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
CFBP2957]
gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
CFBP2957]
Length = 495
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 134/258 (51%), Gaps = 48/258 (18%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
S FD + LHP +++++ G+ PTPIQ A IP G+D++GAA+TG+GKT F
Sbjct: 14 SVTFDTFG---LHPDILRALTESGYTRPTPIQAAAIPVVVG-GRDVMGAAQTGTGKTAGF 69
Query: 90 GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAK 148
LPI+Q LL E + +P H +RALI+TPTRELA QV D++ + AK
Sbjct: 70 SLPIIQNLLPEANTSA-------------SPARHPVRALILTPTRELADQVYDNVAKYAK 116
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+R + GG+ Q L+ E++V TPGRL + + ++ V L + VLDE
Sbjct: 117 YTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV---QQRSVNLSQVRMLVLDE 173
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADRM++ G +LQ II++LP RQTL+FSAT +
Sbjct: 174 ADRMLDMGFLPDLQRIINLLP------------------------AHRQTLLFSATFSPE 209
Query: 269 ADFRKKLKHGSLKLKQSV 286
KKL L+ Q++
Sbjct: 210 I---KKLAASYLRHPQTI 224
>gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|421897757|ref|ZP_16328124.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 495
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 134/258 (51%), Gaps = 48/258 (18%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
S FD + LHP +++++ G+ PTPIQ A IP G+D++GAA+TG+GKT F
Sbjct: 14 SVTFDTFG---LHPDILRALTESGYTRPTPIQAAAIPVVVG-GRDVMGAAQTGTGKTAGF 69
Query: 90 GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAK 148
LPI+Q LL E + +P H +RALI+TPTRELA QV D++ + AK
Sbjct: 70 SLPIIQNLLPEANTSA-------------SPARHPVRALILTPTRELADQVYDNVAKYAK 116
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+R + GG+ Q L+ E++V TPGRL + + ++ V L + VLDE
Sbjct: 117 YTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV---QQRSVNLSQVRMLVLDE 173
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADRM++ G +LQ II++LP RQTL+FSAT +
Sbjct: 174 ADRMLDMGFLPDLQRIINLLP------------------------AHRQTLLFSATFSPE 209
Query: 269 ADFRKKLKHGSLKLKQSV 286
KKL L+ Q++
Sbjct: 210 I---KKLAASYLRHPQTI 224
>gi|296328514|ref|ZP_06871033.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|296154323|gb|EFG95122.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 528
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 116/190 (61%), Gaps = 24/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------------ENFENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +F+LDEAD M+
Sbjct: 109 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFILDEADEMLNM 165
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 166 GFVEDIEKIL 175
>gi|222423183|dbj|BAH19569.1| AT4G16630 [Arabidopsis thaliana]
Length = 686
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 131/239 (54%), Gaps = 48/239 (20%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
+S D + EL L L+++ LG+K+PTPIQ ACIP A G+D+ +A TGSGKT A
Sbjct: 162 VSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLAL-TGRDLCASAITGSGKTAA 220
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL--RALIITPTRELALQVTDHLKEV 146
F LP ++RLL + PK R LI+TPTRELA+Q+ ++ +
Sbjct: 221 FALPTLERLL-------------------FRPKRVFATRVLILTPTRELAVQIHSMIQNL 261
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
A+ +++ IVGG+S +QE +L++ P++VV TPGR+ + + V+L L+ +L
Sbjct: 262 AQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMS--VDLDDLAVLIL 319
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
DEADR+++ G E+ ++ + P K+RQT++FSAT+
Sbjct: 320 DEADRLLQTGFATEITELVRLCP------------------------KRRQTMLFSATM 354
>gi|254302223|ref|ZP_04969581.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|422340165|ref|ZP_16421119.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|148322415|gb|EDK87665.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|355370105|gb|EHG17493.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 529
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 116/190 (61%), Gaps = 24/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------------ENFENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +F+LDEAD M+
Sbjct: 109 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFILDEADEMLNM 165
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 166 GFVEDIEKIL 175
>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
Length = 466
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 130/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L LMK+I R+GF+E TPIQ IP + Q KD+IG A+TG+GKT AFG+P+++
Sbjct: 4 FHELGLSNELMKAIRRMGFEETTPIQAETIPLSL-QNKDVIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + E ++ L++ PTRELA+QV++ L ++ VRV+
Sbjct: 63 KVDVKNEA--------------------IQGLVVAPTRELAIQVSEELYKIGAVKRVRVL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG E+Q R LK RP ++VGTPGR+ + ++ L +HT+ VLDEAD M+
Sbjct: 103 PIYGGQDIERQIRALKKRPHIIVGTPGRIIDHINRKTLRLDNVHTV---VLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P +KRQTL+FSAT+
Sbjct: 160 GFIDDIEAILSNVP------------------------EKRQTLLFSATM 185
>gi|421891297|ref|ZP_16322106.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
gi|378963340|emb|CCF98854.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
Length = 495
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 134/258 (51%), Gaps = 48/258 (18%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
S FD + LHP +++++ G+ PTPIQ A IP G+D++GAA+TG+GKT F
Sbjct: 14 SVTFDTFG---LHPDILRALTESGYTRPTPIQAAAIPVVV-GGRDVMGAAQTGTGKTAGF 69
Query: 90 GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAK 148
LPI+Q LL E + +P H +RALI+TPTRELA QV D++ + AK
Sbjct: 70 SLPIIQNLLPEANTSA-------------SPARHPVRALILTPTRELADQVYDNVAKYAK 116
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+R + GG+ Q L+ E++V TPGRL + + ++ V L + VLDE
Sbjct: 117 YTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV---QQRSVNLSQVRMLVLDE 173
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADRM++ G +LQ II++LP RQTL+FSAT +
Sbjct: 174 ADRMLDMGFLPDLQRIINLLP------------------------AHRQTLLFSATFSPE 209
Query: 269 ADFRKKLKHGSLKLKQSV 286
KKL L+ Q++
Sbjct: 210 I---KKLAASYLRHPQTI 224
>gi|374290252|ref|YP_005037305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Blattabacterium
sp. (Cryptocercus punctulatus) str. Cpu]
gi|358377044|gb|AEU09232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Blattabacterium
sp. (Cryptocercus punctulatus) str. Cpu]
Length = 550
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 130/236 (55%), Gaps = 52/236 (22%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
F +N L+ ++K+I +GFK PTPIQK IP KDII A+TG+GKT AFGLP
Sbjct: 4 FKEYN--FLNDKIIKAIENIGFKYPTPIQKKVIPFLLESEKDIIALAQTGTGKTAAFGLP 61
Query: 93 IMQRL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI- 150
I+Q++ LE R YA +ALI+ PTREL LQ+T L +K I
Sbjct: 62 IIQKINLEIR----------------YA-----QALILCPTRELCLQITRDLLSFSKYIL 100
Query: 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210
++++P+ GG+S + Q +LLK ++VGTPGR+ +L+ ++ + L + + +LDEAD
Sbjct: 101 LIKIIPLYGGVSIDNQIQLLKKSNHIIVGTPGRIIDLI---RRNKLYLSNIKYLILDEAD 157
Query: 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
M+ G EL SII LP KKRQ+L+FSAT++
Sbjct: 158 EMLNMGFKEELDSIILKLP------------------------KKRQSLLFSATMS 189
>gi|340753231|ref|ZP_08690020.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31]
gi|422315292|ref|ZP_16396730.1| hypothetical protein FPOG_02366 [Fusobacterium periodonticum D10]
gi|229422830|gb|EEO37877.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31]
gi|404592614|gb|EKA94414.1| hypothetical protein FPOG_02366 [Fusobacterium periodonticum D10]
Length = 529
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 118/190 (62%), Gaps = 23/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K + + G++ PTPIQK IPA KDIIG A+TG+GKT AF LPI++
Sbjct: 10 FRELGLGEKVLKVLSKKGYESPTPIQKLTIPALLKNDKDIIGQAQTGTGKTAAFSLPIIE 69
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E ++ H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 70 NF---------------ETSDH-----HIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 109
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +FVLDEAD M+
Sbjct: 110 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFVLDEADEMLNM 166
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 167 GFIEDIEKIL 176
>gi|373455480|ref|ZP_09547312.1| hypothetical protein HMPREF9453_01481 [Dialister succinatiphilus
YIT 11850]
gi|371934839|gb|EHO62616.1| hypothetical protein HMPREF9453_01481 [Dialister succinatiphilus
YIT 11850]
Length = 504
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 130/233 (55%), Gaps = 48/233 (20%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
+D + EL + P ++K++ +GF+EP+PIQKA IP A GKD+IG A+TG+GKT AFG+P
Sbjct: 2 YDTFKELGIAPEILKAVEDMGFEEPSPIQKAAIPIAL-TGKDLIGQAQTGTGKTAAFGIP 60
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
I++R+ + K P+ A++++PTRELA+Q + + +A+ + +
Sbjct: 61 ILERI----------------DTSKPGPQ----AVVLSPTRELAIQSAEEINHLAQYLPI 100
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+PI GG E+Q + L+ P ++V TPGRL + M G ++L + VLDE D M
Sbjct: 101 HALPIYGGQDIERQFKALRKHPNIIVATPGRLMDHMKRG---TIDLSHVQVLVLDEGDEM 157
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ G ++++I+ +P ++RQT+ FSAT+
Sbjct: 158 VDMGFIDDIRTILAGIP------------------------EERQTMFFSATM 186
>gi|297800452|ref|XP_002868110.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
gi|297313946|gb|EFH44369.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 133/239 (55%), Gaps = 48/239 (20%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
+S D++ EL L L+++ LG+K+PTPIQ ACIP A G+D+ +A TGSGKT A
Sbjct: 165 VSFHADSFMELNLSRPLLRACETLGYKKPTPIQAACIPLAL-TGRDLCASAITGSGKTAA 223
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL--RALIITPTRELALQVTDHLKEV 146
F LP ++RLL + PK R LI+TPTRELA+Q+ ++++
Sbjct: 224 FALPTLERLL-------------------FRPKRVFATRVLILTPTRELAVQIHSMIQKL 264
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
A+ +++ IVGG+S +QE +L++ P++VV TPGR+ + + V+L L+ +L
Sbjct: 265 AQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMS--VDLDDLAVLIL 322
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
DEADR+++ G E+ ++ + P K+RQT++FSAT+
Sbjct: 323 DEADRLLQTGFATEITELVRLCP------------------------KRRQTMLFSATM 357
>gi|34763211|ref|ZP_00144175.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|256846171|ref|ZP_05551629.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2]
gi|27887121|gb|EAA24228.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|256719730|gb|EEU33285.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2]
Length = 528
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 116/190 (61%), Gaps = 24/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------------ENFENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +F+LDEAD M+
Sbjct: 109 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFILDEADEMLNM 165
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 166 GFVEDIEKIL 175
>gi|24584994|ref|NP_609888.2| CG10333 [Drosophila melanogaster]
gi|22946759|gb|AAF53680.2| CG10333 [Drosophila melanogaster]
gi|60677727|gb|AAX33370.1| RH55640p [Drosophila melanogaster]
Length = 822
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 146/238 (61%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +WNE ++ I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKTLA
Sbjct: 389 IPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLA 447
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ + + K+ E+ E+ ++ P A+I+ PTRELA Q+ + + +
Sbjct: 448 FLIPLLSWI----QSLPKI--ERLEDVDQ-GPY----AIIMAPTRELAQQIEEETTKFGQ 496
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VLDE
Sbjct: 497 PLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVLDE 553
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATI 265
ADRMI+ G ++Q I++ +P+TN + + + +T + + +KK RQT++F+AT+
Sbjct: 554 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATM 611
>gi|168046775|ref|XP_001775848.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672855|gb|EDQ59387.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 482
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 144/308 (46%), Gaps = 46/308 (14%)
Query: 7 GTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIP 66
V SN A L +A+ + E + L L L+++ LG K PT +Q+ C+P
Sbjct: 17 AAVAAASNKKTAAPALLDEDAKAAKEITTFEGLGLTDWLVRACKELGMKRPTLVQQGCVP 76
Query: 67 AAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126
GKD+ G A+TGSGKT AF LPI+Q+L E P G + A
Sbjct: 77 QIL-AGKDVFGLAQTGSGKTAAFALPILQKLAEN-------------------PYG-VFA 115
Query: 127 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 186
L++TPTRELA Q++D K + +N+R +VGGM Q + L RP +V+ TPGRL +
Sbjct: 116 LVLTPTRELAFQISDQFKALGSEVNLRSTVVVGGMDMTTQAKALMQRPHIVIATPGRLRD 175
Query: 187 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCV 246
+ VLDEADR+++ G EL+S+ + +P SN
Sbjct: 176 HFMNDPGIPDVFAKAKYLVLDEADRLMDVGFESELRSVFETMP----SN----------- 220
Query: 247 TVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMR-ANV 305
RQTL+FSAT+ + L Q G ++E L ++ + ANV
Sbjct: 221 ---------RQTLLFSATMTSNLKALHDLSLDKAFFYQQYEGFKTVEALQQQYILTPANV 271
Query: 306 AIVDLTNV 313
V L ++
Sbjct: 272 KDVYLMHI 279
>gi|237742838|ref|ZP_04573319.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13]
gi|229430486|gb|EEO40698.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13]
Length = 528
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 116/190 (61%), Gaps = 24/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------------ENFENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +F+LDEAD M+
Sbjct: 109 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFILDEADEMLNM 165
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 166 GFVEDIEKIL 175
>gi|195032613|ref|XP_001988529.1| GH11216 [Drosophila grimshawi]
gi|193904529|gb|EDW03396.1| GH11216 [Drosophila grimshawi]
Length = 864
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 147/240 (61%), Gaps = 16/240 (6%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
+I +WNE P +++ I +G+KEPTPIQ+ IP Q +DIIG AETGSGKT
Sbjct: 429 GKIPNPIRSWNESGFPPEIIEIIDTVGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKT 487
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
LAF +P++ + + K+ E+ E+ ++ P A+I+ PTRELA Q+ + +
Sbjct: 488 LAFLIPLLSWI----QSLPKI--ERLEDVDQ-GP----YAIIMAPTRELAQQIEEETIKF 536
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
+ + +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VL
Sbjct: 537 GQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVL 593
Query: 207 DEADRMIENGHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
DEADRMI+ G ++Q I++ +P+TN + ++E + + ++K RQT++F+AT+
Sbjct: 594 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDEKKLMENFYTKKKYRQTVMFTATM 653
>gi|70725957|ref|YP_252871.1| hypothetical protein SH0956 [Staphylococcus haemolyticus JCSC1435]
gi|123660708|sp|Q4L7W0.1|Y956_STAHJ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SH0956
gi|68446681|dbj|BAE04265.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 503
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 131/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP +GKDI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDKTVETLEAMGFKEPTPIQKDSIPYTL-EGKDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK + ++ALI+ PTRELA+QV + L+E ++G NV+VV
Sbjct: 62 --------------------EKVVGQSGVQALILAPTRELAMQVAEQLREFSRGQNVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM ++Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIDRQIKALKRGPQIVVGTPGRVIDHLNRRTLKTNGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|392571512|gb|EIW64684.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 772
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 138/274 (50%), Gaps = 59/274 (21%)
Query: 11 VVSNGPDDAEEELVSE--------------AEISTEFDAWNELRLHPLLMKSIYRLGFKE 56
S+ DD+EEE ++ AE T F + N L ++KSI LGF
Sbjct: 149 AASSSGDDSEEETEAQKERKAAYFDSEQGPAEAHTSFLSMN---LSRPIIKSITTLGFTT 205
Query: 57 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAE 116
PTPIQ A IP A GKD++G A TGSGKT AF +P+++RL M ++G++A
Sbjct: 206 PTPIQAATIPVAL-LGKDVVGNAVTGSGKTAAFIIPMLERL---------MYRDRGKKA- 254
Query: 117 KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPEL 176
R LI+ PTRELA+Q + ++A ++R +VGG+S + QE L+ RP++
Sbjct: 255 -----AATRCLILAPTRELAVQCYEVGSKLAAHTDIRFALVVGGLSVKAQETNLRTRPDV 309
Query: 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNE 236
V+ TPGRL + + L L VLDEADRM+E+G EL II P +
Sbjct: 310 VIATPGRLIDHLRNSP--TFTLDALDILVLDEADRMLEDGFSDELTEIITSCPTS----- 362
Query: 237 GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
RQT++FSAT+ S D
Sbjct: 363 -------------------RQTMLFSATMTDSVD 377
>gi|407452329|ref|YP_006724054.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-1]
gi|403313313|gb|AFR36154.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-1]
Length = 371
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 129/230 (56%), Gaps = 45/230 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L ++K+I G+ PT IQ+ IP +G+D+IG A+TG+GKT AF +P++Q
Sbjct: 3 FTQLSLSSPILKAISDAGYTTPTAIQEKAIPTIL-EGRDLIGCAQTGTGKTAAFSIPLLQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L E K GK +RALI+TPTRELA+Q+ +++++ +K +N++ +
Sbjct: 62 -ILSETPKKGK----------------SIRALILTPTRELAIQIQENIEQYSKFLNIKHL 104
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ KQER L ++++ TPGRL +LM G L+ L + VLDEADRM++
Sbjct: 105 SIFGGVPQGKQERALNQGVDILIATPGRLLDLMQQG---LLSLSQIEILVLDEADRMLDM 161
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ +P KKRQTL FSAT+
Sbjct: 162 GFVNDVKKILTKVP------------------------KKRQTLFFSATM 187
>gi|30683736|ref|NP_193396.3| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
gi|75338927|sp|Q9ZRZ8.1|RH28_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|3776027|emb|CAA09214.1| RNA helicase [Arabidopsis thaliana]
gi|110736657|dbj|BAF00292.1| RNA helicase like protein [Arabidopsis thaliana]
gi|332658378|gb|AEE83778.1| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
Length = 789
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 142/277 (51%), Gaps = 69/277 (24%)
Query: 12 VSNGPDDAEEELVSEAEISTEF---------------------DAWNELRLHPLLMKSIY 50
S+ D +EE +SE + + E+ D + EL L L+++
Sbjct: 124 ASDAETDKQEEYLSEDDEAAEYKPEDATPKPFFSTVDGVSFHADTFMELNLSRPLLRACE 183
Query: 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110
LG+K+PTPIQ ACIP A G+D+ +A TGSGKT AF LP ++RLL
Sbjct: 184 TLGYKKPTPIQAACIPLAL-TGRDLCASAITGSGKTAAFALPTLERLL------------ 230
Query: 111 KGEEAEKYAPKGHL--RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER 168
+ PK R LI+TPTRELA+Q+ ++ +A+ +++ IVGG+S +QE
Sbjct: 231 -------FRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEV 283
Query: 169 LLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 228
+L++ P++VV TPGR+ + + V+L L+ +LDEADR+++ G E+ ++ +
Sbjct: 284 VLRSMPDIVVATPGRMIDHLRNS--MSVDLDDLAVLILDEADRLLQTGFATEITELVRLC 341
Query: 229 PMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
P K+RQT++FSAT+
Sbjct: 342 P------------------------KRRQTMLFSATM 354
>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
Length = 506
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 129/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL + +KS+ R+GF+E TPIQ+ I +GKDIIG A+TG+GKT AFG+P+++
Sbjct: 4 FSELNISETTLKSVKRMGFEEATPIQEGTI-RLGMEGKDIIGQAQTGTGKTTAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ G+++ LII PTRELA+QV++ L + + NVR++
Sbjct: 63 KI--------------------DTKDGNVQGLIIAPTRELAIQVSEELYRLGQDKNVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP+++VGTPGRL + ++ + ++L ++ +LDEAD M+
Sbjct: 103 SVYGGQEISRQIRALKNRPQIIVGTPGRLLDHIN---RRTLKLDNVNTLILDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++Q+I+ +P T RQTL+FSAT+
Sbjct: 160 GFIEDIQTIMASVPDT------------------------RQTLLFSATM 185
>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
Length = 566
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 134/258 (51%), Gaps = 48/258 (18%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
S FD + LHP +++++ G+ PTPIQ A IP G+D++GAA+TG+GKT F
Sbjct: 85 SVTFDTFG---LHPDILRALTESGYTRPTPIQAAAIPVVVG-GRDVMGAAQTGTGKTAGF 140
Query: 90 GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAK 148
LPI+Q LL E + +P H +RALI+TPTRELA QV D++ + AK
Sbjct: 141 SLPIIQNLLPEANTSA-------------SPARHPVRALILTPTRELADQVYDNVAKYAK 187
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+R + GG+ Q L+ E++V TPGRL + + ++ V L + VLDE
Sbjct: 188 YTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV---QQRSVNLSQVRMLVLDE 244
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADRM++ G +LQ II++LP RQTL+FSAT +
Sbjct: 245 ADRMLDMGFLPDLQRIINLLPA------------------------HRQTLLFSATFSPE 280
Query: 269 ADFRKKLKHGSLKLKQSV 286
KKL L+ Q++
Sbjct: 281 I---KKLAASYLRHPQTI 295
>gi|421526210|ref|ZP_15972819.1| ATP-dependent RNA helicase [Fusobacterium nucleatum ChDC F128]
gi|402257969|gb|EJU08442.1| ATP-dependent RNA helicase [Fusobacterium nucleatum ChDC F128]
Length = 529
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 116/190 (61%), Gaps = 24/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRELGLGEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------------ENFENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +F+LDEAD M+
Sbjct: 109 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFILDEADEMLNM 165
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 166 GFVEDIEKIL 175
>gi|389818136|ref|ZP_10208577.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
gi|388464068|gb|EIM06404.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
Length = 507
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 129/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL + +KS+ R+GF+E TPIQ+ I +GKDIIG A+TG+GKT AFG+P+++
Sbjct: 4 FSELNISETTLKSVKRMGFEEATPIQEGTI-RLGMEGKDIIGQAQTGTGKTTAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ G+++ LII PTRELA+QV++ L + + NVR++
Sbjct: 63 KI--------------------DTKDGNVQGLIIAPTRELAIQVSEELYRLGQDKNVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP+++VGTPGRL + ++ + ++L ++ +LDEAD M+
Sbjct: 103 SVYGGQEISRQIRALKNRPQIIVGTPGRLLDHIN---RRTLKLDNVNTLILDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++Q+I+ +P T RQTL+FSAT+
Sbjct: 160 GFIEDIQTIMASVPDT------------------------RQTLLFSATM 185
>gi|402574642|ref|YP_006623985.1| DNA/RNA helicase [Desulfosporosinus meridiei DSM 13257]
gi|402255839|gb|AFQ46114.1| DNA/RNA helicase, superfamily II [Desulfosporosinus meridiei DSM
13257]
Length = 500
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 129/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L L+M+SI +GF+E TPIQ+ IP+A +GKD+IG A+TG+GKT A+G+P+++
Sbjct: 4 FTDLNLSELVMRSIINMGFEETTPIQEQTIPSAM-EGKDLIGQAQTGTGKTAAYGIPLVE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
R++ + E +++ +++ PTRELA+QV + L ++ + + +
Sbjct: 63 RIMGQSE--------------------NIQGIVLAPTRELAVQVAEELNKIGQFKRIHAL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG + Q R LK RP ++V TPGRL + M + + LH + VLDEAD M+
Sbjct: 103 PIYGGQGIDWQIRALKKRPHIIVATPGRLMDHM---RRKTIRLHDIKIVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P ++RQTL+FSAT+
Sbjct: 160 GFLEDIETILKEVP------------------------EERQTLLFSATM 185
>gi|145357256|ref|XP_001422836.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583080|gb|ABP01195.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 710
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 128/248 (51%), Gaps = 45/248 (18%)
Query: 20 EEELVSEAEISTEFDA--WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
E +V A+ T FDA ++EL L L ++ LG+K+PTPIQ A IP A G+D+ G
Sbjct: 132 ERAVVKGAKGDTTFDAKAFDELHLSRPLTRACEALGYKKPTPIQAAVIPIA-MTGRDVCG 190
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137
A TGSGKT AF LP ++R+L + P L++ PTRELA+
Sbjct: 191 RAVTGSGKTAAFMLPQLERMLHRGPR----------------PAAATHVLVLVPTRELAV 234
Query: 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
QV + +A+ +R V +VGG+S Q L+ RPE+VV TPGR+ + + H
Sbjct: 235 QVHQMTESLAQFTTIRAVLVVGGLSANVQAAALRTRPEIVVATPGRVIDHVRN--THSFG 292
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
L L+ +LDEADR++E G E++ I+ P KKRQ
Sbjct: 293 LEDLATLILDEADRLLEMGFLEEIKEIVRQCP------------------------KKRQ 328
Query: 258 TLVFSATI 265
TL+FSAT+
Sbjct: 329 TLLFSATL 336
>gi|384249200|gb|EIE22682.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 662
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 133/247 (53%), Gaps = 46/247 (18%)
Query: 21 EELVSEAEISTEFDA--WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
E+ ++ T+F A +++L L L+K+ LG+ PTPIQ ACIP A G+DI G+
Sbjct: 102 EDFYAQTPDGTKFSASAFSDLHLSRPLLKACTALGYINPTPIQAACIPLAL-AGRDICGS 160
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 138
A TGSGKT AF LP+++RLL + A Y L++TPTRELA+Q
Sbjct: 161 AITGSGKTAAFALPLLERLLFRNRRI----------AATYG-------LVLTPTRELAVQ 203
Query: 139 VTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
V + +A+ ++R+ +VGG+S + Q L+ PE+VV TPGRL + + + V L
Sbjct: 204 VHSMITNLAQFTDIRIALVVGGLSLQVQSATLRTSPEVVVATPGRLIDHLRNTQS--VGL 261
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 258
L VLDEADR+++ G E++ ++ + P +KRQT
Sbjct: 262 EDLQALVLDEADRLLQMGFSEEIKEVLRLTP------------------------RKRQT 297
Query: 259 LVFSATI 265
L+FSAT+
Sbjct: 298 LLFSATM 304
>gi|399926673|ref|ZP_10784031.1| DEAD/DEAH box helicase [Myroides injenensis M09-0166]
Length = 414
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 133/233 (57%), Gaps = 43/233 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L+ ++++I LG+KEPTPIQ+ IP + KD+IG A+TG+GKT AF +PI+
Sbjct: 3 FEDLHLNKNILRAIEELGYKEPTPIQQKVIPLVLEE-KDLIGCAQTGTGKTAAFAMPIIH 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L K G +K ++A + LIITPTRELALQ+ D+ + AK NV +
Sbjct: 62 YL----HKIGNT--KKAKKA---------KVLIITPTRELALQIHDNFTQYAKYTNVTSI 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGMS + Q L ++++GTPGRL +L +KHL +L +L + VLDEAD M++
Sbjct: 107 TLYGGMSIKPQIEQLNKGADVIIGTPGRLLDLYK--QKHL-DLDSLHYLVLDEADLMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
G +++ +I + P SN RQTL+FSAT+ L+
Sbjct: 164 GFIDDVKKLIQLTP----SN--------------------RQTLLFSATMPLA 192
>gi|242371572|ref|ZP_04817146.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
gi|242350724|gb|EES42325.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
Length = 525
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 133/230 (57%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 20 FKELGISDKTVQTLESMGFKEPTPIQKDSIPYAL-KGDDILGQAQTGTGKTGAFGIPLIE 78
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G+E +++LI+ PTRELA+QV + L+E +KG V+VV
Sbjct: 79 KVV-------------GQEG--------VQSLILAPTRELAMQVAEQLREFSKGQRVQVV 117
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM ++Q + LK P++VVGTPGR+ + ++ + ++ H + +LDEAD M+
Sbjct: 118 TVFGGMPIDRQIKALKRGPQIVVGTPGRVIDHLN---RRTLKTHDIHTLILDEADEMMNM 174
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 175 GFIDDMRFIMDKIPAD-----------------------QRQTMLFSATM 201
>gi|283771250|ref|ZP_06344139.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus H19]
gi|283459455|gb|EFC06548.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus H19]
Length = 506
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 62 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 185
>gi|336419231|ref|ZP_08599497.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
11_3_2]
gi|336163922|gb|EGN66836.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
11_3_2]
Length = 528
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 116/190 (61%), Gaps = 24/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------------ENFENLEHMQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +F+LDEAD M+
Sbjct: 109 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFILDEADEMLNM 165
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 166 GFIEDIEKIL 175
>gi|326431316|gb|EGD76886.1| hypothetical protein PTSG_08233 [Salpingoeca sp. ATCC 50818]
Length = 777
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 140/238 (58%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I + W+E L P +++ I LGFKEPTPIQ+A +P +DI G AETGSGKTLA
Sbjct: 433 IPSPLRFWSESGLDPRILEIIDDLGFKEPTPIQRAALPIGL-TNRDICGVAETGSGKTLA 491
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F LP++Q +L K+ E+ + YA +I+ P+REL Q+ + ++ +
Sbjct: 492 FVLPLLQWILS----LPKLEREQDIDNGPYA-------IILAPSRELVQQIEEQTRKFSD 540
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ VR V ++GG S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ V+DE
Sbjct: 541 PLGVRTVAVIGGASREEQGFQLRQGCEVVIATPGRLIDVLEN--RYLV-LNQCTYVVMDE 597
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGS-NEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
ADRM++ G +Q I++ +P+TN N ++E + + K RQT++F+AT+
Sbjct: 598 ADRMLDMGFEPAVQQILEHVPVTNQKPNTDEAEDEAFLLQDIKNKNKYRQTVLFTATM 655
>gi|313205949|ref|YP_004045126.1| dead/deah box helicase domain-containing protein [Riemerella
anatipestifer ATCC 11845 = DSM 15868]
gi|383485266|ref|YP_005394178.1| dead/deah box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|386322068|ref|YP_006018230.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-GD]
gi|416111966|ref|ZP_11592990.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
RA-YM]
gi|312445265|gb|ADQ81620.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|315022262|gb|EFT35290.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
RA-YM]
gi|325336611|gb|ADZ12885.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-GD]
gi|380459951|gb|AFD55635.1| dead/deah box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
Length = 371
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 129/230 (56%), Gaps = 45/230 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L ++K+I G+ PT IQ+ IP +G+D+IG A+TG+GKT AF +P++Q
Sbjct: 3 FTQLSLSSPILKAISDAGYTTPTAIQEKAIPTIL-EGRDLIGCAQTGTGKTAAFSIPLLQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L E K GK +RALI+TPTRELA+Q+ +++++ +K +N++ +
Sbjct: 62 -ILSETPKKGK----------------SVRALILTPTRELAIQIQENIEQYSKFLNIKHL 104
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ KQER L ++++ TPGRL +LM G L+ L + VLDEADRM++
Sbjct: 105 SIFGGVPQGKQERALNQGVDILIATPGRLLDLMQQG---LLSLSQIEILVLDEADRMLDM 161
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ +P KKRQTL FSAT+
Sbjct: 162 GFVNDVKKILTKVP------------------------KKRQTLFFSATM 187
>gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium sp. SKA34]
gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium sp. SKA34]
Length = 427
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 126/235 (53%), Gaps = 37/235 (15%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ L LHP L+K++ LG+ PT +Q+ IP A +G D++ A+TG+GKT AF LP++
Sbjct: 2 SFQSLNLHPNLLKALTDLGYSTPTDVQQQAIPLAL-KGDDVMAGAQTGTGKTAAFTLPLL 60
Query: 95 QRLL---EEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
QRL+ + E+ +E + K +RALI+TPTRELA QV D + AK
Sbjct: 61 QRLMTLPSQAEQVSTAVENNQKSRNK------IRALILTPTRELAQQVFDSITTYAKYTE 114
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
++V GG S Q + L A E++V TPGRL + + G L E+ T FVLDEADR
Sbjct: 115 IKVAVAYGGTSMNVQVKALNAGAEILVATPGRLLDHVFNGSVSLSEVET---FVLDEADR 171
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
M++ G ++Q I+ +P +RQTL FSAT +
Sbjct: 172 MLDMGFIVDIQRIMKRMP------------------------AERQTLFFSATFS 202
>gi|384550878|ref|YP_005740130.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302333727|gb|ADL23920.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus JKD6159]
Length = 506
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 62 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 185
>gi|363753372|ref|XP_003646902.1| hypothetical protein Ecym_5326 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890538|gb|AET40085.1| hypothetical protein Ecym_5326 [Eremothecium cymbalariae
DBVPG#7215]
Length = 757
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 153/306 (50%), Gaps = 49/306 (16%)
Query: 32 EFDAW-NELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
E AW N+++L ++++ +LGF PT IQ IP A +G DI+G A TGSGKTLA+G
Sbjct: 187 ELPAWSNKMKLSFFTLQALAKLGFTSPTEIQVQSIPKAL-EGLDIMGKASTGSGKTLAYG 245
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV---- 146
+PI++RL + AL+ TPTRELA QVT HL+ V
Sbjct: 246 IPILERLFA-------------------STNDKPIALVFTPTRELAHQVTTHLQNVLGNL 286
Query: 147 AKGINVRVVPIVGGMSTEKQERLL--KARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204
K + ++ + GG+S +KQERLL + +VV TPGR EL+ E + +
Sbjct: 287 VKKMPYAILSLTGGLSIQKQERLLDYEGSSRIVVATPGRFLELLEKNEDLIKRFAEIGVL 346
Query: 205 VLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
VLDEADR++++GHF E + I L EQ +L+ +K QT++ SAT
Sbjct: 347 VLDEADRLLQDGHFDEFEKIFKHL---------NREQ-------KTLKSEKWQTMILSAT 390
Query: 265 IALSADFRKKLKHGSLKLKQSVNGLNSIET----LSERAGMRANVAIVDLTNVSVLANKL 320
S D KL K ++ N +E L + ++ I+D S + ++
Sbjct: 391 --FSIDLFSKLSTTHWKNLKNNKENNEMEAVLKHLMTKISFKSKPVIIDTNPESKITAQV 448
Query: 321 EESFIE 326
+ES IE
Sbjct: 449 KESLIE 454
>gi|258422918|ref|ZP_05685818.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
gi|417891554|ref|ZP_12535616.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21200]
gi|418283345|ref|ZP_12896092.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21202]
gi|418307556|ref|ZP_12919253.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21194]
gi|418560738|ref|ZP_13125247.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21252]
gi|418889888|ref|ZP_13444016.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1524]
gi|418994781|ref|ZP_13542414.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG290]
gi|257846942|gb|EEV70956.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
gi|341851971|gb|EGS92873.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21200]
gi|365167681|gb|EHM59059.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21202]
gi|365245536|gb|EHM86169.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21194]
gi|371971160|gb|EHO88567.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21252]
gi|377741714|gb|EHT65700.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG290]
gi|377751205|gb|EHT75138.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1524]
Length = 506
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 62 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAA-----------------------QRQTMLFSATM 185
>gi|358331630|dbj|GAA50408.1| probable ATP-dependent RNA helicase DDX23, partial [Clonorchis
sinensis]
Length = 903
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 142/238 (59%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +W E+ P L + I ++G+ +PTPIQ+ IP Q +DIIG AETGSGKT A
Sbjct: 113 IPNPLRSWAEMDASPELKEVIKKVGYADPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAA 171
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ + + K+ E+ E+ E+ P A+I+ PTRELA Q+ + + +
Sbjct: 172 FLIPLLNWI----QSLPKL--ERMEDTEQ-GPY----AIIMAPTRELAQQIEEETVKFGR 220
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ ++ V ++GG+S E+Q L+ E+V+GTPGRL +++ E + L+ ++ VLDE
Sbjct: 221 ALGIKTVSLIGGLSREEQALKLRMGAEIVIGTPGRLNDVL---ENRYIVLNQCTYVVLDE 277
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQ-SEQTQTCVTVSSLQRKKRQTLVFSATI 265
AD+MI+ G E+ +I+ LP+TN + + +E ++ + + K RQT++F+AT+
Sbjct: 278 ADKMIDMGFEPEVNNILSYLPVTNEKPDTEDAEDDSKLLSNFATKHKYRQTVMFTATM 335
>gi|379796406|ref|YP_005326407.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356873399|emb|CCE59738.1| Probable DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus
subsp. aureus MSHR1132]
Length = 506
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 62 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAA-----------------------QRQTMLFSATM 185
>gi|321458546|gb|EFX69612.1| hypothetical protein DAPPUDRAFT_300875 [Daphnia pulex]
Length = 621
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 115/188 (61%), Gaps = 21/188 (11%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
LRALIITPTRELA+Q+ HLK VAK ++ + ++GGM+ KQER+L P++V+GTPGR
Sbjct: 195 LRALIITPTRELAVQIEKHLKAVAKYTDISICLVIGGMAAPKQERILSKGPDIVIGTPGR 254
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
LWE++ GG HL ++ + + LDE DR++E GHF E++++++ + N E
Sbjct: 255 LWEMIEGGNSHLSQIKDIRYLALDETDRLLEKGHFAEVRTLLEHI---NKDEE------- 304
Query: 244 TCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA 303
+++ RQ VFSAT+ L+ D +L G+LK K+ + ++ L G+R
Sbjct: 305 --------KKRWRQNFVFSATLTLAHDLPNRL--GNLKSKKKKEAMK-LDKLLSLVGVRP 353
Query: 304 NVAIVDLT 311
+VDLT
Sbjct: 354 KAKVVDLT 361
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 58/83 (69%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
EI+ + W + L ++++++ LGF+ PT IQ AC+P A KDI+GAAETGSGKTL
Sbjct: 33 EITPDMIIWKAMYLPDPIVRAVWELGFQTPTAIQLACLPTAMKGRKDIVGAAETGSGKTL 92
Query: 88 AFGLPIMQRLLEEREKAGKMLEE 110
AFG+PI+ +L+++E K L++
Sbjct: 93 AFGIPILNGILKDKEFELKKLKQ 115
>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
Length = 515
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 125/230 (54%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+NEL L L+K++ +GF PTPIQ+ IP A QG D+IG A+TG+GKT AFG+P++
Sbjct: 4 FNELGLQEELLKAVLDMGFDSPTPIQEQIIPLAM-QGIDLIGQAQTGTGKTAAFGIPLLS 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ EKG +A ++ALI+ PTRELALQV+ + +AK NV +
Sbjct: 63 KI------------EKGNKA--------VQALILAPTRELALQVSQEINRLAKYKNVEAI 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG KQ R LK P++VV TPGR + M ++ + L + +LDEAD M+
Sbjct: 103 AIYGGEDIGKQIRGLKKNPQIVVATPGRFMDHM---RRNTINLANIQTVILDEADEMLSM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P +RQTL+FSAT+
Sbjct: 160 GFIEDIETILQEVP------------------------SERQTLLFSATM 185
>gi|289766283|ref|ZP_06525661.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
gi|289717838|gb|EFD81850.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
Length = 528
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 116/190 (61%), Gaps = 24/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------------ENFENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +F+LDEAD M+
Sbjct: 109 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFILDEADEMLNM 165
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 166 GFIEDIEKIL 175
>gi|27468597|ref|NP_765234.1| ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
gi|418607526|ref|ZP_13170756.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU057]
gi|81843521|sp|Q8CRP6.1|Y1679_STAES RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SE_1679
gi|27316144|gb|AAO05278.1|AE016749_224 ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
gi|374404380|gb|EHQ75354.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU057]
Length = 509
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 135/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYAL-EGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G++ +++LI+ PTRELA+QV + L+E +KG V+VV
Sbjct: 63 KVV-------------GQQG--------VQSLILAPTRELAMQVAEQLREFSKGQKVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q ++LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKVLKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|423721477|ref|ZP_17695659.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
gi|383365528|gb|EID42823.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
Length = 465
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 130/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L LMK+I R+GF+E TPIQ IP + Q KD+IG A+TG+GKT AFG+P+++
Sbjct: 4 FYELGLSNELMKAIRRMGFEETTPIQAETIPLSL-QNKDVIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + EA ++ L++ PTRELA+QV++ L ++ VRV+
Sbjct: 63 KV------------DVTNEA--------IQGLVVAPTRELAIQVSEELYKIGAVKRVRVL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK RP ++VGTPGR+ + ++ HL +HT+ VLDEAD M+
Sbjct: 103 PIYGGQDIGRQIRALKKRPHIIVGTPGRIIDHINRKTLHLENVHTV---VLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P +KRQTL+FSAT+
Sbjct: 160 GFIDDIEAILSNVP------------------------EKRQTLLFSATM 185
>gi|223982748|ref|ZP_03632977.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
12042]
gi|223965288|gb|EEF69571.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
12042]
Length = 424
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 133/230 (57%), Gaps = 44/230 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+NEL +HP ++K+ R+G+ PT IQ+ IP +G+D++G A+TG+GKT AF LPI+
Sbjct: 3 FNELPIHPSILKNCQRMGYTTPTKIQQKAIPPVL-EGRDLLGLAQTGTGKTAAFALPILD 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L+++ +KG+ A ++AL++TPTRELA+Q+ D+ + +G+ ++ V
Sbjct: 62 QLMKQ--------PQKGKRA--------IKALVLTPTRELAIQIVDNFQLYGQGLPLKTV 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ Q LK ++++ TPGRL +L+ + L++L + FVLDEADRM++
Sbjct: 106 VIFGGVKQGAQVDQLKKGADILIATPGRLLDLVG---QRLLDLSQVEIFVLDEADRMLDM 162
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ VS+L K+QTL+FSAT+
Sbjct: 163 GFIHDVKR------------------------VSALLVNKKQTLLFSATM 188
>gi|409195488|ref|ZP_11224151.1| DEAD/DEAH box helicase-like protein [Marinilabilia salmonicolor JCM
21150]
Length = 427
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 127/231 (54%), Gaps = 37/231 (16%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L +++S+ G+ +PTPIQ+ IP GKD++G A+TG+GKT AF +PI+Q
Sbjct: 3 FKDLELIEPILRSLKEKGYTQPTPIQEQSIPILLG-GKDLLGCAQTGTGKTAAFSIPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ L + + K L+ALI+TPTRELA+Q+ + L + K +R +
Sbjct: 62 NI---------YLNSSADNQSRRRRKPRLKALIVTPTRELAIQIGESLTDYGKYTGIRNI 112
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ Q + L+ +++V TPGRL +L+S G + L + +FVLDEADRM++
Sbjct: 113 VIFGGVKQGAQTQSLQRGTDILVATPGRLLDLISQG---FISLREIEYFVLDEADRMLDM 169
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +++ II++LP KRQ+L FSAT+A
Sbjct: 170 GFIHDVRKIINLLPA------------------------KRQSLFFSATMA 196
>gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
gi|336236996|ref|YP_004589612.1| DEAD/DEAH box helicase [Geobacillus thermoglucosidasius C56-YS93]
gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
gi|335363851|gb|AEH49531.1| DEAD/DEAH box helicase domain protein [Geobacillus
thermoglucosidasius C56-YS93]
Length = 465
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 130/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L LMK+I R+GF+E TPIQ IP + Q KD+IG A+TG+GKT AFG+P+++
Sbjct: 4 FYELGLSNELMKAIRRMGFEETTPIQAETIPLSL-QNKDVIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + EA ++ L++ PTRELA+QV++ L ++ VRV+
Sbjct: 63 KV------------DVTNEA--------IQGLVVAPTRELAIQVSEELYKIGAVKRVRVL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK RP ++VGTPGR+ + ++ HL +HT+ VLDEAD M+
Sbjct: 103 PIYGGQDIGRQIRALKKRPHIIVGTPGRIIDHINRKTLHLENVHTV---VLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P +KRQTL+FSAT+
Sbjct: 160 GFIDDIEAILSNVP------------------------EKRQTLLFSATM 185
>gi|418315814|ref|ZP_12927266.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21340]
gi|365242402|gb|EHM83109.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21340]
Length = 506
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 62 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 185
>gi|387603359|ref|YP_005734880.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Staphylococcus aureus subsp. aureus ST398]
gi|404479359|ref|YP_006710789.1| helicase [Staphylococcus aureus 08BA02176]
gi|418310467|ref|ZP_12922007.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21331]
gi|283471297|emb|CAQ50508.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Staphylococcus aureus subsp. aureus ST398]
gi|365236654|gb|EHM77538.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21331]
gi|404440848|gb|AFR74041.1| putative helicase [Staphylococcus aureus 08BA02176]
Length = 506
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 62 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 185
>gi|257426220|ref|ZP_05602635.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257428878|ref|ZP_05605272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257431487|ref|ZP_05607860.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus 68-397]
gi|257434197|ref|ZP_05610547.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus E1410]
gi|257437110|ref|ZP_05613150.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus M876]
gi|282914927|ref|ZP_06322707.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus M899]
gi|282925469|ref|ZP_06333123.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus C101]
gi|293508999|ref|ZP_06667786.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510911|ref|ZP_06669610.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus M809]
gi|293547513|ref|ZP_06672188.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus M1015]
gi|257270925|gb|EEV03098.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257274220|gb|EEV05737.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257277728|gb|EEV08398.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus 68-397]
gi|257280836|gb|EEV10981.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus E1410]
gi|257283503|gb|EEV13630.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus M876]
gi|282312870|gb|EFB43271.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus C101]
gi|282321130|gb|EFB51461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus M899]
gi|290919633|gb|EFD96706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus M1015]
gi|291094703|gb|EFE24975.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466196|gb|EFF08723.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus M809]
Length = 506
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 130/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++L K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 63 KVL---------------------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 185
>gi|145353647|ref|XP_001421118.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581354|gb|ABO99411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 755
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 128/248 (51%), Gaps = 45/248 (18%)
Query: 20 EEELVSEAEISTEFDA--WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
E +V A+ T FDA ++EL L L ++ LG+K+PTPIQ A IP A G+D+ G
Sbjct: 132 ERAVVKGAKGDTTFDAKAFDELHLSRPLTRACEALGYKKPTPIQAAVIPIA-MTGRDVCG 190
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137
A TGSGKT AF LP ++R+L + P L++ PTRELA+
Sbjct: 191 RAVTGSGKTAAFMLPQLERMLHRGPR----------------PAAATHVLVLVPTRELAV 234
Query: 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
QV + +A+ +R V +VGG+S Q L+ RPE+VV TPGR+ + + H
Sbjct: 235 QVHQMTESLAQFTTIRAVLVVGGLSANVQAAALRTRPEIVVATPGRVIDHVRN--THSFG 292
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
L L+ +LDEADR++E G E++ I+ P KKRQ
Sbjct: 293 LEDLATLILDEADRLLEMGFLEEIKEIVRQCP------------------------KKRQ 328
Query: 258 TLVFSATI 265
TL+FSAT+
Sbjct: 329 TLLFSATL 336
>gi|423137936|ref|ZP_17125579.1| hypothetical protein HMPREF9942_01717 [Fusobacterium nucleatum
subsp. animalis F0419]
gi|371958886|gb|EHO76587.1| hypothetical protein HMPREF9942_01717 [Fusobacterium nucleatum
subsp. animalis F0419]
Length = 528
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 116/190 (61%), Gaps = 24/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------------ENFENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +F+LDEAD M+
Sbjct: 109 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFILDEADEMLNM 165
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 166 GFIEDIEKIL 175
>gi|417898362|ref|ZP_12542283.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21259]
gi|341848722|gb|EGS89882.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21259]
Length = 506
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 62 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 185
>gi|282917430|ref|ZP_06325183.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus D139]
gi|282318632|gb|EFB48989.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus D139]
Length = 506
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 62 --------------------EKVVGKQGVQSLILAPTRELAMQVAERLREFSRGQGVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 185
>gi|340759001|ref|ZP_08695578.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725]
gi|251835856|gb|EES64394.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725]
Length = 527
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 114/191 (59%), Gaps = 24/191 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L +K++ + G+++PTPIQ IPA KDIIG A+TG+GKT AF LPI++
Sbjct: 7 FKKLGLGEKTIKALSKKGYEKPTPIQALTIPALLDGEKDIIGQAQTGTGKTAAFSLPILE 66
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
R + P ++A+++ PTRELA+QV + + +A G +R+
Sbjct: 67 R---------------------FEPGKVVQAIVLAPTRELAIQVAEEMNSLANGKKIRIT 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S E Q R LK +++VGTPGR+ +LM ++ L++L L +F+LDEAD M+
Sbjct: 106 PVYGGQSIEFQIRQLKKGTDIIVGTPGRVMDLM---DRKLIKLDNLKYFILDEADEMLNM 162
Query: 216 GHFRELQSIID 226
G +++ I++
Sbjct: 163 GFLEDVEKILE 173
>gi|49484306|ref|YP_041530.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
gi|282904748|ref|ZP_06312622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus C160]
gi|282906426|ref|ZP_06314277.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282920258|ref|ZP_06327982.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
aureus C427]
gi|283958860|ref|ZP_06376305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus A017934/97]
gi|295428668|ref|ZP_06821294.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|415684901|ref|ZP_11449930.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
gi|417887143|ref|ZP_12531279.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21195]
gi|418565159|ref|ZP_13129574.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21264]
gi|418582899|ref|ZP_13146972.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418600951|ref|ZP_13164400.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21345]
gi|418892594|ref|ZP_13446705.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418898667|ref|ZP_13452734.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418901468|ref|ZP_13455519.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418909906|ref|ZP_13463896.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG149]
gi|418918125|ref|ZP_13472079.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418923794|ref|ZP_13477706.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418983027|ref|ZP_13530731.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418986647|ref|ZP_13534328.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1500]
gi|81650664|sp|Q6GEZ3.1|Y2168_STAAR RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAR2168
gi|49242435|emb|CAG41149.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
gi|282316118|gb|EFB46499.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
aureus C427]
gi|282330376|gb|EFB59894.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282594781|gb|EFB99758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus C160]
gi|283789578|gb|EFC28401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus A017934/97]
gi|295127338|gb|EFG56978.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|315193240|gb|EFU23638.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
gi|341858415|gb|EGS99208.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21195]
gi|371974783|gb|EHO92099.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21264]
gi|374400368|gb|EHQ71483.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21345]
gi|377700704|gb|EHT25038.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377702654|gb|EHT26974.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377702762|gb|EHT27081.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377709133|gb|EHT33404.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377729734|gb|EHT53820.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377732973|gb|EHT57022.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377748968|gb|EHT72922.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377749869|gb|EHT73808.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG149]
gi|377758226|gb|EHT82112.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC341D]
Length = 506
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 62 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 185
>gi|15925071|ref|NP_372605.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927656|ref|NP_375189.1| hypothetical protein SA1885 [Staphylococcus aureus subsp. aureus
N315]
gi|21283733|ref|NP_646821.1| hypothetical protein MW2004 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486874|ref|YP_044095.1| helicase [Staphylococcus aureus subsp. aureus MSSA476]
gi|57650754|ref|YP_186888.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus COL]
gi|87161548|ref|YP_494683.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195982|ref|YP_500795.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148268533|ref|YP_001247476.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus JH9]
gi|150394597|ref|YP_001317272.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus JH1]
gi|151222197|ref|YP_001333019.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus str. Newman]
gi|156980397|ref|YP_001442656.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161510293|ref|YP_001575952.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253316240|ref|ZP_04839453.1| putative helicase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006870|ref|ZP_05145471.2| putative helicase [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257793840|ref|ZP_05642819.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
gi|258407008|ref|ZP_05680158.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
gi|258422029|ref|ZP_05684946.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
gi|258433601|ref|ZP_05688674.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
gi|258440496|ref|ZP_05690666.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|258445704|ref|ZP_05693882.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
gi|258450158|ref|ZP_05698253.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
gi|258453208|ref|ZP_05701199.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus A5948]
gi|258453387|ref|ZP_05701369.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
gi|262049250|ref|ZP_06022125.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
gi|262052494|ref|ZP_06024692.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
gi|269203717|ref|YP_003282986.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
aureus ED98]
gi|282895275|ref|ZP_06303488.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
gi|282911647|ref|ZP_06319446.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282923070|ref|ZP_06330755.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
gi|282929553|ref|ZP_06336950.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
gi|284025116|ref|ZP_06379514.1| putative helicase [Staphylococcus aureus subsp. aureus 132]
gi|294850566|ref|ZP_06791293.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
gi|295407012|ref|ZP_06816814.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
gi|296275711|ref|ZP_06858218.1| putative helicase [Staphylococcus aureus subsp. aureus MR1]
gi|297246745|ref|ZP_06930562.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
gi|379015208|ref|YP_005291444.1| helicase [Staphylococcus aureus subsp. aureus VC40]
gi|379021757|ref|YP_005298419.1| cold-shock DEAD-box protein A [Staphylococcus aureus subsp. aureus
M013]
gi|384865266|ref|YP_005750625.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|384870631|ref|YP_005753345.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
T0131]
gi|385782321|ref|YP_005758492.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
11819-97]
gi|386831664|ref|YP_006238318.1| putative helicase [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|387143797|ref|YP_005732191.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
gi|387151207|ref|YP_005742771.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981]
gi|387781060|ref|YP_005755858.1| putative helicase [Staphylococcus aureus subsp. aureus LGA251]
gi|415688401|ref|ZP_11452116.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01]
gi|415694064|ref|ZP_11455644.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03]
gi|416841693|ref|ZP_11904548.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
gi|416847139|ref|ZP_11906948.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
gi|417650388|ref|ZP_12300160.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21189]
gi|417651619|ref|ZP_12301379.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21172]
gi|417655380|ref|ZP_12305093.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21193]
gi|417799422|ref|ZP_12446562.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21310]
gi|417803227|ref|ZP_12450272.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21318]
gi|417892680|ref|ZP_12536727.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21201]
gi|417897497|ref|ZP_12541428.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21235]
gi|417900259|ref|ZP_12544149.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21266]
gi|417905571|ref|ZP_12549379.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21269]
gi|418277254|ref|ZP_12891868.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21178]
gi|418286656|ref|ZP_12899297.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21209]
gi|418313951|ref|ZP_12925433.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21334]
gi|418319265|ref|ZP_12930649.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21232]
gi|418320043|ref|ZP_12931407.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus VCU006]
gi|418425251|ref|ZP_12998345.1| hypothetical protein MQA_01557 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418428143|ref|ZP_13001132.1| hypothetical protein MQC_01722 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418431028|ref|ZP_13003930.1| hypothetical protein MQE_02589 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418434933|ref|ZP_13006785.1| hypothetical protein MQG_02595 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437701|ref|ZP_13009479.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS5]
gi|418440630|ref|ZP_13012317.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS6]
gi|418443605|ref|ZP_13015192.1| hypothetical protein MQM_02704 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446602|ref|ZP_13018064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS8]
gi|418449687|ref|ZP_13021059.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS9]
gi|418452527|ref|ZP_13023850.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS10]
gi|418455483|ref|ZP_13026734.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418458359|ref|ZP_13029550.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS11b]
gi|418562003|ref|ZP_13126472.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21262]
gi|418567928|ref|ZP_13132287.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21272]
gi|418571317|ref|ZP_13135553.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21283]
gi|418572707|ref|ZP_13136913.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21333]
gi|418580004|ref|ZP_13144094.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418599110|ref|ZP_13162606.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21343]
gi|418638750|ref|ZP_13201033.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-3]
gi|418641112|ref|ZP_13203326.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-24]
gi|418645440|ref|ZP_13207562.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-55]
gi|418646512|ref|ZP_13208614.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-88]
gi|418649117|ref|ZP_13211147.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-91]
gi|418652298|ref|ZP_13214266.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-99]
gi|418655867|ref|ZP_13217699.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-105]
gi|418658669|ref|ZP_13220382.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-111]
gi|418661301|ref|ZP_13222893.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-122]
gi|418871169|ref|ZP_13425556.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-125]
gi|418875945|ref|ZP_13430194.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC93]
gi|418878939|ref|ZP_13433170.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418881777|ref|ZP_13435989.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418884407|ref|ZP_13438597.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418887111|ref|ZP_13441254.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418895677|ref|ZP_13449768.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418904421|ref|ZP_13458458.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418907013|ref|ZP_13461034.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418912631|ref|ZP_13466608.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG547]
gi|418920910|ref|ZP_13474838.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418926494|ref|ZP_13480390.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418929425|ref|ZP_13483309.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418932399|ref|ZP_13486227.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418935062|ref|ZP_13488879.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC128]
gi|418947874|ref|ZP_13500213.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-157]
gi|418950869|ref|ZP_13503007.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-160]
gi|418955800|ref|ZP_13507736.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-189]
gi|418989148|ref|ZP_13536816.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1835]
gi|418991998|ref|ZP_13539656.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1096]
gi|419774795|ref|ZP_14300752.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus CO-23]
gi|419783577|ref|ZP_14309361.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-M]
gi|421150952|ref|ZP_15610603.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|424786070|ref|ZP_18212863.1| Cold-shock DEAD-box protein A [Staphylococcus aureus CN79]
gi|440707003|ref|ZP_20887718.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21282]
gi|440735442|ref|ZP_20915048.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|443637665|ref|ZP_21121736.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21236]
gi|443640144|ref|ZP_21124139.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21196]
gi|448742179|ref|ZP_21724131.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus
KT/314250]
gi|448743158|ref|ZP_21725070.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus KT/Y21]
gi|81648913|sp|Q6G7M9.1|Y1985_STAAS RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAS1985
gi|81694077|sp|Q5HEB9.1|Y2072_STAAC RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
SACOL2072
gi|81704263|sp|Q7A0D2.1|Y2004_STAAW RecName: Full=Probable DEAD-box ATP-dependent RNA helicase MW2004
gi|81705333|sp|Q7A4G0.1|Y1885_STAAN RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SA1885
gi|81781186|sp|Q99SH6.1|Y2081_STAAM RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAV2081
gi|122538977|sp|Q2FWH5.1|Y2316_STAA8 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
SAOUHSC_02316
gi|123484971|sp|Q2FF45.1|Y2037_STAA3 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
SAUSA300_2037
gi|13701876|dbj|BAB43168.1| SA1885 [Staphylococcus aureus subsp. aureus N315]
gi|14247854|dbj|BAB58243.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
Mu50]
gi|21205175|dbj|BAB95869.1| MW2004 [Staphylococcus aureus subsp. aureus MW2]
gi|49245317|emb|CAG43792.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
gi|57284940|gb|AAW37034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus COL]
gi|87127522|gb|ABD22036.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203540|gb|ABD31350.1| ATP-dependent RNA helicase, DEAD box family, putative
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|147741602|gb|ABQ49900.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
aureus JH9]
gi|149947049|gb|ABR52985.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
aureus JH1]
gi|150374997|dbj|BAF68257.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus str. Newman]
gi|156722532|dbj|BAF78949.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus
Mu3]
gi|160369102|gb|ABX30073.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257787812|gb|EEV26152.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
gi|257841341|gb|EEV65785.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
gi|257841929|gb|EEV66361.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
gi|257849332|gb|EEV73311.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
gi|257852565|gb|EEV76483.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|257855543|gb|EEV78480.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
gi|257856632|gb|EEV79538.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
gi|257859154|gb|EEV82011.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus A5948]
gi|257864368|gb|EEV87114.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
gi|259159615|gb|EEW44661.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
gi|259162615|gb|EEW47182.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
gi|262076007|gb|ACY11980.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
aureus ED98]
gi|269941681|emb|CBI50088.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
gi|282324412|gb|EFB54725.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282589032|gb|EFB94136.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
gi|282593261|gb|EFB98258.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
gi|282762348|gb|EFC02495.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
gi|285817746|gb|ADC38233.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981]
gi|294822586|gb|EFG39028.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
gi|294968037|gb|EFG44064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
gi|297176405|gb|EFH35677.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
gi|312830433|emb|CBX35275.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315128752|gb|EFT84752.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03]
gi|315196987|gb|EFU27329.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01]
gi|323439203|gb|EGA96930.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
gi|323442419|gb|EGB00048.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
gi|329314766|gb|AEB89179.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
T0131]
gi|329724041|gb|EGG60565.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21189]
gi|329726361|gb|EGG62829.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21172]
gi|329729332|gb|EGG65740.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21193]
gi|334272865|gb|EGL91220.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21318]
gi|334273753|gb|EGL92092.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21310]
gi|341839595|gb|EGS81175.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21235]
gi|341843034|gb|EGS84266.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21269]
gi|341848939|gb|EGS90094.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21266]
gi|341857246|gb|EGS98062.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21201]
gi|344178162|emb|CCC88648.1| putative helicase [Staphylococcus aureus subsp. aureus LGA251]
gi|359831066|gb|AEV79044.1| Cold-shock DEAD-box protein A [Staphylococcus aureus subsp. aureus
M013]
gi|364523310|gb|AEW66060.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 11819-97]
gi|365165869|gb|EHM57617.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21209]
gi|365173732|gb|EHM64218.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21178]
gi|365228359|gb|EHM69543.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus VCU006]
gi|365234565|gb|EHM75495.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21334]
gi|365241002|gb|EHM81759.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21232]
gi|371974841|gb|EHO92156.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21262]
gi|371980485|gb|EHO97691.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21283]
gi|371981117|gb|EHO98304.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21272]
gi|371984051|gb|EHP01178.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21333]
gi|374363905|gb|AEZ38010.1| helicase [Staphylococcus aureus subsp. aureus VC40]
gi|374398160|gb|EHQ69350.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21343]
gi|375019875|gb|EHS13425.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-24]
gi|375020751|gb|EHS14267.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-3]
gi|375022082|gb|EHS15574.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-99]
gi|375022959|gb|EHS16425.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-55]
gi|375030376|gb|EHS23693.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-91]
gi|375032669|gb|EHS25895.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-88]
gi|375035253|gb|EHS28383.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-105]
gi|375037800|gb|EHS30808.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-111]
gi|375039092|gb|EHS32036.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-122]
gi|375369103|gb|EHS72994.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-125]
gi|375370525|gb|EHS74330.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-189]
gi|375374056|gb|EHS77700.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-157]
gi|375375282|gb|EHS78872.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-160]
gi|377692852|gb|EHT17231.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377692975|gb|EHT17352.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377693343|gb|EHT17715.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377711481|gb|EHT35712.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377713240|gb|EHT37449.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377715676|gb|EHT39863.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377721138|gb|EHT45279.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG547]
gi|377721406|gb|EHT45538.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377723840|gb|EHT47961.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377729773|gb|EHT53856.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377736617|gb|EHT60632.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377739857|gb|EHT63857.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377741345|gb|EHT65334.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377761469|gb|EHT85340.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|377762455|gb|EHT86318.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC348]
gi|377768371|gb|EHT92154.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC93]
gi|377769295|gb|EHT93069.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC128]
gi|383364874|gb|EID42179.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-M]
gi|383971463|gb|EID87538.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus CO-23]
gi|385197056|emb|CCG16701.1| putative helicase [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|387716292|gb|EIK04351.1| hypothetical protein MQC_01722 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387716987|gb|EIK05022.1| hypothetical protein MQE_02589 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387717047|gb|EIK05073.1| hypothetical protein MQA_01557 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387723829|gb|EIK11540.1| hypothetical protein MQG_02595 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387725446|gb|EIK13060.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS5]
gi|387728589|gb|EIK16073.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS6]
gi|387733388|gb|EIK20572.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS8]
gi|387734873|gb|EIK22022.1| hypothetical protein MQM_02704 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387735068|gb|EIK22207.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS9]
gi|387742473|gb|EIK29288.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS10]
gi|387743010|gb|EIK29809.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387744154|gb|EIK30925.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS11b]
gi|394329036|gb|EJE55163.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|421955596|gb|EKU07932.1| Cold-shock DEAD-box protein A [Staphylococcus aureus CN79]
gi|436430653|gb|ELP28012.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|436506489|gb|ELP42284.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21282]
gi|443405200|gb|ELS63809.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21236]
gi|443405702|gb|ELS64297.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21196]
gi|445547050|gb|ELY15324.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus
KT/314250]
gi|445563511|gb|ELY19670.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus KT/Y21]
Length = 506
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 62 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 185
>gi|260823718|ref|XP_002606227.1| hypothetical protein BRAFLDRAFT_287109 [Branchiostoma floridae]
gi|229291567|gb|EEN62237.1| hypothetical protein BRAFLDRAFT_287109 [Branchiostoma floridae]
Length = 564
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 136/238 (57%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I W E L + I LG+KEPTPIQ+ IP Q +DIIG AETGSGKTLA
Sbjct: 199 IPNPLRTWKEASLTDEIDSIIKDLGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLA 257
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ + E K++ + + YA +I+ PTRELA Q+ + + +
Sbjct: 258 FLIPLLIWI----ESLPKIVRNEDADQGPYA-------IILAPTRELAQQIEEETLKFGR 306
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ +R V ++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ V+DE
Sbjct: 307 RLGIRTVAVIGGLSREDQGFKLRMGCEIVIATPGRLIDVLEN--RYLV-LSQCTYVVMDE 363
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGS-NEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
ADRMI+ G ++Q I++ LP+TN + ++E + S + K RQT++F+AT+
Sbjct: 364 ADRMIDMGFEPDVQKILEYLPVTNQKPDTEEAEDVEKLKANFSTKNKYRQTVMFTATM 421
>gi|294783794|ref|ZP_06749118.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
1_1_41FAA]
gi|294480672|gb|EFG28449.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
1_1_41FAA]
Length = 529
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 115/190 (60%), Gaps = 23/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI++
Sbjct: 10 FRELGLGEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPIIE 69
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 70 NF--------------------ETSDHHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 109
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +FVLDEAD M+
Sbjct: 110 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFVLDEADEMLNM 166
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 167 GFIEDIEKIL 176
>gi|300690871|ref|YP_003751866.1| DEAD/DEAH box helicase [Ralstonia solanacearum PSI07]
gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
PSI07]
gi|344167288|emb|CCA79493.1| ATP-dependent RNA helicase, deaD-box family [blood disease
bacterium R229]
Length = 495
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 135/263 (51%), Gaps = 48/263 (18%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+ A S FD + LHP +++++ G+ PTPIQ A IP G+D++GAA+TG+G
Sbjct: 9 APANESVTFDTFG---LHPDILRALAESGYTRPTPIQAAAIPVVV-AGRDVMGAAQTGTG 64
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHL 143
KT F LPI+Q LL E + +P H +RALI+TPTRELA QV D++
Sbjct: 65 KTAGFSLPIIQNLLPEANTSA-------------SPARHPVRALILTPTRELADQVYDNV 111
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
+ K +R + GG+ Q L+ E++V TPGRL + + ++ V L +
Sbjct: 112 AKYGKYTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV---QQRSVNLSQVRM 168
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
VLDEADRM++ G +LQ II++LP RQTL+FSA
Sbjct: 169 LVLDEADRMLDMGFLPDLQRIINLLP------------------------AHRQTLLFSA 204
Query: 264 TIALSADFRKKLKHGSLKLKQSV 286
T + KKL L+ Q++
Sbjct: 205 TFSPEI---KKLAASYLRHPQTI 224
>gi|297735665|emb|CBI18352.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 134/241 (55%), Gaps = 27/241 (11%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
++I +W E +L P L+K++ R G+K P+PIQ A IP Q +D+IG AETGSGKT
Sbjct: 203 SKIPRPMRSWVESKLSPELLKAVERAGYKTPSPIQMAAIPLGLQQ-RDVIGIAETGSGKT 261
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF LP++ + L EE E P A+++ PTRELA Q+ D +
Sbjct: 262 AAFVLPMLTYI--------SRLPPISEENEAEGPY----AVVMAPTRELAQQIEDETVKF 309
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
A + ++VV IVGG S E+Q ++ E+V+ TPGRL + + E+ L+ ++ VL
Sbjct: 310 AHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL---ERRYAVLNQCNYVVL 366
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK--RQTLVFSAT 264
DEADRMI+ G ++ ++D +P +N E + E+ L KK R T +FSAT
Sbjct: 367 DEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEE---------LDEKKIYRTTYMFSAT 417
Query: 265 I 265
+
Sbjct: 418 M 418
>gi|237743040|ref|ZP_04573521.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1]
gi|229433600|gb|EEO43812.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1]
Length = 528
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 116/190 (61%), Gaps = 24/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------------ENFENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +F+LDEAD M+
Sbjct: 109 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFILDEADEMLNM 165
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 166 GFIEDIEKIL 175
>gi|221141602|ref|ZP_03566095.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|384862733|ref|YP_005745453.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|302751962|gb|ADL66139.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus str. JKD6008]
Length = 506
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 62 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAV-----------------------QRQTILFSATM 185
>gi|266619246|ref|ZP_06112181.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
gi|288869241|gb|EFD01540.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
Length = 432
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 151/289 (52%), Gaps = 67/289 (23%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L+L L+K++ G+ P+PIQ+ IP GKD++G A+TG+GKT AF LPI+Q
Sbjct: 3 FKDLQLSAPLLKALEEKGYTTPSPIQEKAIPHVL-AGKDVLGCAQTGTGKTAAFALPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L+ +K K++ K +R+LI+TPTRELALQ+ ++ KE VR
Sbjct: 62 NLMRPSDK-------------KHS-KRVIRSLILTPTRELALQIAENFKEYGSHTPVRCA 107
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S Q + L+ +++V TPGRL +L+ GE + L + FVLDEADRM++
Sbjct: 108 VIFGGVSAVPQIKELQRGIDILVATPGRLNDLIHQGE---ISLSHVEMFVLDEADRMLDM 164
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275
G +++ II +LP+ K+QTL+FSAT+
Sbjct: 165 GFIHDVKKIISLLPV------------------------KKQTLLFSATMP--------- 191
Query: 276 KHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESF 324
I+ L+E+ + N A+V++T VS + + +E+S
Sbjct: 192 --------------PEIQALTEK--LLHNPAVVEVTPVSSIVDLIEDSL 224
>gi|336406430|ref|ZP_08587085.1| hypothetical protein HMPREF0127_04398 [Bacteroides sp. 1_1_30]
gi|345509853|ref|ZP_08789440.1| hypothetical protein BSAG_03518 [Bacteroides sp. D1]
gi|335934634|gb|EGM96619.1| hypothetical protein HMPREF0127_04398 [Bacteroides sp. 1_1_30]
gi|345454658|gb|EEO51805.2| hypothetical protein BSAG_03518 [Bacteroides sp. D1]
Length = 382
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 136/242 (56%), Gaps = 45/242 (18%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
+S A+I+ F + EL + ++K+I G+ PTPIQ+ IP A + +DI+G A+TG+
Sbjct: 1 MSTAKIT--FMTFKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAK-RDILGCAQTGT 57
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKT +F +PI+Q L ++E A + ++ALI+TPTRELALQ+++ +
Sbjct: 58 GKTASFAIPIIQHLQLDKEAARRQ---------------GIKALILTPTRELALQISECI 102
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
+ +K +R I GG++ Q LL+ +++V TPGRL +LMS G H L T+ +
Sbjct: 103 DDYSKHTRIRHGVIFGGVNQRPQVDLLRKGIDILVATPGRLLDLMSQGHIH---LDTIQY 159
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
FVLDEADRM++ G +++ I+ LP K++QTL FSA
Sbjct: 160 FVLDEADRMLDMGFIHDIKRILPKLP------------------------KEKQTLFFSA 195
Query: 264 TI 265
T+
Sbjct: 196 TM 197
>gi|372270527|ref|ZP_09506575.1| ATP-dependent DEAD/DEAH box helicase [Marinobacterium stanieri S30]
Length = 460
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 128/234 (54%), Gaps = 45/234 (19%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+F+ + EL LH L+K+I +LGF +PTP+Q +P A G D+I AETGSGKTLAF
Sbjct: 5 DFNVFAELMLHERLLKAIDKLGFTQPTPVQLETLPEAL-AGHDLIVGAETGSGKTLAFVA 63
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
P++Q L+ +P R LI+TPTRELA QV +K++A
Sbjct: 64 PMLQHFLD-----------------TPSPNTGTRGLILTPTRELAEQVCQSVKDLAAFTR 106
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
V V+ + GG ++Q ++ PE++V TPGRL E + E+ ++L L + VLDEADR
Sbjct: 107 VNVMTVCGGTGFKEQAAEMRKNPEVLVATPGRLAEHL---ERQTLDLDDLEYLVLDEADR 163
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
M++ G E+ +I+D+ C R +RQ++VFSAT+
Sbjct: 164 MLDMGFRDEVMAIVDI-----------------C-------RPQRQSMVFSATL 193
>gi|440798652|gb|ELR19719.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 906
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 141/249 (56%), Gaps = 26/249 (10%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E +L +L+ +I G+K+P PIQ IP QG+D+IG AETGSGKT AF LP++
Sbjct: 477 WGESKLPTVLLDAIESAGYKQPMPIQMQSIPIGL-QGRDLIGLAETGSGKTCAFVLPMLV 535
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ K M E + ALI+ PTRELALQ+ + A + R V
Sbjct: 536 YI----SKLPPMTAENAADGPY--------ALIMAPTRELALQIEQEAAKFASAMGFRTV 583
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+VGG S E+Q L+ E+++ TPGRL + + E+ V L+ ++ VLDEADRM++
Sbjct: 584 AVVGGQSIEEQGFSLRRGAEILIATPGRLVDCL---EQRYVVLNQCNYVVLDEADRMVDM 640
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-----RQTLVFSATIALSAD 270
G ++ +I+D +P +N +E ++T +++LQ +K R T++FSAT+ ++ +
Sbjct: 641 GFEVQVTTILDAMPSSNLKSE---DETTAEEQMAALQEEKPDHVYRTTVMFSATMPVAVE 697
Query: 271 --FRKKLKH 277
RK L+H
Sbjct: 698 RLARKYLRH 706
>gi|386729768|ref|YP_006196151.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
71193]
gi|418979357|ref|ZP_13527153.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
DR10]
gi|379992788|gb|EIA14238.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
DR10]
gi|384231061|gb|AFH70308.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
71193]
Length = 517
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 15 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 72
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 73 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 112
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 113 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 169
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 170 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 196
>gi|253731082|ref|ZP_04865247.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|297210100|ref|ZP_06926493.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|300910462|ref|ZP_07127914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus TCH70]
gi|304379262|ref|ZP_07362001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|384867000|ref|YP_005747196.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus TCH60]
gi|422743011|ref|ZP_16797007.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
MRSA177]
gi|422745973|ref|ZP_16799908.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
MRSA131]
gi|424771982|ref|ZP_18199098.1| putative DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
aureus subsp. aureus CM05]
gi|253725209|gb|EES93938.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|296885300|gb|EFH24240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|300888304|gb|EFK83495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus TCH70]
gi|304342121|gb|EFM08021.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|312437505|gb|ADQ76576.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus TCH60]
gi|320140748|gb|EFW32600.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320143723|gb|EFW35500.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
MRSA177]
gi|402347512|gb|EJU82540.1| putative DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
aureus subsp. aureus CM05]
gi|408424041|emb|CCJ11452.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408426030|emb|CCJ13417.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408428018|emb|CCJ15381.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408430007|emb|CCJ27172.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408431993|emb|CCJ19308.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408433988|emb|CCJ21273.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408435980|emb|CCJ23240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408437963|emb|CCJ25206.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
Length = 517
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 15 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 72
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 73 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 112
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 113 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 169
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 170 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 196
>gi|225443496|ref|XP_002270644.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Vitis
vinifera]
Length = 709
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 134/241 (55%), Gaps = 27/241 (11%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
++I +W E +L P L+K++ R G+K P+PIQ A IP Q +D+IG AETGSGKT
Sbjct: 282 SKIPRPMRSWVESKLSPELLKAVERAGYKTPSPIQMAAIPLGLQQ-RDVIGIAETGSGKT 340
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF LP++ + L EE E P A+++ PTRELA Q+ D +
Sbjct: 341 AAFVLPMLTYI--------SRLPPISEENEAEGPY----AVVMAPTRELAQQIEDETVKF 388
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
A + ++VV IVGG S E+Q ++ E+V+ TPGRL + + E+ L+ ++ VL
Sbjct: 389 AHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL---ERRYAVLNQCNYVVL 445
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK--RQTLVFSAT 264
DEADRMI+ G ++ ++D +P +N E + E+ L KK R T +FSAT
Sbjct: 446 DEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEE---------LDEKKIYRTTYMFSAT 496
Query: 265 I 265
+
Sbjct: 497 M 497
>gi|297589855|ref|ZP_06948495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus MN8]
gi|297576983|gb|EFH95697.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus MN8]
Length = 517
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 15 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 72
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 73 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 112
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 113 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 169
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 170 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 196
>gi|302795308|ref|XP_002979417.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
gi|300152665|gb|EFJ19306.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
Length = 749
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 129/230 (56%), Gaps = 48/230 (20%)
Query: 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
EL + L+++ LG+++PTPIQ ACIP A G+DI G+A TGSGKT AF LPI++RL
Sbjct: 121 ELNVSRPLLRACDALGYRQPTPIQAACIPLAL-AGRDICGSAVTGSGKTAAFALPILERL 179
Query: 98 LEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L + P+ +R LIITPTRELA+Q+ ++++A+ ++R
Sbjct: 180 L-------------------FRPRRIPAIRVLIITPTRELAVQLHSMIEKLAQFTDIRCS 220
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+VGG+S++ QE L+ P++VV TPGR+ + + + V L L+ VLDEADR++E
Sbjct: 221 LVVGGLSSKVQEVALRTHPDIVVATPGRMIDHLRNTQS--VGLEELAILVLDEADRLLEL 278
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G E+ ++ + P +RQT++FSAT+
Sbjct: 279 GFREEIHELVKLCP------------------------SRRQTMLFSATM 304
>gi|260495553|ref|ZP_05815678.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33]
gi|260196895|gb|EEW94417.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33]
Length = 528
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 116/190 (61%), Gaps = 24/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------------ENFENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +F+LDEAD M+
Sbjct: 109 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFILDEADEMLNM 165
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 166 GFVEDIEKIL 175
>gi|373495826|ref|ZP_09586379.1| hypothetical protein HMPREF0402_00252 [Fusobacterium sp. 12_1B]
gi|371966955|gb|EHO84433.1| hypothetical protein HMPREF0402_00252 [Fusobacterium sp. 12_1B]
Length = 527
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 114/191 (59%), Gaps = 24/191 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L +K++ + G+++PTPIQ IPA KDIIG A+TG+GKT AF LPI++
Sbjct: 7 FKKLGLGEKTIKALSKKGYEKPTPIQALTIPALLDGEKDIIGQAQTGTGKTAAFSLPILE 66
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
R + P ++A+++ PTRELA+QV + + +A G +R+
Sbjct: 67 R---------------------FEPGKVVQAIVLAPTRELAIQVAEEMNSLANGKKIRIT 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S E Q R LK +++VGTPGR+ +LM ++ L++L L +F+LDEAD M+
Sbjct: 106 PVYGGQSIEFQIRQLKKGTDIIVGTPGRVMDLM---DRKLIKLDNLKYFILDEADEMLNM 162
Query: 216 GHFRELQSIID 226
G +++ I++
Sbjct: 163 GFLEDVEKILE 173
>gi|253733085|ref|ZP_04867250.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
TCH130]
gi|253728993|gb|EES97722.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
TCH130]
Length = 517
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 15 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 72
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 73 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 112
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 113 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 169
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 170 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 196
>gi|196001667|ref|XP_002110701.1| hypothetical protein TRIADDRAFT_50105 [Trichoplax adhaerens]
gi|190586652|gb|EDV26705.1| hypothetical protein TRIADDRAFT_50105 [Trichoplax adhaerens]
Length = 722
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 135/238 (56%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I AW+E L L+ I L + EPTPIQ+ IP Q +DIIG AETGSGKT A
Sbjct: 288 IPNPLRAWSESELSKELLDIISDLKYNEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAA 346
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ + K++ E + YA +I+ PTRELA Q+ + K
Sbjct: 347 FLIPLLVWITS----LPKIVREADIDQGPYA-------IIMAPTRELAQQIEEEAARFGK 395
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ +R V ++GG++ E+Q LL+ E+V+ TPGRL +++ +LV L+ ++ VLDE
Sbjct: 396 PVGIRTVAVIGGLNREEQGFLLRQGCEIVIATPGRLLDVLDNS--YLV-LNQCTYVVLDE 452
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVS-SLQRKKRQTLVFSATI 265
ADRMI+ G ++QSI++ LP++N + Q + + + + RQT++F+AT+
Sbjct: 453 ADRMIDMGFEPDVQSILEYLPVSNQKPDTDDAQDPNKIRLKLGDKNRYRQTVMFTATM 510
>gi|336399893|ref|ZP_08580692.1| hypothetical protein HMPREF0404_02020 [Fusobacterium sp. 21_1A]
gi|336163533|gb|EGN66456.1| hypothetical protein HMPREF0404_02020 [Fusobacterium sp. 21_1A]
Length = 528
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 116/190 (61%), Gaps = 24/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + H++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------------ENFENLDHIQAIVLTPTRELALQVAEEMNSLSISKKMKVI 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +F+LDEAD M+
Sbjct: 109 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFILDEADEMLNM 165
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 166 GFVEDIEKIL 175
>gi|404368270|ref|ZP_10973627.1| hypothetical protein FUAG_02434 [Fusobacterium ulcerans ATCC 49185]
gi|313690084|gb|EFS26919.1| hypothetical protein FUAG_02434 [Fusobacterium ulcerans ATCC 49185]
Length = 527
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 114/191 (59%), Gaps = 24/191 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L +K++ + G+++PTPIQ IPA KDIIG A+TG+GKT AF LPI++
Sbjct: 7 FKKLGLGEKTIKALSKKGYEKPTPIQALTIPALLDGEKDIIGQAQTGTGKTAAFSLPILE 66
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
R + P ++A+++ PTRELA+QV + + +A G +R+
Sbjct: 67 R---------------------FEPGKVVQAIVLAPTRELAIQVAEEMNSLANGKKIRIT 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S E Q R LK +++VGTPGR+ +LM ++ L++L L +F+LDEAD M+
Sbjct: 106 PVYGGQSIEFQIRQLKKGTDIIVGTPGRVMDLM---DRKLIKLDNLKYFILDEADEMLNM 162
Query: 216 GHFRELQSIID 226
G +++ I++
Sbjct: 163 GFLEDVEKILE 173
>gi|428164262|gb|EKX33294.1| hypothetical protein GUITHDRAFT_81602 [Guillardia theta CCMP2712]
Length = 679
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 145/291 (49%), Gaps = 53/291 (18%)
Query: 20 EEELVSEAEI-STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
E E +A + S E ++ EL L L+K++ LGF +PT IQ IP A QGKD+ +
Sbjct: 98 EREYFDDAPVQSAETSSFQELHLSRPLLKAVSSLGFIKPTVIQSMVIPVAL-QGKDVCAS 156
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIITPTRELA 136
+ TGSGKT AF LPI++RLL Y P+ R L++TPTRELA
Sbjct: 157 SRTGSGKTAAFALPILERLL-------------------YRPRRVAATRVLVLTPTRELA 197
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
+Q ++++A ++R ++GG+ + QE L+ +P++VV TPGR+ + + +
Sbjct: 198 VQAHAMMEKLAAFTDIRCYIVIGGVKNQLQETELRKKPDVVVATPGRMIDHLRNAPG--I 255
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
L VLDEADR++E G E+Q ++ M P ++R
Sbjct: 256 GFEALEILVLDEADRLLEMGFTEEVQELVKMCP------------------------QQR 291
Query: 257 QTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAI 307
QT++FSAT+ D KL SL+ V SI T E G VA+
Sbjct: 292 QTMLFSATMTHDVD---KLAAFSLRRPVRVTADGSIRT-DETQGTLNKVAV 338
>gi|444318547|ref|XP_004179931.1| hypothetical protein TBLA_0C06160 [Tetrapisispora blattae CBS 6284]
gi|387512972|emb|CCH60412.1| hypothetical protein TBLA_0C06160 [Tetrapisispora blattae CBS 6284]
Length = 757
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 127/235 (54%), Gaps = 49/235 (20%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
+ +N L L ++K + LG+ +P+PIQ A IP A GKDII A TGSGKT AF +PI
Sbjct: 236 NTFNTLSLSRPVLKGLAALGYSKPSPIQSAAIPIALL-GKDIIAGAVTGSGKTAAFMIPI 294
Query: 94 MQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELALQVTDHLKEVAKGIN 151
++RLL Y P R +++TPTRELA+QV+D K+V K +N
Sbjct: 295 IERLL-------------------YKPAKVTSTRVIVLTPTRELAIQVSDVGKKVGKFVN 335
Query: 152 -VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210
V VGG++ +QE+ LK+RP++VV TPGR + + V+ ++ V+DEAD
Sbjct: 336 GVTFGLAVGGLNLRQQEQQLKSRPDIVVATPGRFIDHIRNSASFNVD--SVEILVIDEAD 393
Query: 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
RM+E+G EL I+ +LP KRQTL+FSAT+
Sbjct: 394 RMLEDGFQDELNEIMSLLP------------------------SKRQTLLFSATM 424
>gi|358056510|dbj|GAA97479.1| hypothetical protein E5Q_04157 [Mixia osmundae IAM 14324]
Length = 476
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 120/231 (51%), Gaps = 46/231 (19%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L P L +++ + ++PT +Q ACIP QG+D IG+A+TGSGKT+AF PI+
Sbjct: 2 SFDSLGLEPFLCRALDSMSIRKPTEVQAACIPPIL-QGRDCIGSAQTGSGKTIAFATPIL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q L E+ P G + AL++TPTRELA Q+ D + IN++
Sbjct: 61 QALAED-------------------PYG-IFALVLTPTRELAFQIADQFVALGTPINLQS 100
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+VGG+ Q L++RP +V+ TPGRL +LM + L F VLDEADRM+
Sbjct: 101 TVVVGGLDMMAQATALRSRPHVVIATPGRLVDLMRSNQNEF-SFARLRFLVLDEADRMLN 159
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
EL I+ LP K+RQTL+F+AT+
Sbjct: 160 PTFADELGYILAALP------------------------KERQTLLFTATV 186
>gi|15219185|ref|NP_173078.1| DEAD-box ATP-dependent RNA helicase 36 [Arabidopsis thaliana]
gi|75336890|sp|Q9SA27.1|RH36_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 36
gi|4966350|gb|AAD34681.1|AC006341_9 Similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family [Arabidopsis thaliana]
gi|332191310|gb|AEE29431.1| DEAD-box ATP-dependent RNA helicase 36 [Arabidopsis thaliana]
Length = 491
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 130/249 (52%), Gaps = 49/249 (19%)
Query: 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111
LG ++PTP+Q C+P G+D++G A+TGSGKT AF LPI+ RL E+
Sbjct: 76 LGMRKPTPVQTHCVPKIL-AGRDVLGLAQTGSGKTAAFALPILHRLAED----------- 123
Query: 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK 171
P G + AL++TPTRELA Q+ + K + +N+R IVGGM Q L
Sbjct: 124 --------PYG-VFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLV 174
Query: 172 ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231
+RP +V+ TPGR+ L+ F VLDEADR+++ G EL++I LP
Sbjct: 175 SRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLP-- 232
Query: 232 NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK--LKQSVNGL 289
K RQTL+FSAT ++++ + L+H S K ++ GL
Sbjct: 233 ----------------------KSRQTLLFSAT--MTSNLQALLEHSSNKAYFYEAYEGL 268
Query: 290 NSIETLSER 298
+++TL+++
Sbjct: 269 KTVDTLTQQ 277
>gi|168025828|ref|XP_001765435.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683285|gb|EDQ69696.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 535
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 130/230 (56%), Gaps = 23/230 (10%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L P L+K++ ++G+ +P+PIQ A IP Q +D+IG AETGSGKT AF LP++
Sbjct: 116 WAEGALSPELLKAVQKVGYTKPSPIQMAAIPIGLQQ-RDVIGIAETGSGKTAAFVLPMLT 174
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ + L EE E P A+++ PTRELA Q+ D + A +++RVV
Sbjct: 175 YISK--------LPPMTEEIEAEGPY----AVVMAPTRELAQQIEDETVKFAHFLDIRVV 222
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
IVGG S E+Q L+ E+V+ TPGRL + + E+ L+ ++ VLDEADRMI+
Sbjct: 223 SIVGGQSIEEQGFKLRQGCEVVIATPGRLLDCL---ERRYAVLNQCNYVVLDEADRMIDM 279
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++ ++D +P +N E + + T + R T +FSAT+
Sbjct: 280 GFEPQVMGVLDAMPSSNLKPENEDAELDT-------HKIYRTTYMFSATM 322
>gi|425738293|ref|ZP_18856558.1| hypothetical protein C273_07847 [Staphylococcus massiliensis S46]
gi|425479966|gb|EKU47136.1| hypothetical protein C273_07847 [Staphylococcus massiliensis S46]
Length = 495
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 124/214 (57%), Gaps = 48/214 (22%)
Query: 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111
+GFKEPTPIQ IP A +G DI+G A+TG+GKT AFG+P+++++++
Sbjct: 20 MGFKEPTPIQNDSIPYAL-EGVDILGQAQTGTGKTGAFGIPLIEKVVD------------ 66
Query: 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK 171
K ++ALI+ PTRELA+QV + ++E +KG NV+V + GGM ++Q + LK
Sbjct: 67 ---------KEGIQALILAPTRELAMQVAEQIREFSKGQNVQVATVFGGMPIDRQIKTLK 117
Query: 172 ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231
RP++VVGTPGR+ + + ++HTL +LDEAD M+ G +++ I+ LP
Sbjct: 118 RRPKIVVGTPGRVIDHLDRRTLKTNDIHTL---ILDEADEMMNMGFIDDMRYIMSKLP-- 172
Query: 232 NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+++RQT++FSAT+
Sbjct: 173 ---------------------KEQRQTMLFSATM 185
>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
gi|81675946|sp|Q5L3G9.1|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
Length = 467
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L +MK+I R+GF+E TPIQ IP + Q KD+IG A+TG+GKT AFG+PI++
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSL-QNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ ++AL++ PTRELA+QV++ L ++ VRV+
Sbjct: 63 KV--------------------NVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG E+Q R LK P ++VGTPGR+ + ++ G L +HT+ VLDEAD M+
Sbjct: 103 PIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTV---VLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P +RQTL+FSAT+
Sbjct: 160 GFIEDIEAILSHVPA------------------------ERQTLLFSATM 185
>gi|432850192|ref|XP_004066748.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX24-like [Oryzias latipes]
Length = 820
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 118/202 (58%), Gaps = 23/202 (11%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
L +++TPTRELA+QV H+ V K +++ +VGGM+ +KQ+R+LK PE+++ TPGR
Sbjct: 351 LLGMVLTPTRELAVQVKHHIDAVTKFTDIKTAILVGGMAQQKQKRMLKRCPEIIIATPGR 410
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
LW+L+ HL+ L L V+DEADRM+E GHF EL+S+++ML T+ +
Sbjct: 411 LWDLIKEKHPHLLNLRHLRCLVIDEADRMVERGHFAELESLLEMLNTTHFN--------- 461
Query: 244 TCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA 303
KRQT VFSAT+ L+ +L L+ K+++ + ++ L E+ G+++
Sbjct: 462 ----------PKRQTFVFSATLTLTHSLPSRL----LQKKKNLEKRSKLDILIEKVGIKS 507
Query: 304 NVAIVDLTNVSVLANKLEESFI 325
++DLT L E+ I
Sbjct: 508 KPKVIDLTRKEATVETLTETQI 529
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 51/75 (68%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
S+ + ++ AW +L + ++K++ LGF+ PTPIQ +P A D++GAAETGSG
Sbjct: 183 SDDDKQSDVSAWKDLFVPSSVLKALSSLGFESPTPIQALALPPAIRDHMDVLGAAETGSG 242
Query: 85 KTLAFGLPIMQRLLE 99
KTLAFG+P++ +LE
Sbjct: 243 KTLAFGIPMIHAILE 257
>gi|356522085|ref|XP_003529680.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Glycine
max]
Length = 701
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 135/241 (56%), Gaps = 27/241 (11%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
++I +WNE +L L+K++ + G+K P+PIQ A IP Q +D+IG AETGSGKT
Sbjct: 274 SKIPRPMRSWNESKLTSELLKAVEKAGYKTPSPIQMAAIPLGLQQ-RDVIGIAETGSGKT 332
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF LP++ + L E+ E P A+++ PTRELA Q+ D +
Sbjct: 333 AAFVLPMLSYITR--------LPPISEDNEAEGPY----AVVMAPTRELAQQIEDETVKF 380
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
A+ + ++VV IVGG S E+Q ++ E+V+ TPGRL + + E+ L+ ++ VL
Sbjct: 381 AQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCL---ERRYAVLNQCNYVVL 437
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK--RQTLVFSAT 264
DEADRMI+ G ++ ++D +P +N E + E+ L KK R T +FSAT
Sbjct: 438 DEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEE---------LDEKKIYRTTYMFSAT 488
Query: 265 I 265
+
Sbjct: 489 M 489
>gi|309776780|ref|ZP_07671754.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
3_1_53]
gi|308915528|gb|EFP61294.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
3_1_53]
Length = 438
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 128/230 (55%), Gaps = 47/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L + ++K+I G+ PTPIQ+ IP A QG+DI+G A+TG+GKT AF +P +Q
Sbjct: 3 FQTLNITEPILKAINEQGYLTPTPIQEQAIPYAL-QGRDILGCAQTGTGKTAAFSIPTIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
LL EK ++R+LI+TPTRELA+Q+ +++ AK +R
Sbjct: 62 -LLNRHEKR------------------YIRSLIVTPTRELAIQIQENICAYAKHTGIRSA 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ + QER+LKA +++V TPGRL +L+ G +V++ + F+LDEADRM++
Sbjct: 103 VIFGGVPQKPQERILKAGVDILVATPGRLNDLIQQG---IVDIGRIEIFILDEADRMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ +I LP KK+QTL FSAT+
Sbjct: 160 GFLPDVKRLIAKLP------------------------KKKQTLFFSATM 185
>gi|73662111|ref|YP_300892.1| ATP-dependent RNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123643052|sp|Q49Z29.1|Y802_STAS1 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SSP0802
gi|72494626|dbj|BAE17947.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 506
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 131/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + + +++ +GF E TPIQK IP A +GKD++G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDKMAETLQSMGFNEATPIQKESIPLAL-EGKDVLGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK A + +++LI+ PTRELA+QV + LK AKG N++VV
Sbjct: 62 --------------------EKVADQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM ++Q + LK P++VVGTPGR+ + ++ ++HTL +LDEAD M+
Sbjct: 102 TVFGGMPIDRQIKALKKGPQIVVGTPGRVIDHLNRRTLKTNDIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMKFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|170029482|ref|XP_001842621.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
quinquefasciatus]
gi|167863205|gb|EDS26588.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
quinquefasciatus]
Length = 815
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 145/240 (60%), Gaps = 16/240 (6%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
+I +W E +++ I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKT
Sbjct: 380 GKIPNPIRSWKESGFPKEVLEIIDKVGYKEPTPIQRQAIPIGL-QNRDIIGIAETGSGKT 438
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
LAF +P++ + G E+ E A++ P A+I+ PTRELA Q+ + ++
Sbjct: 439 LAFLIPLLNWI------QGLPKIERQETADQ-GPY----AIILAPTRELAQQIEEETQKF 487
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
+ + +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ V+
Sbjct: 488 GQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVM 544
Query: 207 DEADRMIENGHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
DEADRMI+ G ++Q I++ +P+TN + ++E + + ++K RQT++F+AT+
Sbjct: 545 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDATKLMENFNTKKKYRQTVMFTATM 604
>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 518
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 141/257 (54%), Gaps = 53/257 (20%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
+ + + L P ++++I LGF+E TPIQ IP A G+D+IG A+TG+GKT AFGLP
Sbjct: 1 MNTFADFGLEPKVLQAITELGFEEATPIQAKSIPIAL-SGRDLIGQAQTGTGKTAAFGLP 59
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
++ ++ +E ++ + AL++TPTRELA+QV + + ++++
Sbjct: 60 LINKIPKEEDR--------------------IVALVMTPTRELAIQVAEEIGKLSRFKGT 99
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R +PI GG +Q R LK +P++++GTPGRL + ++ + ++L + VLDEAD M
Sbjct: 100 RSLPIYGGQDIVRQIRALKKKPQIIIGTPGRLLDHIN---RKTIKLDDVKTVVLDEADEM 156
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----L 267
++ G ++QSI+ ++P + RQT++FSAT+ L
Sbjct: 157 LDMGFMDDIQSILKLVP------------------------EDRQTMLFSATMPANIQKL 192
Query: 268 SADFRKKLKHGSLKLKQ 284
+ F K +H S+ KQ
Sbjct: 193 AQQFLKNPEHVSVIPKQ 209
>gi|407475055|ref|YP_006789455.1| DEAD/DEAH box helicase [Clostridium acidurici 9a]
gi|407051563|gb|AFS79608.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium acidurici 9a]
Length = 526
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 127/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L+ ++K+I LGF+EP+ IQK IP +G D+IG A+TG+GKTLAFG P++
Sbjct: 6 FKDLGLNEDILKAINELGFEEPSKIQKEAIPVVL-EGFDVIGQAQTGTGKTLAFGAPVIN 64
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + G + +++ITPTRELA+QV D + + K VR +
Sbjct: 65 KIKKS--------------------TGKISSIVITPTRELAIQVNDEISRIGKYTRVRTL 104
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG ++Q R +K +++VGTPGR+ +L+ + +V+L ++F VLDEAD M++
Sbjct: 105 PVYGGKPIDRQIRAIKQGVDVLVGTPGRVLDLI---RRRVVDLSRVNFLVLDEADEMLDM 161
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II P + RQT++FSAT+
Sbjct: 162 GFIDDIEEIIRNCP------------------------EDRQTMLFSATM 187
>gi|420186291|ref|ZP_14692362.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM040]
gi|394252508|gb|EJD97540.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM040]
Length = 509
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYAL-EGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G++ +++LI+ PTRELA+QV + L+E +KG V+VV
Sbjct: 63 KVV-------------GQQG--------VQSLILAPTRELAMQVAEQLREFSKGQKVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|300120949|emb|CBK21191.2| unnamed protein product [Blastocystis hominis]
Length = 634
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 116/191 (60%), Gaps = 12/191 (6%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
++EA++ W E LH L++ + ++ +PT IQ+ I AA +GKD++GAA TGS
Sbjct: 129 IAEAKLLYGSTEWTEFHLHDSLVQKLTQIQCAKPTVIQEKAI-EAAFRGKDVLGAAPTGS 187
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKTLAF +P++ LL+ EE E+AE ++R +II+PTREL+LQ+ +
Sbjct: 188 GKTLAFCVPVIDWLLKHAS------EEPAEKAE-----WNVRCIIISPTRELSLQINRVI 236
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
+ + N+R ++GG++ KQER+L PE+++GTPGR+W M + L L F
Sbjct: 237 TRLTENTNIRTAGLIGGLAIPKQERMLSHNPEIIIGTPGRIWYFMENYKLGPSNLKNLRF 296
Query: 204 FVLDEADRMIE 214
V DEAD++++
Sbjct: 297 IVWDEADKLVQ 307
>gi|320355280|ref|YP_004196619.1| DEAD/DEAH box helicase [Desulfobulbus propionicus DSM 2032]
gi|320123782|gb|ADW19328.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
DSM 2032]
Length = 552
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 139/249 (55%), Gaps = 53/249 (21%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
LHP L++++ LGF +PTPIQ+A IP +G+D+IG A+TG+GKT AFGLP++QR+
Sbjct: 11 LHPDLVQTVTELGFTDPTPIQQAAIPLLL-EGRDLIGQAQTGTGKTAAFGLPLLQRITPR 69
Query: 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG 160
++ ++AL++ PTRELA+QV + ++ + + V+ + GG
Sbjct: 70 QQG--------------------VQALVLAPTRELAIQVAEAIQRYGQQRGITVLAVYGG 109
Query: 161 MSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 220
+ ++Q R L+ E++VGTPGRL +LM+ G ++L T+ VLDEAD M+ G +
Sbjct: 110 QAYQQQIRSLRQGVEVIVGTPGRLLDLMNQGT---LDLTTVRTVVLDEADEMLSMGFVED 166
Query: 221 LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSADFRKKL 275
++ I+D +P +RQT++FSATI+ LSA + +
Sbjct: 167 IELILDRIP------------------------AERQTMLFSATISKRVLGLSARYLRDP 202
Query: 276 KHGSLKLKQ 284
+ S+ KQ
Sbjct: 203 ETVSITPKQ 211
>gi|258516257|ref|YP_003192479.1| DEAD/DEAH box helicase [Desulfotomaculum acetoxidans DSM 771]
gi|257779962|gb|ACV63856.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
DSM 771]
Length = 539
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 130/231 (56%), Gaps = 49/231 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L+ +++++ +GF+EPTPIQ+ IP + +GKDIIG A+TG+GKT AF +P+++
Sbjct: 14 FGELTLNSRIVQALVNMGFEEPTPIQQKTIPISL-EGKDIIGQAQTGTGKTAAFAIPVLE 72
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ R ++ALIITPTRELA+QV + + + K +R +
Sbjct: 73 KIDSRR--------------------NGVQALIITPTRELAIQVAEEISNIGKYCRIRAL 112
Query: 156 PIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
PI GG S ++Q + LK R ++V+GTPGRL + + G L ++ T+ VLDEAD M++
Sbjct: 113 PIYGGQSIDRQIKALKQQRVQIVIGTPGRLLDHLRRGTLRLEQVATV---VLDEADEMLD 169
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I++ P T RQT +FSATI
Sbjct: 170 MGFIEDIEAILNQTPTT------------------------RQTFLFSATI 196
>gi|170083961|ref|XP_001873204.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650756|gb|EDR14996.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 355
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 124/226 (54%), Gaps = 42/226 (18%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
L+KSI LGF +PTPIQ A IP A GKD++G A TGSGKT AF +P+++RLL
Sbjct: 7 LLKSIASLGFNKPTPIQAAAIPVAL-LGKDVVGNAMTGSGKTAAFIIPMVERLL------ 59
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
EKG++A R L++ PTRELA+Q D +++ ++++ +VGG+S +
Sbjct: 60 ---YREKGKKA------AATRCLVLVPTRELAVQCFDVGVKLSTHTDIQLCLLVGGLSLK 110
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
QE L+ARP++V+ TPGRL + + L + VLDEADRM+ +G EL I
Sbjct: 111 SQEVALRARPDIVIATPGRLIDHIRNSPAF--TLDAIDILVLDEADRMLSDGFADELAEI 168
Query: 225 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
I P++ RQT++FSAT+ S D
Sbjct: 169 IKSCPVS------------------------RQTMLFSATMTDSVD 190
>gi|82751683|ref|YP_417424.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
gi|123548216|sp|Q2YUH3.1|Y1965_STAAB RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAB1965c
gi|82657214|emb|CAI81654.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
Length = 506
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+VV
Sbjct: 62 --------------------EKVVWKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 185
>gi|321466431|gb|EFX77426.1| hypothetical protein DAPPUDRAFT_213372 [Daphnia pulex]
Length = 478
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 117/232 (50%), Gaps = 47/232 (20%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+N L++ L+K I LG +PTP+Q CIPA G+D IG TGSGKT AF LPI+
Sbjct: 10 TFNSLKIDEWLIKQIKNLGVDKPTPVQINCIPAIL-DGRDCIGCDRTGSGKTFAFALPIV 68
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q L ++ P G + AL++TPTRELA Q+ D + + K IN+R+
Sbjct: 69 QTLSKD-------------------PYG-IYALVLTPTRELAYQIADQFQIIGKPINLRM 108
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
IVGGM Q L P +V+ TPGRL + + + T+ + V+DEADR++E
Sbjct: 109 SVIVGGMGMMDQGIELSNHPHIVIATPGRLADHLESCKTF--SFKTIKYLVMDEADRLLE 166
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
+LQ I LP +KRQTL+FSATI
Sbjct: 167 GNFDEQLQIIFQALP------------------------EKRQTLLFSATIT 194
>gi|366986679|ref|XP_003673106.1| hypothetical protein NCAS_0A01550 [Naumovozyma castellii CBS 4309]
gi|342298969|emb|CCC66713.1| hypothetical protein NCAS_0A01550 [Naumovozyma castellii CBS 4309]
Length = 748
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 126/234 (53%), Gaps = 45/234 (19%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
+ +N L L ++K + LG+ +P+PIQ A IP A GKDII A TGSGKT AF +P
Sbjct: 225 YANFNSLSLSRPVLKGLATLGYTKPSPIQSATIPVALS-GKDIIAGAVTGSGKTAAFMIP 283
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN- 151
+++RLL K A R +++TPTRELA+Q++D K++ K IN
Sbjct: 284 VIERLL-----------------FKSAKIAATRVIVLTPTRELAIQISDVGKKIGKFING 326
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+ VGG++ +QE+ LKARP++V+ TPGR + + V+ ++ V+DEADR
Sbjct: 327 ITFGLAVGGLNLRQQEQELKARPDIVIATPGRFIDHIRNSASFNVD--SVEILVIDEADR 384
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
M+E G EL I+ +LP KRQTL+FSAT+
Sbjct: 385 MLEEGFQEELNEIMQLLP------------------------NKRQTLLFSATM 414
>gi|193214029|ref|YP_001995228.1| DEAD/DEAH box helicase [Chloroherpeton thalassium ATCC 35110]
gi|193087506|gb|ACF12781.1| DEAD/DEAH box helicase domain protein [Chloroherpeton thalassium
ATCC 35110]
Length = 431
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 128/231 (55%), Gaps = 44/231 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + L+P +++++ LG++ PT IQ A IP A GKDI+ A+TG+GKT AF LPI+
Sbjct: 6 FESISLNPSILRALKELGYETPTAIQAAAIPEAI-LGKDILATAQTGTGKTAAFALPILH 64
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL E R + AP RALI+TPTRELALQ+ ++++ A+ + +R
Sbjct: 65 RLGENRSY------------DIRAP----RALILTPTRELALQIDNNIRLYARYLRLRTG 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I+GG+ Q ++L+ P+++V TPGRL +L G + L + FVLDEADRM++
Sbjct: 109 VIMGGVPAHPQIKMLRRNPDILVATPGRLIDLFDQG---FIGLDQIQTFVLDEADRMLDM 165
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +++ I SLQ + QTL+FSAT++
Sbjct: 166 GFIDDIRRI------------------------ESLQPRDHQTLLFSATLS 192
>gi|195115088|ref|XP_002002099.1| GI14145 [Drosophila mojavensis]
gi|193912674|gb|EDW11541.1| GI14145 [Drosophila mojavensis]
Length = 837
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 147/240 (61%), Gaps = 16/240 (6%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
+I +W+E P +++ I +G+KEPTPIQ+ IP Q +DIIG AETGSGKT
Sbjct: 402 GKIPNPIRSWSESGFPPEIIEIIDSVGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKT 460
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
LAF +P++ + + K+ E+ E+ ++ P A+I+ PTRELA Q+ + +
Sbjct: 461 LAFLIPLLSWI----QSLPKI--ERLEDVDQ-GP----YAIIMAPTRELAQQIEEETIKF 509
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
+ + +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VL
Sbjct: 510 GQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVL 566
Query: 207 DEADRMIENGHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
DEADRMI+ G ++Q I++ +P+TN + ++E + + ++K RQT++F+AT+
Sbjct: 567 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDEKKLMENFYTKKKYRQTVMFTATM 626
>gi|57867605|ref|YP_189253.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
RP62A]
gi|293366046|ref|ZP_06612734.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646901|ref|ZP_12296753.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU144]
gi|417660218|ref|ZP_12309807.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU045]
gi|417908989|ref|ZP_12552739.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU037]
gi|417912456|ref|ZP_12556148.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU105]
gi|418613191|ref|ZP_13176207.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU117]
gi|418617909|ref|ZP_13180795.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU120]
gi|418622358|ref|ZP_13185110.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU123]
gi|418627678|ref|ZP_13190250.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU126]
gi|418629929|ref|ZP_13192422.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU127]
gi|420164449|ref|ZP_14671178.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM095]
gi|420166528|ref|ZP_14673212.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM088]
gi|420169264|ref|ZP_14675867.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM087]
gi|420171687|ref|ZP_14678222.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM070]
gi|420173608|ref|ZP_14680099.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM067]
gi|420186914|ref|ZP_14692938.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM039]
gi|420195899|ref|ZP_14701683.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM021]
gi|420207903|ref|ZP_14713388.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM008]
gi|420210262|ref|ZP_14715691.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM003]
gi|420212518|ref|ZP_14717867.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM001]
gi|420215194|ref|ZP_14720465.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH05005]
gi|420216699|ref|ZP_14721897.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH05001]
gi|420223686|ref|ZP_14728581.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH08001]
gi|420226143|ref|ZP_14730965.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH06004]
gi|420230941|ref|ZP_14735618.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH04003]
gi|420235977|ref|ZP_14740508.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH051475]
gi|81673916|sp|Q5HME0.1|Y1688_STAEQ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SERP1688
gi|57638263|gb|AAW55051.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
epidermidis RP62A]
gi|291319769|gb|EFE60127.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329726161|gb|EGG62633.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU144]
gi|329734135|gb|EGG70453.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU045]
gi|341650668|gb|EGS74484.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU105]
gi|341654629|gb|EGS78368.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU037]
gi|374816627|gb|EHR80828.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU117]
gi|374817170|gb|EHR81356.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU120]
gi|374826952|gb|EHR90827.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU123]
gi|374829124|gb|EHR92938.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU126]
gi|374832448|gb|EHR96158.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU127]
gi|394231554|gb|EJD77180.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM095]
gi|394231727|gb|EJD77351.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM087]
gi|394233535|gb|EJD79136.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM088]
gi|394236802|gb|EJD82305.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM070]
gi|394239645|gb|EJD85080.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM067]
gi|394256880|gb|EJE01804.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM039]
gi|394262500|gb|EJE07262.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM021]
gi|394274923|gb|EJE19318.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM008]
gi|394276496|gb|EJE20834.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM003]
gi|394279639|gb|EJE23942.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM001]
gi|394282474|gb|EJE26667.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH05005]
gi|394287184|gb|EJE31151.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH08001]
gi|394291378|gb|EJE35190.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH05001]
gi|394292629|gb|EJE36369.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH06004]
gi|394295824|gb|EJE39460.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH04003]
gi|394301613|gb|EJE45068.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH051475]
Length = 509
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYAL-EGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G++ +++LI+ PTRELA+QV + L+E +KG V+VV
Sbjct: 63 KVV-------------GQQG--------VQSLILAPTRELAMQVAEQLREFSKGQKVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|416128218|ref|ZP_11597223.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis
FRI909]
gi|319399568|gb|EFV87823.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis
FRI909]
Length = 509
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYAL-EGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G++ +++LI+ PTRELA+QV + L+E +KG V+VV
Sbjct: 63 KVV-------------GQQG--------VQSLILAPTRELAMQVAEQLREFSKGQKVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTQGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|380690627|gb|AFD93382.1| DEAD box ATP-dependent RNA helicase, partial [Cydia pomonella]
Length = 459
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 141/243 (58%), Gaps = 16/243 (6%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
+ +I +W E H +M I ++G+K PTPIQ+ IP Q +DIIG AETGS
Sbjct: 104 IKGGKIPNPIRSWKEAGFHSDIMDIINKVGYKSPTPIQRQAIPIGL-QNRDIIGVAETGS 162
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKTLAF +P++ ++ K +M E+A++ P A+I+ PTRELA Q+ +
Sbjct: 163 GKTLAFLIPLLT-WIQSLPKNERM-----EDADQ-GP----YAIILAPTRELAQQIEEET 211
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
+ + + V +VGG+S E+Q L+ E+V+ TPGRL +++ E + L+ ++
Sbjct: 212 NKFGVPLGITSVVVVGGLSREEQGFKLRLGCEIVIATPGRLIDVL---ENRYLVLNRCTY 268
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262
VLDEADRMI+ G ++Q I++ +P++N + +E + + ++K RQT++F+
Sbjct: 269 VVLDEADRMIDMGFEPDVQKILEYMPVSNIKPDTDAAEDASVLLANYNSKKKYRQTVMFT 328
Query: 263 ATI 265
AT+
Sbjct: 329 ATM 331
>gi|443729582|gb|ELU15447.1| hypothetical protein CAPTEDRAFT_224580 [Capitella teleta]
Length = 648
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 137/231 (59%), Gaps = 16/231 (6%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E ++ L+ I ++G+ EPTPIQ+ IP Q +DIIG AETGSGKT AF +P++
Sbjct: 221 WRESKICTELLDIIEKIGYTEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAAFLIPLLT 279
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ G E+ E+A+ Y P ALI+ PTRELA Q+ + + ++ V
Sbjct: 280 WI------QGLPKIERMEDAD-YGP----YALILAPTRELAQQIEEETIRFGGPLGMKTV 328
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
++GG+S E+Q L+ E+V+ TPGRL +++ K+LV LH ++ VLDEAD+MI
Sbjct: 329 AVIGGLSREEQGFKLRQGCEVVIATPGRLIDVLEN--KYLV-LHRCTYVVLDEADKMINM 385
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATI 265
G E+Q+I+ LP+TN + + + + + + + K RQT++F+AT+
Sbjct: 386 GFEPEVQNILKFLPVTNEKPDSEEAEDAEFLLSNFMSKNKFRQTVMFTATM 436
>gi|251812202|ref|ZP_04826675.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
gi|251804299|gb|EES56956.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
Length = 528
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 23 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYAL-EGDDILGQAQTGTGKTGAFGIPLIE 81
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G++ +++LI+ PTRELA+QV + L+E +KG V+VV
Sbjct: 82 KVV-------------GQQG--------VQSLILAPTRELAMQVAEQLREFSKGQKVQVV 120
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 121 TVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTL---ILDEADEMMNM 177
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 178 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 204
>gi|255561546|ref|XP_002521783.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223538996|gb|EEF40593.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 714
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 135/241 (56%), Gaps = 27/241 (11%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
++I +W E +L P L+K++ R G+++P+PIQ A IP Q +D+IG AETGSGKT
Sbjct: 287 SKIPRPMRSWPESKLTPELLKAVERAGYEKPSPIQMAAIPLGLQQ-RDVIGIAETGSGKT 345
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF LP++ + L E+ E P A+++ PTRELA Q+ D +
Sbjct: 346 AAFVLPMLTYI--------SRLPPMSEDNEAEGPY----AVVMAPTRELAQQIEDETVKF 393
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
A + ++VV IVGG S E+Q ++ E+V+ TPGRL + + E+ L+ ++ VL
Sbjct: 394 AHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLLDCL---ERRYAVLNQCNYVVL 450
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK--RQTLVFSAT 264
DEADRMI+ G ++ ++D +P +N E + E+ L KK R T +FSAT
Sbjct: 451 DEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEE---------LDEKKIYRTTYMFSAT 501
Query: 265 I 265
+
Sbjct: 502 M 502
>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
Length = 533
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 140/250 (56%), Gaps = 53/250 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + L P ++++I LGF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP++
Sbjct: 4 FADFGLEPRVLQAITELGFEEATPIQSQSIPIAL-TGKDMIGQAQTGTGKTAAFGLPLIH 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E E+ + ALI+TPTRELA+QV + + ++++ +R +
Sbjct: 63 KIAKEEER--------------------IVALIMTPTRELAIQVAEEIGKLSRFKGIRSL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG +Q R LK +P++++GTPGRL + ++ + + L + VLDEAD M++
Sbjct: 103 AIYGGQDIGRQIRALKRKPQIIIGTPGRLLDHIN---RKTIRLDDVQTVVLDEADEMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++QSI+ ++P ++RQTL+FSAT+ L++
Sbjct: 160 GFMEDIQSILKLVP------------------------EERQTLLFSATMPANIQKLASQ 195
Query: 271 FRKKLKHGSL 280
F K+ +H S+
Sbjct: 196 FLKEPEHVSV 205
>gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 425
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 131/231 (56%), Gaps = 51/231 (22%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+N+L L + KS+ +GF+ PTPIQK IP A +G DI+G A+TG+GKT AFG+PI++
Sbjct: 15 FNQLDLK--VQKSLEEMGFESPTPIQKEAIPLAL-EGYDIVGQAQTGTGKTAAFGIPIIE 71
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ RE+ ++A+++TPTRELA+QV L + K V
Sbjct: 72 NI-NSRERG-------------------VKAIVLTPTRELAIQVAHELSLIGKNKGVSAY 111
Query: 156 PIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
PI GG+S E+Q +LK R ++VVGTPGR+ +L+S G L++L + F VLDEAD+M++
Sbjct: 112 PIYGGVSIERQANILKRGRNQIVVGTPGRVKDLISRG---LLKLDRVRFAVLDEADQMLD 168
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ P +++QTL+FSAT+
Sbjct: 169 MGFIEDIEEILSKTP------------------------REKQTLLFSATM 195
>gi|420198021|ref|ZP_14703739.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM020]
gi|420228554|ref|ZP_14733304.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH05003]
gi|394264952|gb|EJE09618.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM020]
gi|394294660|gb|EJE38328.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH05003]
Length = 509
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYAL-EGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G++ +++LI+ PTRELA+QV + L+E +KG V+VV
Sbjct: 63 KVV-------------GQQG--------VQSLILAPTRELAMQVAEQLREFSKGQKVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|350272013|ref|YP_004883321.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
gi|348596855|dbj|BAL00816.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
Length = 435
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 126/230 (54%), Gaps = 47/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K++ R G+ PTPIQ+ IP Q +D+IG A+TG+GKT AF LPI+Q
Sbjct: 3 FKELNLTAPILKAVDRQGYTTPTPIQQKAIPILL-QKRDLIGCAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L ER K ++ALI+TPTRELA+Q+ ++ + + +R
Sbjct: 62 NLASERRKG-------------------IKALILTPTRELAIQIQENFEHYGTHLPLRCT 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S Q L+ ++++ TPGRL +L++ G V++ + FVLDEADRM++
Sbjct: 103 VIFGGVSQVPQVERLRRGVDILIATPGRLCDLINQG---YVDISQIEVFVLDEADRMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G R+++ +++ LP KKRQTL+FSAT+
Sbjct: 160 GFIRDVKKVLNALP------------------------KKRQTLLFSATM 185
>gi|433447995|ref|ZP_20411254.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
gi|431999627|gb|ELK20547.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
Length = 471
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E L P LMK++ ++GF+E TPIQ A IP + Q +D+IG A+TG+GKT AFG+P+++
Sbjct: 7 FKEFGLSPELMKAVSKMGFEEATPIQAATIPLSL-QNRDVIGQAQTGTGKTAAFGIPLIE 65
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + +A ++A+++ PTRELA+QV++ L ++ VRV+
Sbjct: 66 KI------------DMNNDA--------VQAIVVAPTRELAIQVSEELYKIGSTKRVRVL 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG E+Q R LK P ++VGTPGR+ + + L +HT+ VLDEAD M+
Sbjct: 106 PIYGGQDIERQIRALKKHPHIIVGTPGRVLDHIQRRTLRLQNVHTV---VLDEADEMLNM 162
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P +RQTL+FSAT+
Sbjct: 163 GFVEDIEAILSHVPT------------------------ERQTLLFSATM 188
>gi|420178510|ref|ZP_14684840.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM057]
gi|420181304|ref|ZP_14687507.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM053]
gi|420200772|ref|ZP_14706412.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM031]
gi|394246233|gb|EJD91494.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM057]
gi|394246652|gb|EJD91906.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM053]
gi|394267516|gb|EJE12103.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM031]
Length = 509
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYAL-EGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G++ +++LI+ PTRELA+QV + L+E +KG V+VV
Sbjct: 63 KVV-------------GQQG--------VQSLILAPTRELAMQVAEQLREFSKGQKVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|282876512|ref|ZP_06285378.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
epidermidis SK135]
gi|417656935|ref|ZP_12306613.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU028]
gi|417913851|ref|ZP_12557512.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU109]
gi|418413340|ref|ZP_12986582.1| hypothetical protein HMPREF9281_02186 [Staphylococcus epidermidis
BVS058A4]
gi|418604120|ref|ZP_13167487.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU041]
gi|418624602|ref|ZP_13187275.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU125]
gi|418663726|ref|ZP_13225235.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU081]
gi|419768504|ref|ZP_14294626.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-250]
gi|419771588|ref|ZP_14297639.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-K]
gi|420182053|ref|ZP_14688195.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM049]
gi|420202795|ref|ZP_14708383.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM018]
gi|420220941|ref|ZP_14725896.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH04008]
gi|420233548|ref|ZP_14738156.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH051668]
gi|421608789|ref|ZP_16050002.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
AU12-03]
gi|281294764|gb|EFA87292.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
epidermidis SK135]
gi|329735713|gb|EGG71996.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU028]
gi|341654309|gb|EGS78056.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU109]
gi|374405916|gb|EHQ76827.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU041]
gi|374411264|gb|EHQ81981.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU081]
gi|374827164|gb|EHR91030.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU125]
gi|383359868|gb|EID37278.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-250]
gi|383361086|gb|EID38468.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-K]
gi|394250517|gb|EJD95699.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM049]
gi|394268974|gb|EJE13519.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM018]
gi|394285391|gb|EJE29470.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH04008]
gi|394299830|gb|EJE43358.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH051668]
gi|406655530|gb|EKC81956.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
AU12-03]
gi|410879227|gb|EKS27078.1| hypothetical protein HMPREF9281_02186 [Staphylococcus epidermidis
BVS058A4]
Length = 509
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYAL-EGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G++ +++LI+ PTRELA+QV + L+E +KG V+VV
Sbjct: 63 KVV-------------GQQG--------VQSLILAPTRELAMQVAEQLREFSKGQKVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 493
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 137/263 (52%), Gaps = 48/263 (18%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+ A S FD++ LHP +++++ G+ +PTPIQ A IP G+D++GAA+TG+G
Sbjct: 7 APANESVTFDSFG---LHPDVLRALTESGYTKPTPIQAAAIPVVT-AGRDVMGAAQTGTG 62
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHL 143
KT F LPI+ LL + + +P H +RALI+TPTRELA QV D++
Sbjct: 63 KTAGFSLPIIHNLLPDANTSA-------------SPARHPVRALILTPTRELADQVYDNV 109
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
+ AK +R + GG+ Q L+ E++V TPGRL + + ++ V L +
Sbjct: 110 AKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV---QQRSVNLSQVRM 166
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
VLDEADRM++ G +LQ II++LP RQTL+FSA
Sbjct: 167 LVLDEADRMLDMGFLPDLQRIINLLPA------------------------HRQTLLFSA 202
Query: 264 TIALSADFRKKLKHGSLKLKQSV 286
T + KKL L+ Q++
Sbjct: 203 TFSPEI---KKLAASYLRHPQTI 222
>gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
Length = 754
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 126/241 (52%), Gaps = 42/241 (17%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
ST D + ++ L ++K+I LGF +PTPIQ + IP A GKDI+G A TGSGKT AF
Sbjct: 170 STTCDTFLQMNLSRPILKAISSLGFTKPTPIQASTIPVALL-GKDIVGNAVTGSGKTAAF 228
Query: 90 GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 149
+P+++RLL EKG+ A R LI+ PTRELA+Q + K +
Sbjct: 229 MIPMLERLL---------YREKGKRA------AATRCLILLPTRELAVQCYEVGKRLGAH 273
Query: 150 INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209
+++ +VGG+S + QE L+ RP++V+ TPGRL + + L +L VLDEA
Sbjct: 274 TDIQFCLLVGGLSLKAQEAALRQRPDVVLATPGRLIDHVRNSVG--FNLDSLDILVLDEA 331
Query: 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269
DRM+ G EL II P K RQT++FSAT+ S
Sbjct: 332 DRMLSEGFADELTEIIKACP------------------------KSRQTMLFSATMTDSV 367
Query: 270 D 270
D
Sbjct: 368 D 368
>gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N]
gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
Length = 477
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 132/250 (52%), Gaps = 44/250 (17%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
S A S E + + LHPLL+KSI G+ PTPIQ IP A +G+D++GAA+TG+G
Sbjct: 6 SSAAPSAEALTFADFGLHPLLLKSIAETGYTSPTPIQAQAIPVVA-EGRDVMGAAQTGTG 64
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHL 143
KT AF LPI+ RL+ + +P H +RALI+TPTRELA QV +++
Sbjct: 65 KTAAFTLPILHRLMPLANSSA-------------SPARHPVRALILTPTRELADQVYENV 111
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
K + +R + GG+ Q+ L+ E++V TPGRL + + E+ V L +
Sbjct: 112 KRYSLHTPLRSAVVFGGVDIGPQKEALRQGCEVLVATPGRLLDHV---EQKNVNLSQVGI 168
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
VLDEADRM++ G +L+ II +LP +RQ L+FSA
Sbjct: 169 LVLDEADRMLDMGFLPDLERIIRLLP------------------------PQRQGLLFSA 204
Query: 264 TIALSADFRK 273
T S + RK
Sbjct: 205 T--FSNEIRK 212
>gi|418633569|ref|ZP_13195977.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU129]
gi|420190985|ref|ZP_14696922.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM037]
gi|420204908|ref|ZP_14710446.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM015]
gi|374838907|gb|EHS02440.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU129]
gi|394258083|gb|EJE02975.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM037]
gi|394271629|gb|EJE16118.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM015]
Length = 509
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDKTVQTLETMGFKEPTPIQKDSIPYAL-EGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G++ +++LI+ PTRELA+QV + L+E +KG V+VV
Sbjct: 63 KVV-------------GQQG--------VQSLILAPTRELAMQVAEQLREFSKGQKVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|418609346|ref|ZP_13172499.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU065]
gi|374407748|gb|EHQ78596.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU065]
Length = 509
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYAL-EGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G++ +++LI+ PTRELA+QV + L+E +KG V+VV
Sbjct: 63 KVV-------------GQQG--------VQSLILAPTRELAMQVAEQLREFSKGQKVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|170040294|ref|XP_001847939.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
gi|167863866|gb|EDS27249.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
Length = 818
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 145/240 (60%), Gaps = 16/240 (6%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
+I +W E +++ I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKT
Sbjct: 383 GKIPNPIRSWKESGFPKEVLEIIDKVGYKEPTPIQRQAIPIGL-QNRDIIGIAETGSGKT 441
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
LAF +P++ + G E+ E A++ P A+I+ PTRELA Q+ + ++
Sbjct: 442 LAFLIPLLNWI------QGLPKIERQETADQ-GPY----AIILAPTRELAQQIEEETQKF 490
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
+ + +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ V+
Sbjct: 491 GQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVM 547
Query: 207 DEADRMIENGHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
DEADRMI+ G ++Q I++ +P+TN + ++E + + ++K RQT++F+AT+
Sbjct: 548 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDATKLMENFNTKKKYRQTVMFTATM 607
>gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae]
Length = 469
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 129/250 (51%), Gaps = 57/250 (22%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
PD EE V+ W++L L +L K+ +L +K P+ IQ+ IP A QGKDI
Sbjct: 31 PDPIEEAPVT----------WSDLGLVDVLCKACEQLKWKTPSKIQRESIPVAL-QGKDI 79
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135
IG AETGSGKT AF LPI+Q LLE P+ H ALI+TPTREL
Sbjct: 80 IGLAETGSGKTAAFALPILQALLEN-------------------PQRHF-ALILTPTREL 119
Query: 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
A Q+++ + + GI V+ + IVGG+ Q +L +P +++ TPGRL + +S +
Sbjct: 120 AFQISEQFEALGSGIGVKSIVIVGGLDMTSQALMLAKKPHIIIATPGRLVDHLSNTKG-- 177
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK 255
L L F V+DEADR++ E+ I+ ++P ++
Sbjct: 178 FNLRALKFLVMDEADRILNMDFEAEVDKILKVIP------------------------RE 213
Query: 256 RQTLVFSATI 265
R+T +FSAT+
Sbjct: 214 RRTFLFSATM 223
>gi|356565647|ref|XP_003551050.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like isoform 1
[Glycine max]
gi|356565649|ref|XP_003551051.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like isoform 2
[Glycine max]
Length = 706
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 135/241 (56%), Gaps = 27/241 (11%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
++I +WNE +L L+K++ + G+K P+PIQ A IP Q +D+IG AETGSGKT
Sbjct: 279 SKIPRPMRSWNESKLTNELLKAVEKAGYKTPSPIQMAAIPLGLQQ-RDVIGIAETGSGKT 337
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF LP++ + L E+ E P A+++ PTRELA Q+ D +
Sbjct: 338 AAFVLPMLSYITR--------LPPISEDNEAEGPY----AVVMAPTRELAQQIEDETVKF 385
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
A+ + ++VV IVGG S E+Q ++ E+V+ TPGRL + + E+ L+ ++ VL
Sbjct: 386 AQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCL---ERRYAVLNQCNYVVL 442
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK--RQTLVFSAT 264
DEADRMI+ G ++ ++D +P +N E + E+ L KK R T +FSAT
Sbjct: 443 DEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEE---------LDEKKIYRTTYMFSAT 493
Query: 265 I 265
+
Sbjct: 494 M 494
>gi|367006707|ref|XP_003688084.1| hypothetical protein TPHA_0M00750 [Tetrapisispora phaffii CBS 4417]
gi|357526391|emb|CCE65650.1| hypothetical protein TPHA_0M00750 [Tetrapisispora phaffii CBS 4417]
Length = 762
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 153/285 (53%), Gaps = 44/285 (15%)
Query: 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111
L F +PT IQ IP A +G+DI+G A TGSGKTLA+G+PI++ LL + K+
Sbjct: 205 LAFTKPTEIQMKAIPHAL-KGEDIMGKASTGSGKTLAYGIPILENLL----RTAKV---- 255
Query: 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI----NVRVVPIVGGMSTEKQE 167
+A K ALI TPTRELA QVT HL++++K I ++ + GG+S +KQ+
Sbjct: 256 --DANKPI------ALIFTPTRELAQQVTQHLQKISKLIIEKNPYSILSLTGGLSIQKQQ 307
Query: 168 RLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 225
RLLK + +VV TPGR EL+ + + VLDEADR++++GHF E ++I+
Sbjct: 308 RLLKYKGSGRVVVATPGRFLELLEKDNTLIDRFAKIDTLVLDEADRLLQDGHFDEFENIL 367
Query: 226 DMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSL---KL 282
L N EG + K QT++FSAT S D KL + KL
Sbjct: 368 KHLNNANKKMEGTA---------------KWQTMIFSAT--FSIDLFDKLASSNWKNKKL 410
Query: 283 KQSVNGLNSI-ETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
++ + +N + + L + ++ I+D ++ +++E+ IE
Sbjct: 411 DENESEMNVVLKHLMNKIQFKSKPVIIDTNPEQKVSEQVKEALIE 455
>gi|241766543|ref|ZP_04764404.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241363218|gb|EER58791.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 415
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 130/233 (55%), Gaps = 46/233 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++ L L P L+++ +GF PTP+Q A IPA +G D++G+A+TGSGKT AF LP++Q
Sbjct: 3 FSALGLSPALVQAATAMGFSAPTPVQSAAIPAVL-RGADVLGSAQTGSGKTAAFALPLLQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI--NVR 153
RL + + A + H+RALI+ PTRELA QV + ++ + +G+ V+
Sbjct: 62 RLQADAQNAPR----------------HVRALILVPTRELAAQVGEVIRSLGRGLPQPVK 105
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
V + GG+S Q L+ ++VV TPGRL +L+ E + + L ++ VLDEADR++
Sbjct: 106 VAVVFGGVSINPQMMGLRGGADVVVATPGRLLDLV---EHNALRLGSVEHLVLDEADRLL 162
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
+ G ELQ I+ +LP+ +RQ L+FSAT A
Sbjct: 163 DLGFAEELQRILQLLPV------------------------RRQNLLFSATFA 191
>gi|420174249|ref|ZP_14680702.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM061]
gi|420193514|ref|ZP_14699365.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM023]
gi|394245183|gb|EJD90500.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM061]
gi|394259781|gb|EJE04612.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM023]
Length = 509
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYAL-EGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G++ +++LI+ PTRELA+QV + L+E +KG V+VV
Sbjct: 63 KVV-------------GQQG--------VQSLILAPTRELAMQVAEQLREFSKGQKVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|418327507|ref|ZP_12938660.1| DEAD/DEAH box helicase [Staphylococcus epidermidis 14.1.R1.SE]
gi|418614642|ref|ZP_13177605.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU118]
gi|418632462|ref|ZP_13194893.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU128]
gi|365232865|gb|EHM73840.1| DEAD/DEAH box helicase [Staphylococcus epidermidis 14.1.R1.SE]
gi|374819532|gb|EHR83654.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU118]
gi|374832369|gb|EHR96084.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU128]
Length = 509
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYAL-EGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G++ +++LI+ PTRELA+QV + L+E +KG V+VV
Sbjct: 63 KVV-------------GQQG--------VQSLILAPTRELAMQVAEQLREFSKGQKVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|307167913|gb|EFN61290.1| Probable ATP-dependent RNA helicase DDX49 [Camponotus floridanus]
Length = 457
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 138/270 (51%), Gaps = 51/270 (18%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E +++L+L+ L+ +G K PT IQ+ CIP G+D IG A+TGSGKTLAF L
Sbjct: 3 EIKDFSDLKLNSWLLAQCDTMGLKNPTLIQQNCIPRIL-AGEDCIGCAKTGSGKTLAFAL 61
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
PI+Q+L E+ P G + AL++TPTRELA Q+ D + K IN
Sbjct: 62 PILQKLCED-------------------PYG-IFALVLTPTRELAFQIADQFAAIGKAIN 101
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
++ +VGGM Q L RP +VV TPGRL + + + L + F VLDEADR
Sbjct: 102 LKKCVVVGGMDMMVQGLELSKRPHIVVATPGRLADHLDSCDTF--SLQKIKFLVLDEADR 159
Query: 212 MIENGHF-RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
++ GHF ++L+ I +P K++Q L+FSAT+ + D
Sbjct: 160 LL-GGHFDKQLKKIFAAVP------------------------KQKQVLLFSATMTDALD 194
Query: 271 FRKKLKHGSLKL--KQSVNGLNSIETLSER 298
K++ + + ++ G+ ++ L +R
Sbjct: 195 KVKQIASSKVFIWEEEDDAGIATVRELDQR 224
>gi|418326967|ref|ZP_12938142.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU071]
gi|365224073|gb|EHM65343.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU071]
Length = 509
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYAL-EGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G++ +++LI+ PTRELA+QV + L+E +KG V+VV
Sbjct: 63 KVV-------------GQQG--------VQSLILAPTRELAMQVAEQLREFSKGQKVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 185
>gi|300856701|ref|YP_003781685.1| RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
Length = 525
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 127/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++L L P ++++I +GF+EP+ IQ IP G D+IG A+TG+GKTLAFG P++
Sbjct: 6 FSDLNLDPKVLQAIDDMGFEEPSQIQAESIPVIL-DGNDVIGQAQTGTGKTLAFGAPMLS 64
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + + H+ ALI+TPTRELA+QV D L +AK V ++
Sbjct: 65 KITTKSK--------------------HISALIVTPTRELAIQVNDELSRIAKFKKVALL 104
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG ++Q R LK ++VVGTPGR+ + + ++ ++L + F +LDEAD M++
Sbjct: 105 PIYGGQPIDRQIRSLKRGMDVVVGTPGRILDHI---KRKTLDLSNIEFLILDEADEMLDM 161
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++II TN RQTL+FSAT+
Sbjct: 162 GFIEDIENII---KATNSD---------------------RQTLLFSATM 187
>gi|257064977|ref|YP_003144649.1| DNA/RNA helicase [Slackia heliotrinireducens DSM 20476]
gi|256792630|gb|ACV23300.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
20476]
Length = 657
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 129/236 (54%), Gaps = 48/236 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++E L + ++Y LG++EPTPIQ+ IP +G+D+I AA+TG+GKT AF LP M
Sbjct: 9 FDESGLSATALAAVYDLGYEEPTPIQQQAIPVVL-EGRDLIAAAKTGTGKTAAFALPTMD 67
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII-TPTRELALQVTDHLKEVAKGINVRV 154
+L YA KG ++I TPTRELA+Q+++ + +AK N RV
Sbjct: 68 KL-------------------PYAGKGEGPVMVIVTPTRELAMQISEVCETIAKRTNHRV 108
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V ++GG+S Q + L++ ++++ TPGRL +LM +H +L + VLDEADRM++
Sbjct: 109 VTLLGGVSYTPQIKKLRSGCDIIIATPGRLLDLM---RQHEADLDLVQVLVLDEADRMLD 165
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
G + ++ I+D P +RQTL+FSATI S D
Sbjct: 166 MGFWPQVSEIVDATP------------------------SERQTLLFSATIDRSQD 197
>gi|302915827|ref|XP_003051724.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732663|gb|EEU46011.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 714
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 17/231 (7%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L P L+ + ++G+KEPTPIQ+A IP A Q +D+IG A TGSGKT AF LP++
Sbjct: 280 WRESNLPPRLLSVVDQVGYKEPTPIQRAAIPIAL-QARDLIGVAVTGSGKTAAFLLPLLV 338
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ + LE+ + YA LI+ PTREL Q+ K+ A+ + R V
Sbjct: 339 YISDL-----PPLEDHNKNDGPYA-------LILAPTRELVQQIETEAKKFAEPLGFRCV 386
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
IVGG S E+Q L+ E++V TPGRL + + E+ L+ L + ++DEADRMI+
Sbjct: 387 SIVGGHSLEEQAYALRNGAEIIVATPGRLVDCI---ERRLLVLGQCCYVIMDEADRMIDL 443
Query: 216 GHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G + I+D LP++N + +E Q + RQT++++AT+
Sbjct: 444 GFEESVNKILDALPVSNEKPDTDDAENAQLMKRYLGGNDRYRQTMMYTATM 494
>gi|195484183|ref|XP_002090584.1| GE13195 [Drosophila yakuba]
gi|194176685|gb|EDW90296.1| GE13195 [Drosophila yakuba]
Length = 821
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 146/238 (61%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +W+E ++ I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKTLA
Sbjct: 388 IPNPIRSWSESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLA 446
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ + + K+ E+ E+ ++ P A+I+ PTRELA Q+ + + +
Sbjct: 447 FLIPLLSWI----QSLPKI--ERLEDVDQ-GPY----AIIMAPTRELAQQIEEETTKFGQ 495
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VLDE
Sbjct: 496 PLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVLDE 552
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATI 265
ADRMI+ G ++Q I++ +P+TN + + + +T + + +KK RQT++F+AT+
Sbjct: 553 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATM 610
>gi|392531372|ref|ZP_10278509.1| ATP-dependent RNA helicase; cold shock [Carnobacterium
maltaromaticum ATCC 35586]
gi|414082690|ref|YP_006991393.1| DEAD/DEAH box helicase [Carnobacterium maltaromaticum LMA28]
gi|412996269|emb|CCO10078.1| DEAD/DEAH box helicase family protein [Carnobacterium
maltaromaticum LMA28]
Length = 541
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 127/231 (54%), Gaps = 50/231 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L P L++S+ RLGF+E TPIQ+ IP A +GKD+IG A+TG+GKT AFGLP++Q
Sbjct: 3 FSELGLDPELLQSVERLGFEEATPIQEQTIPLAL-EGKDVIGQAQTGTGKTAAFGLPMLQ 61
Query: 96 RL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
++ L+ R G L+I PTRELA+Q + L +++ VRV
Sbjct: 62 KIDLKNRAVQG---------------------LVIAPTRELAIQTQEELFRLSRDKKVRV 100
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG +Q R LK +P +VVGTPGRL + ++ + ++L + VLDEAD M+
Sbjct: 101 QVVYGGADISRQIRSLKDQPHIVVGTPGRLLDHIN---RRTLKLDQVETLVLDEADEMLN 157
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II +P T RQTL+FSAT+
Sbjct: 158 MGFLEDIEKIIKEVPKT------------------------RQTLLFSATM 184
>gi|389873083|ref|YP_006380502.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
gi|388538332|gb|AFK63520.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
Length = 476
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 131/242 (54%), Gaps = 44/242 (18%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
F+++ E+ LHP L+K++ G+ +PTPIQ+ +P G+DI+GAA+TG+GKT AF LP
Sbjct: 15 FESFTEVGLHPDLLKAVMASGYTKPTPIQEQAMPLIM-DGRDIMGAAQTGTGKTAAFTLP 73
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGIN 151
++ RL+ + +P H +RALI+ PTRELA QV + +K +
Sbjct: 74 LLHRLMPMANSS-------------MSPARHPVRALILAPTRELADQVAESVKRYSHSSP 120
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+RV + GG+ Q L+ EL++ TPGRL + + E+ V L +S VLDEADR
Sbjct: 121 LRVAVVFGGVDMNAQRDQLRKGCELLIATPGRLLDHI---EQKNVSLSQVSVLVLDEADR 177
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
M++ G +L+ I+ +LP K RQ+L+FSAT S D
Sbjct: 178 MLDMGFLPDLERIVRLLP------------------------KPRQSLLFSAT--FSNDI 211
Query: 272 RK 273
RK
Sbjct: 212 RK 213
>gi|344230065|gb|EGV61950.1| DEAD-domain-containing protein [Candida tenuis ATCC 10573]
Length = 448
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 124/231 (53%), Gaps = 44/231 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL + L +S+ + +PT IQ ACIP +GKD IG A+TGSGKT+AFGLP++
Sbjct: 4 FHELGVADWLCESLNSMKIHKPTSIQAACIPEVL-KGKDCIGGAKTGSGKTIAFGLPMLH 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ E+ P G + L++TPTRELALQ+ + V +N+RV
Sbjct: 63 KWSED-------------------PFG-VYGLVLTPTRELALQIAEQFSAVGSSMNIRVK 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWE-LMSGGEKHLVELHTLSFFVLDEADRMIE 214
IVGG +Q ++ +P ++ TPGRL + +++ GE + L + F VLDEADR++
Sbjct: 103 VIVGGEDMIEQALAIQKKPHFIIATPGRLADHILNSGEDTINGLRRIKFLVLDEADRLLS 162
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
N ++L I ++LP KKRQTL+F+AT+
Sbjct: 163 NSFGKDLDRIFNVLP----------------------DSKKRQTLLFTATV 191
>gi|242241488|ref|ZP_04795933.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
gi|242235031|gb|EES37342.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
Length = 528
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++++ +GFKEPTPIQK IP A +G DI+G A+TG+GKT AFG+P+++
Sbjct: 23 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYAL-EGDDILGQAQTGTGKTGAFGIPLIE 81
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+++ G++ +++LI+ PTRELA+QV + L+E +KG V+VV
Sbjct: 82 KVV-------------GQQG--------VQSLILAPTRELAMQVAEQLREFSKGQKVQVV 120
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 121 TVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTL---ILDEADEMMNM 177
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +EQ RQT++FSAT+
Sbjct: 178 GFIDDMRFIMDKIP---------AEQ--------------RQTMLFSATM 204
>gi|194880138|ref|XP_001974373.1| GG21122 [Drosophila erecta]
gi|190657560|gb|EDV54773.1| GG21122 [Drosophila erecta]
Length = 816
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 146/238 (61%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +W+E ++ I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKTLA
Sbjct: 383 IPNPIRSWSESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLA 441
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ + + K+ E+ E+ ++ P A+I+ PTRELA Q+ + + +
Sbjct: 442 FLIPLLSWI----QSLPKI--ERLEDVDQ-GP----YAIIMAPTRELAQQIEEETTKFGQ 490
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VLDE
Sbjct: 491 PLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVLDE 547
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATI 265
ADRMI+ G ++Q I++ +P+TN + + + +T + + +KK RQT++F+AT+
Sbjct: 548 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATM 605
>gi|350632267|gb|EHA20635.1| hypothetical protein ASPNIDRAFT_190556 [Aspergillus niger ATCC
1015]
Length = 795
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 151/271 (55%), Gaps = 20/271 (7%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W+E L LM+ I R+G+KEPTPIQ+A IP A Q +D+IG A TGSGKT AF LP++
Sbjct: 358 SWDESNLPKRLMELINRVGYKEPTPIQRAAIPIAM-QNRDLIGVAVTGSGKTAAFLLPLL 416
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ E + +E E G A+++ PTRELA Q+ K+ + V
Sbjct: 417 CYIAEL---------PRIDEFEWRKADGPY-AIVLAPTRELAQQIEIEAKKFTGPLGFNV 466
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V IVGG S E+Q L+ E+++ TPGRL + + E+ ++ L + ++DEADRMI+
Sbjct: 467 VSIVGGHSLEEQAYSLRDGAEIIIATPGRLVDCI---ERRILVLSQCCYVIMDEADRMID 523
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVT--VSSLQRKKRQTLVFSATIALSAD-- 270
G + I+D LP++N + + + ++ ++ Q + RQT++++AT+ + +
Sbjct: 524 LGFEEPVNKILDALPVSNEKPDSEDAENPLAMSRHINHDQHRYRQTMMYTATMPTAVERI 583
Query: 271 FRKKLKHGSLKLKQSVNGLNSIETLSERAGM 301
RK L+ ++ S +++T+ +R M
Sbjct: 584 ARKYLRRPAIVTIGSAG--EAVDTVEQRVEM 612
>gi|344171941|emb|CCA84567.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia syzygii R24]
Length = 481
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 132/255 (51%), Gaps = 48/255 (18%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
FD + LHP +++++ G+ PTPIQ A IP G+D++GAA+TG+GKT F LP
Sbjct: 3 FDTFG---LHPDILRALAESGYTRPTPIQAAAIPVVV-AGRDVMGAAQTGTGKTAGFSLP 58
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGIN 151
I+Q LL E + +P H +RALI+TPTRELA QV D++ + K
Sbjct: 59 IIQNLLPEANTSA-------------SPARHPVRALILTPTRELADQVYDNVAKYGKYTA 105
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+R + GG+ Q L+ E++V TPGRL + + ++ V L + VLDEADR
Sbjct: 106 LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV---QQRSVNLSQVRMLVLDEADR 162
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
M++ G +LQ II++LP RQTL+FSAT +
Sbjct: 163 MLDMGFLPDLQRIINLLP------------------------AHRQTLLFSATFSPEI-- 196
Query: 272 RKKLKHGSLKLKQSV 286
KKL L+ Q++
Sbjct: 197 -KKLAASYLRHPQTI 210
>gi|302833349|ref|XP_002948238.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
nagariensis]
gi|300266458|gb|EFJ50645.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
nagariensis]
Length = 836
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 139/269 (51%), Gaps = 55/269 (20%)
Query: 23 LVSEAEISTEFDA--WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
S+ T+F + + +L L L+K++ LG+K PTPIQ ACIP A G+DI G+A
Sbjct: 161 FYSDTPEGTKFSSSSFADLNLSRPLLKAVEALGYKTPTPIQAACIPLALA-GRDICGSAV 219
Query: 81 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELALQ 138
TGSGKT AF LP ++RLL + P+G L++TPTRELA+Q
Sbjct: 220 TGSGKTAAFALPFLERLL-------------------HRPRGLAATYVLVLTPTRELAVQ 260
Query: 139 VTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
+ ++++A+ +V V IVGG+S Q L+ PE+VV TPGRL + + + V L
Sbjct: 261 IHSMIEKLAQFTDVTVALIVGGLSLSVQAATLRKLPEVVVATPGRLIDHLRNSQS--VGL 318
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 258
L+ VLDEADR++E G E+ ++ P KKRQT
Sbjct: 319 EDLAVLVLDEADRLLEMGFRDEVMEVVRCAP------------------------KKRQT 354
Query: 259 LVFSATIALSADFRKKLKHGSLKLKQSVN 287
++FSAT S R + SL LKQ V
Sbjct: 355 MLFSAT--FSDQVRDLV---SLSLKQPVR 378
>gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
Length = 535
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 137/254 (53%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E L P ++++I LGF+E TPIQ IP A G D+IG A+TG+GKT AFG+P++
Sbjct: 4 FAEFGLEPKVLQAITELGFEESTPIQDKSIPIAM-AGSDMIGQAQTGTGKTAAFGIPLIN 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ E+ + ALI+TPTRELA+QV D + ++ K +R +
Sbjct: 63 KISINEER--------------------IVALIMTPTRELAIQVADEIGKLTKYKGLRSL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK +P++++GTPGRL + ++ + ++L + VLDEAD M++
Sbjct: 103 PIYGGQEIGRQIRALKKKPQIIIGTPGRLLDHIN---RKTIKLEDVQTVVLDEADEMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++QSI+ +P ++RQTL+FSAT+ L+
Sbjct: 160 GFMEDIQSILKQVP------------------------EERQTLLFSATMPPNIQKLAQQ 195
Query: 271 FRKKLKHGSLKLKQ 284
F K +H ++ KQ
Sbjct: 196 FLKNPEHVAVISKQ 209
>gi|379725028|ref|YP_005317159.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|386727777|ref|YP_006194103.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|378573700|gb|AFC34010.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384094902|gb|AFH66338.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
Length = 422
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 130/232 (56%), Gaps = 46/232 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L+L P ++K++ + + +PTPIQ+ IP G+D+ G A+TG+GKT AF LPI+Q
Sbjct: 3 FQQLQLIPPIIKALAKENYTQPTPIQEQAIPPVL-AGRDLFGCAQTGTGKTAAFLLPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH--LRALIITPTRELALQVTDHLKEVAKGINVR 153
L ++ + P G +R+LI+TPTRELA+Q++D+ K N+R
Sbjct: 62 LLSTQQGR----------------PNGKRVIRSLILTPTRELAIQISDNAKAYGCFTNLR 105
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
IVGG+S QE+LL+ ++++ TPGRL +LM+ G V+L + VLDEADRM+
Sbjct: 106 YGVIVGGVSQRPQEQLLEQGMDILIATPGRLIDLMNQG---FVDLSHVQILVLDEADRML 162
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G +++ II LP+ KRQTL FSAT+
Sbjct: 163 DMGFIHDMKRIIAKLPV------------------------KRQTLFFSATM 190
>gi|340728741|ref|XP_003402675.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Bombus
terrestris]
Length = 452
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 125/244 (51%), Gaps = 52/244 (21%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ L L L++ +G K PTPIQK CIP G D IG A+TGSGKTLAF LPI+
Sbjct: 2 SFAALNLSSWLVQQCNFMGLKCPTPIQKNCIPKIL-AGDDCIGCAKTGSGKTLAFALPIL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q+L E+ P G + ALI+TPTRELA Q+ D + K I ++
Sbjct: 61 QKLSED-------------------PYG-IFALILTPTRELAFQIADQFSAIGKSIGLKK 100
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
IVGGM Q L P +VV TPGRL + + + L + F VLDEADR++E
Sbjct: 101 CVIVGGMDMVVQGLELSKHPHIVVATPGRLADHLESC--NTFSLKQIKFLVLDEADRLLE 158
Query: 215 NGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
GHF + L++I + LP K++Q L+FSAT+ + D
Sbjct: 159 -GHFDDQLKTIFEALP------------------------KRKQMLLFSATMTDTLD--- 190
Query: 274 KLKH 277
K+KH
Sbjct: 191 KVKH 194
>gi|346979571|gb|EGY23023.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Verticillium
dahliae VdLs.17]
Length = 683
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 130/231 (56%), Gaps = 17/231 (7%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+E L L+ ++R+G+ EPTPIQ+A IP A Q +D+IG A TGSGKT +F LP++
Sbjct: 260 WDESGLPSRLLDIVHRVGYNEPTPIQRAAIPIAL-QARDLIGVAVTGSGKTASFLLPLLV 318
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ + L GE + P G LI+ PTREL Q+ + A + RVV
Sbjct: 319 YISD--------LPPLGEMNKNDGPYG----LILAPTRELVQQIESEANKFATPLGFRVV 366
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
IVGG S E+Q L+ E++V TPGRL + + E+ L+ L + ++DEADRMI+
Sbjct: 367 SIVGGHSLEEQAFALRNGAEIIVATPGRLVDCI---ERRLLVLGQCCYVIMDEADRMIDL 423
Query: 216 GHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G + I+D LP+TN + ++E Q + + RQT++++AT+
Sbjct: 424 GFEEPVNKILDALPVTNEKPDTDEAENAQLMKRYLGGKDRYRQTMMYTATM 474
>gi|19113831|ref|NP_592919.1| ATP-dependent RNA helicase Dbp10 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|1175401|sp|Q09719.1|DBP10_SCHPO RecName: Full=ATP-dependent RNA helicase dbp10
gi|914885|emb|CAA90465.1| ATP-dependent RNA helicase Dbp10 (predicted) [Schizosaccharomyces
pombe]
Length = 848
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 128/239 (53%), Gaps = 47/239 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + L+ L+++I++ GFK PTPIQ+ IP +G+D++G A TGSGKT AF +P+++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLL-EGRDVVGMARTGSGKTAAFVIPMIE 129
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L + + RALI++P RELALQ +K+ +KG ++R V
Sbjct: 130 HL------------------KSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSV 171
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
IVGG+S E+Q LL +P++VV TPGR L + +EL ++ + V DEADR+ E
Sbjct: 172 AIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKV---EMKLELSSIEYVVFDEADRLFEM 228
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRK 273
G +L I+ LP + RQTL+FSAT+ + DF K
Sbjct: 229 GFAAQLTEILHALPTS------------------------RQTLLFSATLPRTLVDFAK 263
>gi|328865714|gb|EGG14100.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 1076
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 125/238 (52%), Gaps = 55/238 (23%)
Query: 39 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLL 98
+ LH L K++ + GFK+PTPIQ+ IP +G+D++G A TGSGKT AF +P++Q+L
Sbjct: 273 MDLHKFLFKAVMKKGFKQPTPIQRLTIPLIL-EGQDVVGMARTGSGKTAAFVIPMIQKLA 331
Query: 99 EEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIV 158
+ K G RA+I++PTRELALQ +KE++ G ++R IV
Sbjct: 332 QHSHKVG------------------ARAIILSPTRELALQTYRVVKELSSGSDLRSCVIV 373
Query: 159 GGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE----LHTLSFFVLDEADRMIE 214
GG + Q L P++++ TPGRL HL E LHT+ + V DEADR+ E
Sbjct: 374 GGDNMADQFTELARNPDIIIATPGRLVH-------HLTEVNMGLHTVQYIVFDEADRLFE 426
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI-ALSADF 271
G +LQ II L + RQTL+FSAT+ ++ A+F
Sbjct: 427 MGFADQLQEIITKLSPS------------------------RQTLLFSATLPSMLAEF 460
>gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis]
gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis]
Length = 515
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 141/285 (49%), Gaps = 53/285 (18%)
Query: 13 SNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
++ PD++EE +EA + W +L L+ L K+ L +K P+ IQK IP A QG
Sbjct: 41 TSDPDESEE---TEAPKCEQLQTWKDLGLNETLCKACEELKWKAPSKIQKEAIPVAL-QG 96
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132
KDIIG AETGSGKT AF LPI+ LLE P+ + AL++TPT
Sbjct: 97 KDIIGLAETGSGKTGAFALPILHALLEN-------------------PQRYF-ALVLTPT 136
Query: 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192
RELA Q+ + + + GI ++ +VGGM Q L +P +++ TPGRL + + +
Sbjct: 137 RELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENLK 196
Query: 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQ 252
L + + V+DEADR++ EL I+ +LP
Sbjct: 197 G--FNLKAIKYLVMDEADRILNMDFEVELDKILKVLP----------------------- 231
Query: 253 RKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSE 297
++R+T +FSAT+ KKL+ SLK V N +T+ +
Sbjct: 232 -RERRTFLFSATMTKKV---KKLQRASLKDPVKVEVSNKYQTVDQ 272
>gi|352684524|ref|YP_004896509.1| DEAD/DEAH box helicase [Acidaminococcus intestini RyC-MR95]
gi|350279179|gb|AEQ22369.1| DEAD/DEAH helicase [Acidaminococcus intestini RyC-MR95]
Length = 537
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 134/244 (54%), Gaps = 52/244 (21%)
Query: 22 ELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAET 81
E ++E I+T + +L L ++ ++ +GF+EP+PIQK IP A +G DIIG A+T
Sbjct: 4 EPMTEPTITT----FEDLNLDKKILSALKDMGFEEPSPIQKGAIPLAL-EGDDIIGQAQT 58
Query: 82 GSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTD 141
G+GKT AFG+PI+Q + E+ H++AL+++PTREL +QV +
Sbjct: 59 GTGKTAAFGIPIIQSIDEKNR--------------------HVQALVMSPTRELCIQVAE 98
Query: 142 HLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
+ ++ + V V+P+ GG E+Q R LK ++V+GTPGRL + + G L +H
Sbjct: 99 EISKIGRLKRVHVLPVYGGQPIERQIRSLKHGVQVVIGTPGRLLDHLRRGTISLDHIH-- 156
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
F VLDEAD M++ G ++++II +P +RQT++F
Sbjct: 157 -FLVLDEADEMLDMGFIEDIETIIKEVP------------------------PERQTMLF 191
Query: 262 SATI 265
SAT+
Sbjct: 192 SATM 195
>gi|145257496|ref|XP_001401758.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Aspergillus
niger CBS 513.88]
gi|143359821|sp|A2QIL2.1|PRP28_ASPNC RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
gi|134058672|emb|CAK38656.1| unnamed protein product [Aspergillus niger]
Length = 810
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 151/271 (55%), Gaps = 20/271 (7%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W+E L LM+ I R+G+KEPTPIQ+A IP A Q +D+IG A TGSGKT AF LP++
Sbjct: 373 SWDESNLPKRLMELINRVGYKEPTPIQRAAIPIAM-QNRDLIGVAVTGSGKTAAFLLPLL 431
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ E + +E E G A+++ PTRELA Q+ K+ + V
Sbjct: 432 CYIAEL---------PRIDEFEWRKADGPY-AIVLAPTRELAQQIEIEAKKFTGPLGFNV 481
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V IVGG S E+Q L+ E+++ TPGRL + + E+ ++ L + ++DEADRMI+
Sbjct: 482 VSIVGGHSLEEQAYSLRDGAEIIIATPGRLVDCI---ERRILVLSQCCYVIMDEADRMID 538
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVT--VSSLQRKKRQTLVFSATIALSAD-- 270
G + I+D LP++N + + + ++ ++ Q + RQT++++AT+ + +
Sbjct: 539 LGFEEPVNKILDALPVSNEKPDSEDAENPLAMSRHINHDQHRYRQTMMYTATMPTAVERI 598
Query: 271 FRKKLKHGSLKLKQSVNGLNSIETLSERAGM 301
RK L+ ++ S +++T+ +R M
Sbjct: 599 ARKYLRRPAIVTIGSAG--EAVDTVEQRVEM 627
>gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 436
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 132/249 (53%), Gaps = 40/249 (16%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
+SE S ++ L L P L++ + LG+ +PTPIQ IPA G+DI+ A+TGS
Sbjct: 1 MSEHADSAANHGFSSLSLRPELLQVLTALGYSQPTPIQTQAIPAIL-AGQDIMAGAQTGS 59
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-------LRALIITPTRELA 136
GKT AF LPI+ +L E + L+EK ++ E AP +RAL++TPTRELA
Sbjct: 60 GKTAAFSLPILHKLTEPLLR----LDEKNQQ-ESEAPSCSQVPAIRAIRALVLTPTRELA 114
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
LQV + AK ++ + GG+S + Q ++L A +++V TPGRL + + G L
Sbjct: 115 LQVHGSFVKYAKLTQLKSALVYGGVSIDAQAQILAAGVDILVATPGRLLDHLRRGSMSLS 174
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
EL F V DEADRM++ G E+ +I+ LP K R
Sbjct: 175 ELE---FLVFDEADRMLDMGFKDEIDAIVKQLP------------------------KTR 207
Query: 257 QTLVFSATI 265
QTL+FSAT
Sbjct: 208 QTLLFSATF 216
>gi|50286247|ref|XP_445552.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661437|sp|Q6FW42.1|DRS1_CANGA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49524857|emb|CAG58463.1| unnamed protein product [Candida glabrata]
Length = 725
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 126/233 (54%), Gaps = 49/233 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+N+L L +MK + LG+ +P+PIQ A IP A GKDII A TGSGKT AF +PI++
Sbjct: 208 FNDLALSRPVMKGLSNLGYVKPSPIQSATIPIALL-GKDIIAGAVTGSGKTAAFMIPIIE 266
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIITPTRELALQVTDHLKEVAKGI-NV 152
RLL Y P R +++TPTRELA+QV D K++ + + N+
Sbjct: 267 RLL-------------------YKPAKVASTRVIVLTPTRELAIQVADVGKKIGQFVSNL 307
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
VGG++ +QE++LK RP++V+ TPGR + + V+ ++ V+DEADRM
Sbjct: 308 TFGLAVGGLNLRQQEQMLKTRPDIVIATPGRFIDHIRNSASFNVD--SVEVLVIDEADRM 365
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+E+G EL I+ +LP KRQTL+FSAT+
Sbjct: 366 LEDGFQDELNEIMSLLP------------------------SKRQTLLFSATM 394
>gi|375007039|ref|YP_004980670.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359285886|gb|AEV17570.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 467
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 127/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L +MK+I R+GF+E TPIQ IP + Q KD+IG A+TG+GKT AFG+PI++
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSL-QNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ ++AL++ PTRELA+QV++ L ++ VRV+
Sbjct: 63 KV--------------------NVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG ++Q R LK P ++VGTPGR+ + ++ G L +HT+ VLDEAD M+
Sbjct: 103 PIYGGQDIDRQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTV---VLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P +RQTL+FSAT+
Sbjct: 160 GFIEDIEAILSHVPA------------------------ERQTLLFSATM 185
>gi|312898631|ref|ZP_07758021.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
gi|310620550|gb|EFQ04120.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
Length = 522
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 132/233 (56%), Gaps = 46/233 (19%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
+ + L++ +++ ++ +GF+EPTPIQ+ IP A +G D+IG A+TG+GKT A+G+P
Sbjct: 6 LEKFKNLQISDVIINALNDMGFEEPTPIQEGSIPVAL-EGHDMIGQAQTGTGKTAAYGIP 64
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+++++L AG APK L+++I++PTRELA+QV + + +A+ V
Sbjct: 65 VLEKIL----AAG-------------APK-ELQSVILSPTRELAIQVAEEINHLAQYTPV 106
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ +PI GG E+Q R L+ P+++V TPGRL + M G V+L ++S VLDEAD M
Sbjct: 107 QALPIYGGQDMERQLRRLRKSPQIIVATPGRLIDHMKRG---TVKLSSISTIVLDEADEM 163
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G ++ I+ P T RQTL+FSAT+
Sbjct: 164 LNMGFIDDINLIMSATPET------------------------RQTLLFSATM 192
>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
Length = 467
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L +MK+I R+GF+E TPIQ IP + Q KD+IG A+TG+GKT AFG+PI++
Sbjct: 4 FQELGLSKEVMKAIERMGFEETTPIQAKTIPLSL-QNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ G ++AL++ PTRELA+QV++ L ++ VRV+
Sbjct: 63 KV--------------------DVKNGAIQALVVAPTRELAIQVSEELYKIGAVKRVRVL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG E+Q R LK P ++VGTPGR+ + ++ G L + T+ VLDEAD M+
Sbjct: 103 PIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVRTV---VLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P +RQTL+FSAT+
Sbjct: 160 GFIEDIEAILRHVPT------------------------ERQTLLFSATM 185
>gi|354580517|ref|ZP_08999422.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353202948|gb|EHB68397.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 529
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 138/250 (55%), Gaps = 53/250 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + L P ++++I LGF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP++
Sbjct: 4 FADFGLEPRVLQAITELGFEEATPIQSQSIPIAL-TGKDMIGQAQTGTGKTAAFGLPLIH 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E E+ + AL++TPTRELA+QV + + ++++ +R +
Sbjct: 63 KIAKEEER--------------------IVALVMTPTRELAIQVAEEIGKLSRFKGIRSL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG +Q R LK +P++++GTPGRL + ++ + + L + VLDEAD M++
Sbjct: 103 AIYGGQDIGRQIRALKKKPQIIIGTPGRLLDHIN---RKTIRLDDVQTVVLDEADEMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++QSI+ ++P + RQTL+FSAT+ L++
Sbjct: 160 GFMDDIQSILKLVP------------------------ENRQTLLFSATMPPNIQKLASQ 195
Query: 271 FRKKLKHGSL 280
F K +H S+
Sbjct: 196 FLKDPEHVSV 205
>gi|300120104|emb|CBK19658.2| unnamed protein product [Blastocystis hominis]
Length = 620
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 141/241 (58%), Gaps = 27/241 (11%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+E +HP ++++I LGFKEPTPIQ+ IP +G D+IG A+TGSGKT AF +P++Q
Sbjct: 181 WSEAAVHPAILRAIETLGFKEPTPIQRQAIPIEL-KGMDMIGIAKTGSGKTCAFVVPMLQ 239
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA-------- 147
+++ +E + + E +G L A+++ PTRELA Q+ D +++A
Sbjct: 240 YVIQ------APIETRLQSKE----QGPL-AVVMAPTRELAKQIRDDAEKLAQFCVDERL 288
Query: 148 ---KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204
+ +R+ +VGG S +Q L ++++GTPGRL + + E+H V L+ ++
Sbjct: 289 AQSRSPRIRIACMVGGESIVEQSSFLSNGCDILIGTPGRLLDCL---ERHFVVLNQTNYI 345
Query: 205 VLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
VLDEADRMI+ G + +++D + T S E + + + V+SL R T++FSAT
Sbjct: 346 VLDEADRMIDEGFEESVNAVMDAMGSTLKSEE-EEDIEKAAEGVASLTNMYRTTIMFSAT 404
Query: 265 I 265
+
Sbjct: 405 M 405
>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 487
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 129/243 (53%), Gaps = 47/243 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + L P ++K++ G+ PTPIQ IP QG+D++GAA+TG+GKT F LPI+Q
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVL-QGRDVMGAAQTGTGKTAGFSLPIIQ 76
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRV 154
RLL+ + +P H +RALI+TPTRELA QV D++ + +R
Sbjct: 77 RLLQH-------------ASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRS 123
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG+ Q +L+A E+V+ TPGRL + + ++ V L V+DEADRM++
Sbjct: 124 TVVFGGVDMAPQTAILRAGVEIVIATPGRLLDHV---QQKTVNLSQTQILVMDEADRMLD 180
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSA 269
G +LQ II++LP K+RQ L+FSAT + L+A
Sbjct: 181 MGFLPDLQRIINLLP------------------------KQRQNLLFSATFSPEIKKLAA 216
Query: 270 DFR 272
F+
Sbjct: 217 SFQ 219
>gi|392597372|gb|EIW86694.1| DEAD-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 750
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 120/232 (51%), Gaps = 42/232 (18%)
Query: 39 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLL 98
+ L L K++ LGF +PTPIQ A IP A GKDI+G A TGSGKT AF +P+++RLL
Sbjct: 183 MNLSRPLQKALTTLGFNKPTPIQVAAIPVALI-GKDIVGNAVTGSGKTAAFVIPMLERLL 241
Query: 99 EEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIV 158
EKG+ A R LI+ PTREL +Q + +++A + R+ +V
Sbjct: 242 ---------YREKGKSA------AATRCLILVPTRELGVQCYEVAQKLAAYTDARIALVV 286
Query: 159 GGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 218
GG+S + QE L+ RP++V+ TPGRL + + L L VLDEADRM+ G
Sbjct: 287 GGLSLKSQEAALRTRPDVVIATPGRLVDHIHNSPS--FNLDALDILVLDEADRMLSEGFA 344
Query: 219 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
EL II P K RQT++FSAT+ S D
Sbjct: 345 DELSEIIKACP------------------------KSRQTMLFSATMTDSVD 372
>gi|381182260|ref|ZP_09891076.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
gi|380317854|gb|EIA21157.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
Length = 502
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 131/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++E L ++KS+ R+GF+E TPIQ+ IP GKD+IG A+TG+GKT AFGLP++Q
Sbjct: 4 FSEFGLDEKIVKSVERMGFEEATPIQEKTIPIGL-AGKDLIGQAQTGTGKTAAFGLPMIQ 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ ++ G ++ALII PTRELA+QV++ L +++ +VRV+
Sbjct: 63 KIDQK--------------------NGDVQALIIAPTRELAIQVSEELYKLSYDKHVRVL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK +P++VVGTPGR+ + ++ + ++L + VLDEAD M+
Sbjct: 103 AVYGGSDISRQIRSLKKKPQIVVGTPGRILDHIN---RRTLKLDNVQTLVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++SI+ +P +RQTL+FSAT+
Sbjct: 160 GFIDDIESILKEVP------------------------SERQTLLFSATM 185
>gi|212555986|gb|ACJ28440.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 440
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 135/252 (53%), Gaps = 44/252 (17%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
PD A + ++ E + + ++ +L L P L+ ++ L ++ PT IQ++ IPA G D+
Sbjct: 4 PDPATQATITTVEKAPQLKSFADLGLIPELLATLDALAYQSPTAIQQSTIPAVIA-GSDV 62
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135
+G A TGSGKT AF LPI+Q L + A++ ++ +LI+ PTREL
Sbjct: 63 LGGAITGSGKTAAFALPIIQLL--------------AKSAKQTRQSNYVSSLILVPTREL 108
Query: 136 ALQVTDHLKEVAKGI--NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193
A QV D A+ I N++V+ + GG+ST Q + L+ +++V TPGRL +LMS
Sbjct: 109 AQQVADSFMRYAQNIKPNLKVLAVYGGVSTNSQMQSLRGGADILVATPGRLLDLMSS--- 165
Query: 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQR 253
+ V+L +S VLDEADRM+ G EL ++++ LP
Sbjct: 166 NAVKLDKVSSLVLDEADRMLSLGFTDELAALLEKLPA----------------------- 202
Query: 254 KKRQTLVFSATI 265
K+QTL+FSAT
Sbjct: 203 -KKQTLLFSATF 213
>gi|403217172|emb|CCK71667.1| hypothetical protein KNAG_0H02520 [Kazachstania naganishii CBS
8797]
Length = 754
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 127/233 (54%), Gaps = 45/233 (19%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
+ +N L L ++K + LG+ +P+PIQ A IP A QGKD+I A TGSGKT AF +PI
Sbjct: 239 ETFNSLSLSRPVLKGLAHLGYTKPSPIQSATIPVAL-QGKDVIAGAVTGSGKTAAFMIPI 297
Query: 94 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153
++RLL + K R +++TPTRELA+Q++D K++ + ++
Sbjct: 298 IERLLFKPSKV-----------------AMTRVIVLTPTRELAIQISDVAKKIGQFVSGL 340
Query: 154 VVPI-VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ VGG++ +QE+ LKARP++V+ TPGR + + V+ ++ VLDEADRM
Sbjct: 341 TFGLAVGGLNLRQQEQALKARPDIVIATPGRFIDHIRNSASFNVD--SVEILVLDEADRM 398
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+E G EL+ I+ MLP KRQ L+FSAT+
Sbjct: 399 LEEGFQDELKEIMTMLP------------------------SKRQNLLFSATM 427
>gi|421871323|ref|ZP_16302945.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus GI-9]
gi|372459950|emb|CCF12494.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus GI-9]
Length = 506
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 126/230 (54%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+NEL L P +++SI +GF+E TPIQ IP A G+D+IG A+TG+GKT+AFG+P+++
Sbjct: 4 FNELGLSPSVLRSISNMGFEEATPIQALTIPVAL-TGRDLIGQAQTGTGKTVAFGIPMIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ H++ +++ PTRELA+QV++ L ++ + ++ +
Sbjct: 63 KI--------------------DTSSNHIQGIVLAPTRELAVQVSEELIKLGQYTGIKTL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++V TPGRL + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDIMRQIRALKKNPHVIVATPGRLIDHIN---RRTIRLQNIQTLVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G E++SI++ +P +RQTL+FSAT+
Sbjct: 160 GFIEEIESILEQIP------------------------DERQTLLFSATM 185
>gi|163789736|ref|ZP_02184173.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
gi|159874958|gb|EDP69025.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
Length = 423
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 127/230 (55%), Gaps = 44/230 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+NEL L+ L+ ++ G+ + TPIQ+ IP + KD++G A+TG+GKT AF LPI+Q
Sbjct: 3 FNELELNQHLLHALKEAGYTKATPIQEDAIPHLLN-NKDLLGCAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++EE K KG ++ALI+ PTRELA+Q+ + + AK + + +
Sbjct: 62 NIMEE----------------KTVGKGAIKALILAPTRELAIQIGESFQTYAKYLPLNIQ 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S Q LK ++++ TPGRL +L+ G V+L+ + FFVLDEAD M++
Sbjct: 106 VIFGGVSQNPQTATLKRGTDILIATPGRLLDLIRQG---FVKLNQVEFFVLDEADMMLDM 162
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G R+++ II LP KKRQ++ FSAT+
Sbjct: 163 GMLRDVRHIIRELP------------------------KKRQSMFFSATM 188
>gi|150863785|ref|XP_001382380.2| pre-mRNA splicing factor RNA helicase of DEAD box family
[Scheffersomyces stipitis CBS 6054]
gi|158514818|sp|A3LNL1.2|PRP28_PICST RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
gi|149385041|gb|ABN64351.2| pre-mRNA splicing factor RNA helicase of DEAD box family
[Scheffersomyces stipitis CBS 6054]
Length = 482
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 138/244 (56%), Gaps = 25/244 (10%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIY-RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGK 85
+I WNE + L+ I +L + EPTPIQ+A IP A +Q +D++G AETGSGK
Sbjct: 49 GDIDNPLRTWNEASIPSKLLSIIVDKLEYLEPTPIQRAAIPLALNQ-RDVVGIAETGSGK 107
Query: 86 TLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY-APKGHLRALIITPTRELALQVTDHLK 144
TLAF +P++ +L + LE + ++ + Y P G LI+ PTRELA Q+T +
Sbjct: 108 TLAFLIPLLSYILNTDKN---YLEYEHQQEQNYNKPLG----LILAPTRELAQQITKEAQ 160
Query: 145 EVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204
+ + + VV I+GG E+ ++ +VV TPGRL + + E++++ L +
Sbjct: 161 KFGDRLGLNVVSIIGGHQYEETVHSIRTGVHVVVATPGRLVDSL---ERNIIGLDKCYYL 217
Query: 205 VLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL--QRKKRQTLVFS 262
++DEADRMI+ G + LQSI+ +P T+ N T+ S+ KKR TL+F+
Sbjct: 218 IMDEADRMIDMGFEKALQSILSYVPSTDRLNS----------TIDSMIFHIKKRITLMFT 267
Query: 263 ATIA 266
ATI+
Sbjct: 268 ATIS 271
>gi|427721123|ref|YP_007069117.1| DEAD/DEAH box helicase [Calothrix sp. PCC 7507]
gi|427353559|gb|AFY36283.1| DEAD/DEAH box helicase domain protein [Calothrix sp. PCC 7507]
Length = 438
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 128/232 (55%), Gaps = 40/232 (17%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L +++++ LG+ +PTPIQK IP G D++ A+TG+GKT +F LP++
Sbjct: 2 SFSNLGLSNEIIRAVTELGYTKPTPIQKQAIPVIL-SGGDLLAGAQTGTGKTASFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
RL + K+ + Y P +RALI+TPTRELA QV ++E K +N+
Sbjct: 61 HRLSNDSVKS---------TSNPYPP---IRALILTPTRELAAQVESSVREYGKYLNLNT 108
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q+RLLK R +++V TPGRL + + G V L + VLDEADRM++
Sbjct: 109 MAMFGGVSINPQKRLLKGRVDILVATPGRLLDHVQQGT---VNLSHVEVLVLDEADRMLD 165
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G R+++ I+ +LP K+RQ L+F AT +
Sbjct: 166 MGFIRDIRRILSLLP------------------------KQRQNLLFFATFS 193
>gi|415909527|ref|ZP_11553150.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
gi|407762572|gb|EKF71396.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
Length = 493
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 129/243 (53%), Gaps = 47/243 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + L P ++K++ G+ PTPIQ IP QG+D++GAA+TG+GKT F LPI+Q
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVL-QGRDVMGAAQTGTGKTAGFSLPIIQ 76
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRV 154
RLL+ + +P H +RALI+TPTRELA QV D++ + +R
Sbjct: 77 RLLQH-------------ASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRS 123
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG+ Q +L+A E+V+ TPGRL + + ++ V L V+DEADRM++
Sbjct: 124 TVVFGGVDMSPQTAILRAGVEIVIATPGRLLDHV---QQKTVNLSQTQILVMDEADRMLD 180
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSA 269
G +LQ II++LP K+RQ L+FSAT + L+A
Sbjct: 181 MGFLPDLQRIINLLP------------------------KQRQNLLFSATFSPEIKKLAA 216
Query: 270 DFR 272
F+
Sbjct: 217 SFQ 219
>gi|357601923|gb|EHJ63191.1| hypothetical protein KGM_14588 [Danaus plexippus]
Length = 829
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 143/238 (60%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +W E H +M+ I ++G+K PTPIQ+ IP Q +DIIG AETGSGKTLA
Sbjct: 396 IPNPIRSWKEANFHEDIMEIISKVGYKSPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLA 454
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ ++ K +M E+A++ P A+I+ PTRELA Q+ + +
Sbjct: 455 FLIPLLT-WIQSLPKNERM-----EDADQ-GPY----AIILAPTRELAQQIEEETNKFGI 503
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ + V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VLDE
Sbjct: 504 PLGITSVVVVGGLSREEQGFKLRLGCEIVIATPGRLIDVLEN--RYLV-LNRCTYVVLDE 560
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATI 265
ADRMI+ G ++Q I++ +P++N + + + + + + +KK RQT++F+AT+
Sbjct: 561 ADRMIDMGFEPDVQKILEYMPVSNIKPDTDAAEDASVLLANYNSKKKFRQTVMFTATM 618
>gi|339007892|ref|ZP_08640466.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|338775095|gb|EGP34624.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
Length = 506
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 126/230 (54%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+NEL L P +++SI +GF+E TPIQ IP A G+D+IG A+TG+GKT+AFG+P+++
Sbjct: 4 FNELGLSPSVLRSISNMGFEEATPIQALTIPVAL-TGRDLIGQAQTGTGKTVAFGIPMIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ H++ +++ PTRELA+QV++ L ++ + ++ +
Sbjct: 63 KI--------------------DTSSNHIQGIVLAPTRELAVQVSEELIKLGQYTGIKTL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++V TPGRL + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDIMRQIRALKKNPHVIVATPGRLIDHIN---RRTIRLQNIQTLVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G E++SI++ +P +RQTL+FSAT+
Sbjct: 160 GFIEEIESILEQIP------------------------DERQTLLFSATM 185
>gi|335356475|ref|ZP_08548345.1| ATP-dependent RNA helicase [Lactobacillus animalis KCTC 3501]
Length = 503
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 126/231 (54%), Gaps = 50/231 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L L+K++ R GF+E TPIQ+A IP GKD+IG A+TG+GKT AFGLPI+
Sbjct: 3 FDELGLSEDLLKAVKRSGFEEATPIQEATIPLVL-AGKDVIGQAQTGTGKTAAFGLPIL- 60
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRV 154
E PK H ++A+II+PTRELA+Q + L + K RV
Sbjct: 61 --------------------EHVDPKEHAIQAIIISPTRELAIQTQEELYRLGKDKRARV 100
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG +Q +LLK P+++VGTPGRL + ++ + V+L + VLDEAD M++
Sbjct: 101 QVVYGGADIRRQIKLLKNPPQILVGTPGRLLDHIN---RKTVDLSKVKMLVLDEADEMLD 157
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II +P GQ RQTL+FSAT+
Sbjct: 158 MGFLDDIEKIISNVP-------GQ-----------------RQTLLFSATM 184
>gi|242022378|ref|XP_002431617.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative
[Pediculus humanus corporis]
gi|212516925|gb|EEB18879.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative
[Pediculus humanus corporis]
Length = 788
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 142/231 (61%), Gaps = 16/231 (6%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E ++ ++ I R+G+ E TPIQ+ IP Q +DIIG AETGSGKTLAF +P++
Sbjct: 362 WKEAKIPQEILDIIERVGYTEATPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLIPLIM 420
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ K +M E+A++ P A+I+ PTRELA Q+ + + + +R V
Sbjct: 421 -WIQSLPKIQRM-----EDADQ-GP----YAIILAPTRELAQQIEEETNKFGNPLGIRTV 469
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VLDEADRMI+
Sbjct: 470 VVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVLDEADRMIDM 526
Query: 216 GHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++Q I++ +P+TN + ++E + + + ++K RQT++F+AT+
Sbjct: 527 GFEPDVQKILEYMPVTNLKPDTEEAEDDKFLLANYNSKKKYRQTVMFTATM 577
>gi|159489242|ref|XP_001702606.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280628|gb|EDP06385.1| predicted protein [Chlamydomonas reinhardtii]
Length = 602
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 131/247 (53%), Gaps = 50/247 (20%)
Query: 23 LVSEAEISTEFDA--WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
SE T+F + + +L + L+K++ LG+K PTPIQ ACIP A G+DI G+A
Sbjct: 136 FYSETPEGTKFSSASFADLNISRPLLKAVEALGYKSPTPIQAACIPLAL-AGRDICGSAV 194
Query: 81 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELALQ 138
TGSGKT AF LP ++RLL + P+G L++TPTRELA+Q
Sbjct: 195 TGSGKTAAFALPFLERLL-------------------HRPRGLAATYVLVLTPTRELAVQ 235
Query: 139 VTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
+ ++++A+ ++ V IVGG+S + Q L+ PE+VV TPGRL + + + V L
Sbjct: 236 IHSMIEKLAQFTDINVALIVGGLSLQVQAITLRQSPEVVVATPGRLIDHLRNSQS--VGL 293
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 258
L+ VLDEADR++E G E+ ++ P +KRQT
Sbjct: 294 EDLAVLVLDEADRLLEMGFREEVAEVVRAAP------------------------RKRQT 329
Query: 259 LVFSATI 265
++FSAT
Sbjct: 330 MLFSATF 336
>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 514
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 130/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L+ ++K+I +GF+EP+ IQ IP QG D+IG AETG+GKTLA+G PI+
Sbjct: 3 FKELNLNEKILKAIDDMGFEEPSKIQSEVIPVLL-QGSDVIGQAETGTGKTLAYGAPIIN 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ + +G + L++TPTRELA+QV D L + K VR++
Sbjct: 62 NI--------------------GSNEGKVFCLVLTPTRELAIQVNDELARIGKYSKVRLL 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG+ ++Q + +K ++++GTPGR+ +L+ ++ ++ L+ + + VLDEAD M++
Sbjct: 102 PVYGGVQIDRQIKAIKRGVDIIIGTPGRVLDLI---KRDILRLNDVKYLVLDEADEMLDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II N +N K+RQT++FSAT+
Sbjct: 159 GFIDDIKEII------NHTN------------------KERQTMMFSATM 184
>gi|409046062|gb|EKM55542.1| hypothetical protein PHACADRAFT_173680 [Phanerochaete carnosa
HHB-10118-sp]
Length = 668
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 127/231 (54%), Gaps = 16/231 (6%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W E + LL+ I R+G+KEP+PIQ+ IP Q +DIIG AETGSGKT AF +P++
Sbjct: 242 SWTESDIPQLLLDVIERIGYKEPSPIQRQAIPIGL-QNRDIIGIAETGSGKTAAFVIPML 300
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ + L +E P +LI+ PTRELA Q+ K+ A +
Sbjct: 301 SFISK--------LPLFTDENRHLGPY----SLILAPTRELAQQIESETKKFAGSLGFTC 348
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V IVGG + E+Q+ L+A E+++ TPGRL +++ E+H++ L + V+DEADRM+
Sbjct: 349 VSIVGGRAVEEQQFNLRAGAEIIIATPGRLKDVI---ERHVIVLSQCRYIVMDEADRMVN 405
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +L I+D LP E Q EQ + + R T +FSAT+
Sbjct: 406 LGFEADLTFILDKLPSDTMEGEDQGEQMDIDGETMIKKGRTRVTTLFSATM 456
>gi|357008100|ref|ZP_09073099.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 529
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 151/282 (53%), Gaps = 55/282 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++E L P ++++I +GF+E TPIQ+ IP A +G+D+IG A+TG+GKT AFG+P++
Sbjct: 4 FSEFGLEPKVLRAITEMGFEESTPIQEKAIPIAM-EGRDLIGQAQTGTGKTAAFGIPLIN 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + E+ + ALI+ PTRELA+QV + ++++ + +R +
Sbjct: 63 KIDIKEER--------------------IVALIMCPTRELAIQVAEEIEKLGRFKGIRSL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG KQ R L+ +P++++GTPGRL + ++ + ++L + +LDEAD M++
Sbjct: 103 PIYGGQDIVKQIRALRKKPQIIIGTPGRLLDHIN---RKTIKLDDVQTVILDEADEMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++QSI+ ++P +RQT++FSAT+ L+
Sbjct: 160 GFMEDIQSILKLVP------------------------DERQTMLFSATMPINIQKLAQQ 195
Query: 271 FRKKLKHGSLKLKQSVNGL--NSIETLSERAGMRANVAIVDL 310
F +H S+ KQ L S L ER A ++D+
Sbjct: 196 FLSNPEHVSVIPKQVSAPLIDQSYIELHERQKFEALCRLIDM 237
>gi|410081467|ref|XP_003958313.1| hypothetical protein KAFR_0G01440 [Kazachstania africana CBS 2517]
gi|372464901|emb|CCF59178.1| hypothetical protein KAFR_0G01440 [Kazachstania africana CBS 2517]
Length = 719
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 157/309 (50%), Gaps = 50/309 (16%)
Query: 32 EFDAWNEL-RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
E W +L + ++ + +LGF +PT IQ IP DI+G A TGSGKTLA+G
Sbjct: 132 ELPEWTKLAKFSMTTLQGLAKLGFTKPTEIQAKTIPLGL-GNHDIMGKASTGSGKTLAYG 190
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA--LIITPTRELALQVTDHLKEVAK 148
+P+++ ++ + K + RA LI TPTRELA QVT HL +V++
Sbjct: 191 IPMLENFVKS-----------------FKSKDNNRAIGLIFTPTRELAQQVTQHLTKVSE 233
Query: 149 GI-----NVRVVPIVGGMSTEKQERLLKARP--ELVVGTPGRLWELMSGGEKHLVELHTL 201
I ++ + GG+S +KQERLLK + ++V+ TPGR EL+ + + +
Sbjct: 234 LILKEKNKYAILSLTGGLSIQKQERLLKYQGSGKIVIATPGRFLELLEKNNELIERFGKI 293
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
VLDEADR++++GHF E + I+ +L G+ +S ++ QT++F
Sbjct: 294 DTLVLDEADRLLQDGHFDEFEKILKLL----GNYRKKSSKSHW------------QTMIF 337
Query: 262 SATIALSADFRKKLKHGSLKLKQSVNGLNSIET----LSERAGMRANVAIVDLTNVSVLA 317
SAT S D KL K +G N +ET L + ++ IVD ++
Sbjct: 338 SAT--FSTDLFNKLASNHNHNKNKNDGENEMETVLKHLMTKIHFKSKPVIVDTNPDEKVS 395
Query: 318 NKLEESFIE 326
++++ES IE
Sbjct: 396 SQIKESLIE 404
>gi|402814785|ref|ZP_10864378.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
gi|402507156|gb|EJW17678.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
Length = 526
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 139/254 (54%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E L P ++++I LGF+E TPIQ+ IP A G+D+IG A+TG+GKT AFG+P++
Sbjct: 4 FAEFGLEPKVLQAITELGFEESTPIQEKAIPVAM-TGRDLIGQAQTGTGKTAAFGIPLIS 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ E+ ++ALI+TPTRELA+QV D + ++ + VR +
Sbjct: 63 KIDPTEER--------------------VKALIMTPTRELAIQVADEIGKLTRFKGVRSL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P++++GTPGRL + ++ + + L ++ VLDEAD M++
Sbjct: 103 PIYGGQDIGRQIRALKKHPQIIIGTPGRLLDHIN---RKTIRLDDVATVVLDEADEMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++ SI+ ++P ++RQT++FSAT+ L+
Sbjct: 160 GFMEDITSILSLVP------------------------EQRQTMLFSATMPPNIQKLANQ 195
Query: 271 FRKKLKHGSLKLKQ 284
F ++ +H S+ K
Sbjct: 196 FLREPEHVSVMPKH 209
>gi|284037338|ref|YP_003387268.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
gi|283816631|gb|ADB38469.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
Length = 485
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 125/230 (54%), Gaps = 41/230 (17%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L ++K++ G+ PTPIQ+ IP + +D++G A+TG+GKT AF +PI+Q
Sbjct: 3 FSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSR-RDLLGCAQTGTGKTAAFAIPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L EER K+ P+ ++ LI+TPTRELA+Q+ + + +N+R
Sbjct: 62 LLSEERSKSTG------------GPR-RIKTLILTPTRELAIQIAESFTAYGRHLNIRNT 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S Q LKA ++++ TPGRL +LM+ G + L + FFVLDEADRM++
Sbjct: 109 VIFGGVSQHSQVNTLKAGVDVLIATPGRLLDLMNQG---FISLRDVQFFVLDEADRMLDM 165
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ +I LP RQ+L FSAT+
Sbjct: 166 GFIHDVKKVITKLPT------------------------HRQSLFFSATM 191
>gi|449665189|ref|XP_004206086.1| PREDICTED: ATP-dependent RNA helicase DDX24-like, partial [Hydra
magnipapillata]
Length = 403
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 115/199 (57%), Gaps = 30/199 (15%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
L ALI+TPTRELA+Q+ +HL +AK ++ +VGG++ KQERLL PE+V+GTPGR
Sbjct: 23 LFALILTPTRELAIQIQNHLNCIAKYTDLSCFAVVGGLAQPKQERLLSKFPEIVIGTPGR 82
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
L++L+ G+ HL + ++ F V+DE DRM+E GHF+EL+ ++
Sbjct: 83 LYKLIKDGDPHLNKFESIKFLVIDECDRMLEFGHFKELEELM------------------ 124
Query: 244 TCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA 303
C+ SS R RQT VFSAT+ L +KH K+ N + ++ L ++ G+
Sbjct: 125 -CIINSSQNR--RQTFVFSATLTLP------VKH---KIYSKKNEVTQMQQLVDKIGLNH 172
Query: 304 NVAIVDLTNVSVLANKLEE 322
++DLT V A+ L +
Sbjct: 173 KAKVIDLTTKQVTASLLRQ 191
>gi|116626579|ref|YP_828735.1| DEAD/DEAH box helicase [Candidatus Solibacter usitatus Ellin6076]
gi|116229741|gb|ABJ88450.1| DEAD/DEAH box helicase domain protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 422
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 124/231 (53%), Gaps = 48/231 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACI-PAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++EL L L ++ + F EPTPIQ I PA A GKDI+ A+TG+GKTLAF LP +
Sbjct: 4 FSELPLSAQLKSNLAKNNFTEPTPIQSLAIEPALA--GKDIVATAQTGTGKTLAFLLPTI 61
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q L E + G +RALI+TPTRELALQ+ + L ++A+G +R
Sbjct: 62 QLLSTEPRQPG------------------VRALILTPTRELALQINEALLQIARGTGIRA 103
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
VGG++ Q R ++ +VV TPGRL++ MS G L+ L T+ +LDE+DRM++
Sbjct: 104 AVAVGGLNERSQLRDIRGGANIVVATPGRLYDFMSRG---LINLTTVRMLILDESDRMLD 160
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++ II +P +RQTL+FSAT+
Sbjct: 161 MGFLPTIKRIIAAMPA------------------------ERQTLLFSATL 187
>gi|395763810|ref|ZP_10444479.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 515
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 126/232 (54%), Gaps = 42/232 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + L P + +++ G+ PTPIQ+ IP QG+D++GAA+TG+GKT F LPI+Q
Sbjct: 39 FADFGLAPEIQRALTDQGYTHPTPIQEQAIPVVL-QGRDVMGAAQTGTGKTAGFSLPIIQ 97
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRV 154
L+ + +P H +RALI+TPTRELA+QV +++K AK +R
Sbjct: 98 LLM-------------AHASSSMSPARHPVRALILTPTRELAVQVAENVKAYAKHTPLRS 144
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GGM + Q LL+ E+V+ TPGRL + + E+ + L + V+DEADRM++
Sbjct: 145 TVVFGGMDMKPQTVLLRGGVEIVIATPGRLLDHI---EQKNISLSQVQMLVMDEADRMLD 201
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +LQ II++LP K+RQ L+FSAT +
Sbjct: 202 MGFLPDLQRIINLLP------------------------KQRQNLMFSATFS 229
>gi|365984639|ref|XP_003669152.1| hypothetical protein NDAI_0C02490 [Naumovozyma dairenensis CBS 421]
gi|343767920|emb|CCD23909.1| hypothetical protein NDAI_0C02490 [Naumovozyma dairenensis CBS 421]
Length = 771
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 125/232 (53%), Gaps = 45/232 (19%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++N L L ++K + LG+ +P+PIQ A IP A GKDII A TGSGKT AF +PI+
Sbjct: 250 SFNTLSLSRPVLKGLANLGYNKPSPIQSATIPIALL-GKDIIAGAVTGSGKTAAFMIPII 308
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+RLL K A R +++TPTRELA+Q+ D K++ K +N
Sbjct: 309 ERLL-----------------FKPAKVSSTRVIVLTPTRELAIQIADVAKKIGKFVNGLT 351
Query: 155 VPI-VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+ VGG++ +QE++LK RP++V+ TPGR + + V+ ++ V+DEADRM+
Sbjct: 352 FGLAVGGLNLRQQEQILKQRPDIVIATPGRFIDHVRNSASFNVD--SVEILVMDEADRML 409
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
E G EL I+ +LP KRQT++FSAT+
Sbjct: 410 EEGFQEELNEIMQLLPT------------------------KRQTMLFSATM 437
>gi|417795517|ref|ZP_12442737.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21305]
gi|334270877|gb|EGL89273.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21305]
Length = 506
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 127/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E + G V+VV
Sbjct: 62 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSCGQGVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 185
>gi|88801632|ref|ZP_01117160.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
gi|88782290|gb|EAR13467.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
Length = 432
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 137/251 (54%), Gaps = 47/251 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L P L+K++ G+ +P+PIQ+ IP +GKDI+ +A+TG+GKT F LP++Q
Sbjct: 3 FKDLGLSPALVKAVEEKGYTKPSPIQEKAIPHIL-EGKDILASAQTGTGKTAGFTLPVLQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L+E + KY P LRAL++TPTRELA QV D+++E +K ++++
Sbjct: 62 YLVETKH-------------PKYRP---LRALVLTPTRELAAQVHDNVREYSKYVDIKST 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG++ + Q L++ +++V TPGRL +L ++ + + +LDEADRM++
Sbjct: 106 VVFGGVNAKPQIATLRSGVDILVATPGRLLDLH---DQKALSFKRVEVLILDEADRMLDM 162
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275
G R++ II +P KRQ L+FSAT S D KKL
Sbjct: 163 GFVRDINKIISFMPA------------------------KRQNLMFSAT--FSNDI-KKL 195
Query: 276 KHGSLKLKQSV 286
G L+ SV
Sbjct: 196 ASGILRDPVSV 206
>gi|422932838|ref|ZP_16965763.1| ATP-dependent RNA helicase DeaD [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
gi|339892024|gb|EGQ80925.1| ATP-dependent RNA helicase DeaD [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
Length = 296
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 116/190 (61%), Gaps = 24/190 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K + + G++ PTPIQ+ IPA KDIIG A+TG+GKT AF LPI+
Sbjct: 10 FRELGLGEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII- 68
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + +++A+++TPTRELALQV + + ++ ++V+
Sbjct: 69 --------------------ETFEHLDYIQAIVLTPTRELALQVAEEMNSLSTSKKMKVI 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S + Q +L+K ++VVGTPGR+ +L+ E+ L++L++L +F+LDEAD M+
Sbjct: 109 PVYGGQSIDIQRKLIKTGVDVVVGTPGRVIDLI---ERKLLKLNSLKYFILDEADEMLNM 165
Query: 216 GHFRELQSII 225
G +++ I+
Sbjct: 166 GFVEDIEKIL 175
>gi|300088260|ref|YP_003758782.1| DEAD/DEAH box helicase [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527993|gb|ADJ26461.1| DEAD/DEAH box helicase domain protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 429
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 124/238 (52%), Gaps = 48/238 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ LHP + + G+ EPTPIQ IP A QG+D+IG A+TG+GKT AF LP++Q
Sbjct: 3 FENFDLHPAVRDGVKSAGYTEPTPIQAQAIPPAL-QGRDLIGLAQTGTGKTTAFVLPMLQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RLL P+G LR LI++PTRELA Q+ D +K +++ +R +
Sbjct: 62 RLLR-------------------GPRGKLRGLIVSPTRELAEQIYDSVKTLSQHTGLRAM 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ E Q+ L+A ++V+ PGRL + + G ++ + V+DEADRM +
Sbjct: 103 AIYGGVGMEPQKAKLRAGTDIVIACPGRLLDHVWQGT---IDFDDVEMLVIDEADRMFDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
G +++ I+ L R +RQTL+FSAT + AD RK
Sbjct: 160 GFLPDIRKIL-----------------------RCLVRPERQTLLFSAT--MPADVRK 192
>gi|389751392|gb|EIM92465.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 812
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 130/248 (52%), Gaps = 42/248 (16%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
S+A S ++ + L ++K++ LGF PTPIQ A IP GKD++G A TG
Sbjct: 203 FASDAPSSDTHSSFLTMNLSRPVLKALTTLGFNTPTPIQAATIPVGLL-GKDVVGNAVTG 261
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142
SGKT AF +P+++RLL +KG++A R LI+ PTRELA+Q +
Sbjct: 262 SGKTAAFIIPMIERLL---------YRDKGKKA------AATRCLILVPTRELAVQCYEV 306
Query: 143 LKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202
K++ +++ IVGG+S + QE L+ARP++V+ TPGRL + + L L
Sbjct: 307 GKKLGTHTDIQFCLIVGGLSLKSQEVALRARPDVVIATPGRLIDHLRNSPSFT--LDALD 364
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262
VLDEADRM+ +G EL II Q+C T RQT++FS
Sbjct: 365 ILVLDEADRMLSDGFADELTEII-----------------QSCPT-------SRQTMLFS 400
Query: 263 ATIALSAD 270
AT+ S D
Sbjct: 401 ATMTDSVD 408
>gi|340375196|ref|XP_003386122.1| PREDICTED: probable ATP-dependent RNA helicase DDX23 [Amphimedon
queenslandica]
Length = 804
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 137/232 (59%), Gaps = 17/232 (7%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+E L + I LG+KEPT IQ+ IP Q +DIIG AETGSGKT AF +P++
Sbjct: 375 WSEGGLPEKITDVIRGLGYKEPTAIQRQAIPIGL-QNRDIIGIAETGSGKTAAFVIPLLV 433
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ K++ E + YA +I+ PTRELA Q+ + + AK ++VR V
Sbjct: 434 WVTS----LPKIVREADVDQGPYA-------IILAPTRELAQQIEEETMKFAKPLDVRTV 482
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L ++ VLDEADRMI+
Sbjct: 483 SLVGGLSREEQGFQLRLGCEIVIATPGRLIDVLEN--RYLV-LSQCTYIVLDEADRMIDM 539
Query: 216 GHFRELQSIIDMLPMTN--GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G E+Q I+ LP++N ++ + T+ V ++S + RQT++F+AT+
Sbjct: 540 GFEPEVQKILAHLPVSNMKPDSDDAEDPTKMLVGINSSHHRYRQTVMFTATM 591
>gi|337752121|ref|YP_004646283.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|336303310|gb|AEI46413.1| DEAD/DEAH box helicase domain protein [Paenibacillus mucilaginosus
KNP414]
Length = 422
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 129/232 (55%), Gaps = 46/232 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L P ++K++ + + +PTPIQ+ IP G+D+ G A+TG+GKT AF LPI+Q
Sbjct: 3 FQQLELIPPIIKALAKENYTQPTPIQEQAIPPVL-AGRDLFGCAQTGTGKTAAFLLPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH--LRALIITPTRELALQVTDHLKEVAKGINVR 153
L ++ + P G +R+LI+TPTRELA+Q++D+ K N+R
Sbjct: 62 LLSTQQGR----------------PNGKRVIRSLILTPTRELAIQISDNAKAYGCFTNLR 105
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
IVGG+S QE+LL+ ++++ TPGRL +LM+ G V+L + VLDEADRM+
Sbjct: 106 YGVIVGGVSQRPQEQLLEQGMDILIATPGRLIDLMNQG---FVDLSHVQILVLDEADRML 162
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G +++ II LP+ KRQTL FSAT+
Sbjct: 163 DMGFIHDMKRIIAKLPV------------------------KRQTLFFSATM 190
>gi|138893877|ref|YP_001124330.1| DEAD/DEAH box helicase [Geobacillus thermodenitrificans NG80-2]
gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
thermodenitrificans NG80-2]
Length = 467
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L +MK+I R+GF+E TPIQ IP + Q KD+IG A+TG+GKT AFG+PI++
Sbjct: 4 FQELGLSKEVMKAIERMGFEETTPIQAKTIPLSL-QNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ G ++AL++ PTRELA+QV++ L ++ VRV+
Sbjct: 63 KV--------------------DVKNGVIQALVVAPTRELAIQVSEELYKIGAVKRVRVL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG E+Q R LK P ++VGTPGR+ + ++ G L + T+ VLDEAD M+
Sbjct: 103 PIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVRTV---VLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P +RQTL+FSAT+
Sbjct: 160 GFIEDIEAILRHVPT------------------------ERQTLLFSATM 185
>gi|50419843|ref|XP_458454.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
gi|74659385|sp|Q6BTL5.1|DRS1_DEBHA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49654120|emb|CAG86536.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
Length = 771
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 135/251 (53%), Gaps = 51/251 (20%)
Query: 18 DAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
D EE ++ ++ T F + L+L ++K + +LG+ +P+PIQ ACIP A GKDI+
Sbjct: 245 DEEEATTAKKQLHTTFQS---LQLSRPVLKGLSQLGYTKPSPIQSACIPIALL-GKDIVA 300
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIITPTREL 135
A TGSGKT A+ +PI++RLL Y P R +++ PTREL
Sbjct: 301 GAVTGSGKTAAYMIPIIERLL-------------------YKPAKISSTRVIVLAPTREL 341
Query: 136 ALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
A+QV D K++ + + N+ VGG++ +QE+ LK RP++V+ TPGRL + +
Sbjct: 342 AIQVCDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKTRPDIVIATPGRLIDHIRNSPSF 401
Query: 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 254
++ +L V+DEADRM++ G EL I+ ++P R
Sbjct: 402 SID--SLEVLVIDEADRMLDEGFQAELTEILSLIP-----------------------RH 436
Query: 255 KRQTLVFSATI 265
KRQTL++SAT+
Sbjct: 437 KRQTLLYSATM 447
>gi|373124645|ref|ZP_09538486.1| hypothetical protein HMPREF0982_03415 [Erysipelotrichaceae
bacterium 21_3]
gi|422328761|ref|ZP_16409787.1| hypothetical protein HMPREF0981_03107 [Erysipelotrichaceae
bacterium 6_1_45]
gi|371659039|gb|EHO24308.1| hypothetical protein HMPREF0981_03107 [Erysipelotrichaceae
bacterium 6_1_45]
gi|371659613|gb|EHO24878.1| hypothetical protein HMPREF0982_03415 [Erysipelotrichaceae
bacterium 21_3]
Length = 437
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 131/238 (55%), Gaps = 49/238 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L + ++K++ G+ +PTPIQ+ IP A QG+DI+G A+TG+GKT AF +P +Q
Sbjct: 3 FQTLHITEPILKAVKEQGYVDPTPIQEQAIPYAL-QGRDILGCAQTGTGKTAAFSIPTIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L K K +R+LI+TPTRELA+Q+ +++ A+ +R
Sbjct: 62 LL-------------------KKHYKQSIRSLIVTPTRELAIQIQENITAYAQYTTIRSA 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ + QER+LKA +++V TPGRL +L+ G ++++ + F+LDEADRM++
Sbjct: 103 VIFGGVPQKPQERILKAGVDILVATPGRLNDLIQQG---IIDISHIEIFILDEADRMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
G +++ II LP K++QTL FSAT + ++ RK
Sbjct: 160 GFLPDVKRIIAKLP------------------------KRKQTLFFSAT--MPSEIRK 191
>gi|407919354|gb|EKG12604.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 791
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 122/238 (51%), Gaps = 48/238 (20%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ + L ++K + +GF EPTPIQ IP A GKD++G A TGSGKT AF +PI+
Sbjct: 276 SFQHMSLSRPILKGLAAVGFSEPTPIQAKTIPVAL-LGKDVVGGAVTGSGKTAAFVIPIL 334
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELALQVTDHLKEVAKGINV 152
+RLL Y PK R I+ PTRELA+Q + K++A ++
Sbjct: 335 ERLL-------------------YRPKKVPTTRVAILMPTRELAVQCFNVSKKLAAFTDI 375
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
IVGG S +QE +LK RP++V+ TPGR + M V+ TL VLDEADRM
Sbjct: 376 TFAQIVGGFSLREQENILKQRPDVVIATPGRFIDHMRNSASFAVD--TLEILVLDEADRM 433
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
+E+G EL I+ +P K RQT++FSAT+ + D
Sbjct: 434 LEDGFADELNEILTTIP------------------------KSRQTMLFSATMTDTVD 467
>gi|212712156|ref|ZP_03320284.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
30120]
gi|422018909|ref|ZP_16365460.1| ATP-dependent RNA helicase with P-loop hydrolase domain
[Providencia alcalifaciens Dmel2]
gi|212685203|gb|EEB44731.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
30120]
gi|414104095|gb|EKT65667.1| ATP-dependent RNA helicase with P-loop hydrolase domain
[Providencia alcalifaciens Dmel2]
Length = 477
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 133/236 (56%), Gaps = 51/236 (21%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++++L L+ ++++I LG++ PTPIQ+ IPA GKD++ +A+TG+GKT F LPI+
Sbjct: 31 SFSDLALNEEILRAINELGYESPTPIQQQAIPAVL-AGKDLLASAQTGTGKTAGFTLPIL 89
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGH----LRALIITPTRELALQVTDHLKEVAKGI 150
Q+L++ P+G+ +RALI+TPTRELA QV +++KE ++ +
Sbjct: 90 QKLVDN-------------------PRGNNRRPIRALILTPTRELAAQVAENVKEYSRHL 130
Query: 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210
+R + GG+S Q L+ ++++ TPGRL +L ++ V+L + FVLDEAD
Sbjct: 131 KIRSFVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLE---HQNAVDLSQVEVFVLDEAD 187
Query: 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
RM++ G +++ +I LP KKRQ L+FSAT +
Sbjct: 188 RMLDMGFIHDIRRVITKLP------------------------KKRQNLLFSATFS 219
>gi|327403899|ref|YP_004344737.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
taffensis DSM 16823]
gi|327319407|gb|AEA43899.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
16823]
Length = 375
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 123/231 (53%), Gaps = 43/231 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L P L+ ++ L + PTPIQ+ IP+ QGKD+ G A+TG+GKT AF LPI+Q
Sbjct: 3 FDELNLLPHLLDALKELEYTTPTPIQEQSIPSLL-QGKDLFGCAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L + + GK +R L++ PTRELA Q+ D K K +R +
Sbjct: 62 HLDPDGQVKGKR---------------PIRCLVLAPTRELANQINDSFKSYGKHSKLRSM 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG++ KQ L A +++V TPGRL +LM+ G ++L ++ FVLDEADRM++
Sbjct: 107 VIFGGVNQNKQVNQLNAGIDILVATPGRLLDLMNQGH---IQLSKITHFVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +++ I+ LP K +Q + FSATI+
Sbjct: 164 GFIHDIKKILPRLP------------------------KNKQNIFFSATIS 190
>gi|449484526|ref|XP_004156907.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
21-like [Cucumis sativus]
Length = 715
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 133/241 (55%), Gaps = 27/241 (11%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
++I +W E +L L+K++ R G+K P+PIQ A IP Q +D+IG AETGSGKT
Sbjct: 288 SKIPRPMRSWTESKLTTELLKAVERAGYKSPSPIQMAAIPLGLQQ-RDVIGIAETGSGKT 346
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF LP++ + L EE E P A+++ PTRELA Q+ D +
Sbjct: 347 AAFVLPMLAYITR--------LPPINEENEAEGPY----AVVMAPTRELAQQIEDETVKF 394
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
+ + ++VV IVGG S E+Q ++ E+V+ TPGRL + + E+ L+ ++ VL
Sbjct: 395 SHYLGIKVVSIVGGQSIEEQGFKIRQGCEVVIATPGRLLDCL---ERRYAVLNQCNYVVL 451
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK--RQTLVFSAT 264
DEADRMI+ G ++ ++D +P +N E + E+ L KK R T +FSAT
Sbjct: 452 DEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEE---------LDEKKXYRTTYMFSAT 502
Query: 265 I 265
+
Sbjct: 503 M 503
>gi|433653854|ref|YP_007297562.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292043|gb|AGB17865.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 514
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 130/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L+ ++K+I +GF+EP+ IQ IP +G D+IG AETG+GKTLA+G PI+
Sbjct: 3 FKELNLNEKILKAIDDMGFEEPSKIQSEVIPVLL-EGSDVIGQAETGTGKTLAYGAPIIN 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ G + LI+TPTRELA+Q+ D L + K VR++
Sbjct: 62 SF--------------------GSNDGKVFCLILTPTRELAIQINDELARIGKYSKVRLL 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG+ ++Q + +K ++VVGTPGR+ +L+ ++++++L ++ + V+DEAD M++
Sbjct: 102 PVYGGVQIDRQIKAIKRGVDIVVGTPGRVLDLI---KRNVLDLKSVKYLVIDEADEMLDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II N +NE +RQT++FSAT+
Sbjct: 159 GFIDDIKEII------NHTNE------------------ERQTMMFSATM 184
>gi|403746506|ref|ZP_10955039.1| DEAD/DEAH box helicase domain-containing protein [Alicyclobacillus
hesperidum URH17-3-68]
gi|403120837|gb|EJY55191.1| DEAD/DEAH box helicase domain-containing protein [Alicyclobacillus
hesperidum URH17-3-68]
Length = 524
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 131/247 (53%), Gaps = 54/247 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E LH ++++I+ +GF+ P+PIQ ACIP +G D+IG A+TG+GKT AFG+P++
Sbjct: 2 FEEFGLHRRVLQAIHDMGFEAPSPIQAACIPIVM-EGVDVIGQAQTGTGKTAAFGIPLV- 59
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E P H++A+++TPTRELA+QV ++++AK VR V
Sbjct: 60 --------------------EMMTPDPHVQAIVLTPTRELAIQVAGEIRKIAKYKRVRSV 99
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG S Q R LK +V+GTPGR+ + + G ++L + VLDEAD M++
Sbjct: 100 PIYGGQSIGHQIRALKQGVHIVIGTPGRVLDHIRRGT---LQLGQVRMVVLDEADEMLDM 156
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++++I+ P ++RQTL+FSAT LS
Sbjct: 157 GFIDDIEAILRETP------------------------EERQTLLFSATFPSEVKRLSGR 192
Query: 271 FRKKLKH 277
+ + +H
Sbjct: 193 YMRDPRH 199
>gi|319902651|ref|YP_004162379.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
36-108]
gi|319417682|gb|ADV44793.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
36-108]
Length = 422
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 147/293 (50%), Gaps = 73/293 (24%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L+L ++K++ G+ PTPIQ+ IP QGKD++G A+TG+GKT AF +PI+Q
Sbjct: 3 FENLKLIEPILKALQEEGYSTPTPIQEKSIPILL-QGKDLLGCAQTGTGKTAAFSIPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L + + G ++ALI+TPTRELA+Q+ + + K ++
Sbjct: 62 KLYKTDNRKG------------------IKALILTPTRELAIQIGESFEAYGKYTGLKHT 103
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ + Q LK ++++ TPGRL +L++ G + L TL FFVLDEADRM++
Sbjct: 104 VIFGGVGQKPQTDDLKRGTQILIATPGRLQDLVNQG---FINLKTLDFFVLDEADRMLDM 160
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275
G +++ I+ MLP +RQTL FSAT+
Sbjct: 161 GFIHDIRRILKMLPT------------------------QRQTLFFSATMP--------- 187
Query: 276 KHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEES--FIE 326
+ IETL+ M +N A V++T VS + + +S F+E
Sbjct: 188 --------------SEIETLAN--SMLSNPAKVEVTPVSSTVDTISQSVYFVE 224
>gi|313900312|ref|ZP_07833806.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
gi|312954861|gb|EFR36535.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
Length = 437
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 131/238 (55%), Gaps = 49/238 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L + ++K++ G+ +PTPIQ+ IP A QG+DI+G A+TG+GKT AF +P +Q
Sbjct: 3 FQTLHITEPILKAVKEQGYVDPTPIQEQAIPYAL-QGRDILGCAQTGTGKTAAFSIPTIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L K K +R+LI+TPTRELA+Q+ +++ A+ +R
Sbjct: 62 LL-------------------KKHYKQSIRSLIVTPTRELAIQIQENITAYAQYTTIRSA 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ + QER+LKA +++V TPGRL +L+ G ++++ + F+LDEADRM++
Sbjct: 103 VIFGGVPQKPQERILKAGVDILVATPGRLNDLIQQG---IIDISHIEIFILDEADRMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
G +++ II LP K++QTL FSAT + ++ RK
Sbjct: 160 GFLPDVKRIIAKLP------------------------KRKQTLFFSAT--MPSEIRK 191
>gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
Length = 532
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 133/242 (54%), Gaps = 52/242 (21%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
++E I+T + +L L ++ ++ +GF+EP+PIQK IP A +G DIIG A+TG+
Sbjct: 1 MTEPTITT----FEDLNLDKKILSALKDMGFEEPSPIQKGAIPLAL-EGDDIIGQAQTGT 55
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKT AFG+PI+Q + E+ H++AL+++PTREL +QV + +
Sbjct: 56 GKTAAFGIPIIQSIDEKNR--------------------HVQALVMSPTRELCIQVAEEI 95
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
++ + V V+P+ GG E+Q R LK ++V+GTPGRL + + G L +H F
Sbjct: 96 SKIGRLKRVHVLPVYGGQPIERQIRSLKHGVQVVIGTPGRLLDHLRRGTISLDHIH---F 152
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
VLDEAD M++ G ++++II +P +RQT++FSA
Sbjct: 153 LVLDEADEMLDMGFIEDIETIIKEVP------------------------PERQTMLFSA 188
Query: 264 TI 265
T+
Sbjct: 189 TM 190
>gi|357040015|ref|ZP_09101805.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum gibsoniae
DSM 7213]
gi|355356995|gb|EHG04774.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum gibsoniae
DSM 7213]
Length = 482
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 130/241 (53%), Gaps = 53/241 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+N+ L ++K++ +GF+E TPIQ+ IP QG+D+IG A TG+GKT AFG+P+M+
Sbjct: 4 FNDFGLTEPVIKALNNMGFEEATPIQERAIPVGL-QGRDLIGQAHTGTGKTAAFGIPLME 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L RE +++ +++TPTRELA+QV + L ++ + +R +
Sbjct: 63 ILQVRRE--------------------YIQGVVLTPTRELAVQVAEELNKLGQYKGIRTL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK RP ++VGTPGRL + M + + L+ +S VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKRPHIIVGTPGRLMDHM---RRKTIRLNQVSMVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI-----ALSAD 270
G ++++I+ +P +RQT++FSAT+ AL+
Sbjct: 160 GFIEDIENILKDIP------------------------AERQTMLFSATMPAPIRALAGR 195
Query: 271 F 271
F
Sbjct: 196 F 196
>gi|346317243|ref|ZP_08858729.1| hypothetical protein HMPREF9022_04386 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345900333|gb|EGX70155.1| hypothetical protein HMPREF9022_04386 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 437
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 131/238 (55%), Gaps = 49/238 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L + ++K++ G+ +PTPIQ+ IP A QG+DI+G A+TG+GKT AF +P +Q
Sbjct: 3 FQTLHITEPILKAVKEQGYVDPTPIQEQAIPYAL-QGRDILGCAQTGTGKTAAFSIPTIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L K K +R+LI+TPTRELA+Q+ +++ A+ +R
Sbjct: 62 LL-------------------KKHYKQSIRSLIVTPTRELAIQIQENITAYAQYTTIRSA 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ + QER+LKA +++V TPGRL +L+ G ++++ + F+LDEADRM++
Sbjct: 103 VIFGGVPQKPQERILKAGVDILVATPGRLNDLIQQG---IIDISHIEIFILDEADRMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
G +++ II LP K++QTL FSAT + ++ RK
Sbjct: 160 GFLPDVKRIIAKLP------------------------KRKQTLFFSAT--MPSEIRK 191
>gi|297744770|emb|CBI38032.3| unnamed protein product [Vitis vinifera]
Length = 797
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 133/241 (55%), Gaps = 27/241 (11%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
++I +W E +L L+K++ R G+K P+PIQ A IP Q +D+IG AETGSGKT
Sbjct: 299 SKIPRPMRSWVESKLSTELLKAVERAGYKTPSPIQMAAIPLGLQQ-RDVIGIAETGSGKT 357
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF LP++ + L EE E P A+++ PTRELA Q+ D +
Sbjct: 358 AAFVLPMLTYI--------SRLPPMSEENEAEGPY----AVVMAPTRELAQQIEDETVKF 405
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
A + ++VV IVGG S E+Q ++ E+V+ TPGRL + + E+ L+ ++ VL
Sbjct: 406 AHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL---ERRYAVLNQCNYVVL 462
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK--RQTLVFSAT 264
DEADRMI+ G ++ ++D +P +N E + E+ L KK R T +FSAT
Sbjct: 463 DEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEE---------LDEKKIYRTTYMFSAT 513
Query: 265 I 265
+
Sbjct: 514 M 514
>gi|423216420|ref|ZP_17202944.1| hypothetical protein HMPREF1074_04476 [Bacteroides xylanisolvens
CL03T12C04]
gi|392690791|gb|EIY84045.1| hypothetical protein HMPREF1074_04476 [Bacteroides xylanisolvens
CL03T12C04]
Length = 374
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 129/230 (56%), Gaps = 43/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++K+I G+ PTPIQ+ IP A + +DI+G A+TG+GKT +F +PI+Q
Sbjct: 3 FKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAK-RDILGCAQTGTGKTASFAIPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L ++E A + ++ALI+TPTRELALQ+++ + + +K +R
Sbjct: 62 HLQLDKEAARRQ---------------GIKALILTPTRELALQISECIDDYSKHTRIRHG 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG++ Q LL+ +++V TPGRL +LMS G H L T+ +FVLDEADRM++
Sbjct: 107 VIFGGVNQRPQVDLLRKGIDILVATPGRLLDLMSQGHIH---LDTIQYFVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ LP K++QTL FSAT+
Sbjct: 164 GFIHDIKRILPKLP------------------------KEKQTLFFSATM 189
>gi|449455778|ref|XP_004145628.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Cucumis
sativus]
Length = 715
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 133/241 (55%), Gaps = 27/241 (11%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
++I +W E +L L+K++ R G+K P+PIQ A IP Q +D+IG AETGSGKT
Sbjct: 288 SKIPRPMRSWTESKLTTELLKAVERAGYKSPSPIQMAAIPLGLQQ-RDVIGIAETGSGKT 346
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF LP++ + L EE E P A+++ PTRELA Q+ D +
Sbjct: 347 AAFVLPMLAYITR--------LPPINEENEAEGPY----AVVMAPTRELAQQIEDETVKF 394
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
+ + ++VV IVGG S E+Q ++ E+V+ TPGRL + + E+ L+ ++ VL
Sbjct: 395 SHYLGIKVVSIVGGQSIEEQGFKIRQGCEVVIATPGRLLDCL---ERRYAVLNQCNYVVL 451
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK--RQTLVFSAT 264
DEADRMI+ G ++ ++D +P +N E + E+ L KK R T +FSAT
Sbjct: 452 DEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEE---------LDEKKIYRTTYMFSAT 502
Query: 265 I 265
+
Sbjct: 503 M 503
>gi|328771766|gb|EGF81805.1| hypothetical protein BATDEDRAFT_16042 [Batrachochytrium
dendrobatidis JAM81]
Length = 584
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 135/243 (55%), Gaps = 17/243 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I W+E L ++ +I R+G+KEPTPIQ+ IP Q +DIIG AETGSGKT +
Sbjct: 156 IPNPLRTWDECELSETILGAISRIGYKEPTPIQRQAIPMGL-QNRDIIGIAETGSGKTAS 214
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ K + E E + +G ALI+ PTRELA Q+ + A+
Sbjct: 215 FVIPML-----------KFITEMPPLTEINSSQGPY-ALILAPTRELAQQIESETSKFAR 262
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ V IVGG + E Q L+ +V+ TPGRL + + E+ ++ L ++ V+DE
Sbjct: 263 EMGFICVSIVGGHAVEGQAFNLRNGAHIVIATPGRLRDCL---EQRILVLSQCTYVVMDE 319
Query: 209 ADRMIENGHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267
ADRM++ G +L+ I+D +P++N + +SE Q ++ RQT++FSAT+ +
Sbjct: 320 ADRMVDMGFEPDLKFILDAMPVSNIKPDSDESENVQLLRELTGKVTPFRQTVMFSATMPV 379
Query: 268 SAD 270
+ +
Sbjct: 380 AVE 382
>gi|167622911|ref|YP_001673205.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167352933|gb|ABZ75546.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 432
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 127/235 (54%), Gaps = 51/235 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ P ++++I G+++ TPIQ+ IPA +G+D++ +A+TG+GKT AF LPI+Q
Sbjct: 3 FESFSFAPEILRAISECGYEKMTPIQQQAIPAV-RRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++L+ G+ + RALI+TPTRELA Q+ D++ + AK ++++VV
Sbjct: 62 KMLDNPSTTGR---------------SNARALILTPTRELAAQIADNINDYAKYLDMKVV 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV----ELHTLSFFVLDEADR 211
++GG+ + Q LK ++++ TPGRL E H+V L + F VLDEADR
Sbjct: 107 TVLGGVKMDSQATKLKRGADIIIATPGRLLE-------HIVACNLSLSNVDFLVLDEADR 159
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
M++ G ++Q I+ + KKRQ L+FSAT +
Sbjct: 160 MLDMGFSADIQKILQAV------------------------NKKRQNLLFSATFS 190
>gi|295085349|emb|CBK66872.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens
XB1A]
Length = 374
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 129/230 (56%), Gaps = 43/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++K+I G+ PTPIQ+ IP A + +DI+G A+TG+GKT +F +PI+Q
Sbjct: 3 FKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAK-RDILGCAQTGTGKTASFAIPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L ++E A + ++ALI+TPTRELALQ+++ + + +K +R
Sbjct: 62 HLQLDKEAARRQ---------------GIKALILTPTRELALQISECIDDYSKHTRIRHG 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG++ Q LL+ +++V TPGRL +LMS G H L T+ +FVLDEADRM++
Sbjct: 107 VIFGGVNQRPQVDLLRKGIDILVATPGRLLDLMSQGHIH---LDTIQYFVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ LP K++QTL FSAT+
Sbjct: 164 GFIHDIKRILPKLP------------------------KEKQTLFFSATM 189
>gi|449551073|gb|EMD42037.1| hypothetical protein CERSUDRAFT_129370 [Ceriporiopsis subvermispora
B]
Length = 794
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 130/248 (52%), Gaps = 42/248 (16%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
S+ S E ++ + L ++KS+ LGF PTPIQ A IP A GKD++G A TG
Sbjct: 197 FASDVAPSEEHSSFLSMNLSRPIIKSLTTLGFNTPTPIQAATIPVALL-GKDVVGNAVTG 255
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142
SGKT AF +P+++RL M ++G++A R L++ PTRELA+Q +
Sbjct: 256 SGKTAAFIIPMLERL---------MYRDRGKKA------AATRCLVLVPTRELAVQCFEV 300
Query: 143 LKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202
++A ++R +VGG+S + QE L+ RP++V+ TPGRL + + +E L
Sbjct: 301 GTKLAAHTDIRSCLVVGGLSLKAQEASLRTRPDVVIATPGRLIDHLRNSPTFTLE--ALD 358
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262
VLDEADRM+E+G EL II P + RQT++FS
Sbjct: 359 ILVLDEADRMLEDGFSDELTEIIKSCPTS------------------------RQTMLFS 394
Query: 263 ATIALSAD 270
AT+ + D
Sbjct: 395 ATMTDTVD 402
>gi|381204134|ref|ZP_09911205.1| ATP-dependent RNA helicase [SAR324 cluster bacterium JCVI-SC
AAA005]
Length = 556
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 43/235 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E+ L +++++ GF EPTPIQ+ IP D+IG A+TG+GKT AFG+P+++
Sbjct: 3 FQEMGLSDAVLRALVESGFSEPTPIQEQVIPLQIRHN-DVIGQAQTGTGKTAAFGIPLIE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL +++ K + ALI+TPTRELA QVTD L+ + ++ +V
Sbjct: 62 RL---------------SPRQRHDSKHTMDALILTPTRELASQVTDELRRIGLYKSLSIV 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S E+Q R L+ ++VGTPGR+ + +S G ++L + FVLDEAD M++
Sbjct: 107 TIYGGVSIEQQIRTLRRGTNIIVGTPGRVLDHLSRGT---IDLSGVRHFVLDEADEMVDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
G ++Q+I+ LP +KRQ L+FSAT++ D
Sbjct: 164 GFIEDIQTIMQSLP------------------------EKRQILLFSATMSPEID 194
>gi|256088376|ref|XP_002580315.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|353230183|emb|CCD76354.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 793
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 141/238 (59%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +W E+ + L I ++G+ EPTPIQ+ IP Q +DIIG AETGSGKT A
Sbjct: 358 IPNPLRSWAEMNVADELKDVIKKVGYPEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAA 416
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ + ++ K+ E+ E+ E+ P A+I+ PTRELA Q+ + + +
Sbjct: 417 FLIPLLNWI----QRLPKL--ERLEDTEQ-GP----YAIIMAPTRELAQQIEEETVKFGR 465
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ ++ V ++GG+S E Q L+ E+V+GTPGRL +++ E + L+ ++ VLDE
Sbjct: 466 PLGIKTVSLIGGLSREDQALKLRMGAEIVIGTPGRLNDVL---ENRYMVLNQCTYIVLDE 522
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQ-SEQTQTCVTVSSLQRKKRQTLVFSATI 265
AD+MI+ G E+ +I+ LP+TN + + +E ++ + + K RQT++F+AT+
Sbjct: 523 ADKMIDMGFEPEVNNILTYLPVTNEKPDNEDAEDDSKLLSNFATKHKYRQTVMFTATM 580
>gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase [Bacillus cytotoxicus NVH 391-98]
gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
391-98]
Length = 511
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 127/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ ++GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP+++
Sbjct: 16 FRELGLSDSLLQSVEKMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLE 74
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ + VR++
Sbjct: 75 KVDTNKE--------------------MVQGIVIAPTRELAIQVGEELYKIGQHKRVRIL 114
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK RP ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 115 PIYGGQDINRQIRALKKRPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 171
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 172 GFIEDIEAILTDVPETH------------------------QTLLFSATM 197
>gi|261749520|ref|YP_003257206.1| ATP-dependent RNA helicase [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497613|gb|ACX84063.1| ATP-dependent RNA helicase [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 542
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 126/228 (55%), Gaps = 50/228 (21%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL-LE 99
L+ +++++ LG K PTPIQK IP GKD+I A+TG+GKT AFGLPI+Q++ LE
Sbjct: 10 LNDKIIQALEDLGIKTPTPIQKKVIPYLLKSGKDLIALAQTGTGKTAAFGLPIIQKINLE 69
Query: 100 EREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN-VRVVPIV 158
R P+ ALI+ PTREL +Q+T L ++ I+ ++++P+
Sbjct: 70 FR-----------------FPQ----ALILCPTRELCIQITRDLSRFSRYISLIKIIPLY 108
Query: 159 GGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 218
GG+S E Q L+ R ++VGTPGR+ +L+ + HL + + + VLDEAD M+ G
Sbjct: 109 GGVSIENQILSLQKRTHIIVGTPGRIIDLIERKKLHLSD---IKYLVLDEADEMLNMGFK 165
Query: 219 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
EL SII LP KKRQ+L+FSAT++
Sbjct: 166 EELDSIIIKLP------------------------KKRQSLLFSATMS 189
>gi|443922203|gb|ELU41680.1| ATP-dependent RNA helicase drs1 [Rhizoctonia solani AG-1 IA]
Length = 1126
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 105/286 (36%), Positives = 145/286 (50%), Gaps = 57/286 (19%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
++A++ T F + N R PLL +++ GF PTPIQ A IP A GKD++G A TGSG
Sbjct: 180 TDAQVHTSFTSMNLSR--PLL-RALTSAGFNSPTPIQAATIPVAL-LGKDVVGGAVTGSG 235
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KT AF +PI++RLL A H R L++ PTRELA+Q +
Sbjct: 236 KTAAFIIPILERLLYRSRDA------------------HTRVLVLVPTRELAVQCHAVAE 277
Query: 145 EVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204
++ +VR IVGG+S + QE L+ RP+LVV TPGRL + + L L
Sbjct: 278 KLGTFTDVRCALIVGGLSLKAQEATLRTRPDLVVATPGRLIDHLRNSRS--FALDALDVL 335
Query: 205 VLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
VLDEADRM+ +G EL+ I+ Q+C T RQT++FSAT
Sbjct: 336 VLDEADRMLSDGFADELKEIV-----------------QSCPT-------GRQTMLFSAT 371
Query: 265 IALSAD--FRKKLKHGSLKL-----KQSVNGLNSIETLSERAGMRA 303
+ + R L+H ++L KQ+ GL E + RAG A
Sbjct: 372 MTDDVETLIRLSLRH-PVRLFVDPSKQTARGLVQ-EFVRVRAGKEA 415
>gi|218132094|ref|ZP_03460898.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
gi|217985744|gb|EEC52085.1| DEAD/DEAH box helicase [Bacteroides eggerthii DSM 20697]
Length = 392
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 129/235 (54%), Gaps = 45/235 (19%)
Query: 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
T F + +L + ++K+I G+ PTPIQ IPA GKDI+G A+TG+GKT AF
Sbjct: 18 TTFMTFKDLNITESILKAIEEKGYVNPTPIQAKAIPALL-VGKDILGCAQTGTGKTAAFA 76
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150
+PI+Q+L +A K L ++ALI+TPTRELALQ+++ + + AK
Sbjct: 77 IPIIQQL-----QADKSLNNS------------IKALILTPTRELALQISECIDDYAKYT 119
Query: 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210
VR I GG++ Q +L +++V TPGRL +LM+ G V L+ + FVLDEAD
Sbjct: 120 QVRHGVIFGGVNQRTQVNMLHKGVDILVATPGRLLDLMNQG---YVRLNNIQHFVLDEAD 176
Query: 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
RM++ G +++ ++ LP K++QTL+FSAT+
Sbjct: 177 RMLDMGFIHDIKRLLPKLP------------------------KEKQTLLFSATM 207
>gi|308484167|ref|XP_003104284.1| hypothetical protein CRE_25008 [Caenorhabditis remanei]
gi|308258253|gb|EFP02206.1| hypothetical protein CRE_25008 [Caenorhabditis remanei]
Length = 572
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 130/254 (51%), Gaps = 51/254 (20%)
Query: 13 SNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
+N P + +SE ++T+ ++EL + +++ + + TP+Q ACIP G
Sbjct: 24 TNAPQPVQ---ISEENMTTK--KFSELGVSSWIIQQLQTMHISTATPVQAACIPKILS-G 77
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132
DI+G A TG+GKTLAF +PI+Q+L + P G + ALI+TPT
Sbjct: 78 SDILGCARTGTGKTLAFAIPILQKLSID-------------------PYG-IYALILTPT 117
Query: 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192
RELA Q+ D V K I ++ IVGG S Q R L RP +VV TPGRL +L++
Sbjct: 118 RELAFQIADQFSAVGKPITLKCSVIVGGRSLIHQARELSDRPHIVVATPGRLADLINSDA 177
Query: 193 KHLVE-LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251
+ + + + FFVLDEADRM+E + +L+ I + +P
Sbjct: 178 EIIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFEAIPA--------------------- 216
Query: 252 QRKKRQTLVFSATI 265
KRQTL+ SATI
Sbjct: 217 ---KRQTLLLSATI 227
>gi|262409233|ref|ZP_06085777.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294645798|ref|ZP_06723482.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a]
gi|294809471|ref|ZP_06768175.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC
1b]
gi|262352980|gb|EEZ02076.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292638877|gb|EFF57211.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a]
gi|294443343|gb|EFG12106.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC
1b]
Length = 374
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 129/230 (56%), Gaps = 43/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++K+I G+ PTPIQ+ IP A + +DI+G A+TG+GKT +F +PI+Q
Sbjct: 3 FKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAK-RDILGCAQTGTGKTASFAIPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L ++E A + ++ALI+TPTRELALQ+++ + + +K +R
Sbjct: 62 HLQLDKEAARRQ---------------GIKALILTPTRELALQISECIDDYSKHTRIRHG 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG++ Q LL+ +++V TPGRL +LMS G H L T+ +FVLDEADRM++
Sbjct: 107 VIFGGVNQRPQVDLLRKGIDILVATPGRLLDLMSQGHIH---LDTIQYFVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ LP K++QTL FSAT+
Sbjct: 164 GFIHDIKRILPKLP------------------------KEKQTLFFSATM 189
>gi|226468232|emb|CAX69793.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Schistosoma japonicum]
Length = 606
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 141/238 (59%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +W E+ + L I ++G+ EPTPIQ+ IP Q +DIIG AETGSGKT A
Sbjct: 171 IPNPLRSWAEMNVADELKDVIKKVGYPEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAA 229
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ + ++ K+ E+ E+ E+ P A+I+ PTRELA Q+ + + +
Sbjct: 230 FLIPLLNWI----QRLPKL--ERLEDTEQ-GPY----AIIMAPTRELAQQIEEETVKFGR 278
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ ++ V ++GG+S E Q L+ E+V+GTPGRL +++ E + L+ ++ VLDE
Sbjct: 279 PLGIKTVSLIGGLSREDQALKLRMGAEIVIGTPGRLNDVL---ENRYMVLNQCTYIVLDE 335
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQ-SEQTQTCVTVSSLQRKKRQTLVFSATI 265
AD+MI+ G E+ +I+ LP+TN + + +E ++ + + K RQT++F+AT+
Sbjct: 336 ADKMIDMGFEPEVNNILTYLPVTNEKPDNEDAEDDSKLLSNFATKHKYRQTVMFTATM 393
>gi|259047319|ref|ZP_05737720.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
gi|259036015|gb|EEW37270.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
Length = 520
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 137/261 (52%), Gaps = 54/261 (20%)
Query: 27 AEISTEFD-AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGK 85
E+S E + +NEL L L++SI ++GF+E TPIQ IP A QG D+IG A+TG+GK
Sbjct: 4 TEVSKEENMKFNELGLDSALLESIEKMGFEEATPIQAQTIPKAL-QGLDVIGQAQTGTGK 62
Query: 86 TLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 145
T AFGLP++Q++ + K G ++ L+I PTRELA+Q + L
Sbjct: 63 TAAFGLPMLQKI--DPSKKG------------------VQGLVIAPTRELAIQTQEELFR 102
Query: 146 VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
+ + +RV + GG +Q R LK P++VVGTPGRL + +S + ++L + V
Sbjct: 103 LGRDKKIRVQAVYGGADINRQIRQLKENPQIVVGTPGRLLDHIS---RRTLKLGAVETLV 159
Query: 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
LDEAD M+ G +++SII +P + RQTL+FSAT+
Sbjct: 160 LDEADEMLNMGFLEDIESIIKQVP------------------------ENRQTLLFSATM 195
Query: 266 A-----LSADFRKKLKHGSLK 281
+ F K +H +K
Sbjct: 196 PDDIKRIGVQFMKDPEHVRIK 216
>gi|149245944|ref|XP_001527442.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013518|sp|A5DY34.1|DRS1_LODEL RecName: Full=ATP-dependent RNA helicase DRS1
gi|146449836|gb|EDK44092.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 686
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 130/231 (56%), Gaps = 45/231 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL+L ++KS+ +LGF PTP+Q + IP A GKDI+ +A+TGSGKT A+ +PI++
Sbjct: 198 FQELQLSRPILKSLQQLGFTVPTPVQASTIPIALL-GKDIVASAQTGSGKTAAYLIPIIE 256
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRV 154
RLL + +A+I+TPTRELA+QV D +++ + + N+
Sbjct: 257 RLLYVKNSTS------------------TKAIILTPTRELAIQVHDVGRKLGQFVSNLNF 298
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
VGG+S ++QE+ LK RP++V+ TPGRL + + VE + ++DEADRM+E
Sbjct: 299 GMAVGGLSLKQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSVE--DVQVLIIDEADRMLE 356
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G EL I+ ++P ++KRQTL+FSAT+
Sbjct: 357 EGFQEELTEILSLIP-----------------------KQKRQTLLFSATM 384
>gi|410458653|ref|ZP_11312411.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
gi|409931248|gb|EKN68234.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
Length = 501
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL + +MKSI +GF+E TPIQ IP + QGKD+IG A+TG+GKT AFG+P+++
Sbjct: 4 FHELGISEKIMKSIQAMGFEEATPIQSETIPVSL-QGKDVIGQAQTGTGKTAAFGIPMIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ ++ +++ PTRELA+QV + L + + V+ +
Sbjct: 63 KI--------------------DIKNTFIQGIVVAPTRELAIQVAEELNRIGQFKGVKAL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK RP+++VGTPGRL + M+ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKNRPQIIVGTPGRLMDHMN---RKTIRLQNIQVVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P + RQTL+FSAT+
Sbjct: 160 GFIEDIEAILKEVP------------------------EVRQTLLFSATM 185
>gi|358347102|ref|XP_003637601.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355503536|gb|AES84739.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 781
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 133/239 (55%), Gaps = 23/239 (9%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
++I +W E +L L+K++ + G+K P+PIQ A IP Q +D+IG AETGSGKT
Sbjct: 279 SKIPRPMRSWVESKLSQELLKAVEKAGYKTPSPIQMAAIPLGLQQ-RDVIGVAETGSGKT 337
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF LP++ + L EE E P A+++ PTRELA Q+ D +
Sbjct: 338 AAFVLPMLSYITR--------LPPISEENEAEGPY----AVVMAPTRELAQQIEDETVKF 385
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
A+ + ++VV IVGG S E+Q ++ E+V+ TPGRL + + E+ L+ ++ VL
Sbjct: 386 AQYMGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCL---ERRYAVLNQCNYVVL 442
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
DEADRMI+ G ++ ++D +P +N E + E+ +R R T +FSAT+
Sbjct: 443 DEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDE-------KRIYRTTYMFSATM 494
>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 510
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 131/244 (53%), Gaps = 42/244 (17%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
+S+ ++ + +++ L P ++K+I G+ PTPIQ IP G+D++GAA+TG+
Sbjct: 23 MSDTAVTPSTETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVL-AGRDVMGAAQTGT 81
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDH 142
GKT +F LPI+QRLL + + +P H +RALI+TPTRELA QV +
Sbjct: 82 GKTASFSLPIIQRLLPQASTSA-------------SPARHPVRALILTPTRELADQVAAN 128
Query: 143 LKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202
++ AK +R + GG+ Q L+ E+++ TPGRL + + ++ L +
Sbjct: 129 VQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEILIATPGRLLDHV---QQKTANLGQVQ 185
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262
VLDEADRM++ G +LQ I+++LP K+RQTL+FS
Sbjct: 186 MLVLDEADRMLDMGFLPDLQRILNLLP------------------------KERQTLLFS 221
Query: 263 ATIA 266
AT +
Sbjct: 222 ATFS 225
>gi|339444851|ref|YP_004710855.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
gi|338904603|dbj|BAK44454.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
Length = 418
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 126/230 (54%), Gaps = 43/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L + ++ RLGF EPTP+Q+ IP G+D++ AA+TG+GKT AF LP+++
Sbjct: 5 FEDLGLSEATLSTVARLGFTEPTPVQQQAIPLVL-AGRDVVAAAKTGTGKTAAFALPLIE 63
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL G+EA++ G R L++TPTRELA Q+ ++ +G VRV+
Sbjct: 64 RL-------------AGDEAKRR--PGSPRVLVVTPTRELAQQIDAACSDMTRGSRVRVL 108
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+VGGM + Q L ++++ TPGRL++LM G+ L + TL VLDEADRM++
Sbjct: 109 SVVGGMPYKGQIARLNKGIDILIATPGRLFDLMQRGDVKLDRVETL---VLDEADRMLDM 165
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G + ++ I+ P + RQTL+FSATI
Sbjct: 166 GFWPTMKKIVAATPAS------------------------RQTLLFSATI 191
>gi|404497424|ref|YP_006721530.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|418066827|ref|ZP_12704184.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
gi|78195025|gb|ABB32792.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|373559816|gb|EHP86098.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
Length = 451
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 120/232 (51%), Gaps = 47/232 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E LHP +M + G+ PTPIQ IP +G+D++G A+TG+GKT AF LPI+
Sbjct: 3 FKEFNLHPQVMAGVTAAGYTTPTPIQAQAIPTVM-EGRDVMGLAQTGTGKTAAFALPILH 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL + GE +G +RAL+I PTRELA Q+ D + + +R V
Sbjct: 62 RLAQ------------GE-------RGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSV 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG++ Q + LKA E+VV PGRL + M+ G ++L L VLDEAD+M +
Sbjct: 103 TVYGGVNVNPQIQKLKAGAEIVVACPGRLLDHMAQG---TIDLSHLEVLVLDEADQMFDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267
G +L+ I+ LP KRQTL+FSAT+ +
Sbjct: 160 GFLPDLRRILKQLP------------------------PKRQTLLFSATMPI 187
>gi|354605411|ref|ZP_09023399.1| hypothetical protein HMPREF9450_02314 [Alistipes indistinctus YIT
12060]
gi|353346953|gb|EHB91231.1| hypothetical protein HMPREF9450_02314 [Alistipes indistinctus YIT
12060]
Length = 400
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 130/243 (53%), Gaps = 43/243 (17%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+NEL + +++++ G+ EPTPIQ+ IP +GKDI G A+TG+GKT AF +PI+Q
Sbjct: 3 FNELNIAEPILRAVCEKGYNEPTPIQEQAIPVVL-RGKDIFGIAQTGTGKTAAFAIPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAE-----------KYAPKGH--LRALIITPTRELALQVTDH 142
LL++ E+ + E E + K + +RALI+TPTRELALQ+ D
Sbjct: 62 HLLKKNEQ--NIAAEPASTNEPGRARRNRRGRSHGKKEYRAIRALILTPTRELALQINDC 119
Query: 143 LKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202
+ K +R I GG+ Q L+ ++++ TPGRL +L+ E V L +L+
Sbjct: 120 FTDYGKYTGLRHTAIFGGVKQHPQTEKLRQGVDILIATPGRLLDLIGQDE---VRLESLT 176
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262
FVLDEADRM++ G +++ ++ MLP +RQTL FS
Sbjct: 177 HFVLDEADRMLDMGFIADIRRLLPMLP------------------------AERQTLFFS 212
Query: 263 ATI 265
AT+
Sbjct: 213 ATM 215
>gi|452990332|emb|CCQ98554.1| putative ATP-dependent RNA helicase [Clostridium ultunense Esp]
Length = 535
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 143/259 (55%), Gaps = 52/259 (20%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
+++ ++ E ++ ++K+I +GF+EP+PIQ ACIP +G D+IG A+TG+GKT
Sbjct: 7 KVTNSMSSFQEFKIDQAILKAIQEMGFEEPSPIQSACIPKIL-EGFDVIGQAQTGTGKTA 65
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
AFG+PI++++ E ++AL++TPTRELA+Q++ L++++
Sbjct: 66 AFGIPIVEKVTSSPE---------------------VQALVLTPTRELAIQISGELRKIS 104
Query: 148 KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 207
K ++ +PI GG S Q R LK ++V+GTPGR+ + ++ + ++L + VLD
Sbjct: 105 KFKRIKTLPIYGGQSIGHQIRALKQGVQVVIGTPGRIIDHLN---RKTLKLDHVRIVVLD 161
Query: 208 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267
EAD M++ G +++SI+ +P RQTL+FSAT +
Sbjct: 162 EADEMLDMGFIDDIESILRSVP------------------------ADRQTLLFSAT--M 195
Query: 268 SADFRKKLKHGSLKLKQSV 286
A+ R L + +K Q+V
Sbjct: 196 PAEIR-SLANRYMKDPQTV 213
>gi|341902886|gb|EGT58821.1| hypothetical protein CAEBREN_15104 [Caenorhabditis brenneri]
Length = 554
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 126/243 (51%), Gaps = 48/243 (19%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
+SE ++T+ + +L + + + + + K TP+Q ACIP G DI+G A TG+
Sbjct: 74 ISEENMTTK--KFQQLGVASWITQQLQTMHIKTATPVQAACIPKILD-GSDILGCARTGT 130
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKTLAF +PI+Q+L P G + ALI+TPTRELA Q+ D
Sbjct: 131 GKTLAFAIPILQKL-------------------SVDPYG-IFALILTPTRELAFQIADQF 170
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH-TLS 202
V K I ++ IVGG S +Q R L RP +VV TPGRL +L+ + + ++ +
Sbjct: 171 VAVGKPITLKCSVIVGGRSLIQQARELSERPHIVVATPGRLADLIESDQDVIAKVFKKIQ 230
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262
FFVLDEADRM+E + +L+ I + +P +KRQTL+ S
Sbjct: 231 FFVLDEADRMLEGQYNDQLKPIFESIP------------------------QKRQTLLLS 266
Query: 263 ATI 265
ATI
Sbjct: 267 ATI 269
>gi|403415272|emb|CCM01972.1| predicted protein [Fibroporia radiculosa]
Length = 782
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 126/239 (52%), Gaps = 42/239 (17%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E ++ + L ++KSI LGF +PTPIQ A IP A GKDI+G A TGSGKT AF +
Sbjct: 191 EHTSFLSMNLSRPIIKSITALGFNKPTPIQAATIPVALL-GKDIVGNAVTGSGKTAAFII 249
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
P+++RLL ++G++A R L++ PTREL +Q + ++A +
Sbjct: 250 PMLERLL---------YRDRGKKA------AATRCLVLVPTRELGVQCFEVGTKLAAHTD 294
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+R +VGG+S + QE L+ RP++V+ TPGRL + + L L VLDEADR
Sbjct: 295 IRFSLVVGGLSVKTQEATLRTRPDVVIATPGRLIDHLRNSPAFT--LDALDILVLDEADR 352
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
M+ +G EL II PM+ RQT++FSAT+ S D
Sbjct: 353 MLSDGFADELTEIIKSCPMS------------------------RQTMLFSATMTDSVD 387
>gi|256088378|ref|XP_002580316.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|353230182|emb|CCD76353.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 730
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 141/238 (59%), Gaps = 16/238 (6%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +W E+ + L I ++G+ EPTPIQ+ IP Q +DIIG AETGSGKT A
Sbjct: 295 IPNPLRSWAEMNVADELKDVIKKVGYPEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAA 353
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F +P++ + ++ K+ E+ E+ E+ P A+I+ PTRELA Q+ + + +
Sbjct: 354 FLIPLLNWI----QRLPKL--ERLEDTEQ-GP----YAIIMAPTRELAQQIEEETVKFGR 402
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ ++ V ++GG+S E Q L+ E+V+GTPGRL +++ E + L+ ++ VLDE
Sbjct: 403 PLGIKTVSLIGGLSREDQALKLRMGAEIVIGTPGRLNDVL---ENRYMVLNQCTYIVLDE 459
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQ-SEQTQTCVTVSSLQRKKRQTLVFSATI 265
AD+MI+ G E+ +I+ LP+TN + + +E ++ + + K RQT++F+AT+
Sbjct: 460 ADKMIDMGFEPEVNNILTYLPVTNEKPDNEDAEDDSKLLSNFATKHKYRQTVMFTATM 517
>gi|341882300|gb|EGT38235.1| hypothetical protein CAEBREN_08382 [Caenorhabditis brenneri]
Length = 554
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 127/243 (52%), Gaps = 48/243 (19%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
+SE ++T+ + +L + + + + + K TP+Q ACIP G DI+G A TG+
Sbjct: 72 ISEENMTTK--KFQQLGVASWITQQLQTMHIKTATPVQAACIPKILD-GSDILGCARTGT 128
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKTLAF +PI+Q+L + P G + ALI+TPTRELA Q+ D
Sbjct: 129 GKTLAFAIPILQKLSVD-------------------PYG-IFALILTPTRELAFQIADQF 168
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH-TLS 202
V K I ++ IVGG S +Q R L RP +VV TPGRL +L+ + + ++ +
Sbjct: 169 VAVGKPITLKCSVIVGGRSLIQQARELSERPHIVVATPGRLADLIESDQDVIAKVFKKIQ 228
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262
FFVLDEADRM+E + +L+ I + +P +KRQTL+ S
Sbjct: 229 FFVLDEADRMLEGQYNDQLKPIFESIP------------------------QKRQTLLLS 264
Query: 263 ATI 265
ATI
Sbjct: 265 ATI 267
>gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
Length = 498
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 136/263 (51%), Gaps = 48/263 (18%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+ A S FD++ LHP +++++ G+ +PTPIQ A IP G D++GAA+TG+G
Sbjct: 12 APANESVTFDSFG---LHPDVLRALTESGYTKPTPIQAAAIPVVT-AGHDVMGAAQTGTG 67
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHL 143
KT F LPI+ LL + + +P H +RALI+TPTRELA QV D++
Sbjct: 68 KTAGFSLPIIHNLLPDANTSA-------------SPARHPVRALILTPTRELADQVYDNV 114
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
+ AK +R + GG+ Q L+ E++V TPGRL + + ++ V L +
Sbjct: 115 AKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV---QQRSVNLSQVRM 171
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
VLDEADRM++ G +LQ II++LP RQTL+FSA
Sbjct: 172 LVLDEADRMLDMGFLPDLQRIINLLP------------------------AHRQTLLFSA 207
Query: 264 TIALSADFRKKLKHGSLKLKQSV 286
T + K+L L+ Q++
Sbjct: 208 TFSPEI---KRLAASYLRHPQTI 227
>gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase [Enterobacter cloacae SCF1]
gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
Length = 446
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 134/232 (57%), Gaps = 42/232 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L+P +++++ G++EPTPIQK IPA +G+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDTLGLNPEILRAVAEQGYREPTPIQKQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
QRL++ A KG +RALI+TPTRELA QV ++++E +K +N+R
Sbjct: 61 QRLVQNEPHA------KGRRP--------IRALILTPTRELAAQVGENVREYSKYLNIRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q L+ +++V TPGRL +L ++ ++L ++ VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDILVATPGRLLDLE---HQNALKLDSVEVLVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +++ ++ LP KRQ L+FSAT +
Sbjct: 164 MGFIHDIRRVLAKLPA------------------------KRQNLLFSATFS 191
>gi|114046738|ref|YP_737288.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113888180|gb|ABI42231.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 409
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 129/231 (55%), Gaps = 42/231 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L LH L+ ++ LG+ +PTPIQ IPA + +D++ A+TG+GKT AF LPI+
Sbjct: 2 SFSALSLHSQLVNTLAELGYLQPTPIQVEAIPAILAK-QDVMAGAQTGTGKTAAFALPIL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q+LL + E + APK +RAL++ PTRELA+QV + AKG ++RV
Sbjct: 61 QQLLLDNE-------------SQDAPK-DIRALVLVPTRELAVQVQQSFVKYAKGTDIRV 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
GG+S E Q+ KA ++++ TPGRL + + G ++ L LS V DEADRM++
Sbjct: 107 GIAYGGVSIEAQQAEFKAGVDVLIATPGRLLDHLRQG---VLNLKYLSVLVFDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G E+++++ +P +RQTL+FSAT+
Sbjct: 164 MGFMDEIKAVLKQVPA------------------------QRQTLLFSATL 190
>gi|373108568|ref|ZP_09522850.1| hypothetical protein HMPREF9712_00443 [Myroides odoratimimus CCUG
10230]
gi|423129762|ref|ZP_17117437.1| hypothetical protein HMPREF9714_00837 [Myroides odoratimimus CCUG
12901]
gi|371646685|gb|EHO12196.1| hypothetical protein HMPREF9712_00443 [Myroides odoratimimus CCUG
10230]
gi|371647785|gb|EHO13280.1| hypothetical protein HMPREF9714_00837 [Myroides odoratimimus CCUG
12901]
Length = 415
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 133/232 (57%), Gaps = 43/232 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L+L+ ++++I LG+KEPTPIQ+ IP + KD+IG A+TG+GKT AF +PI+
Sbjct: 3 FEDLQLNKNILRAIDELGYKEPTPIQQKAIPFILAE-KDLIGCAQTGTGKTAAFAMPIIH 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L K G +K ++A + LI+TPTRELA+Q+ D+ ++ AK NV +
Sbjct: 62 YL----HKLGNT--KKAKKA---------KVLIVTPTRELAVQIGDNFEKYAKYTNVTYI 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGMS + Q L ++++GTPGRL +L +KHL +L L F VLDEAD M++
Sbjct: 107 TLYGGMSIKPQIEQLNKGADVIIGTPGRLLDLYK--QKHL-DLDHLHFLVLDEADLMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267
G +++ +I + P SN RQTL+FSAT+ L
Sbjct: 164 GFIDDVKKLIQLTP----SN--------------------RQTLLFSATMPL 191
>gi|423133418|ref|ZP_17121065.1| hypothetical protein HMPREF9715_00840 [Myroides odoratimimus CIP
101113]
gi|423329024|ref|ZP_17306831.1| hypothetical protein HMPREF9711_02405 [Myroides odoratimimus CCUG
3837]
gi|371648682|gb|EHO14169.1| hypothetical protein HMPREF9715_00840 [Myroides odoratimimus CIP
101113]
gi|404603424|gb|EKB03078.1| hypothetical protein HMPREF9711_02405 [Myroides odoratimimus CCUG
3837]
Length = 415
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 133/232 (57%), Gaps = 43/232 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L+L+ ++++I LG+KEPTPIQ+ IP + KD+IG A+TG+GKT AF +PI+
Sbjct: 3 FEDLQLNKNILRAIDELGYKEPTPIQQKAIPFILAE-KDLIGCAQTGTGKTAAFAMPIIH 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L K G +K ++A + LI+TPTRELA+Q+ D+ ++ AK NV +
Sbjct: 62 YL----HKLGNT--KKAKKA---------KVLIVTPTRELAVQIGDNFEKYAKYTNVTYI 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGMS + Q L ++++GTPGRL +L +KHL +L L F VLDEAD M++
Sbjct: 107 TLYGGMSIKPQIEQLNKGADVIIGTPGRLLDLYK--QKHL-DLDHLHFLVLDEADLMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267
G +++ +I + P SN RQTL+FSAT+ L
Sbjct: 164 GFIDDVKKLIQLTP----SN--------------------RQTLLFSATMPL 191
>gi|418595150|ref|ZP_13158775.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21342]
gi|374402283|gb|EHQ73315.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21342]
Length = 506
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++G V+V
Sbjct: 62 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVG 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 185
>gi|312077794|ref|XP_003141459.1| RNA helicase [Loa loa]
Length = 674
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 135/232 (58%), Gaps = 16/232 (6%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+E L + I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKT AF +P++
Sbjct: 302 WDEAGLPSEVFDVIMKIGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAAFLIPLLV 360
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ + + G + + P A+I+ PTRELA Q+ + + + + +R V
Sbjct: 361 WITS-------IPKFHGNDEQDTGPY----AIIMAPTRELAQQIEEETVKFGQLLGIRTV 409
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
++GG S E+Q L+ E+V+ TPGRL +++ E + L ++ +LDEADRM++
Sbjct: 410 SVIGGASREEQGLKLRLGVEVVIATPGRLLDVL---ENRYLSLDQCTYVILDEADRMLDM 466
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATIA 266
G E+Q +++ +P+TN + + + + + + +KK RQT++F+AT++
Sbjct: 467 GFEPEVQKVLEYIPVTNLKPDTEDAEKEESIMENFFSKKKYRQTVMFTATMS 518
>gi|117919611|ref|YP_868803.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117611943|gb|ABK47397.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 409
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 129/231 (55%), Gaps = 42/231 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L LH L+ ++ LG+++PTPIQ IPA + +D++ A+TG+GKT AF LPI+
Sbjct: 2 SFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILAK-QDVMAGAQTGTGKTAAFALPIL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q+LL + E + APK +RAL++ PTRELA+QV + AKG ++RV
Sbjct: 61 QQLLIDNE-------------SQDAPK-DVRALVLVPTRELAVQVQQSFVKYAKGTDIRV 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
GG+S E Q+ KA ++++ TPGRL + + G + L LS V DEADRM++
Sbjct: 107 GIAYGGVSIEAQQAEFKAGIDVLIATPGRLLDHLRQGA---LNLKRLSVLVFDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G E+++++ +P +RQTL+FSAT+
Sbjct: 164 MGFMDEIKAVLKQVPA------------------------QRQTLLFSATL 190
>gi|110680325|ref|YP_683332.1| ATP-dependent RNA helicase [Roseobacter denitrificans OCh 114]
gi|109456441|gb|ABG32646.1| putative ATP-dependent RNA helicase, putative [Roseobacter
denitrificans OCh 114]
Length = 433
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 131/235 (55%), Gaps = 46/235 (19%)
Query: 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
++F+ N L P L+ + R+G K+PTPIQK IP A + G+D++G A+TG+GKT AFG
Sbjct: 2 SDFEMMN---LPPELVARLGRMGLKDPTPIQKQAIPHAMN-GRDVMGLAQTGTGKTAAFG 57
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150
+P++ +MLE G A K +R L++ PTRELA Q++ +L+ A+
Sbjct: 58 VPLV----------AQMLELDGRPAPK-----SVRGLVLAPTRELATQISVNLRSFAENT 102
Query: 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210
V+V +VGG S Q + L+ +L+V TPGRL +LM ++ V L F VLDEAD
Sbjct: 103 KVKVAMVVGGQSINNQIKRLERGVDLLVATPGRLLDLM---DRRAVRLDEAVFLVLDEAD 159
Query: 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+M++ G +L+ I ++P K+RQT++FSAT+
Sbjct: 160 QMLDMGFIHDLRKIASVIP------------------------KERQTMLFSATM 190
>gi|402221947|gb|EJU02015.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 809
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 126/245 (51%), Gaps = 42/245 (17%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGK 85
+A ST + + L L+K++ LGF++PTPIQ A IP A GKD++G A TGSGK
Sbjct: 211 DAATSTSDVTFQSMNLSRPLLKALANLGFEKPTPIQAAAIPVALL-GKDVVGGAVTGSGK 269
Query: 86 TLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 145
T AF +PI++RLL ++G+ A R +I+ PTRELA+Q
Sbjct: 270 TAAFVIPILERLL---------FRDRGKAA------ATTRVVILCPTRELAVQCHAVATR 314
Query: 146 VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
+ +VR +VGG+S + QE L+ RP++V+ TPGRL + + L L +
Sbjct: 315 IGSFTDVRFSLVVGGLSLKGQEAELRTRPDVVIATPGRLIDHLRNSPS--FSLDMLDVLI 372
Query: 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+DEADRM+E G EL II P K+RQT++FSAT+
Sbjct: 373 MDEADRMLEEGFAAELGEIISACP------------------------KQRQTMLFSATM 408
Query: 266 ALSAD 270
S D
Sbjct: 409 TDSVD 413
>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 536
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 139/250 (55%), Gaps = 53/250 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + L P ++++I LGF+E TPIQ IP A G+D+IG A+TG+GKT AFGLP++
Sbjct: 4 FADFGLEPRVLQAITELGFEEATPIQSQSIPIAL-TGRDMIGQAQTGTGKTAAFGLPLIH 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E E+ + +LI+TPTRELA+QV + + ++++ +R +
Sbjct: 63 KIAKEEER--------------------IVSLIMTPTRELAIQVAEEIGKLSRFKGIRSL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG +Q R LK +P++++GTPGRL + ++ + + L + VLDEAD M++
Sbjct: 103 AIYGGQDIGRQIRALKKKPQIIIGTPGRLLDHIN---RKTIRLDDVQTVVLDEADEMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++QSI+ ++P ++RQTL+FSAT+ L++
Sbjct: 160 GFMEDIQSILKLVP------------------------EERQTLLFSATMPANIQKLASQ 195
Query: 271 FRKKLKHGSL 280
F K +H S+
Sbjct: 196 FLKDPEHVSV 205
>gi|295696219|ref|YP_003589457.1| DEAD/DEAH box helicase [Kyrpidia tusciae DSM 2912]
gi|295411821|gb|ADG06313.1| DEAD/DEAH box helicase domain protein [Kyrpidia tusciae DSM 2912]
Length = 526
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 154/287 (53%), Gaps = 56/287 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + +L + ++I +GF+EP+PIQ ACIP QGKD+IG A+TG+GKT AFG+PI++
Sbjct: 4 FTDFQLSRRVQQAIDDMGFEEPSPIQAACIPLVL-QGKDVIGQAQTGTGKTAAFGVPIIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ R H++ALI+TPTRELA+QV L+++AK VR +
Sbjct: 63 MMGTGR---------------------HVQALILTPTRELAIQVAGELRKIAKYARVRTL 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG S Q R L+ +V+GTPGR+ + + G L ++ T+ VLDEAD M++
Sbjct: 102 PIYGGQSIGHQIRALQQGVGVVIGTPGRVLDHLRRGTLKLDKVRTV---VLDEADEMLDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++++I+ P ++RQTL+FSAT L+
Sbjct: 159 GFIEDIEAILKETP------------------------QERQTLLFSATFPHEVKQLAVR 194
Query: 271 FRKKLKHGSL-KLKQSVNGLNSIET-LSERAGMRANVAIVDLTNVSV 315
+ K +H ++ + + +V ++ I + ER + + I+D +VS+
Sbjct: 195 YMKNPEHVTVNRGEMTVPLIDQIYYKVLERNKLESLCRIIDSEDVSL 241
>gi|430749671|ref|YP_007212579.1| DNA/RNA helicase [Thermobacillus composti KWC4]
gi|430733636|gb|AGA57581.1| DNA/RNA helicase, superfamily II [Thermobacillus composti KWC4]
Length = 517
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 136/250 (54%), Gaps = 53/250 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E L P +++++ +GF+E TPIQ IP A G D+IG A+TG+GKT AFG+P++
Sbjct: 4 FAEFGLEPKVLQAVTEMGFEESTPIQAKAIPIAM-SGADLIGQAQTGTGKTAAFGIPLIS 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ E E+ + AL++TPTRELA+QV D L ++A+ +R +
Sbjct: 63 KIPPEEER--------------------IVALVMTPTRELAIQVADELGKLARYKGIRTL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK +P++++GTPGRL + ++ + + L + VLDEAD M++
Sbjct: 103 PIYGGQDIGRQIRALKKKPQIIIGTPGRLLDHIN---RKTIRLDDVQTVVLDEADEMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++ +I+ ++P ++RQT++FSAT+ L+
Sbjct: 160 GFMEDITTILSLVP------------------------EERQTMLFSATMPPNIQKLAQQ 195
Query: 271 FRKKLKHGSL 280
F + +H S+
Sbjct: 196 FLRNPEHVSV 205
>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
Length = 509
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 125/230 (54%), Gaps = 49/230 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+NE+ L L+++I +GF+E TPIQ IP A +GKD+ G A+TG+GKT AFGLP+++
Sbjct: 3 FNEMNLSKPLLRAIEEMGFEEATPIQAQTIPMAL-EGKDVFGQAQTGTGKTAAFGLPLLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ E G ++ALII PTRELA+Q + L + K +
Sbjct: 62 KVHE---------------------TGGVQALIIEPTRELAVQTGEELYRLGKFKGIHTT 100
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG S Q +LLK P +V+GTPGR+ +L+ G +++L+ + VLDEAD M++
Sbjct: 101 TVYGGASIGHQIKLLKKNPPVVIGTPGRILDLIKRG---VLKLNNVETLVLDEADEMLKM 157
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++SII LP +RQTL+FSAT+
Sbjct: 158 GFVEDIESIIRELPT------------------------ERQTLLFSATV 183
>gi|255079330|ref|XP_002503245.1| predicted protein [Micromonas sp. RCC299]
gi|226518511|gb|ACO64503.1| predicted protein [Micromonas sp. RCC299]
Length = 605
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 123/240 (51%), Gaps = 45/240 (18%)
Query: 28 EISTEFDAWN--ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGK 85
E T F A N EL L L+K+ LG+ PTPIQ A +P A G+DI G A TGSGK
Sbjct: 142 EKDTTFSAANFTELNLSRPLVKACGALGYASPTPIQAAVVPLAL-TGRDICGRAVTGSGK 200
Query: 86 TLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 145
T AF LP ++R+L K P L++ PTRELA+QV +
Sbjct: 201 TAAFMLPCLERMLHRGPK----------------PVAATHVLVLVPTRELAVQVHQMTER 244
Query: 146 VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
+A+ +VR +VGG+S Q L++RPE+VV TPGRL + + H V L L+ V
Sbjct: 245 LAQFTSVRAALVVGGLSANVQATSLRSRPEVVVATPGRLIDHVRN--THSVGLEDLATLV 302
Query: 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
LDEADR++E G E++ I+ P K+RQT++FSAT+
Sbjct: 303 LDEADRLLEMGFLEEIREIVRHCP------------------------KRRQTMLFSATL 338
>gi|350638693|gb|EHA27049.1| hypothetical protein ASPNIDRAFT_130294 [Aspergillus niger ATCC
1015]
Length = 793
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 129/253 (50%), Gaps = 48/253 (18%)
Query: 20 EEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAA 79
EEE SE+ ++ ++ E L +++ + + F PTPIQ+ IP A GKDI+G+A
Sbjct: 268 EEEKTSESAMADAKRSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALL-GKDIVGSA 326
Query: 80 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELAL 137
TGSGKT AF +PI++RLL + P+ R I+ PTRELA+
Sbjct: 327 VTGSGKTAAFVVPILERLL-------------------FRPRKVPTSRVAILMPTRELAV 367
Query: 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
Q + ++A ++ +VGG S +QE +LK RP++++ TPGR + M V+
Sbjct: 368 QCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVD 427
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
TL VLDEADRM+E+G EL I+ +P K RQ
Sbjct: 428 --TLEILVLDEADRMLEDGFADELNEILTTIP------------------------KSRQ 461
Query: 258 TLVFSATIALSAD 270
T++FSAT+ + D
Sbjct: 462 TMLFSATMTDTVD 474
>gi|336322978|ref|YP_004602945.1| DEAD/DEAH box helicase [Flexistipes sinusarabici DSM 4947]
gi|336106559|gb|AEI14377.1| DEAD/DEAH box helicase domain protein [Flexistipes sinusarabici DSM
4947]
Length = 527
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 116/191 (60%), Gaps = 23/191 (12%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++EL L L++S+ + GF+EPTPIQ IP KD++G A+TG+GKT AFGLPIM
Sbjct: 6 SFDELGLSENLLRSVKKKGFEEPTPIQAQVIPTLLKSEKDVVGQAQTGTGKTAAFGLPIM 65
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
R++ + ++ ++ALI+ PTRELA+QV++ L + ++V
Sbjct: 66 DRIVSDEKR--------------------VKALILAPTRELAIQVSEELNSLKGKKKMKV 105
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
VPI GG S E Q + L + ++VVGTPGR+ + ++ + +++ L + VLDEAD M+
Sbjct: 106 VPIYGGQSIELQLKRLSSGADIVVGTPGRVIDHLN---RKTLDISRLDYLVLDEADEMLN 162
Query: 215 NGHFRELQSII 225
G +++SI+
Sbjct: 163 MGFIEDIESIL 173
>gi|300772766|ref|ZP_07082636.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
33861]
gi|300761069|gb|EFK57895.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
33861]
Length = 435
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 43/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L+L ++K++ G++ PTPIQ+ IP Q KD++ A+TG+GKT AF +PI+Q
Sbjct: 20 FKDLKLIAPILKALDASGYQNPTPIQEQAIPII-FQRKDLLACAQTGTGKTAAFAIPILQ 78
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L +EK + +R L++TPTRELA+Q+ ++ +K + +R +
Sbjct: 79 MLTYSKEKTAQ---------------KRIRTLVLTPTRELAIQIKENFDAYSKELPIRNL 123
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ + Q L+ ++++ TPGRL +L + G ++L L +FVLDEADRM++
Sbjct: 124 VIYGGVGQQPQRDALRKGIDILIATPGRLLDLYNQG---FIDLKQLEYFVLDEADRMLDM 180
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ +I ++P KKRQTL+FSAT+
Sbjct: 181 GFIHDVKKVISIIP------------------------KKRQTLLFSATM 206
>gi|255544594|ref|XP_002513358.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223547266|gb|EEF48761.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 502
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 129/263 (49%), Gaps = 45/263 (17%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++ L L +++ LG K PTP+Q CIP +GKD++G A+TGSGKT F LPI+
Sbjct: 65 FSNLGLAEWAVRTCKELGMKRPTPVQAHCIPKIL-EGKDVLGLAQTGSGKTATFALPILH 123
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL E+ P G + AL+ITPTRELA Q+ + + + +N+R
Sbjct: 124 RLAED-------------------PYG-IFALVITPTRELAYQLAEQFRALGSCLNLRCA 163
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+VGGM Q + L ARP +V+ TPGR+ L+ F VLDEADR+++
Sbjct: 164 VVVGGMDKLTQAKTLMARPHVVIATPGRVKVLLEDNPDIPSVFSKTKFLVLDEADRVLDV 223
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275
G EL+ + LP K RQTL+FSAT+ + + ++
Sbjct: 224 GFEDELRVVFQCLP------------------------KNRQTLLFSATMTSNLESLLEV 259
Query: 276 KHGSLKLKQSVNGLNSIETLSER 298
++ G +++TL ++
Sbjct: 260 SANKAYFYEAYEGFKTVDTLKQQ 282
>gi|405972018|gb|EKC36815.1| Putative ATP-dependent RNA helicase DDX23 [Crassostrea gigas]
Length = 778
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 138/236 (58%), Gaps = 23/236 (9%)
Query: 35 AWNELRLHPLLMKSIYRL----GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
+W E LL K I + G+KEPTPIQ+ IP Q +DIIG AETGSGKT AF
Sbjct: 348 SWRE---SGLLQKEILEVIEIAGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAAFL 403
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150
P+++ + K+ ++ YA +I+ PTRELA Q+ + + AK +
Sbjct: 404 FPLLKWITS----LPKLERFDDQDQGPYA-------IILAPTRELAQQIEEETIKFAKHL 452
Query: 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210
++R V I+GG+S E+Q L+ E+V+ TPGRL +++ ++LV L ++ V+DEAD
Sbjct: 453 DIRTVAIIGGISREEQGFKLRQGCEIVIATPGRLIDVLEN--RYLV-LAQCTYVVMDEAD 509
Query: 211 RMIENGHFRELQSIIDMLPMTNGS-NEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
RMI+ G ++Q I++ LP++N + +E Q + S ++K RQT++F+AT+
Sbjct: 510 RMIDMGFEPDVQKILEYLPVSNQKPDNDDAEDDQKMLQNFSSKKKYRQTVMFTATM 565
>gi|329956784|ref|ZP_08297353.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
gi|328523823|gb|EGF50910.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
Length = 372
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 128/230 (55%), Gaps = 45/230 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L + ++K+I G+ PTPIQ IPAA GKDI+G A+TG+GKT AF +PI+Q
Sbjct: 3 FKDLNITEPILKAIEEKGYTSPTPIQVKAIPAAL-TGKDILGCAQTGTGKTAAFAIPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L + G+E +K ++ALI+TPTRELALQ+++ + + AK VR
Sbjct: 62 HL------------QAGKERDK-----SIKALILTPTRELALQISECIDDYAKYTQVRHG 104
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG++ Q +L +++V TPGRL +LM+ G + L ++ FVLDEADRM++
Sbjct: 105 VIFGGVNQRAQVNMLHKGVDILVATPGRLLDLMNQG---YIRLDSVRHFVLDEADRMLDM 161
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ ++ LP K++QTL FSAT+
Sbjct: 162 GFIHDIKRLLPKLP------------------------KEKQTLFFSATM 187
>gi|157960747|ref|YP_001500781.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157845747|gb|ABV86246.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 432
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 126/235 (53%), Gaps = 51/235 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ P ++++I G+++ TPIQ+ IPA +G+D++ +A+TG+GKT AF LPI+Q
Sbjct: 3 FESFSFAPEILRAISECGYEKMTPIQQQAIPAV-RRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++L+ G+ + RALI+TPTRELA Q+ D++ + AK ++++VV
Sbjct: 62 KMLDNPSTTGR---------------SNARALILTPTRELAAQIADNINDYAKYLDLKVV 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV----ELHTLSFFVLDEADR 211
+ GG+ + Q LK ++++ TPGRL E H++ L + F VLDEADR
Sbjct: 107 TVYGGVKMDSQATKLKRGADIIIATPGRLLE-------HIIACNLSLSNVDFLVLDEADR 159
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
M++ G ++Q I+ + KKRQ L+FSAT +
Sbjct: 160 MLDMGFSADIQKILQAV------------------------NKKRQNLLFSATFS 190
>gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase [Ralstonia pickettii 12J]
gi|404396603|ref|ZP_10988397.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
gi|348613693|gb|EGY63272.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
Length = 493
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 136/263 (51%), Gaps = 48/263 (18%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+ A S FD++ LHP +++++ G+ +PTPIQ A IP G D++GAA+TG+G
Sbjct: 7 APANESVTFDSFG---LHPDVLRALTESGYTKPTPIQAAAIPVVT-AGHDVMGAAQTGTG 62
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHL 143
KT F LPI+ LL + + +P H +RALI+TPTRELA QV D++
Sbjct: 63 KTAGFSLPIIHNLLPDANTSA-------------SPARHPVRALILTPTRELADQVYDNV 109
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
+ AK +R + GG+ Q L+ E++V TPGRL + + ++ V L +
Sbjct: 110 AKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV---QQRSVNLSQVRM 166
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
VLDEADRM++ G +LQ II++LP RQTL+FSA
Sbjct: 167 LVLDEADRMLDMGFLPDLQRIINLLP------------------------AHRQTLLFSA 202
Query: 264 TIALSADFRKKLKHGSLKLKQSV 286
T + K+L L+ Q++
Sbjct: 203 TFSPEI---KRLAASYLRHPQTI 222
>gi|298482320|ref|ZP_07000507.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
gi|298271607|gb|EFI13181.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
Length = 374
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 129/230 (56%), Gaps = 43/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++K+I G+ PTPIQ+ IP A + +DI+G A+TG+GKT +F +PI+Q
Sbjct: 3 FKELNITEPILKAIEEKGYTVPTPIQEKAIPPALAK-RDILGCAQTGTGKTASFAIPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L ++E A + ++ALI+TPTRELALQ+++ + + +K +R
Sbjct: 62 HLQLDKEAARRQ---------------GIKALILTPTRELALQISECIDDYSKHTRIRHG 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG++ Q LL+ +++V TPGRL +LM+ G H L T+ +FVLDEADRM++
Sbjct: 107 VIFGGVNQRPQVDLLRKGIDILVATPGRLLDLMTQGHIH---LDTIQYFVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ LP K++QTL FSAT+
Sbjct: 164 GFIHDIKRILPKLP------------------------KEKQTLFFSATM 189
>gi|445499097|ref|ZP_21465952.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444789092|gb|ELX10640.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 550
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 126/232 (54%), Gaps = 42/232 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + L P +++++ G+ PTPIQ IP QG+D++GAA+TG+GKT F LPI+Q
Sbjct: 67 FADFGLSPHILRALTDQGYVHPTPIQAQAIPVLL-QGRDVMGAAQTGTGKTAGFALPIIQ 125
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRV 154
LL + +P H +RALI+TPTRELA+QV +++K A+ +R
Sbjct: 126 MLL-------------AHASTSTSPARHPVRALILTPTRELAVQVAENVKAYAQHTPLRS 172
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GGM + Q +LKA E+V+ TPGRL + + E+ + L + V+DEADRM++
Sbjct: 173 TVVFGGMDMKGQTVILKAGVEIVIATPGRLLDHV---EQKNISLGQVQMLVMDEADRMLD 229
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +LQ II++LP KRQ L+FSAT +
Sbjct: 230 MGFLPDLQRIINLLP------------------------AKRQNLMFSATFS 257
>gi|348026760|ref|YP_004766565.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
elsdenii DSM 20460]
gi|341822814|emb|CCC73738.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
elsdenii DSM 20460]
Length = 526
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 127/233 (54%), Gaps = 46/233 (19%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
+ + L + ++++++ +GF+EPTPIQ IP A G D+IG A+TG+GKT A+G+P
Sbjct: 2 LEQFQNLNISEVIIRALNEMGFEEPTPIQAESIPVAM-SGSDMIGQAQTGTGKTAAYGIP 60
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+++++L K P ++ ++++PTRELA+QV + L +A+ N+
Sbjct: 61 VLEKIL------------------KAEPSKDIQTVVLSPTRELAMQVAEELNHLAQFTNI 102
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ +PI GG E+Q R L+ P+++V TPGRL + M G ++L ++ VLDEAD M
Sbjct: 103 QALPIYGGQDMERQLRRLRKCPQIIVATPGRLIDHMKRG---TIDLSHITTIVLDEADEM 159
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ G ++ I+ P T RQTL+FSAT+
Sbjct: 160 LDMGFIDDINIIMAATPNT------------------------RQTLLFSATM 188
>gi|452986589|gb|EME86345.1| hypothetical protein MYCFIDRAFT_202484 [Pseudocercospora fijiensis
CIRAD86]
Length = 756
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 128/254 (50%), Gaps = 51/254 (20%)
Query: 19 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
A EE S +T F + N L ++K + +GF +PTPIQ IP A +GKD++G
Sbjct: 222 AAEETKSAKATATAFHSMN---LSRQILKGLAAVGFDKPTPIQAKTIPVAL-EGKDLVGG 277
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIITPTRELA 136
A TGSGKT AF +PI++RLL Y P+ R I+ PTRELA
Sbjct: 278 AVTGSGKTAAFLIPILERLL-------------------YRPRNAATTRVAILMPTRELA 318
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
LQ + K++A ++ +GG+++ +QE+ LK RP++V+ TPGR +L V
Sbjct: 319 LQCFNVAKKLAAHTDITFGQAIGGLNSREQEKQLKLRPDIVIATPGRFIDLERNSASFAV 378
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
+T+ VLDEADRM+E G EL I+ +P K R
Sbjct: 379 --NTIEILVLDEADRMLEEGFADELNEILTKIP------------------------KSR 412
Query: 257 QTLVFSATIALSAD 270
QT++FSAT+ D
Sbjct: 413 QTMLFSATMTSKVD 426
>gi|50311527|ref|XP_455788.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660268|sp|Q6CJV1.1|DRS1_KLULA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49644924|emb|CAG98496.1| KLLA0F15752p [Kluyveromyces lactis]
Length = 748
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 124/234 (52%), Gaps = 51/234 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+N L L ++K + LG+ P+PIQ A IP A GKDII A TGSGKT AF +PI++
Sbjct: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALL-GKDIIAGAVTGSGKTAAFMIPIIE 293
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHL---RALIITPTRELALQVTDHLKEVAKGINV 152
RLL Y P H+ R +++TPTRELA+QV D K + K +N
Sbjct: 294 RLL-------------------YKP-AHIASTRVVVLTPTRELAIQVADVGKNIGKFVNG 333
Query: 153 RVVPI-VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+ VGG++ +QE+ LK RP++V+ TPGR + + V+ ++ V+DEADR
Sbjct: 334 LTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVD--SVEILVIDEADR 391
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
M+E G ELQ I+ ++P KRQTL+FSAT+
Sbjct: 392 MLEEGFQEELQEIMSLIP------------------------SKRQTLLFSATM 421
>gi|227538144|ref|ZP_03968193.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
gi|227241987|gb|EEI92002.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
Length = 435
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 43/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L+L ++K++ G++ PTPIQ+ IP Q KD++ A+TG+GKT AF +PI+Q
Sbjct: 20 FKDLKLIAPILKALEASGYQNPTPIQEQAIPII-FQRKDLLACAQTGTGKTAAFAIPILQ 78
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L +EK + +R L++TPTRELA+Q+ ++ +K + +R +
Sbjct: 79 MLTYSKEKTAQ---------------KRIRTLVLTPTRELAIQIKENFDAYSKELPIRNL 123
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ + Q L+ ++++ TPGRL +L + G ++L L +FVLDEADRM++
Sbjct: 124 VIYGGVGQQPQRDALRKGIDILIATPGRLLDLYNQG---FIDLKQLEYFVLDEADRMLDM 180
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ +I ++P KKRQTL+FSAT+
Sbjct: 181 GFIHDVKKVISIIP------------------------KKRQTLLFSATM 206
>gi|84684138|ref|ZP_01012040.1| hypothetical protein 1099457000262_RB2654_16856 [Maritimibacter
alkaliphilus HTCC2654]
gi|84667891|gb|EAQ14359.1| hypothetical protein RB2654_16856 [Rhodobacterales bacterium
HTCC2654]
Length = 439
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 115/189 (60%), Gaps = 19/189 (10%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+N+L L P L+ ++ G++ P+PIQ IP A G D++G A+TG+GKT AFGLP++Q
Sbjct: 4 FNDLGLDPKLLAAVKAAGYQTPSPIQVQAIPHAL-AGTDVLGLAQTGTGKTAAFGLPLVQ 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+LL +K PKG +RAL++ PTREL Q+ D+L KG +++V
Sbjct: 63 QLLGGHDK--------------REPKG-VRALVLAPTRELVNQIADNLIAYVKGTHIKVN 107
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+VGG S KQ ++L +++V TPGRL +LM ++ V L T +F VLDEAD+M++
Sbjct: 108 TVVGGKSINKQVQILAKGTDILVATPGRLIDLM---DRKAVRLDTATFLVLDEADQMLDM 164
Query: 216 GHFRELQSI 224
G L+ I
Sbjct: 165 GFIHALRRI 173
>gi|209543288|ref|YP_002275517.1| DEAD/DEAH box helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209530965|gb|ACI50902.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 596
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 145/281 (51%), Gaps = 59/281 (20%)
Query: 42 HPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEER 101
HP L +++ G++EPTP+QKA + AA G+D++ +A+TGSGKT+AFGL + LL
Sbjct: 7 HPALRRALDARGYEEPTPVQKAVLDVAA-DGRDLLVSAQTGSGKTVAFGLAMADTLLGG- 64
Query: 102 EKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGM 161
AE++ P G A+II PTRELA+QV L + R+V +GGM
Sbjct: 65 -------------AERFGPAGAPLAVIIAPTRELAMQVQRELSWLYAPAGARIVSCIGGM 111
Query: 162 STEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFREL 221
++ R L+ +VVGTPGRL + S G L EL + VLDEAD M++ G EL
Sbjct: 112 DARREARALEIGAHIVVGTPGRLCDHQSRGRLVLSELRVV---VLDEADEMLDLGFRDEL 168
Query: 222 QSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRKKLKHGSL 280
Q ++D +P T R+TL+FSATIA A ++ + +L
Sbjct: 169 QQLLDAMPDT------------------------RRTLLFSATIAKDIATLARRYQRDAL 204
Query: 281 KLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLE 321
+ I+TLS G R + D+T +V+A+ E
Sbjct: 205 R----------IDTLS---GARQH---ADITYRAVMADPRE 229
>gi|142982528|sp|A2QAX7.1|DRS1_ASPNC RecName: Full=ATP-dependent RNA helicase drs1
gi|134055839|emb|CAK37361.1| unnamed protein product [Aspergillus niger]
Length = 824
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 129/253 (50%), Gaps = 48/253 (18%)
Query: 20 EEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAA 79
EEE SE+ ++ ++ E L +++ + + F PTPIQ+ IP A GKDI+G+A
Sbjct: 295 EEEKTSESAMADAKRSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALL-GKDIVGSA 353
Query: 80 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELAL 137
TGSGKT AF +PI++RLL + P+ R I+ PTRELA+
Sbjct: 354 VTGSGKTAAFVVPILERLL-------------------FRPRKVPTSRVAILMPTRELAV 394
Query: 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
Q + ++A ++ +VGG S +QE +LK RP++++ TPGR + M V+
Sbjct: 395 QCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVD 454
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
TL VLDEADRM+E+G EL I+ +P K RQ
Sbjct: 455 --TLEILVLDEADRMLEDGFADELNEILTTIP------------------------KSRQ 488
Query: 258 TLVFSATIALSAD 270
T++FSAT+ + D
Sbjct: 489 TMLFSATMTDTVD 501
>gi|384548306|ref|YP_005737559.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
ED133]
gi|298695355|gb|ADI98577.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
ED133]
Length = 487
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 120/214 (56%), Gaps = 48/214 (22%)
Query: 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111
+GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 1 MGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI----------------- 42
Query: 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK 171
EK K +++LI+ PTRELA+QV + L+E ++G V+VV + GGM E+Q + LK
Sbjct: 43 ----EKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALK 98
Query: 172 ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231
P++VVGTPGR+ + ++ +HTL +LDEAD M+ G +++ I+D +P
Sbjct: 99 KGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNMGFIDDMRFIMDKIPAV 155
Query: 232 NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+RQT++FSAT+
Sbjct: 156 -----------------------QRQTMLFSATM 166
>gi|83950175|ref|ZP_00958908.1| putative ATP-dependent RNA helicase protein [Roseovarius
nubinhibens ISM]
gi|83838074|gb|EAP77370.1| putative ATP-dependent RNA helicase protein [Roseovarius
nubinhibens ISM]
Length = 431
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 125/233 (53%), Gaps = 44/233 (18%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
FD ++ L L P L +++ R GF EPTPIQ IP A +G DI+G A+TG+GKTLAFGLP
Sbjct: 2 FD-FDMLGLAPALNEALTRAGFSEPTPIQNQAIPLAL-EGHDILGLAQTGTGKTLAFGLP 59
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
++ LL E G+ A K A +ALI+ PTREL Q+ D L+ + G +
Sbjct: 60 LINHLLAE----------PGKPAPKTA-----KALILAPTRELVNQIADSLRNLTDGTRL 104
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
RV +VGG S +Q L +++V TPGRL +LM ++ V+L ++ VLDEAD+M
Sbjct: 105 RVATVVGGQSINRQITFLARGTDILVATPGRLIDLM---DRRAVDLGSVRHLVLDEADQM 161
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ G L+ I L RQT++FSAT+
Sbjct: 162 LDLGFIHALRKIAPRL------------------------GTPRQTMLFSATM 190
>gi|359475106|ref|XP_003631587.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Vitis
vinifera]
Length = 712
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 133/241 (55%), Gaps = 27/241 (11%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
++I +W E +L L+K++ R G+K P+PIQ A IP Q +D+IG AETGSGKT
Sbjct: 285 SKIPRPMRSWVESKLSTELLKAVERAGYKTPSPIQMAAIPLGLQQ-RDVIGIAETGSGKT 343
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF LP++ + L EE E P A+++ PTRELA Q+ D +
Sbjct: 344 AAFVLPMLTYI--------SRLPPMSEENEAEGPY----AVVMAPTRELAQQIEDETVKF 391
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
A + ++VV IVGG S E+Q ++ E+V+ TPGRL + + E+ L+ ++ VL
Sbjct: 392 AHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL---ERRYAVLNQCNYVVL 448
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK--RQTLVFSAT 264
DEADRMI+ G ++ ++D +P +N E + E+ L KK R T +FSAT
Sbjct: 449 DEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEE---------LDEKKIYRTTYMFSAT 499
Query: 265 I 265
+
Sbjct: 500 M 500
>gi|317025749|ref|XP_001389716.2| ATP-dependent RNA helicase drs1 [Aspergillus niger CBS 513.88]
Length = 827
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 129/253 (50%), Gaps = 48/253 (18%)
Query: 20 EEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAA 79
EEE SE+ ++ ++ E L +++ + + F PTPIQ+ IP A GKDI+G+A
Sbjct: 295 EEEKTSESAMADAKRSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALL-GKDIVGSA 353
Query: 80 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELAL 137
TGSGKT AF +PI++RLL + P+ R I+ PTRELA+
Sbjct: 354 VTGSGKTAAFVVPILERLL-------------------FRPRKVPTSRVAILMPTRELAV 394
Query: 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
Q + ++A ++ +VGG S +QE +LK RP++++ TPGR + M V+
Sbjct: 395 QCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVD 454
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
TL VLDEADRM+E+G EL I+ +P K RQ
Sbjct: 455 --TLEILVLDEADRMLEDGFADELNEILTTIP------------------------KSRQ 488
Query: 258 TLVFSATIALSAD 270
T++FSAT+ + D
Sbjct: 489 TMLFSATMTDTVD 501
>gi|260941344|ref|XP_002614838.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
gi|238851261|gb|EEQ40725.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
Length = 748
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 131/255 (51%), Gaps = 46/255 (18%)
Query: 14 NGPDDAEE--ELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
N D AE E +AE ++ L L ++K + LG+ +P+PIQ A IP A
Sbjct: 214 NDEDSAEAIAEFYEKAESDQAHKSFQSLDLARPVLKGLASLGYTKPSPIQSASIPIAL-L 272
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131
GKDI+ A TGSGKT A+ +PI++RLL + K R +I+TP
Sbjct: 273 GKDIVAGAVTGSGKTAAYMIPIIERLLYKSSKVAST-----------------RVVILTP 315
Query: 132 TRELALQVTDHLKEVAKGINVRVVPI-VGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
TRELA+QV D K++ + +N + VGG++ +QE+ LK RP++VV TPGRL + +
Sbjct: 316 TRELAIQVCDVGKKIGRYVNNLTFGLAVGGLNLRQQEQQLKTRPDIVVATPGRLIDHIRN 375
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
L L V+DEADRM+E G EL I+ ++P
Sbjct: 376 SAS--FSLDALEILVMDEADRMLEEGFQVELTEILTLIP--------------------- 412
Query: 251 LQRKKRQTLVFSATI 265
+ KRQT++FSAT+
Sbjct: 413 --KHKRQTMLFSATM 425
>gi|302142686|emb|CBI19889.3| unnamed protein product [Vitis vinifera]
Length = 875
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 120/204 (58%), Gaps = 27/204 (13%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
+++ EL L L+++ LG+ +PTPIQ ACIP A G+DI G+A TGSGKT AF LP
Sbjct: 125 NSFLELNLSRPLLRACEALGYTKPTPIQAACIPIAL-TGRDICGSAITGSGKTAAFSLPT 183
Query: 94 MQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIITPTRELALQVTDHLKEVAKGIN 151
++RLL + PK +R L++TPTRELA+QV ++++A+ +
Sbjct: 184 LERLL-------------------FRPKRVQAIRVLVLTPTRELAVQVHSMMEKLAQFTD 224
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+R IVGG+S++ QE L++ P++VV TPGR+ + + V+L L+ +LDEADR
Sbjct: 225 IRCCLIVGGLSSKMQETALRSMPDVVVATPGRMIDHLRNSMS--VDLEDLAVLILDEADR 282
Query: 212 MIE---NGHFRELQSIIDMLPMTN 232
++E N REL+ L N
Sbjct: 283 LLELGFNAEIRELRCCYLYLSHFN 306
>gi|333895980|ref|YP_004469854.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111245|gb|AEF16182.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 513
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 130/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L+ ++K+I +GF+EP+ IQ IP +G D+IG AETG+GKTLA+G PI+
Sbjct: 3 FKELHLNEKILKAIDDMGFEEPSKIQSEVIPVLL-EGLDVIGQAETGTGKTLAYGAPIIN 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ G + L++TPTRELA+QV D L + K VR++
Sbjct: 62 NF--------------------SSNDGKVFCLVLTPTRELAIQVNDELARIGKYSKVRLL 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG+ ++Q + +K ++VVGTPGR+ +L+ ++++++L ++ + V+DEAD M++
Sbjct: 102 PVYGGVQIDRQIKAIKRGVDIVVGTPGRVLDLI---KRNVLDLKSVRYLVIDEADEMMDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II N +N K+RQT++FSAT+
Sbjct: 159 GFIDDIKEII------NHTN------------------KERQTMMFSATM 184
>gi|322706999|gb|EFY98578.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Metarhizium
anisopliae ARSEF 23]
Length = 714
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 130/232 (56%), Gaps = 17/232 (7%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W E L L+ + R+G+KEPTPIQ+A IP A Q +D+IG A TGSGKT AF LP++
Sbjct: 273 SWEESGLPQRLLDIVDRVGYKEPTPIQRAAIPIAL-QARDLIGVAVTGSGKTAAFLLPLL 331
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ + L E + YA LI+ PTREL Q+ K+ A+ + R
Sbjct: 332 VYISDL-----PPLTEVNKNDGPYA-------LILAPTRELVQQIETEAKKFAEPLGFRC 379
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V IVGG S E+Q L+ E++V TPGRL + + E+ L+ L + ++DEADRMI+
Sbjct: 380 VSIVGGHSLEEQAFALRNGAEIIVATPGRLVDCI---ERRLLVLSQCCYIIMDEADRMID 436
Query: 215 NGHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G + I+D LP++N + +E Q + + K RQT++++AT+
Sbjct: 437 LGFEESVNKILDALPVSNEKPDTDDAENAQLMKSYLGSRDKYRQTMMYTATM 488
>gi|224135589|ref|XP_002322111.1| predicted protein [Populus trichocarpa]
gi|222869107|gb|EEF06238.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 134/241 (55%), Gaps = 27/241 (11%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
++I +W E +L L+K++ R+ +K+P+PIQ A IP Q +D+IG AETGSGKT
Sbjct: 283 SKIPRPMRSWAESKLSSELLKAVERVVYKKPSPIQMAAIPLGLQQ-RDVIGIAETGSGKT 341
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF LP++ + L EE E P A+++ PTRELA Q+ D +
Sbjct: 342 CAFVLPMLTYI--------SRLPPMSEENEAEGPY----AVVMAPTRELAQQIEDETVKF 389
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
A + ++VV IVGG S E+Q ++ E+V+ TPGRL + + E+ L+ ++ VL
Sbjct: 390 AHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL---ERRYAVLNQCNYVVL 446
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK--RQTLVFSAT 264
DEADRMI+ G ++ ++D +P +N E + E+ L KK R T +FSAT
Sbjct: 447 DEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEE---------LDEKKIYRTTYMFSAT 497
Query: 265 I 265
+
Sbjct: 498 M 498
>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 484
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 131/244 (53%), Gaps = 42/244 (17%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
+S+ ++ + +++ L P ++K+I G+ PTPIQ IP G+D++GAA+TG+
Sbjct: 1 MSDTAVTPSTETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVL-AGRDVMGAAQTGT 59
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDH 142
GKT +F LPI+QRLL + + +P H +RALI+TPTRELA QV +
Sbjct: 60 GKTASFSLPIIQRLLPQANTSA-------------SPARHPVRALILTPTRELADQVAAN 106
Query: 143 LKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202
++ AK +R + GG+ Q L+ E+++ TPGRL + + ++ L +
Sbjct: 107 VQAYAKHTALRSAVVFGGVDMNPQSDQLRRGVEILIATPGRLLDHV---QQKTANLGQVQ 163
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262
VLDEADRM++ G +LQ I+++LP K+RQTL+FS
Sbjct: 164 MLVLDEADRMLDMGFLPDLQRILNLLP------------------------KERQTLLFS 199
Query: 263 ATIA 266
AT +
Sbjct: 200 ATFS 203
>gi|322701026|gb|EFY92777.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Metarhizium
acridum CQMa 102]
Length = 712
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 130/232 (56%), Gaps = 17/232 (7%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W E L L+ + R+G+KEPTPIQ+A IP A Q +D+IG A TGSGKT AF LP++
Sbjct: 272 SWEESGLPQRLLDIVDRVGYKEPTPIQRAAIPIAL-QARDLIGVAVTGSGKTAAFLLPLL 330
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ + L E + P ALI+ PTREL Q+ K+ A+ + R
Sbjct: 331 VYISD--------LPPLTEVNKNDGPY----ALILAPTRELVQQIETEAKKFAEPLGFRC 378
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V IVGG S E+Q L+ E++V TPGRL + + E+ L+ L + ++DEADRMI+
Sbjct: 379 VSIVGGHSLEEQAFALRNGAEIIVATPGRLVDCI---ERRLLVLSQCCYIIMDEADRMID 435
Query: 215 NGHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G + I+D LP++N + +E Q + + K RQT++++AT+
Sbjct: 436 LGFEESVNKILDALPVSNEKPDTDDAENAQLMKSYLGSRDKYRQTMMYTATM 487
>gi|409407327|ref|ZP_11255778.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386433078|gb|EIJ45904.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 487
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 129/243 (53%), Gaps = 47/243 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + L P ++K++ G+ PTPIQ IP QG+D++GAA+TG+GKT F LPI+Q
Sbjct: 18 FEDFGLSPDILKALSEQGYVHPTPIQAQAIPVVL-QGRDVMGAAQTGTGKTAGFSLPIIQ 76
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRV 154
RLL + +P H +RALI+TPTRELA QV +++K ++ +R
Sbjct: 77 RLL-------------AHASHSASPARHPVRALILTPTRELADQVAENVKAYSRFTPLRS 123
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG+ Q L+A E+V+ TPGRL + + ++ V L V+DEADRM++
Sbjct: 124 TVVFGGVDMAPQTATLRAGVEIVIATPGRLLDHV---QQKTVNLSQTQILVMDEADRMLD 180
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSA 269
G +LQ II++LP K+RQ L+FSAT + L+A
Sbjct: 181 MGFLPDLQRIINLLP------------------------KQRQNLLFSATFSPEIKKLAA 216
Query: 270 DFR 272
F+
Sbjct: 217 SFQ 219
>gi|358370127|dbj|GAA86739.1| ATP-dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 832
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 129/253 (50%), Gaps = 48/253 (18%)
Query: 20 EEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAA 79
EEE SE+ ++ ++ E L +++ + + F PTPIQ+ IP A GKDI+G+A
Sbjct: 300 EEEKTSESAMADAKRSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALL-GKDIVGSA 358
Query: 80 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELAL 137
TGSGKT AF +PI++RLL + P+ R I+ PTRELA+
Sbjct: 359 VTGSGKTAAFVVPILERLL-------------------FRPRKVPTSRVAILMPTRELAV 399
Query: 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
Q + ++A ++ +VGG S +QE +LK RP++++ TPGR + M V+
Sbjct: 400 QCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVD 459
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
TL VLDEADRM+E+G EL I+ +P K RQ
Sbjct: 460 --TLEILVLDEADRMLEDGFADELNEILTTIP------------------------KSRQ 493
Query: 258 TLVFSATIALSAD 270
T++FSAT+ + D
Sbjct: 494 TMLFSATMTDTVD 506
>gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
gi|74897154|sp|Q54TJ4.1|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName:
Full=DEAD box protein 27
gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
Length = 783
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 128/237 (54%), Gaps = 44/237 (18%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
+ E + EL L L+K++ +LGF +PTPIQ IP A + GKDI+ +A TGSGKT A
Sbjct: 185 VEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALN-GKDILASASTGSGKTAA 243
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F LP+++RLL ++E A +R LI+ PTRELALQ ++ +A+
Sbjct: 244 FLLPVLERLL-------------FRDSEYRA----IRVLILLPTRELALQCQSVMENLAQ 286
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
N+ IVGG+S + QE L+ P++V+ TPGRL + + H + L L +LDE
Sbjct: 287 FSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNA--HGIGLDDLEILILDE 344
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
ADR+++ G E+ I++ P TN RQT++FSAT+
Sbjct: 345 ADRLLDMGFKDEINKIVESCP-TN-----------------------RQTMLFSATL 377
>gi|261415437|ref|YP_003249120.1| DEAD/DEAH box helicase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371893|gb|ACX74638.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 486
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 130/230 (56%), Gaps = 43/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L +++ +G++ PTPIQ+ IP+ +GKD++G A+TG+GKT AF LPI+Q
Sbjct: 3 FEELPLANPLQRAVRAVGYETPTPIQERSIPSLL-EGKDLLGIAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RLL+ +GK +PK RALI+ PTRELA+QV D +E A+ +
Sbjct: 62 RLLD----SGKF----------RSPKT-CRALILLPTRELAIQVEDCFREYAQFTAISTA 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG++ Q++ L +++V TPGRL +L+ G+K + L L FFVLDEADRM++
Sbjct: 107 CIFGGVNDNPQKQKLIRGVDVLVATPGRLLDLI--GQK-AISLKKLEFFVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ ++ MLP + RQ L FSAT+
Sbjct: 164 GFIHDIRKVVAMLP------------------------QDRQNLFFSATM 189
>gi|255534886|ref|YP_003095257.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
3519-10]
gi|255341082|gb|ACU07195.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
3519-10]
Length = 417
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 121/230 (52%), Gaps = 45/230 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L+L + K++ G+ +PTPIQ IP+ QG+D++G A+TG+GKT AF +PI+Q
Sbjct: 3 FTDLQLIDPIAKALQEEGYTQPTPIQAKAIPSIL-QGRDLLGTAQTGTGKTAAFAIPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L EK ++ALI+TPTRELA+Q+ + + + +R +
Sbjct: 62 NL-----------------TEKNIRNNQIKALILTPTRELAIQIEESFNAYGRHLRLRNL 104
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG+ QE LK +++V TPGRL + +S G ++ L L FVLDEADRM++
Sbjct: 105 VVFGGVKQSGQEAALKKGVDILVATPGRLLDFISQG---IISLKNLEIFVLDEADRMLDM 161
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II +LP KRQTL FSAT
Sbjct: 162 GFVHDVKRIIKLLP------------------------PKRQTLFFSATF 187
>gi|452845761|gb|EME47694.1| hypothetical protein DOTSEDRAFT_77927 [Dothistroma septosporum
NZE10]
Length = 1056
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 141/266 (53%), Gaps = 60/266 (22%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
A++ + L ++K + +GF +PTPIQ +P A +GKD++G A TGSGKT AF +PI+
Sbjct: 532 AFHSMNLSRPILKGLASVGFDKPTPIQMKAVPVAL-EGKDLVGGAVTGSGKTAAFLIPIL 590
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIITPTRELALQVTDHLKEVAKGINV 152
+RLL Y PK R I+ PTRELALQ + K+++ ++
Sbjct: 591 ERLL-------------------YRPKRTSMTRVAILMPTRELALQCFNVAKKLSAFTDI 631
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL--VELHTLSFFVLDEAD 210
V VGG+S ++Q++ LK RP++V+ TPGR +L E++ +++ T+ VLDEAD
Sbjct: 632 SVAMAVGGLSIKEQDKELKMRPDIVIATPGRFIDL----ERNYRSLDVGTIEILVLDEAD 687
Query: 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
RM+E G EL I+ +P K RQT++FSAT+ D
Sbjct: 688 RMLEEGFADELNEILSKIP------------------------KSRQTMLFSATMTTKVD 723
Query: 271 --FRKKLKHGSLKL-----KQSVNGL 289
R L+ ++L KQ+V+GL
Sbjct: 724 DLVRSGLQR-PVRLMVDAQKQTVSGL 748
>gi|418915213|ref|ZP_13469180.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377754656|gb|EHT78563.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC340D]
Length = 506
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++S+ +GFKEPTPIQK IP A QG DI+G A+TG+GKT AFG+P++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL-QGIDILGQAQTGTGKTGAFGIPLI- 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK K +++LI+ PTRELA+QV + L+E ++ V+VV
Sbjct: 62 --------------------EKVVGKQGVQSLILAPTRELAMQVAEQLREFSREQGVQVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GGM E+Q + LK P++VVGTPGR+ + ++ +HTL +LDEAD M+
Sbjct: 102 TVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTL---ILDEADEMMNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+D +P +RQT++FSAT+
Sbjct: 159 GFIDDMRFIMDKIPAV-----------------------QRQTMLFSATM 185
>gi|440288419|ref|YP_007341184.1| DNA/RNA helicase, superfamily II [Enterobacteriaceae bacterium
strain FGI 57]
gi|440047941|gb|AGB78999.1| DNA/RNA helicase, superfamily II [Enterobacteriaceae bacterium
strain FGI 57]
Length = 463
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 142/252 (56%), Gaps = 47/252 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L P ++++I LG++EPTPIQ+ IPA QG+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLSPEILRAIVELGYREPTPIQQQAIPAVL-QGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q L+ + A KG +RALI+TPTRELA Q+ ++++E ++ +N+R
Sbjct: 61 QHLITTQPHA------KGRRP--------VRALILTPTRELAAQIGENVREYSQYLNIRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q L+ +++V TPGRL +L ++ V+L + VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLE---HQNAVKLDGIEILVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR-- 272
G +++ ++ LP KRQ L+FSAT S D +
Sbjct: 164 MGFIHDIRRVLAKLPA------------------------KRQNLLFSAT--FSDDIKAL 197
Query: 273 -KKLKHGSLKLK 283
+KL H L+++
Sbjct: 198 AEKLLHNPLEIE 209
>gi|268529640|ref|XP_002629946.1| Hypothetical protein CBG03667 [Caenorhabditis briggsae]
Length = 565
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 126/249 (50%), Gaps = 49/249 (19%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
+D + +SE ++T ++EL + + + + + K TP+Q ACIP G DI+
Sbjct: 78 NDPQPFQISEDNMTTR--KFSELGVSSWITQQLQTMHIKTATPVQAACIPRIL-DGSDIL 134
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
G A TG+GKTLAF +PI+Q+L P G + ALI+TPTRELA
Sbjct: 135 GCARTGTGKTLAFAIPILQKL-------------------SIDPYG-IYALILTPTRELA 174
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
Q+ D V K I ++ IVGG S Q R L RP +VV TPGRL +L+ + +
Sbjct: 175 FQIADQFTAVGKPITLKCSVIVGGRSLIHQARELSERPHIVVATPGRLTDLIESDPEVIA 234
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
+ + FFVLDEADRM+E + +L+ I +P +KR
Sbjct: 235 K--KIQFFVLDEADRMLEGQYNDQLKPIFQSIP------------------------EKR 268
Query: 257 QTLVFSATI 265
QTL+ SATI
Sbjct: 269 QTLLLSATI 277
>gi|393905846|gb|EJD74089.1| DEAD box ATP-dependent RNA helicase [Loa loa]
Length = 757
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 135/232 (58%), Gaps = 16/232 (6%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+E L + I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKT AF +P++
Sbjct: 329 WDEAGLPSEVFDVIMKIGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAAFLIPLLV 387
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ + + G + + P A+I+ PTRELA Q+ + + + + +R V
Sbjct: 388 WITS-------IPKFHGNDEQDTGP----YAIIMAPTRELAQQIEEETVKFGQLLGIRTV 436
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
++GG S E+Q L+ E+V+ TPGRL +++ E + L ++ +LDEADRM++
Sbjct: 437 SVIGGASREEQGLKLRLGVEVVIATPGRLLDVL---ENRYLSLDQCTYVILDEADRMLDM 493
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATIA 266
G E+Q +++ +P+TN + + + + + + +KK RQT++F+AT++
Sbjct: 494 GFEPEVQKVLEYIPVTNLKPDTEDAEKEESIMENFFSKKKYRQTVMFTATMS 545
>gi|423229947|ref|ZP_17216352.1| hypothetical protein HMPREF1063_02172 [Bacteroides dorei
CL02T00C15]
gi|423247037|ref|ZP_17228088.1| hypothetical protein HMPREF1064_04294 [Bacteroides dorei
CL02T12C06]
gi|392632157|gb|EIY26120.1| hypothetical protein HMPREF1063_02172 [Bacteroides dorei
CL02T00C15]
gi|392633650|gb|EIY27591.1| hypothetical protein HMPREF1064_04294 [Bacteroides dorei
CL02T12C06]
Length = 434
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K++ + G+ PTPIQ+ IP +GKD++G A+TG+GKT AF +P++Q
Sbjct: 3 FKELDLIEPILKALQQTGYTTPTPIQEQAIPVLL-KGKDLLGCAQTGTGKTAAFAIPLIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL + K G ++ALI+TPTRELA+Q+ ++ + AK V+
Sbjct: 62 RLYQSDHKKG------------------IKALILTPTRELAIQIGENFDQYAKYTGVKHA 103
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ + Q LK ++++ TPGRL +L S G + L L +FVLDEADRM++
Sbjct: 104 VIFGGVPQKAQVDALKRGVQVLIATPGRLLDLQSQG---CISLKGLEYFVLDEADRMLDM 160
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ ++ ++P +RQTL FSAT+
Sbjct: 161 GFIHDIKKVLKLIPA------------------------RRQTLFFSATM 186
>gi|403382424|ref|ZP_10924481.1| ATP-dependent RNA helicase [Paenibacillus sp. JC66]
Length = 442
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 119/215 (55%), Gaps = 49/215 (22%)
Query: 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111
+G +PT IQ+ CIP H G D+IG A+TG+GKTLAF LPI+QRL +
Sbjct: 1 MGIVQPTEIQERCIPPLLH-GHDVIGRAQTGTGKTLAFVLPILQRLRPD----------- 48
Query: 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV-AKGINVRVVPIVGGMSTEKQERLL 170
+G ++ALI+ PTRELALQ+T +K+V A + RV+ + GG EKQ R L
Sbjct: 49 ---------QGEVQALIVAPTRELALQITAEIKKVTADSEDCRVLAVYGGQDVEKQMRQL 99
Query: 171 KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230
K + +LVVGTPGRL + + G + L LS VLDEAD+M+ G E+++I+D P
Sbjct: 100 KNQVQLVVGTPGRLLDHLRRG---TLNLGRLSMLVLDEADQMLHIGFLNEVEAILDATPS 156
Query: 231 TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ RQT++FSAT+
Sbjct: 157 S------------------------RQTMLFSATM 167
>gi|288818118|ref|YP_003432466.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6]
gi|384128882|ref|YP_005511495.1| DEAD/DEAH box helicase [Hydrogenobacter thermophilus TK-6]
gi|288787518|dbj|BAI69265.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6]
gi|308751719|gb|ADO45202.1| DEAD/DEAH box helicase domain protein [Hydrogenobacter thermophilus
TK-6]
Length = 365
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 124/231 (53%), Gaps = 50/231 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+N +L +L K+I LG++EPTPIQK IP A +G DI+G A TG+GKT AFG+PI+
Sbjct: 3 FNFQQLSEILQKAIRDLGYEEPTPIQKEAIPLAL-KGYDIMGQAATGTGKTAAFGIPIV- 60
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK + L+AL++TPTRELALQV + L ++K ++V
Sbjct: 61 --------------------EKISKDDGLKALVLTPTRELALQVKEQLYALSKYKALKVF 100
Query: 156 PIVGGMSTEKQERLL-KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
GG + LL K P +V+GTPGR+ +L+S G ++ L +SF VLDEAD M++
Sbjct: 101 VFYGGTPVRRDLELLSKVVPNIVIGTPGRIKDLLSRG---VLNLGGVSFLVLDEADLMLD 157
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++SII P K RQT +FSATI
Sbjct: 158 MGFVEDIESIIAYTP------------------------KDRQTFLFSATI 184
>gi|212690559|ref|ZP_03298687.1| hypothetical protein BACDOR_00044 [Bacteroides dorei DSM 17855]
gi|212666908|gb|EEB27480.1| DEAD/DEAH box helicase [Bacteroides dorei DSM 17855]
Length = 434
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K++ + G+ PTPIQ+ IP +GKD++G A+TG+GKT AF +P++Q
Sbjct: 3 FKELDLIEPILKALQQTGYTTPTPIQEQAIPVLL-KGKDLLGCAQTGTGKTAAFAIPLIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL + K G ++ALI+TPTRELA+Q+ ++ + AK V+
Sbjct: 62 RLYQSDHKKG------------------IKALILTPTRELAIQIGENFDQYAKYTGVKHA 103
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ + Q LK ++++ TPGRL +L S G + L L +FVLDEADRM++
Sbjct: 104 VIFGGVPQKAQVDALKRGVQVLIATPGRLLDLQSQG---CISLKGLEYFVLDEADRMLDM 160
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ ++ ++P +RQTL FSAT+
Sbjct: 161 GFIHDIKKVLKLIPA------------------------RRQTLFFSATM 186
>gi|442755009|gb|JAA69664.1| Putative atp-dependent rna helicase [Ixodes ricinus]
Length = 291
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 109/185 (58%), Gaps = 24/185 (12%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L+L ++ + LG K+P+P+Q+ CIP+ +GKD IG A+TGSGKTLAF LPI+Q
Sbjct: 16 FEDLQLKKWIIDQLNSLGIKKPSPVQQNCIPSIL-KGKDCIGCAKTGSGKTLAFALPILQ 74
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L E+ P G + AL++TPTRELA Q+++ K + K + ++
Sbjct: 75 KLFED-------------------PYG-IFALVLTPTRELAFQISEQFKVIGKAVGLKDC 114
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
IVGGM Q RLL P +VV TPGRL + + L + F VLDEADR++E
Sbjct: 115 VIVGGMDMVTQGRLLAESPHVVVSTPGRLADHLESCNT--FTLGRIKFLVLDEADRLLE- 171
Query: 216 GHFRE 220
GHF E
Sbjct: 172 GHFNE 176
>gi|403238270|ref|ZP_10916856.1| DEAD/DEAH box helicase domain-containing protein [Bacillus sp.
10403023]
Length = 496
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 128/231 (55%), Gaps = 48/231 (20%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
A+NEL + LMKSI ++GF+E TPIQ IP A +G D+IG A+TG+GKT AFG+P++
Sbjct: 3 AFNELGISQDLMKSISKMGFEEATPIQSQTIPLAL-EGHDVIGQAQTGTGKTAAFGIPLI 61
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ + + E +++ ++I PTRELA+QV++ L ++ VR+
Sbjct: 62 ENVDVKDE--------------------NIQGIVIAPTRELAIQVSEELHKIGHFNRVRI 101
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+PI GG +Q R LK P ++VGTPGR+ + ++ + ++L + VLDEAD M+
Sbjct: 102 LPIYGGQDISRQIRSLKKHPHIIVGTPGRVIDHIN---RKTLKLQNVKTVVLDEADEMLN 158
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P +RQTL+FSAT+
Sbjct: 159 MGFIEDIEAILKGVP------------------------DERQTLLFSATM 185
>gi|258563228|ref|XP_002582359.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
gi|237907866|gb|EEP82267.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
Length = 836
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 127/254 (50%), Gaps = 48/254 (18%)
Query: 19 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
A EE ++ E S+ + L +++ + +GF PTPIQ+ IP GKD++G
Sbjct: 297 APEENTTDPEGSSSSSTFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLL-GKDLVGG 355
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELA 136
A TGSGKT AF +PI++RLL Y P+ R +I+ PTRELA
Sbjct: 356 AVTGSGKTAAFIIPILERLL-------------------YRPRKVPTSRVVILMPTRELA 396
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
+Q + ++A ++ +VGG S +QE +LK RP++++ TPGR + M V
Sbjct: 397 VQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRNSASFTV 456
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
+ TL VLDEADRM+E+G EL I+ +P K R
Sbjct: 457 D--TLEILVLDEADRMLEDGFADELNEILTTIP------------------------KSR 490
Query: 257 QTLVFSATIALSAD 270
QT++FSAT+ S D
Sbjct: 491 QTMLFSATMTDSVD 504
>gi|390933807|ref|YP_006391312.1| DEAD/DEAH box helicase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389569308|gb|AFK85713.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 513
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 130/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L+ ++K+I +GF+EP+ IQ IP +G D+IG AETG+GKTLA+G PI+
Sbjct: 3 FKELNLNEKILKAIDDMGFEEPSKIQSEVIPVLL-EGLDVIGQAETGTGKTLAYGAPIIN 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ G + LI+TPTRELA+QV D L + K VR++
Sbjct: 62 NF--------------------SSNDGKVFCLILTPTRELAIQVNDELARIGKYSKVRLL 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG+ ++Q + +K ++VVGTPGR+ +L+ ++++++L ++ + V+DEAD M++
Sbjct: 102 PVYGGVQIDRQIKAIKRGVDIVVGTPGRVLDLI---KRNVLDLKSVRYLVIDEADEMLDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II N +N ++RQT++FSAT+
Sbjct: 159 GFIDDIKEII------NHTN------------------RERQTMMFSATM 184
>gi|265754229|ref|ZP_06089418.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA]
gi|423241599|ref|ZP_17222711.1| hypothetical protein HMPREF1065_03334 [Bacteroides dorei
CL03T12C01]
gi|263234938|gb|EEZ20493.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA]
gi|392641052|gb|EIY34840.1| hypothetical protein HMPREF1065_03334 [Bacteroides dorei
CL03T12C01]
Length = 434
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K++ + G+ PTPIQ+ IP +GKD++G A+TG+GKT AF +P++Q
Sbjct: 3 FKELDLIEPILKALQQTGYTTPTPIQEQAIPVLL-KGKDLLGCAQTGTGKTAAFAIPLIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL + K G ++ALI+TPTRELA+Q+ ++ + AK V+
Sbjct: 62 RLYQSDHKKG------------------IKALILTPTRELAIQIGENFDQYAKYTGVKHA 103
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ + Q LK ++++ TPGRL +L S G + L L +FVLDEADRM++
Sbjct: 104 VIFGGVPQKAQVDALKRGVQVLIATPGRLLDLQSQG---CISLKGLEYFVLDEADRMLDM 160
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ ++ ++P +RQTL FSAT+
Sbjct: 161 GFIHDIKKVLKLIPA------------------------RRQTLFFSATM 186
>gi|113969505|ref|YP_733298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113884189|gb|ABI38241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 409
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 130/231 (56%), Gaps = 42/231 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L LH L+ ++ LG+++PTPIQ IPA + +D++ A+TG+GKT AF LP++
Sbjct: 2 SFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILAK-QDVMAGAQTGTGKTAAFALPVL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q+LL L+ + ++A K +RAL++ PTRELA+QV + AKG ++R+
Sbjct: 61 QQLL---------LDNQSQDAPK-----DIRALVLVPTRELAVQVQQSFGKYAKGTDIRI 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
GG+S E Q+ KA ++++ TPGRL + + G + L LS V DEADRM++
Sbjct: 107 GIAYGGVSIEAQQAEFKAGIDVLIATPGRLLDHLRQGA---LNLKHLSVLVFDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G E+++++ +P +RQTL+FSAT+
Sbjct: 164 MGFMDEIKAVLKQVPA------------------------QRQTLLFSATL 190
>gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior]
Length = 448
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 134/261 (51%), Gaps = 50/261 (19%)
Query: 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
E+ V + + + E W +L L +L K+ L +KEPT IQ+ IP QGKD+IG AE
Sbjct: 5 EKSVEDTKDNVEKITWKDLGLVDILCKTCLDLKWKEPTRIQQEAIPLTL-QGKDVIGLAE 63
Query: 81 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVT 140
TGSGKT AF LPI+Q LLE P+ + ALI+TPTRELA Q++
Sbjct: 64 TGSGKTAAFALPILQALLEN-------------------PQRYF-ALILTPTRELAFQIS 103
Query: 141 DHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 200
+ + I V+ V +VGGM Q +L+ +P +++ TPGRL + + + L
Sbjct: 104 EQFDALGSSIGVKTVVLVGGMDMHAQGMILEKKPHIIIATPGRLVDHLENTKGF--NLRQ 161
Query: 201 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLV 260
L F V+DEADR++ E+ I+ ++P ++R+TL+
Sbjct: 162 LKFLVMDEADRILNMDFEVEVDKILRVIP------------------------RERRTLL 197
Query: 261 FSATIALSADFRKKLKHGSLK 281
FSAT+ +KL+ SL+
Sbjct: 198 FSATMTKKV---QKLQRASLR 215
>gi|421861510|ref|ZP_16293512.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
gi|410828936|dbj|GAC43949.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
Length = 517
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 139/254 (54%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+++I LGF+E TPIQ+ IP A G+D+IG A+TG+GKT AFG+P++
Sbjct: 7 FVELGLEPKLLQAITELGFEEATPIQEIAIPVAM-MGRDLIGQAQTGTGKTAAFGIPLIS 65
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ E+ + AL++TPTRELA+QV + + ++ + VR +
Sbjct: 66 KIDPSEER--------------------VVALVMTPTRELAIQVAEEIGKLTRFKGVRSL 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P++++GTPGRL + ++ + + L+ + VLDEAD M++
Sbjct: 106 PIYGGQDIGRQIRALKKHPQIIIGTPGRLLDHIN---RKTIRLNDVQTVVLDEADEMLDM 162
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++ SI+ ++P ++RQT++FSAT+ L+
Sbjct: 163 GFMEDITSILSLVP------------------------EERQTMLFSATMPPNIQKLANQ 198
Query: 271 FRKKLKHGSLKLKQ 284
F + +H S+ KQ
Sbjct: 199 FLRDPEHVSVIPKQ 212
>gi|354547460|emb|CCE44195.1| hypothetical protein CPAR2_504190 [Candida parapsilosis]
Length = 604
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 130/239 (54%), Gaps = 49/239 (20%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
E ST F EL+L ++KSI L F PTPIQ + IP A GKDI+ A+TGSGKT
Sbjct: 122 ETSTTF---QELQLSRPILKSIQSLSFTSPTPIQSSTIPIALL-GKDIVAGAQTGSGKTA 177
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
A+ +P+++RL+ + +A+I+TPTRELA+QV D K++
Sbjct: 178 AYLIPLIERLI-------------------FKNATSTKAIILTPTRELAIQVYDVGKKLG 218
Query: 148 KGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
+ + N+ VGG++ +QE+ LK+RP++V+ TPGRL + + VE + V+
Sbjct: 219 QFVKNLSFGLAVGGLNLRQQEQQLKSRPDIVIATPGRLIDHIRNSPSFSVE--DVQVLVI 276
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
DEADRM+E G EL I+ ++P ++KRQTL+FSAT+
Sbjct: 277 DEADRMLEEGFQEELTEILSLIP-----------------------KQKRQTLLFSATM 312
>gi|357495749|ref|XP_003618163.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355493178|gb|AES74381.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 666
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 133/239 (55%), Gaps = 23/239 (9%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
++I +W E +L ++K++ + G+K P+PIQ A IP Q +D+IG AETGSGKT
Sbjct: 241 SKIPRPIRSWVESKLSQEILKAVEKAGYKTPSPIQMASIPLGLQQ-RDVIGVAETGSGKT 299
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF LP++ + L EE E P A+++ PTRELA Q+ D +
Sbjct: 300 AAFVLPMLSYITR--------LPPISEENEAEGPY----AVVMAPTRELAQQIEDETVKF 347
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
A+ + ++VV IVGG S E+Q ++ E+V+ TPGRL + + E+ L+ ++ VL
Sbjct: 348 AQYMGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCL---ERRYAVLNQCNYVVL 404
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
DEADRMI+ G ++ ++D +P +N E + E+ +R R T +FSAT+
Sbjct: 405 DEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDE-------KRIYRTTYMFSATM 456
>gi|118372814|ref|XP_001019601.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|89301368|gb|EAR99356.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 1093
Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats.
Identities = 77/189 (40%), Positives = 119/189 (62%), Gaps = 9/189 (4%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
+HP +++S+ F PT IQ A + D + A++TGSGKTL+FG+PI+ +L +
Sbjct: 15 IHPQVLQSLKDNNFNNPTEIQ-AYVLNTYRNYNDFLIASQTGSGKTLSFGIPIVSEILYD 73
Query: 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI--NVRVVPIV 158
+ A ++ ++ EKY +R LII PTREL LQ+ HL ++++ +R+ IV
Sbjct: 74 KSGAFAEKKKDQKKKEKY-----IRCLIIAPTRELVLQIEKHLNQISQNSKDQIRIGSIV 128
Query: 159 GGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE-LHTLSFFVLDEADRMIENGH 217
GG+S EKQ R+L P++++ TPGRLW+++ E +E L+ L + VLDEADRM+E GH
Sbjct: 129 GGISKEKQRRILSYVPDILIATPGRLWDMIDNYEHECLEKLYMLDYLVLDEADRMVELGH 188
Query: 218 FRELQSIID 226
F EL I++
Sbjct: 189 FDELDKILE 197
>gi|358366223|dbj|GAA82844.1| dead box ATP-dependent rna helicase [Aspergillus kawachii IFO 4308]
Length = 1430
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 150/273 (54%), Gaps = 20/273 (7%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W E L LM+ I R+G+KEPTPIQ+A IP A Q +D+IG A TGSGKT AF LP++
Sbjct: 993 SWEESNLPKRLMELISRVGYKEPTPIQRAAIPIAM-QNRDLIGVAVTGSGKTAAFLLPLL 1051
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ E + +E E G A+++ PTRELA Q+ K+ + V
Sbjct: 1052 CYIAEL---------PRIDEFEWRKADGPY-AIVLAPTRELAQQIEIEAKKFTGPLGFNV 1101
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V IVGG S E+Q L+ E+++ TPGRL + + E+ ++ L + ++DEADRMI+
Sbjct: 1102 VSIVGGHSLEEQAYSLRDGAEIIIATPGRLVDCI---ERRMLVLSQCCYVIMDEADRMID 1158
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVT--VSSLQRKKRQTLVFSATIALSAD-- 270
G + I+D LP++N + + + ++ ++ + RQT++++AT+ + +
Sbjct: 1159 LGFEEPVNKILDALPVSNEKPDSEDAENPLAMSRHINQDHHRYRQTMMYTATMPTAVERI 1218
Query: 271 FRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA 303
RK L+ ++ S +++T+ +R M A
Sbjct: 1219 ARKYLRRPAIVTIGSAG--EAVDTVEQRVEMIA 1249
>gi|409083507|gb|EKM83864.1| hypothetical protein AGABI1DRAFT_117335, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 701
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 123/226 (54%), Gaps = 42/226 (18%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
LMK++ LGF +PTPIQ + IP A GKD++G A TGSGKT AF +P+++RLL
Sbjct: 205 LMKAVTNLGFNKPTPIQASTIPVAL-LGKDVVGNAVTGSGKTAAFMIPMIERLL------ 257
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
EKG++A +R L++ PTRELA+Q + +++ ++R+ +VGG+S +
Sbjct: 258 ---FREKGKKA------AAIRCLVLVPTRELAVQCYEVGTKLSIHTDIRLCLVVGGLSLK 308
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
QE L++RP++V+ TPGRL + + L L V+DEADR++ G EL I
Sbjct: 309 SQEADLRSRPDIVIATPGRLIDHIRNSAS--FSLDALDILVIDEADRILSEGFSDELTEI 366
Query: 225 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
I P + RQT++FSAT+ S D
Sbjct: 367 IKSCP------------------------RSRQTMLFSATMTDSVD 388
>gi|222149464|ref|YP_002550421.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
gi|221736447|gb|ACM37410.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
Length = 484
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 129/234 (55%), Gaps = 43/234 (18%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E ++NEL L P ++ ++ +LGF+ PTPIQ IP G+D+IG A+TG+GKT AFGL
Sbjct: 16 ELTSFNELGLSPTVVATLTQLGFETPTPIQAQGIPVVM-AGRDLIGLAQTGTGKTAAFGL 74
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
PI++ L+++ E+ R LI+ PTREL Q+ D+L+ +
Sbjct: 75 PIIELLMKD---------------ERRPDNRTTRTLILAPTRELVNQIGDNLRSFIRKTP 119
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+++ +VGG S KQ+ L+ +++V TPGRL +L+S ++ + L ++ VLDEAD+
Sbjct: 120 IKINQVVGGASINKQQLQLERGTDILVATPGRLLDLIS---RNAISLRAVTHLVLDEADQ 176
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
M++ G +L+ I M+P KRQTL+FSAT+
Sbjct: 177 MLDLGFIHDLRKIAKMVPA------------------------KRQTLLFSATM 206
>gi|345515892|ref|ZP_08795389.1| ATP-dependent RNA helicase DeaD [Bacteroides dorei 5_1_36/D4]
gi|229436523|gb|EEO46600.1| ATP-dependent RNA helicase DeaD [Bacteroides dorei 5_1_36/D4]
Length = 434
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K++ + G+ PTPIQ+ IP +GKD++G A+TG+GKT AF +P++Q
Sbjct: 3 FKELDLIEPILKALQQTGYTTPTPIQEQAIPVLL-KGKDLLGCAQTGTGKTAAFAIPLIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL + K G ++ALI+TPTRELA+Q+ ++ + AK V+
Sbjct: 62 RLYQSDHKKG------------------IKALILTPTRELAIQIGENFDQYAKYAGVKHA 103
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ + Q LK ++++ TPGRL +L S G + L L +FVLDEADRM++
Sbjct: 104 VIFGGVPQKAQVDALKRGVQVLIATPGRLLDLQSQG---CISLKGLEYFVLDEADRMLDM 160
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ ++ ++P +RQTL FSAT+
Sbjct: 161 GFIHDIKKVLKLIPA------------------------RRQTLFFSATM 186
>gi|189208750|ref|XP_001940708.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976801|gb|EDU43427.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 805
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 119/238 (50%), Gaps = 48/238 (20%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ + L +++ + +GF EPTPIQ +P A QGKD++G AETGSGKT AF +PI+
Sbjct: 276 SFQAMSLSRPILRGLASVGFTEPTPIQNKAVPIAM-QGKDVVGGAETGSGKTAAFLIPIL 334
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELALQVTDHLKEVAKGINV 152
+RLL Y PK R I PTRELA+Q + ++A ++
Sbjct: 335 ERLL-------------------YRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDI 375
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ GG ST QE +LK RP++V+ TPGR + M VE L VLDEADRM
Sbjct: 376 TFALMAGGFSTRDQEAVLKTRPDVVIATPGRFIDHMHNTAAFQVE--HLEILVLDEADRM 433
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
+E G +L I+ +P K RQT++FSAT+ S D
Sbjct: 434 LEEGFESQLNEILTTIP------------------------KSRQTMLFSATMTSSVD 467
>gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
43183]
gi|167700298|gb|EDS16877.1| DEAD/DEAH box helicase [Bacteroides stercoris ATCC 43183]
Length = 372
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 127/232 (54%), Gaps = 49/232 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L + ++K+I G+ PTPIQ IPAA GKDI+G A+TG+GKT AF +PI+Q
Sbjct: 3 FKDLNITEPILKAIEEKGYANPTPIQVKAIPAAL-TGKDILGCAQTGTGKTAAFAIPIIQ 61
Query: 96 RL--LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153
L L+ R+K+ ++ALI+TPTRELALQ+++ + + AK VR
Sbjct: 62 HLQVLKNRDKS-------------------IKALILTPTRELALQISECIDDYAKYTQVR 102
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
I GG++ Q +L +++V TPGRL +LM+ G H L + FVLDEADRM+
Sbjct: 103 HGVIFGGVNQRAQVNMLHKGVDILVATPGRLLDLMNQGYIH---LDNVRHFVLDEADRML 159
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G +++ ++ LP K++QTL FSAT+
Sbjct: 160 DMGFIHDIKRLLPKLP------------------------KEKQTLFFSATM 187
>gi|206579391|ref|YP_002239559.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae 342]
gi|290510541|ref|ZP_06549911.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
gi|206568449|gb|ACI10225.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
342]
gi|289777257|gb|EFD85255.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
Length = 451
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 133/232 (57%), Gaps = 42/232 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L+P +++++ G+ EPTPIQ+ IPA QG+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVM-QGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
QRL+++ A KG +RALI+TPTRELA QV +++++ +K +N+R
Sbjct: 61 QRLIDKEPHA------KGRRP--------VRALILTPTRELAAQVGENVRDYSKYLNIRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q L+ +++V TPGRL +L ++ V L ++ VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDILVATPGRLLDLE---HQNAVSLDSVEILVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +++ ++ LP +RQ L+FSAT +
Sbjct: 164 MGFIHDIRRVLAKLPA------------------------RRQNLLFSATFS 191
>gi|389574285|ref|ZP_10164350.1| ATP-dependent RNA helicase [Bacillus sp. M 2-6]
gi|388426047|gb|EIL83867.1| ATP-dependent RNA helicase [Bacillus sp. M 2-6]
Length = 516
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + +L LMK+I R+GF+E TPIQ IP Q KD+IG A+TG+GKT AFG+P+++
Sbjct: 22 FQDFQLSESLMKAINRMGFEEATPIQAETIPLGL-QNKDVIGQAQTGTGKTAAFGIPLVE 80
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + +P +++A+II PTRELA+QV++ L ++ + RV+
Sbjct: 81 KI------------------DPASP--NIQAIIIAPTRELAIQVSEELYKIGQDKRARVL 120
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGRL + ++ + + L + VLDEAD M+
Sbjct: 121 PIYGGQDIGRQIRSLKKNPHIIVGTPGRLLDHIN---RRTMRLQNVETVVLDEADEMLNM 177
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++SI+ +P + QTL+FSAT+
Sbjct: 178 GFIEDIESILSNVP------------------------SEHQTLLFSATM 203
>gi|374851362|dbj|BAL54324.1| DEAD/DEAH box helicase domain protein [uncultured Aquificae
bacterium]
Length = 365
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 123/231 (53%), Gaps = 50/231 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+N +L L K+I LG++EPTPIQK IP A +G DI+G A TG+GKT AFG+PI+
Sbjct: 3 FNFQQLSQALQKAIRDLGYEEPTPIQKEAIPLAL-KGYDIMGQAATGTGKTAAFGIPIV- 60
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
EK + L+AL++TPTRELALQV + L ++K ++V
Sbjct: 61 --------------------EKISKDDGLKALVLTPTRELALQVKEQLYALSKYKALKVF 100
Query: 156 PIVGGMSTEKQERLL-KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
GG + LL K P +V+GTPGR+ +L+S G ++ L +SF VLDEAD M++
Sbjct: 101 VFYGGTPVRRDLELLSKVVPNIVIGTPGRIKDLLSRG---VLNLGNVSFLVLDEADLMLD 157
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++SII P K RQT +FSATI
Sbjct: 158 MGFVEDIESIIAYTP------------------------KDRQTFLFSATI 184
>gi|327295054|ref|XP_003232222.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
gi|326465394|gb|EGD90847.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
Length = 813
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 130/255 (50%), Gaps = 49/255 (19%)
Query: 19 AEEELVSEAEISTEFDA-WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
A EE V+E + ++ A + L L +++ + +GF PTPIQ+ IP A GKD++G
Sbjct: 280 APEEQVTELKSTSRAPASFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALL-GKDVVG 338
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTREL 135
A TGSGKT AF +PI++RLL Y P+ R I+ PTREL
Sbjct: 339 GAVTGSGKTGAFIVPILERLL-------------------YRPRKVPTSRVAILMPTREL 379
Query: 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
A+Q + ++A ++ +VGG S +QE +LK RP++++ TPGR + M
Sbjct: 380 AVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFT 439
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK 255
V+ TL VLDEADRM+E+G EL I+ +P K
Sbjct: 440 VD--TLEILVLDEADRMLEDGFAEELNEILTTIP------------------------KS 473
Query: 256 RQTLVFSATIALSAD 270
RQT++FSAT+ S D
Sbjct: 474 RQTMLFSATMTSSVD 488
>gi|237833961|ref|XP_002366278.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|211963942|gb|EEA99137.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|221486500|gb|EEE24761.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
gi|221508269|gb|EEE33856.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
Length = 734
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 130/238 (54%), Gaps = 10/238 (4%)
Query: 39 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLL 98
+++HPLL++++ R+ + +PTPIQK IP G+D++ A+TGSGKT AF PI+ R+L
Sbjct: 235 MQIHPLLLQNVSRVNYTKPTPIQKNSIPTILS-GRDLMACAQTGSGKTAAFLYPIIARML 293
Query: 99 EEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIV 158
++ G + P + L+++PTRELA+Q+ + ++ G VR V +
Sbjct: 294 QDGPPPLPQAAAGGGSGYR-KPPAYPICLVLSPTRELAMQIYEEARKFQFGTGVRTVAVY 352
Query: 159 GGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 218
GG ++Q L ++ V TPGRL +L+ E+ V L + FFVLDEADRM++ G
Sbjct: 353 GGSDVKRQLIDLDGGCDICVATPGRLVDLL---ERRKVRLGLVQFFVLDEADRMLDMGFL 409
Query: 219 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSADF 271
+++ I++ + + + +R RQT++FSAT L+ DF
Sbjct: 410 PQIKLIVESFDLPPSPTPQTAGYPSLGGDSGAGRRVGRQTVMFSATFPREIQMLAKDF 467
>gi|427400760|ref|ZP_18891998.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
gi|425720273|gb|EKU83196.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
Length = 523
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 125/232 (53%), Gaps = 42/232 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + L P + +++ G+ PTPIQ IP QG+D++GAA+TG+GKT +F LPI+Q
Sbjct: 42 FADFGLAPEIQRALSDQGYVHPTPIQAQAIPVVL-QGRDVMGAAQTGTGKTASFSLPILQ 100
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRV 154
L+ + +P H +RAL++ PTRELA+QV D++K A+ +R
Sbjct: 101 LLMPHANAS-------------MSPARHPVRALVLVPTRELAVQVADNVKAYARHTPLRA 147
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GGM + Q +L+ E+V+ TPGRL + + E+ V L + V+DEADRM++
Sbjct: 148 TVVFGGMDMKPQTEILRRGVEIVIATPGRLLDHI---EQKNVSLGQVQMLVMDEADRMLD 204
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +LQ II++LP K+RQ L+FSAT +
Sbjct: 205 MGFLPDLQRIINLLP------------------------KQRQNLMFSATFS 232
>gi|418575592|ref|ZP_13139742.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325994|gb|EHY93122.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 487
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 123/214 (57%), Gaps = 48/214 (22%)
Query: 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111
+GF E TPIQK IP A +GKD++G A+TG+GKT AFG+P++
Sbjct: 1 MGFNEATPIQKESIPLAL-EGKDVLGQAQTGTGKTGAFGIPLI----------------- 42
Query: 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK 171
EK A + +++LI+ PTRELA+QV + LK AKG N++VV + GGM ++Q + LK
Sbjct: 43 ----EKVADQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALK 98
Query: 172 ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231
P++VVGTPGR+ + ++ ++HTL +LDEAD M+ G +++ I+D +P
Sbjct: 99 KGPQIVVGTPGRVIDHLNRRTLKTNDIHTL---ILDEADEMMNMGFIDDMKFIMDKIP-- 153
Query: 232 NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+EQ RQT++FSAT+
Sbjct: 154 -------AEQ--------------RQTMLFSATM 166
>gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 507
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 148/285 (51%), Gaps = 52/285 (18%)
Query: 18 DAEEELVSEAEIS--TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
D E++ + + E S E +++L +HP ++++ R+GFK+PT IQ+ IP A G+DI
Sbjct: 64 DEEDDGIDKVENSKLDENTTFDQLGMHPQIIEACVRMGFKKPTEIQRESIPHAI-AGRDI 122
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135
IG A+TGSGKT AF +PI+Q+LL+ + L ALI++PTREL
Sbjct: 123 IGLAQTGSGKTAAFAIPILQQLLQSPQP--------------------LFALILSPTREL 162
Query: 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR-LWELMSGGEKH 194
A Q++ + + I V+ +VGGM +Q +L +P ++VGTPGR ++ L + H
Sbjct: 163 AFQISQQFEALGAVIGVKCGVLVGGMDVMQQAMVLARKPHIIVGTPGRVMYHLENTKGFH 222
Query: 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 254
L L F V+DEADR++ E+ I+ ++P K
Sbjct: 223 ---LKALKFLVMDEADRLLSMDFEEEINKILKVIP------------------------K 255
Query: 255 KRQTLVFSATIALS-ADFRKKLKHGSLKLKQSVNGLNSIETLSER 298
R T +FSAT+ A +K +K++ + ++++TL ++
Sbjct: 256 NRNTYLFSATMTSKVAKLQKASLVNPIKVQVASTKYSTVDTLVQQ 300
>gi|374384807|ref|ZP_09642324.1| hypothetical protein HMPREF9449_00710 [Odoribacter laneus YIT
12061]
gi|373227611|gb|EHP49924.1| hypothetical protein HMPREF9449_00710 [Odoribacter laneus YIT
12061]
Length = 397
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 133/253 (52%), Gaps = 43/253 (16%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + L+K+I G+ PTPIQ IP A GKDI+G A+TG+GKT AF +PI+Q
Sbjct: 3 FKELNIADSLLKAISEKGYHCPTPIQIQGIPVAL-SGKDILGIAQTGTGKTAAFAIPILQ 61
Query: 96 RLLE---------EREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
L + + ++ ++ +KY K ++ALI+TPTRELALQ+ D +
Sbjct: 62 HLSQNNASFSVSQDTQEKKSFSRQENNPGKKYR-KREIQALILTPTRELALQIGDSFTDY 120
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
K +R I GG+ Q L+ +++V TPGRL +LM+ G V+L +L FVL
Sbjct: 121 GKYTGLRHCVIFGGIKQLVQTTALRRGVDILVATPGRLLDLMNQG---FVDLSSLKHFVL 177
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI- 265
DEADRM++ G +++ I+ LP + QTL+FSAT+
Sbjct: 178 DEADRMLDMGFINDIKRILLKLPA------------------------QHQTLLFSATMP 213
Query: 266 ----ALSADFRKK 274
ALSA KK
Sbjct: 214 QSIAALSASILKK 226
>gi|330915742|ref|XP_003297149.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
gi|311330325|gb|EFQ94748.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
Length = 805
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 119/238 (50%), Gaps = 48/238 (20%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ + L +++ + +GF EPTPIQ +P A QGKD++G AETGSGKT AF +PI+
Sbjct: 276 SFQAMSLSRPILRGLASVGFTEPTPIQNKAVPIAM-QGKDVVGGAETGSGKTAAFLIPIL 334
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELALQVTDHLKEVAKGINV 152
+RLL Y PK R I PTRELA+Q + ++A ++
Sbjct: 335 ERLL-------------------YRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDI 375
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ GG ST QE +LK RP++V+ TPGR + M VE L VLDEADRM
Sbjct: 376 TFALMAGGFSTRDQEAVLKTRPDVVIATPGRFIDHMHNTAAFQVE--HLEILVLDEADRM 433
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
+E G +L I+ +P K RQT++FSAT+ S D
Sbjct: 434 LEEGFESQLNEILTTIP------------------------KSRQTMLFSATMTSSVD 467
>gi|195028030|ref|XP_001986885.1| GH21617 [Drosophila grimshawi]
gi|193902885|gb|EDW01752.1| GH21617 [Drosophila grimshawi]
Length = 524
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 137/273 (50%), Gaps = 58/273 (21%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E +A+ +L L P L K + +LG K TPIQ+ CIPA GKD IGAA+TGSGKT AF L
Sbjct: 5 ETNAFLQLGLRPWLAKQLTKLGLKGATPIQENCIPAIL-SGKDCIGAAKTGSGKTFAFAL 63
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
PI++RL EE P H AL++TPT ELA Q+++ + +
Sbjct: 64 PILERLSEE-------------------PVSHF-ALVLTPTHELAYQISEQFLVAGQAMG 103
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
VRV + GG + + L RP +VV PGRL + ++G + L + V+DEADR
Sbjct: 104 VRVCVVSGGTDQMIESQKLMQRPHIVVAMPGRLADHLTGCDT--FSFDNLKYLVVDEADR 161
Query: 212 MIENGHFRELQSIID-MLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
M+ NG F E +II+ LP K RQ L FSAT+ D
Sbjct: 162 ML-NGDFDESLAIIERCLP------------------------KSRQNLFFSATM---KD 193
Query: 271 FRKK-----LKHGSLKLKQSVNGLNSIETLSER 298
F K+ + L+ Q + + +++TL +R
Sbjct: 194 FMKESSIFPIAKDCLEWSQD-SDVATVDTLDQR 225
>gi|302499800|ref|XP_003011895.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
gi|291175449|gb|EFE31255.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
Length = 814
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 131/255 (51%), Gaps = 49/255 (19%)
Query: 19 AEEELVSEAEISTEFDA-WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
A EE V+E++ ++ A + L L +++ + +GF PTPIQ+ IP A GKD++G
Sbjct: 281 APEEQVTESKSTSGAPASFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALL-GKDVVG 339
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTREL 135
A TGSGKT AF +PI++RLL Y P+ R I+ PTREL
Sbjct: 340 GAVTGSGKTGAFIVPILERLL-------------------YRPRKVPTSRVAILMPTREL 380
Query: 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
A+Q + ++A ++ +VGG S +QE +LK RP++++ TPGR + M
Sbjct: 381 AVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFT 440
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK 255
V+ TL VLDEADRM+E+G EL I+ +P K
Sbjct: 441 VD--TLEILVLDEADRMLEDGFAEELNEILTTIP------------------------KS 474
Query: 256 RQTLVFSATIALSAD 270
RQT++FSAT+ S D
Sbjct: 475 RQTMLFSATMTNSVD 489
>gi|288936404|ref|YP_003440463.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
gi|288891113|gb|ADC59431.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
Length = 451
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 133/232 (57%), Gaps = 42/232 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L+P +++++ G+ EPTPIQ+ IPA QG+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVM-QGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
QRL+++ A KG +RALI+TPTRELA QV +++++ +K +N+R
Sbjct: 61 QRLIDKEPHA------KGRRP--------VRALILTPTRELAAQVGENVRDYSKYLNIRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q L+ +++V TPGRL +L ++ V L ++ VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDILVATPGRLLDLE---HQNAVSLDSVEILVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +++ ++ LP +RQ L+FSAT +
Sbjct: 164 MGFIHDIRRVLAKLPA------------------------RRQNLLFSATFS 191
>gi|407980113|ref|ZP_11160911.1| ATP-dependent RNA helicase [Bacillus sp. HYC-10]
gi|407413167|gb|EKF34895.1| ATP-dependent RNA helicase [Bacillus sp. HYC-10]
Length = 496
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + +L LMK+I R+GF+E TPIQ IP Q KD+IG A+TG+GKT AFG+P+++
Sbjct: 5 FQDFQLSESLMKAINRMGFEEATPIQAETIPLGL-QNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + +P +++A+II PTRELA+QV++ L ++ + RV+
Sbjct: 64 KI------------------DPASP--NIQAIIIAPTRELAIQVSEELYKIGQDKRARVL 103
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGRL + ++ + + L + VLDEAD M+
Sbjct: 104 PIYGGQDIGRQIRSLKKNPHIIVGTPGRLLDHIN---RRTMRLQNVETVVLDEADEMLNM 160
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++SI+ +P + QTL+FSAT+
Sbjct: 161 GFIEDIESILSNVP------------------------SEHQTLLFSATM 186
>gi|399219035|emb|CCF75922.1| unnamed protein product [Babesia microti strain RI]
Length = 635
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 138/242 (57%), Gaps = 16/242 (6%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W+E +L L++++ G+ +PTPIQ IP A +D+IG AETGSGKT AF LP++
Sbjct: 225 SWDESKLPKELLEAVKVAGYNKPTPIQMQAIPIALEM-RDLIGIAETGSGKTAAFVLPML 283
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ K+ +L+++ + Y+ L++ P+RELA+Q+ D ++ A R
Sbjct: 284 AYV-----KSLPLLDDETGQDGPYS-------LVLAPSRELAIQIYDETRKFAAYCECRA 331
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ IVGG S E Q L+ E+++GTPGR+ + + ++ + L+ ++ +LDEADRM++
Sbjct: 332 IVIVGGRSVESQAFELRRGTEIIIGTPGRIKDCL---DRAYIVLNQCNYVILDEADRMVD 388
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274
G + I+D +P TN E + + + + R+ R T +FSAT+++ +K
Sbjct: 389 MGFEEVVNDILDKIPSTNLKAEDEDTAYEQELMSKAGHRRYRITQMFSATMSIDRLMKKY 448
Query: 275 LK 276
L+
Sbjct: 449 LR 450
>gi|392394099|ref|YP_006430701.1| DNA/RNA helicase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390525177|gb|AFM00908.1| DNA/RNA helicase, superfamily II [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 530
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 132/232 (56%), Gaps = 49/232 (21%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ E+ L ++++ +GF+EP+PIQKA IP A G D+IG A+TG+GKT AFG+PI
Sbjct: 8 SFGEISLSKQTLQALSEMGFEEPSPIQKAAIPVAI-DGVDLIGQAQTGTGKTAAFGIPI- 65
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVR 153
EK PK ++ALI+TPTRELA+QV++ + ++ K +V+
Sbjct: 66 --------------------CEKINPKFQAVQALILTPTRELAVQVSEEISKIGKYRHVK 105
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+PI GG S ++Q R L+ ++VVGTPGR+ + ++ G ++L + VLDEAD M+
Sbjct: 106 PLPIYGGQSIDRQIRALRFGSQVVVGTPGRILDHLNRGT---LKLQYVKMVVLDEADEML 162
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G ++++I+ +P R++RQ ++FSAT+
Sbjct: 163 DMGFVEDIETILKQVP-----------------------REERQVMLFSATM 191
>gi|422322840|ref|ZP_16403880.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
Length = 481
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 128/239 (53%), Gaps = 44/239 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++ LHPLL++SI G+ PTPIQ IP +G+D++GAA+TG+GKT AF LPI+
Sbjct: 20 FSDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVV-EGRDVMGAAQTGTGKTAAFTLPILH 78
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRV 154
RL+ + +P H +RALI+TPTRELA QV + +K +K +R
Sbjct: 79 RLMPLANTSA-------------SPARHPVRALILTPTRELADQVYESVKRYSKQTPLRS 125
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG+ Q+ L+ E++V TPGRL + + E+ V L + VLDEADRM++
Sbjct: 126 AVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHV---EQKNVNLSQVGILVLDEADRMLD 182
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
G +L+ II +LP +RQ L+FSAT S + RK
Sbjct: 183 MGFLPDLERIIRLLP------------------------AQRQGLLFSAT--FSNEIRK 215
>gi|81429227|ref|YP_396228.1| ATP-dependent RNA helicase [Lactobacillus sakei subsp. sakei 23K]
gi|78610870|emb|CAI55922.1| Putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
sakei 23K]
Length = 530
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L +MK+I R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLPI+Q
Sbjct: 3 FSELGLSEPIMKAISRAGFEEATPIQGETIPLAL-AGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L + ++ALII+PTRELA+Q + L + + +V
Sbjct: 62 NLDLDNP--------------------DIQALIISPTRELAIQTQEELYRLGRDRKAKVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK P+++VGTPGRL + ++ + V+L + VLDEAD M++
Sbjct: 102 VVYGGADIRRQIRSLKDHPQILVGTPGRLLDHIN---RRTVKLDHVKTLVLDEADEMLDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++SII +P +KRQTL+FSAT+
Sbjct: 159 GFVDDIESIIKQVP------------------------EKRQTLLFSATL 184
>gi|380448994|gb|AFD54569.1| vasa [Lepeophtheirus salmonis]
Length = 539
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 135/249 (54%), Gaps = 36/249 (14%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
D + ++ ++ + + ++EL L LL+++I G+K+PTPIQK IP + +DI+
Sbjct: 100 DSVQVDVKGTGDLPPKINCFSELNLRELLVRNIGLSGYKKPTPIQKTGIPLILAK-RDIM 158
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
++TGSGKT AF LPI+Q +L++ E + ++K LI+ PTRELA
Sbjct: 159 ACSQTGSGKTAAFLLPIIQFILQKGEFSSASSQQKPS------------CLIVAPTRELA 206
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
+Q+ D ++ +KG ++ V + GG S Q + ++++ TPGRL +L+S G V
Sbjct: 207 IQIKDEARKFSKGSMIKSVVLYGGTSVGYQCSQIVRGVDILIATPGRLLDLVSKGA---V 263
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
L + FFVLDEADRM++ G E++ I+ SE C T R
Sbjct: 264 SLDAVQFFVLDEADRMLDMGFLPEVKRIV-------------SEGNMCCKT-------SR 303
Query: 257 QTLVFSATI 265
QTL+FSAT
Sbjct: 304 QTLMFSATF 312
>gi|237707985|ref|ZP_04538466.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
gi|229457971|gb|EEO63692.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
Length = 434
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K++ + G+ PTPIQ+ IP +GKD++G A+TG+GKT AF +P++Q
Sbjct: 3 FKELDLIEPILKALQQTGYTTPTPIQEQAIPVLL-KGKDLLGCAQTGTGKTAAFAIPLIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL + K G ++ALI+TPTRELA+Q+ ++ + AK V+
Sbjct: 62 RLYQSDYKKG------------------IKALILTPTRELAIQIGENFDQYAKYTGVKHA 103
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ + Q LK ++++ TPGRL +L S G + L L +FVLDEADRM++
Sbjct: 104 VIFGGVPQKAQVDALKRGVQVLIATPGRLLDLQSQG---CISLKGLEYFVLDEADRMLDM 160
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ ++ ++P +RQTL FSAT+
Sbjct: 161 GFIHDIKKVLKLIPA------------------------RRQTLFFSATM 186
>gi|374583452|ref|ZP_09656546.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
gi|374419534|gb|EHQ91969.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
Length = 495
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 137/251 (54%), Gaps = 53/251 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L +M+SI +GF+E TP+Q+ IP A +G+D+IG A+TG+GKT A+G+P+++
Sbjct: 4 FTDLNLSESVMRSIINMGFEETTPVQEQTIPIAM-EGRDLIGQAQTGTGKTAAYGIPLVE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL+ + E H++ +++ PTRELA+QV + L ++ + + +
Sbjct: 63 RLVGQAE--------------------HIQGIVLAPTRELAVQVAEELNKIGQFKRIHAL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG + Q R LK RP ++V TPGRL + M + + L+ + VLDEAD M+
Sbjct: 103 PIYGGQGIDWQIRALKKRPHIIVATPGRLMDHM---RRKTIRLNDIKIVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI-----ALSAD 270
G ++++I+ +P ++RQTL+FSAT+ A++
Sbjct: 160 GFLDDIETILKEVP------------------------EERQTLLFSATMPRQIQAIAQR 195
Query: 271 FRKKLKHGSLK 281
F K+ + S+K
Sbjct: 196 FMKEPQLISIK 206
>gi|374336577|ref|YP_005093264.1| DEAD/DEAH box helicase [Oceanimonas sp. GK1]
gi|372986264|gb|AEY02514.1| DEAD/DEAH box helicase [Oceanimonas sp. GK1]
Length = 458
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 132/232 (56%), Gaps = 40/232 (17%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ L L+ L+++I+ G+ +PTPIQ+ IP +G D++ A+TG+GKT FGLP++
Sbjct: 2 SFASLGLNDNLVQAIHECGYTQPTPIQQQAIPLVL-KGGDLLAGAQTGTGKTAGFGLPML 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
QRL E + + A AP +RAL++TPTRELA QV ++L+ AK ++R
Sbjct: 61 QRLSETKARP---------LANGRAP---VRALVLTPTRELAAQVEENLRAYAKHTDLRT 108
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q + L + ++VV TPGRL + +S + ++L + VLDEADRM++
Sbjct: 109 LVMFGGVSINPQMKALGRKVDIVVATPGRLLDHVS---QRSIDLSRVEMLVLDEADRMLD 165
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G R+++ I+ +LP K+RQ L+FSAT +
Sbjct: 166 MGFIRDIRRILALLP------------------------KQRQNLLFSATFS 193
>gi|298674218|ref|YP_003725968.1| DEAD/DEAH box helicase [Methanohalobium evestigatum Z-7303]
gi|298287206|gb|ADI73172.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
Z-7303]
gi|452077305|gb|AGF93269.1| DEAD/DEAH box helicase domain-containing protein [uncultured
organism]
Length = 431
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 125/234 (53%), Gaps = 48/234 (20%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E +NEL L + K+I LG++EPTPIQ IP QG+D+IG A+TG+GKT AFG+
Sbjct: 2 EISTFNELNLSRDIEKAIEDLGYEEPTPIQARSIPYIM-QGRDVIGQAQTGTGKTAAFGI 60
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
P ++++ +K ++ +++ PTRELA QV D L ++A+
Sbjct: 61 PALEKVDRNSKK--------------------VQTIVLCPTRELANQVADELNKLARYKK 100
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
++V+PI GG E+Q + L ++V+GTPGR+ + M E+H + L + VLDEAD
Sbjct: 101 IKVLPIYGGQPIERQIKALNKGAQIVIGTPGRILDHM---ERHTLSLDNVKMTVLDEADE 157
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
M++ G +++ I+ LP KRQT +FSAT+
Sbjct: 158 MLDMGFREDIELILSKLP------------------------DKRQTTLFSATM 187
>gi|398343323|ref|ZP_10528026.1| DEAD/DEAH box helicase [Leptospira inadai serovar Lyme str. 10]
Length = 554
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 126/232 (54%), Gaps = 47/232 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L KSI + GF E TPIQ+ IP +GKDI G A+TG+GKT+AF +PI+
Sbjct: 3 FEELNLEPSLQKSIEKAGFVELTPIQEKAIPHGI-EGKDITGLAQTGTGKTVAFLVPIIH 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L + K + LI+ PTREL +Q+++ +++ K + RVV
Sbjct: 62 NILTKGIKG-------------------VSTLILAPTRELVIQISEEAEKLLKYTDYRVV 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI+GG + Q R L+A ++V TPGRL +L GG +L + FFVLDEADRM++
Sbjct: 103 PIIGGTDYKSQNRDLQALNGIIVATPGRLIDLARGG---TADLDKVEFFVLDEADRMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267
G +++ ++ C R ++QTL+FSAT+++
Sbjct: 160 GFINDIRWLL-----------------HKC-------RNRKQTLLFSATLSV 187
>gi|171913474|ref|ZP_02928944.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
4136]
Length = 452
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 126/231 (54%), Gaps = 43/231 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L LH ++K+I G+ EPTPIQ A IP G D+IG A+TG+GKT AF LP++
Sbjct: 3 FRALGLHENILKAIQEAGYSEPTPIQAAAIPQVV-AGHDMIGIAQTGTGKTAAFTLPMLH 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L + L +G P ++ALI+ PTREL Q+ D+++ AK + ++V
Sbjct: 62 LLAQ--------LHGQG-------PLRGIKALILAPTRELVAQIHDNVRAYAKHLPLKVA 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ Q L+A +LV+ TPGRL +LM G++H ++L F VLDEADRM++
Sbjct: 107 MIFGGVGERPQIEALRAGTDLVIATPGRLIDLM--GQRH-GNFNSLEFLVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G ++ I+ LP KKRQTL+FSAT++
Sbjct: 164 GFLPSIKRIVKALP------------------------KKRQTLLFSATLS 190
>gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
gi|416998583|ref|ZP_11939344.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella parvula
ACS-068-V-Sch12]
gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
2008]
gi|333977481|gb|EGL78339.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella parvula
ACS-068-V-Sch12]
Length = 515
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 125/233 (53%), Gaps = 48/233 (20%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
+ + +L + +++++ +GF+EPTPIQ+ IP A GKD+IG A+TG+GKT AFGLP
Sbjct: 2 LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAM-SGKDMIGQAQTGTGKTAAFGLP 60
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+++R+ G E H++ +I++PTRELA+QV + L ++A+ N+
Sbjct: 61 VLERV-------------DGNER-------HVQVVILSPTRELAIQVAEELNKMAQYTNI 100
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+PI GG +Q R LK P+++V TPGRL + M G H + + VLDEAD M
Sbjct: 101 TALPIYGGQDINRQFRALKKNPQIIVATPGRLMDHMDRGSIHFDHVKVV---VLDEADEM 157
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G ++ I+ +P + QTL+FSAT+
Sbjct: 158 LNMGFVDDINKILGAIP------------------------EDHQTLLFSATM 186
>gi|86134655|ref|ZP_01053237.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
gi|85821518|gb|EAQ42665.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
Length = 438
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 129/247 (52%), Gaps = 47/247 (19%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ L L +K++ G+ +P+PIQ+ IP +GKD++ +A+TG+GKT F LP++
Sbjct: 2 SFKSLGLSDAFVKAVEEKGYTKPSPIQEKAIPHIL-EGKDVLASAQTGTGKTAGFTLPVL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q L E + KY P +RAL++TPTRELA QV D+++E +K +N++
Sbjct: 61 QYLSETKH-------------PKYRP---IRALVLTPTRELAAQVHDNVREYSKYVNIKS 104
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG+ Q LK +++V TPGRL +L ++ V + F+LDEADRM++
Sbjct: 105 AVVFGGVKAASQIATLKRGVDILVATPGRLLDLH---DQKAVSFKRIDVFILDEADRMLD 161
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274
G R++ II +P KRQ L+FSAT + KK
Sbjct: 162 MGFVRDINKIISYMPA------------------------KRQNLMFSATFSKEI---KK 194
Query: 275 LKHGSLK 281
L G LK
Sbjct: 195 LASGILK 201
>gi|409099575|ref|ZP_11219599.1| DEAD/DEAH box helicase [Pedobacter agri PB92]
Length = 433
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 129/230 (56%), Gaps = 42/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L ++K++ + G+ +PTPIQ+ IP +GKD++G A+TG+GKT AF +P++Q
Sbjct: 3 FKELNLIEPILKALEKEGYTQPTPIQEQSIPTIL-KGKDLLGCAQTGTGKTAAFAIPMLQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
LL E+ K + +++AL++TPTRELA+Q+ + K +N+R +
Sbjct: 62 -LLHEKHINTKATK-------------NIKALVLTPTRELAIQIEESFKAYGSNLNLRHL 107
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG++ Q L+ +++V TPGRL +LM+ G + L+T+ FVLDEADRM++
Sbjct: 108 VIFGGVNQHSQVEALRKGVDILVATPGRLLDLMNQG---FITLNTIELFVLDEADRMLDM 164
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ ++ LP KRQTL FSAT+
Sbjct: 165 GFIHDVKRVVAKLPA------------------------KRQTLFFSATM 190
>gi|355683260|gb|AER97066.1| DEAD box polypeptide 24 [Mustela putorius furo]
Length = 702
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 110/209 (52%), Gaps = 21/209 (10%)
Query: 117 KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPEL 176
K PK L L++TPTRELA+QV H+ VAK ++ +VGGMS +KQ+R+L +PE+
Sbjct: 241 KAHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSAQKQQRMLNRQPEI 300
Query: 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNE 236
VV TPGRLWEL+ HL L L V+DEADRM+E GHF EL +++ML
Sbjct: 301 VVATPGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEML-------- 352
Query: 237 GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLS 296
S KRQTL+FSAT+ L ++ H K ++ L
Sbjct: 353 -----------SDSQYNPKRQTLIFSATLTLVHQAPARILHKKHIKKIDKTA--KLDLLV 399
Query: 297 ERAGMRANVAIVDLTNVSVLANKLEESFI 325
++ GMR ++DLT L E+ I
Sbjct: 400 QKIGMRGKPKVIDLTRNEATVETLTETKI 428
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
+ AW +L + +++++ LGF PTPIQ + A DI+GAAETGSGKTLAF +
Sbjct: 54 DVTAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 113
Query: 92 PIMQRLLEEREK 103
P++ +L+ + K
Sbjct: 114 PMIHAVLQWQMK 125
>gi|339998715|ref|YP_004729598.1| ATP-dependent RNA helicase rhlE [Salmonella bongori NCTC 12419]
gi|339512076|emb|CCC29797.1| putative ATP-dependent RNA helicase rhlE [Salmonella bongori NCTC
12419]
Length = 451
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 143/252 (56%), Gaps = 47/252 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L LHP ++++I G++EPTPIQ+ IPA +G+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLHPDILRAIAGQGYREPTPIQQQAIPAVL-EGRDLMASAQTGTGKTAGFSLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q L+ ++ A KG +RALI+TPTRELA Q+ +++++ ++ +N+R
Sbjct: 61 QHLITQQPHA------KGRRP--------VRALILTPTRELAAQIGENIRDYSQYLNIRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q L+ +++V TPGRL +L ++ V+L + VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLE---HQNAVKLDQVEILVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR-- 272
G +++ ++ LP KRQ L+FSAT S D +
Sbjct: 164 MGFIHDIRRVLAKLP------------------------PKRQNLLFSAT--FSDDIKAL 197
Query: 273 -KKLKHGSLKLK 283
+KL H L+++
Sbjct: 198 AEKLLHNPLEIE 209
>gi|315043240|ref|XP_003170996.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
gi|311344785|gb|EFR03988.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
Length = 814
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 130/255 (50%), Gaps = 49/255 (19%)
Query: 19 AEEELVSEAEISTEFDA-WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
A EE V+E + ++ A + L L +++ + +GF PTPIQK IP A GKD++G
Sbjct: 283 APEEQVAEPKSASGAPASFQNLSLSRPILRGLASVGFSAPTPIQKKTIPVALL-GKDVVG 341
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTREL 135
A TGSGKT AF +PI++RLL Y P+ R I+ PTREL
Sbjct: 342 GAVTGSGKTGAFIVPILERLL-------------------YRPRKVPTSRVAILMPTREL 382
Query: 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
A+Q + ++A ++ +VGG S +QE +LK RP++++ TPGR + M
Sbjct: 383 AVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFT 442
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK 255
V+ TL VLDEADRM+E+G EL I+ +P K
Sbjct: 443 VD--TLEILVLDEADRMLEDGFAEELNEILTTIP------------------------KS 476
Query: 256 RQTLVFSATIALSAD 270
RQT++FSAT+ S D
Sbjct: 477 RQTMLFSATMTNSVD 491
>gi|120599766|ref|YP_964340.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|120559859|gb|ABM25786.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
Length = 433
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 123/231 (53%), Gaps = 43/231 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ P ++++I G+++ TPIQ+ IPA +G+D++ +A+TG+GKT AF LPI+Q
Sbjct: 3 FESFSFSPEILRAISDCGYQQMTPIQQQAIPAI-RRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
KM+E+ E K + R LI+TPTRELA QV D++ K +N V+
Sbjct: 62 ----------KMVEKPSETL-----KSNTRVLILTPTRELAAQVADNVTAYCKYLNFSVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ E Q + LK +++V TPGRL E ++ V L + F VLDEADRM++
Sbjct: 107 TIYGGVKIETQAQKLKRGADVIVATPGRLLEHLTACN---VSLSNVDFLVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G ++Q I+ + KKRQ L+FSAT +
Sbjct: 164 GFSADIQKILQAV------------------------NKKRQNLLFSATFS 190
>gi|146292298|ref|YP_001182722.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|386312973|ref|YP_006009138.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|145563988|gb|ABP74923.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
gi|319425598|gb|ADV53672.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 433
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 123/231 (53%), Gaps = 43/231 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ P ++++I G+++ TPIQ+ IPA +G+D++ +A+TG+GKT AF LPI+Q
Sbjct: 3 FESFSFSPEILRAISDCGYQQMTPIQQQAIPAI-RRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
KM+E+ E K + R LI+TPTRELA QV D++ K +N V+
Sbjct: 62 ----------KMVEKPSETL-----KSNARVLILTPTRELAAQVADNVTAYCKYLNFSVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ E Q + LK +++V TPGRL E ++ V L + F VLDEADRM++
Sbjct: 107 TIYGGVKIETQAQKLKRGADVIVATPGRLLEHLTACN---VSLSNVDFLVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G ++Q I+ + KKRQ L+FSAT +
Sbjct: 164 GFSADIQKILQAV------------------------NKKRQNLLFSATFS 190
>gi|402591380|gb|EJW85309.1| hypothetical protein WUBG_03780, partial [Wuchereria bancrofti]
Length = 676
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 134/232 (57%), Gaps = 16/232 (6%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L + I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKT AF +P++
Sbjct: 308 WEEAGLPSEVFDVIMKIGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAAFLIPLLV 366
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ + + G + + P A+I+ PTRELA Q+ + + + + +R V
Sbjct: 367 WITS-------IPKFHGNDEQDTGPY----AIIMAPTRELAQQIEEETVKFGQLLGIRTV 415
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
++GG S E+Q L+ E+V+ TPGRL +++ E + L ++ +LDEADRM++
Sbjct: 416 SVIGGASREEQGLKLRLGVEVVIATPGRLLDVL---ENRYLSLDQCTYVILDEADRMLDM 472
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATIA 266
G E+Q +++ +P+TN + + + + + + +KK RQT++F+AT++
Sbjct: 473 GFEPEVQKVLEYIPVTNLKPDTEDAEKEESIMENFFSKKKYRQTVMFTATMS 524
>gi|392542118|ref|ZP_10289255.1| ATP-dependent RNA helicase [Pseudoalteromonas piscicida JCM 20779]
Length = 411
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 129/230 (56%), Gaps = 44/230 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL+LHP L+ +I LGF+ PTPIQ+ IP G D+I +A+TG+GKT AF LPI+
Sbjct: 3 FSELQLHPELLSAITELGFESPTPIQEKSIPLLL-SGFDLIASAQTGTGKTAAFMLPILH 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L M +GE++ +RALI+TPTRELA QV +H +++ ++ VV
Sbjct: 62 SML--------MGGTQGEKS--------VRALILTPTRELAQQVAEHTEKLVVNTSLNVV 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG + QE+ L+A ++VV TPGRL + + G + L + V DEADRM++
Sbjct: 106 CLYGGANIGPQEKRLRAGVDVVVATPGRLLDHLIKGT---LTLKNIQHLVFDEADRMLDM 162
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G E++ I+ +P+ KRQTL+FSAT+
Sbjct: 163 GFMGEIKRIMRTMPL------------------------KRQTLLFSATV 188
>gi|24374899|ref|NP_718942.1| ATP-dependent RNA helicase DEAD box family [Shewanella oneidensis
MR-1]
gi|24349603|gb|AAN56386.1| ATP-dependent RNA helicase DEAD box family [Shewanella oneidensis
MR-1]
Length = 409
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 130/231 (56%), Gaps = 42/231 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L+ L+ ++ LG+++PTPIQ IPA + +D++ A+TG+GKT AF LPI+
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTK-QDVMAGAQTGTGKTAAFALPIL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q L M + + + A K +RAL++ PTRELALQV + AKG ++RV
Sbjct: 61 QLL---------MADNQSDHAAK-----AIRALVLVPTRELALQVQQSFVKYAKGTDIRV 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
GG+S E Q+ + A ++++ TPGRL + + G +L +L+TL F DEADRM++
Sbjct: 107 GIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVF---DEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G E+Q+++ +P +RQTL+FSAT+
Sbjct: 164 MGFMDEIQAVLKQVP------------------------AQRQTLLFSATL 190
>gi|384567061|ref|ZP_10014165.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
gi|384522915|gb|EIF00111.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
Length = 577
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 142/276 (51%), Gaps = 52/276 (18%)
Query: 18 DAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
DA E + A++ T A+ +L L P L+K++ LG++EPTPIQ+A IP +G D++G
Sbjct: 10 DAPEGAIDTADLGTAV-AFGDLGLRPELLKALSDLGYEEPTPIQRAAIPPLL-EGADVVG 67
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137
A TG+GKT AF LP++ R+ + ++G E AL++ PTRELA
Sbjct: 68 QAATGTGKTAAFSLPVLHRIADL---------DRGTEPS---------ALVLVPTRELAA 109
Query: 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
QV + + + VRVVP+ GG +Q R L++ ++VV TPGR + +S G ++
Sbjct: 110 QVCEAMYRYGHHLGVRVVPVYGGQPMGRQLRSLESGVDVVVATPGRALDHLSRGS---LD 166
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
L L VLDEAD M++ G ++ +I+D P RQ
Sbjct: 167 LSKLRMVVLDEADEMLDMGFAEDIDAILDRTP------------------------DDRQ 202
Query: 258 TLVFSATIA--LSADFRKKLKHGS---LKLKQSVNG 288
T++FSAT+ ++ R+ L+ L +S NG
Sbjct: 203 TMLFSATMPPRIAGMVRRYLREPRRIELSRAESTNG 238
>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
Length = 493
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 127/239 (53%), Gaps = 44/239 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + LHPLL++SI G+ PTPIQ IP +G+D++GAA+TG+GKT AF LPI+
Sbjct: 19 FTDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVV-EGRDVMGAAQTGTGKTAAFTLPILH 77
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRV 154
RL+ + +P H +RALI+TPTRELA QV + +K +K +R
Sbjct: 78 RLMPLANTSA-------------SPARHPVRALILTPTRELADQVYESVKRYSKQTPLRS 124
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG+ Q+ L+ E++V TPGRL + + E+ V L + VLDEADRM++
Sbjct: 125 AVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHV---EQKNVNLSQVGILVLDEADRMLD 181
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
G +L+ II +LP +RQ L+FSAT S + RK
Sbjct: 182 MGFLPDLERIIRLLPA------------------------QRQGLLFSAT--FSNEIRK 214
>gi|367014751|ref|XP_003681875.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
gi|359749536|emb|CCE92664.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
Length = 740
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 138/260 (53%), Gaps = 57/260 (21%)
Query: 17 DDAEEELV------SEAEISTE--FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA 68
+D+ EE+ +E+E +T+ + +N L L ++K + LG+ P+PIQ A IP A
Sbjct: 194 EDSPEEMAKFYAPEAESEQATKQVHNDFNSLSLSRPVLKGLGDLGYTRPSPIQSATIPIA 253
Query: 69 AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRA 126
GKDII A TGSGKT AF +PI++RLL Y P R
Sbjct: 254 L-LGKDIIAGAVTGSGKTAAFMIPIIERLL-------------------YKPAKIASTRV 293
Query: 127 LIITPTRELALQVTDHLKEVAKGINVRVVPI-VGGMSTEKQERLLKARPELVVGTPGRLW 185
+++TPTRELA+QV+D K++ K ++ + VGG++ +QE+ LKARP++VV TPGR
Sbjct: 294 IVLTPTRELAIQVSDVAKKLGKYVSGLTFGLAVGGLNLRQQEQSLKARPDIVVATPGRFI 353
Query: 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTC 245
+ + V+ ++ V+DEADRM+E G EL I+ +LP
Sbjct: 354 DHIRNSASFNVD--SVEVLVIDEADRMLEEGFQEELNEILSLLP---------------- 395
Query: 246 VTVSSLQRKKRQTLVFSATI 265
KRQTL+FSAT+
Sbjct: 396 --------SKRQTLLFSATM 407
>gi|339503881|ref|YP_004691301.1| ATP-dependent RNA helicase RhlE [Roseobacter litoralis Och 149]
gi|338757874|gb|AEI94338.1| putative ATP-dependent RNA helicase RhlE [Roseobacter litoralis Och
149]
Length = 433
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 130/235 (55%), Gaps = 46/235 (19%)
Query: 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
++F+ N L P L+ + R+G +PTPIQK IP A + G+D++G A+TG+GKT AFG
Sbjct: 2 SDFEMMN---LPPELVARLGRMGLNDPTPIQKQAIPHAMN-GRDVMGLAQTGTGKTAAFG 57
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150
+P++ +MLE G A K +R L++ PTRELA Q++ +L+ A+
Sbjct: 58 VPLV----------AQMLELDGRPAPK-----SVRGLVLAPTRELATQISVNLRSFAENT 102
Query: 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210
V+V +VGG S Q + L+ +L+V TPGRL +LM ++ V L F VLDEAD
Sbjct: 103 KVKVAMVVGGQSINNQIKRLERGVDLLVATPGRLLDLM---DRRAVRLDETVFLVLDEAD 159
Query: 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+M++ G +L+ I ++P K+RQT++FSAT+
Sbjct: 160 QMLDMGFIHDLRKIASVIP------------------------KERQTMLFSATM 190
>gi|365122316|ref|ZP_09339220.1| hypothetical protein HMPREF1033_02566 [Tannerella sp.
6_1_58FAA_CT1]
gi|363642816|gb|EHL82156.1| hypothetical protein HMPREF1033_02566 [Tannerella sp.
6_1_58FAA_CT1]
Length = 421
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 127/230 (55%), Gaps = 43/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L+L +++++ G+ PTPIQ IP GKD++G A+TG+GKT AF +PI+Q
Sbjct: 3 FENLKLTEPVLRALQDEGYITPTPIQAKAIPCVL-DGKDLLGCAQTGTGKTAAFSIPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
LL E G+ +RALI+TPTRELA Q+ D++ ++ ++
Sbjct: 62 NLLAEAGGNGRR---------------SVRALILTPTRELAAQIGDNINAYSRHTRLKHT 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S + Q L+ +++V TPGRL +L+S + +++L T+ FFVLDEADRM++
Sbjct: 107 VIFGGVSQKSQVEALRKGVDILVATPGRLLDLVS---QKIIDLQTIRFFVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ +LP +KRQ+L FSAT+
Sbjct: 164 GFIHDIKKILLLLP------------------------RKRQSLFFSATM 189
>gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
Length = 513
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + +L LMK+I R+GF+E TPIQ IP Q KD+IG A+TG+GKT AFG+P+++
Sbjct: 22 FQDFQLSESLMKAINRMGFEEATPIQAETIPLGL-QNKDVIGQAQTGTGKTAAFGIPLVE 80
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + +P +++A+II PTRELA+QV++ L ++ + RV+
Sbjct: 81 KI------------------DPASP--NIQAIIIAPTRELAIQVSEELYKIGQDKRARVL 120
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGRL + ++ + + L + VLDEAD M+
Sbjct: 121 PIYGGQDIGRQIRSLKKNPHIIVGTPGRLLDHIN---RRTMRLQNVETVVLDEADEMLNM 177
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++SI+ +P + QTL+FSAT+
Sbjct: 178 GFIEDIESILSNVP------------------------SEHQTLLFSATM 203
>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 504
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 131/250 (52%), Gaps = 45/250 (18%)
Query: 18 DAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
D + + V ++E + F+ + L +++++ G+ PTPIQ A IP QG+D++G
Sbjct: 3 DIQTDAVPDSEPALRFEDFG---LSAEILRALADQGYDHPTPIQAAAIPVVL-QGRDVMG 58
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELA 136
AA+TG+GKT F LPI+Q LL + +P H +RALI+TPTRELA
Sbjct: 59 AAQTGTGKTAGFSLPIIQLLL-------------ANASNSASPARHPVRALILTPTRELA 105
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
QV +++K + +R + GGM Q L+A E+V+ TPGRL + + ++ +
Sbjct: 106 DQVAENVKAYCRHTPLRSTVVFGGMDMAPQTAALRAGVEIVIATPGRLLDHV---QQKTL 162
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
L V+DEADRM++ G +LQ II++LP KKR
Sbjct: 163 NLSQTQILVMDEADRMLDMGFLPDLQRIINLLP------------------------KKR 198
Query: 257 QTLVFSATIA 266
Q L+FSAT +
Sbjct: 199 QNLMFSATFS 208
>gi|238018738|ref|ZP_04599164.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
gi|237865209|gb|EEP66499.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
Length = 521
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 125/233 (53%), Gaps = 48/233 (20%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
+ + +L + +++++ +GF+EPTPIQ+ IP A GKD+IG A+TG+GKT AFGLP
Sbjct: 2 LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAM-SGKDMIGQAQTGTGKTAAFGLP 60
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+++R+ G E H++ +I++PTRELA+QV + L ++A+ N+
Sbjct: 61 VLERV-------------DGNER-------HVQVVILSPTRELAIQVAEELNKMAQYTNI 100
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+PI GG +Q R LK P+++V TPGRL + M G H + + VLDEAD M
Sbjct: 101 TALPIYGGQDINRQFRALKKNPQIIVATPGRLMDHMDRGSIHFDHVKVV---VLDEADEM 157
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G ++ I+ +P + QTL+FSAT+
Sbjct: 158 LNMGFVDDINKILGAIP------------------------EDHQTLLFSATM 186
>gi|162146723|ref|YP_001601182.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl
5]
gi|161785298|emb|CAP54844.1| putative cold-shock DEAD box protein A [Gluconacetobacter
diazotrophicus PAl 5]
Length = 596
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 145/281 (51%), Gaps = 59/281 (20%)
Query: 42 HPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEER 101
HP + +++ G++EPTP+QKA + AA G+D++ +A+TGSGKT+AFGL + LL
Sbjct: 7 HPAIRRALDARGYEEPTPVQKAVLDVAA-DGRDLLVSAQTGSGKTVAFGLAMADTLLGG- 64
Query: 102 EKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGM 161
AE++ P G A+II PTRELA+QV L + R+V +GGM
Sbjct: 65 -------------AERFGPAGAPLAVIIAPTRELAMQVQRELSWLYAPAGARIVSCIGGM 111
Query: 162 STEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFREL 221
++ R L+ +VVGTPGRL + S G L EL + VLDEAD M++ G EL
Sbjct: 112 DARREARALEIGAHIVVGTPGRLCDHQSRGRLVLSELRVV---VLDEADEMLDLGFRDEL 168
Query: 222 QSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRKKLKHGSL 280
Q ++D +P T R+TL+FSATIA A ++ + +L
Sbjct: 169 QQLLDAMPDT------------------------RRTLLFSATIAKDIATLARRYQRDAL 204
Query: 281 KLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLE 321
+ I+TLS G R + D+T +V+A+ E
Sbjct: 205 R----------IDTLS---GARQH---ADITYRAVMADPRE 229
>gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
taxon 158 str. F0412]
Length = 523
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 125/233 (53%), Gaps = 48/233 (20%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
+ + +L + +++++ +GF+EPTPIQ+ IP A GKD+IG A+TG+GKT AFGLP
Sbjct: 2 LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAM-SGKDMIGQAQTGTGKTAAFGLP 60
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+++R+ G E H++ +I++PTRELA+QV + L ++A+ N+
Sbjct: 61 VLERV-------------DGNER-------HVQVVILSPTRELAIQVAEELNKMAQYTNI 100
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+PI GG +Q R LK P+++V TPGRL + M G H + + VLDEAD M
Sbjct: 101 TALPIYGGQDINRQFRALKKNPQIIVATPGRLMDHMDRGSIHFDHVKVV---VLDEADEM 157
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G ++ I+ +P + QTL+FSAT+
Sbjct: 158 LNMGFVDDINKILGAIP------------------------EDHQTLLFSATM 186
>gi|335998488|ref|ZP_08564399.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
gi|335348343|gb|EGM49849.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
Length = 506
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 128/233 (54%), Gaps = 48/233 (20%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
F +NEL L L+K+I R GF+E TPIQ+A IP G D+IG A+TG+GKT AFGLP
Sbjct: 9 FLKFNELGLEEDLLKAIKRSGFEEATPIQEATIPLVL-AGIDVIGQAQTGTGKTAAFGLP 67
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
I+Q + + E H++A++++PTRELA+Q + L + K
Sbjct: 68 ILQHVDVKEE--------------------HIQAIVVSPTRELAIQTQEELYRLGKDKRA 107
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+V + GG +Q +LLK P+++VGTPGRL + ++ + V+L + VLDEAD M
Sbjct: 108 KVQVVYGGADIRRQIKLLKHVPQILVGTPGRLLDHIN---RKTVDLSHVKTLVLDEADEM 164
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ G ++++II +P ++RQTL+FSAT+
Sbjct: 165 LDMGFLEDIEAIIKNVP------------------------EERQTLLFSATM 193
>gi|296114606|ref|ZP_06833259.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
ATCC 23769]
gi|295978962|gb|EFG85687.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
ATCC 23769]
Length = 593
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 129/242 (53%), Gaps = 43/242 (17%)
Query: 42 HPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEER 101
HP L +++ G++ PTP+Q A + AA G+D++ +A+TGSGKT+AFGL + LL
Sbjct: 7 HPALQRALDEQGYENPTPVQTAVLDVAA-DGRDLLVSAQTGSGKTVAFGLAMADTLLGGD 65
Query: 102 EKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGM 161
E+ G P G A+II PTRELA+QVT L + R+V +GGM
Sbjct: 66 ERLG--------------PAGAPLAVIIAPTRELAMQVTRELTWLYAAAGARIVSCIGGM 111
Query: 162 STEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFREL 221
++ R L+ +VVGTPGRL + +S G + +L + VLDEAD M++ G EL
Sbjct: 112 DARREARALQIGAHIVVGTPGRLCDHLSRGRLVMTDLRVV---VLDEADEMLDLGFRDEL 168
Query: 222 QSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRKKLKHGSL 280
+ ++D +P K R+TL+FSATIA A K+ +H +L
Sbjct: 169 EQLLDAMP------------------------KTRRTLLFSATIAREIASLAKRYQHDAL 204
Query: 281 KL 282
++
Sbjct: 205 RI 206
>gi|426201453|gb|EKV51376.1| hypothetical protein AGABI2DRAFT_114110 [Agaricus bisporus var.
bisporus H97]
Length = 754
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 123/226 (54%), Gaps = 42/226 (18%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
LMK++ LGF +PTPIQ + IP A GKD++G A TGSGKT AF +P+++RLL
Sbjct: 205 LMKAVTNLGFNKPTPIQASTIPVAL-LGKDVVGNAVTGSGKTAAFMIPMIERLL------ 257
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
EKG++A +R L++ PTRELA+Q + +++ ++R+ +VGG+S +
Sbjct: 258 ---FREKGKKA------AAIRCLVLVPTRELAVQCYEVGTKLSIHTDIRLCLVVGGLSLK 308
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
QE L++RP++V+ TPGRL + + L L V+DEADR++ G EL I
Sbjct: 309 SQEADLRSRPDIVIATPGRLIDHIRNSAS--FSLDALDILVIDEADRILSEGFSDELTEI 366
Query: 225 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
I P + RQT++FSAT+ S D
Sbjct: 367 IKSCP------------------------RSRQTMLFSATMTDSVD 388
>gi|323140806|ref|ZP_08075722.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium
succinatutens YIT 12067]
gi|322414722|gb|EFY05525.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium
succinatutens YIT 12067]
Length = 529
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 127/230 (55%), Gaps = 49/230 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L L ++ ++ +GF+EP+PIQ A IP +G D+IG A+TG+GKT AFG+P++Q
Sbjct: 8 FGSLELDKKIVTALTDMGFEEPSPIQAATIPLVL-EGNDVIGQAQTGTGKTAAFGIPLVQ 66
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ + + H++ALI+TPTRELA+QV + + ++ + VR +
Sbjct: 67 AITDFK---------------------HIQALIMTPTRELAIQVAEEVGKIGRTRRVRAL 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG E+Q R L+ ++V+GTPGRL + ++ G + L + F VLDEAD M++
Sbjct: 106 PVYGGQPIERQIRALRNNVQIVIGTPGRLIDHINRGT---IRLDHIKFLVLDEADEMLDM 162
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ LP+ +RQTL+FSAT+
Sbjct: 163 GFVDDIEEIMRSLPV------------------------ERQTLLFSATM 188
>gi|393775871|ref|ZP_10364176.1| atp-dependent rna helicase [Ralstonia sp. PBA]
gi|392717127|gb|EIZ04696.1| atp-dependent rna helicase [Ralstonia sp. PBA]
Length = 507
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 133/252 (52%), Gaps = 47/252 (18%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
+ A+ T FD++ LH ++++I G++ TPIQ IP QG+D++GAA+TG
Sbjct: 1 MTDTAQADTTFDSFG---LHADILRAITEQGYRVATPIQAQAIPVV-MQGRDVMGAAQTG 56
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTD 141
+GKT F LPI+QRLL + +P H +RAL++TPTRELA QV D
Sbjct: 57 TGKTAGFSLPIIQRLLPF-------------ASTSTSPARHPVRALMLTPTRELADQVYD 103
Query: 142 HLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
++ + AK +R + GG+ Q L+ E++V TPGRL + + ++ V L +
Sbjct: 104 NVAKYAKHTALRSTVVFGGVDMNPQTAELRRGVEILVATPGRLLDHV---QQKTVNLSQV 160
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
VLDEADRM++ G +LQ I+++LP +RQTL+F
Sbjct: 161 QMLVLDEADRMLDMGFLPDLQRILNLLP------------------------AQRQTLLF 196
Query: 262 SATIALSADFRK 273
SAT S D +K
Sbjct: 197 SAT--FSGDIKK 206
>gi|299822345|ref|ZP_07054231.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
gi|299815874|gb|EFI83112.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
Length = 512
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 130/230 (56%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++E L ++KS+ R+GF+E TPIQ+ IP GKD+IG A+TG+GKT AFGLPI+
Sbjct: 6 FSEFGLDEKVVKSVNRMGFEEATPIQEKTIPLGL-AGKDLIGQAQTGTGKTAAFGLPIIN 64
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ ++ +++ALII PTRELA+QV++ L +++ + RV+
Sbjct: 65 KIDQK--------------------NNNIQALIIAPTRELAIQVSEELYKLSYDKHARVL 104
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK P+++VGTPGR+ +L++ + +++L + VLDEAD M+
Sbjct: 105 AVYGGSDISRQIRSLKKNPQIIVGTPGRMLDLIN---RRVLKLENVETLVLDEADEMLNM 161
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P +RQTL+FSAT+
Sbjct: 162 GFIDDIEAILKSVP------------------------SERQTLLFSATM 187
>gi|336311025|ref|ZP_08565993.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
gi|335865440|gb|EGM70463.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
Length = 409
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 129/231 (55%), Gaps = 42/231 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++N L LH L+ ++ LG+++PTPIQ IP + +D++ A+TG+GKT AF LPI+
Sbjct: 2 SFNSLSLHSQLVNTLAELGYQQPTPIQVEAIPVILAK-QDLMAGAQTGTGKTAAFALPIL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
L+ A + EE AP+ H+RAL++ PTRELA+QV AKG ++R+
Sbjct: 61 HGLM-----AAPLTEE--------APR-HIRALVLVPTRELAVQVQQSFVNYAKGTDIRI 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
GG+S + Q + KA ++++ TPGRL + + G +L +L+ L F DEADRM++
Sbjct: 107 GIAYGGVSIDAQVEVFKAGIDVLIATPGRLLDHLRQGALNLKQLNVLVF---DEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G E+++++ +P KRQTL+FSAT+
Sbjct: 164 MGFMDEIKAVLKQVP------------------------AKRQTLLFSATL 190
>gi|343493741|ref|ZP_08732041.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
gi|342825883|gb|EGU60344.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
Length = 485
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 128/238 (53%), Gaps = 46/238 (19%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L P L+++I LG++ P+PIQ IP QG+D++ AA+TG+GKT F LP++
Sbjct: 2 SFSSLGLSPELLRAIEELGYETPSPIQAQAIPPVI-QGRDVMAAAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
QRL AG K A H+RAL++TPTRELA QV + + K +NV
Sbjct: 61 QRL------AGG----------KSAKSNHVRALVLTPTRELAAQVNGSVVKYGKYLNVNS 104
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG+ Q L+ +++V TPGRL +L +++ V+ L VLDEADRM++
Sbjct: 105 NVVFGGVKINPQMMKLRKGSDVLVATPGRLLDLY---QQNAVKFSQLEVLVLDEADRMLD 161
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272
G R+++ I+ +LP +KRQ L+FSAT S D R
Sbjct: 162 MGFIRDIKKILALLP------------------------EKRQNLLFSAT--FSDDIR 193
>gi|326473339|gb|EGD97348.1| ATP-dependent RNA helicase DRS1 [Trichophyton tonsurans CBS 112818]
Length = 700
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 131/255 (51%), Gaps = 49/255 (19%)
Query: 19 AEEELVSEAEISTEFDA-WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
A E+ V+E++ ++ A + L L +++ + +GF PTPIQ+ IP A GKD++G
Sbjct: 280 APEDQVTESKSTSGAPASFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALL-GKDVVG 338
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTREL 135
A TGSGKT AF +PI++RLL Y P+ R I+ PTREL
Sbjct: 339 GAVTGSGKTGAFIVPILERLL-------------------YRPRKVPTSRVAILMPTREL 379
Query: 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
A+Q + ++A ++ +VGG S +QE +LK RP++++ TPGR + M
Sbjct: 380 AVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFT 439
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK 255
V+ TL VLDEADRM+E+G EL I+ +P K
Sbjct: 440 VD--TLEILVLDEADRMLEDGFAEELNEILTTIP------------------------KS 473
Query: 256 RQTLVFSATIALSAD 270
RQT++FSAT+ S D
Sbjct: 474 RQTMLFSATMTNSVD 488
>gi|260584701|ref|ZP_05852447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
elegans ATCC 700633]
gi|260157724|gb|EEW92794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
elegans ATCC 700633]
Length = 509
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 131/252 (51%), Gaps = 55/252 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+NEL L L++SI ++GF+E TPIQ IP A GKD+IG A+TG+GKT +FGLP++Q
Sbjct: 3 FNELGLDSALLESIEKMGFEEATPIQSQTIPLAL-AGKDVIGQAQTGTGKTASFGLPMLQ 61
Query: 96 RL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
++ L R+ G L+I PTRELA+Q + L + K + V
Sbjct: 62 KINLRNRKVQG---------------------LVIAPTRELAIQTQEELYRLGKDKKIHV 100
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG +Q R LK +P +VVGTPGRL + +S + + L + VLDEAD M+
Sbjct: 101 QAVYGGADIGRQIRQLKDQPHIVVGTPGRLLDHIS---RKTLRLDNIETLVLDEADEMLN 157
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSA 269
G +++SII ++P + RQTL+FSAT+ +
Sbjct: 158 MGFLEDIESIIKLVP------------------------ENRQTLLFSATMPDDIKRIGV 193
Query: 270 DFRKKLKHGSLK 281
F K+ +H +K
Sbjct: 194 QFMKEPEHVRIK 205
>gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Bacillus pumilus ATCC 7061]
gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Bacillus pumilus ATCC 7061]
Length = 496
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + +L LMK+I R+GF+E TPIQ IP Q KD+IG A+TG+GKT AFG+P+++
Sbjct: 5 FQDFQLSESLMKAINRMGFEEATPIQAETIPLGL-QNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + +P +++A+II PTRELA+QV++ L ++ + RV+
Sbjct: 64 KI------------------DPASP--NIQAIIIAPTRELAIQVSEELYKIGQDKRARVL 103
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGRL + ++ + + L + VLDEAD M+
Sbjct: 104 PIYGGQDIGRQIRSLKKNPHIIVGTPGRLLDHIN---RRTMRLQNVETVVLDEADEMLNM 160
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++SI+ +P + QTL+FSAT+
Sbjct: 161 GFIEDIESILSNVP------------------------SEHQTLLFSATM 186
>gi|194758757|ref|XP_001961625.1| GF15062 [Drosophila ananassae]
gi|190615322|gb|EDV30846.1| GF15062 [Drosophila ananassae]
Length = 819
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 146/240 (60%), Gaps = 16/240 (6%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
+I +W+E ++ I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKT
Sbjct: 384 GKIPNPIRSWSESGFPREIIDIIDKVGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKT 442
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
LAF +P++ + + K+ E+ E+ ++ P A+I+ PTRELA Q+ + +
Sbjct: 443 LAFLIPLLSWI----QSLPKI--ERLEDVDQ-GP----YAIIMAPTRELAQQIEEETTKF 491
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
+ + +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ VL
Sbjct: 492 GQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVL 548
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATI 265
DEADRMI+ G ++Q I++ +P++N + + + + + + +KK RQT++F+AT+
Sbjct: 549 DEADRMIDMGFEPDVQKILEYMPVSNLKPDTEEAEDENKLMENFYTKKKYRQTVMFTATM 608
>gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
Zhang]
gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
Zhang]
Length = 502
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 124/233 (53%), Gaps = 48/233 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L+K+I + GF+E TPIQ IP GKD+IG A+TG+GKT AFGLPI+Q
Sbjct: 3 FKELGLDYDLLKAIAQSGFEEATPIQAETIPLVL-AGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ +KA + ++ AL+I+PTRELA+Q + L + + ++V
Sbjct: 62 NI----DKADRSIQ----------------ALVISPTRELAIQTQEELYRLGQDKKIKVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R L P++VVGTPGR+ + + +H ++L L VLDEAD M++
Sbjct: 102 AVYGGADIRRQIRQLSEHPQIVVGTPGRILDHIG---RHTLKLQNLKVLVLDEADEMLDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
G +++ I++ +P RQTL+FSATI S
Sbjct: 159 GFIDDIEKIVEQMPTA------------------------RQTLLFSATIPAS 187
>gi|323340095|ref|ZP_08080360.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
gi|323092472|gb|EFZ35079.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
Length = 506
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 128/233 (54%), Gaps = 48/233 (20%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
F +NEL L L+K+I R GF+E TPIQ+A IP G D+IG A+TG+GKT AFGLP
Sbjct: 9 FLKFNELGLEEDLLKAIKRSGFEEATPIQEATIPLVL-AGIDVIGQAQTGTGKTAAFGLP 67
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
I+Q + + E H++A++++PTRELA+Q + L + K
Sbjct: 68 ILQHVDVKEE--------------------HIQAIVVSPTRELAIQTQEELYRLGKDKRA 107
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+V + GG +Q +LLK P+++VGTPGRL + ++ + V+L + VLDEAD M
Sbjct: 108 KVQVVYGGADIRRQIKLLKHVPQILVGTPGRLLDHIN---RKTVDLSHVKTLVLDEADEM 164
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ G ++++II +P ++RQTL+FSAT+
Sbjct: 165 LDMGFLEDIEAIIKNVP------------------------EERQTLLFSATM 193
>gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|385821240|ref|YP_005857627.1| DEAD/DEAH box helicase [Lactobacillus casei LC2W]
gi|385824432|ref|YP_005860774.1| DEAD/DEAH box helicase [Lactobacillus casei BD-II]
gi|409998335|ref|YP_006752736.1| DEAD/DEAH box helicase [Lactobacillus casei W56]
gi|417981730|ref|ZP_12622394.1| cold-shock DEAD-box protein A [Lactobacillus casei 12A]
gi|417984551|ref|ZP_12625171.1| cold-shock DEAD-box protein A [Lactobacillus casei 21/1]
gi|417987806|ref|ZP_12628359.1| cold-shock DEAD-box protein A [Lactobacillus casei 32G]
gi|417997288|ref|ZP_12637547.1| cold-shock DEAD-box protein A [Lactobacillus casei M36]
gi|418000194|ref|ZP_12640390.1| cold-shock DEAD-box protein A [Lactobacillus casei T71499]
gi|418003339|ref|ZP_12643426.1| cold-shock DEAD-box protein A [Lactobacillus casei UCD174]
gi|418006207|ref|ZP_12646168.1| cold-shock DEAD-box protein A [Lactobacillus casei UW1]
gi|418008368|ref|ZP_12648235.1| cold-shock DEAD-box protein A [Lactobacillus casei UW4]
gi|418011933|ref|ZP_12651680.1| cold-shock DEAD-box protein A [Lactobacillus casei Lc-10]
gi|418013012|ref|ZP_12652674.1| cold-shock DEAD-box protein A [Lactobacillus casei Lpc-37]
gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W]
gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II]
gi|406359347|emb|CCK23617.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus casei W56]
gi|410521133|gb|EKP96098.1| cold-shock DEAD-box protein A [Lactobacillus casei 12A]
gi|410522198|gb|EKP97147.1| cold-shock DEAD-box protein A [Lactobacillus casei 32G]
gi|410525109|gb|EKQ00016.1| cold-shock DEAD-box protein A [Lactobacillus casei 21/1]
gi|410533048|gb|EKQ07736.1| cold-shock DEAD-box protein A [Lactobacillus casei M36]
gi|410537114|gb|EKQ11693.1| cold-shock DEAD-box protein A [Lactobacillus casei T71499]
gi|410542456|gb|EKQ16903.1| cold-shock DEAD-box protein A [Lactobacillus casei UCD174]
gi|410544369|gb|EKQ18698.1| cold-shock DEAD-box protein A [Lactobacillus casei UW1]
gi|410547046|gb|EKQ21289.1| cold-shock DEAD-box protein A [Lactobacillus casei UW4]
gi|410551341|gb|EKQ25407.1| cold-shock DEAD-box protein A [Lactobacillus casei Lc-10]
gi|410556209|gb|EKQ30122.1| cold-shock DEAD-box protein A [Lactobacillus casei Lpc-37]
Length = 502
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 124/233 (53%), Gaps = 48/233 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L+K+I + GF+E TPIQ IP GKD+IG A+TG+GKT AFGLPI+Q
Sbjct: 3 FKELGLDHDLLKAIAQSGFEEATPIQAETIPLVL-AGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ +KA + ++ AL+I+PTRELA+Q + L + + ++V
Sbjct: 62 NI----DKADRSIQ----------------ALVISPTRELAIQTQEELYRLGQDKKIKVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R L P++VVGTPGR+ + + +H ++L L VLDEAD M++
Sbjct: 102 AVYGGADIRRQIRQLSEHPQIVVGTPGRILDHIG---RHTLKLQNLKVLVLDEADEMLDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
G +++ I++ +P RQTL+FSATI S
Sbjct: 159 GFIDDIEKIVEQMPTA------------------------RQTLLFSATIPAS 187
>gi|333030556|ref|ZP_08458617.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
18011]
gi|332741153|gb|EGJ71635.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
18011]
Length = 378
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 130/234 (55%), Gaps = 39/234 (16%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+ EL + +++++ G+ PTPIQ +A +PA HQ DI+G A+TG+GKT AF +PI+
Sbjct: 3 FKELNIIEPILQALTEKGYSTPTPIQEQAILPAIDHQ--DILGLAQTGTGKTAAFSIPII 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q L L+ +E E+ K +RALI+TPTRELA+Q+ + LK+ + +++
Sbjct: 61 QHL---------HLDSLQKEGEEKIAKRAIRALILTPTRELAIQIGESLKDYTRYTDLQY 111
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
I GG+ Q LKA +++V TPGRL +LM G ++++ + FVLDEADRM++
Sbjct: 112 TVIFGGVKQGSQVNRLKAGVDILVATPGRLLDLMHQGH---IKINKVQHFVLDEADRMLD 168
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
G +++ ++ LP K RQTL FSAT+ S
Sbjct: 169 MGFIHDIKRLLPRLP------------------------KNRQTLFFSATMPRS 198
>gi|336386445|gb|EGO27591.1| hypothetical protein SERLADRAFT_360268 [Serpula lacrymans var.
lacrymans S7.9]
Length = 520
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 137/264 (51%), Gaps = 51/264 (19%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++++L + L+ ++ R+ + PT IQ ACIP G+D IG A+TGSGKT+AF LPI+
Sbjct: 79 SFDDLNISSPLLAALSRMSIRTPTEIQVACIPPLL-SGRDCIGNAKTGSGKTIAFALPIL 137
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q+L E+ P G + AL++TPTRELA Q++D + G+++R
Sbjct: 138 QKLSED-------------------PYG-IFALVLTPTRELAFQISDQFAVLGAGLSIRT 177
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELM--SGGEKHLVELHTLSFFVLDEADRM 212
IVGGM Q L RP +VV TPGR+ + + S GE L + F VLDEADR+
Sbjct: 178 AVIVGGMDMMTQALELDNRPHVVVATPGRIVDHLRSSSGE---WSLSRIKFLVLDEADRL 234
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272
+ EL + D+LP K+RQT +F+AT+ S D
Sbjct: 235 LTPTFSPELSYLFDVLP------------------------KERQTCLFTATLTPSIDKL 270
Query: 273 KKLKHGSLKLKQSVNGLNS-IETL 295
++ K K ++ +N+ IET+
Sbjct: 271 AEVPPRPGKQKPFIHRMNANIETV 294
>gi|324505355|gb|ADY42303.1| ATP-dependent RNA helicase DDX23 [Ascaris suum]
Length = 515
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 136/232 (58%), Gaps = 16/232 (6%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L ++ I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKT AF +P++
Sbjct: 87 WAEAGLPSEVLDVIIKIGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAAFLIPLLV 145
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ K+ + +++ YA +I+ PTRELA Q+ + + + + +R V
Sbjct: 146 WIT----SLPKIQSNEDQDSGPYA-------IIMAPTRELAQQIEEETVKFGQLLGIRTV 194
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
++GG S E+Q L+ E+V+ TPGRL +++ E + L ++ +LDEADRM++
Sbjct: 195 SVIGGASREEQGLKLRLGVEVVIATPGRLLDVL---ENRYLSLDQCTYVILDEADRMLDM 251
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK-RQTLVFSATIA 266
G E+Q +++ +P+TN + + + + + + +KK RQT++F+AT++
Sbjct: 252 GFEPEVQKVLEYIPVTNLKPDTEEAEKEESIMENFYSKKKYRQTVMFTATMS 303
>gi|170760570|ref|YP_001788120.1| DEAD/DEAH box helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A3 str. Loch Maree]
Length = 524
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 130/230 (56%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L L+ ++K+I +GF+ P+ IQ+ IP +G D+I A+TG+GKTLAFG P++
Sbjct: 6 FENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVL-EGADVIAQAQTGTGKTLAFGAPVIS 64
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L + +K G ++AL++TPTRELALQ+ D LK ++K +V+
Sbjct: 65 SLCDNEKKKG------------------VKALVLTPTRELALQIKDELKRLSKYSKTKVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S E+Q + +K+ ++VVGTPGR+ + ++ + ++L + F +LDEAD M+
Sbjct: 107 PVYGGESIERQIKDIKSGVDIVVGTPGRILDHIN---RRTLKLGGIDFLILDEADEMLNM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I++ P +++QT++FSAT+
Sbjct: 164 GFIEDIETIMESTP------------------------EEKQTMLFSATM 189
>gi|367007110|ref|XP_003688285.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
gi|357526593|emb|CCE65851.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
Length = 755
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 130/249 (52%), Gaps = 52/249 (20%)
Query: 20 EEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAA 79
EE ++ ++ T F N L L ++K + LG+ +P+PIQ A IP GKDII A
Sbjct: 209 EESKEAKKQVHTNF---NTLSLSRPVLKGLSDLGYTKPSPIQSATIPIGLL-GKDIIAGA 264
Query: 80 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK--GHLRALIITPTRELAL 137
TGSGKT AF +PI++RLL Y P R +++TPTRELA+
Sbjct: 265 VTGSGKTAAFMIPIIERLL-------------------YKPANIASTRVIVLTPTRELAI 305
Query: 138 QVTDHLKEVAKGINVRVVPI-VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
QV+D K + K +N + VGG++ +QE+ LK RP++V+ TPGR + + V
Sbjct: 306 QVSDVGKRIGKYVNGLTFGLAVGGLNLRQQEQELKTRPDVVIATPGRFIDHIRNSASFNV 365
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
+ ++ V+DEADRM+E+G EL I+ +LP KR
Sbjct: 366 D--SVEVLVIDEADRMLEDGFQEELNEIMSLLPT------------------------KR 399
Query: 257 QTLVFSATI 265
QTL+FSAT+
Sbjct: 400 QTLLFSATM 408
>gi|429740488|ref|ZP_19274173.1| DEAD/DEAH box helicase [Porphyromonas catoniae F0037]
gi|429160924|gb|EKY03368.1| DEAD/DEAH box helicase [Porphyromonas catoniae F0037]
Length = 612
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 125/222 (56%), Gaps = 38/222 (17%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
+ +++ LG+++P P+Q+A IP + +D+I A+TG+GKT AFGLP++Q +
Sbjct: 12 ICQAVAELGYEQPMPVQEAVIPHLLGEPQDLIALAQTGTGKTAAFGLPLLQNV------- 64
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMST 163
+ L+ E + GH RAL++ PTREL LQ++D L E +K + +VR++P+ GG S
Sbjct: 65 ARSLD---ESKTRTNASGHARALVLCPTRELCLQISDDLTEYSKYLPSVRILPVYGGSSI 121
Query: 164 EKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQS 223
E Q R L+ E++V TPGRL +LM G L E+ T+ VLDEAD M+ G LQ+
Sbjct: 122 EAQIRTLRRGVEVIVATPGRLIDLMERGVASLDEVQTV---VLDEADEMLNMGFTESLQT 178
Query: 224 IIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
I+ +P K+R L+FSAT+
Sbjct: 179 ILAQVP------------------------KERHLLLFSATM 196
>gi|405360716|ref|ZP_11025657.1| ATP-dependent RNA helicase RhlE [Chondromyces apiculatus DSM 436]
gi|397090405|gb|EJJ21269.1| ATP-dependent RNA helicase RhlE [Myxococcus sp. (contaminant ex DSM
436)]
Length = 503
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 123/232 (53%), Gaps = 47/232 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL+L L++++ G+ PTPIQ+ IP A GKD++G A+TG+GKT AF LPI+Q
Sbjct: 3 FDELQLQETLLRAVKAEGYTTPTPIQQKAIPHAL-AGKDVLGVAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH--LRALIITPTRELALQVTDHLKEVAKGINVR 153
RL + K P G +R L++TPTRELA QV + K + +R
Sbjct: 62 RL-----------------SAKAPPGGARPVRCLVLTPTRELAGQVGESFATYGKNLPLR 104
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
I GG+ Q + L+ +++V TPGRL +LM E+ V L +L FVLDEADRM+
Sbjct: 105 HTVIFGGVGQNPQVQALQRGVDVLVATPGRLLDLM---EQGCVSLRSLEVFVLDEADRML 161
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G +++ +I LP KRQTL FSAT+
Sbjct: 162 DMGFIHDVRRVIKALP------------------------SKRQTLFFSATL 189
>gi|336373626|gb|EGO01964.1| hypothetical protein SERLA73DRAFT_49383 [Serpula lacrymans var.
lacrymans S7.3]
Length = 474
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 137/264 (51%), Gaps = 51/264 (19%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++++L + L+ ++ R+ + PT IQ ACIP G+D IG A+TGSGKT+AF LPI+
Sbjct: 42 SFDDLNISSPLLAALSRMSIRTPTEIQVACIPPLL-SGRDCIGNAKTGSGKTIAFALPIL 100
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q+L E+ P G + AL++TPTRELA Q++D + G+++R
Sbjct: 101 QKLSED-------------------PYG-IFALVLTPTRELAFQISDQFAVLGAGLSIRT 140
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELM--SGGEKHLVELHTLSFFVLDEADRM 212
IVGGM Q L RP +VV TPGR+ + + S GE L + F VLDEADR+
Sbjct: 141 AVIVGGMDMMTQALELDNRPHVVVATPGRIVDHLRSSSGEW---SLSRIKFLVLDEADRL 197
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272
+ EL + D+LP K+RQT +F+AT+ S D
Sbjct: 198 LTPTFSPELSYLFDVLP------------------------KERQTCLFTATLTPSIDKL 233
Query: 273 KKLKHGSLKLKQSVNGLNS-IETL 295
++ K K ++ +N+ IET+
Sbjct: 234 AEVPPRPGKQKPFIHRMNANIETV 257
>gi|302853426|ref|XP_002958228.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
nagariensis]
gi|300256416|gb|EFJ40682.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
nagariensis]
Length = 574
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 128/232 (55%), Gaps = 27/232 (11%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L LL+K+I R+G+K+P+PIQ A IP Q +D+IG AETGSGKT AF LP++
Sbjct: 157 WEESGLPSLLIKAIDRVGYKKPSPIQMAAIPLGLQQ-RDVIGIAETGSGKTAAFVLPMLS 215
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + EE E P A+++ PTRELA Q+ + ++A N R+
Sbjct: 216 YIMRQPPMT--------EENEADGPY----AVVLAPTRELAQQIEEETHKLAYYTNYRIA 263
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+VGG S E+Q L+ E+V+ TPGRL + + ++H L+ ++ VLDEADRMI+
Sbjct: 264 SVVGGQSIEEQGAKLRKGCEIVIATPGRLLDCI---DRHYAVLNQCNYVVLDEADRMIDL 320
Query: 216 GHFRELQSIIDMLPMT--NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++ ++D +P + +G V R R T +FSAT+
Sbjct: 321 GFEPQVIGVLDAMPSSFLKPDEDG---------AVLEANRTYRTTYMFSATM 363
>gi|145539279|ref|XP_001455334.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423133|emb|CAK87937.1| unnamed protein product [Paramecium tetraurelia]
Length = 451
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 133/265 (50%), Gaps = 57/265 (21%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
D EE+ +S + EL + L + +LG+K PTPIQ+ +P Q KDII
Sbjct: 2 DQQEEQQISSV-------TFKELGVCEELSSACEKLGYKIPTPIQQQSLPYTL-QKKDII 53
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
G AETGSGKTLAFGLPI+Q LL P+ + ALI++PTREL
Sbjct: 54 GLAETGSGKTLAFGLPILQHLLAN-------------------PQPYY-ALILSPTRELC 93
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
+Q+ +H + + I ++ V I+GGM Q + L +P +++GTPG++ + +
Sbjct: 94 VQIQEHFQAIGASIALKSVVILGGMDPLAQAKALAQKPHIIIGTPGKILYHLENTKGF-- 151
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
L L F VLDEAD+++ RE+ +I+D++P K+R
Sbjct: 152 NLKQLKFLVLDEADKLLNMDFEREINAILDIIP------------------------KER 187
Query: 257 QTLVFSATIALSADFRKKLKHGSLK 281
T +FSAT+ KL+ SLK
Sbjct: 188 NTYLFSATMTNKVS---KLQRASLK 209
>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 514
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 125/230 (54%), Gaps = 47/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+NE+ L L+++I GF EP+PIQK IP +G+DI+G A+TG+GKT AF LPI+Q
Sbjct: 3 FNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVL-EGRDILGCAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L KGE + +RALIITPTRELA+Q+ + + K +++
Sbjct: 62 SL------------SKGEGS-------GVRALIITPTRELAIQIYESFECFGKYTSLKQS 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ Q LKA ++++ TPGRL +L+ G + L + FVLDEAD+M++
Sbjct: 103 VIYGGVGQSLQVNSLKAGIDILIATPGRLNDLIGQG---YITLDAIEMFVLDEADQMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ +I +LP T RQTL+FSAT+
Sbjct: 160 GFLNDIKKVIKLLPKT------------------------RQTLLFSATM 185
>gi|396488909|ref|XP_003842973.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
gi|312219551|emb|CBX99494.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
Length = 811
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 120/238 (50%), Gaps = 48/238 (20%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ + L +++ + +GF EPTPIQ IP A QGKD++G AETGSGKT AF +PI+
Sbjct: 281 SFQAMSLSRPILRGLAAVGFSEPTPIQNKAIPIAM-QGKDVVGGAETGSGKTAAFLIPIL 339
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELALQVTDHLKEVAKGINV 152
+RLL Y PK R I PTRELA+Q + ++A ++
Sbjct: 340 ERLL-------------------YRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDI 380
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ GG ST+ QE +LK RP++V+ TPGR + M VE L VLDEADRM
Sbjct: 381 TFALMAGGFSTKDQEAVLKTRPDVVIATPGRFIDHMHNTAAFQVE--HLEILVLDEADRM 438
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
+E G +L I+ +P K RQT++FSAT+ + D
Sbjct: 439 LEEGFESQLNEILTTIP------------------------KSRQTMLFSATMTSTVD 472
>gi|427710423|ref|YP_007052800.1| DEAD/DEAH box helicase [Nostoc sp. PCC 7107]
gi|427362928|gb|AFY45650.1| DEAD/DEAH box helicase domain protein [Nostoc sp. PCC 7107]
Length = 476
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 132/232 (56%), Gaps = 39/232 (16%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L +++++ LG+ +PTPIQ IPA G+D++ A+TG+GKT +F LP++
Sbjct: 42 SFSHLGLSNEIIRAVTELGYTKPTPIQMQAIPAVL-SGRDLLAGAQTGTGKTASFTLPLL 100
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q+L E K L+ E +RALI+TPTRELA QV +++E +K + +
Sbjct: 101 QKLSSE-----KSLKSTSYECFP------IRALILTPTRELAAQVELNVREYSKYLKLNT 149
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q++LL+ R +++V TPGRL + + ++ V L + F VLDEADRM++
Sbjct: 150 MAMFGGVSINPQKKLLRGRVDILVATPGRLLDHV---QQRTVNLSNVEFLVLDEADRMLD 206
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G R+++ I+ +LP K+RQ L+F AT +
Sbjct: 207 MGFIRDIRRILSLLP------------------------KQRQNLLFFATFS 234
>gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 495
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 136/263 (51%), Gaps = 45/263 (17%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+ A S++ ++ LHP +++++ G+ TPIQ A IP G+D++GAA+TG+G
Sbjct: 6 TSAAPSSDPVTFDTFGLHPDILRALAESGYTRATPIQAAAIPVVI-AGRDVMGAAQTGTG 64
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHL 143
KT F LPI+Q LL + + +P H +RALI+TPTRELA QV D++
Sbjct: 65 KTAGFSLPIIQNLLPDANTSA-------------SPARHPVRALILTPTRELADQVYDNV 111
Query: 144 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203
+ AK +R + GG+ Q L+ E++V TPGRL + + ++ V L +
Sbjct: 112 AKYAKHTALRSAVVFGGVDMNPQTEQLRRGVEVLVATPGRLLDHV---QQRSVNLSQVRM 168
Query: 204 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
VLDEADRM++ G +LQ II++LP RQTL+FSA
Sbjct: 169 LVLDEADRMLDMGFLPDLQRIINLLP------------------------AHRQTLLFSA 204
Query: 264 TIALSADFRKKLKHGSLKLKQSV 286
T + KKL L+ Q++
Sbjct: 205 TFSPEI---KKLAASYLRHPQTI 224
>gi|315452663|ref|YP_004072933.1| ATP-dependent RNA helicase [Helicobacter felis ATCC 49179]
gi|315131715|emb|CBY82343.1| ATP-dependent RNA helicase,DEAD box helicase family protein
[Helicobacter felis ATCC 49179]
Length = 469
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 108/195 (55%), Gaps = 27/195 (13%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L LHP ++KSI GF +P+PIQ+ IP QG+D+I A+TG+GKT AF LPI+
Sbjct: 20 FKDLGLHPRILKSIAEAGFVQPSPIQEKAIPVIL-QGRDVIAQAQTGTGKTAAFALPIIH 78
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L +R + ALIITPTRELA+Q++D + + K R +
Sbjct: 79 NLKNDRS---------------------VEALIITPTRELAMQISDEIFRLGKSSRTRTI 117
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-KHLVELHTLSFFVLDEADRMIE 214
I GG S KQ LL+ RP++++ TPGRL + + KH VLDE+D M++
Sbjct: 118 CIYGGQSIRKQCELLEKRPQVMIATPGRLLDHLKNKRLKHF----NPKVVVLDESDEMLD 173
Query: 215 NGHFRELQSIIDMLP 229
G +++ I D LP
Sbjct: 174 MGFLDDIEEIFDYLP 188
>gi|340923930|gb|EGS18833.1| hypothetical protein CTHT_0054430 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 709
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 127/231 (54%), Gaps = 17/231 (7%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L L+ +YR+G+ EPTPIQ+A IP A Q +D+IG A TGSGKT AF LP++
Sbjct: 278 WEESGLPRRLLDIVYRVGYDEPTPIQRAAIPIAL-QARDLIGVAVTGSGKTAAFLLPLLV 336
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ E L E + YA LI+ PTREL Q+ ++ A + VV
Sbjct: 337 YISEL-----PPLTEYNKNDGPYA-------LILAPTRELVQQIESEARKFADPLGFTVV 384
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
IVGG S E+Q L+ E++V TPGRL + + E+ L+ + ++DEADRMI+
Sbjct: 385 SIVGGHSLEEQAFALRNGAEIIVATPGRLVDCI---ERRLLVFSQCCYVIMDEADRMIDQ 441
Query: 216 GHFRELQSIIDMLPMTNGSNEGQ-SEQTQTCVTVSSLQRKKRQTLVFSATI 265
G L I+D LP++N + + +E Q + + RQT++++AT+
Sbjct: 442 GFEEPLTKILDALPVSNEKPDTEDAENPQLMSRYLGGRDRYRQTMMYTATM 492
>gi|238484285|ref|XP_002373381.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|317140428|ref|XP_001818181.2| ATP-dependent RNA helicase drs1 [Aspergillus oryzae RIB40]
gi|91206589|sp|Q2UQI6.2|DRS1_ASPOR RecName: Full=ATP-dependent RNA helicase drs1
gi|220701431|gb|EED57769.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|391871961|gb|EIT81110.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 820
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 131/257 (50%), Gaps = 53/257 (20%)
Query: 19 AEEELVSE---AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
A EE SE AE+S + ++ E L +++ + + F PTPIQ+ IP A GKDI
Sbjct: 286 APEEQTSEQSAAELSKK--SFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALL-GKDI 342
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTR 133
+G+A TGSGKT AF +PI++RLL + P+ R I+ PTR
Sbjct: 343 VGSAVTGSGKTAAFVVPILERLL-------------------FRPRKVPTSRVAILMPTR 383
Query: 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193
ELA+Q + ++A ++ +VGG S +QE +LK RP++++ TPGR + M
Sbjct: 384 ELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSAS 443
Query: 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQR 253
V+ TL VLDEADRM+E+G EL I+ +P
Sbjct: 444 FTVD--TLEILVLDEADRMLEDGFADELNEILTTIP------------------------ 477
Query: 254 KKRQTLVFSATIALSAD 270
K RQT++FSAT+ S D
Sbjct: 478 KSRQTMLFSATMTDSVD 494
>gi|41054055|ref|NP_956176.1| probable ATP-dependent RNA helicase DDX23 [Danio rerio]
gi|38014376|gb|AAH60524.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Danio rerio]
Length = 807
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 133/232 (57%), Gaps = 17/232 (7%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L P +++ I + G+K+PTPIQ+ IP Q +DIIG AETGSGKT AF +P++
Sbjct: 380 WKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAAFLIPLLV 438
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ K ++ E P A+I+ PTRELA Q+ + + K + +R V
Sbjct: 439 -WITTLPKIDRI------EDSDQGPY----AIILAPTRELAQQIEEETIKFGKPLGIRTV 487
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VLDEADRMI+
Sbjct: 488 AVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVLDEADRMIDM 544
Query: 216 GHFRELQSIIDMLPMTNG--SNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++Q I++ +P+TN + + + S + K RQT++F+AT+
Sbjct: 545 GFEPDVQKILEYIPVTNQKPDTDDAEDPEKMMQNFESGKHKYRQTVMFTATM 596
>gi|117921427|ref|YP_870619.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117613759|gb|ABK49213.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 433
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 125/231 (54%), Gaps = 43/231 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ P ++++I G+++ TPIQ+ IPA +G+D++ +A+TG+GKT AF LPI+Q
Sbjct: 3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAI-RRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
KM+E E K + R LI+TPTRELA QV D+++ +K +N V+
Sbjct: 62 ----------KMVENPSETL-----KSNARVLILTPTRELAAQVADNVEAYSKYLNFSVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ E Q + LK +++V TPGRL E ++ + L ++ F VLDEADRM++
Sbjct: 107 TIYGGVKVETQAQKLKRGADIIVATPGRLLEHLTACN---LSLSSIDFLVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G ++Q I+ + KKRQ L+FSAT +
Sbjct: 164 GFNADIQKILQAV------------------------NKKRQNLLFSATFS 190
>gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 530
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 128/233 (54%), Gaps = 49/233 (21%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
F+ + + L L++ I GF++PTPIQ IP A G D++G A+TG+GKT +FG+P
Sbjct: 3 FENFYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAM-AGLDLMGQAQTGTGKTASFGIP 61
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
I+ R++ KGE L+AL++ PTRELA+QVT+ + +++ + +
Sbjct: 62 ILNRVI------------KGE---------GLQALVLCPTRELAVQVTEEISSLSRRMRI 100
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+V+ I GG S E Q R L+ PE++VGTPGRL + M+ G + L L + VLDEAD M
Sbjct: 101 QVLAIYGGQSIELQLRSLRRNPEIIVGTPGRLMDHMNRGT---ISLSPLKYVVLDEADEM 157
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ G ++Q I+ P ++RQT +FSAT+
Sbjct: 158 LDMGFLPDIQKILSQCP------------------------RERQTFLFSATL 186
>gi|312375100|gb|EFR22532.1| hypothetical protein AND_15065 [Anopheles darlingi]
Length = 821
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 142/231 (61%), Gaps = 16/231 (6%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E +++ I ++G+K+PTPIQ+ IP Q +DIIG AETGSGKTLAF +P++
Sbjct: 395 WIESGFPKEILEIIDKVGYKDPTPIQRQAIPIGL-QNRDIIGIAETGSGKTLAFLIPLLT 453
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ + K+ E ++ A +G A+I+ PTRELA Q+ + ++ + +R V
Sbjct: 454 WI----QSLPKI------ERQETADQGPY-AIILAPTRELAQQIEEETQKFGTPLGIRTV 502
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++ V+DEADRMI+
Sbjct: 503 VVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTYIVMDEADRMIDM 559
Query: 216 GHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++Q I++ +P+TN + ++E + + ++K RQT++F+AT+
Sbjct: 560 GFEPDVQKILEYMPVTNLKPDTEEAEDASKLMENFNTKKKYRQTVMFTATM 610
>gi|367052807|ref|XP_003656782.1| hypothetical protein THITE_2121904 [Thielavia terrestris NRRL 8126]
gi|347004047|gb|AEO70446.1| hypothetical protein THITE_2121904 [Thielavia terrestris NRRL 8126]
Length = 718
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 130/238 (54%), Gaps = 17/238 (7%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 88
I +W E L L++ ++ +G+ EPTPIQ+A IP A Q +D+IG A TGSGKT A
Sbjct: 276 IPNPMRSWQESNLPRRLLEIVHSVGYDEPTPIQRAAIPIAL-QARDLIGVAVTGSGKTAA 334
Query: 89 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148
F LP++ + E L E+ + P ALI+ PTREL Q+ ++ A
Sbjct: 335 FLLPLLVYISE--------LPPLTEDNKNDGPY----ALILAPTRELVQQIETEARKFAD 382
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ VV IVGG S E+Q L+ E++V TPGRL + + E+ L+ + ++DE
Sbjct: 383 PLGFTVVSIVGGHSLEEQAFALRNGAEIIVATPGRLVDCL---ERRLLVFSQCCYIIMDE 439
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQ-SEQTQTCVTVSSLQRKKRQTLVFSATI 265
ADRMI+ G L I+D LP+TN + + +E Q + + RQT++++AT+
Sbjct: 440 ADRMIDQGFEEPLTKILDALPVTNEKPDTEDAENPQLMSRYLGGKDRYRQTMMYTATM 497
>gi|442320812|ref|YP_007360833.1| putative ATP-dependent RNA helicase RhlE [Myxococcus stipitatus DSM
14675]
gi|441488454|gb|AGC45149.1| putative ATP-dependent RNA helicase RhlE [Myxococcus stipitatus DSM
14675]
Length = 497
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 120/230 (52%), Gaps = 43/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL+LH L++++ G+ PTPIQ IP A GKD++G A+TG+GKT AF LPI+Q
Sbjct: 3 FDELQLHDTLLRAVKAEGYTTPTPIQAKAIPHAL-AGKDVLGVAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL + G +R L++TPTRELA QV + K + +R
Sbjct: 62 RLSAKAPAGGAR---------------PVRCLVLTPTRELAGQVGESFMTYGKNLPLRHA 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ Q + L+ +++V TPGRL +LM G V L +L FVLDEADRM++
Sbjct: 107 VIFGGVGQGAQVQSLQRGVDVLVATPGRLLDLMDQG---YVSLRSLEVFVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ +I LP KRQTL FSAT+
Sbjct: 164 GFIHDVRKVIKALP------------------------SKRQTLFFSATM 189
>gi|417994179|ref|ZP_12634513.1| cold-shock DEAD-box protein A [Lactobacillus casei CRF28]
gi|410530495|gb|EKQ05268.1| cold-shock DEAD-box protein A [Lactobacillus casei CRF28]
Length = 502
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 124/233 (53%), Gaps = 48/233 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L+K+I + GF+E TPIQ IP GKD+IG A+TG+GKT AFGLPI+Q
Sbjct: 3 FKELGLDHDLLKAIAQSGFEEATPIQAETIPLVL-AGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ +KA + ++ AL+I+PTRELA+Q + L + + ++V
Sbjct: 62 NI----DKADRSIQ----------------ALVISPTRELAIQTQEELYRLGQDKKIKVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R L P++VVGTPGR+ + + +H ++L L VLDEAD M++
Sbjct: 102 AVYGGADIRRQIRQLSEHPQIVVGTPGRILDHIG---RHTLKLQNLKVLVLDEADEMLDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
G +++ I++ +P RQTL+FSATI S
Sbjct: 159 GFIDDIEKIVEQMPTA------------------------RQTLLFSATIPAS 187
>gi|167041390|gb|ABZ06143.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
HF4000_005K23]
Length = 427
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 124/231 (53%), Gaps = 50/231 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L+ L SI R+ FK PTPIQ IP A GKDI+G A+TG+GKTL +G+ +
Sbjct: 4 FSELNLNESLKHSIARMYFKIPTPIQAQAIPPAL-LGKDILGTAQTGTGKTLCYGIACIN 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE-VAKGINVRV 154
+LL +R ALII PTRELA+QV D L + +N++
Sbjct: 63 KLLNDRGS---------------------NALIICPTRELAVQVGDVLNGLIENTMNIKS 101
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
++GG S +KQ R L+ RP L++GTPGRL + + ++ ++LH F VLDE DRM++
Sbjct: 102 AVLIGGESMQKQLRQLQKRPRLIIGTPGRLNDHL---KRKSLKLHQSYFLVLDETDRMLD 158
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ +P KK QTL+FSAT+
Sbjct: 159 MGFIPQVEQILKFVP------------------------KKHQTLLFSATL 185
>gi|170582680|ref|XP_001896237.1| CG10333-PA [Brugia malayi]
gi|158596582|gb|EDP34904.1| CG10333-PA, putative [Brugia malayi]
Length = 719
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 136/232 (58%), Gaps = 16/232 (6%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L + I ++G+KEPTPIQ+ IP Q +DIIG AETGSGKT AF +P++
Sbjct: 314 WEEAGLPAEVFDVIMKIGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAAFLIPLLV 372
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ + + G + + P A+I+ PTRELA Q+ + + + + +R V
Sbjct: 373 WITS-------IPKFHGNDDQDTGPY----AIIMAPTRELAQQIEEETVKFGQLLGIRTV 421
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
++GG S E+Q L+ E+V+ TPGRL +++ E + L ++ +LDEADRM++
Sbjct: 422 SVIGGASREEQGLKLRLGVEVVIATPGRLLDVL---ENRYLSLDQCTYVILDEADRMLDM 478
Query: 216 GHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G E+Q +++ +P+TN + ++E+ ++ + ++K RQT++F+AT++
Sbjct: 479 GFEPEVQKVLEYIPVTNLKPDTEEAEKEESIMENFYSKKKYRQTVMFTATMS 530
>gi|153809380|ref|ZP_01962048.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
gi|423221053|ref|ZP_17207547.1| hypothetical protein HMPREF1061_04320 [Bacteroides caccae
CL03T12C61]
gi|149127966|gb|EDM19188.1| DEAD/DEAH box helicase [Bacteroides caccae ATCC 43185]
gi|392622292|gb|EIY16424.1| hypothetical protein HMPREF1061_04320 [Bacteroides caccae
CL03T12C61]
Length = 375
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 131/230 (56%), Gaps = 42/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++K+I G+ PTPIQ+ IPAA + +DI+G A+TG+GKT +F +PI+Q
Sbjct: 3 FKELNITEPILKAIKEKGYTVPTPIQEKAIPAALAK-RDILGCAQTGTGKTASFAIPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L + +E+ K + ++ALI+TPTRELALQ+++ + + +K VR
Sbjct: 62 HL-----------QVVSKESVK---RQGIKALILTPTRELALQISECIDDYSKYTRVRHG 107
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG++ Q +L+ +++V TPGRL +LM+ G HL T+ +FVLDEADRM++
Sbjct: 108 VIFGGVNQRPQVDMLRKGIDILVATPGRLLDLMNQGHIHL---DTIQYFVLDEADRMLDM 164
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ LP K++QTL FSAT+
Sbjct: 165 GFIHDIKRILPKLP------------------------KEKQTLFFSATM 190
>gi|347821466|ref|ZP_08874900.1| DEAD/DEAH box helicase domain-containing protein, partial
[Verminephrobacter aporrectodeae subsp. tuberculatae
At4]
Length = 464
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 135/252 (53%), Gaps = 43/252 (17%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L P ++K+++ G++ PTPIQ IPA QG D++ A+TG+GKT AF LPI+
Sbjct: 3 FDELNLAPAILKAVHETGYETPTPIQAQAIPAVL-QGHDLLAGAQTGTGKTAAFTLPILH 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL K+ KG +RAL++TPTRELA QV + ++E K +++
Sbjct: 62 RL-----------SLSTAPRNKFGGKG-IRALVLTPTRELAAQVEESVREYGKYLDIDST 109
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG+ Q +K +++V TPGRL +L G V+L + VLDEADRM++
Sbjct: 110 VVFGGVGMNPQIERMKRGVDILVATPGRLLDLQQQG---FVDLSAVQVLVLDEADRMLDM 166
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275
G +++ ++ ++P ++RQ+L+FSAT +D ++L
Sbjct: 167 GFIHDVKKLLALVP------------------------RQRQSLLFSATF---SDEIREL 199
Query: 276 KHGSLKLKQSVN 287
G LK QS+
Sbjct: 200 ASGLLKDPQSIQ 211
>gi|255941704|ref|XP_002561621.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586244|emb|CAP93992.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 815
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 123/237 (51%), Gaps = 48/237 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E L +++ + +GF +PTPIQ+ IP A GKDI+G+A TGSGKT AF +PI++
Sbjct: 306 FQEFNLSRPILRGLAAVGFTDPTPIQRKAIPVALL-GKDIVGSAVTGSGKTAAFIVPILE 364
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELALQVTDHLKEVAKGINVR 153
RLL + P+ R +I+ PTRELA+Q + ++A +V
Sbjct: 365 RLL-------------------FRPRKVPTSRVVILMPTRELAVQCYNVSVKLATFTDVT 405
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+VGG S +QE +LK RP++++ TPGR + M V+ TL VLDEADRM+
Sbjct: 406 FCQLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRNSPSFTVD--TLEILVLDEADRML 463
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
E+G EL I+ +P K RQT++FSAT+ S D
Sbjct: 464 EDGFADELNEILTTIP------------------------KSRQTMLFSATMTDSID 496
>gi|68484469|ref|XP_713845.1| hypothetical protein CaO19.8289 [Candida albicans SC5314]
gi|68484548|ref|XP_713805.1| hypothetical protein CaO19.672 [Candida albicans SC5314]
gi|74656226|sp|Q59W52.1|PRP28_CANAL RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
gi|46435319|gb|EAK94703.1| hypothetical protein CaO19.672 [Candida albicans SC5314]
gi|46435361|gb|EAK94744.1| hypothetical protein CaO19.8289 [Candida albicans SC5314]
Length = 581
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 131/232 (56%), Gaps = 23/232 (9%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
WNE ++ L+ I +LG++EPT +Q+A IP A + +D++G AETGSGKTLAF +P++
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKK-RDVVGVAETGSGKTLAFLIPVLN 228
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L E K + E P G LI+ PTRELALQ+T ++ K + +V+
Sbjct: 229 YILSIDENYLKYEKISNE------PVG----LILAPTRELALQITKEAEKFCKKLGYQVL 278
Query: 156 PIVGGMSTEKQ-ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
PI+GG + ++ + L+V TPGR L+ E+ +V+L V+DEADRMI+
Sbjct: 279 PIIGGHHYQDTINKIDQTGVHLIVATPGR---LVDSIERKIVDLSKCYCLVMDEADRMID 335
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G ++L ++D LP +Q + + +KR T++F+ATI+
Sbjct: 336 MGFEKDLNKVLDKLPT--------EKQLSSTIDGRIFHLEKRSTMMFTATIS 379
>gi|417990847|ref|ZP_12631309.1| cold-shock DEAD-box protein A [Lactobacillus casei A2-362]
gi|410533506|gb|EKQ08184.1| cold-shock DEAD-box protein A [Lactobacillus casei A2-362]
Length = 502
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 124/233 (53%), Gaps = 48/233 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L+K+I + GF+E TPIQ IP GKD+IG A+TG+GKT AFGLPI+Q
Sbjct: 3 FKELGLDHDLLKAIAQSGFEEATPIQAETIPLVL-AGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ +KA + ++ AL+I+PTRELA+Q + L + + ++V
Sbjct: 62 NI----DKADRSIQ----------------ALVISPTRELAIQTQEELYRLGQDKKIKVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R L P++VVGTPGR+ + + +H ++L L VLDEAD M++
Sbjct: 102 AVYGGADIRRQIRQLSEHPQIVVGTPGRILDHIG---RHTLKLQNLKVLVLDEADEMLDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
G +++ I++ +P RQTL+FSATI S
Sbjct: 159 GFIDDIEKIVEQMPTA------------------------RQTLLFSATIPAS 187
>gi|347524843|ref|YP_004831591.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
gi|345283802|gb|AEN77655.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
Length = 497
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+NEL L L+K+I R GF+E TPIQ+A IP G D+IG A+TG+GKT AFGLPI+Q
Sbjct: 3 FNELGLEEDLLKAIKRSGFEEATPIQEATIPLVL-AGIDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ + E H++A++I+PTRELA+Q + L + K +V
Sbjct: 62 HVDVKEE--------------------HIQAIVISPTRELAIQTQEELYRLGKDKRAKVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q +LLK P+++VGTPGRL + ++ + V+L + VLDEAD M++
Sbjct: 102 VVYGGADIRRQIKLLKHVPQILVGTPGRLLDHIN---RKTVDLSHVKTLVLDEADEMLDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++II +P ++RQTL+FSAT+
Sbjct: 159 GFLEDIEAIIKNVP------------------------EERQTLLFSATM 184
>gi|68473179|ref|XP_719395.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
gi|74656492|sp|Q5ACK7.1|DRS1_CANAL RecName: Full=ATP-dependent RNA helicase DRS1
gi|46441210|gb|EAL00509.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
gi|238880416|gb|EEQ44054.1| hypothetical protein CAWG_02313 [Candida albicans WO-1]
Length = 613
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 125/232 (53%), Gaps = 46/232 (19%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ L+L ++K I L F +PTPIQ A IP A GKDI+ A+TGSGKT A+ +PI+
Sbjct: 131 SFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALL-GKDIVAGAQTGSGKTGAYMIPII 189
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVR 153
+RLL Y P + +I+TPTRELALQV + K+++ + N+
Sbjct: 190 ERLL-------------------YKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLN 230
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+ VGG++ +QE LK RP++V+ TPGRL + + V+ + V+DEADRM+
Sbjct: 231 IGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQ--DIQVLVIDEADRML 288
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
E G EL I+ ++P + KRQTL+FSAT+
Sbjct: 289 EEGFQDELTEILSLIP-----------------------KHKRQTLLFSATM 317
>gi|337745879|ref|YP_004640041.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|379719836|ref|YP_005311967.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|386722433|ref|YP_006188759.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|336297068|gb|AEI40171.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
gi|378568508|gb|AFC28818.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384089558|gb|AFH60994.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
Length = 537
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 142/254 (55%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++E L P ++++I +GF+E TPIQ+ IP A +G+D+IG A+TG+GKT AFG+P++
Sbjct: 4 FSEFGLEPKVLRAITEMGFEESTPIQEKAIPVAL-EGRDLIGQAQTGTGKTAAFGIPLVN 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + EK + ALI+ PTRELA+QV + ++++ + +R +
Sbjct: 63 KIDVKEEK--------------------IVALIMCPTRELAIQVAEEIEKLGRFKGIRSL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG KQ R L+ +P++++GTPGRL + ++ + ++L + +LDEAD M++
Sbjct: 103 PIYGGQDIVKQIRGLRKKPQIIIGTPGRLLDHIN---RKTIKLDDVQTVILDEADEMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++SI+ ++P ++R T++FSAT+ L+
Sbjct: 160 GFMDDIKSILSLVP------------------------EERNTMLFSATMPVNIQKLAQQ 195
Query: 271 FRKKLKHGSLKLKQ 284
F K +H S+ KQ
Sbjct: 196 FLKDPEHVSVIPKQ 209
>gi|255973920|ref|ZP_05424506.1| helicase [Enterococcus faecalis T2]
gi|255966792|gb|EET97414.1| helicase [Enterococcus faecalis T2]
Length = 515
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 133/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+ ++ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP++
Sbjct: 3 FKELGLAPELLSAVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPMLN 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +A+ +G L+I PTRELA+Q + L + + +RV
Sbjct: 62 KI----------------DADNRVIQG----LVIAPTRELAIQTQEELFRLGRDKKIRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGRL + ++ + ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRLLDHIN---RRTLKLETVETLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P ++RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIISQVP------------------------EQRQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K+ +H +K K+
Sbjct: 195 FMKQPEHVKIKAKE 208
>gi|300779365|ref|ZP_07089223.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
gi|300504875|gb|EFK36015.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
Length = 434
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 123/230 (53%), Gaps = 45/230 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L + K+I G+ PTPIQ+ IP G+D +G A+TG+GKT AF +PI+Q
Sbjct: 3 FTDLNLIEPIAKAIQEQGYTTPTPIQERSIPDIL-DGRDFLGCAQTGTGKTAAFSIPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L + + P H++ALI+TPTRELA+Q+ +++ K + ++ +
Sbjct: 62 NLSKNK-----------------IPNKHIKALILTPTRELAIQIEENINAYGKYLPLKQL 104
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ QE LK +++V TPGRL + ++ G ++ L L FVLDEADRM++
Sbjct: 105 VIFGGVKQGNQEAALKKGVDILVATPGRLLDFIAQG---IISLKNLEIFVLDEADRMLDM 161
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ +I +LP ++RQTL FSAT+
Sbjct: 162 GFVHDVKRVIKLLP------------------------QRRQTLFFSATM 187
>gi|119186507|ref|XP_001243860.1| hypothetical protein CIMG_03301 [Coccidioides immitis RS]
gi|118595360|sp|Q1E2B2.1|DRS1_COCIM RecName: Full=ATP-dependent RNA helicase DRS1
gi|392870577|gb|EAS32387.2| ATP-dependent RNA helicase DRS1 [Coccidioides immitis RS]
Length = 840
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 128/254 (50%), Gaps = 48/254 (18%)
Query: 19 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
A EE +++E ++ + L +++ + +GF PTPIQ+ IP GKD++G
Sbjct: 304 APEENPTKSEETSSNSTFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLL-GKDLVGG 362
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELA 136
A TGSGKT AF +PI++RLL Y P+ R I+ PTRELA
Sbjct: 363 AVTGSGKTAAFIIPILERLL-------------------YRPRKVPTSRVAILMPTRELA 403
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
+Q + ++A ++ +VGG S +QE +LK RP++++ TPGR + M V
Sbjct: 404 VQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRNSASFTV 463
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
+ TL VLDEADRM+E+G EL I++ +P K R
Sbjct: 464 D--TLEILVLDEADRMLEDGFADELNEILNTIP------------------------KSR 497
Query: 257 QTLVFSATIALSAD 270
QT++FSAT+ S D
Sbjct: 498 QTMLFSATMTDSVD 511
>gi|423553834|ref|ZP_17530161.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus ISP3191]
gi|401182654|gb|EJQ89786.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus ISP3191]
Length = 528
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTHKES--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|213408188|ref|XP_002174865.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
gi|212002912|gb|EEB08572.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
Length = 730
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 125/238 (52%), Gaps = 48/238 (20%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ +++L +++ + L F++PTPIQ IP A GKDI+GAA TGSGKT AF +PI+
Sbjct: 232 SFQDMKLSRPILRGLSSLNFEDPTPIQSKTIPVAL-LGKDIVGAAVTGSGKTAAFVVPIL 290
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELALQVTDHLKEVAKGINV 152
+RL+ Y PK R LII PTRELA+Q + K +A ++
Sbjct: 291 ERLV-------------------YRPKKIPTSRVLIICPTRELAMQCHNVAKRIAAFTDI 331
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ VGG+S + QE+ L+ RP++++ TPGR + + + V+ + V+DEADRM
Sbjct: 332 TLCLCVGGLSLKVQEQELRKRPDIIIATPGRFIDHVRNSQGFSVD--NIEIMVIDEADRM 389
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
+E+G EL I+ + P K RQT++FSAT+ D
Sbjct: 390 LEDGFADELNEIVKLCP------------------------KSRQTMLFSATMTEKVD 423
>gi|429463016|ref|YP_007184479.1| DEAD/DEAH box helicase family protein [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811795|ref|YP_007448250.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|429338530|gb|AFZ82953.1| DEAD/DEAH box helicase family protein [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776953|gb|AGF47952.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 467
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 127/232 (54%), Gaps = 46/232 (19%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ L L+ ++ +I GF+ PTP+Q+A IP A + +D++ +A+TGSGKT AF LPI+
Sbjct: 2 SFENLGLNANILNAIKATGFESPTPVQQATIPKAILK-QDLVVSAQTGSGKTAAFMLPIL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN-VR 153
Q L +EK A ++ L++TPTRELA+Q+T ++ +R
Sbjct: 61 QHL-----------------SEKKAQNTSIQVLVLTPTRELAMQITKAASVYGSNLHWLR 103
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
V IVGGM + Q + L R +++V TPGRL + M G L +HTL VLDEADRM+
Sbjct: 104 VATIVGGMPYKAQIKALSKRIDILVATPGRLIDQMQSGRVDLKNVHTL---VLDEADRML 160
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G ++Q+I+ LP K++QT++FSATI
Sbjct: 161 DMGFIDDIQTIVAELP------------------------KEKQTMLFSATI 188
>gi|334340716|ref|YP_004545696.1| DEAD/DEAH box helicase [Desulfotomaculum ruminis DSM 2154]
gi|334092070|gb|AEG60410.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum ruminis DSM
2154]
Length = 482
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 136/254 (53%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++++ +GF+E TPIQ+ IP A Q +D+IG A TG+GKT AFG+P+++
Sbjct: 4 FYELGLSESLLQALANMGFEEATPIQEKTIPVALQQ-RDLIGQAHTGTGKTAAFGVPMVE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ EE ++ ++ L+ITPTRELA+QV + L + + +R +
Sbjct: 63 KFEEEADR--------------------VQGLVITPTRELAVQVAEELNRIGQIKGIRTL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q + LK RP ++VGTPGRL + M ++ + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIKALKKRPHIIVGTPGRLMDHM---DRRTLRLQGIKMVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI-----ALSAD 270
G ++++I+ +P ++RQ+L+FSAT+ L+
Sbjct: 160 GFIEDIEAILQEIP------------------------EERQSLLFSATMPKPIQVLAQR 195
Query: 271 FRKKLKHGSLKLKQ 284
F K + S+K K+
Sbjct: 196 FLKDPEFISIKAKE 209
>gi|374997699|ref|YP_004973198.1| DNA/RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357216065|gb|AET70683.1| DNA/RNA helicase, superfamily II [Desulfosporosinus orientis DSM
765]
Length = 500
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L +++SI +GF+E TPIQ+ IP A +G+D+IG A+TG+GKT A+G+P+++
Sbjct: 4 FTDLGLSESIIRSIINMGFEETTPIQEQTIPIAM-EGRDLIGQAQTGTGKTAAYGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
R++ + E H++ +++ PTRELA+QV + L ++ + + +
Sbjct: 63 RIVGQSE--------------------HIQGIVLAPTRELAVQVAEELNKIGQYKRIHAL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG E Q R LK RP ++V TPGRL + M + + L+ + VLDEAD M+
Sbjct: 103 PIYGGQGIEWQIRALKKRPHIIVATPGRLMDHM---RRKTIRLNDIKILVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P ++RQTL+FSAT+
Sbjct: 160 GFLDDIETILKEVP------------------------EERQTLLFSATM 185
>gi|212540616|ref|XP_002150463.1| DEAD/DEAH box helicase, putative [Talaromyces marneffei ATCC 18224]
gi|210067762|gb|EEA21854.1| DEAD/DEAH box helicase, putative [Talaromyces marneffei ATCC 18224]
Length = 808
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 133/233 (57%), Gaps = 16/233 (6%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W E L L+ I ++G+ +PTPIQ+A IP A Q +D+IG A TGSGKT +F LP++
Sbjct: 369 SWEESGLPRRLLDLIKQVGYADPTPIQRAAIPIAL-QSRDLIGVAVTGSGKTASFLLPLL 427
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+ E + +E E G A+I+ PTRELA Q+ K+ +K +N V
Sbjct: 428 VYIAEL---------PRLDEFEWRKNDGPY-AIILAPTRELAQQIEIEAKKFSKPLNFNV 477
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V IVGG S E+Q L+ E+++ TPGRL + + E+ ++ L + ++DEADRMI+
Sbjct: 478 VSIVGGHSLEEQAYSLRDGAEIIIATPGRLVDCL---ERRMLVLSQCCYVIMDEADRMID 534
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVT--VSSLQRKKRQTLVFSATI 265
G + I+D LP+TN + + + ++ V R+ RQT++++AT+
Sbjct: 535 LGFEEPVNKILDALPVTNEKPDTEEAEDAQAMSQHVGGRDRRYRQTMMYTATM 587
>gi|444352450|ref|YP_007388594.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes EA1509E]
gi|443903280|emb|CCG31054.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes EA1509E]
Length = 446
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 132/232 (56%), Gaps = 42/232 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L+P +++++ G+ EPTPIQ+ IPA QG+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVL-QGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
QRL +E+ A KG +RALI+TPTRELA QV +++++ +K +N+R
Sbjct: 61 QRLTQEQPHA------KGRRP--------VRALILTPTRELAAQVGENVRDYSKYLNIRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q L+ +++V TPGRL +L ++ V L + VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDILVATPGRLLDLE---HQNAVSLDKVEVLVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +++ ++ LP +RQ L+FSAT +
Sbjct: 164 MGFIHDIRRVLAKLP------------------------PRRQNLLFSATFS 191
>gi|327264401|ref|XP_003217002.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Anolis
carolinensis]
Length = 820
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 143/242 (59%), Gaps = 19/242 (7%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
+I +W + L P +++ I + G+KEPTPIQ+ IP Q +DIIG AETGSGKT
Sbjct: 384 GKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKT 442
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF +P++ + K ++ EE+++ P A+I+ PTRELA Q+ + +
Sbjct: 443 AAFLIPLLV-WITTLPKIDRI-----EESDQ-GPY----AIILAPTRELAQQIEEETIKF 491
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
K + +R V ++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VL
Sbjct: 492 GKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVL 548
Query: 207 DEADRMIENGHFRELQSIIDMLPMTN---GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
DEADRMI+ G ++Q I++ +P+TN ++E + + + S + K RQT++F+A
Sbjct: 549 DEADRMIDMGFEPDVQKILEHMPVTNQKPDTDEAE-DPDKMMANFESGKHKYRQTVMFTA 607
Query: 264 TI 265
T+
Sbjct: 608 TM 609
>gi|442771472|gb|AGC72158.1| ATP-dependent RNA helicase RhlE [uncultured bacterium A1Q1_fos_560]
Length = 449
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 130/232 (56%), Gaps = 35/232 (15%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ EL L L + + GF PTPIQ A IP A +G+D++ A+TGSGKTLAF +P++
Sbjct: 3 SFAELSLTSFLADRLRQAGFTAPTPIQGAAIPLAL-EGRDLLAQAKTGSGKTLAFLIPLI 61
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+R ++E K G A + RAL++ PTRELALQ+ L++ A +V
Sbjct: 62 ERAVKENWKPA------GHGAAQAGSSRSPRALVLAPTRELALQIEMELRKYAPP-SVTS 114
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+ E+ R L+ P +V+GTPGRL ++ G +HL +L + + V+DEAD+M++
Sbjct: 115 LAVYGGVPIERHYRALRQPPLIVIGTPGRLLDV--AGTRHL-DLRGIEYVVMDEADQMLD 171
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G R++Q I+ +LP +RQT++FSAT +
Sbjct: 172 RGFLRDIQRILQLLP------------------------AQRQTMLFSATFS 199
>gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
DSM 12442]
gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
DSM 12442]
Length = 528
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTHKES--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
Rock3-17]
gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
Rock3-17]
Length = 536
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTHKES--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|398835789|ref|ZP_10593146.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
gi|398215227|gb|EJN01792.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
Length = 487
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 123/232 (53%), Gaps = 42/232 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + L P +++++ G+ PTPIQ IP QG+D++GAA+TG+GKT F LPI+Q
Sbjct: 18 FEDFGLSPDILRALTEQGYVHPTPIQAQAIPVVL-QGRDVMGAAQTGTGKTAGFSLPIIQ 76
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRV 154
LL + +P H +RALI+TPTRELA QV D++K ++ +R
Sbjct: 77 LLL-------------AHASTSASPARHPVRALILTPTRELADQVADNVKAYSRFTPLRS 123
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG+ Q L+A E+V+ TPGRL + + ++ V L V+DEADRM++
Sbjct: 124 TVVFGGVDMAPQTATLRAGVEIVIATPGRLLDHV---QQKTVNLSQTQILVMDEADRMLD 180
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +LQ II++LP KKRQ L+FSAT +
Sbjct: 181 MGFLPDLQRIINLLP------------------------KKRQNLMFSATFS 208
>gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis]
gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis]
Length = 523
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 140/285 (49%), Gaps = 53/285 (18%)
Query: 16 PDDAEEELVSEAEISTEFD---AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
PD ++ + EAE + + D W +L L+ L K+ L +K P+ IQK IP A QG
Sbjct: 43 PDTSDPDEADEAEEAPKDDQPLTWKDLGLNDTLCKACEELKWKAPSKIQKEAIPVAL-QG 101
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132
KD+IG AETGSGKT AF LPI+ LLE P+ + AL++TPT
Sbjct: 102 KDVIGLAETGSGKTGAFALPILHALLEN-------------------PQRYF-ALVLTPT 141
Query: 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192
RELA Q+ + + + GI ++ +VGGM Q L +P +++ TPGRL + + +
Sbjct: 142 RELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENLK 201
Query: 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQ 252
L + + V+DEADR++ EL I+ +LP
Sbjct: 202 G--FNLKAIKYLVMDEADRILNMDFEVELDKILKVLP----------------------- 236
Query: 253 RKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSE 297
++R+T +FSAT+ KKL+ SLK V N +T+ +
Sbjct: 237 -RERRTFLFSATMTKKV---KKLQRASLKDPVKVEVSNKYQTVDQ 277
>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
15579]
gi|387819068|ref|YP_005679415.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
gi|187772242|gb|EDU36044.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
Length = 524
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 130/230 (56%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L L+ ++K+I +GF+ P+ IQ+ IP +G D+I A+TG+GKTLAFG P++
Sbjct: 6 FENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVL-EGADVIAQAQTGTGKTLAFGAPVIS 64
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L +E +K G ++AL++TPTRELALQ+ D LK ++K +V+
Sbjct: 65 TLCDEGKKKG------------------VKALVLTPTRELALQIKDELKRLSKYSKTKVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S E+Q + +K+ ++VVGTPGR+ + ++ + ++L + F VLDEAD M+
Sbjct: 107 PVYGGESIERQIKDIKSGVDIVVGTPGRVLDHIN---RRTLKLGGIDFLVLDEADEMLNM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ P +++QT++FSAT+
Sbjct: 164 GFIEDIETIMASTP------------------------EEKQTMLFSATM 189
>gi|149641853|ref|XP_001511203.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Ornithorhynchus
anatinus]
Length = 812
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 113/207 (54%), Gaps = 30/207 (14%)
Query: 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183
L L++TPTRELA+QV H+ VA+ ++ +VGGM+ +KQ+R+L RPE+V+ TPGR
Sbjct: 355 LLGLVLTPTRELAVQVKHHIDAVARFTGIKTALLVGGMAAQKQQRVLNRRPEIVIATPGR 414
Query: 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQ 243
LWEL+ HL L L V+DEADRM+E GHF EL +++ML N+ Q
Sbjct: 415 LWELIKEKHPHLSNLRRLRCLVIDEADRMVERGHFAELSQLLEML------NDSQYN--- 465
Query: 244 TCVTVSSLQRKKRQTLVFSATIALSAD-----FRKKLKHGSLKLKQSVNGLNSIETLSER 298
+RQT VFSAT+ L + F+KK KH ++ ++ L ++
Sbjct: 466 ----------PRRQTFVFSATLTLVHEVPARVFQKK-KHA-----HKLDTKTKLDQLVQK 509
Query: 299 AGMRANVAIVDLTNVSVLANKLEESFI 325
GMR ++DLT L E+ I
Sbjct: 510 IGMRGKPKVIDLTRKEATVEALTETRI 536
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 5/103 (4%)
Query: 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETG 82
L A+ T+ AW +L + +++++ LGF+ PTPIQ + A DI+GAAETG
Sbjct: 190 LSGSADGETDMSAWKDLFVPKPVLRALSSLGFEAPTPIQALTLTPAIRDNLDILGAAETG 249
Query: 83 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA-EKYAPKGHL 124
SGKTLAF +P++ +L R++ + KG++A P+G L
Sbjct: 250 SGKTLAFAIPMIHSVLRWRKEN----DTKGDKAGAPRVPEGSL 288
>gi|330831232|ref|YP_004394184.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
gi|423208115|ref|ZP_17194669.1| hypothetical protein HMPREF1169_00187 [Aeromonas veronii AER397]
gi|328806368|gb|AEB51567.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
B565]
gi|404619162|gb|EKB16078.1| hypothetical protein HMPREF1169_00187 [Aeromonas veronii AER397]
Length = 406
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/259 (35%), Positives = 143/259 (55%), Gaps = 54/259 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL LHP L+ S+ + + PT IQ+ IPAA G+D++ A+TGSGKTLAFGLP++Q
Sbjct: 3 FSELALHPDLLASLP-VTLQTPTRIQQLAIPAALA-GQDLLALAQTGSGKTLAFGLPLLQ 60
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL ++ L++ PTRELA+QVT LKE A+ + +R+V
Sbjct: 61 RL--------------------DPASSQVQGLVLVPTRELAIQVTAALKEGAEALGLRIV 100
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG++ E+Q+ L P+L+V TPGRL +L++ + ++ L L VLDEADR++E
Sbjct: 101 TLCGGVAQERQQAELALGPQLLVATPGRLRDLLT---QQVLGLDGLQLLVLDEADRLLEM 157
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275
G ++++++ +P RQTL+FSAT L A+ + L
Sbjct: 158 GFAPDIKALLGFIP------------------------ADRQTLLFSAT--LPAEL-ETL 190
Query: 276 KHGSLK--LKQSVNGLNSI 292
+G L+ + N LNS+
Sbjct: 191 ANGLLREPTRIEANPLNSV 209
>gi|257081095|ref|ZP_05575456.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
gi|256989125|gb|EEU76427.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
Length = 513
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 133/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+ ++ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP++
Sbjct: 3 FKELGLAPELLSAVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPMLN 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +A+ +G L+I PTRELA+Q + L + + +RV
Sbjct: 62 KI----------------DADNRVIQG----LVIAPTRELAIQTQEELFRLGRDKKIRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGRL + ++ + ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRLLDHIN---RRTLKLETVETLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P ++RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIISQVP------------------------EQRQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K+ +H +K K+
Sbjct: 195 FMKQPEHVKIKAKE 208
>gi|255971301|ref|ZP_05421887.1| helicase [Enterococcus faecalis T1]
gi|256617719|ref|ZP_05474565.1| helicase [Enterococcus faecalis ATCC 4200]
gi|256761605|ref|ZP_05502185.1| helicase [Enterococcus faecalis T3]
gi|256854305|ref|ZP_05559669.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
gi|256957293|ref|ZP_05561464.1| helicase [Enterococcus faecalis DS5]
gi|256959973|ref|ZP_05564144.1| helicase [Enterococcus faecalis Merz96]
gi|256964332|ref|ZP_05568503.1| helicase [Enterococcus faecalis HIP11704]
gi|257077733|ref|ZP_05572094.1| helicase [Enterococcus faecalis JH1]
gi|257083763|ref|ZP_05578124.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
gi|257086188|ref|ZP_05580549.1| helicase [Enterococcus faecalis D6]
gi|257089260|ref|ZP_05583621.1| helicase [Enterococcus faecalis CH188]
gi|257415413|ref|ZP_05592407.1| helicase [Enterococcus faecalis ARO1/DG]
gi|257418444|ref|ZP_05595438.1| helicase [Enterococcus faecalis T11]
gi|257421095|ref|ZP_05598085.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
gi|294781261|ref|ZP_06746607.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
gi|300859873|ref|ZP_07105961.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TUSoD Ef11]
gi|384517892|ref|YP_005705197.1| DEAD/DEAH box helicase [Enterococcus faecalis 62]
gi|397699239|ref|YP_006537027.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis D32]
gi|428766354|ref|YP_007152465.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis str. Symbioflor 1]
gi|430358725|ref|ZP_19425485.1| helicase [Enterococcus faecalis OG1X]
gi|430367031|ref|ZP_19427744.1| helicase [Enterococcus faecalis M7]
gi|255962319|gb|EET94795.1| helicase [Enterococcus faecalis T1]
gi|256597246|gb|EEU16422.1| helicase [Enterococcus faecalis ATCC 4200]
gi|256682856|gb|EEU22551.1| helicase [Enterococcus faecalis T3]
gi|256709865|gb|EEU24909.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
gi|256947789|gb|EEU64421.1| helicase [Enterococcus faecalis DS5]
gi|256950469|gb|EEU67101.1| helicase [Enterococcus faecalis Merz96]
gi|256954828|gb|EEU71460.1| helicase [Enterococcus faecalis HIP11704]
gi|256985763|gb|EEU73065.1| helicase [Enterococcus faecalis JH1]
gi|256991793|gb|EEU79095.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
gi|256994218|gb|EEU81520.1| helicase [Enterococcus faecalis D6]
gi|256998072|gb|EEU84592.1| helicase [Enterococcus faecalis CH188]
gi|257157241|gb|EEU87201.1| helicase [Enterococcus faecalis ARO1/DG]
gi|257160272|gb|EEU90232.1| helicase [Enterococcus faecalis T11]
gi|257162919|gb|EEU92879.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
gi|294451597|gb|EFG20053.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
gi|300850691|gb|EFK78440.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TUSoD Ef11]
gi|323480025|gb|ADX79464.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
gi|397335878|gb|AFO43550.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis D32]
gi|427184527|emb|CCO71751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis str. Symbioflor 1]
gi|429513550|gb|ELA03129.1| helicase [Enterococcus faecalis OG1X]
gi|429516845|gb|ELA06321.1| helicase [Enterococcus faecalis M7]
Length = 515
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 133/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+ ++ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP++
Sbjct: 3 FKELGLAPELLSAVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPMLN 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +A+ +G L+I PTRELA+Q + L + + +RV
Sbjct: 62 KI----------------DADNRVIQG----LVIAPTRELAIQTQEELFRLGRDKKIRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGRL + ++ + ++L T+ VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRGLKDRPHIVVGTPGRLLDHIN---RRTLKLETVETLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P ++RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIISQVP------------------------EQRQTLLFSATMPPAIKNIGVK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K+ +H +K K+
Sbjct: 195 FMKQPEHVKIKAKE 208
>gi|237748776|ref|ZP_04579256.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
gi|229380138|gb|EEO30229.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
Length = 465
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 132/241 (54%), Gaps = 42/241 (17%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L LHPL+ K++ + + +PTP+Q+ IPA +GKD++ +++TGSGKT AF LP +
Sbjct: 3 FEALGLHPLIQKALADIHYDKPTPVQEKAIPAGI-EGKDLLVSSQTGSGKTAAFMLPALH 61
Query: 96 RL----LEEREKAGKMLEEKGEEAE------KYAPKGHLRALIITPTRELALQVTDHLKE 145
R E+ +K K +K + A +Y P H + L++TPTRELA+Q+ ++
Sbjct: 62 RFASVPFEKSDK--KTFNQKRQAARAKGEKVRYEP-AHPKMLVLTPTRELAMQIVQSSED 118
Query: 146 VAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204
+ + + R V I+GGM KQ +LL PE++V TPGRL + M G+ + L
Sbjct: 119 YSAYLKHFRTVAILGGMPYPKQMQLLAKNPEILVATPGRLIDHMHSGK---IRFDQLEIL 175
Query: 205 VLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
VLDEADRM++ G ++++II P T RQT++FSAT
Sbjct: 176 VLDEADRMLDMGFIDDIETIIAATPET------------------------RQTMLFSAT 211
Query: 265 I 265
+
Sbjct: 212 L 212
>gi|356528665|ref|XP_003532920.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 36-like [Glycine
max]
Length = 587
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 141/291 (48%), Gaps = 45/291 (15%)
Query: 9 VVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA 68
+ SNG + + + A ++ + +A+ +L L +K+ LG + P P+Q+ CIP
Sbjct: 37 ITTTSNGERREDHSVETAATVAADAEAFGDLGLAEWAVKTCRELGMRRPRPVQRRCIPRV 96
Query: 69 AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128
+G+ ++G ETGSGKT AF LPI+ RL E P G + AL+
Sbjct: 97 L-EGRHVLGIDETGSGKTAAFALPILHRLAEH-------------------PFG-VFALV 135
Query: 129 ITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188
+TPTRELA Q+ + + + +++R+ +VGGM +Q + L ARP LV+ TPGR+ L+
Sbjct: 136 VTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLRQTKELAARPHLVIATPGRIHALL 195
Query: 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTV 248
F VLDEADR+++ G EL+ I LP
Sbjct: 196 RNNPDIPPVFSRTKFLVLDEADRVLDVGFQEELRFIFQCLP------------------- 236
Query: 249 SSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERA 299
+ RQ L FSAT + ++ + + ++ G ++ETL ++A
Sbjct: 237 -----ENRQNLFFSATTTSNLQKLRERYQDKMYVYEAYEGFKTVETLKQQA 282
>gi|313146179|ref|ZP_07808372.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
gi|423279249|ref|ZP_17258162.1| hypothetical protein HMPREF1203_02379 [Bacteroides fragilis HMW
610]
gi|313134946|gb|EFR52306.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
gi|404585418|gb|EKA90034.1| hypothetical protein HMPREF1203_02379 [Bacteroides fragilis HMW
610]
Length = 427
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L L ++K++ + G+ PTPIQ+ IP QGKD++G A+TG+GKT AF +PI+Q
Sbjct: 3 FENLNLIEPILKALRQEGYTSPTPIQEQSIPILL-QGKDLLGCAQTGTGKTAAFSIPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L + + G ++AL++TPTRELA+Q+ + + + ++
Sbjct: 62 KLYKTDHRKG------------------IKALVLTPTRELAIQIGESFEAYGRYTGLKHA 103
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ + Q L+ +++V TPGRL +L+S G V L++L FFVLDEADRM++
Sbjct: 104 VIFGGVGQKPQTDALRGGIQILVATPGRLLDLISQG---FVSLNSLDFFVLDEADRMLDM 160
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ +LP KRQTL FSAT+
Sbjct: 161 GFIHDIKRILKLLPT------------------------KRQTLFFSATM 186
>gi|114048383|ref|YP_738933.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113889825|gb|ABI43876.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 433
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 125/231 (54%), Gaps = 43/231 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ P ++++I G+++ TPIQ+ IPA +G+D++ +A+TG+GKT AF LPI+Q
Sbjct: 3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAI-RRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
KM+E E K + R LI+TPTRELA QV D+++ +K +N V+
Sbjct: 62 ----------KMVENPSETL-----KSNARVLILTPTRELAAQVADNVEAYSKYLNFSVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ E Q + LK +++V TPGRL E ++ + L ++ F VLDEADRM++
Sbjct: 107 TIYGGVKVETQAQKLKRGADIIVATPGRLLEHLTACN---LSLSSVDFLVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G ++Q I+ + KKRQ L+FSAT +
Sbjct: 164 GFNADIQKILQAV------------------------NKKRQNLLFSATFS 190
>gi|355670672|ref|ZP_09057419.1| hypothetical protein HMPREF9469_00456 [Clostridium citroniae
WAL-17108]
gi|354816109|gb|EHF00698.1| hypothetical protein HMPREF9469_00456 [Clostridium citroniae
WAL-17108]
Length = 569
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 141/250 (56%), Gaps = 50/250 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL+L ++++I +GF+E +PIQ IP A +G+D+IG A+TG+GKT AFG+P++Q
Sbjct: 6 FDELQLDERIIRAITEMGFEEASPIQAQAIPVAM-EGRDMIGQAQTGTGKTAAFGIPLLQ 64
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN-VRV 154
++ + +K L+A+I+ PTRELA+QV + ++ +AK ++ +V
Sbjct: 65 KVDPKVKK--------------------LQAVILLPTRELAIQVAEEMRRLAKFMHGTKV 104
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+PI GG KQ R LK ++VVGTPGR+ + M + +HT+ VLDEAD M+
Sbjct: 105 LPIYGGQDIVKQIRSLKDGTQVVVGTPGRVMDHMRRKTVKMDHVHTV---VLDEADEMLN 161
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRK 273
G ++++I+ LP ++RQTL+FSAT+ + AD K
Sbjct: 162 MGFLEDMETILSQLP------------------------EERQTLMFSATMPQAIADIAK 197
Query: 274 KLKHGSLKLK 283
K + + ++
Sbjct: 198 KFQDNPVTVR 207
>gi|212692656|ref|ZP_03300784.1| hypothetical protein BACDOR_02153 [Bacteroides dorei DSM 17855]
gi|237709374|ref|ZP_04539855.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
gi|265754557|ref|ZP_06089609.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
gi|345514379|ref|ZP_08793890.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4]
gi|423230441|ref|ZP_17216845.1| hypothetical protein HMPREF1063_02665 [Bacteroides dorei
CL02T00C15]
gi|423240913|ref|ZP_17222027.1| hypothetical protein HMPREF1065_02650 [Bacteroides dorei
CL03T12C01]
gi|423244150|ref|ZP_17225225.1| hypothetical protein HMPREF1064_01431 [Bacteroides dorei
CL02T12C06]
gi|212664734|gb|EEB25306.1| DEAD/DEAH box helicase [Bacteroides dorei DSM 17855]
gi|229436798|gb|EEO46875.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4]
gi|229456430|gb|EEO62151.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
gi|263234671|gb|EEZ20239.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
gi|392630976|gb|EIY24955.1| hypothetical protein HMPREF1063_02665 [Bacteroides dorei
CL02T00C15]
gi|392642704|gb|EIY36467.1| hypothetical protein HMPREF1064_01431 [Bacteroides dorei
CL02T12C06]
gi|392642975|gb|EIY36733.1| hypothetical protein HMPREF1065_02650 [Bacteroides dorei
CL03T12C01]
Length = 624
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 128/232 (55%), Gaps = 48/232 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + P ++K+I +G++ P P+Q+ IP G D++ A+TG+GKT AFGLP++Q
Sbjct: 4 FEELGVSPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLIQ 63
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN-VRV 154
++ E +K P+ ALI+ PTREL LQ+ L + +K I+ ++V
Sbjct: 64 KI----------------EVKKRVPQ----ALILCPTRELCLQIAGDLNDYSKYIDGLKV 103
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+P+ GG S E Q R+LKA ++V TPGRL +LM E+ + +L T++ V+DEAD M+
Sbjct: 104 LPVYGGSSIESQIRMLKAGVHIIVATPGRLIDLM---ERKVAKLETIADVVMDEADEMLN 160
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G + +I++ +P + R TL+FSAT++
Sbjct: 161 MGFTDSINAILEKVP------------------------EDRNTLMFSATMS 188
>gi|156502690|ref|YP_001428756.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|290953085|ref|ZP_06557706.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica URFT1]
gi|423050934|ref|YP_007009368.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica F92]
gi|156253293|gb|ABU61799.1| DEAD/DEAH box helicase family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|421951656|gb|AFX70905.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica F92]
Length = 441
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 127/231 (54%), Gaps = 44/231 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++L L+ L+ ++ + G+ +PTPIQ IP +G D++ +A+TG+GKT F LPI+Q
Sbjct: 3 FSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVL-KGNDVMASAQTGTGKTAGFTLPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RLL++ + A ++ LI+TPTRELA Q+ + ++ A ++R
Sbjct: 62 RLLDQPK----------------AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSA 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S Q L+ E+++ TPGRL +L S ++ V+ +L+ FVLDEADRM++
Sbjct: 106 VIFGGVSNNPQMMKLRKGVEILIATPGRLLDLYS---QNAVKFDSLNTFVLDEADRMLDM 162
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +L+ I ++LP KK QTL+FSAT +
Sbjct: 163 GFINDLKKIHNLLP------------------------KKLQTLMFSATFS 189
>gi|444335472|ref|YP_007391841.1| ATP-dependent RNA helicase DeaD [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
gi|444299851|gb|AGD98088.1| ATP-dependent RNA helicase DeaD [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
Length = 542
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 126/228 (55%), Gaps = 50/228 (21%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL-LE 99
L+ +++++ +G K PTPIQK IP GKD+I A+TG+GKT AFGLPI+Q++ LE
Sbjct: 10 LNDKIIQALEDIGIKTPTPIQKEVIPYLLKSGKDLIALAQTGTGKTAAFGLPIIQKINLE 69
Query: 100 EREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN-VRVVPIV 158
R P+ ALI+ PTREL +Q+T L ++ I+ ++++P+
Sbjct: 70 FR-----------------FPQ----ALILCPTRELCIQITRDLSRFSRYISLIKIIPLY 108
Query: 159 GGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 218
GG+S E Q L+ + ++VGTPGR+ +L+ + HL + + + VLDEAD M+ G
Sbjct: 109 GGVSIENQMLSLQKKTHIIVGTPGRIIDLIERKKLHLSD---IKYLVLDEADEMLNMGFK 165
Query: 219 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
EL SII LP KKRQ+L+FSAT++
Sbjct: 166 EELDSIIIKLP------------------------KKRQSLLFSATMS 189
>gi|83766036|dbj|BAE56179.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 856
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 131/257 (50%), Gaps = 53/257 (20%)
Query: 19 AEEELVSE---AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
A EE SE AE+S + ++ E L +++ + + F PTPIQ+ IP A GKDI
Sbjct: 322 APEEQTSEQSAAELSKK--SFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALL-GKDI 378
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTR 133
+G+A TGSGKT AF +PI++RLL + P+ R I+ PTR
Sbjct: 379 VGSAVTGSGKTAAFVVPILERLL-------------------FRPRKVPTSRVAILMPTR 419
Query: 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193
ELA+Q + ++A ++ +VGG S +QE +LK RP++++ TPGR + M
Sbjct: 420 ELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSAS 479
Query: 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQR 253
V+ TL VLDEADRM+E+G EL I+ +P
Sbjct: 480 FTVD--TLEILVLDEADRMLEDGFADELNEILTTIP------------------------ 513
Query: 254 KKRQTLVFSATIALSAD 270
K RQT++FSAT+ S D
Sbjct: 514 KSRQTMLFSATMTDSVD 530
>gi|150017770|ref|YP_001310024.1| DEAD/DEAH box helicase [Clostridium beijerinckii NCIMB 8052]
gi|149904235|gb|ABR35068.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 524
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 126/231 (54%), Gaps = 48/231 (20%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++EL L ++K+I +GF+EP+ IQ IP +G D+IG A+TG+GKTLAFG P++
Sbjct: 5 VFSELGLDENILKAIDAMGFEEPSKIQAEVIPVLL-EGHDVIGQAQTGTGKTLAFGAPVL 63
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
R+ + +G + ++I+TPTRELA+QV D L +AK +++
Sbjct: 64 SRI--------------------RSSEGKISSIILTPTRELAIQVNDELNRIAKFTKIKL 103
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+P+ GG ++Q L+ ++VVGTPGR+ +L+ + ++ L ++ F VLDEAD M+
Sbjct: 104 LPVYGGQPIDRQISALRRGIDIVVGTPGRVLDLI---RRKVLNLGSIKFLVLDEADEMLN 160
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II N Q RQT++FSAT+
Sbjct: 161 MGFIDDIEEII--------KNSNQD----------------RQTMLFSATM 187
>gi|424662680|ref|ZP_18099717.1| hypothetical protein HMPREF1205_03066 [Bacteroides fragilis HMW
616]
gi|404576370|gb|EKA81108.1| hypothetical protein HMPREF1205_03066 [Bacteroides fragilis HMW
616]
Length = 427
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L L ++K++ + G+ PTPIQ+ IP QGKD++G A+TG+GKT AF +PI+Q
Sbjct: 3 FENLNLIEPILKALRQEGYTSPTPIQEQSIPILL-QGKDLLGCAQTGTGKTAAFSIPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L + + G ++AL++TPTRELA+Q+ + + + ++
Sbjct: 62 KLYKTDHRKG------------------IKALVLTPTRELAIQIGESFEAYGRYTGLKHA 103
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ + Q L+ +++V TPGRL +L+S G V L++L FFVLDEADRM++
Sbjct: 104 VIFGGVGQKPQTDALRGGIQILVATPGRLLDLISQG---FVSLNSLDFFVLDEADRMLDM 160
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ +LP KRQTL FSAT+
Sbjct: 161 GFIHDIKRILKLLPT------------------------KRQTLFFSATM 186
>gi|238878470|gb|EEQ42108.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 581
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 131/232 (56%), Gaps = 23/232 (9%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
WNE ++ L+ I +LG++EPT +Q+A IP A + +D++G AETGSGKTLAF +P++
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKK-RDVVGVAETGSGKTLAFLIPVLN 228
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L E K + E P G LI+ PTRELALQ+T ++ K + +V+
Sbjct: 229 YILSIDENYLKYEKISNE------PVG----LILAPTRELALQITKEAEKFCKKLGYQVL 278
Query: 156 PIVGGMSTEKQ-ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
PI+GG + ++ + L+V TPGR L+ E+ +V+L V+DEADRMI+
Sbjct: 279 PIIGGHHYQDTINKIDQTGVHLIVATPGR---LVDSIERKIVDLSKCYCLVMDEADRMID 335
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G ++L ++D LP +Q + + +KR T++F+ATI+
Sbjct: 336 MGFEKDLNKVLDKLPT--------EKQLSSTIDGRIFHLEKRSTMMFTATIS 379
>gi|417974638|ref|ZP_12615445.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 25644]
gi|346328982|gb|EGX97294.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 25644]
Length = 497
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 127/230 (55%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+NEL L L+K+I R GF+E TPIQ+A IP G D+IG A+TG+GKT AFGLPI+Q
Sbjct: 3 FNELGLEEDLLKAIKRSGFEEATPIQEATIPLVL-AGIDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ + E H++A++++PTRELA+Q + L + K +V
Sbjct: 62 HVDVKEE--------------------HIQAIVVSPTRELAIQTQEELYRLGKDKRAKVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q +LLK P+++VGTPGRL + ++ + V+L + VLDEAD M++
Sbjct: 102 VVYGGADIRRQIKLLKHVPQILVGTPGRLLDHIN---RKTVDLSHVKTLVLDEADEMLDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++II +P ++RQTL+FSAT+
Sbjct: 159 GFLEDIEAIIKNVP------------------------EERQTLLFSATM 184
>gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
Length = 527
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTHKES--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum A2 str. Kyoto]
gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A2 str. Kyoto]
Length = 524
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 131/230 (56%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L L+ ++K+I +GF+ P+ IQ+ IP +G D+I A+TG+GKTLAFG P++
Sbjct: 6 FENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVL-EGADVIAQAQTGTGKTLAFGAPVIS 64
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L ++ +K G ++AL++TPTRELALQ+ D LK ++K +V+
Sbjct: 65 ALCDKEKKKG------------------VKALVLTPTRELALQIKDELKRLSKYSKTKVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S E+Q + +K+ ++VVGTPGR+ + ++ + ++L + F VLDEAD M+
Sbjct: 107 PVYGGESIERQIKDIKSGVDIVVGTPGRVLDHIN---RRTLKLGGIDFLVLDEADEMLNM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ E SE+ +QT++FSAT+
Sbjct: 164 GFIEDIETIM----------ESTSEE--------------KQTMLFSATM 189
>gi|404406153|ref|ZP_10997737.1| DNA/RNA helicase [Alistipes sp. JC136]
Length = 541
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 139/264 (52%), Gaps = 45/264 (17%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L L L+++I G+ +PTPIQ+ IP +G+D+ G A+TG+GKT AF LPI+Q
Sbjct: 3 FQDLGLSEPLLRAIGEKGYTDPTPIQQQAIPPVL-EGRDLQGCAQTGTGKTAAFTLPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L E G+ +RAL+ITPTRELA+Q+ + ++ A+ +++R
Sbjct: 62 LLAAEPAARGRR---------------EIRALVITPTRELAIQIDECCRDYARYLSIRHC 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG++ Q L+ +L+V TPGRL +L+ G + L + FFVLDEADRM++
Sbjct: 107 VIFGGVNQRPQVDALQRGVDLLVATPGRLLDLIGQG---YISLDKIRFFVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRKK 274
G +++ I+ +LP +RQTL FSAT+ A K
Sbjct: 164 GFIHDIRRILPLLPA------------------------QRQTLFFSATMPPDIAQLAAK 199
Query: 275 LKHGSLKLKQSVNGLNSIETLSER 298
+ H + L + +ET+S+R
Sbjct: 200 ILHDPV-LVTVTPPASVVETISQR 222
>gi|393787534|ref|ZP_10375666.1| hypothetical protein HMPREF1068_01946 [Bacteroides nordii
CL02T12C05]
gi|392658769|gb|EIY52399.1| hypothetical protein HMPREF1068_01946 [Bacteroides nordii
CL02T12C05]
Length = 422
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 124/230 (53%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L L ++K++ G+ PTPIQ+ IP QGKD++G A+TG+GKT AF +PI+Q
Sbjct: 3 FENLNLIEPILKALKEEGYSSPTPIQEQSIPVLL-QGKDLLGCAQTGTGKTAAFSIPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L + + G ++ALI+TPTRELA+Q+ + + K ++
Sbjct: 62 KLYKTDHRKG------------------IKALILTPTRELAIQIGECFEAYGKYTGLKHT 103
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ + Q L+ +++V TPGRL +L++ G + L TL FFVLDEADRM++
Sbjct: 104 VIFGGVGQKPQTDALRNGVQILVATPGRLLDLITQG---YISLKTLDFFVLDEADRMLDM 160
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ +LP +KRQTL FSAT+
Sbjct: 161 GFIHDIRRILKLLP------------------------QKRQTLFFSATM 186
>gi|384919775|ref|ZP_10019812.1| DEAD/DEAH box helicase-like protein [Citreicella sp. 357]
gi|384466377|gb|EIE50885.1| DEAD/DEAH box helicase-like protein [Citreicella sp. 357]
Length = 436
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 128/233 (54%), Gaps = 44/233 (18%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
FD ++ L L P L + + + GFKEPTPIQ IP A +G D++G A+TG+GKTLAFGLP
Sbjct: 2 FD-FDMLGLAPSLTEVLQKNGFKEPTPIQNQAIPLAL-EGHDVLGLAQTGTGKTLAFGLP 59
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
++ LL+E G+ A K A +AL++ PTREL Q+ D L+++ G +
Sbjct: 60 LIDGLLKE----------PGKPAPKCA-----KALVLAPTRELVNQIADSLRQLTDGSKL 104
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
RV +VGG S +Q L +++V TPGRL +LM G V+L T+ VLDEAD+M
Sbjct: 105 RVATVVGGQSINRQISFLSRGTDILVATPGRLIDLMDRGA---VDLSTVRQLVLDEADQM 161
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ G L+ I L G+ RQT++FSAT+
Sbjct: 162 LDLGFIHALRRIAPKL----GT--------------------PRQTMLFSATM 190
>gi|356555223|ref|XP_003545934.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 36-like [Glycine
max]
Length = 591
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 137/285 (48%), Gaps = 47/285 (16%)
Query: 17 DDAEEELVSEAEISTEFDA--WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKD 74
+D +E + A+ T+ DA + +L L +K+ LG + P +Q+ CIP +G+
Sbjct: 50 EDHPDETATVADTDTDADAETFGDLGLAEWAVKTCRELGMRRPRGVQRRCIPRVL-EGRH 108
Query: 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134
++G ETGSGKT AF LPI+ RL E P G + AL++TPTRE
Sbjct: 109 VLGVDETGSGKTAAFALPILHRLAEH-------------------PFG-VFALVVTPTRE 148
Query: 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
LA Q+ + + + +++R+ +VGGM +Q + L ARP LV+ TPGR+ L+
Sbjct: 149 LAFQLAEQFRALGSAVHLRITVVVGGMDMLRQAKELAARPHLVIATPGRIHALLRNNPDI 208
Query: 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 254
F VLDEADR+++ G EL+ I LP +
Sbjct: 209 PPVFSRTKFLVLDEADRVLDVGFQEELRFIFQCLP------------------------E 244
Query: 255 KRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERA 299
RQ L FSAT + + + + ++ G ++ETL ++A
Sbjct: 245 NRQNLFFSATTTSNLQKLRGRYQDKMYVYEAYEGFKTVETLKQQA 289
>gi|169853351|ref|XP_001833356.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Coprinopsis
cinerea okayama7#130]
gi|116505566|gb|EAU88461.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Coprinopsis
cinerea okayama7#130]
Length = 748
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 143/262 (54%), Gaps = 19/262 (7%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+W E + +++ I R+G+KEP+PIQ+ IP Q +D+IG AETGSGKT AF +P++
Sbjct: 322 SWEESDIPQVILDCIERIGYKEPSPIQRQAIPIGL-QNRDVIGIAETGSGKTAAFVIPML 380
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
+L L ++ P ALI+ PTRELA Q+ K+ A + +
Sbjct: 381 AFIL--------TLPIFTDDNRHLGPY----ALILAPTRELAQQIESETKKFATPLGYKC 428
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V IVGG + E+Q+ L+ E+++ TPGRL +++ E+H++ L + V+DEADRM+
Sbjct: 429 VSIVGGRAVEEQQFNLREGAEIIIATPGRLKDVL---ERHVLVLSQCRYIVMDEADRMVN 485
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD--FR 272
G +L I+D LP E Q E+ + + R T +FSAT+ + + R
Sbjct: 486 LGFEADLTFILDQLPTDTMEGEEQGEKMDVDGETMVKKGRTRVTTLFSATMPPAVERLAR 545
Query: 273 KKLKH-GSLKLKQSVNGLNSIE 293
K LK ++ + ++ ++++E
Sbjct: 546 KYLKKPATITIGEAGRAVDTVE 567
>gi|387824537|ref|YP_005824008.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
gi|332184003|gb|AEE26257.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
Length = 445
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 131/241 (54%), Gaps = 49/241 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++L L+PL+ ++ + G+ +PTPIQ IP +G D++ +A+TG+GKT F LPI+Q
Sbjct: 3 FSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVL-KGSDVMASAQTGTGKTAGFTLPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RLL++ + A ++ LI+TPTRELA Q+ + ++ A ++R
Sbjct: 62 RLLDQPK----------------AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSA 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG+S Q L+ E+++ TPGRL +L S ++ ++ +L+ FVLDEADRM++
Sbjct: 106 VVFGGVSINPQMMKLRKGVEILIATPGRLLDLYS---QNALKFDSLNTFVLDEADRMLDM 162
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +L+ I +LP KK QTL+FSAT + L+ D
Sbjct: 163 GFINDLKKIHKLLP------------------------KKLQTLMFSATFSPEIKNLAND 198
Query: 271 F 271
F
Sbjct: 199 F 199
>gi|395763064|ref|ZP_10443733.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 468
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 132/237 (55%), Gaps = 35/237 (14%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L LHP ++ ++ G+ PT +Q IPAA +G+D++ +++TGSGKT AF LP +
Sbjct: 3 FESLGLHPSIIAALTESGYTAPTAVQSQAIPAAI-EGRDLLVSSQTGSGKTAAFMLPSLH 61
Query: 96 RLLE-EREKAGKMLEEKGEEAEKYAPKGHLRA-----LIITPTRELALQVTDHLKEVAKG 149
+L E+ AGK ++ + + + +A L++TPTRELALQVT + + + G
Sbjct: 62 KLASAEQSAAGKTPNQEMQASRARGERPRFKAAQPKMLVLTPTRELALQVTTNTDKYSSG 121
Query: 150 IN-VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
I ++ V I+GGM KQ +LL PE++V TPGRL + M G+ ++ L VLDE
Sbjct: 122 IRRIKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMDSGK---IDFSQLEILVLDE 178
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
ADRM++ G +++ I++ P EG RQT++FSAT+
Sbjct: 179 ADRMLDMGFIDDIEKIVEATP------EG------------------RQTMLFSATL 211
>gi|354548342|emb|CCE45078.1| hypothetical protein CPAR2_700820 [Candida parapsilosis]
Length = 559
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 157/321 (48%), Gaps = 69/321 (21%)
Query: 12 VSNGPDDAEEELVSEAEISTEFD---------AWNELRLHPLLMKSIYRLGFKEPTPIQK 62
++N P + +E +S E++ E A++++ L P + + + F +PTPIQ
Sbjct: 115 LTNTPQSSIDEFLSTNEVTIEDSQHLNYRPILAFDQISLDPTIASKLTK--FAKPTPIQS 172
Query: 63 ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122
P GKD+IG AETGSGKT AFG+P + ++ E E G
Sbjct: 173 ISWPFLL-DGKDVIGVAETGSGKTFAFGVPAINNIITSGE------ENPG---------- 215
Query: 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPG 182
L L I+PTRELALQ+ D+L+E+ K ++ V I GG+S + Q ++ ++V TPG
Sbjct: 216 -LSVLCISPTRELALQIYDNLQELTKNTSISCVAIYGGVSKDDQINKIRQGANVIVATPG 274
Query: 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQT 242
RL +L++ G V+L ++++ VLDEADRM+E G +++ II TN N
Sbjct: 275 RLVDLINDGA---VDLSSINYLVLDEADRMLEKGFEEDIKHIIG---STNAHN------- 321
Query: 243 QTCVTVSSLQRKKRQTLVFSATIALSA-DFRKKLKHGSLKLKQSVNGLNSIETLSERAGM 301
RQTL+F+AT + H +KL T+ +R +
Sbjct: 322 -------------RQTLMFTATWPKEVRELANAFMHNPVKL-----------TIGDRDEL 357
Query: 302 RANVAIVDLTNVSVLANKLEE 322
AN I + V VL +K ++
Sbjct: 358 SANKRITQI--VEVLDDKFQK 376
>gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
Length = 501
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 125/230 (54%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L L+K+I R G++E TPIQ+ IP +G+D+IG A+TG+GKT AFGLPI+
Sbjct: 3 FSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVL-KGQDVIGQAQTGTGKTAAFGLPII- 60
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
E + P ++A+II+PTRELA+Q + L + K +VRV
Sbjct: 61 -----------------EHVDTDNPN--IQAIIISPTRELAIQTQEELFRLGKDKHVRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK P+++VGTPGRL + ++ +H V+L + VLDEAD M+
Sbjct: 102 VVYGGADIRRQIRNLKQHPQILVGTPGRLRDHLN---RHTVKLDHIKTLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++IID P RQTL+FSAT+
Sbjct: 159 GFLDDIEAIIDQTPA------------------------DRQTLLFSATM 184
>gi|449275677|gb|EMC84446.1| putative ATP-dependent RNA helicase DDX23 [Columba livia]
Length = 795
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 144/242 (59%), Gaps = 19/242 (7%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
+I +W + L P +++ I + G+KEPTPIQ+ IP Q +DIIG AETGSGKT
Sbjct: 380 GKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKT 438
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF +P++ + K+ ++ EE+++ P A+I+ PTRELA Q+ + +
Sbjct: 439 AAFLIPLLVWIT----TLPKI--DRIEESDQ-GPY----AIILAPTRELAQQIEEETIKF 487
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
K + +R V ++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VL
Sbjct: 488 GKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVL 544
Query: 207 DEADRMIENGHFRELQSIIDMLPMTN---GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
DEADRMI+ G ++Q I++ +P+TN ++E + + + S + K RQT++F+A
Sbjct: 545 DEADRMIDMGFEPDVQKILEHMPVTNQKPDTDEAEDPE-KMLANFESGKHKYRQTVMFTA 603
Query: 264 TI 265
T+
Sbjct: 604 TM 605
>gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 530
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 133/232 (57%), Gaps = 49/232 (21%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ E+ L +++++ +GF+EP+PIQKA IP A G D+IG A+TG+GKT AFG+PI
Sbjct: 8 SFGEISLSKQVLQALSEMGFEEPSPIQKAAIPVAM-DGVDLIGQAQTGTGKTAAFGIPI- 65
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVR 153
EK PK ++ALI+TPTRELA+QV++ + ++ K +++
Sbjct: 66 --------------------CEKVNPKFQAVQALILTPTRELAVQVSEEISKIGKYRHIK 105
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+PI GG S ++Q R L+ ++VVGTPGR+ + ++ G ++L + VLDEAD M+
Sbjct: 106 PLPIYGGQSIDRQIRALRFGSQVVVGTPGRILDHLNRGT---LKLQYVKMVVLDEADEML 162
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G ++++I+ +P +++RQ ++FSAT+
Sbjct: 163 DMGFVEDIETILKQVP-----------------------KEERQVMLFSATM 191
>gi|336310719|ref|ZP_08565690.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
gi|335865801|gb|EGM70809.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
Length = 432
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 122/231 (52%), Gaps = 43/231 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ P ++++I G+++ TPIQ+ IPA +G+D++ +A+TG+GKT AF LPI+Q
Sbjct: 3 FESFSFSPEILRAISDCGYQQMTPIQQQAIPAI-RRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
KM+E E K + R LI+TPTRELA QV D++ K +N V+
Sbjct: 62 ----------KMVENPSETL-----KSNARVLILTPTRELAAQVADNVTAYCKYLNFSVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ E Q + LK +++V TPGRL E ++ + L + F VLDEADRM++
Sbjct: 107 TIYGGVKVETQAQKLKRGADVIVATPGRLLEHLTACN---LSLSNVDFLVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G ++Q I+ + KKRQ L+FSAT +
Sbjct: 164 GFSADIQKILQAV------------------------NKKRQNLLFSATFS 190
>gi|282599579|ref|ZP_05971084.2| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
gi|282568585|gb|EFB74120.1| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
Length = 457
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 129/232 (55%), Gaps = 42/232 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++++L L+ ++++I LG+ PTPIQ+ IPA G D++ +A+TG+GKT F LPI+
Sbjct: 10 SFSDLALNEEILRAINELGYDSPTPIQQQAIPAVL-AGNDLLASAQTGTGKTAGFTLPIL 68
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q+L++ + +RALI+TPTRELA QV +++KE ++ +N+R
Sbjct: 69 QKLVDAPRSGNN--------------RRPIRALILTPTRELAAQVAENVKEYSRHLNIRS 114
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG+S Q L++ ++++ TPGRL +L ++ V+L + VLDEADRM++
Sbjct: 115 FVVFGGVSINPQMMKLRSGVDVLIATPGRLLDLE---HQNAVDLSQVEILVLDEADRMLD 171
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +++ +I LP KKRQ L+FSAT +
Sbjct: 172 MGFIHDIRRVITKLP------------------------KKRQNLLFSATFS 199
>gi|390339167|ref|XP_789805.2| PREDICTED: probable ATP-dependent RNA helicase DDX23
[Strongylocentrotus purpuratus]
Length = 785
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 137/231 (59%), Gaps = 16/231 (6%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+E L + I +G+K+P+PIQ+ IP Q +D+IG AETGSGKT AF +P++
Sbjct: 358 WDEYGLPKHITDIIAEVGYKDPSPIQRQAIPIGL-QNRDVIGVAETGSGKTAAFLIPLLV 416
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ K+ ++ ++ YA +I+ PTRELA Q+ + + K + +R V
Sbjct: 417 WI----STLPKIERDEDKDQGPYA-------IILAPTRELAQQIEEETIKFGKPLGIRTV 465
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I+GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VLDEADRMI+
Sbjct: 466 TIIGGISREDQGFKLRLGCEIVIATPGRLIDVLEN--RYLV-LCQCTYVVLDEADRMIDM 522
Query: 216 GHFRELQSIIDMLPMTNGSNEG-QSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++Q I++ LP+TN + ++E + + + ++K RQT++F+AT+
Sbjct: 523 GFEPDVQKILEYLPVTNQKPDSEEAEDSAKLLANFASKKKYRQTVMFTATM 573
>gi|410900007|ref|XP_003963488.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Takifugu
rubripes]
Length = 802
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 133/232 (57%), Gaps = 17/232 (7%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L +++ I + G+KEPTPIQ+ IP Q +DIIG AETGSGKT AF +P++
Sbjct: 374 WKEYSLPDHILEVIDKCGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAAFLIPLLV 432
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ K ++ E P A+I+ PTRELA Q+ + + K + +R V
Sbjct: 433 -WITTLPKIDRI------EDSDQGPY----AVILAPTRELAQQIEEETIKFGKPLGIRTV 481
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VLDEADRMI+
Sbjct: 482 AVIGGISREDQGFRLRMGCEIVIATPGRLIDVLDN--RYLV-LSRCTYVVLDEADRMIDM 538
Query: 216 GHFRELQSIIDMLPMTNG--SNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++Q I++ +P+TN E + + + S + K RQT++F+AT+
Sbjct: 539 GFEPDVQKILEFIPVTNQKPDTEEAEDPDKMMMNFESGKNKYRQTVMFTATM 590
>gi|212558407|gb|ACJ30861.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
piezotolerans WP3]
Length = 432
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 123/235 (52%), Gaps = 51/235 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ P ++++I G+++ TPIQ+ IPA +G+D++ +A+TG+GKT AF LPI+Q
Sbjct: 3 FESFSFAPEILRAISECGYQKMTPIQQQAIPAV-RRGQDVLASAQTGTGKTAAFSLPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++L+ + + RALI+TPTRELA Q+ D++ + AK + V VV
Sbjct: 62 KMLDN---------------PSATQRSNARALILTPTRELAAQIADNINDYAKYLEVNVV 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV----ELHTLSFFVLDEADR 211
IVGG+ + Q LK ++++ TPGRL E H+V L + F VLDEADR
Sbjct: 107 TIVGGVKMDSQATKLKRGADIIIATPGRLLE-------HIVACNLSLSNVDFLVLDEADR 159
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
M++ G ++Q I+ + KRQ L+FSAT +
Sbjct: 160 MLDMGFSADIQKILQAV------------------------NSKRQNLMFSATFS 190
>gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
2048]
gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
gi|423485535|ref|ZP_17462217.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BtB2-4]
gi|423491260|ref|ZP_17467904.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER057]
gi|423501944|ref|ZP_17478561.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER074]
gi|423596874|ref|ZP_17572899.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD048]
gi|423602239|ref|ZP_17578239.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD078]
gi|423665253|ref|ZP_17640392.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM022]
gi|423671681|ref|ZP_17646685.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM034]
gi|423672515|ref|ZP_17647454.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM062]
gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
2048]
gi|401151508|gb|EJQ58957.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER074]
gi|401161714|gb|EJQ69077.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER057]
gi|401218539|gb|EJR25216.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD048]
gi|401226140|gb|EJR32681.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD078]
gi|401290577|gb|EJR96269.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM022]
gi|401291502|gb|EJR97173.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM034]
gi|401311621|gb|EJS16907.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM062]
gi|402441494|gb|EJV73449.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BtB2-4]
Length = 538
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTNKEA--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|226315226|ref|YP_002775122.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
gi|226098176|dbj|BAH46618.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
100599]
Length = 513
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+N+ LH +++++ +GF+E T IQ +P A QG+D+IG A+TG+GKT AFG+P+++
Sbjct: 4 FNDFGLHHSIVRALSNMGFEEATAIQDQTVPVAL-QGRDLIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
R+ E G+++ +++TPTRELA+QV + + ++A+ N+ +
Sbjct: 63 RMDET--------------------SGNIQGVVLTPTRELAVQVAEEINKIAQFKNISAL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q + LK RP+++V TPGR + M + + L + VLDEAD M+
Sbjct: 103 PIYGGQDITRQIKALKKRPQIIVATPGRFMDHM---RRRTIRLDAIEVVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ +P + RQTL+FSAT+
Sbjct: 160 GFIDDIKEILKEVP------------------------ESRQTLLFSATM 185
>gi|164428960|ref|XP_001728501.1| hypothetical protein NCU11175 [Neurospora crassa OR74A]
gi|157072353|gb|EDO65410.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 857
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 124/241 (51%), Gaps = 48/241 (19%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E ++ E+ L +++ + +GF +PTPIQ IP + GKD++G A TGSGKT AF +
Sbjct: 291 EMSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISL-MGKDVVGGAVTGSGKTAAFVV 349
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELALQVTDHLKEVAKG 149
PI++RLL Y PK R +I+TPTRELA+Q ++A
Sbjct: 350 PILERLL-------------------YRPKKVPTTRVVILTPTRELAIQCHAVAVKLASH 390
Query: 150 INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209
+++ VGG+S + QE L+ RP++V+ TPGR + M V+ T+ VLDEA
Sbjct: 391 TDIKFCLAVGGLSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVD--TIEILVLDEA 448
Query: 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269
DRM+E+G EL I+ LP K RQT++FSAT+ S
Sbjct: 449 DRMLEDGFADELNEILTTLP------------------------KSRQTMLFSATMTSSV 484
Query: 270 D 270
D
Sbjct: 485 D 485
>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 570
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 37/230 (16%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L P L++++ LG++EPTPIQ+A IP G D++G A TG+GKT AF LP++
Sbjct: 18 FSELGLRPELLQALAELGYEEPTPIQRAAIPPLL-DGCDVVGQAATGTGKTAAFALPVLH 76
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
R+ + E+GE + A+++ PTRELA QV + ++ + + VRV+
Sbjct: 77 RIRDG---------ERGERGARAQRGAAPSAVVLVPTRELAAQVCEAMRRYGRRLGVRVL 127
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S +Q R L+ ++VV TPGR + +S G ++L L VLDEAD M++
Sbjct: 128 PVYGGQSMSRQLRALEEGVDVVVATPGRALDHLSRGS---LDLSALRMVVLDEADEMLDM 184
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++ +I++ P RQT++FSAT+
Sbjct: 185 GFAEDIDTILERTP------------------------DDRQTMLFSATM 210
>gi|353237187|emb|CCA69166.1| related to DRS1-RNA helicase of the DEAD box family [Piriformospora
indica DSM 11827]
Length = 767
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 123/232 (53%), Gaps = 42/232 (18%)
Query: 39 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLL 98
+ L +MKS+ L F PTPIQ A IP A GKDI+G A TGSGKT AF +PI++RLL
Sbjct: 181 MNLSRPIMKSLTSLSFHTPTPIQAATIPVALL-GKDIVGNAVTGSGKTAAFMIPILERLL 239
Query: 99 EEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIV 158
+KG+ A R L++ PTRELA+Q + ++A ++++ +V
Sbjct: 240 ---------YRQKGKNA------AATRCLVLVPTRELAVQCFEVGTKLAAHTDIQMSLVV 284
Query: 159 GGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 218
GG+S + QE L+++P+LV+ TPGRL + + L L VLDEADRM+ +G
Sbjct: 285 GGLSLKAQEATLRSKPDLVIATPGRLIDHLRNS--PTFNLDALDVLVLDEADRMLSDGFA 342
Query: 219 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
EL+ I+ P + RQT++FSAT+ S D
Sbjct: 343 DELEEIVKSCP------------------------RSRQTMLFSATMTDSVD 370
>gi|449052728|ref|ZP_21732359.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae hvKP1]
gi|448875863|gb|EMB10868.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae hvKP1]
Length = 451
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 131/232 (56%), Gaps = 42/232 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L+P +++++ G+ EPTPIQ+ IPA QG+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVL-QGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
QRL++ A KG +RALI+TPTRELA QV +++++ +K +N+R
Sbjct: 61 QRLIQNEPHA------KGRRP--------VRALILTPTRELAAQVGENVRDYSKYLNIRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q L+ +++V TPGRL +L ++ V L + VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDILVATPGRLLDLE---HQNAVSLDKVEILVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +++ ++ LP +RQ L+FSAT +
Sbjct: 164 MGFIHDIRRVLAKLPA------------------------RRQNLLFSATFS 191
>gi|423139268|ref|ZP_17126906.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379051822|gb|EHY69713.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 453
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 143/252 (56%), Gaps = 47/252 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L+P ++++I G++EPTPIQ+ IPA +G+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q L+ ++ A KG +RALI+TPTRELA Q+ +++++ +K +N+R
Sbjct: 61 QHLITQQPHA------KGRRP--------VRALILTPTRELAAQIGENVRDYSKYLNIRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q L+ +++V TPGRL +L ++ V+L + VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLE---HQNAVKLDQIEILVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR-- 272
G +++ ++ LP KRQ L+FSAT S D +
Sbjct: 164 MGFIHDIRRVLAKLPA------------------------KRQNLLFSAT--FSDDIKAL 197
Query: 273 -KKLKHGSLKLK 283
+KL H L+++
Sbjct: 198 AEKLLHNPLEIE 209
>gi|374328740|ref|YP_005078924.1| DEAD/DEAH box helicase [Pseudovibrio sp. FO-BEG1]
gi|359341528|gb|AEV34902.1| DEAD/DEAH box helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 453
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 126/235 (53%), Gaps = 46/235 (19%)
Query: 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
T+FD + + +KS G+ EPTPIQ+ IP GKD++G A+TG+GKT AF
Sbjct: 2 TDFDKLGVAKPFQIALKS---KGYSEPTPIQENAIPYIL-DGKDLLGLAQTGTGKTAAFA 57
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150
+P++QRLLE R +A APK +R+LI+TPTRELA Q+T ++K A
Sbjct: 58 VPLLQRLLESRYRA--------------APK-SVRSLILTPTRELADQITKNIKAYAGRT 102
Query: 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210
+ +VGG+ Q R L+ +++V TPGRL +L K+ V L FVLDEAD
Sbjct: 103 KMYTSCVVGGVPFPPQFRALQRGLDVLVATPGRLLDLH---RKNGVSFDELEIFVLDEAD 159
Query: 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+M++ G EL+ I +LP KKRQTL FSAT+
Sbjct: 160 QMLDLGFIAELEEIAYLLP------------------------KKRQTLFFSATM 190
>gi|283784562|ref|YP_003364427.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
gi|282948016|emb|CBG87580.1| putative ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
Length = 451
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 143/252 (56%), Gaps = 47/252 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L+P ++++I G++EPTP+Q+ IPA +G+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLNPEILRAIAEQGYREPTPVQQQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q L+ ++ A KG +RALI+TPTRELA Q+ +++++ +K +N+R
Sbjct: 61 QHLITQQPHA------KGRRP--------VRALILTPTRELAAQIGENVRDYSKYLNIRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q L+ +++V TPGRL +L ++ V+L + VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLE---HQNAVKLDQIEILVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK- 273
G +++ ++ LP KRQ L+FSAT S D ++
Sbjct: 164 MGFIHDIRRVLAKLPA------------------------KRQNLLFSAT--FSDDIKRL 197
Query: 274 --KLKHGSLKLK 283
KL H L+++
Sbjct: 198 AEKLLHNPLEIE 209
>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 493
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 130/244 (53%), Gaps = 42/244 (17%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
+S+ ++ +++ L P ++K++ G+ PTPIQ IP G+D++GAA+TG+
Sbjct: 1 MSDTAVTPSTATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVL-AGRDVMGAAQTGT 59
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDH 142
GKT +F LPI+QRLL + + +P H +RALI+TPTRELA QV +
Sbjct: 60 GKTASFSLPIIQRLLPQASTSA-------------SPARHPVRALILTPTRELADQVAAN 106
Query: 143 LKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202
++ AK +R + GG+ Q L+ E+++ TPGRL + + ++ L +
Sbjct: 107 VQSYAKHTALRSAVVFGGVDMNPQSEQLRRGVEILIATPGRLLDHV---QQKTANLGQVQ 163
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262
VLDEADRM++ G +LQ I+++LP K+RQTL+FS
Sbjct: 164 ILVLDEADRMLDMGFLPDLQRILNLLP------------------------KERQTLLFS 199
Query: 263 ATIA 266
AT +
Sbjct: 200 ATFS 203
>gi|152969387|ref|YP_001334496.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|365139153|ref|ZP_09345663.1| ATP-dependent RNA helicase rhlE [Klebsiella sp. 4_1_44FAA]
gi|378977819|ref|YP_005225960.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386033962|ref|YP_005953875.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae KCTC 2242]
gi|419974710|ref|ZP_14490127.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419977806|ref|ZP_14493104.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419987058|ref|ZP_14502183.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991473|ref|ZP_14506438.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997938|ref|ZP_14512730.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420003806|ref|ZP_14518449.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420006904|ref|ZP_14521400.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420012540|ref|ZP_14526853.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420020791|ref|ZP_14534976.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420024066|ref|ZP_14538080.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031055|ref|ZP_14544878.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420038792|ref|ZP_14552435.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420041896|ref|ZP_14555391.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420046990|ref|ZP_14560308.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420056136|ref|ZP_14569296.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420061472|ref|ZP_14574460.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420064158|ref|ZP_14576968.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420069526|ref|ZP_14582181.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420078157|ref|ZP_14590617.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420084520|ref|ZP_14596776.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|424829756|ref|ZP_18254484.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|424934331|ref|ZP_18352703.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425077527|ref|ZP_18480630.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425088160|ref|ZP_18491253.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425090700|ref|ZP_18493785.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428940153|ref|ZP_19013245.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae VA360]
gi|150954236|gb|ABR76266.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|339761090|gb|AEJ97310.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae KCTC 2242]
gi|363654512|gb|EHL93410.1| ATP-dependent RNA helicase rhlE [Klebsiella sp. 4_1_44FAA]
gi|364517230|gb|AEW60358.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397345127|gb|EJJ38254.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397345977|gb|EJJ39096.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397353346|gb|EJJ46420.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397361555|gb|EJJ54216.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397363734|gb|EJJ56371.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397368249|gb|EJJ60856.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397381416|gb|EJJ73587.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397385751|gb|EJJ77846.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397387462|gb|EJJ79487.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397399449|gb|EJJ91101.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397400795|gb|EJJ92433.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397403895|gb|EJJ95434.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397417455|gb|EJK08620.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397417749|gb|EJK08912.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397420966|gb|EJK12007.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397430627|gb|EJK21316.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397433767|gb|EJK24410.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397442774|gb|EJK33116.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397445167|gb|EJK35418.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397450132|gb|EJK40246.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|405593236|gb|EKB66688.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405602292|gb|EKB75434.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405613678|gb|EKB86407.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407808518|gb|EKF79769.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|414707181|emb|CCN28885.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|426302754|gb|EKV64945.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae VA360]
Length = 451
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 131/232 (56%), Gaps = 42/232 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L+P +++++ G+ EPTPIQ+ IPA QG+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVL-QGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
QRL++ A KG +RALI+TPTRELA QV +++++ +K +N+R
Sbjct: 61 QRLIQNEPHA------KGRRP--------VRALILTPTRELAAQVGENVRDYSKYLNIRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q L+ +++V TPGRL +L ++ V L + VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDILVATPGRLLDLE---HQNAVSLDKVEILVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +++ ++ LP +RQ L+FSAT +
Sbjct: 164 MGFIHDIRRVLAKLPA------------------------RRQNLLFSATFS 191
>gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
Length = 515
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 125/233 (53%), Gaps = 48/233 (20%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
+ + +L + +++++ +GF+EPTPIQ+ IP A GKD+IG A+TG+GKT AFGLP
Sbjct: 2 LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAM-SGKDMIGQAQTGTGKTAAFGLP 60
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+++R+ G E H++ +I++PTRELA+QV + L ++A+ N+
Sbjct: 61 VLERV-------------DGNER-------HVQVVILSPTRELAIQVAEELNKMAQYTNI 100
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+PI GG +Q R LK P+++V TPGRL + M G ++ + VLDEAD M
Sbjct: 101 TALPIYGGQDINRQFRALKKNPQIIVATPGRLMDHMDRGS---IKFDHVKVVVLDEADEM 157
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G ++ I+ +P + QTL+FSAT+
Sbjct: 158 LNMGFVDDINKILGAIP------------------------EDHQTLLFSATM 186
>gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
Length = 515
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 125/233 (53%), Gaps = 48/233 (20%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
+ + +L + +++++ +GF+EPTPIQ+ IP A GKD+IG A+TG+GKT AFGLP
Sbjct: 2 LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAM-SGKDMIGQAQTGTGKTAAFGLP 60
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
+++R+ G E H++ +I++PTRELA+QV + L ++A+ N+
Sbjct: 61 VLERV-------------DGNER-------HVQVVILSPTRELAIQVAEELNKMAQYTNI 100
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+PI GG +Q R LK P+++V TPGRL + M G ++ + VLDEAD M
Sbjct: 101 TALPIYGGQDINRQFRALKKNPQIIVATPGRLMDHMDRGS---IKFDHVKVVVLDEADEM 157
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G ++ I+ +P + QTL+FSAT+
Sbjct: 158 LNMGFVDDINKILGAIP------------------------EDHQTLLFSATM 186
>gi|142982611|sp|P0C2N8.1|DRS1_NEUCR RecName: Full=ATP-dependent RNA helicase drs-1
Length = 829
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 124/241 (51%), Gaps = 48/241 (19%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E ++ E+ L +++ + +GF +PTPIQ IP + GKD++G A TGSGKT AF +
Sbjct: 291 EMSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISL-MGKDVVGGAVTGSGKTAAFVV 349
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELALQVTDHLKEVAKG 149
PI++RLL Y PK R +I+TPTRELA+Q ++A
Sbjct: 350 PILERLL-------------------YRPKKVPTTRVVILTPTRELAIQCHAVAVKLASH 390
Query: 150 INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209
+++ VGG+S + QE L+ RP++V+ TPGR + M V+ T+ VLDEA
Sbjct: 391 TDIKFCLAVGGLSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVD--TIEILVLDEA 448
Query: 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269
DRM+E+G EL I+ LP K RQT++FSAT+ S
Sbjct: 449 DRMLEDGFADELNEILTTLP------------------------KSRQTMLFSATMTSSV 484
Query: 270 D 270
D
Sbjct: 485 D 485
>gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 860
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 126/241 (52%), Gaps = 48/241 (19%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
E+ + + EL L L K++ +LG+ +PTPIQ IP + GKDI+ +A TGSGKT
Sbjct: 228 EVVMDLPTFEELHLSRPLQKAVAKLGYTQPTPIQAKAIPLILN-GKDILASATTGSGKTA 286
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL--RALIITPTRELALQVTDHLKE 145
AF LPI++RLL Y H R LI+ PTRELALQ +
Sbjct: 287 AFILPILERLL-------------------YRDATHRVSRVLIVLPTRELALQCHSVFES 327
Query: 146 VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
+A+ NV+ +VGG+S + QE L+ RP++++ TPGRL + + H V L + V
Sbjct: 328 LAQFTNVQSCLVVGGLSNKVQEHELRKRPDVIIATPGRLIDHLLNA--HDVGLEDIEILV 385
Query: 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
LDEADR+++ G EL +++ P +G RQTL+FSAT+
Sbjct: 386 LDEADRLLDMGFKDELNRVVESCP--DG----------------------RQTLLFSATL 421
Query: 266 A 266
+
Sbjct: 422 S 422
>gi|398816782|ref|ZP_10575424.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398031995|gb|EJL25360.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 520
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+N+ LH +++++ +GF+E T IQ +P A QG+D+IG A+TG+GKT AFG+P+++
Sbjct: 4 FNDFGLHHSIVRALSNMGFEEATAIQDQTVPVAL-QGRDLIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RL E G+++ +++TPTRELA+QV + + ++A+ N+ +
Sbjct: 63 RLDET--------------------SGNIQGVVLTPTRELAVQVAEEINKIAQFKNISAL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q + LK RP+++V TPGR + M + + L + +LDEAD M+
Sbjct: 103 PIYGGQDITRQIKALKKRPQIIVATPGRFMDHM---RRKTIRLDAIEVVILDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ +P RQTL+FSAT+
Sbjct: 160 GFIDDIKEILKEVP------------------------DNRQTLLFSATM 185
>gi|333370948|ref|ZP_08462918.1| DEAD-box ATP-dependent RNA helicase YdbR [Desmospora sp. 8437]
gi|332976898|gb|EGK13720.1| DEAD-box ATP-dependent RNA helicase YdbR [Desmospora sp. 8437]
Length = 291
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 126/230 (54%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++ L L+MK I +GF+EP+PIQ CIPA +G+D+IG A+TG+GKT AFG+P+++
Sbjct: 4 FDSFELDALIMKGIREMGFEEPSPIQAECIPAVL-RGEDVIGQAQTGTGKTAAFGIPLLE 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ K ++A+++ PTRELA+QV++ L+++ + V+ +
Sbjct: 63 HVDPGSRK--------------------VKAVVLAPTRELAIQVSEELRKIGRAKRVKTL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q + LK ++V+GTPGR+ + + G + L + VLDEAD M++
Sbjct: 103 PIYGGQPIGRQIKALKQGVQVVIGTPGRMLDHLRRGT---LRLDDVEMLVLDEADEMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++++D LP + RQ L+FSATI
Sbjct: 160 GFIDDIEAVMDHLP------------------------ENRQLLLFSATI 185
>gi|52144993|ref|YP_081836.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
gi|81689748|sp|Q63GX5.1|CSHA_BACCZ RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|51978462|gb|AAU20012.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
Length = 528
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTHKES--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|423398827|ref|ZP_17376028.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-1]
gi|423409729|ref|ZP_17386878.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-3]
gi|401646011|gb|EJS63645.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-1]
gi|401652844|gb|EJS70396.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-3]
Length = 531
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTNKEA--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|395215483|ref|ZP_10400949.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
gi|394455827|gb|EJF10233.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
Length = 476
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 44/230 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L ++K++ G+ +PTPIQ+ IP G D++G A+TG+GKT AF +P++Q
Sbjct: 3 FSELNLIDPILKALQAEGYTQPTPIQEQAIPHLL-AGTDVLGCAQTGTGKTAAFAIPVLQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L ++ +A + + LI+TPTRELA+Q+ + K VR
Sbjct: 62 MLHNQKNRASNTI----------------KTLILTPTRELAIQINESFAAYGKNTGVRHT 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S Q + LK ++++ TPGRL +L+ G + L + FFVLDEADRM++
Sbjct: 106 VIFGGVSQHAQVQTLKRGVDVLIATPGRLLDLIGQG---FISLKHVEFFVLDEADRMLDM 162
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ II MLP K+RQ+L FSAT+
Sbjct: 163 GFIHDVKRIIPMLP------------------------KQRQSLFFSATM 188
>gi|381188403|ref|ZP_09895965.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
gi|379650191|gb|EIA08764.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
Length = 428
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 133/239 (55%), Gaps = 46/239 (19%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++N L L L+K+I + G+ P+PIQ+ IP +GKD++ +A+TG+GKT F LPI+
Sbjct: 2 SFNSLGLSDALLKAISKKGYTTPSPIQQKAIPPIL-EGKDVLASAQTGTGKTAGFTLPIL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q L E GK L + +RALI+TPTRELA Q+ ++KE ++ +++R
Sbjct: 61 QILAE-----GKHLSHR-----------PIRALILTPTRELAAQILANIKEYSEFLDLRS 104
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
I GG++ + Q L+ +++V TPGRL +L + G L+ L + VLDEADRM++
Sbjct: 105 TVIFGGVNQKPQVAQLRQGIDILVATPGRLIDLQNQG---LITLSKVEILVLDEADRMLD 161
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
G R+++ I+ +LP+ KRQ L+FSAT S D +K
Sbjct: 162 MGFLRDIERIMKVLPV------------------------KRQNLMFSAT--FSKDIKK 194
>gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
Length = 536
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 133/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+ ++ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP++
Sbjct: 24 FKELGLAPELLSAVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPMLN 82
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +A+ +G L+I PTRELA+Q + L + + +RV
Sbjct: 83 KI----------------DADNRVIQG----LVIAPTRELAIQTQEELFRLGRDKKIRVQ 122
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGRL + ++ + ++L T+ VLDEAD M+
Sbjct: 123 AVYGGADIGRQIRGLKDRPHIVVGTPGRLLDHIN---RRTLKLETVETLVLDEADEMLNM 179
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P ++RQTL+FSAT+ +
Sbjct: 180 GFLEDIEKIISQVP------------------------EQRQTLLFSATMPPAIKNIGVK 215
Query: 271 FRKKLKHGSLKLKQ 284
F K+ +H +K K+
Sbjct: 216 FMKQPEHVKIKAKE 229
>gi|354557785|ref|ZP_08977043.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550579|gb|EHC20016.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 530
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 141/253 (55%), Gaps = 52/253 (20%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ E+ L +++S+ +GF+EP+PIQK IP A +G D+IG A+TG+GKT AFG+PI+
Sbjct: 7 SFGEIALSKQVLQSLSEMGFEEPSPIQKEAIPLAL-EGVDLIGQAQTGTGKTAAFGIPII 65
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVR 153
EK PK ++A+I++PTRELA+QV++ L ++ K +V+
Sbjct: 66 ---------------------EKVNPKFQAVQAIILSPTRELAVQVSEELAKIGKYRHVK 104
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
++PI GG S ++Q R L+ ++VVGTPGR+ + + G ++L + VLDEAD M+
Sbjct: 105 ILPIYGGQSIDRQIRALRFGSQVVVGTPGRILDHLKRGT---LKLQYVKMVVLDEADEML 161
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
+ G +++ I+ +P + RQ ++FSAT+ L+ +
Sbjct: 162 DMGFVEDIEHILKEVPPED-----------------------RQVMLFSATMPLAI---R 195
Query: 274 KLKHGSLKLKQSV 286
KL +K +SV
Sbjct: 196 KLAQHYMKDPKSV 208
>gi|254578822|ref|XP_002495397.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
gi|238938287|emb|CAR26464.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
Length = 750
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 125/234 (53%), Gaps = 45/234 (19%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
F+ +N L L ++K++ LG+ P+PIQ A IP A GKDII A TGSGKT AF +P
Sbjct: 236 FNNFNSLSLSRPVLKALGDLGYATPSPIQGATIPIALL-GKDIIAGAVTGSGKTAAFMIP 294
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
I++RL+ K A R +++ PTRELA+QV D K++ K +N
Sbjct: 295 IIERLI-----------------YKPAKVASTRVIVLAPTRELAIQVADVGKKLGKYVNG 337
Query: 153 RVVPI-VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
I VGG++ +QE++LK RP++V+ TPGR + + V+ ++ V+DEADR
Sbjct: 338 LTFGIAVGGLNLRQQEQILKTRPDIVIATPGRFIDHIRNSSSFNVD--SVEVLVIDEADR 395
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
M+E G E+ I+ +LP KRQT++FSAT+
Sbjct: 396 MLEEGFQDEINEIMHLLP------------------------SKRQTMLFSATM 425
>gi|30260423|ref|NP_842800.1| DEAD/DEAH box helicase [Bacillus anthracis str. Ames]
gi|47525504|ref|YP_016853.1| DEAD/DEAH box helicase [Bacillus anthracis str. 'Ames Ancestor']
gi|47567484|ref|ZP_00238196.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
gi|49183266|ref|YP_026518.1| DEAD/DEAH box helicase [Bacillus anthracis str. Sterne]
gi|49479130|ref|YP_034574.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|65317675|ref|ZP_00390634.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
str. A2012]
gi|118475995|ref|YP_893146.1| DEAD/DEAH box helicase [Bacillus thuringiensis str. Al Hakam]
gi|165871548|ref|ZP_02216194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167634144|ref|ZP_02392466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|167640350|ref|ZP_02398615.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|170687759|ref|ZP_02878974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|170707898|ref|ZP_02898348.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|177653423|ref|ZP_02935633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190567376|ref|ZP_03020290.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|196035956|ref|ZP_03103357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196041156|ref|ZP_03108452.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
gi|196046212|ref|ZP_03113439.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|218901440|ref|YP_002449274.1| ATP-dependent RNA helicase [Bacillus cereus AH820]
gi|225862289|ref|YP_002747667.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|227812915|ref|YP_002812924.1| ATP-dependent RNA helicase [Bacillus anthracis str. CDC 684]
gi|228912978|ref|ZP_04076622.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228925493|ref|ZP_04088587.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228931740|ref|ZP_04094641.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228983493|ref|ZP_04143703.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229089370|ref|ZP_04220646.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
gi|229119903|ref|ZP_04249162.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
gi|229154007|ref|ZP_04282136.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
4342]
gi|229182634|ref|ZP_04309880.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
gi|229604746|ref|YP_002864874.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
gi|254686589|ref|ZP_05150448.1| DEAD/DEAH box helicase [Bacillus anthracis str. CNEVA-9066]
gi|254723571|ref|ZP_05185358.1| DEAD/DEAH box helicase [Bacillus anthracis str. A1055]
gi|254734933|ref|ZP_05192645.1| DEAD/DEAH box helicase [Bacillus anthracis str. Western North
America USA6153]
gi|254739718|ref|ZP_05197411.1| DEAD/DEAH box helicase [Bacillus anthracis str. Kruger B]
gi|254754911|ref|ZP_05206946.1| DEAD/DEAH box helicase [Bacillus anthracis str. Vollum]
gi|301051970|ref|YP_003790181.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
gi|376264267|ref|YP_005116979.1| cold-shock DEAD-box protein A [Bacillus cereus F837/76]
gi|386734107|ref|YP_006207288.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
H9401]
gi|81696998|sp|Q6HPE6.1|CSHA_BACHK RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|81715465|sp|Q81VG0.1|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|134039177|sp|A0R8U6.1|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|30253744|gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Ames]
gi|47500652|gb|AAT29328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. 'Ames Ancestor']
gi|47555886|gb|EAL14225.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
gi|49177193|gb|AAT52569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Sterne]
gi|49330686|gb|AAT61332.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|118415220|gb|ABK83639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
thuringiensis str. Al Hakam]
gi|164712652|gb|EDR18183.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167511752|gb|EDR87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|167530458|gb|EDR93173.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|170127256|gb|EDS96133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|170668286|gb|EDT19034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|172081463|gb|EDT66536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190561503|gb|EDV15474.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|195991325|gb|EDX55292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196022957|gb|EDX61637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|196028091|gb|EDX66702.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
gi|218539043|gb|ACK91441.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH820]
gi|225790192|gb|ACO30409.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|227005398|gb|ACP15141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. CDC 684]
gi|228600842|gb|EEK58416.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
gi|228629528|gb|EEK86226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
4342]
gi|228663560|gb|EEL19141.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
gi|228693970|gb|EEL47657.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
gi|228776237|gb|EEM24593.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228827920|gb|EEM73653.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228834238|gb|EEM79781.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228846673|gb|EEM91681.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|229269154|gb|ACQ50791.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
gi|300374139|gb|ADK03043.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
gi|364510067|gb|AEW53466.1| Cold-shock DEAD-box protein A [Bacillus cereus F837/76]
gi|384383959|gb|AFH81620.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
H9401]
Length = 528
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTHKES--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|423421599|ref|ZP_17398688.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-1]
gi|401097261|gb|EJQ05289.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-1]
Length = 532
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTRKEA--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|229015638|ref|ZP_04172628.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
gi|229021830|ref|ZP_04178406.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
gi|423393316|ref|ZP_17370542.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-3]
gi|228739470|gb|EEL89890.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
gi|228745658|gb|EEL95670.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
gi|401630235|gb|EJS48042.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-3]
Length = 530
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTRKEA--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
gi|423422457|ref|ZP_17399488.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-2]
gi|423433901|ref|ZP_17410882.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus
BAG4X12-1]
gi|423507747|ref|ZP_17484314.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HD73]
gi|449086891|ref|YP_007419332.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401119847|gb|EJQ27653.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-2]
gi|401128051|gb|EJQ35755.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus
BAG4X12-1]
gi|402443146|gb|EJV75059.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HD73]
gi|449020648|gb|AGE75811.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 525
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTHKES--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|206972279|ref|ZP_03233226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
gi|218235804|ref|YP_002365074.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
gi|228919172|ref|ZP_04082546.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|229148635|ref|ZP_04276889.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
gi|365163836|ref|ZP_09359936.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus sp.
7_6_55CFAA_CT2]
gi|423415878|ref|ZP_17392998.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3O-2]
gi|423428328|ref|ZP_17405332.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4O-1]
gi|423578634|ref|ZP_17554745.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD014]
gi|423638228|ref|ZP_17613880.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD156]
gi|206732853|gb|EDZ50028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
gi|218163761|gb|ACK63753.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
gi|228634893|gb|EEK91468.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
gi|228840483|gb|EEM85750.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|363614642|gb|EHL66125.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus sp.
7_6_55CFAA_CT2]
gi|401094716|gb|EJQ02789.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3O-2]
gi|401126650|gb|EJQ34386.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4O-1]
gi|401220492|gb|EJR27125.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD014]
gi|401271731|gb|EJR77736.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD156]
Length = 533
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTHKES--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|423525845|ref|ZP_17502297.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA4-10]
gi|401165636|gb|EJQ72953.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA4-10]
Length = 533
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTNKEA--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|157146569|ref|YP_001453888.1| ATP-dependent RNA helicase RhlE [Citrobacter koseri ATCC BAA-895]
gi|157083774|gb|ABV13452.1| hypothetical protein CKO_02330 [Citrobacter koseri ATCC BAA-895]
Length = 454
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 143/252 (56%), Gaps = 47/252 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L+P ++++I G++EPTPIQ+ IPA +G+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q L+ ++ A KG +RALI+TPTRELA Q+ +++++ +K +N+R
Sbjct: 61 QHLITQQPHA------KGRRP--------VRALILTPTRELAAQIGENVRDYSKYLNIRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q L+ +++V TPGRL +L ++ V+L + VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLE---HQNAVKLDQIEILVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR-- 272
G +++ ++ LP KRQ L+FSAT S D +
Sbjct: 164 MGFIHDIRRVLAKLP------------------------PKRQNLLFSAT--FSDDIKAL 197
Query: 273 -KKLKHGSLKLK 283
+KL H L+++
Sbjct: 198 AEKLLHNPLEIE 209
>gi|415939512|ref|ZP_11555529.1| ATP-dependent RNA helicase, partial [Herbaspirillum frisingense
GSF30]
gi|407759311|gb|EKF69022.1| ATP-dependent RNA helicase, partial [Herbaspirillum frisingense
GSF30]
Length = 397
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 140/258 (54%), Gaps = 39/258 (15%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L L+P ++K++ G+ PTP+Q+ IPAA G+D++ +++TGSGKT AF LP +
Sbjct: 3 FEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAI-SGQDLLVSSQTGSGKTAAFMLPSLH 61
Query: 96 RL--LEEREKAGKMLEEKGE------EAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
+L L + +A + ++ + E +Y P + L++TPTRELALQVT +
Sbjct: 62 QLADLPQAPQAARTPNQERQATRARGERPRYQP-AQPKMLVLTPTRELALQVTTATDKYG 120
Query: 148 KGIN-VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
+ VRVV I+GGM KQ +LL PE++V TPGRL + M G+ ++ L VL
Sbjct: 121 SYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGK---IDFSQLQILVL 177
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI- 265
DEADRM++ G +++ I+ P T RQT++FSAT+
Sbjct: 178 DEADRMLDMGFIDDIEKIVAATPTT------------------------RQTMLFSATLD 213
Query: 266 ALSADFRKKLKHGSLKLK 283
+ + K++ + L ++
Sbjct: 214 GVVGNMAKRITNNPLTIQ 231
>gi|346322626|gb|EGX92225.1| DEAD/DEAH box helicase, putative [Cordyceps militaris CM01]
Length = 744
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 129/231 (55%), Gaps = 17/231 (7%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L P L+ I +G++EPTPIQ+A IP A +D+IG A TGSGKT AF LP++
Sbjct: 295 WKESGLPPRLLAIIEHVGYEEPTPIQRAAIPIALL-ARDLIGVAVTGSGKTAAFLLPLLV 353
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ + L GE + P ALI+ PTREL Q+ K+ + + R V
Sbjct: 354 YISD--------LPPLGETNKNDGPY----ALILAPTRELVQQIEKEAKKFGEPLGFRCV 401
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
IVGG S E+Q L+ E++V TPGRL + + E+ L+ L + ++DEADRMI+
Sbjct: 402 SIVGGHSLEEQAYALRNGAEIIVATPGRLVDCI---ERRLLVLSQCCYVIMDEADRMIDM 458
Query: 216 GHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G + +I+D LP++N + ++E + + + RQT++F+AT+
Sbjct: 459 GFEEPVNTILDALPVSNEKPDTDEAEDGRLMQRYVGEKDRYRQTMMFTATM 509
>gi|373950432|ref|ZP_09610393.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|386323730|ref|YP_006019847.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|333817875|gb|AEG10541.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|373887032|gb|EHQ15924.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 433
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 122/231 (52%), Gaps = 43/231 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ P ++++I G+++ TPIQ+ IPA +G+D++ +A+TG+GKT AF LPI+Q
Sbjct: 3 FESFSFSPEILRAISDCGYQQMTPIQQQAIPAI-RRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
KM+E E K + R LI+TPTRELA QV D++ K +N V+
Sbjct: 62 ----------KMVENPSETL-----KSNARVLILTPTRELAAQVADNVTAYCKYLNFSVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ E Q + LK +++V TPGRL E ++ + L + F VLDEADRM++
Sbjct: 107 TIYGGVKIETQAQKLKRGADVIVATPGRLLEHLTACN---LSLSNVDFLVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G ++Q I+ + KKRQ L+FSAT +
Sbjct: 164 GFSADIQKILQAV------------------------NKKRQNLLFSATFS 190
>gi|42779348|ref|NP_976595.1| DEAD/DEAH box helicase [Bacillus cereus ATCC 10987]
gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217957807|ref|YP_002336351.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus cereus
AH187]
gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1]
gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST26]
gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
gi|375282337|ref|YP_005102772.1| ATP-dependent RNA helicase [Bacillus cereus NC7401]
gi|384178162|ref|YP_005563924.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|402554174|ref|YP_006595445.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
gi|423357187|ref|ZP_17334786.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus IS075]
gi|423376168|ref|ZP_17353482.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus AND1407]
gi|423572348|ref|ZP_17548555.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A12]
gi|423577914|ref|ZP_17554033.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-D12]
gi|423607941|ref|ZP_17583834.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD102]
gi|81700027|sp|Q73EU1.1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
ATCC 10987]
gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH187]
gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1]
gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST26]
gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358350860|dbj|BAL16032.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NC7401]
gi|401075815|gb|EJP84184.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus IS075]
gi|401089159|gb|EJP97331.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus AND1407]
gi|401197715|gb|EJR04643.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A12]
gi|401203960|gb|EJR10791.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-D12]
gi|401239515|gb|EJR45942.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD102]
gi|401795384|gb|AFQ09243.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
Length = 525
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTHKES--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51]
gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 537
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 133/232 (57%), Gaps = 49/232 (21%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ E+ L +++++ +GF+EP+PIQKA IP A G D+IG A+TG+GKT AFG+PI
Sbjct: 15 SFGEISLSKQVLQALSEMGFEEPSPIQKAAIPVAMD-GLDLIGQAQTGTGKTAAFGIPI- 72
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVR 153
EK PK ++ALI+TPTRELA+QV++ + ++ K +++
Sbjct: 73 --------------------CEKINPKFQAVQALILTPTRELAVQVSEEISKIGKYRHIK 112
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+PI GG S ++Q R L+ ++VVGTPGR+ + ++ G ++L + VLDEAD M+
Sbjct: 113 PLPIYGGQSIDRQIRALRFGSQVVVGTPGRILDHLNRGT---LKLQYVKMVVLDEADEML 169
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G ++++I+ +P +++RQ ++FSAT+
Sbjct: 170 DMGFVDDIETILKQVP-----------------------KEERQVMLFSATM 198
>gi|239626754|ref|ZP_04669785.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239516900|gb|EEQ56766.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 572
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 141/250 (56%), Gaps = 50/250 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL+L ++++I +GF+E +PIQ IP A +G+D+IG A+TG+GKT AFG+P++Q
Sbjct: 6 FDELQLDERIIRAITEMGFEEASPIQAQAIPVAM-EGRDMIGQAQTGTGKTAAFGIPLLQ 64
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN-VRV 154
++ + +K L+A+I+ PTRELA+QV + ++ +AK ++ +V
Sbjct: 65 KVDPKVKK--------------------LQAIILLPTRELAIQVAEEMRRLAKFMHGTKV 104
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+PI GG KQ R LK ++VVGTPGR+ + M + +HT+ VLDEAD M+
Sbjct: 105 LPIYGGQDIVKQIRSLKDGTQIVVGTPGRVMDHMRRKTVKMDHVHTV---VLDEADEMLN 161
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRK 273
G ++++I+ LP ++RQTL+FSAT+ + AD +
Sbjct: 162 MGFLEDMETILSQLP------------------------EERQTLMFSATMPQAIADIAR 197
Query: 274 KLKHGSLKLK 283
K + + ++
Sbjct: 198 KFQDDPVTVR 207
>gi|156844737|ref|XP_001645430.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
gi|160380651|sp|A7TJM9.1|DRS1_VANPO RecName: Full=ATP-dependent RNA helicase DRS1
gi|156116092|gb|EDO17572.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
Length = 752
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 129/248 (52%), Gaps = 46/248 (18%)
Query: 19 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
A E SEA ST +N L L ++K + LG+ +P+PIQ A IP GKDII
Sbjct: 217 APESESSEA-TSTVHSTFNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLS-GKDIIAG 274
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 138
A TGSGKT AF +PI++RLL K A R +++TPTRELA+Q
Sbjct: 275 AVTGSGKTAAFMIPIIERLL-----------------YKPAKVASTRVIVLTPTRELAIQ 317
Query: 139 VTDHLKEVAKGINVRVVPI-VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
+ D K++ K ++ + VGG++ +QE+ LK RP++V+ TPGR + + V+
Sbjct: 318 IADVGKKIGKYVSGLTFGLAVGGLNLRQQEQELKTRPDIVIATPGRFIDHVRNSSSFNVD 377
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
++ V+DEADRM+E G EL I+ +LP KRQ
Sbjct: 378 --SVEVLVMDEADRMLEEGFQEELNEILTLLP------------------------SKRQ 411
Query: 258 TLVFSATI 265
TL+FSAT+
Sbjct: 412 TLLFSATM 419
>gi|449663558|ref|XP_002166443.2| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Hydra
magnipapillata]
Length = 632
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 131/231 (56%), Gaps = 16/231 (6%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W + L ++ I LG+ +PTPIQ+ IP +DIIG AETGSGKT AF +P++
Sbjct: 206 WRDSSLPNDILDVILSLGYTDPTPIQRQAIPIGL-MNRDIIGIAETGSGKTAAFVIPLLV 264
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ E + + + G A+I+ PTRELA Q+ + + AK + +R V
Sbjct: 265 WITGLPESDRQSVSDNGP-----------FAIILAPTRELAQQIEEETIKFAKKLGIRTV 313
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
++GG+S E Q L+ E+V+ TPGRL +++ ++LV L S+ V+DEADRMI+
Sbjct: 314 AVIGGLSREDQGFQLRLGCEIVIATPGRLIDVLEN--RYLV-LSQCSYVVMDEADRMIDM 370
Query: 216 GHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++Q I++ LP+TN + ++E S + K RQT++F+AT+
Sbjct: 371 GFEPDVQKILEHLPVTNIKPDTEEAEDVNVIAKNYSSKDKYRQTVMFTATM 421
>gi|29375434|ref|NP_814588.1| DEAD/DEAH box helicase [Enterococcus faecalis V583]
gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX0104]
gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
HH22]
gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX1322]
gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
ATCC 29200]
gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis R712]
gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis S613]
gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
gi|384512540|ref|YP_005707633.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
gi|422686078|ref|ZP_16744289.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
gi|422689795|ref|ZP_16747899.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
gi|422692134|ref|ZP_16750156.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
gi|422694449|ref|ZP_16752440.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
gi|422696585|ref|ZP_16754542.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
gi|422699736|ref|ZP_16757597.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
gi|422703461|ref|ZP_16761283.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
gi|422707307|ref|ZP_16765002.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
gi|422711628|ref|ZP_16768555.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
gi|422713329|ref|ZP_16770079.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
gi|422717645|ref|ZP_16774329.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
gi|422720386|ref|ZP_16777004.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
gi|422722778|ref|ZP_16779327.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
gi|422726299|ref|ZP_16782750.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
gi|422729834|ref|ZP_16786229.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
gi|422731038|ref|ZP_16787419.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
gi|422735346|ref|ZP_16791620.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
gi|422738996|ref|ZP_16794181.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
gi|424670976|ref|ZP_18107991.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
599]
gi|424676386|ref|ZP_18113259.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV103]
gi|424679344|ref|ZP_18116169.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV116]
gi|424682393|ref|ZP_18119164.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV129]
gi|424686115|ref|ZP_18122786.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV25]
gi|424689249|ref|ZP_18125835.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV31]
gi|424692828|ref|ZP_18129304.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV37]
gi|424696170|ref|ZP_18132529.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV41]
gi|424699415|ref|ZP_18135635.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV62]
gi|424703855|ref|ZP_18139979.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV63]
gi|424705957|ref|ZP_18141971.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV65]
gi|424716207|ref|ZP_18145521.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV68]
gi|424719149|ref|ZP_18148371.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV72]
gi|424722510|ref|ZP_18151560.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV73]
gi|424726330|ref|ZP_18154998.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV81]
gi|424734532|ref|ZP_18163044.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV85]
gi|424746519|ref|ZP_18174750.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV93]
gi|424757333|ref|ZP_18185087.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
R508]
gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis V583]
gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX0104]
gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
HH22]
gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
ATCC 29200]
gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX1322]
gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis R712]
gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis S613]
gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
gi|402356926|gb|EJU91644.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV103]
gi|402357040|gb|EJU91755.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV116]
gi|402359536|gb|EJU94161.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
599]
gi|402367689|gb|EJV02027.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV129]
gi|402368059|gb|EJV02386.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV25]
gi|402368986|gb|EJV03284.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV31]
gi|402376373|gb|EJV10318.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV62]
gi|402376784|gb|EJV10706.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV37]
gi|402378414|gb|EJV12272.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV41]
gi|402383780|gb|EJV17363.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV63]
gi|402388552|gb|EJV21987.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV68]
gi|402388773|gb|EJV22199.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV65]
gi|402397103|gb|EJV30139.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV72]
gi|402399841|gb|EJV32699.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV81]
gi|402401968|gb|EJV34706.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV73]
gi|402407406|gb|EJV39938.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
R508]
gi|402407938|gb|EJV40436.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV85]
gi|402409246|gb|EJV41678.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV93]
Length = 536
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 133/254 (52%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L+ ++ R GF+E TPIQ IP A GKD+IG A+TG+GKT AFGLP++
Sbjct: 24 FKELGLAPELLSAVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPMLN 82
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +A+ +G L+I PTRELA+Q + L + + +RV
Sbjct: 83 KI----------------DADNRVIQG----LVIAPTRELAIQTQEELFRLGRDKKIRVQ 122
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP +VVGTPGRL + ++ + ++L T+ VLDEAD M+
Sbjct: 123 AVYGGADIGRQIRGLKDRPHIVVGTPGRLLDHIN---RRTLKLETVETLVLDEADEMLNM 179
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P ++RQTL+FSAT+ +
Sbjct: 180 GFLEDIEKIISQVP------------------------EQRQTLLFSATMPPAIKNIGVK 215
Query: 271 FRKKLKHGSLKLKQ 284
F K+ +H +K K+
Sbjct: 216 FMKQPEHVKIKAKE 229
>gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1]
gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1]
Length = 520
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 118/195 (60%), Gaps = 24/195 (12%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+ +L L ++K I +G+ P+PIQ+ IP +G+DIIG A+TG+GKTLAFG ++
Sbjct: 5 TFKDLGLSSDVLKGIEMMGYVSPSPIQEKSIPVLL-EGQDIIGQAQTGTGKTLAFGSVLL 63
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
++ +K GK H++ALI++PTRELALQ+ + LK + K N+ +
Sbjct: 64 SKI----QKEGK----------------HVKALILSPTRELALQIHEELKRIGKCTNLSI 103
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V + GG E+Q + LK ++VVGTPGR+ +LM + +++++ + F VLDEAD M+
Sbjct: 104 VSVFGGSDIERQIKDLKRGADIVVGTPGRVQDLM---RRRVLKINNIDFMVLDEADEMLN 160
Query: 215 NGHFRELQSIIDMLP 229
G ++++I+ P
Sbjct: 161 MGFVEDIETILKATP 175
>gi|296808427|ref|XP_002844552.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
gi|238844035|gb|EEQ33697.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
Length = 807
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 48/238 (20%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ L L +++ + +GF PTPIQ+ IP A GKD++G A TGSGKT AF +PI+
Sbjct: 294 SFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALL-GKDVVGGAVTGSGKTAAFIVPIL 352
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELALQVTDHLKEVAKGINV 152
+RLL Y P+ R I+ PTRELA+Q + ++A ++
Sbjct: 353 ERLL-------------------YRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDI 393
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+VGG S +QE +LK RP++++ TPGR + M V+ TL +LDEADRM
Sbjct: 394 TFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVD--TLEILILDEADRM 451
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
+E+G EL I+ +P K RQT++FSAT+ S D
Sbjct: 452 LEDGFAEELNEILTTIP------------------------KSRQTMLFSATMTSSVD 485
>gi|89256570|ref|YP_513932.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica LVS]
gi|115315000|ref|YP_763723.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|422938927|ref|YP_007012074.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica FSC200]
gi|89144401|emb|CAJ79691.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica LVS]
gi|115129899|gb|ABI83086.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|407294078|gb|AFT92984.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica FSC200]
Length = 441
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 127/231 (54%), Gaps = 44/231 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++L L+ L+ ++ + G+ +PTPIQ IP +G D++ +A+TG+GKT F LPI+Q
Sbjct: 3 FSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVL-KGNDVMASAQTGTGKTAGFTLPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RLL++ + A ++ LI+TPTRELA Q+ + ++ A ++R
Sbjct: 62 RLLDQPK----------------AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSA 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S Q L+ E+++ TPGRL +L S ++ V+ +L+ FVLDEADRM++
Sbjct: 106 VIFGGVSINPQMMKLRKGVEILIATPGRLLDLYS---QNAVKFDSLNTFVLDEADRMLDM 162
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +L+ I ++LP KK QTL+FSAT +
Sbjct: 163 GFINDLKKIHNLLP------------------------KKLQTLMFSATFS 189
>gi|160883549|ref|ZP_02064552.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483]
gi|237722794|ref|ZP_04553275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|293371813|ref|ZP_06618223.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
gi|299147643|ref|ZP_07040707.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
gi|336416998|ref|ZP_08597329.1| hypothetical protein HMPREF1017_04437 [Bacteroides ovatus
3_8_47FAA]
gi|423291591|ref|ZP_17270438.1| hypothetical protein HMPREF1069_05481 [Bacteroides ovatus
CL02T12C04]
gi|156110962|gb|EDO12707.1| DEAD/DEAH box helicase [Bacteroides ovatus ATCC 8483]
gi|229447316|gb|EEO53107.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|292633265|gb|EFF51836.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
gi|298514430|gb|EFI38315.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
gi|335937042|gb|EGM98952.1| hypothetical protein HMPREF1017_04437 [Bacteroides ovatus
3_8_47FAA]
gi|392662714|gb|EIY56270.1| hypothetical protein HMPREF1069_05481 [Bacteroides ovatus
CL02T12C04]
Length = 374
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 129/230 (56%), Gaps = 43/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL + ++K+I G+ PTPIQ IPAA + +DI+G A+TG+GKT +F +PI+Q
Sbjct: 3 FKELNITEPILKAIEEKGYAVPTPIQGEAIPAALAK-RDILGCAQTGTGKTASFAIPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L +E A + +G ++ALI+TPTRELALQ+++ + + AK VR
Sbjct: 62 HLQMNKEAA----KCRG-----------IKALILTPTRELALQISECINDYAKYTQVRHG 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG++ Q +L +++V TPGRL +LM+ G HL ++ +FVLDEADRM++
Sbjct: 107 VIFGGVNQRPQVDMLHKGIDILVATPGRLLDLMNQGHIHLDKIQ---YFVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ LP K++QTL FSAT+
Sbjct: 164 GFIHDIKRILPKLP------------------------KEKQTLFFSATM 189
>gi|114765123|ref|ZP_01444268.1| putative ATP-dependent RNA helicase protein [Pelagibaca bermudensis
HTCC2601]
gi|114542527|gb|EAU45553.1| putative ATP-dependent RNA helicase protein [Roseovarius sp.
HTCC2601]
Length = 430
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 126/233 (54%), Gaps = 44/233 (18%)
Query: 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92
FD ++ L L P L +++ R GF EPTPIQ IP A +G D++G A+TG+GKTLAFGLP
Sbjct: 2 FD-FDMLGLAPTLSEALKRNGFSEPTPIQNQAIPLAL-EGHDVLGLAQTGTGKTLAFGLP 59
Query: 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152
++ LL + K APK ++AL++ PTREL Q+ D L+++ G +
Sbjct: 60 LIDGLLAQ--------------PGKPAPK-TVKALVLAPTRELVNQIADSLRQLTDGTKL 104
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
RV +VGG S +Q L +++V TPGRL +LM ++ V+L T+ VLDEAD+M
Sbjct: 105 RVGTVVGGQSINRQINFLSRGTDILVATPGRLIDLM---DRKAVDLSTVRQLVLDEADQM 161
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ G L+ I L RQT++FSAT+
Sbjct: 162 LDMGFIHALRRIAPQL------------------------GTPRQTMLFSATM 190
>gi|119578414|gb|EAW58010.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_a [Homo
sapiens]
Length = 634
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 143/242 (59%), Gaps = 19/242 (7%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
+I +W + L P +++ I + G+KEPTPIQ+ IP Q +DIIG AETGSGKT
Sbjct: 198 GKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKT 256
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF +P++ + K ++ EE+++ P A+I+ PTRELA Q+ + +
Sbjct: 257 AAFLIPLLV-WITTLPKIDRI-----EESDQ-GPY----AIILAPTRELAQQIEEETIKF 305
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
K + +R V ++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VL
Sbjct: 306 GKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVL 362
Query: 207 DEADRMIENGHFRELQSIIDMLPMTN---GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263
DEADRMI+ G ++Q I++ +P++N ++E + + + S + K RQT++F+A
Sbjct: 363 DEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPE-KMLANFESGKHKYRQTVMFTA 421
Query: 264 TI 265
T+
Sbjct: 422 TM 423
>gi|423074659|ref|ZP_17063384.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
gi|361854479|gb|EHL06545.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
Length = 537
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 133/232 (57%), Gaps = 49/232 (21%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ E+ L +++++ +GF+EP+PIQKA IP A G D+IG A+TG+GKT AFG+PI
Sbjct: 15 SFGEISLSKQVLQALSEMGFEEPSPIQKAAIPVAMD-GLDLIGQAQTGTGKTAAFGIPI- 72
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVR 153
EK PK ++ALI+TPTRELA+QV++ + ++ K +++
Sbjct: 73 --------------------CEKINPKFQAVQALILTPTRELAVQVSEEISKIGKYRHIK 112
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+PI GG S ++Q R L+ ++VVGTPGR+ + ++ G ++L + VLDEAD M+
Sbjct: 113 PLPIYGGQSIDRQIRALRFGSQVVVGTPGRILDHLNRGT---LKLQYVKIVVLDEADEML 169
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ G ++++I+ +P +++RQ ++FSAT+
Sbjct: 170 DMGFVDDIETILKQVP-----------------------KEERQVMLFSATM 198
>gi|312143554|ref|YP_003995000.1| DEAD/DEAH box helicase [Halanaerobium hydrogeniformans]
gi|311904205|gb|ADQ14646.1| DEAD/DEAH box helicase domain protein [Halanaerobium
hydrogeniformans]
Length = 529
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 132/234 (56%), Gaps = 49/234 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+NEL + ++K++ +GF+E TPIQ IPA GKDI+G A+TG+GKT AFG+P+++
Sbjct: 6 FNELDISNEILKAVDDMGFEETTPIQSNAIPAVL-AGKDIVGQAQTGTGKTAAFGIPLLE 64
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK-GINVRV 154
+ +A K P+ A+I+ PTRELA+QV++ LK +AK +
Sbjct: 65 EM----------------DANKKDPQ----AIILCPTRELAIQVSEELKRLAKYKKRIYT 104
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+P+ GG S ++Q R L ++V+GTPGR+ + + G ++L+ +++FVLDEAD M++
Sbjct: 105 LPVYGGQSIQRQIRALNKGVQIVIGTPGRVMDHIRRG---TLKLNQINYFVLDEADVMLD 161
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
G ++++++ +P + RQTL FSATI S
Sbjct: 162 MGFIDDIETVLRDIP------------------------EDRQTLFFSATIPKS 191
>gi|254367888|ref|ZP_04983908.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
holarctica 257]
gi|134253698|gb|EBA52792.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
holarctica 257]
Length = 441
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 127/231 (54%), Gaps = 44/231 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++L L+ L+ ++ + G+ +PTPIQ IP +G D++ +A+TG+GKT F LPI+Q
Sbjct: 3 FSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVL-KGNDVMASAQTGTGKTAGFTLPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RLL++ + A ++ LI+TPTRELA Q+ + ++ A ++R
Sbjct: 62 RLLDQPK----------------AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSA 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S Q L+ E+++ TPGRL +L S ++ V+ +L+ FVLDEADRM++
Sbjct: 106 VIFGGVSINPQMMKLRKGVEILIATPGRLLDLYS---QNAVKFDSLNTFVLDEADRMLDM 162
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +L+ I ++LP KK QTL+FSAT +
Sbjct: 163 GFINDLKKIHNLLP------------------------KKLQTLMFSATFS 189
>gi|115454875|ref|NP_001051038.1| Os03g0708600 [Oryza sativa Japonica Group]
gi|75320262|sp|Q53RK8.1|RH21_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 21
gi|62733557|gb|AAX95674.1| DEAD/DEAH box helicase, putative [Oryza sativa Japonica Group]
gi|108710689|gb|ABF98484.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
[Oryza sativa Japonica Group]
gi|108710690|gb|ABF98485.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
[Oryza sativa Japonica Group]
gi|108710691|gb|ABF98486.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
[Oryza sativa Japonica Group]
gi|113549509|dbj|BAF12952.1| Os03g0708600 [Oryza sativa Japonica Group]
gi|125545447|gb|EAY91586.1| hypothetical protein OsI_13221 [Oryza sativa Indica Group]
gi|125587655|gb|EAZ28319.1| hypothetical protein OsJ_12293 [Oryza sativa Japonica Group]
gi|215697317|dbj|BAG91311.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 736
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 128/230 (55%), Gaps = 23/230 (10%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+E +L L++++ + G+KEP+PIQ A IP Q +D+IG AETGSGKT AF LP++
Sbjct: 317 WSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQ-RDVIGIAETGSGKTAAFVLPMLS 375
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ L EE E P A+++ PTRELA Q+ + + A + ++VV
Sbjct: 376 YITR--------LPPISEENEAEGPY----AVVMAPTRELAQQIEEETVKFATYLGIKVV 423
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
IVGG S E+Q ++ E+V+ TPGRL + + E+ L+ ++ VLDEADRMI+
Sbjct: 424 SIVGGQSIEEQGFKIRQGCEVVIATPGRLLDCL---ERRYAVLNQCNYVVLDEADRMIDM 480
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++ ++D +P +N E + E+ R T +FSAT+
Sbjct: 481 GFEPQVVGVLDAMPSSNLKPENEDEELDAKTIY-------RTTYMFSATM 523
>gi|421909360|ref|ZP_16339178.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410116748|emb|CCM81803.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
Length = 463
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 131/232 (56%), Gaps = 42/232 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L+P +++++ G+ EPTPIQ+ IPA QG+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVL-QGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
QRL++ A KG +RALI+TPTRELA QV +++++ +K +N+R
Sbjct: 61 QRLIQNEPHA------KGRRP--------VRALILTPTRELAAQVGENVRDYSKYLNIRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q L+ +++V TPGRL +L ++ V L + VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDILVATPGRLLDLE---HQNAVSLDKVEILVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +++ ++ LP +RQ L+FSAT +
Sbjct: 164 MGFIHDIRRVLAKLP------------------------ARRQNLLFSATFS 191
>gi|336372365|gb|EGO00704.1| hypothetical protein SERLA73DRAFT_105076 [Serpula lacrymans var.
lacrymans S7.3]
Length = 681
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 121/226 (53%), Gaps = 42/226 (18%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104
++K++ +G +PTPIQ A +P A GKD++G A TGSGKT AF +PI++RLL
Sbjct: 197 IIKALTTMGLHKPTPIQAAAVPVAL-LGKDVVGGAVTGSGKTAAFTIPIIERLL------ 249
Query: 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 164
+KG+ A R L++ PTRELA+Q + +A +VR +VGG+S +
Sbjct: 250 ---YRDKGKNA------AATRCLVVVPTRELAVQCFEVGTRMAGHTDVRFCLVVGGLSLK 300
Query: 165 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224
QE L++RP++++ TPGRL + + L L VLDEADRM+E+G EL I
Sbjct: 301 SQEAALRSRPDVLIATPGRLIDHLHNSPSFT--LDALDILVLDEADRMLEDGFADELTEI 358
Query: 225 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
+ P++ RQT++FSAT+ S D
Sbjct: 359 VKACPVS------------------------RQTMLFSATMTDSVD 380
>gi|428151523|ref|ZP_18999239.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|427538506|emb|CCM95377.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 459
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 131/232 (56%), Gaps = 42/232 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L+P +++++ G+ EPTPIQ+ IPA QG+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVL-QGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
QRL++ A KG +RALI+TPTRELA QV +++++ +K +N+R
Sbjct: 61 QRLIQNEPHA------KGRRP--------VRALILTPTRELAAQVGENVRDYSKYLNIRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q L+ +++V TPGRL +L ++ V L + VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDILVATPGRLLDLE---HQNAVSLDKVEILVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +++ ++ LP +RQ L+FSAT +
Sbjct: 164 MGFIHDIRRVLAKLP------------------------ARRQNLLFSATFS 191
>gi|387792078|ref|YP_006257143.1| DNA/RNA helicase [Solitalea canadensis DSM 3403]
gi|379654911|gb|AFD07967.1| DNA/RNA helicase, superfamily II [Solitalea canadensis DSM 3403]
Length = 440
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 127/230 (55%), Gaps = 42/230 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+NEL L ++K++ G+ +PTPIQ+ IP A +G+D++G A+TG+GKT AF +PI+Q
Sbjct: 3 FNELNLIDPILKALQSEGYTQPTPIQEQSIPVAL-KGQDLLGCAQTGTGKTAAFTIPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L + P +RALI+TPTRELA+Q+ + + K + ++ +
Sbjct: 62 -----------LLHPIVRHEQGTTP---IRALILTPTRELAIQIGESIAAYGKNLKLKHL 107
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG++ Q L +++V TPGRL +LM+ + + LH + FFVLDEADRM++
Sbjct: 108 VIFGGVNQLNQTVALSKGVDILVATPGRLLDLMN---QKFIHLHKVQFFVLDEADRMLDM 164
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ +I LP +KRQTL FSAT+
Sbjct: 165 GFVNDVKRVIAKLP------------------------EKRQTLFFSATM 190
>gi|423462498|ref|ZP_17439292.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X2-1]
gi|401131792|gb|EJQ39442.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X2-1]
Length = 528
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTNKEA--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPDTH------------------------QTLLFSATM 185
>gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94]
Length = 516
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTHKES--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|421918244|ref|ZP_16347776.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|410119452|emb|CCM90401.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
Length = 418
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 131/232 (56%), Gaps = 42/232 (18%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L+P +++++ G+ EPTPIQ+ IPA QG+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVL-QGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
QRL++ A KG +RALI+TPTRELA QV +++++ +K +N+R
Sbjct: 61 QRLIQNEPHA------KGRRP--------VRALILTPTRELAAQVGENVRDYSKYLNIRS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ + GG+S Q L+ +++V TPGRL +L ++ V L + VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDILVATPGRLLDLE---HQNAVSLDKVEILVLDEADRMLD 163
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +++ ++ LP +RQ L+FSAT +
Sbjct: 164 MGFIHDIRRVLAKLP------------------------ARRQNLLFSATFS 191
>gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423632143|ref|ZP_17607889.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD154]
gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401262038|gb|EJR68185.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD154]
Length = 517
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTHKES--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|229028084|ref|ZP_04184235.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
gi|228733237|gb|EEL84068.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
Length = 527
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTNKEA--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
gi|423646358|ref|ZP_17621928.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD169]
gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
gi|401287656|gb|EJR93433.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD169]
Length = 525
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTHKES--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|229107908|ref|ZP_04237540.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
gi|229125742|ref|ZP_04254771.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-Cer4]
gi|229143032|ref|ZP_04271470.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST24]
gi|296501059|ref|YP_003662759.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
gi|423590490|ref|ZP_17566552.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD045]
gi|423644958|ref|ZP_17620574.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD166]
gi|423653166|ref|ZP_17628465.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD200]
gi|146291075|sp|Q81IT9.2|CSHA_BACCR RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|228640440|gb|EEK96832.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST24]
gi|228657715|gb|EEL13524.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-Cer4]
gi|228675551|gb|EEL30763.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
gi|296322111|gb|ADH05039.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
gi|401220472|gb|EJR27106.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD045]
gi|401268292|gb|EJR74342.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD166]
gi|401302693|gb|EJS08265.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD200]
Length = 533
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTHKES--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|320589197|gb|EFX01659.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
Length = 734
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 127/231 (54%), Gaps = 17/231 (7%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W E L P L+ + +G+ EPTPIQ+A IP A QG+D+IG A TGSGKT AF LP++
Sbjct: 305 WRESPLPPRLLDVVEAVGYTEPTPIQRAAIPIAL-QGRDLIGVAVTGSGKTAAFLLPLLV 363
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ E L E ++ P ALI+ PTRELA Q+ ++ A VV
Sbjct: 364 YIKE--------LPPLDEISKNDGPY----ALILAPTRELAQQIESEARKFATPFGYTVV 411
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
IVGG S E+Q L+ E+VV TPGRL + + E+ L+ L + ++DEADRMI+
Sbjct: 412 SIVGGHSLEEQAYALRNGAEIVVATPGRLVDCI---ERRLLVLSQCCYVIMDEADRMIDL 468
Query: 216 GHFRELQSIIDMLPMTN-GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G L I+D +P N + ++E + + + R+T++++AT+
Sbjct: 469 GFEDPLNKILDAMPTANEKPDTDEAEDARAMTQYLGGKIRYRETMMYTATM 519
>gi|303317730|ref|XP_003068867.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108548|gb|EER26722.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 840
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 128/254 (50%), Gaps = 48/254 (18%)
Query: 19 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
A EE +++E ++ + L +++ + +GF PTPIQ+ IP GKD++G
Sbjct: 304 APEENPTKSEETSSNSTFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPIGLL-GKDLVGG 362
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELA 136
A TGSGKT AF +PI++RLL Y P+ R I+ PTRELA
Sbjct: 363 AVTGSGKTAAFIIPILERLL-------------------YRPRKVPTSRVAILMPTRELA 403
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
+Q + ++A ++ +VGG S +QE +LK RP++++ TPGR + M V
Sbjct: 404 VQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRNSASFTV 463
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
+ TL VLDEADRM+E+G EL I++ +P K R
Sbjct: 464 D--TLEILVLDEADRMLEDGFADELNEILNTIP------------------------KSR 497
Query: 257 QTLVFSATIALSAD 270
QT++FSAT+ S D
Sbjct: 498 QTMLFSATMTDSVD 511
>gi|153938870|ref|YP_001392080.1| DEAD/DEAH box helicase [Clostridium botulinum F str. Langeland]
gi|384463072|ref|YP_005675667.1| ATP-dependent RNA helicase [Clostridium botulinum F str. 230613]
gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. Langeland]
gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. 230613]
Length = 524
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 131/230 (56%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L L+ ++K+I +GF+ P+ IQ+ IP +G D+I A+TG+GKTLAFG P++
Sbjct: 6 FENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVL-EGADVIAQAQTGTGKTLAFGAPVIS 64
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L ++ +K G ++AL++TPTRELALQ+ D LK ++K +V+
Sbjct: 65 ALCDKEKKKG------------------VKALVLTPTRELALQIKDELKRLSKYSKTKVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S E+Q + +K+ ++VVGTPGR+ + ++ + ++L + F +LDEAD M+
Sbjct: 107 PVYGGESIERQIKDIKSGVDIVVGTPGRVLDHIN---RRTLKLGGIDFLILDEADEMLNM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ E SE+ +QT++FSAT+
Sbjct: 164 GFIEDIETIM----------ESTSEE--------------KQTMLFSATM 189
>gi|37521894|ref|NP_925271.1| ATP-dependent RNA helicase [Gloeobacter violaceus PCC 7421]
gi|35212893|dbj|BAC90266.1| gll2325 [Gloeobacter violaceus PCC 7421]
Length = 384
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 124/230 (53%), Gaps = 47/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ +L+LHP L++++ +LGF +PTPIQ IP A G+D++ A TGSGKT AF LPI+Q
Sbjct: 3 FADLQLHPDLVRAVEQLGFTQPTPIQTLAIPPAL-AGRDVLACAMTGSGKTAAFLLPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L+ + P+ RAL++TPTRELA Q+ HL ++A+ +R
Sbjct: 62 QLIAQ-------------------PRSTTRALVLTPTRELAGQIEMHLGQLARYSALRGA 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I+GG+S E Q R E+++GTPGRL + ++ L L VLDEADRM+E
Sbjct: 103 SIIGGVSPEPQARAFHKGVEVLIGTPGRLLDHF---DQPYARLANLEILVLDEADRMLEM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++ I+ + G +RQTL FSAT+
Sbjct: 160 GFLPDIRRIL--------RHTGH----------------RRQTLFFSATM 185
>gi|421486785|ref|ZP_15934320.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
gi|400194954|gb|EJO27955.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
Length = 497
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 127/239 (53%), Gaps = 44/239 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + LHPLL++SI G+ PTPIQ IP +G+D++GAA+TG+GKT AF LPI+
Sbjct: 19 FADFGLHPLLLQSIAETGYTIPTPIQAQAIPVVV-EGRDVMGAAQTGTGKTAAFTLPILH 77
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVRV 154
RL+ + +P H +RALI+TPTRELA QV + +K +K +R
Sbjct: 78 RLMPLANASA-------------SPARHPVRALILTPTRELADQVYESVKRYSKQTPLRS 124
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG+ Q+ L+ E++V TPGRL + + E+ V L + VLDEADRM++
Sbjct: 125 AVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHV---EQKNVNLSQVGILVLDEADRMLD 181
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273
G +L+ II +LP +RQ L+FSAT S + RK
Sbjct: 182 MGFLPDLERIIRLLPT------------------------QRQGLLFSAT--FSNEIRK 214
>gi|418024095|ref|ZP_12663079.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|353536968|gb|EHC06526.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
Length = 433
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 122/231 (52%), Gaps = 43/231 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ P ++++I G+++ TPIQ+ IPA +G+D++ +A+TG+GKT AF LPI+Q
Sbjct: 3 FESFSFSPEILRAISDCGYQQMTPIQQQAIPAI-RRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
KM+E E K + R LI+TPTRELA QV D++ K +N V+
Sbjct: 62 ----------KMVENPSETL-----KSNARVLILTPTRELAAQVADNVTAYCKYLNFSVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ E Q + LK +++V TPGRL E ++ + L + F VLDEADRM++
Sbjct: 107 TIYGGVKIETQAQKLKRGADVIVATPGRLLEHLTACN---LSLSNVDFLVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G ++Q I+ + KKRQ L+FSAT +
Sbjct: 164 GFSADIQKILQAV------------------------NKKRQNLLFSATFS 190
>gi|379726995|ref|YP_005319180.1| cold-shock DEAD-box protein A [Melissococcus plutonius DAT561]
gi|376317898|dbj|BAL61685.1| cold-shock DEAD-box protein A [Melissococcus plutonius DAT561]
Length = 502
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 131/254 (51%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L+ +I R GF+E TPIQ IP A +GKD+IG A+TG+GKT AFGLP+++
Sbjct: 3 FKELGLSSQLLLAIERSGFEEATPIQAETIPLAL-KGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + +K L+ L+I PTRELA+Q + L + + +++
Sbjct: 62 KIDTKNQK--------------------LQGLVIAPTRELAIQTQEELYRLGRDKKIKIQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R LK RP++VVGTPGRL + ++ + ++L + VLDEAD M+
Sbjct: 102 AVYGGADIGRQIRALKERPQIVVGTPGRLLDHLN---RRTLKLEAIETLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G +++ II +P + RQTL+FSAT+ +
Sbjct: 159 GFLEDIEKIISQVP------------------------ENRQTLLFSATMPTAIKNIGIK 194
Query: 271 FRKKLKHGSLKLKQ 284
F K H +K K+
Sbjct: 195 FMKNPDHVKIKAKE 208
>gi|374604838|ref|ZP_09677788.1| DEAD/DEAH box helicase [Paenibacillus dendritiformis C454]
gi|374389546|gb|EHQ60918.1| DEAD/DEAH box helicase [Paenibacillus dendritiformis C454]
Length = 517
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 137/254 (53%), Gaps = 53/254 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E L P L+++I LGF+E TPIQ+ IP A G+D+IG A+TG+GKT AFG+P++
Sbjct: 4 FVEFGLEPKLLQAITELGFEEATPIQEKAIPVAM-TGRDLIGQAQTGTGKTAAFGIPLIS 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ E+ + AL++TPTRELA+QV + + ++ + VR +
Sbjct: 63 KIDPSEER--------------------VVALVMTPTRELAIQVAEEIGKLTRFKGVRSL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P++++GTPGRL + ++ + + L + VLDEAD M++
Sbjct: 103 PIYGGQDIGRQIRALKKHPQIIIGTPGRLLDHIN---RKTIRLDHVQTVVLDEADEMLDM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSAD 270
G ++ SI+ ++P ++RQT++FSAT+ L+
Sbjct: 160 GFMEDITSILSLVP------------------------EERQTMLFSATMPPNIQKLANQ 195
Query: 271 FRKKLKHGSLKLKQ 284
F + +H S+ KQ
Sbjct: 196 FLRDPEHVSVMPKQ 209
>gi|410078383|ref|XP_003956773.1| hypothetical protein KAFR_0C06420 [Kazachstania africana CBS 2517]
gi|372463357|emb|CCF57638.1| hypothetical protein KAFR_0C06420 [Kazachstania africana CBS 2517]
Length = 739
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 130/248 (52%), Gaps = 46/248 (18%)
Query: 19 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
A EE +A+ T +N L L ++K + LGF +P+PIQ A IP A GKDI+
Sbjct: 200 APEEEAEDAKKQTHT-TFNTLNLSRPVLKGLSSLGFTKPSPIQSATIPIALL-GKDIVAG 257
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 138
A TGSGKT AF +PI++RLL K A R +I+TPTRELA+Q
Sbjct: 258 AVTGSGKTAAFMIPIIERLL-----------------YKPAKVASTRVVILTPTRELAIQ 300
Query: 139 VTDHLKEVAKGINVRVVPI-VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
++D K++ +N + VGG++ +QE++LK+RP++V+ TPGR + + V+
Sbjct: 301 ISDVAKKIGHFVNGLTFGLAVGGLNLRQQEQILKSRPDIVIATPGRFIDHVRNSASFSVD 360
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
+ VLDEADRM+E G EL I+ +LP +RQ
Sbjct: 361 --RVEILVLDEADRMLEEGFQDELSEIMTLLPT------------------------RRQ 394
Query: 258 TLVFSATI 265
L+FSAT+
Sbjct: 395 NLLFSATM 402
>gi|229159401|ref|ZP_04287421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
gi|228624068|gb|EEK80874.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
Length = 528
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTNKEA--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|381162701|ref|ZP_09871931.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
gi|418460916|ref|ZP_13032000.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|359739012|gb|EHK87888.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|379254606|gb|EHY88532.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
Length = 575
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 127/240 (52%), Gaps = 45/240 (18%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGK 85
EA S A+ EL L P L+ ++ LG++EPTPIQ+A IP G D++G A TG+GK
Sbjct: 13 EASDSGSTSAFGELGLRPELLTALSDLGYEEPTPIQRAAIPPLL-DGADVVGQAATGTGK 71
Query: 86 TLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 145
T AF LP++ R+ + +E++G AP AL++ PTRELA QV + +
Sbjct: 72 TAAFSLPVLHRIAD--------VEQRG-----VAPS----ALVLVPTRELAAQVCEAMYR 114
Query: 146 VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
+ +RVVP+ GG +Q R L+ ++VV TPGR + +S G ++L TL V
Sbjct: 115 YGHRLGIRVVPVYGGQPMGRQLRSLETGVDVVVATPGRALDHLSRGS---LDLSTLRMVV 171
Query: 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
LDEAD M++ G ++ +I++ P RQT++FSAT+
Sbjct: 172 LDEADEMLDMGFAEDIDAILERTP------------------------DDRQTMLFSATM 207
>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 3502]
gi|153932415|ref|YP_001385046.1| DEAD/DEAH box helicase [Clostridium botulinum A str. ATCC 19397]
gi|153936759|ref|YP_001388516.1| DEAD/DEAH box helicase [Clostridium botulinum A str. Hall]
gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
[Clostridium botulinum A str. ATCC 3502]
gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 19397]
gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. Hall]
Length = 524
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 131/230 (56%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L L+ ++K+I +GF+ P+ IQ+ IP +G D+I A+TG+GKTLAFG P++
Sbjct: 6 FENLNLNEDVLKAIQYMGFETPSAIQEKSIPVVL-EGADVIAQAQTGTGKTLAFGAPVIS 64
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L ++ +K G ++AL++TPTRELALQ+ D LK ++K +V+
Sbjct: 65 ALCDKEKKKG------------------VKALVLTPTRELALQIKDELKRLSKYSKTKVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S E+Q + +K+ ++VVGTPGR+ + ++ + ++L + F +LDEAD M+
Sbjct: 107 PVYGGESIERQIKDIKSGVDIVVGTPGRILDHIN---RRTLKLGGIDFLILDEADEMLNM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ E SE+ +QT++FSAT+
Sbjct: 164 GFIEDIETIM----------ESTSEE--------------KQTMLFSATM 189
>gi|54308937|ref|YP_129957.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
gi|46913367|emb|CAG20155.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium
profundum SS9]
Length = 422
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 126/233 (54%), Gaps = 38/233 (16%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
++ L L+ L+ ++ LGFK PTPIQ+ IP G DI+ A+TG+GKT AFGLP++
Sbjct: 2 SFQALGLNTQLVDTVTELGFKTPTPIQEQAIPQVLA-GDDIMAGAQTGTGKTAAFGLPMI 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTDHLKEVAKGINVR 153
QRLL ++ E E Y K +RAL++TPTRELA QV D + +K +++
Sbjct: 61 QRLLAS---------QQSEHDEGYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIK 111
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
V GG S Q + LK+ ++++ TPGRL + G V+L + VLDEADRM+
Sbjct: 112 VAVAYGGTSMGVQVKALKSGVDILIATPGRLLDHAFTGT---VDLSKIECLVLDEADRML 168
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
+ G +++ I+ +P +KRQTL+FSAT +
Sbjct: 169 DMGFVVDIKRIMQRMP------------------------RKRQTLLFSATFS 197
>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
Length = 524
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 131/230 (56%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L L+ ++K+I +GF+ P+ IQ+ IP +G D+I A+TG+GKTLAFG P++
Sbjct: 6 FENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVL-EGADVIAQAQTGTGKTLAFGAPVIS 64
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L ++ +K G ++AL++TPTRELALQ+ D LK ++K +V+
Sbjct: 65 ALCDKEKKKG------------------VKALVLTPTRELALQIKDELKRLSKYSKTKVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S E+Q + +K+ ++VVGTPGR+ + ++ + ++L + F +LDEAD M+
Sbjct: 107 PVYGGESIERQIKDIKSGVDIVVGTPGRVLDHIN---RRTLKLGGIDFLILDEADEMLNM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ E SE+ +QT++FSAT+
Sbjct: 164 GFIEDIETIM----------ESTSEE--------------KQTMLFSATM 189
>gi|126175289|ref|YP_001051438.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|153001611|ref|YP_001367292.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|160876347|ref|YP_001555663.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|217972460|ref|YP_002357211.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|378709548|ref|YP_005274442.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|386342041|ref|YP_006038407.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|125998494|gb|ABN62569.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
gi|151366229|gb|ABS09229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
gi|160861869|gb|ABX50403.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
gi|217497595|gb|ACK45788.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
gi|315268537|gb|ADT95390.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|334864442|gb|AEH14913.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 433
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 122/231 (52%), Gaps = 43/231 (18%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ P ++++I G+++ TPIQ+ IPA +G+D++ +A+TG+GKT AF LPI+Q
Sbjct: 3 FESFSFSPEILRAISDCGYQQMTPIQQQAIPAI-RRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
KM+E E K + R LI+TPTRELA QV D++ K +N V+
Sbjct: 62 ----------KMVENPSETL-----KSNARVLILTPTRELAAQVADNVTAYCKYLNFSVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+ E Q + LK +++V TPGRL E ++ + L + F VLDEADRM++
Sbjct: 107 TIYGGVKIETQAQKLKRGADVIVATPGRLLEHLTACN---LSLSNVDFLVLDEADRMLDM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G ++Q I+ + KKRQ L+FSAT +
Sbjct: 164 GFSADIQKILQAV------------------------NKKRQNLLFSATFS 190
>gi|423614480|ref|ZP_17590337.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD107]
gi|401237929|gb|EJR44375.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD107]
Length = 533
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L L++S+ +GF+E TPIQ IP A QGKDIIG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ +E ++ ++I PTRELA+QV + L ++ K VR++
Sbjct: 63 KVDTNKEA--------------------VQGIVIAPTRELAIQVGEELYKIGKHKRVRIL 102
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
PI GG +Q R LK P ++VGTPGR+ + ++ + + L + VLDEAD M+
Sbjct: 103 PIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN---RKTLRLQNVETVVLDEADEMLNM 159
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ +P T+ QTL+FSAT+
Sbjct: 160 GFIEDIEAILTDVPETH------------------------QTLLFSATM 185
>gi|320038882|gb|EFW20817.1| ATP-dependent RNA helicase DRS1 [Coccidioides posadasii str.
Silveira]
Length = 840
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 128/254 (50%), Gaps = 48/254 (18%)
Query: 19 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 78
A EE +++E ++ + L +++ + +GF PTPIQ+ IP GKD++G
Sbjct: 304 APEENPTKSEETSSNSTFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPIGLL-GKDLVGG 362
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELA 136
A TGSGKT AF +PI++RLL Y P+ R I+ PTRELA
Sbjct: 363 AVTGSGKTAAFIIPILERLL-------------------YRPRKVPTSRVAILMPTRELA 403
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
+Q + ++A ++ +VGG S +QE +LK RP++++ TPGR + M V
Sbjct: 404 VQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRNSASFTV 463
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
+ TL VLDEADRM+E+G EL I++ +P K R
Sbjct: 464 D--TLEILVLDEADRMLEDGFADELNEILNTIP------------------------KSR 497
Query: 257 QTLVFSATIALSAD 270
QT++FSAT+ S D
Sbjct: 498 QTMLFSATMTDSVD 511
>gi|395334307|gb|EJF66683.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 773
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 127/244 (52%), Gaps = 45/244 (18%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
+E T F + N L ++KS+ LGF PTPIQ A IP A GKD++G A TGSGKT
Sbjct: 183 SEAHTSFLSMN---LSRPIIKSLTTLGFTTPTPIQAATIPVALL-GKDVVGNAVTGSGKT 238
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF +P+++RL M ++G++A R L++ PTREL +Q + ++
Sbjct: 239 AAFIIPMLERL---------MYRDRGKKA------AATRCLVLVPTRELGVQCFEVGTKL 283
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
A ++R +VGG+S + QE L+ RP++V+ TPGRL + + L L VL
Sbjct: 284 AAHTDIRFALVVGGLSIKAQEANLRTRPDVVIATPGRLIDHIRNSP--TFTLDALDILVL 341
Query: 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
DEADRM+E+G EL II P + RQT++FSAT+
Sbjct: 342 DEADRMLEDGFADELTEIIKSCPTS------------------------RQTMLFSATMT 377
Query: 267 LSAD 270
S D
Sbjct: 378 DSVD 381
>gi|170754257|ref|YP_001782408.1| DEAD/DEAH box helicase [Clostridium botulinum B1 str. Okra]
gi|429244877|ref|ZP_19208296.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum B1 str. Okra]
gi|428758067|gb|EKX80520.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
Length = 524
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 130/230 (56%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L L+ ++K+I +GF+ P+ IQ+ IP +G D+I A+TG+GKTLAFG P++
Sbjct: 6 FENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVL-EGADVIAQAQTGTGKTLAFGAPVIS 64
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L + +K G ++AL++TPTRELALQ+ D LK ++K +V+
Sbjct: 65 ALCDNEKKKG------------------VKALVLTPTRELALQIKDELKRLSKYSKTKVL 106
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
P+ GG S E+Q + +K+ ++VVGTPGR+ + ++ + ++L + F +LDEAD M+
Sbjct: 107 PVYGGESIERQIKDIKSGVDIVVGTPGRILDHIN---RRTLKLGGIDFLILDEADEMLNM 163
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G ++++I+ E SE+ +QT++FSAT+
Sbjct: 164 GFIEDIETIM----------ESTSEE--------------KQTMLFSATM 189
>gi|134301861|ref|YP_001121830.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421751661|ref|ZP_16188700.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis AS_713]
gi|421753517|ref|ZP_16190508.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 831]
gi|421757241|ref|ZP_16194123.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 80700103]
gi|421759101|ref|ZP_16195935.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70102010]
gi|424674420|ref|ZP_18111338.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70001275]
gi|134049638|gb|ABO46709.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409086783|gb|EKM86896.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 831]
gi|409086998|gb|EKM87108.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis AS_713]
gi|409091165|gb|EKM91168.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70102010]
gi|409092696|gb|EKM92663.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 80700103]
gi|417434898|gb|EKT89830.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70001275]
Length = 441
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 127/231 (54%), Gaps = 44/231 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+++L L+ L+ ++ + G+ +PTPIQ IP +G D++ +A+TG+GKT F LPI+Q
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVL-KGNDVMASAQTGTGKTAGFTLPIIQ 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RLL++ + A ++ LI+TPTRELA Q+ + ++ A ++R
Sbjct: 62 RLLDQPK----------------AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSA 105
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG+S Q L+ E+++ TPGRL +L S ++ V+ +L+ FVLDEADRM++
Sbjct: 106 VIFGGVSINPQMMKLRKGVEILIATPGRLLDLYS---QNAVKFDSLNTFVLDEADRMLDM 162
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G +L+ I ++LP KK QTL+FSAT +
Sbjct: 163 GFINDLKKIHNLLP------------------------KKLQTLMFSATFS 189
>gi|91773889|ref|YP_566581.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
6242]
gi|9581858|gb|AAF89099.1|AF199442_1 DEAD-box RNA helicase [Methanococcoides burtonii]
gi|91712904|gb|ABE52831.1| Dead box RNA helicase [Methanococcoides burtonii DSM 6242]
Length = 522
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 128/233 (54%), Gaps = 50/233 (21%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
+++ +L + +++SI F+EPT IQK IP +GKDIIG A TGSGKTLAFG I
Sbjct: 2 ESFKKLGIEDAILRSIEDKKFEEPTEIQKMAIPLIL-EGKDIIGGAATGSGKTLAFGCGI 60
Query: 94 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153
+Q++ EKG +RAL++TPTRELA QV + LKE ++ +R
Sbjct: 61 IQKI------------EKGN---------GIRALVLTPTRELAEQVQNSLKEFSRHKQLR 99
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
V PI GG++ Q R L+ R ++VV TPGRL + + E+ ++L + VLDEADRM+
Sbjct: 100 VAPIYGGVAINPQIRQLE-RADVVVATPGRLLDHI---ERGTIDLGDVEILVLDEADRML 155
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
+ G +++ IID P RQT++FSAT++
Sbjct: 156 DMGFIDDVEEIIDECP------------------------SDRQTMMFSATVS 184
>gi|423334318|ref|ZP_17312098.1| ATP-dependent RNA helicase [Lactobacillus reuteri ATCC 53608]
gi|4409804|gb|AAD20136.1| autoaggregation-mediating protein [Lactobacillus reuteri ATCC
53608]
gi|337728126|emb|CCC03217.1| ATP-dependent RNA helicase [Lactobacillus reuteri ATCC 53608]
Length = 497
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 48/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L L+K+I R G++E TPIQ+ IP +GKD+IG A+TG+GKT AFGLPI++
Sbjct: 3 FSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVL-EGKDVIGQAQTGTGKTAAFGLPIIE 61
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ E +++A+II+PTRELA+Q + L + K +VRV
Sbjct: 62 NVDTE--------------------NPNIQAIIISPTRELAIQTQEELYRLGKDKHVRVQ 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q + LK P+++VGTPGRL + ++ +H V+L + VLDEAD M+
Sbjct: 102 VVYGGADIRRQIKSLKQHPQILVGTPGRLRDHIN---RHTVKLDHIKTLVLDEADEMLNM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
G +++SII P RQTL+FSAT+
Sbjct: 159 GFLEDIESIIKETP------------------------DDRQTLLFSATM 184
>gi|89092815|ref|ZP_01165767.1| ATP-dependent RNA helicase, DEAD box family protein [Neptuniibacter
caesariensis]
gi|89082840|gb|EAR62060.1| ATP-dependent RNA helicase, DEAD box family protein
[Oceanospirillum sp. MED92]
Length = 415
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 130/234 (55%), Gaps = 45/234 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQK-ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+ L LHP + ++ G+ E TPIQ+ A +PA +G+DI+ A+TG+GKT AF LP++
Sbjct: 3 FAALDLHPAIQSALDECGYSEMTPIQRQAIVPA--RRGRDILANAQTGTGKTAAFSLPVL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q+L +K +E E G +RALI+TPTRELA Q+ D + + + +R+
Sbjct: 61 QQL-----------ADKPKELES----GQVRALILTPTRELAQQLFDTIGRYNQHLGLRM 105
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
V + GG++ + Q + L+ +L++ TPGR+ E ++ V L T F VLDEADRM++
Sbjct: 106 VAVYGGVNLDTQMKKLRRGADLLIATPGRMLEHINACN---VNLGTTEFVVLDEADRMLD 162
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
G ++ SI+D+ P K RQTL+FSAT++ S
Sbjct: 163 MGFVTDVMSILDVTP------------------------KSRQTLLFSATLSDS 192
>gi|336469774|gb|EGO57936.1| hypothetical protein NEUTE1DRAFT_81992 [Neurospora tetrasperma FGSC
2508]
Length = 830
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 124/241 (51%), Gaps = 48/241 (19%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E ++ E+ L +++ + +GF +PTPIQ IP + GKD++G A TGSGKT AF +
Sbjct: 292 EMASFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISL-MGKDVVGGAVTGSGKTAAFVV 350
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKG--HLRALIITPTRELALQVTDHLKEVAKG 149
PI++RLL Y PK R +I+TPTRELA+Q ++A
Sbjct: 351 PILERLL-------------------YRPKKVPTTRVVILTPTRELAIQCHAVAVKLASH 391
Query: 150 INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209
+++ VGG+S + QE L+ RP++V+ TPGR + M V+ T+ VLDEA
Sbjct: 392 TDIKFCLAVGGLSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVD--TIEILVLDEA 449
Query: 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269
DRM+E+G EL I+ LP K RQT++FSAT+ S
Sbjct: 450 DRMLEDGFADELNEILTTLP------------------------KSRQTMLFSATMTSSV 485
Query: 270 D 270
D
Sbjct: 486 D 486
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.132 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,918,303,110
Number of Sequences: 23463169
Number of extensions: 203129437
Number of successful extensions: 724739
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 19598
Number of HSP's successfully gapped in prelim test: 8727
Number of HSP's that attempted gapping in prelim test: 621774
Number of HSP's gapped (non-prelim): 31508
length of query: 326
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 184
effective length of database: 9,027,425,369
effective search space: 1661046267896
effective search space used: 1661046267896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)