Query 020452
Match_columns 326
No_of_seqs 267 out of 2357
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 02:29:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 5.2E-42 1.1E-46 304.8 18.4 221 31-301 58-281 (476)
2 KOG0347 RNA helicase [RNA proc 100.0 4.2E-42 9.1E-47 316.6 17.8 269 30-326 177-445 (731)
3 KOG0338 ATP-dependent RNA heli 100.0 4.3E-41 9.3E-46 307.6 16.7 192 33-268 180-371 (691)
4 KOG0331 ATP-dependent RNA heli 100.0 1.3E-39 2.8E-44 305.8 19.0 200 35-275 92-292 (519)
5 COG0513 SrmB Superfamily II DN 100.0 3.4E-38 7.3E-43 305.6 23.7 188 34-267 29-217 (513)
6 PTZ00110 helicase; Provisional 100.0 4.8E-38 1E-42 307.0 23.7 209 25-276 121-330 (545)
7 PLN00206 DEAD-box ATP-dependen 100.0 4.3E-37 9.2E-42 299.3 23.4 211 24-276 111-322 (518)
8 KOG0342 ATP-dependent RNA heli 100.0 1.2E-37 2.6E-42 284.3 17.9 193 33-268 81-274 (543)
9 KOG0341 DEAD-box protein abstr 100.0 3.1E-39 6.6E-44 287.0 6.7 248 23-310 159-413 (610)
10 PRK04837 ATP-dependent RNA hel 100.0 2.1E-36 4.6E-41 288.4 23.4 196 34-268 8-203 (423)
11 KOG0343 RNA Helicase [RNA proc 100.0 3.6E-37 7.9E-42 284.2 17.2 194 31-268 66-259 (758)
12 KOG0326 ATP-dependent RNA heli 100.0 1.1E-37 2.4E-42 271.0 9.9 244 32-323 83-345 (459)
13 PRK10590 ATP-dependent RNA hel 100.0 7.9E-36 1.7E-40 286.7 23.8 201 35-277 2-203 (456)
14 KOG0345 ATP-dependent RNA heli 100.0 5.7E-36 1.2E-40 271.9 20.0 194 34-268 4-201 (567)
15 PRK11192 ATP-dependent RNA hel 100.0 2.5E-35 5.3E-40 282.1 24.6 199 35-277 2-202 (434)
16 KOG0340 ATP-dependent RNA heli 100.0 2.2E-36 4.7E-41 266.2 14.9 219 33-299 6-230 (442)
17 PRK11776 ATP-dependent RNA hel 100.0 4.3E-35 9.3E-40 282.3 24.7 187 34-268 4-191 (460)
18 PRK11634 ATP-dependent RNA hel 100.0 3.6E-35 7.8E-40 289.8 24.6 189 32-268 4-193 (629)
19 KOG0328 Predicted ATP-dependen 100.0 2.5E-36 5.4E-41 258.6 13.5 190 30-267 23-212 (400)
20 KOG0335 ATP-dependent RNA heli 100.0 1.7E-36 3.8E-41 280.4 13.4 211 24-268 64-275 (482)
21 PRK04537 ATP-dependent RNA hel 100.0 3.3E-35 7.2E-40 288.1 23.2 197 34-268 9-205 (572)
22 KOG0348 ATP-dependent RNA heli 100.0 3.1E-36 6.7E-41 277.2 14.5 208 34-269 136-345 (708)
23 KOG0339 ATP-dependent RNA heli 100.0 8.6E-36 1.9E-40 272.7 16.8 209 25-276 214-423 (731)
24 KOG0346 RNA helicase [RNA proc 100.0 1.4E-35 3.1E-40 267.3 15.4 209 33-282 18-229 (569)
25 KOG0333 U5 snRNP-like RNA heli 100.0 7.6E-35 1.6E-39 267.5 16.9 236 24-274 235-472 (673)
26 KOG0334 RNA helicase [RNA proc 100.0 2.8E-35 6.2E-40 289.8 13.5 207 22-268 353-559 (997)
27 PRK01297 ATP-dependent RNA hel 100.0 4.4E-33 9.6E-38 269.2 26.0 206 30-274 83-290 (475)
28 PTZ00424 helicase 45; Provisio 100.0 1.3E-32 2.8E-37 260.8 22.7 190 31-268 25-214 (401)
29 KOG0327 Translation initiation 100.0 1.2E-33 2.6E-38 251.8 13.6 206 13-266 5-211 (397)
30 KOG0336 ATP-dependent RNA heli 100.0 1.3E-33 2.8E-38 252.7 13.3 198 28-268 213-411 (629)
31 cd00268 DEADc DEAD-box helicas 100.0 9.7E-32 2.1E-36 231.4 23.0 185 36-266 1-185 (203)
32 KOG0337 ATP-dependent RNA heli 100.0 1.7E-32 3.6E-37 246.4 14.2 187 34-267 21-207 (529)
33 PRK02362 ski2-like helicase; P 100.0 1.3E-31 2.9E-36 271.0 19.2 192 35-277 2-193 (737)
34 PRK00254 ski2-like helicase; P 100.0 2.5E-31 5.5E-36 268.3 20.6 190 35-277 2-191 (720)
35 TIGR03817 DECH_helic helicase/ 100.0 3.5E-31 7.6E-36 266.1 21.5 206 30-277 8-216 (742)
36 PRK01172 ski2-like helicase; P 100.0 7.6E-29 1.7E-33 249.0 18.9 191 35-278 2-192 (674)
37 COG1201 Lhr Lhr-like helicases 100.0 5.3E-29 1.2E-33 246.2 17.4 200 41-279 8-207 (814)
38 KOG0329 ATP-dependent RNA heli 100.0 5.1E-29 1.1E-33 211.1 14.3 198 23-268 31-230 (387)
39 PRK13767 ATP-dependent helicas 100.0 1.2E-28 2.6E-33 252.3 19.5 200 41-277 18-229 (876)
40 KOG4284 DEAD box protein [Tran 100.0 2.3E-29 4.9E-34 236.3 12.2 190 28-266 19-210 (980)
41 PF00270 DEAD: DEAD/DEAH box h 100.0 8.2E-28 1.8E-32 200.6 17.7 162 58-266 1-163 (169)
42 KOG0350 DEAD-box ATP-dependent 100.0 2.8E-28 6.1E-33 223.3 14.1 178 32-230 125-325 (620)
43 KOG0332 ATP-dependent RNA heli 100.0 2.2E-28 4.9E-33 216.9 9.5 197 30-275 86-285 (477)
44 COG1204 Superfamily II helicas 99.9 3.4E-27 7.4E-32 235.7 15.0 193 38-280 13-205 (766)
45 KOG0952 DNA/RNA helicase MER3/ 99.9 2.9E-27 6.2E-32 232.2 11.3 192 52-278 106-298 (1230)
46 COG1205 Distinct helicase fami 99.9 2.1E-26 4.6E-31 232.9 17.5 202 41-282 55-259 (851)
47 KOG0344 ATP-dependent RNA heli 99.9 5.8E-26 1.3E-30 212.3 13.0 213 23-277 121-341 (593)
48 PLN03137 ATP-dependent DNA hel 99.9 4.7E-24 1E-28 215.7 20.1 186 34-276 435-639 (1195)
49 PRK09401 reverse gyrase; Revie 99.9 1.2E-23 2.7E-28 218.8 21.8 190 48-267 72-280 (1176)
50 TIGR02621 cas3_GSU0051 CRISPR- 99.9 4.5E-24 9.8E-29 212.4 17.7 169 52-268 12-218 (844)
51 TIGR00614 recQ_fam ATP-depende 99.9 1.4E-23 3E-28 202.6 18.2 170 50-276 5-185 (470)
52 PRK09751 putative ATP-dependen 99.9 1.4E-23 3E-28 219.7 16.2 169 77-277 1-181 (1490)
53 COG1202 Superfamily II helicas 99.9 1.4E-23 3E-28 195.6 11.0 197 35-278 195-395 (830)
54 TIGR01389 recQ ATP-dependent D 99.9 1.2E-22 2.6E-27 201.4 17.0 170 48-276 4-185 (591)
55 PRK11057 ATP-dependent DNA hel 99.9 2.4E-22 5.2E-27 199.2 19.1 176 40-276 8-197 (607)
56 PRK14701 reverse gyrase; Provi 99.9 3E-22 6.5E-27 212.8 20.7 151 43-223 66-234 (1638)
57 TIGR00580 mfd transcription-re 99.9 3.2E-22 7E-27 203.9 19.8 166 40-266 435-610 (926)
58 TIGR01054 rgy reverse gyrase. 99.9 3.7E-22 7.9E-27 208.1 19.6 156 43-228 65-239 (1171)
59 PRK10917 ATP-dependent DNA hel 99.9 3.9E-22 8.4E-27 199.9 19.1 135 46-213 252-396 (681)
60 TIGR00643 recG ATP-dependent D 99.9 1.1E-21 2.5E-26 195.1 18.7 139 43-213 223-370 (630)
61 COG4581 Superfamily II RNA hel 99.9 2.4E-22 5.2E-27 202.0 12.5 175 46-279 110-284 (1041)
62 PRK10689 transcription-repair 99.9 2.6E-21 5.6E-26 201.2 19.4 160 45-266 590-759 (1147)
63 PRK12899 secA preprotein trans 99.9 1.9E-21 4.1E-26 193.3 15.6 151 37-213 65-228 (970)
64 smart00487 DEXDc DEAD-like hel 99.9 5.1E-20 1.1E-24 156.2 18.9 169 51-268 3-173 (201)
65 KOG0349 Putative DEAD-box RNA 99.8 4.1E-21 8.8E-26 173.9 9.6 124 122-266 285-411 (725)
66 PHA02558 uvsW UvsW helicase; P 99.8 3.4E-20 7.3E-25 180.2 15.6 151 54-268 112-262 (501)
67 KOG0947 Cytoplasmic exosomal R 99.8 4.2E-21 9.2E-26 187.4 9.0 170 50-282 292-461 (1248)
68 COG1111 MPH1 ERCC4-like helica 99.8 6.4E-19 1.4E-23 163.1 19.9 169 54-274 13-181 (542)
69 KOG0951 RNA helicase BRR2, DEA 99.8 6.1E-20 1.3E-24 183.3 13.0 254 36-325 291-571 (1674)
70 KOG0948 Nuclear exosomal RNA h 99.8 1.9E-20 4.1E-25 179.0 6.7 164 51-277 125-288 (1041)
71 TIGR03158 cas3_cyano CRISPR-as 99.8 1.3E-18 2.7E-23 162.2 16.4 163 60-275 1-199 (357)
72 KOG0354 DEAD-box like helicase 99.8 5.4E-19 1.2E-23 171.9 13.5 179 41-269 47-225 (746)
73 PRK13766 Hef nuclease; Provisi 99.8 1.1E-17 2.3E-22 171.3 23.6 163 53-267 12-174 (773)
74 PHA02653 RNA helicase NPH-II; 99.8 2.1E-18 4.6E-23 170.6 14.3 165 58-276 166-343 (675)
75 TIGR01587 cas3_core CRISPR-ass 99.8 8.3E-19 1.8E-23 163.9 10.6 152 74-275 1-173 (358)
76 TIGR01970 DEAH_box_HrpB ATP-de 99.8 6.6E-18 1.4E-22 170.8 17.5 155 63-276 9-166 (819)
77 PRK05580 primosome assembly pr 99.8 2E-17 4.2E-22 165.6 19.9 122 56-213 144-271 (679)
78 PRK11664 ATP-dependent RNA hel 99.8 7.1E-18 1.5E-22 170.8 15.5 155 63-276 12-169 (812)
79 cd00046 DEXDc DEAD-like helica 99.8 6E-17 1.3E-21 129.5 16.1 144 73-265 1-144 (144)
80 TIGR00963 secA preprotein tran 99.7 2.2E-17 4.8E-22 162.5 13.8 134 52-214 53-190 (745)
81 COG0514 RecQ Superfamily II DN 99.7 4.2E-17 9.1E-22 156.8 13.8 172 47-277 7-190 (590)
82 PRK12898 secA preprotein trans 99.7 8.2E-17 1.8E-21 157.5 14.8 133 52-213 100-255 (656)
83 PRK09200 preprotein translocas 99.7 9.7E-17 2.1E-21 160.1 14.6 134 52-213 75-212 (790)
84 TIGR03714 secA2 accessory Sec 99.7 1.1E-16 2.3E-21 158.6 14.2 135 52-213 67-208 (762)
85 PRK13104 secA preprotein trans 99.7 5.6E-16 1.2E-20 154.8 14.1 133 52-213 79-215 (896)
86 KOG0352 ATP-dependent DNA heli 99.7 1.6E-15 3.4E-20 137.7 14.4 173 44-275 6-198 (641)
87 KOG0949 Predicted helicase, DE 99.7 3E-16 6.4E-21 154.2 10.2 173 53-276 509-682 (1330)
88 PF04851 ResIII: Type III rest 99.7 8.8E-16 1.9E-20 129.2 11.9 156 56-266 3-183 (184)
89 TIGR00595 priA primosomal prot 99.6 5.7E-15 1.2E-19 143.1 16.5 130 76-266 1-140 (505)
90 TIGR00603 rad25 DNA repair hel 99.6 2.5E-15 5.5E-20 148.7 12.0 151 56-266 255-412 (732)
91 PRK09694 helicase Cas3; Provis 99.6 7.2E-15 1.6E-19 149.1 14.1 166 55-267 285-482 (878)
92 COG1061 SSL2 DNA or RNA helica 99.6 6.1E-15 1.3E-19 141.0 11.5 123 56-217 36-163 (442)
93 KOG0950 DNA polymerase theta/e 99.6 8E-15 1.7E-19 144.6 9.9 199 32-277 199-399 (1008)
94 PRK12904 preprotein translocas 99.6 2.6E-14 5.6E-19 142.7 12.6 133 52-213 78-214 (830)
95 COG1200 RecG RecG-like helicas 99.6 9.6E-14 2.1E-18 133.9 16.0 142 40-213 246-397 (677)
96 KOG0353 ATP-dependent DNA heli 99.6 8.6E-14 1.9E-18 124.9 13.9 182 37-275 74-272 (695)
97 PRK11448 hsdR type I restricti 99.5 7.2E-14 1.6E-18 145.6 13.3 134 56-212 413-552 (1123)
98 KOG0351 ATP-dependent DNA heli 99.5 5.4E-14 1.2E-18 142.7 10.7 175 45-276 252-443 (941)
99 PRK11131 ATP-dependent RNA hel 99.5 1.2E-12 2.6E-17 136.2 16.6 155 61-276 79-238 (1294)
100 TIGR01407 dinG_rel DnaQ family 99.5 1.9E-12 4.1E-17 133.5 17.9 96 42-161 232-333 (850)
101 PRK13107 preprotein translocas 99.5 3.9E-13 8.4E-18 134.4 11.5 133 52-213 79-215 (908)
102 COG1197 Mfd Transcription-repa 99.4 8E-12 1.7E-16 127.1 18.1 165 40-265 578-752 (1139)
103 TIGR01967 DEAH_box_HrpA ATP-de 99.4 2.1E-12 4.5E-17 134.8 13.7 168 52-277 60-232 (1283)
104 TIGR00348 hsdR type I site-spe 99.4 1.6E-12 3.5E-17 130.3 12.4 155 56-266 238-403 (667)
105 PRK07246 bifunctional ATP-depe 99.4 3.6E-12 7.7E-17 130.1 14.6 88 49-161 239-330 (820)
106 TIGR03117 cas_csf4 CRISPR-asso 99.4 5.8E-12 1.3E-16 123.8 14.6 70 69-159 13-85 (636)
107 COG1198 PriA Primosomal protei 99.4 8.8E-12 1.9E-16 123.6 13.9 152 56-268 198-362 (730)
108 COG1110 Reverse gyrase [DNA re 99.3 8.5E-11 1.8E-15 117.3 17.2 145 52-228 79-229 (1187)
109 smart00489 DEXDc3 DEAD-like he 99.2 1.6E-10 3.4E-15 104.6 13.5 77 52-146 5-84 (289)
110 smart00488 DEXDc2 DEAD-like he 99.2 1.6E-10 3.4E-15 104.6 13.5 77 52-146 5-84 (289)
111 KOG2340 Uncharacterized conser 99.2 8.6E-11 1.9E-15 109.8 11.3 210 55-266 215-480 (698)
112 PRK08074 bifunctional ATP-depe 99.2 3.3E-10 7.2E-15 117.6 16.0 67 52-141 254-323 (928)
113 KOG0951 RNA helicase BRR2, DEA 99.2 4E-12 8.7E-17 128.3 1.4 156 56-271 1143-1305(1674)
114 PRK13103 secA preprotein trans 99.2 1.4E-10 3E-15 116.4 11.6 133 52-213 79-215 (913)
115 COG4096 HsdR Type I site-speci 99.2 8.9E-11 1.9E-15 115.3 9.6 141 55-229 164-310 (875)
116 COG4098 comFA Superfamily II D 99.2 1.1E-09 2.5E-14 97.6 14.7 145 56-266 97-244 (441)
117 COG1203 CRISPR-associated heli 99.1 2.6E-10 5.7E-15 115.6 11.7 169 56-266 195-381 (733)
118 PRK12906 secA preprotein trans 99.1 2.8E-10 6.2E-15 113.7 10.8 133 52-213 77-213 (796)
119 PF07517 SecA_DEAD: SecA DEAD- 99.1 4.4E-09 9.6E-14 93.2 17.1 134 51-213 73-210 (266)
120 PF07652 Flavi_DEAD: Flaviviru 99.1 1.4E-10 3.1E-15 92.1 6.8 138 71-269 3-140 (148)
121 PF00176 SNF2_N: SNF2 family N 99.1 2.9E-10 6.3E-15 103.2 9.7 149 72-266 25-173 (299)
122 PRK12326 preprotein translocas 99.1 7.9E-10 1.7E-14 108.6 12.1 133 52-213 75-211 (764)
123 KOG0952 DNA/RNA helicase MER3/ 99.1 5.4E-12 1.2E-16 125.7 -3.9 181 56-279 927-1107(1230)
124 KOG1123 RNA polymerase II tran 99.1 1E-10 2.3E-15 108.6 3.8 142 55-227 301-449 (776)
125 COG1643 HrpA HrpA-like helicas 99.0 5.3E-09 1.2E-13 105.6 15.0 160 60-277 54-216 (845)
126 PRK04914 ATP-dependent helicas 99.0 4E-09 8.6E-14 108.5 13.5 131 56-213 152-285 (956)
127 PRK11747 dinG ATP-dependent DN 99.0 9.4E-09 2E-13 103.8 14.7 65 53-140 23-95 (697)
128 PLN03142 Probable chromatin-re 99.0 1.9E-08 4.2E-13 104.0 16.3 144 56-229 169-318 (1033)
129 KOG0920 ATP-dependent RNA heli 98.9 2.7E-08 5.8E-13 100.5 16.5 168 58-281 175-344 (924)
130 CHL00122 secA preprotein trans 98.9 5.2E-09 1.1E-13 104.8 9.8 133 52-213 73-209 (870)
131 PRK12902 secA preprotein trans 98.9 1.1E-08 2.5E-13 102.4 11.9 133 52-213 82-218 (939)
132 PF06862 DUF1253: Protein of u 98.8 2.8E-08 6E-13 93.7 11.1 147 119-266 33-226 (442)
133 COG4889 Predicted helicase [Ge 98.7 1.7E-08 3.7E-13 99.6 6.8 149 34-213 140-317 (1518)
134 TIGR00604 rad3 DNA repair heli 98.7 5.2E-08 1.1E-12 98.9 10.5 74 52-145 6-82 (705)
135 PRK15483 type III restriction- 98.7 1.8E-07 3.8E-12 95.5 13.6 146 73-267 60-240 (986)
136 PRK14873 primosome assembly pr 98.7 1.2E-07 2.6E-12 94.7 11.4 133 76-268 164-306 (665)
137 TIGR02562 cas3_yersinia CRISPR 98.7 1.2E-07 2.5E-12 96.7 11.2 165 56-266 408-635 (1110)
138 PRK12903 secA preprotein trans 98.6 3.5E-07 7.5E-12 91.7 10.6 133 52-213 75-211 (925)
139 KOG0922 DEAH-box RNA helicase 98.5 1E-06 2.2E-11 85.3 12.7 162 59-277 54-216 (674)
140 COG0610 Type I site-specific r 98.5 2.3E-06 5E-11 89.1 15.1 141 73-267 274-415 (962)
141 PF13086 AAA_11: AAA domain; P 98.5 9.4E-07 2E-11 76.9 10.5 74 56-145 1-75 (236)
142 KOG0390 DNA repair protein, SN 98.4 6.3E-06 1.4E-10 82.3 13.7 162 56-266 238-415 (776)
143 KOG0385 Chromatin remodeling c 98.3 9.8E-06 2.1E-10 79.6 13.4 144 56-229 167-316 (971)
144 PF13604 AAA_30: AAA domain; P 98.3 7.5E-06 1.6E-10 69.9 10.8 116 56-229 1-118 (196)
145 KOG0925 mRNA splicing factor A 98.3 2.2E-05 4.8E-10 73.6 13.8 190 31-278 22-213 (699)
146 PF13872 AAA_34: P-loop contai 98.2 1.1E-05 2.4E-10 72.1 10.5 172 37-266 24-221 (303)
147 PF02562 PhoH: PhoH-like prote 98.2 3.9E-06 8.5E-11 71.7 7.2 190 54-322 2-198 (205)
148 PRK12900 secA preprotein trans 98.2 2.9E-06 6.3E-11 86.4 6.9 130 56-213 138-271 (1025)
149 COG1199 DinG Rad3-related DNA 98.2 6.4E-06 1.4E-10 83.3 9.3 75 50-146 9-86 (654)
150 KOG0924 mRNA splicing factor A 98.2 2.2E-05 4.8E-10 76.3 11.6 163 57-276 357-520 (1042)
151 KOG0926 DEAH-box RNA helicase 98.1 1.1E-05 2.5E-10 79.5 9.5 127 55-211 243-383 (1172)
152 KOG0923 mRNA splicing factor A 98.1 3.3E-05 7.2E-10 74.9 12.3 159 58-276 267-430 (902)
153 KOG1000 Chromatin remodeling p 98.1 4.5E-05 9.8E-10 71.7 12.2 153 55-266 197-349 (689)
154 TIGR00376 DNA helicase, putati 98.1 4.4E-05 9.5E-10 76.5 12.8 68 56-146 157-224 (637)
155 KOG0387 Transcription-coupled 98.1 2.4E-05 5.3E-10 77.2 10.3 144 56-229 205-364 (923)
156 KOG1802 RNA helicase nonsense 98.1 2.4E-05 5.2E-10 75.8 9.8 85 48-159 402-486 (935)
157 KOG0389 SNF2 family DNA-depend 98.1 1.6E-05 3.5E-10 78.3 8.7 145 53-224 397-550 (941)
158 PRK12901 secA preprotein trans 98.1 7.5E-06 1.6E-10 83.6 6.6 130 56-213 169-303 (1112)
159 PRK10536 hypothetical protein; 98.1 7.9E-05 1.7E-09 65.6 12.2 46 52-98 55-100 (262)
160 PF02399 Herpes_ori_bp: Origin 98.0 2E-05 4.3E-10 78.8 9.2 144 73-275 50-201 (824)
161 COG3587 Restriction endonuclea 98.0 4.3E-05 9.4E-10 76.1 9.7 91 73-184 75-171 (985)
162 PF09848 DUF2075: Uncharacteri 98.0 5.4E-05 1.2E-09 70.7 10.0 108 74-227 3-117 (352)
163 KOG1803 DNA helicase [Replicat 97.9 2.2E-05 4.9E-10 75.5 7.2 66 56-144 185-250 (649)
164 TIGR01447 recD exodeoxyribonuc 97.9 0.0002 4.3E-09 71.0 14.1 135 58-229 147-284 (586)
165 PF12340 DUF3638: Protein of u 97.9 0.00014 3E-09 62.9 11.2 155 35-214 4-186 (229)
166 KOG1132 Helicase of the DEAD s 97.9 8.7E-05 1.9E-09 74.2 11.1 95 52-147 18-134 (945)
167 PRK10875 recD exonuclease V su 97.9 0.00024 5.2E-09 70.7 13.5 134 58-229 154-290 (615)
168 PF13245 AAA_19: Part of AAA d 97.8 7.1E-05 1.5E-09 53.5 6.9 61 64-143 2-62 (76)
169 KOG1002 Nucleotide excision re 97.8 7.2E-05 1.6E-09 70.4 8.5 131 56-214 184-330 (791)
170 KOG4439 RNA polymerase II tran 97.8 5E-05 1.1E-09 74.1 7.4 144 56-215 325-478 (901)
171 TIGR01448 recD_rel helicase, p 97.8 0.00042 9.1E-09 70.6 14.3 67 51-140 319-385 (720)
172 KOG1805 DNA replication helica 97.7 0.00026 5.7E-09 71.5 9.8 146 31-214 648-810 (1100)
173 PF13401 AAA_22: AAA domain; P 97.7 0.00063 1.4E-08 53.6 10.4 22 70-91 2-23 (131)
174 KOG0391 SNF2 family DNA-depend 97.6 0.00024 5.1E-09 73.0 9.0 142 56-226 615-762 (1958)
175 KOG0392 SNF2 family DNA-depend 97.6 0.0007 1.5E-08 70.0 11.6 150 56-229 975-1127(1549)
176 PF14617 CMS1: U3-containing 9 97.6 0.00023 5E-09 62.7 7.0 88 119-210 122-211 (252)
177 KOG4150 Predicted ATP-dependen 97.5 3.7E-05 8E-10 73.4 1.5 192 43-276 273-472 (1034)
178 COG0653 SecA Preprotein transl 97.5 0.00038 8.1E-09 70.2 8.1 133 52-213 77-213 (822)
179 PRK13889 conjugal transfer rel 97.5 0.0016 3.6E-08 67.9 12.9 65 51-139 342-406 (988)
180 KOG0953 Mitochondrial RNA heli 97.5 0.00014 3E-09 69.4 4.5 106 75-224 194-299 (700)
181 PF00580 UvrD-helicase: UvrD/R 97.4 0.00049 1.1E-08 62.6 8.1 102 57-186 1-102 (315)
182 TIGR02768 TraA_Ti Ti-type conj 97.4 0.003 6.4E-08 64.7 13.9 65 52-140 349-413 (744)
183 PF05970 PIF1: PIF1-like helic 97.4 0.00032 7E-09 65.8 6.0 122 57-229 2-130 (364)
184 COG0556 UvrB Helicase subunit 97.3 0.00082 1.8E-08 64.1 7.6 72 56-153 12-87 (663)
185 PRK12723 flagellar biosynthesi 97.2 0.0029 6.2E-08 59.6 10.7 21 73-93 175-195 (388)
186 PRK08181 transposase; Validate 97.2 0.0026 5.7E-08 57.0 9.6 34 58-91 89-125 (269)
187 COG1875 NYN ribonuclease and A 97.2 0.002 4.4E-08 59.0 8.8 51 51-101 223-274 (436)
188 PRK13826 Dtr system oriT relax 97.2 0.009 1.9E-07 63.0 14.7 76 40-139 366-441 (1102)
189 cd00009 AAA The AAA+ (ATPases 97.1 0.01 2.2E-07 46.8 11.7 18 72-89 19-36 (151)
190 PRK06526 transposase; Provisio 97.0 0.0021 4.5E-08 57.2 7.2 25 69-93 95-119 (254)
191 KOG0384 Chromodomain-helicase 97.0 0.0056 1.2E-07 63.7 10.4 144 55-229 369-524 (1373)
192 cd01120 RecA-like_NTPases RecA 96.9 0.024 5.2E-07 45.9 12.3 18 75-92 2-19 (165)
193 PRK11054 helD DNA helicase IV; 96.8 0.0062 1.3E-07 61.7 9.7 72 55-148 195-266 (684)
194 COG2805 PilT Tfp pilus assembl 96.8 0.0032 7E-08 56.3 6.7 52 29-100 101-152 (353)
195 KOG0388 SNF2 family DNA-depend 96.8 0.008 1.7E-07 59.4 9.6 137 57-225 568-719 (1185)
196 TIGR01075 uvrD DNA helicase II 96.8 0.0075 1.6E-07 61.8 9.7 72 55-148 3-74 (715)
197 PRK06921 hypothetical protein; 96.7 0.026 5.5E-07 50.6 11.8 26 71-97 116-141 (266)
198 smart00382 AAA ATPases associa 96.7 0.0037 7.9E-08 48.9 5.5 20 72-91 2-21 (148)
199 KOG0989 Replication factor C, 96.7 0.0077 1.7E-07 54.0 7.9 32 197-229 126-157 (346)
200 PRK11889 flhF flagellar biosyn 96.6 0.017 3.6E-07 54.3 10.1 22 73-94 242-263 (436)
201 TIGR00631 uvrb excinuclease AB 96.6 0.022 4.9E-07 57.4 11.6 68 56-149 9-80 (655)
202 PRK10919 ATP-dependent DNA hel 96.6 0.0069 1.5E-07 61.5 7.7 71 56-148 2-72 (672)
203 PF03354 Terminase_1: Phage Te 96.5 0.0064 1.4E-07 59.2 7.1 130 59-215 1-138 (477)
204 PF00308 Bac_DnaA: Bacterial d 96.5 0.028 6E-07 48.8 10.2 47 199-268 96-143 (219)
205 PRK04296 thymidine kinase; Pro 96.5 0.0062 1.3E-07 51.7 6.0 19 73-91 3-21 (190)
206 KOG0386 Chromatin remodeling c 96.5 0.0048 1E-07 62.9 5.7 133 54-214 392-529 (1157)
207 COG3421 Uncharacterized protei 96.5 0.011 2.3E-07 57.5 7.8 116 77-214 2-126 (812)
208 PRK14974 cell division protein 96.4 0.041 8.9E-07 50.9 11.1 44 200-267 222-266 (336)
209 PRK13894 conjugal transfer ATP 96.4 0.013 2.8E-07 53.9 7.8 51 44-97 122-172 (319)
210 PF05127 Helicase_RecD: Helica 96.4 0.0027 5.9E-08 53.0 3.0 111 76-225 1-111 (177)
211 COG1419 FlhF Flagellar GTP-bin 96.4 0.022 4.7E-07 53.4 9.1 73 72-166 203-275 (407)
212 PRK14722 flhF flagellar biosyn 96.4 0.014 2.9E-07 54.7 7.8 25 71-95 136-160 (374)
213 PRK13833 conjugal transfer pro 96.4 0.015 3.2E-07 53.5 7.9 48 47-97 121-168 (323)
214 PRK05703 flhF flagellar biosyn 96.3 0.039 8.4E-07 52.8 10.6 22 72-93 221-242 (424)
215 PRK07952 DNA replication prote 96.3 0.041 8.9E-07 48.6 10.0 24 73-97 100-123 (244)
216 PRK05298 excinuclease ABC subu 96.3 0.053 1.2E-06 54.9 12.0 70 53-149 10-83 (652)
217 PRK11773 uvrD DNA-dependent he 96.2 0.015 3.2E-07 59.7 7.9 71 56-148 9-79 (721)
218 TIGR01074 rep ATP-dependent DN 96.2 0.016 3.6E-07 58.8 8.2 70 57-148 2-71 (664)
219 PRK12377 putative replication 96.2 0.048 1E-06 48.3 10.0 25 72-97 101-125 (248)
220 PRK08116 hypothetical protein; 96.2 0.03 6.6E-07 50.2 8.9 24 74-98 116-139 (268)
221 COG1444 Predicted P-loop ATPas 96.2 0.068 1.5E-06 54.0 11.9 160 41-268 199-359 (758)
222 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.022 4.7E-07 49.4 7.7 21 71-91 37-57 (226)
223 PRK05642 DNA replication initi 96.2 0.021 4.6E-07 50.1 7.6 30 200-229 97-127 (234)
224 PRK06893 DNA replication initi 96.1 0.015 3.2E-07 50.9 6.6 19 73-91 40-58 (229)
225 PRK14964 DNA polymerase III su 96.1 0.03 6.4E-07 54.4 9.1 43 34-92 10-55 (491)
226 TIGR02782 TrbB_P P-type conjug 96.1 0.029 6.3E-07 51.1 8.3 70 44-136 106-175 (299)
227 PF05621 TniB: Bacterial TniB 96.1 0.049 1.1E-06 49.2 9.6 113 73-229 62-176 (302)
228 KOG0921 Dosage compensation co 96.1 0.018 3.8E-07 58.4 7.2 114 70-212 391-505 (1282)
229 PRK07003 DNA polymerase III su 96.0 0.075 1.6E-06 53.9 11.6 41 35-91 14-57 (830)
230 PRK14087 dnaA chromosomal repl 96.0 0.05 1.1E-06 52.6 10.1 31 199-229 205-236 (450)
231 COG0553 HepA Superfamily II DN 96.0 0.044 9.5E-07 57.2 10.4 138 55-215 337-487 (866)
232 cd01124 KaiC KaiC is a circadi 96.0 0.049 1.1E-06 45.6 8.9 48 75-146 2-49 (187)
233 KOG1133 Helicase of the DEAD s 96.0 0.033 7.2E-07 55.0 8.6 48 56-103 15-65 (821)
234 PTZ00112 origin recognition co 96.0 0.18 4E-06 52.0 13.8 27 200-227 869-895 (1164)
235 PHA02533 17 large terminase pr 95.9 0.046 1E-06 53.8 9.5 72 56-149 59-130 (534)
236 PHA02544 44 clamp loader, smal 95.9 0.064 1.4E-06 49.1 10.0 40 34-89 18-60 (316)
237 PHA03333 putative ATPase subun 95.9 0.17 3.6E-06 50.7 13.1 73 56-150 169-243 (752)
238 TIGR01547 phage_term_2 phage t 95.9 0.026 5.7E-07 53.5 7.5 121 75-229 4-126 (396)
239 PRK12402 replication factor C 95.8 0.084 1.8E-06 48.7 10.5 22 70-91 32-55 (337)
240 PRK04195 replication factor C 95.8 0.051 1.1E-06 53.0 9.2 43 35-90 12-57 (482)
241 PRK07764 DNA polymerase III su 95.8 0.064 1.4E-06 55.5 10.1 22 74-95 39-60 (824)
242 PRK00149 dnaA chromosomal repl 95.8 0.068 1.5E-06 51.7 9.8 24 73-97 149-172 (450)
243 PF00448 SRP54: SRP54-type pro 95.7 0.12 2.5E-06 44.1 10.0 20 75-94 4-23 (196)
244 PRK08691 DNA polymerase III su 95.7 0.044 9.5E-07 55.1 8.4 21 73-93 39-59 (709)
245 PRK00411 cdc6 cell division co 95.7 0.14 2.9E-06 48.5 11.4 17 73-89 56-72 (394)
246 cd01122 GP4d_helicase GP4d_hel 95.6 0.045 9.7E-07 49.0 7.6 26 70-95 28-53 (271)
247 PRK08084 DNA replication initi 95.6 0.043 9.4E-07 48.2 7.2 20 71-90 44-63 (235)
248 PRK14956 DNA polymerase III su 95.6 0.078 1.7E-06 51.2 9.4 19 74-92 42-60 (484)
249 PRK14961 DNA polymerase III su 95.6 0.16 3.4E-06 47.7 11.2 18 74-91 40-57 (363)
250 PRK08727 hypothetical protein; 95.6 0.047 1E-06 47.9 7.2 18 73-90 42-59 (233)
251 PRK07994 DNA polymerase III su 95.5 0.13 2.8E-06 51.7 11.0 19 75-93 41-59 (647)
252 TIGR01073 pcrA ATP-dependent D 95.5 0.044 9.6E-07 56.3 7.9 72 55-148 3-74 (726)
253 TIGR02760 TraI_TIGR conjugativ 95.5 0.21 4.4E-06 56.7 13.5 63 56-141 429-492 (1960)
254 PRK14952 DNA polymerase III su 95.5 0.13 2.8E-06 51.2 10.7 19 75-93 38-56 (584)
255 KOG0298 DEAD box-containing he 95.5 0.06 1.3E-06 56.6 8.5 149 72-229 374-539 (1394)
256 PRK14958 DNA polymerase III su 95.5 0.072 1.6E-06 52.2 8.8 19 74-92 40-58 (509)
257 PRK12323 DNA polymerase III su 95.5 0.073 1.6E-06 53.2 8.7 20 74-93 40-59 (700)
258 COG1474 CDC6 Cdc6-related prot 95.4 0.071 1.5E-06 50.0 8.3 24 73-97 43-66 (366)
259 PHA03368 DNA packaging termina 95.4 0.05 1.1E-06 54.1 7.4 145 72-277 254-404 (738)
260 TIGR02785 addA_Gpos recombinat 95.4 0.043 9.4E-07 59.5 7.7 124 57-211 2-126 (1232)
261 PF01695 IstB_IS21: IstB-like 95.4 0.031 6.8E-07 46.8 5.3 25 69-93 44-68 (178)
262 COG2256 MGS1 ATPase related to 95.4 0.19 4.2E-06 46.9 10.6 26 66-91 40-67 (436)
263 PLN03025 replication factor C 95.4 0.26 5.6E-06 45.3 11.7 19 73-91 35-53 (319)
264 PRK08903 DnaA regulatory inact 95.3 0.086 1.9E-06 45.8 8.1 20 71-90 41-60 (227)
265 TIGR02525 plasmid_TraJ plasmid 95.3 0.031 6.7E-07 52.4 5.4 27 71-98 148-174 (372)
266 PRK09111 DNA polymerase III su 95.2 0.11 2.4E-06 51.9 9.4 43 35-93 22-67 (598)
267 COG4626 Phage terminase-like p 95.2 0.21 4.6E-06 48.5 10.8 139 56-229 61-211 (546)
268 PRK14965 DNA polymerase III su 95.2 0.2 4.3E-06 50.0 11.0 18 74-91 40-57 (576)
269 PRK14723 flhF flagellar biosyn 95.2 0.093 2E-06 53.5 8.7 21 73-93 186-206 (767)
270 PRK14960 DNA polymerase III su 95.2 0.09 2E-06 52.6 8.4 20 74-93 39-58 (702)
271 PF06745 KaiC: KaiC; InterPro 95.2 0.052 1.1E-06 47.2 6.2 53 71-146 18-70 (226)
272 PRK13851 type IV secretion sys 95.2 0.036 7.8E-07 51.4 5.4 35 62-97 152-186 (344)
273 PRK14955 DNA polymerase III su 95.1 0.13 2.8E-06 48.9 9.2 19 74-92 40-58 (397)
274 TIGR02524 dot_icm_DotB Dot/Icm 95.1 0.034 7.3E-07 52.0 5.1 27 70-97 132-158 (358)
275 PRK14088 dnaA chromosomal repl 95.1 0.12 2.6E-06 49.8 9.0 24 73-97 131-154 (440)
276 PRK06731 flhF flagellar biosyn 95.1 0.38 8.3E-06 43.1 11.5 21 73-93 76-96 (270)
277 PRK13709 conjugal transfer nic 95.0 0.35 7.5E-06 53.9 13.1 65 56-139 967-1032(1747)
278 PRK14712 conjugal transfer nic 95.0 0.26 5.5E-06 54.3 11.9 65 56-139 835-900 (1623)
279 TIGR00362 DnaA chromosomal rep 95.0 0.1 2.2E-06 49.8 8.1 24 73-97 137-160 (405)
280 PRK06645 DNA polymerase III su 95.0 0.2 4.4E-06 49.0 10.3 20 73-92 44-63 (507)
281 COG4962 CpaF Flp pilus assembl 95.0 0.034 7.4E-07 50.9 4.5 65 50-138 151-215 (355)
282 PRK06995 flhF flagellar biosyn 95.0 0.15 3.3E-06 49.4 9.2 89 72-184 256-346 (484)
283 cd01130 VirB11-like_ATPase Typ 94.9 0.062 1.3E-06 45.3 5.7 39 49-89 4-42 (186)
284 TIGR02760 TraI_TIGR conjugativ 94.9 0.32 7E-06 55.1 12.6 62 56-139 1019-1084(1960)
285 PRK12727 flagellar biosynthesi 94.9 0.18 3.9E-06 49.3 9.3 24 70-93 348-371 (559)
286 PRK14951 DNA polymerase III su 94.9 0.13 2.7E-06 51.5 8.6 20 74-93 40-59 (618)
287 PRK08533 flagellar accessory p 94.8 0.44 9.4E-06 41.7 11.1 25 70-94 22-46 (230)
288 COG0630 VirB11 Type IV secreto 94.8 0.057 1.2E-06 49.5 5.7 58 34-97 110-167 (312)
289 TIGR03499 FlhF flagellar biosy 94.8 0.076 1.7E-06 48.0 6.4 22 72-93 194-215 (282)
290 TIGR02928 orc1/cdc6 family rep 94.8 0.22 4.8E-06 46.5 9.8 24 73-97 41-64 (365)
291 TIGR03877 thermo_KaiC_1 KaiC d 94.8 0.1 2.2E-06 45.9 7.0 53 71-147 20-72 (237)
292 PRK14957 DNA polymerase III su 94.8 0.4 8.7E-06 47.3 11.7 20 74-93 40-59 (546)
293 COG0470 HolB ATPase involved i 94.8 0.14 3.1E-06 46.8 8.3 22 72-93 23-45 (325)
294 PRK13900 type IV secretion sys 94.7 0.073 1.6E-06 49.3 6.1 34 63-97 151-184 (332)
295 PRK14948 DNA polymerase III su 94.7 0.18 3.9E-06 50.6 9.2 44 34-93 13-59 (620)
296 PRK11331 5-methylcytosine-spec 94.7 0.12 2.7E-06 49.4 7.6 33 57-90 180-212 (459)
297 PF05496 RuvB_N: Holliday junc 94.7 0.087 1.9E-06 45.6 6.0 17 74-90 52-68 (233)
298 PRK14086 dnaA chromosomal repl 94.6 0.14 3.1E-06 50.9 8.1 31 199-229 376-407 (617)
299 PRK14959 DNA polymerase III su 94.6 0.17 3.7E-06 50.5 8.6 21 73-93 39-59 (624)
300 PRK12726 flagellar biosynthesi 94.5 0.15 3.2E-06 47.9 7.6 22 72-93 206-227 (407)
301 PRK14949 DNA polymerase III su 94.5 0.22 4.7E-06 51.6 9.4 17 75-91 41-57 (944)
302 PRK03992 proteasome-activating 94.5 0.17 3.6E-06 48.0 8.2 52 34-89 128-182 (389)
303 PRK05563 DNA polymerase III su 94.4 0.37 8.1E-06 47.9 10.7 21 73-93 39-59 (559)
304 PRK14950 DNA polymerase III su 94.4 0.28 6.1E-06 49.1 9.8 20 73-92 39-58 (585)
305 PRK14969 DNA polymerase III su 94.4 0.35 7.5E-06 47.8 10.3 19 74-92 40-58 (527)
306 TIGR03015 pepcterm_ATPase puta 94.3 0.61 1.3E-05 41.4 11.1 35 56-90 23-61 (269)
307 PHA03372 DNA packaging termina 94.3 0.29 6.4E-06 48.2 9.3 145 72-277 202-351 (668)
308 PRK14954 DNA polymerase III su 94.3 0.15 3.3E-06 51.1 7.6 21 73-93 39-59 (620)
309 PF13173 AAA_14: AAA domain 94.2 0.63 1.4E-05 36.5 9.7 25 201-227 62-86 (128)
310 COG1484 DnaC DNA replication p 94.2 0.11 2.3E-06 46.3 5.8 68 52-143 79-152 (254)
311 KOG1015 Transcription regulato 94.1 0.32 7E-06 50.1 9.4 122 73-214 697-835 (1567)
312 TIGR03819 heli_sec_ATPase heli 94.1 0.15 3.3E-06 47.3 6.8 52 36-89 144-195 (340)
313 PRK13342 recombination factor 94.1 0.49 1.1E-05 45.2 10.5 18 73-90 37-54 (413)
314 PRK10689 transcription-repair 94.1 0.21 4.6E-06 53.6 8.6 92 123-229 809-904 (1147)
315 KOG0991 Replication factor C, 93.9 0.16 3.4E-06 44.2 6.0 30 199-229 112-141 (333)
316 PF00437 T2SE: Type II/IV secr 93.9 0.069 1.5E-06 47.8 4.1 35 62-97 117-151 (270)
317 PF05729 NACHT: NACHT domain 93.9 0.5 1.1E-05 38.2 8.9 22 75-97 3-24 (166)
318 PRK14721 flhF flagellar biosyn 93.8 0.24 5.3E-06 47.2 7.7 21 72-92 191-211 (420)
319 TIGR00580 mfd transcription-re 93.8 0.25 5.5E-06 51.9 8.5 79 123-212 660-742 (926)
320 PRK13341 recombination factor 93.8 0.49 1.1E-05 48.4 10.4 18 73-90 53-70 (725)
321 PRK12422 chromosomal replicati 93.8 0.28 6.2E-06 47.3 8.3 24 73-97 142-165 (445)
322 PRK00771 signal recognition pa 93.8 0.55 1.2E-05 45.1 10.2 20 74-93 97-116 (437)
323 PRK05986 cob(I)alamin adenolsy 93.8 0.47 1E-05 40.1 8.6 27 71-97 21-47 (191)
324 PF05876 Terminase_GpA: Phage 93.8 0.039 8.5E-07 54.7 2.4 72 56-149 16-89 (557)
325 PRK09112 DNA polymerase III su 93.8 0.41 8.9E-06 44.7 9.0 21 70-90 40-63 (351)
326 KOG0742 AAA+-type ATPase [Post 93.8 0.096 2.1E-06 49.0 4.7 50 34-89 352-401 (630)
327 PF03969 AFG1_ATPase: AFG1-lik 93.7 0.39 8.5E-06 45.0 8.9 44 199-266 126-169 (362)
328 PRK05896 DNA polymerase III su 93.7 0.67 1.5E-05 46.2 10.8 20 73-92 39-58 (605)
329 TIGR01420 pilT_fam pilus retra 93.7 0.12 2.5E-06 48.2 5.3 26 71-97 121-146 (343)
330 PRK06835 DNA replication prote 93.7 0.29 6.4E-06 45.2 7.8 26 71-97 182-207 (329)
331 PRK11823 DNA repair protein Ra 93.6 0.49 1.1E-05 45.7 9.6 51 72-146 80-130 (446)
332 COG3973 Superfamily I DNA and 93.6 0.14 3E-06 50.2 5.7 95 37-148 185-285 (747)
333 TIGR00631 uvrb excinuclease AB 93.6 0.86 1.9E-05 46.2 11.5 79 122-213 441-523 (655)
334 cd01129 PulE-GspE PulE/GspE Th 93.6 0.18 3.8E-06 45.1 6.0 45 49-97 59-104 (264)
335 PRK08451 DNA polymerase III su 93.5 0.57 1.2E-05 46.1 9.9 41 35-91 12-55 (535)
336 TIGR02538 type_IV_pilB type IV 93.4 0.14 3E-06 51.0 5.7 45 49-97 295-340 (564)
337 COG2804 PulE Type II secretory 93.4 0.15 3.2E-06 49.2 5.5 45 49-97 237-282 (500)
338 KOG1001 Helicase-like transcri 93.4 0.23 5E-06 50.1 7.1 116 74-215 154-269 (674)
339 cd01126 TraG_VirD4 The TraG/Tr 93.4 0.052 1.1E-06 51.3 2.5 48 74-146 1-48 (384)
340 cd00561 CobA_CobO_BtuR ATP:cor 93.4 1.5 3.3E-05 35.9 10.7 32 198-229 93-126 (159)
341 PRK06067 flagellar accessory p 93.3 1.2 2.6E-05 38.8 10.9 52 71-146 24-75 (234)
342 PRK07471 DNA polymerase III su 93.3 0.44 9.5E-06 44.7 8.4 18 74-91 43-60 (365)
343 TIGR01425 SRP54_euk signal rec 93.3 1.1 2.3E-05 43.0 11.1 18 74-91 102-119 (429)
344 COG1197 Mfd Transcription-repa 93.3 0.31 6.8E-06 51.3 8.0 173 34-229 712-898 (1139)
345 KOG0744 AAA+-type ATPase [Post 93.2 0.092 2E-06 47.7 3.6 70 73-160 178-258 (423)
346 PRK10436 hypothetical protein; 93.1 0.17 3.6E-06 49.0 5.5 36 61-97 206-242 (462)
347 PRK14963 DNA polymerase III su 93.1 0.55 1.2E-05 46.0 9.1 18 74-91 38-55 (504)
348 PRK05707 DNA polymerase III su 93.1 0.48 1E-05 43.8 8.2 37 56-92 3-42 (328)
349 TIGR03878 thermo_KaiC_2 KaiC d 93.0 0.79 1.7E-05 40.8 9.4 25 71-95 35-59 (259)
350 KOG2028 ATPase related to the 93.0 0.41 8.9E-06 44.4 7.4 26 65-90 153-180 (554)
351 PRK04537 ATP-dependent RNA hel 93.0 0.54 1.2E-05 46.9 9.0 74 123-209 257-334 (572)
352 TIGR00959 ffh signal recogniti 93.0 0.66 1.4E-05 44.4 9.2 22 74-95 101-122 (428)
353 cd00984 DnaB_C DnaB helicase C 92.9 0.68 1.5E-05 40.5 8.7 27 70-96 11-37 (242)
354 KOG2228 Origin recognition com 92.9 2.2 4.7E-05 39.3 11.7 44 182-229 122-166 (408)
355 COG0593 DnaA ATPase involved i 92.8 0.86 1.9E-05 43.2 9.6 46 200-268 175-221 (408)
356 KOG0732 AAA+-type ATPase conta 92.8 0.23 5E-06 52.0 6.2 57 32-89 260-316 (1080)
357 PF02534 T4SS-DNA_transf: Type 92.8 0.13 2.8E-06 50.0 4.3 49 73-146 45-93 (469)
358 PRK04837 ATP-dependent RNA hel 92.8 0.44 9.6E-06 45.6 7.9 73 123-208 255-331 (423)
359 TIGR00596 rad1 DNA repair prot 92.7 0.56 1.2E-05 48.5 8.9 66 173-266 7-73 (814)
360 PRK13764 ATPase; Provisional 92.7 0.18 3.8E-06 50.3 5.1 27 70-97 255-281 (602)
361 PRK09183 transposase/IS protei 92.6 0.41 9E-06 42.6 7.0 24 69-92 99-122 (259)
362 PRK06305 DNA polymerase III su 92.6 1.5 3.2E-05 42.5 11.2 20 73-92 40-59 (451)
363 PF14516 AAA_35: AAA-like doma 92.6 3 6.5E-05 38.6 12.8 38 59-97 18-55 (331)
364 PRK13897 type IV secretion sys 92.6 0.15 3.3E-06 50.9 4.4 57 72-157 158-214 (606)
365 PRK00440 rfc replication facto 92.4 2.2 4.8E-05 38.8 11.7 17 74-90 40-56 (319)
366 TIGR00064 ftsY signal recognit 92.4 1.3 2.9E-05 39.7 10.0 21 73-93 73-93 (272)
367 PF12775 AAA_7: P-loop contain 92.3 0.13 2.9E-06 46.1 3.5 28 62-89 23-50 (272)
368 TIGR03880 KaiC_arch_3 KaiC dom 92.3 0.63 1.4E-05 40.3 7.6 52 71-146 15-66 (224)
369 PRK11192 ATP-dependent RNA hel 92.2 0.97 2.1E-05 43.4 9.5 71 123-206 245-319 (434)
370 TIGR02655 circ_KaiC circadian 92.1 1.7 3.7E-05 42.5 11.1 51 72-146 263-313 (484)
371 PF13177 DNA_pol3_delta2: DNA 92.1 1.2 2.6E-05 36.6 8.7 30 199-229 101-130 (162)
372 TIGR00678 holB DNA polymerase 92.0 1.5 3.3E-05 36.7 9.5 19 73-91 15-33 (188)
373 COG2909 MalT ATP-dependent tra 92.0 0.46 1E-05 48.5 7.0 42 201-266 130-171 (894)
374 TIGR00708 cobA cob(I)alamin ad 91.9 0.95 2.1E-05 37.7 7.8 31 199-229 96-128 (173)
375 cd01121 Sms Sms (bacterial rad 91.9 1.3 2.7E-05 41.8 9.5 20 72-91 82-101 (372)
376 PRK07133 DNA polymerase III su 91.9 1.3 2.9E-05 45.1 10.1 19 74-92 42-60 (725)
377 COG5008 PilU Tfp pilus assembl 91.9 0.17 3.8E-06 44.7 3.4 19 71-89 126-144 (375)
378 PRK12724 flagellar biosynthesi 91.9 1.4 3.1E-05 41.9 9.8 22 74-95 225-246 (432)
379 COG0466 Lon ATP-dependent Lon 91.8 0.43 9.3E-06 47.9 6.5 65 157-229 382-446 (782)
380 TIGR02788 VirB11 P-type DNA tr 91.8 0.29 6.2E-06 44.8 5.1 25 65-89 137-161 (308)
381 PF02572 CobA_CobO_BtuR: ATP:c 91.8 2.5 5.4E-05 35.2 10.1 31 199-229 95-127 (172)
382 KOG2227 Pre-initiation complex 91.8 1.1 2.5E-05 42.8 8.9 19 71-89 174-192 (529)
383 PTZ00110 helicase; Provisional 91.7 0.83 1.8E-05 45.4 8.6 73 122-207 376-452 (545)
384 PRK14953 DNA polymerase III su 91.7 1.4 2.9E-05 43.1 9.8 17 75-91 41-57 (486)
385 PRK11034 clpA ATP-dependent Cl 91.6 1.1 2.3E-05 46.3 9.3 20 72-91 207-226 (758)
386 KOG1131 RNA polymerase II tran 91.5 1 2.2E-05 43.5 8.3 75 53-146 13-90 (755)
387 COG1219 ClpX ATP-dependent pro 91.4 0.13 2.7E-06 46.8 2.2 19 71-89 96-114 (408)
388 COG0513 SrmB Superfamily II DN 91.3 1.6 3.4E-05 43.0 10.0 68 125-205 275-346 (513)
389 KOG0331 ATP-dependent RNA heli 91.3 0.79 1.7E-05 44.6 7.5 72 121-205 339-414 (519)
390 PRK10416 signal recognition pa 91.2 2.1 4.6E-05 39.3 10.1 19 73-91 115-133 (318)
391 PRK14971 DNA polymerase III su 91.2 0.97 2.1E-05 45.5 8.4 30 197-227 118-147 (614)
392 PRK06871 DNA polymerase III su 91.1 1.2 2.6E-05 41.0 8.4 37 57-93 3-45 (325)
393 TIGR02533 type_II_gspE general 91.1 0.43 9.3E-06 46.6 5.7 45 49-97 221-266 (486)
394 PRK10590 ATP-dependent RNA hel 91.1 1.1 2.5E-05 43.3 8.7 71 123-206 245-319 (456)
395 TIGR02397 dnaX_nterm DNA polym 90.8 1.7 3.6E-05 40.4 9.2 17 73-89 37-53 (355)
396 PRK13850 type IV secretion sys 90.8 0.29 6.2E-06 49.6 4.3 48 73-145 140-187 (670)
397 KOG0058 Peptide exporter, ABC 90.8 0.88 1.9E-05 45.7 7.5 32 198-229 620-651 (716)
398 COG1074 RecB ATP-dependent exo 90.7 0.42 9E-06 51.6 5.7 62 69-148 13-74 (1139)
399 COG1435 Tdk Thymidine kinase [ 90.7 3.2 7E-05 35.1 9.7 50 175-229 61-110 (201)
400 TIGR00763 lon ATP-dependent pr 90.6 0.8 1.7E-05 47.5 7.5 18 72-89 347-364 (775)
401 TIGR03600 phage_DnaB phage rep 90.6 1.1 2.4E-05 42.9 8.0 24 70-93 192-215 (421)
402 PF12846 AAA_10: AAA-like doma 90.5 0.48 1E-05 42.5 5.2 25 73-98 2-26 (304)
403 TIGR00614 recQ_fam ATP-depende 90.5 1.3 2.8E-05 43.1 8.5 74 123-209 226-303 (470)
404 PRK06647 DNA polymerase III su 90.5 1.3 2.7E-05 44.2 8.4 18 74-91 40-57 (563)
405 COG1221 PspF Transcriptional r 90.4 2.3 4.9E-05 40.3 9.6 21 70-90 99-119 (403)
406 PF03237 Terminase_6: Terminas 90.4 1.5 3.2E-05 40.5 8.6 24 76-99 1-24 (384)
407 PRK11776 ATP-dependent RNA hel 90.3 1.2 2.5E-05 43.2 8.0 72 124-208 243-318 (460)
408 TIGR00767 rho transcription te 90.2 1.5 3.2E-05 41.5 8.2 20 70-89 166-185 (415)
409 PF01078 Mg_chelatase: Magnesi 90.1 0.45 9.8E-06 40.7 4.3 27 63-89 13-39 (206)
410 TIGR02237 recomb_radB DNA repa 90.1 2.1 4.6E-05 36.4 8.7 25 71-95 11-35 (209)
411 PF06733 DEAD_2: DEAD_2; Inte 90.0 0.23 4.9E-06 41.4 2.4 51 163-214 109-159 (174)
412 COG2109 BtuR ATP:corrinoid ade 89.9 2 4.3E-05 36.1 7.8 23 75-97 31-53 (198)
413 TIGR03345 VI_ClpV1 type VI sec 89.7 1 2.2E-05 47.2 7.3 17 74-90 598-614 (852)
414 PRK10867 signal recognition pa 89.7 1.4 3E-05 42.3 7.7 20 75-94 103-122 (433)
415 COG0606 Predicted ATPase with 89.6 0.34 7.5E-06 46.3 3.5 27 63-89 189-215 (490)
416 KOG0344 ATP-dependent RNA heli 89.6 2.5 5.3E-05 41.4 9.2 97 81-210 366-466 (593)
417 TIGR02640 gas_vesic_GvpN gas v 89.5 0.38 8.2E-06 43.0 3.6 22 70-91 19-40 (262)
418 COG2255 RuvB Holliday junction 89.5 0.89 1.9E-05 40.8 5.7 18 74-91 54-71 (332)
419 TIGR00602 rad24 checkpoint pro 89.4 2.1 4.6E-05 43.1 9.1 19 73-91 111-129 (637)
420 PF02456 Adeno_IVa2: Adenoviru 89.4 0.51 1.1E-05 42.7 4.2 13 75-87 90-102 (369)
421 KOG2004 Mitochondrial ATP-depe 89.1 0.51 1.1E-05 47.4 4.3 47 177-229 488-534 (906)
422 PRK01297 ATP-dependent RNA hel 89.0 1.9 4.1E-05 42.0 8.3 73 123-208 335-411 (475)
423 COG0210 UvrD Superfamily I DNA 89.0 1.4 3.1E-05 44.7 7.7 71 56-148 2-72 (655)
424 PRK11634 ATP-dependent RNA hel 88.9 1.7 3.7E-05 43.9 8.1 70 124-206 246-319 (629)
425 KOG1513 Nuclear helicase MOP-3 88.9 0.2 4.4E-06 50.5 1.5 158 56-266 264-455 (1300)
426 cd01131 PilT Pilus retraction 88.8 0.47 1E-05 40.4 3.6 23 74-97 3-25 (198)
427 PRK13822 conjugal transfer cou 88.7 0.53 1.1E-05 47.5 4.3 49 72-145 224-272 (641)
428 TIGR02639 ClpA ATP-dependent C 88.7 2.8 6E-05 43.2 9.6 20 72-91 203-222 (731)
429 KOG0741 AAA+-type ATPase [Post 88.6 4.2 9E-05 39.8 9.8 51 39-89 494-555 (744)
430 TIGR03743 SXT_TraD conjugative 88.6 1.3 2.7E-05 44.8 6.9 54 72-148 176-231 (634)
431 PRK08769 DNA polymerase III su 88.6 3 6.6E-05 38.3 8.8 38 54-91 2-45 (319)
432 PRK09376 rho transcription ter 88.6 4.2 9.1E-05 38.5 9.8 54 32-88 129-185 (416)
433 KOG1969 DNA replication checkp 88.4 2.4 5.2E-05 42.9 8.4 16 74-89 328-343 (877)
434 TIGR00643 recG ATP-dependent D 88.3 2 4.3E-05 43.5 8.1 92 123-229 448-551 (630)
435 PRK08760 replicative DNA helic 88.3 2.1 4.5E-05 41.7 8.0 130 71-229 228-372 (476)
436 PRK05973 replicative DNA helic 88.2 1.1 2.3E-05 39.5 5.4 53 70-146 62-114 (237)
437 PTZ00454 26S protease regulato 88.2 0.39 8.4E-06 45.6 2.9 55 31-89 139-196 (398)
438 PRK06904 replicative DNA helic 88.2 3.6 7.9E-05 40.0 9.6 132 70-229 219-367 (472)
439 TIGR00665 DnaB replicative DNA 88.1 1.1 2.5E-05 43.0 6.1 21 71-91 194-214 (434)
440 PTZ00424 helicase 45; Provisio 88.1 2.2 4.7E-05 40.3 7.9 72 123-207 267-342 (401)
441 PF04665 Pox_A32: Poxvirus A32 88.1 0.81 1.8E-05 40.2 4.6 27 69-96 10-36 (241)
442 PRK04328 hypothetical protein; 88.0 0.87 1.9E-05 40.3 4.8 52 71-146 22-73 (249)
443 KOG0734 AAA+-type ATPase conta 88.0 2.6 5.6E-05 41.2 8.1 17 73-89 338-354 (752)
444 PRK05298 excinuclease ABC subu 87.8 7.1 0.00015 39.7 11.8 78 122-212 445-526 (652)
445 KOG0739 AAA+-type ATPase [Post 87.8 5.5 0.00012 36.2 9.5 52 31-89 127-183 (439)
446 PRK05748 replicative DNA helic 87.8 3.1 6.6E-05 40.2 8.8 20 71-90 202-221 (448)
447 cd00079 HELICc Helicase superf 87.8 5 0.00011 30.7 8.6 75 123-210 28-106 (131)
448 TIGR02784 addA_alphas double-s 87.6 1.4 3E-05 47.9 6.9 59 70-148 8-66 (1141)
449 PTZ00293 thymidine kinase; Pro 87.6 3.6 7.8E-05 35.4 8.1 18 72-89 4-21 (211)
450 PRK04841 transcriptional regul 87.5 3.8 8.2E-05 43.1 10.1 28 202-229 123-150 (903)
451 PRK07414 cob(I)yrinic acid a,c 87.5 9.4 0.0002 31.9 10.3 31 199-229 114-146 (178)
452 TIGR01054 rgy reverse gyrase. 87.5 1.6 3.5E-05 47.2 7.2 75 123-206 326-404 (1171)
453 PRK11057 ATP-dependent DNA hel 87.5 2.4 5.2E-05 42.7 8.1 55 123-181 236-294 (607)
454 TIGR03754 conj_TOL_TraD conjug 87.5 2 4.2E-05 43.3 7.3 54 72-148 180-235 (643)
455 cd03115 SRP The signal recogni 87.4 3.3 7.1E-05 34.1 7.7 17 75-91 3-19 (173)
456 TIGR01389 recQ ATP-dependent D 87.4 2.6 5.7E-05 42.3 8.4 55 123-181 224-282 (591)
457 KOG0733 Nuclear AAA ATPase (VC 87.4 0.65 1.4E-05 45.8 3.8 55 33-91 507-564 (802)
458 PRK13880 conjugal transfer cou 87.4 0.59 1.3E-05 47.2 3.8 46 72-142 175-220 (636)
459 PF10412 TrwB_AAD_bind: Type I 87.4 0.99 2.1E-05 42.7 5.1 28 71-99 14-41 (386)
460 PRK07993 DNA polymerase III su 87.4 1.3 2.8E-05 41.1 5.7 36 57-92 3-44 (334)
461 TIGR02767 TraG-Ti Ti-type conj 87.2 0.82 1.8E-05 46.0 4.5 49 73-146 212-260 (623)
462 COG1222 RPT1 ATP-dependent 26S 87.1 0.84 1.8E-05 42.2 4.2 54 31-89 145-202 (406)
463 PRK08939 primosomal protein Dn 87.1 1.3 2.7E-05 40.6 5.4 20 72-91 156-175 (306)
464 PF13555 AAA_29: P-loop contai 87.0 0.59 1.3E-05 31.8 2.4 18 72-89 23-40 (62)
465 COG2874 FlaH Predicted ATPases 87.0 4.7 0.0001 34.7 8.3 48 198-266 121-168 (235)
466 PLN03187 meiotic recombination 87.0 3.9 8.4E-05 38.1 8.6 30 28-57 26-55 (344)
467 PRK05636 replicative DNA helic 86.9 1.8 3.8E-05 42.6 6.6 31 199-229 374-408 (505)
468 TIGR03346 chaperone_ClpB ATP-d 86.8 3.2 6.9E-05 43.6 8.9 20 72-91 194-213 (852)
469 PRK07004 replicative DNA helic 86.7 2.6 5.7E-05 40.9 7.6 30 200-229 324-357 (460)
470 PLN00206 DEAD-box ATP-dependen 86.5 3 6.6E-05 41.1 8.2 73 123-207 367-443 (518)
471 PRK08506 replicative DNA helic 86.4 2.8 6.2E-05 40.8 7.8 24 71-94 191-214 (472)
472 cd01393 recA_like RecA is a b 86.3 3 6.5E-05 35.9 7.2 25 71-95 18-42 (226)
473 cd01127 TrwB Bacterial conjuga 86.3 0.89 1.9E-05 43.4 4.2 26 71-97 41-66 (410)
474 COG1200 RecG RecG-like helicas 86.2 3.1 6.8E-05 41.6 7.8 93 122-229 472-576 (677)
475 KOG0333 U5 snRNP-like RNA heli 86.1 2.8 6.1E-05 40.7 7.2 71 122-205 516-590 (673)
476 PF07728 AAA_5: AAA domain (dy 86.1 0.63 1.4E-05 36.8 2.6 16 74-89 1-16 (139)
477 PHA02244 ATPase-like protein 86.0 1.4 3E-05 41.3 5.0 24 66-89 113-136 (383)
478 TIGR03881 KaiC_arch_4 KaiC dom 85.8 1.3 2.8E-05 38.4 4.7 25 71-95 19-43 (229)
479 PRK09165 replicative DNA helic 85.8 5.1 0.00011 39.3 9.2 23 71-93 216-238 (497)
480 cd01123 Rad51_DMC1_radA Rad51_ 85.7 1.8 3.9E-05 37.6 5.5 25 71-95 18-42 (235)
481 TIGR02688 conserved hypothetic 85.7 1.9 4.1E-05 41.1 5.9 52 40-91 171-228 (449)
482 PF00004 AAA: ATPase family as 85.7 0.75 1.6E-05 35.6 2.8 16 75-90 1-16 (132)
483 COG1132 MdlB ABC-type multidru 85.6 2 4.3E-05 42.8 6.4 32 198-229 481-512 (567)
484 PRK13876 conjugal transfer cou 85.6 1 2.3E-05 45.6 4.4 48 72-144 144-191 (663)
485 KOG1807 Helicases [Replication 85.6 3.3 7.1E-05 42.1 7.6 72 56-145 378-449 (1025)
486 PF03796 DnaB_C: DnaB-like hel 85.5 2.5 5.4E-05 37.4 6.5 131 71-229 18-163 (259)
487 TIGR02868 CydC thiol reductant 85.4 2.1 4.6E-05 42.2 6.5 32 198-229 486-517 (529)
488 PF01580 FtsK_SpoIIIE: FtsK/Sp 85.3 2 4.3E-05 36.5 5.5 27 71-97 37-63 (205)
489 cd01128 rho_factor Transcripti 85.3 4.5 9.7E-05 35.8 7.8 18 70-87 14-31 (249)
490 PRK10917 ATP-dependent DNA hel 85.3 3.7 8E-05 42.0 8.2 92 123-229 471-574 (681)
491 PF13191 AAA_16: AAA ATPase do 85.2 1.5 3.3E-05 36.1 4.7 26 71-97 23-48 (185)
492 COG4185 Uncharacterized protei 85.2 0.32 7E-06 39.7 0.5 20 75-94 5-24 (187)
493 KOG1514 Origin recognition com 85.2 12 0.00026 37.9 11.2 52 199-272 507-558 (767)
494 TIGR00150 HI0065_YjeE ATPase, 85.0 0.74 1.6E-05 36.6 2.5 27 69-96 19-45 (133)
495 TIGR03158 cas3_cyano CRISPR-as 84.9 6.5 0.00014 36.8 9.2 71 123-207 272-342 (357)
496 PRK08699 DNA polymerase III su 84.9 3.1 6.8E-05 38.4 6.9 36 57-92 2-41 (325)
497 PRK08006 replicative DNA helic 84.8 7.1 0.00015 38.0 9.6 30 200-229 336-369 (471)
498 PRK08840 replicative DNA helic 84.8 7.4 0.00016 37.8 9.7 30 200-229 329-362 (464)
499 PRK09302 circadian clock prote 84.7 4.5 9.8E-05 39.8 8.3 51 72-146 273-323 (509)
500 TIGR01970 DEAH_box_HrpB ATP-de 84.6 11 0.00024 39.4 11.3 72 124-205 210-285 (819)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-42 Score=304.83 Aligned_cols=221 Identities=41% Similarity=0.698 Sum_probs=192.3
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~ 110 (326)
+...+|.+|++++.++++++..||..||++|+++||.++ .|+|+|..|.||||||.+|++||+++++..
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L-~g~dvIglAeTGSGKT~afaLPIl~~LL~~---------- 126 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVAL-GGRDVIGLAETGSGKTGAFALPILQRLLQE---------- 126 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhh-CCCcEEEEeccCCCchhhhHHHHHHHHHcC----------
Confidence 567789999999999999999999999999999999995 999999999999999999999999999864
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhc
Q 020452 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
...++++|++||||||.|+.+.++.++...|+++.++.||.+...+...+.+.+||+|+|||+|++++.+
T Consensus 127 ----------p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~ 196 (476)
T KOG0330|consen 127 ----------PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLEN 196 (476)
T ss_pred ----------CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHh
Confidence 2347999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHH
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 270 (326)
. +.+++.+++++|+||||+++++.|...+..|+..+| .++|+++|||||+...
T Consensus 197 T--kgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip------------------------~erqt~LfsATMt~kv- 249 (476)
T KOG0330|consen 197 T--KGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP------------------------RERQTFLFSATMTKKV- 249 (476)
T ss_pred c--cCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC------------------------ccceEEEEEeecchhh-
Confidence 3 347789999999999999999999999999999999 7899999999998553
Q ss_pred HHHHhhcccccccc---ccCccccHHHHHHHhCC
Q 020452 271 FRKKLKHGSLKLKQ---SVNGLNSIETLSERAGM 301 (326)
Q Consensus 271 ~~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~ 301 (326)
+.|.+..++... ....-..++.+.+.|-|
T Consensus 250 --~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylf 281 (476)
T KOG0330|consen 250 --RKLQRASLDNPVKVAVSSKYQTVDHLKQTYLF 281 (476)
T ss_pred --HHHHhhccCCCeEEeccchhcchHHhhhheEe
Confidence 333333333221 12244556666666644
No 2
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-42 Score=316.62 Aligned_cols=269 Identities=43% Similarity=0.668 Sum_probs=221.4
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020452 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 109 (326)
Q Consensus 30 ~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~ 109 (326)
+.++..|.+|.++..++++|..+||..||++|..+||.+++...|++..|.||||||++|-+||++.+....+.
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~------ 250 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDD------ 250 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccch------
Confidence 46777999999999999999999999999999999999974448999999999999999999999976543221
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHh
Q 020452 110 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~ 189 (326)
..+.......+..+.+||++||||||.|+...+..+++..++++..++||.....+.+.++..++|+|+||||||.++.
T Consensus 251 -s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~ 329 (731)
T KOG0347|consen 251 -SQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIE 329 (731)
T ss_pred -HhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHH
Confidence 1111112222333469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
.+......++++++||+||+|+|++.|+++.+..++..|... +. +..+|+++||||++...
T Consensus 330 e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~-~~------------------~~qrQTlVFSATlt~~~ 390 (731)
T KOG0347|consen 330 EDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEE-QK------------------NRQRQTLVFSATLTLVL 390 (731)
T ss_pred hhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhh-hc------------------ccccceEEEEEEeehhh
Confidence 887777889999999999999999999999999999998711 11 15689999999998553
Q ss_pred HHHHHhhccccccccccCccccHHHHHHHhCCccCcEEEecCChHHHHhhhhhhccC
Q 020452 270 DFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326 (326)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 326 (326)
+......+..... .......++.+.+..+|+.++.|||+++.+.+++.|.|+.|+
T Consensus 391 ~~~~~~~~k~~~k--~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~ 445 (731)
T KOG0347|consen 391 QQPLSSSRKKKDK--EDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIE 445 (731)
T ss_pred cChhHHhhhccch--hhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhc
Confidence 3322222111111 112334578899999999999999999999999999998775
No 3
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-41 Score=307.58 Aligned_cols=192 Identities=44% Similarity=0.695 Sum_probs=178.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
..+|.+|+|+-++++++..+||..|||+|..+||..+ -|+|++.||.||||||.+|++|++++++...
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPval-lgkDIca~A~TGsGKTAAF~lPiLERLlYrP----------- 247 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVAL-LGKDICACAATGSGKTAAFALPILERLLYRP----------- 247 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHh-hcchhhheecccCCchhhhHHHHHHHHhcCc-----------
Confidence 3489999999999999999999999999999999985 7999999999999999999999999997643
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~ 192 (326)
......|+|||+|||+|+.|++...++++...++.++++.||.+...+...++.+|||+|+|||+|.++|.+..
T Consensus 248 ------k~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~ 321 (691)
T KOG0338|consen 248 ------KKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP 321 (691)
T ss_pred ------ccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC
Confidence 22446799999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.+.++++.+||+||||+|++.+|.+.+..|+..+| +.+|+++|||||+..
T Consensus 322 --sf~ldsiEVLvlDEADRMLeegFademnEii~lcp------------------------k~RQTmLFSATMtee 371 (691)
T KOG0338|consen 322 --SFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCP------------------------KNRQTMLFSATMTEE 371 (691)
T ss_pred --CccccceeEEEechHHHHHHHHHHHHHHHHHHhcc------------------------ccccceeehhhhHHH
Confidence 37789999999999999999999999999999999 889999999999733
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-39 Score=305.81 Aligned_cols=200 Identities=39% Similarity=0.626 Sum_probs=181.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
.|+++++++....+++..||..|||+|.+.||.++ .|+|++..|.||||||++|++|++.++.....
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l-~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~------------ 158 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIAL-SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG------------ 158 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceec-cCCceEEEeccCCcchhhhhhHHHHHHHhccc------------
Confidence 79999999999999999999999999999999995 99999999999999999999999999976311
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
....+.+|++|||+||||||.|+.+.+.++...++++..+++||.....|.+.+.++.+|+|+||++|.+++..+.
T Consensus 159 --~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~-- 234 (519)
T KOG0331|consen 159 --KLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS-- 234 (519)
T ss_pred --cccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC--
Confidence 2345668999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc-HHHHH
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRK 273 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~-~~~~~ 273 (326)
.+++++.++|+||||+|+++||..++..|+..++. +.+|++++|||+|.. ..+++
T Consensus 235 -~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~-----------------------~~rQtlm~saTwp~~v~~lA~ 290 (519)
T KOG0331|consen 235 -LNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPR-----------------------PDRQTLMFSATWPKEVRQLAE 290 (519)
T ss_pred -ccccceeEEEeccHHhhhccccHHHHHHHHHhcCC-----------------------CcccEEEEeeeccHHHHHHHH
Confidence 88999999999999999999999999999999962 456999999999955 33444
Q ss_pred Hh
Q 020452 274 KL 275 (326)
Q Consensus 274 ~l 275 (326)
.+
T Consensus 291 ~f 292 (519)
T KOG0331|consen 291 DF 292 (519)
T ss_pred HH
Confidence 43
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-38 Score=305.55 Aligned_cols=188 Identities=44% Similarity=0.749 Sum_probs=172.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
..|++|++++.+++++.++||..|||+|.++||.++ .|+|+++.|+||||||++|++|+++.+....
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l-~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------------ 95 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLIL-AGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------------ 95 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhccc------------
Confidence 689999999999999999999999999999999996 8999999999999999999999999964310
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~ 192 (326)
. .....+||++||||||.|+++.+..+.... ++++..++||.+...+...+..++||||+||+++++++.++
T Consensus 96 -----~-~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~- 168 (513)
T COG0513 96 -----E-RKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG- 168 (513)
T ss_pred -----c-cCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-
Confidence 0 111119999999999999999999999988 79999999999999999888888999999999999999876
Q ss_pred cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
..+++.++++|+||||+|+++||.+.+..|+..+| ..+|+++||||++.
T Consensus 169 --~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p------------------------~~~qtllfSAT~~~ 217 (513)
T COG0513 169 --KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALP------------------------PDRQTLLFSATMPD 217 (513)
T ss_pred --CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC------------------------cccEEEEEecCCCH
Confidence 38899999999999999999999999999999999 67999999999996
No 6
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.8e-38 Score=307.01 Aligned_cols=209 Identities=32% Similarity=0.506 Sum_probs=185.1
Q ss_pred CcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhh
Q 020452 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104 (326)
Q Consensus 25 ~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~ 104 (326)
++.++|+++.+|++++|++.++++|+++||..|+|+|.++||.++ +|+|++++||||||||++|++|++.++....
T Consensus 121 ~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l-~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~--- 196 (545)
T PTZ00110 121 AGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIAL-SGRDMIGIAETGSGKTLAFLLPAIVHINAQP--- 196 (545)
T ss_pred cCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---
Confidence 567889999999999999999999999999999999999999995 8999999999999999999999998875431
Q ss_pred hhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH
Q 020452 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l 184 (326)
......++++|||+||++||.|+++.++.+....++++..++|+.....+...+..+++|+|+||++|
T Consensus 197 ------------~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL 264 (545)
T PTZ00110 197 ------------LLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRL 264 (545)
T ss_pred ------------cccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 11123467999999999999999999999999889999999999998888888888999999999999
Q ss_pred HHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeee
Q 020452 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264 (326)
Q Consensus 185 ~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SAT 264 (326)
.+++..+. ..++++++||+||||+|++++|...+..++..++ +.+|++++|||
T Consensus 265 ~d~l~~~~---~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~------------------------~~~q~l~~SAT 317 (545)
T PTZ00110 265 IDFLESNV---TNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------------------------PDRQTLMWSAT 317 (545)
T ss_pred HHHHHcCC---CChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC------------------------CCCeEEEEEeC
Confidence 99997653 6788999999999999999999999999999887 77999999999
Q ss_pred ccCc-HHHHHHhh
Q 020452 265 IALS-ADFRKKLK 276 (326)
Q Consensus 265 l~~~-~~~~~~l~ 276 (326)
++.. ..+.+++.
T Consensus 318 ~p~~v~~l~~~l~ 330 (545)
T PTZ00110 318 WPKEVQSLARDLC 330 (545)
T ss_pred CCHHHHHHHHHHh
Confidence 9854 34444443
No 7
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.3e-37 Score=299.28 Aligned_cols=211 Identities=36% Similarity=0.569 Sum_probs=183.5
Q ss_pred cCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHh
Q 020452 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 103 (326)
Q Consensus 24 ~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~ 103 (326)
+.+..+|+++.+|++++|++.+++.|+..||..|||+|.++||.++ +|+|++++||||||||++|++|++.++...+..
T Consensus 111 ~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il-~g~dviv~ApTGSGKTlayllPil~~l~~~~~~ 189 (518)
T PLN00206 111 VKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAAL-SGRSLLVSADTGSGKTASFLVPIISRCCTIRSG 189 (518)
T ss_pred ecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEecCCCCccHHHHHHHHHHHHhhccc
Confidence 3456788999999999999999999999999999999999999996 899999999999999999999999988643211
Q ss_pred hhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHH
Q 020452 104 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183 (326)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~ 183 (326)
......++++||++||++||.|+++.++.+.+..++++..++||.....+...+..+++|+|+||++
T Consensus 190 -------------~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgr 256 (518)
T PLN00206 190 -------------HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGR 256 (518)
T ss_pred -------------cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHH
Confidence 1112356799999999999999999999999888899999999998888877788899999999999
Q ss_pred HHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEee
Q 020452 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263 (326)
Q Consensus 184 l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 263 (326)
|.+++.... ..++++++||+||||+|++++|...+..++..++ .+|++++||
T Consensus 257 L~~~l~~~~---~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-------------------------~~q~l~~SA 308 (518)
T PLN00206 257 LIDLLSKHD---IELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-------------------------QPQVLLFSA 308 (518)
T ss_pred HHHHHHcCC---ccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-------------------------CCcEEEEEe
Confidence 999997653 6789999999999999999999999999988775 479999999
Q ss_pred eccCc-HHHHHHhh
Q 020452 264 TIALS-ADFRKKLK 276 (326)
Q Consensus 264 Tl~~~-~~~~~~l~ 276 (326)
|++.. ..+..++.
T Consensus 309 Tl~~~v~~l~~~~~ 322 (518)
T PLN00206 309 TVSPEVEKFASSLA 322 (518)
T ss_pred eCCHHHHHHHHHhC
Confidence 99865 34555543
No 8
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.2e-37 Score=284.32 Aligned_cols=193 Identities=38% Similarity=0.597 Sum_probs=176.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
-..|++..|++.++++++++||..+|++|+.+|+.++ .|+|+++.|.||||||++|++|+++.+.+.+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll-~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~----------- 148 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLL-EGKDVLAAAKTGTGKTLAFLLPAIELLRKLK----------- 148 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccC-CCccceeeeccCCCceeeehhHHHHHHHhcc-----------
Confidence 3458899999999999999999999999999999995 8999999999999999999999999998764
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~ 191 (326)
.....+..+||+||||+||.|++..++++..+. ++.+..+.||.........+..+++|+|+|||+|.+++.+.
T Consensus 149 -----~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt 223 (543)
T KOG0342|consen 149 -----FKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNT 223 (543)
T ss_pred -----cCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcC
Confidence 334568899999999999999999999999988 89999999999988888888889999999999999999876
Q ss_pred CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.. ..+.+++++|+||||++++.||.+.++.|+..+| ..+|+++||||.+..
T Consensus 224 ~~--f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp------------------------k~rqt~LFSAT~~~k 274 (543)
T KOG0342|consen 224 SG--FLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILP------------------------KQRQTLLFSATQPSK 274 (543)
T ss_pred Cc--chhhccceeEeecchhhhhcccHHHHHHHHHhcc------------------------ccceeeEeeCCCcHH
Confidence 43 4467789999999999999999999999999999 789999999999844
No 9
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=3.1e-39 Score=287.01 Aligned_cols=248 Identities=31% Similarity=0.529 Sum_probs=212.0
Q ss_pred ccCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHH
Q 020452 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEERE 102 (326)
Q Consensus 23 ~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~ 102 (326)
++.+..+|+|+.+|.+|.++..+++.|++.|+..|||+|.+.+|.++ +|+|+|..|-||||||++|.+|++...+...-
T Consensus 159 ~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvL-sGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~ 237 (610)
T KOG0341|consen 159 LVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPVIMFALEQEM 237 (610)
T ss_pred EeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEe-ecCceeeEEeecCCceEEEeHHHHHHHHHHHh
Confidence 35567889999999999999999999999999999999999999995 99999999999999999999999998876542
Q ss_pred hhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC------CcEEEEEEcCCCHHHHHHHHhcCCCE
Q 020452 103 KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI------NVRVVPIVGGMSTEKQERLLKARPEL 176 (326)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~------~~~v~~~~g~~~~~~~~~~~~~~~~I 176 (326)
. .+...+.+|..||+||+|+||.|+++.+..++..+ .++.+++.||.+..++....+.+.||
T Consensus 238 ~------------lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHi 305 (610)
T KOG0341|consen 238 M------------LPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHI 305 (610)
T ss_pred c------------CccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeE
Confidence 2 13455678999999999999999999999887533 47888999999999999999999999
Q ss_pred EEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCc
Q 020452 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256 (326)
Q Consensus 177 lV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (326)
+|+||++|.+++.. +..+++-+++|++||||+|+++||.+++..|+..++ ..+
T Consensus 306 vVATPGRL~DmL~K---K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK------------------------~QR 358 (610)
T KOG0341|consen 306 VVATPGRLMDMLAK---KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFK------------------------GQR 358 (610)
T ss_pred EEcCcchHHHHHHH---hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHh------------------------hhh
Confidence 99999999999964 347888999999999999999999999999999998 789
Q ss_pred eEEEEeeeccCcH-HHHHHhhccccccccccCccccHHHHHHHhCCccCcEEEec
Q 020452 257 QTLVFSATIALSA-DFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDL 310 (326)
Q Consensus 257 q~i~~SATl~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 310 (326)
|+++||||+|... .|++.-.-++...+..+.+...++.+.+..+++.+..++++
T Consensus 359 QTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVyl 413 (610)
T KOG0341|consen 359 QTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYL 413 (610)
T ss_pred heeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhH
Confidence 9999999999764 45555555666666566677777766666666655555543
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-36 Score=288.43 Aligned_cols=196 Identities=31% Similarity=0.569 Sum_probs=173.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
.+|++++|++.++++|+++||..|+|+|.++||.++ +|+|++++||||||||++|++|+++.+......
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il-~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~---------- 76 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTL-AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAP---------- 76 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEECCCCchHHHHHHHHHHHHHHhcccc----------
Confidence 589999999999999999999999999999999996 899999999999999999999999998754321
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCc
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
......++++|||+||++||.|+++.+..+....++++..++|+.....+...+..+++|+|+||++|.+++..+.
T Consensus 77 ---~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~- 152 (423)
T PRK04837 77 ---EDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNH- 152 (423)
T ss_pred ---cccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-
Confidence 0111346799999999999999999999999999999999999998888888888889999999999999997653
Q ss_pred ccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 194 ~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
..+++++++|+||||+|++++|...+..++..++.. ..+|.+++|||++..
T Consensus 153 --~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~----------------------~~~~~~l~SAT~~~~ 203 (423)
T PRK04837 153 --INLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA----------------------NQRLNMLFSATLSYR 203 (423)
T ss_pred --cccccccEEEEecHHHHhhcccHHHHHHHHHhCCCc----------------------cceeEEEEeccCCHH
Confidence 678999999999999999999999999999988732 357889999999844
No 11
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-37 Score=284.15 Aligned_cols=194 Identities=42% Similarity=0.611 Sum_probs=177.5
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~ 110 (326)
..+..|++|+|+..++++|+..+|..||.+|+.+||.++ .|+|++..|.||||||++|++|+++.+++.+
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL-~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k--------- 135 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMAL-QGHDVLGAAKTGSGKTLAFLVPVLEALYRLK--------- 135 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhc-cCcccccccccCCCceeeehHHHHHHHHHcC---------
Confidence 455689999999999999999999999999999999996 9999999999999999999999999999874
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhc
Q 020452 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
+....|.-||||.|||+||.|+++.+.+.+++.++..+++.||.........+. +.+|+|||||||+++|..
T Consensus 136 -------Ws~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde 207 (758)
T KOG0343|consen 136 -------WSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDE 207 (758)
T ss_pred -------CCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhh
Confidence 455678899999999999999999999999999999999999998766655554 689999999999999986
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.. .++..++.+||+||||+|+++||...+..|++.|| ..+|+++||||-+..
T Consensus 208 ~~--~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP------------------------~~RQTLLFSATqt~s 259 (758)
T KOG0343|consen 208 NP--NFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLP------------------------KKRQTLLFSATQTKS 259 (758)
T ss_pred cC--CCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCC------------------------hhheeeeeecccchh
Confidence 53 36678899999999999999999999999999999 889999999999865
No 12
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=271.01 Aligned_cols=244 Identities=32% Similarity=0.566 Sum_probs=214.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~ 111 (326)
+=..|+++.|..+++..+.+.||..|+|+|+++||.++ .|+|+++.|..|+|||.+|++|+++.+...
T Consensus 83 kG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~~IP~Lekid~~----------- 150 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAYCIPVLEKIDPK----------- 150 (459)
T ss_pred cCccHHHhhhhHHHHHHHHHhccCCCCCccccccceee-cchhhhhhccCCCCCccceechhhhhcCcc-----------
Confidence 34579999999999999999999999999999999995 999999999999999999999999987433
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC
Q 020452 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~ 191 (326)
....+++|++|||+||.|+.+.++++.++.++++...+||++..+....+....|++|+||+++++++..+
T Consensus 151 ---------~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg 221 (459)
T KOG0326|consen 151 ---------KNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG 221 (459)
T ss_pred ---------ccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc
Confidence 34679999999999999999999999999999999999999999888888999999999999999999765
Q ss_pred CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc-HH
Q 020452 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-AD 270 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~-~~ 270 (326)
...++++.++|+||||.+++..|...++.++..|| +.+|++++|||+|.. ..
T Consensus 222 ---Va~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP------------------------~~rQillySATFP~tVk~ 274 (459)
T KOG0326|consen 222 ---VADLSDCVILVMDEADKLLSVDFQPIVEKLISFLP------------------------KERQILLYSATFPLTVKG 274 (459)
T ss_pred ---cccchhceEEEechhhhhhchhhhhHHHHHHHhCC------------------------ccceeeEEecccchhHHH
Confidence 36789999999999999999999999999999999 889999999999976 56
Q ss_pred HHHHhhcccc-----------------ccccccCccccHHHHHHHhCCccCcEEEecCC-hHHHHhhhhhh
Q 020452 271 FRKKLKHGSL-----------------KLKQSVNGLNSIETLSERAGMRANVAIVDLTN-VSVLANKLEES 323 (326)
Q Consensus 271 ~~~~l~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 323 (326)
|++.-.++++ ......++++.+..|..++.+.+.+.++...+ .+.++.||.|.
T Consensus 275 Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITel 345 (459)
T KOG0326|consen 275 FMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL 345 (459)
T ss_pred HHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhc
Confidence 6666433322 22334557788888999999988888888775 77788888875
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=7.9e-36 Score=286.73 Aligned_cols=201 Identities=38% Similarity=0.697 Sum_probs=176.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
+|++|+|++.++++|.++||..||++|.++||.++ +|+|++++||||||||++|++|+++.+......
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il-~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~----------- 69 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH----------- 69 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc-----------
Confidence 79999999999999999999999999999999995 899999999999999999999999988543210
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
......+++|||+||++||.|+++.++.+....++++..++|+.....+...+..+++|+|+||++|++++....
T Consensus 70 ---~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~-- 144 (456)
T PRK10590 70 ---AKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA-- 144 (456)
T ss_pred ---cccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC--
Confidence 111234689999999999999999999999989999999999999888888888889999999999999987543
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc-HHHHH
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRK 273 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~-~~~~~ 273 (326)
..++++++||+||||+|++++|...+..++..++ ...|+++||||++.. .++..
T Consensus 145 -~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~------------------------~~~q~l~~SAT~~~~~~~l~~ 199 (456)
T PRK10590 145 -VKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLP------------------------AKRQNLLFSATFSDDIKALAE 199 (456)
T ss_pred -cccccceEEEeecHHHHhccccHHHHHHHHHhCC------------------------ccCeEEEEeCCCcHHHHHHHH
Confidence 6789999999999999999999999999999988 678999999999864 45555
Q ss_pred Hhhc
Q 020452 274 KLKH 277 (326)
Q Consensus 274 ~l~~ 277 (326)
++..
T Consensus 200 ~~~~ 203 (456)
T PRK10590 200 KLLH 203 (456)
T ss_pred HHcC
Confidence 5543
No 14
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-36 Score=271.93 Aligned_cols=194 Identities=38% Similarity=0.626 Sum_probs=169.4
Q ss_pred cccccCCCC--HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020452 34 DAWNELRLH--PLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111 (326)
Q Consensus 34 ~~f~~l~l~--~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~ 111 (326)
..|++++.+ +++++++..+||..+||+|..+||.++ +++|+++.|+||||||++|++|+++.+++....
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll-~~KDVvveavTGSGKTlAFllP~le~i~rr~~~-------- 74 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLL-KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAK-------- 74 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHh-cCCceEEEcCCCCCchhhHHHHHHHHHHhhccC--------
Confidence 368877655 999999999999999999999999995 899999999999999999999999999765422
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC-CCcEEEEEEcCCCHHHHHHHHh-cCCCEEEeCcHHHHHHHh
Q 020452 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG-INVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMS 189 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~-~~~~v~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~ll~ 189 (326)
......-+|||+|||||+.||.+.+..+..+ .++.+.+++||.........+. .++.|+|||||+|.+++.
T Consensus 75 -------~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~ 147 (567)
T KOG0345|consen 75 -------TPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQ 147 (567)
T ss_pred -------CCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHh
Confidence 1122468999999999999999999999887 6788999999988777665544 588999999999999998
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
+. ....++.++.+||+||||+++++||...++.|++.|| +.+++=+||||....
T Consensus 148 ~~-~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LP------------------------KQRRTGLFSATq~~~ 201 (567)
T KOG0345|consen 148 RE-AEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLP------------------------KQRRTGLFSATQTQE 201 (567)
T ss_pred ch-hhhccccccceEEecchHhHhcccHHHHHHHHHHhcc------------------------cccccccccchhhHH
Confidence 74 2335577999999999999999999999999999999 789999999999755
No 15
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.5e-35 Score=282.12 Aligned_cols=199 Identities=37% Similarity=0.632 Sum_probs=177.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
+|++|+|++.++++|+++||..|+++|.++|+.++ +|+|++++||||+|||++|++|+++.+....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~------------- 67 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPAL-DGRDVLGSAPTGTGKTAAFLLPALQHLLDFP------------- 67 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhhcc-------------
Confidence 69999999999999999999999999999999996 8999999999999999999999999886431
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
....+.+++||++||++|+.|+++.+..+....++++..++|+.....+...+..+++|+|+||++|.+++..+.
T Consensus 68 ---~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~-- 142 (434)
T PRK11192 68 ---RRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN-- 142 (434)
T ss_pred ---ccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--
Confidence 112335699999999999999999999999999999999999999888888888889999999999999997653
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC--cHHHH
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL--SADFR 272 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~--~~~~~ 272 (326)
..+.++++||+||||+|++++|...+..+...++ ...|+++||||++. ..++.
T Consensus 143 -~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~------------------------~~~q~~~~SAT~~~~~~~~~~ 197 (434)
T PRK11192 143 -FDCRAVETLILDEADRMLDMGFAQDIETIAAETR------------------------WRKQTLLFSATLEGDAVQDFA 197 (434)
T ss_pred -cCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCc------------------------cccEEEEEEeecCHHHHHHHH
Confidence 6688999999999999999999999999998887 66899999999974 35677
Q ss_pred HHhhc
Q 020452 273 KKLKH 277 (326)
Q Consensus 273 ~~l~~ 277 (326)
+++..
T Consensus 198 ~~~~~ 202 (434)
T PRK11192 198 ERLLN 202 (434)
T ss_pred HHHcc
Confidence 77643
No 16
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=266.24 Aligned_cols=219 Identities=43% Similarity=0.645 Sum_probs=188.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
...|++|||++++.+.++++|+..|||+|..+||.++ .|+|++.+|.||||||.+|.+|+++++..+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkIL-eGrdcig~AkTGsGKT~AFaLPil~rLsed------------ 72 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKIL-EGRDCIGCAKTGSGKTAAFALPILNRLSED------------ 72 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHh-cccccccccccCCCcchhhhHHHHHhhccC------------
Confidence 4579999999999999999999999999999999996 999999999999999999999999998554
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC-
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG- 191 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~- 191 (326)
..+..++|++|||+|+.|+.+.|..+++..++++.+++||++.-.+...+..++|++|+|||++.+++.+.
T Consensus 73 --------P~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~ 144 (442)
T KOG0340|consen 73 --------PYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNL 144 (442)
T ss_pred --------CCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCC
Confidence 34668999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHH
Q 020452 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 271 (326)
......+++++++|+||||++++..|-+.+..+.+.+| ..+|+++||||+.+.
T Consensus 145 ~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP------------------------~~RQtLlfSATitd~--- 197 (442)
T KOG0340|consen 145 GVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLP------------------------KPRQTLLFSATITDT--- 197 (442)
T ss_pred ccchhhhhceeeEEecchhhhhccchhhHHhhhhccCC------------------------CccceEEEEeehhhH---
Confidence 23345689999999999999999999999999999999 779999999999743
Q ss_pred HHHhhcccccc-----ccccCccccHHHHHHHh
Q 020452 272 RKKLKHGSLKL-----KQSVNGLNSIETLSERA 299 (326)
Q Consensus 272 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~ 299 (326)
.+-+.....+. -....+...++.|.+.|
T Consensus 198 i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~y 230 (442)
T KOG0340|consen 198 IKQLFGCPITKSIAFELEVIDGVSTVETLYQGY 230 (442)
T ss_pred HHHhhcCCcccccceEEeccCCCCchhhhhhhe
Confidence 33333222221 12234556666666555
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.3e-35 Score=282.31 Aligned_cols=187 Identities=42% Similarity=0.683 Sum_probs=170.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
.+|++|+|++.++++|.++||..|+|+|+++||.++ +|+|++++||||||||++|++|+++.+...
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l-~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------------- 69 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAIL-AGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------------- 69 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHhhhc-------------
Confidence 589999999999999999999999999999999995 899999999999999999999999987322
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~ 192 (326)
...+++||++||++|+.|+.+.++.+.... ++++..++|+.+...+...+..+++|+|+||+++.+++.++.
T Consensus 70 -------~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~ 142 (460)
T PRK11776 70 -------RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT 142 (460)
T ss_pred -------cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC
Confidence 224589999999999999999999988754 789999999999988888888899999999999999997653
Q ss_pred cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
..++++++||+||||+|++++|...+..++..++ ..+|+++||||++..
T Consensus 143 ---~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~------------------------~~~q~ll~SAT~~~~ 191 (460)
T PRK11776 143 ---LDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAP------------------------ARRQTLLFSATYPEG 191 (460)
T ss_pred ---ccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCC------------------------cccEEEEEEecCcHH
Confidence 6688999999999999999999999999999998 778999999999854
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.6e-35 Score=289.76 Aligned_cols=189 Identities=39% Similarity=0.697 Sum_probs=171.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~ 111 (326)
...+|++|+|++.++++|.++||..|+|+|.++||.++ .|+|++++||||||||++|++|+++.+...
T Consensus 4 ~~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll-~g~dvl~~ApTGsGKT~af~lpll~~l~~~----------- 71 (629)
T PRK11634 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLL-NGRDVLGMAQTGSGKTAAFSLPLLHNLDPE----------- 71 (629)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----------
Confidence 34579999999999999999999999999999999995 899999999999999999999999887432
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhc
Q 020452 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
..++++||++||++||.|+++.+..+.+.. ++.+..++|+.....+...+..+++|+|+||+++.+++..
T Consensus 72 ---------~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r 142 (629)
T PRK11634 72 ---------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR 142 (629)
T ss_pred ---------cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc
Confidence 235689999999999999999999988765 7899999999998888888888999999999999999976
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.. ..++++++||+||||.|++++|...+..++..++ ..+|+++||||++..
T Consensus 143 ~~---l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp------------------------~~~q~llfSAT~p~~ 193 (629)
T PRK11634 143 GT---LDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP------------------------EGHQTALFSATMPEA 193 (629)
T ss_pred CC---cchhhceEEEeccHHHHhhcccHHHHHHHHHhCC------------------------CCCeEEEEEccCChh
Confidence 53 6789999999999999999999999999999998 779999999999865
No 19
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-36 Score=258.61 Aligned_cols=190 Identities=31% Similarity=0.556 Sum_probs=175.9
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020452 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 109 (326)
Q Consensus 30 ~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~ 109 (326)
-+.+.+|++|||.++++++++..||++|+.+|+.|++.++ .|+|++++|.+|+|||.+|.+.+++.+...
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~Il-kGrdViaQaqSGTGKTa~~si~vlq~~d~~--------- 92 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQIL-KGRDVIAQAQSGTGKTATFSISVLQSLDIS--------- 92 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhh-cccceEEEecCCCCceEEEEeeeeeecccc---------
Confidence 3567799999999999999999999999999999999996 999999999999999999999888876322
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHh
Q 020452 110 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~ 189 (326)
.+..+++|+.|||||+.|+.+.+..++...++++..+.||.+..+..+.+..+.|++.|||++++++++
T Consensus 93 -----------~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmik 161 (400)
T KOG0328|consen 93 -----------VRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIK 161 (400)
T ss_pred -----------cceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHH
Confidence 335699999999999999999999999999999999999999999888888999999999999999998
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
.+. ..-..++++|+||||.|++.+|.+++..+++.|| +..|++++|||+|.
T Consensus 162 r~~---L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp------------------------~~~Qvv~~SATlp~ 212 (400)
T KOG0328|consen 162 RRS---LRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLP------------------------PGAQVVLVSATLPH 212 (400)
T ss_pred hcc---ccccceeEEEeccHHHHHHhhHHHHHHHHHHhCC------------------------CCceEEEEeccCcH
Confidence 765 6678899999999999999999999999999999 89999999999983
No 20
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-36 Score=280.39 Aligned_cols=211 Identities=36% Similarity=0.566 Sum_probs=187.4
Q ss_pred cCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHh
Q 020452 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 103 (326)
Q Consensus 24 ~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~ 103 (326)
++..+.|.++.+|.+-.+.+.+...++..||..|||+|+.+||.+ ..|+|+++||+||+|||.+|++|++..++.....
T Consensus 64 ~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i-~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~ 142 (482)
T KOG0335|consen 64 VSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPII-SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPE 142 (482)
T ss_pred ccCCccCCCcccccccchhHHHhhccccccccCCCcceeecccee-ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcc
Confidence 456778899999999999999999999999999999999999998 6999999999999999999999999999876432
Q ss_pred hhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHH
Q 020452 104 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183 (326)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~ 183 (326)
.. .......+|+++|++||||||.|++.+.+++....+++++..+|+.+...+.+.+..+|+|+|+||++
T Consensus 143 ~~----------~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGr 212 (482)
T KOG0335|consen 143 DR----------GESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGR 212 (482)
T ss_pred cC----------cccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCch
Confidence 10 01111246899999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEe
Q 020452 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262 (326)
Q Consensus 184 l~~ll~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 262 (326)
|.+++..+. +.+++++++|+||||+|+| ++|+..|..|+..+.+.+. ..+|+++||
T Consensus 213 L~d~~e~g~---i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~--------------------~~~qt~mFS 269 (482)
T KOG0335|consen 213 LKDLIERGK---ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPK--------------------NNRQTLLFS 269 (482)
T ss_pred hhhhhhcce---eehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCc--------------------cceeEEEEe
Confidence 999998664 8899999999999999999 9999999999998874321 568999999
Q ss_pred eeccCc
Q 020452 263 ATIALS 268 (326)
Q Consensus 263 ATl~~~ 268 (326)
||++..
T Consensus 270 Atfp~~ 275 (482)
T KOG0335|consen 270 ATFPKE 275 (482)
T ss_pred ccCChh
Confidence 999844
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.3e-35 Score=288.13 Aligned_cols=197 Identities=37% Similarity=0.613 Sum_probs=172.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
.+|++|+|++.++++|.++||..|||+|.++||.++ +|+|++++||||||||++|++|+++.+......
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l-~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~---------- 77 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVAL-PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPAL---------- 77 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc----------
Confidence 369999999999999999999999999999999995 899999999999999999999999988643210
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCc
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
.......+++|||+||++|+.|+++.+..+....++++..++|+.....+...+..+++|||+||++|++++....
T Consensus 78 ---~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~- 153 (572)
T PRK04537 78 ---ADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK- 153 (572)
T ss_pred ---cccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-
Confidence 0011235799999999999999999999999999999999999999988888888889999999999999986532
Q ss_pred ccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 194 ~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
...+..+++|||||||+|++.+|...+..++..++.. ..+|+++||||++..
T Consensus 154 -~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~----------------------~~~q~ll~SATl~~~ 205 (572)
T PRK04537 154 -VVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER----------------------GTRQTLLFSATLSHR 205 (572)
T ss_pred -ccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc----------------------cCceEEEEeCCccHH
Confidence 3567889999999999999999999999999998721 258999999999854
No 22
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-36 Score=277.15 Aligned_cols=208 Identities=32% Similarity=0.530 Sum_probs=174.2
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
..|..|||++.+...|+. |++..||.+|.++||.++ +|+|++|.++||||||++|++|+++.+.....
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL-~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~---------- 204 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLL-EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP---------- 204 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhh-cCcceEEEcCCCCcccHHHHHHHHHHHHhcCc----------
Confidence 459999999999999977 999999999999999996 89999999999999999999999999976643
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC-cEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN-VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~ 191 (326)
+..+..|+.+||++||||||.|+|+.++++.+.+. +-.+.+.||.........+++++.|+|+|||||.+++.+.
T Consensus 205 ----ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT 280 (708)
T KOG0348|consen 205 ----KIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT 280 (708)
T ss_pred ----cccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc
Confidence 23356789999999999999999999999988654 3346788998888889999999999999999999999865
Q ss_pred CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
. .+.+++++|||+||+|++++.||...+..|+..+....... |.... -.+..|.+++|||+.+..
T Consensus 281 ~--~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e---------~~~~~--lp~q~q~mLlSATLtd~V 345 (708)
T KOG0348|consen 281 K--SIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAE---------CKDPK--LPHQLQNMLLSATLTDGV 345 (708)
T ss_pred c--hheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchh---------ccccc--ccHHHHhHhhhhhhHHHH
Confidence 3 46788999999999999999999999999999885211100 10000 002479999999997553
No 23
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-36 Score=272.68 Aligned_cols=209 Identities=35% Similarity=0.559 Sum_probs=190.5
Q ss_pred CcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhh
Q 020452 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104 (326)
Q Consensus 25 ~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~ 104 (326)
.+..+|.++++|+.+++++.++.++++.-|.+|||+|.+++|..+ .|+|++-.|.||||||.+|+.|++.++...+
T Consensus 214 ~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptal-sgrdvigIAktgSgktaAfi~pm~~himdq~--- 289 (731)
T KOG0339|consen 214 SGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTAL-SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP--- 289 (731)
T ss_pred ccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCccccccccccc-ccccchheeeccCcchhHHHHHHHHHhcchh---
Confidence 455678999999999999999999999999999999999999995 9999999999999999999999999987653
Q ss_pred hhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH
Q 020452 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l 184 (326)
....+.+|.+||+||||+||.|++..+++|++..++++++++||.+.+++...+..++.||||||+||
T Consensus 290 ------------eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRl 357 (731)
T KOG0339|consen 290 ------------ELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRL 357 (731)
T ss_pred ------------hhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHH
Confidence 34557789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeee
Q 020452 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264 (326)
Q Consensus 185 ~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SAT 264 (326)
.+++.-. ..++.++.+|||||+|+|.++||..++..|...+. +.+|+++||||
T Consensus 358 id~VkmK---atn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir------------------------pdrQtllFsaT 410 (731)
T KOG0339|consen 358 IDMVKMK---ATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR------------------------PDRQTLLFSAT 410 (731)
T ss_pred HHHHHhh---cccceeeeEEEEechhhhhccccHHHHHHHHhhcC------------------------CcceEEEeecc
Confidence 9999644 48899999999999999999999999999999998 89999999999
Q ss_pred ccCc-HHHHHHhh
Q 020452 265 IALS-ADFRKKLK 276 (326)
Q Consensus 265 l~~~-~~~~~~l~ 276 (326)
++-. +.+++.+.
T Consensus 411 f~~kIe~lard~L 423 (731)
T KOG0339|consen 411 FKKKIEKLARDIL 423 (731)
T ss_pred chHHHHHHHHHHh
Confidence 9854 33444433
No 24
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=267.33 Aligned_cols=209 Identities=34% Similarity=0.542 Sum_probs=179.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
..+|++|+|++.+++++.+.||..||-+|+.+||.++ .|+|++..|.||||||.+|++|+++.++..+.-
T Consensus 18 ~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaL-EgKDvvarArTGSGKT~AYliPllqkll~~k~t--------- 87 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLAL-EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKT--------- 87 (569)
T ss_pred hccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhh-cCcceeeeeccCCCchHHHHHHHHHHHHHhhhc---------
Confidence 3699999999999999999999999999999999996 899999999999999999999999999876421
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC--CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhc
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI--NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
.....++.++|++||+|||+|++..+.++.... .+++.-+.++++......++...++|+|+||++++.++..
T Consensus 88 -----~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~ 162 (569)
T KOG0346|consen 88 -----NDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAA 162 (569)
T ss_pred -----ccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhh
Confidence 144668899999999999999999999887654 3667777777777777788899999999999999999986
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHH
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 270 (326)
+. ...++.+.+||+||||.++..||.+++..+.+.|| +..|.++||||+++...
T Consensus 163 ~~--~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LP------------------------r~~Q~~LmSATl~dDv~ 216 (569)
T KOG0346|consen 163 GV--LEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLP------------------------RIYQCFLMSATLSDDVQ 216 (569)
T ss_pred cc--chhhhheeeEEechhhhhhhcccHHHHHHHHHhCC------------------------chhhheeehhhhhhHHH
Confidence 53 25678899999999999999999999999999999 78999999999985544
Q ss_pred HHHH-hhcccccc
Q 020452 271 FRKK-LKHGSLKL 282 (326)
Q Consensus 271 ~~~~-l~~~~~~~ 282 (326)
-.+. ..+++..+
T Consensus 217 ~LKkL~l~nPviL 229 (569)
T KOG0346|consen 217 ALKKLFLHNPVIL 229 (569)
T ss_pred HHHHHhccCCeEE
Confidence 3333 34444443
No 25
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=7.6e-35 Score=267.54 Aligned_cols=236 Identities=33% Similarity=0.522 Sum_probs=195.5
Q ss_pred cCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHh
Q 020452 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 103 (326)
Q Consensus 24 ~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~ 103 (326)
+....+|.|+.+|++.+|+..+++.+.+.||..|+|+|+.+||..+ +.+|+|..+.||||||.+|++|++..+.+...-
T Consensus 235 ~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~l-Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~ 313 (673)
T KOG0333|consen 235 IKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGL-QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPM 313 (673)
T ss_pred ecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchh-ccCCeeeEEeccCCccccchhhHHHHHHcCCCc
Confidence 4567889999999999999999999999999999999999999885 899999999999999999999999988654211
Q ss_pred hhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHH
Q 020452 104 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183 (326)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~ 183 (326)
. .....-.+|+++|++|||+|++|+.+.-.++++.++++++.+.||...+++...+..+|+|+|+||++
T Consensus 314 ~-----------~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgr 382 (673)
T KOG0333|consen 314 A-----------RLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGR 382 (673)
T ss_pred c-----------hhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchH
Confidence 0 01123458899999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCC-CcccccccccccccCCCCceEEEEe
Q 020452 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEG-QSEQTQTCVTVSSLQRKKRQTLVFS 262 (326)
Q Consensus 184 l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~q~i~~S 262 (326)
|.+.+.+.. ..++++.++|+||||+|+|+||.+++..++..+|..+.+.-. .-........+.+..+..+|+++||
T Consensus 383 Lid~Lenr~---lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mft 459 (673)
T KOG0333|consen 383 LIDSLENRY---LVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFT 459 (673)
T ss_pred HHHHHHHHH---HHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEe
Confidence 999997653 778999999999999999999999999999999966544210 0011112222333344669999999
Q ss_pred eeccCc-HHHHHH
Q 020452 263 ATIALS-ADFRKK 274 (326)
Q Consensus 263 ATl~~~-~~~~~~ 274 (326)
||++-. +.+++.
T Consensus 460 atm~p~verlar~ 472 (673)
T KOG0333|consen 460 ATMPPAVERLARS 472 (673)
T ss_pred cCCChHHHHHHHH
Confidence 999854 334333
No 26
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-35 Score=289.79 Aligned_cols=207 Identities=37% Similarity=0.625 Sum_probs=190.2
Q ss_pred hccCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHH
Q 020452 22 ELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEER 101 (326)
Q Consensus 22 ~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~ 101 (326)
-.+...++|+++.+|.+.|++..|+..++++||..|+|+|.+|||+++ +|+|+|.+|.||||||++|++|++.+....+
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~Im-sGrdvIgvakTgSGKT~af~LPmirhi~dQr 431 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIM-SGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR 431 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhc-cCcceEEeeccCCccchhhhcchhhhhhcCC
Confidence 355677899999999999999999999999999999999999999995 9999999999999999999999997765443
Q ss_pred HhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCc
Q 020452 102 EKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTP 181 (326)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp 181 (326)
+...+.||.+||++||++|+.|+++.++.|++.+++++++++|+.....+...+++++.|+||||
T Consensus 432 ---------------~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tp 496 (997)
T KOG0334|consen 432 ---------------PLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTP 496 (997)
T ss_pred ---------------ChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEecc
Confidence 22345589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEE
Q 020452 182 GRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261 (326)
Q Consensus 182 ~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~ 261 (326)
+++.+++..+..+..++.++.+||+||||+|++++|..++..|+..++ +.+|+++|
T Consensus 497 GRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr------------------------pdrQtvlf 552 (997)
T KOG0334|consen 497 GRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR------------------------PDRQTVLF 552 (997)
T ss_pred chhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc------------------------hhhhhhhh
Confidence 999999977666677888888999999999999999999999999998 88999999
Q ss_pred eeeccCc
Q 020452 262 SATIALS 268 (326)
Q Consensus 262 SATl~~~ 268 (326)
|||++..
T Consensus 553 Satfpr~ 559 (997)
T KOG0334|consen 553 SATFPRS 559 (997)
T ss_pred hhhhhHH
Confidence 9999855
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.4e-33 Score=269.19 Aligned_cols=206 Identities=39% Similarity=0.584 Sum_probs=173.2
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020452 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 109 (326)
Q Consensus 30 ~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~ 109 (326)
.+....|.+++|++.++++|.++||..|+++|.++|+.++ +|+|+++.+|||||||++|++|+++.+......
T Consensus 83 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~-~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~------ 155 (475)
T PRK01297 83 QEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTL-AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPP------ 155 (475)
T ss_pred ccCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcc------
Confidence 3445679999999999999999999999999999999985 899999999999999999999999998654211
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh-cCCCEEEeCcHHHHHHH
Q 020452 110 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELM 188 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~ll 188 (326)
.....+.+++|||+||++|+.|+++.++.+.+..++.+..++|+.....+.+.+. ..++|+|+||++|++++
T Consensus 156 -------~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~ 228 (475)
T PRK01297 156 -------KERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFN 228 (475)
T ss_pred -------cccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 1111235799999999999999999999999988999999999988777666554 46899999999999988
Q ss_pred hcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
..+. ..++++++|||||+|++++++|...+..++..++.. ..+|++++|||++..
T Consensus 229 ~~~~---~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~----------------------~~~q~i~~SAT~~~~ 283 (475)
T PRK01297 229 QRGE---VHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK----------------------EERQTLLFSATFTDD 283 (475)
T ss_pred HcCC---cccccCceEEechHHHHHhcccHHHHHHHHHhCCCC----------------------CCceEEEEEeecCHH
Confidence 6543 678999999999999999999999999999888621 357999999999743
Q ss_pred -HHHHHH
Q 020452 269 -ADFRKK 274 (326)
Q Consensus 269 -~~~~~~ 274 (326)
.++.+.
T Consensus 284 ~~~~~~~ 290 (475)
T PRK01297 284 VMNLAKQ 290 (475)
T ss_pred HHHHHHH
Confidence 334333
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.3e-32 Score=260.85 Aligned_cols=190 Identities=34% Similarity=0.568 Sum_probs=169.6
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~ 110 (326)
+..++|+++++++.+.++|.++||..|+|+|.++|+.++ +|+|++++||||||||++|++|+++.+...
T Consensus 25 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~-~~~d~ii~apTGsGKT~~~~l~~l~~~~~~---------- 93 (401)
T PTZ00424 25 EIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPIL-DGYDTIGQAQSGTGKTATFVIAALQLIDYD---------- 93 (401)
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhcCC----------
Confidence 356899999999999999999999999999999999995 899999999999999999999999876311
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhc
Q 020452 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
..+.++||++|+++|+.|+.+.+..++...++.+..+.|+.........+..+++|+|+||+++.+++..
T Consensus 94 ----------~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~ 163 (401)
T PTZ00424 94 ----------LNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK 163 (401)
T ss_pred ----------CCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh
Confidence 2356899999999999999999999988888888889999888777777777899999999999999876
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
+. ..+++++++|+||+|++++.++...+..++..++ ...|++++|||+++.
T Consensus 164 ~~---~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~~ 214 (401)
T PTZ00424 164 RH---LRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP------------------------PDVQVALFSATMPNE 214 (401)
T ss_pred CC---cccccccEEEEecHHHHHhcchHHHHHHHHhhCC------------------------CCcEEEEEEecCCHH
Confidence 53 5688999999999999999999888999998887 678999999999854
No 29
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-33 Score=251.81 Aligned_cols=206 Identities=35% Similarity=0.654 Sum_probs=185.4
Q ss_pred cCCCCcchhhccCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHH
Q 020452 13 SNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~ 92 (326)
.++++..+.+.+-+..+.+-.++|++|+|.+.++++++..||.+|+.+|+.||.+++ .|.|+++++++|+|||.+|.++
T Consensus 5 ~~g~~~~e~~~~iesn~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~ 83 (397)
T KOG0327|consen 5 DNGPDGMEPEGVIESNWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLIS 83 (397)
T ss_pred cCCCcccCccccccccHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHH
Confidence 567777777888888999999999999999999999999999999999999999885 8999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHH-HHHh
Q 020452 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE-RLLK 171 (326)
Q Consensus 93 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~-~~~~ 171 (326)
+++.+-... ...++++++|||+|+.|+......++...+.++..+.|+.....+. ....
T Consensus 84 iLq~iD~~~--------------------ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~ 143 (397)
T KOG0327|consen 84 ILQQIDMSV--------------------KETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLK 143 (397)
T ss_pred HHhhcCcch--------------------HHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhc
Confidence 999873322 2348999999999999999999999999999999999998877444 4444
Q ss_pred cCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCccccccccccccc
Q 020452 172 ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251 (326)
Q Consensus 172 ~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (326)
..++|+|+||+++.++++.+. ...+.++++|+||+|.|+..+|.+.+..++..+|
T Consensus 144 ~~~hivvGTpgrV~dml~~~~---l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp---------------------- 198 (397)
T KOG0327|consen 144 DKPHIVVGTPGRVFDMLNRGS---LSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELP---------------------- 198 (397)
T ss_pred cCceeecCCchhHHHhhcccc---ccccceeEEeecchHhhhccchHHHHHHHHHHcC----------------------
Confidence 568999999999999997663 6678899999999999999999999999999999
Q ss_pred CCCCceEEEEeeecc
Q 020452 252 QRKKRQTLVFSATIA 266 (326)
Q Consensus 252 ~~~~~q~i~~SATl~ 266 (326)
...|++++|||+|
T Consensus 199 --~~vQv~l~SAT~p 211 (397)
T KOG0327|consen 199 --SDVQVVLLSATMP 211 (397)
T ss_pred --cchhheeecccCc
Confidence 7889999999998
No 30
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=252.70 Aligned_cols=198 Identities=35% Similarity=0.550 Sum_probs=177.0
Q ss_pred ccccccccccc-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 020452 28 EISTEFDAWNE-LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGK 106 (326)
Q Consensus 28 ~~~~~~~~f~~-l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~ 106 (326)
++|.|..+|++ |.-.+++++.+++.||.+|+|+|.++||.++ +|+|++.+|.||+|||++|++|-+.++.....
T Consensus 213 pIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~L-QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~---- 287 (629)
T KOG0336|consen 213 PIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILL-QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPK---- 287 (629)
T ss_pred cCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceee-cCcceEEEEecCCCcCHHHhccceeeeeccch----
Confidence 48999999986 5888999999999999999999999999995 99999999999999999999998887754322
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH
Q 020452 107 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 186 (326)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ 186 (326)
+.....++.+|+++||++|+.|+.-.+.++.- -+.+.++++|+.+...+.+.++.+.+|+++||++|.+
T Consensus 288 ----------~~~qr~~p~~lvl~ptreLalqie~e~~kysy-ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlnd 356 (629)
T KOG0336|consen 288 ----------RREQRNGPGVLVLTPTRELALQIEGEVKKYSY-NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLND 356 (629)
T ss_pred ----------hhhccCCCceEEEeccHHHHHHHHhHHhHhhh-cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhh
Confidence 22245678999999999999999988877643 4788899999999999999999999999999999999
Q ss_pred HHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 187 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 187 ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
+...+ ..++.++.+||+||||+|++++|..++.+|+--++ +.+|+++.|||+|
T Consensus 357 L~~~n---~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR------------------------PDRqtvmTSATWP 409 (629)
T KOG0336|consen 357 LQMDN---VINLASITYLVLDEADRMLDMGFEPQIRKILLDIR------------------------PDRQTVMTSATWP 409 (629)
T ss_pred hhhcC---eeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC------------------------CcceeeeecccCc
Confidence 98665 48899999999999999999999999999998887 8999999999999
Q ss_pred Cc
Q 020452 267 LS 268 (326)
Q Consensus 267 ~~ 268 (326)
..
T Consensus 410 ~~ 411 (629)
T KOG0336|consen 410 EG 411 (629)
T ss_pred hH
Confidence 54
No 31
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=9.7e-32 Score=231.44 Aligned_cols=185 Identities=49% Similarity=0.816 Sum_probs=166.9
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 020452 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA 115 (326)
Q Consensus 36 f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~ 115 (326)
|+++++++.+.+.|.++|+..|+++|.++++.++ +|+|+++++|||+|||++|++|+++.+....
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~-~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------------- 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLL-SGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------------- 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--------------
Confidence 8899999999999999999999999999999995 7999999999999999999999999886541
Q ss_pred hhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCccc
Q 020452 116 EKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195 (326)
Q Consensus 116 ~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~ 195 (326)
...+++++|++|+++|+.|+.+.++.+....++.+..++|+.........+..+++|+|+||+++.+++.+..
T Consensus 66 ----~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--- 138 (203)
T cd00268 66 ----KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--- 138 (203)
T ss_pred ----ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---
Confidence 1236799999999999999999999998888899999999998877777676789999999999999887654
Q ss_pred ccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 196 ~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
..+.+++++|+||+|.+.+.++...+..++..++ ..+|++++|||++
T Consensus 139 ~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~------------------------~~~~~~~~SAT~~ 185 (203)
T cd00268 139 LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLP------------------------KDRQTLLFSATMP 185 (203)
T ss_pred CChhhCCEEEEeChHHhhccChHHHHHHHHHhCC------------------------cccEEEEEeccCC
Confidence 6678899999999999998889999999999887 6799999999998
No 32
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=246.40 Aligned_cols=187 Identities=41% Similarity=0.699 Sum_probs=173.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
-.|..|||+..+.+++.+-||+.|+|+|++.+|.++ .++|++..+.||||||.||++|+++++....
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliL-e~~dvv~martgsgktaaf~ipm~e~Lk~~s------------ 87 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLIL-EGRDVVGMARTGSGKTAAFLIPMIEKLKSHS------------ 87 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhccccccee-eccccceeeecCCcchhhHHHHHHHHHhhcc------------
Confidence 479999999999999999999999999999999996 9999999999999999999999999985432
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCc
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
..+.+++++.||++|+.|..+..+.+++..++++.+++|+...+++...+..++|||++||+++..+...-.
T Consensus 88 -------~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~- 159 (529)
T KOG0337|consen 88 -------QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT- 159 (529)
T ss_pred -------ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee-
Confidence 457899999999999999999999999999999999999999999999999999999999999987765432
Q ss_pred ccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 194 ~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
..++.+.+|||||+|.+.++||.+.+..++.+++ ..+|+++||||+|.
T Consensus 160 --l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~------------------------~~~QTllfSatlp~ 207 (529)
T KOG0337|consen 160 --LTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLP------------------------ESRQTLLFSATLPR 207 (529)
T ss_pred --ccccceeeeeehhhhHHHhhhhHHHHHHHHHhCC------------------------CcceEEEEeccCch
Confidence 6789999999999999999999999999999999 67899999999983
No 33
>PRK02362 ski2-like helicase; Provisional
Probab=99.98 E-value=1.3e-31 Score=270.97 Aligned_cols=192 Identities=24% Similarity=0.299 Sum_probs=165.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
.|++++|++.+++++++.||..|+|+|.++++..+.+|+|++++||||||||++|.+|++..+..
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------------- 66 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------------- 66 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------------
Confidence 58999999999999999999999999999999855789999999999999999999999988731
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
+.++||++|+++||.|+++.++.+.. .++++..++|+...... ....++|+|+||+++..+++++.
T Consensus 67 --------~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~-- 132 (737)
T PRK02362 67 --------GGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGA-- 132 (737)
T ss_pred --------CCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcCh--
Confidence 34899999999999999999997653 58899999998764332 23468999999999998887643
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHH
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 274 (326)
..+++++++|+||+|.+.+.+++..++.++.++.... ...|+|++|||++|..++.+|
T Consensus 133 -~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~---------------------~~~qii~lSATl~n~~~la~w 190 (737)
T PRK02362 133 -PWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN---------------------PDLQVVALSATIGNADELADW 190 (737)
T ss_pred -hhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC---------------------CCCcEEEEcccCCCHHHHHHH
Confidence 4578899999999999998889999998887775321 458999999999999999999
Q ss_pred hhc
Q 020452 275 LKH 277 (326)
Q Consensus 275 l~~ 277 (326)
+..
T Consensus 191 l~~ 193 (737)
T PRK02362 191 LDA 193 (737)
T ss_pred hCC
Confidence 974
No 34
>PRK00254 ski2-like helicase; Provisional
Probab=99.98 E-value=2.5e-31 Score=268.28 Aligned_cols=190 Identities=22% Similarity=0.319 Sum_probs=167.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
+|+++++++.+.+.+++.||..|+|+|.++++..+.+|+|+++++|||||||++|.+|++..+...
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------------- 67 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------------- 67 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--------------
Confidence 688999999999999999999999999999997556999999999999999999999999887532
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
+.++||++|+++|+.|+++.+..+. ..++++..++|+...... ....++|+|+||+++..++++..
T Consensus 68 --------~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~-- 133 (720)
T PRK00254 68 --------GGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGS-- 133 (720)
T ss_pred --------CCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCc--
Confidence 3489999999999999999998864 468999999998765332 23568999999999988887543
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHH
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 274 (326)
..+++++++|+||+|.+.+.+++..++.++..++ ...|+|++|||++|..++.+|
T Consensus 134 -~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~------------------------~~~qiI~lSATl~n~~~la~w 188 (720)
T PRK00254 134 -SWIKDVKLVVADEIHLIGSYDRGATLEMILTHML------------------------GRAQILGLSATVGNAEELAEW 188 (720)
T ss_pred -hhhhcCCEEEEcCcCccCCccchHHHHHHHHhcC------------------------cCCcEEEEEccCCCHHHHHHH
Confidence 4578999999999999998889999999999887 568999999999999999999
Q ss_pred hhc
Q 020452 275 LKH 277 (326)
Q Consensus 275 l~~ 277 (326)
+..
T Consensus 189 l~~ 191 (720)
T PRK00254 189 LNA 191 (720)
T ss_pred hCC
Confidence 975
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.98 E-value=3.5e-31 Score=266.11 Aligned_cols=206 Identities=22% Similarity=0.265 Sum_probs=163.3
Q ss_pred cccccccccC--CCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 020452 30 STEFDAWNEL--RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 107 (326)
Q Consensus 30 ~~~~~~f~~l--~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~ 107 (326)
|.....|..+ .+++.+.++|+++||+.|+++|.++|+.+ .+|+|+++++|||||||++|++|+++.+..+
T Consensus 8 p~~~a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~i-l~G~nvvv~apTGSGKTla~~LPiL~~l~~~------- 79 (742)
T TIGR03817 8 PARAGRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELA-HAGRHVVVATGTASGKSLAYQLPVLSALADD------- 79 (742)
T ss_pred CCCCcccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHH-HCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-------
Confidence 3333344444 38999999999999999999999999999 4999999999999999999999999988542
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHH
Q 020452 108 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~l 187 (326)
.+.++|||+||++|+.|+.+.++.+. ..++++..+.|+..... ...+..+++|+|+||+++...
T Consensus 80 --------------~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~-r~~i~~~~~IivtTPd~L~~~ 143 (742)
T TIGR03817 80 --------------PRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTEE-RRWAREHARYVLTNPDMLHRG 143 (742)
T ss_pred --------------CCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHH-HHHHhcCCCEEEEChHHHHHh
Confidence 24689999999999999999999987 45788888888877544 455667799999999998753
Q ss_pred H-hcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 188 M-SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 188 l-~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
+ .....+...++++++||+||||.|.+ .|+..+..++++++.... .....+|++++|||++
T Consensus 144 ~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~-----------------~~g~~~q~i~~SATi~ 205 (742)
T TIGR03817 144 ILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCA-----------------RYGASPVFVLASATTA 205 (742)
T ss_pred hccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHH-----------------hcCCCCEEEEEecCCC
Confidence 3 22223334588999999999999975 588887777776642110 0014589999999999
Q ss_pred CcHHHHHHhhc
Q 020452 267 LSADFRKKLKH 277 (326)
Q Consensus 267 ~~~~~~~~l~~ 277 (326)
|+.++.+++..
T Consensus 206 n~~~~~~~l~g 216 (742)
T TIGR03817 206 DPAAAASRLIG 216 (742)
T ss_pred CHHHHHHHHcC
Confidence 99988888654
No 36
>PRK01172 ski2-like helicase; Provisional
Probab=99.96 E-value=7.6e-29 Score=249.04 Aligned_cols=191 Identities=19% Similarity=0.281 Sum_probs=161.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
.|++++|++.+++.+++.||. ++++|.++++.+ .+|+|+++++|||||||+++.+++++.+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l-~~~~nvlv~apTGSGKTl~a~lail~~l~~--------------- 64 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQL-RKGENVIVSVPTAAGKTLIAYSAIYETFLA--------------- 64 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHH-hcCCcEEEECCCCchHHHHHHHHHHHHHHh---------------
Confidence 588999999999999999995 999999999998 689999999999999999999999887632
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
+.++||++|+++||.|+++.++++. ..+.++...+|+...... ....++|+|+||+++..++.+..
T Consensus 65 --------~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~-- 130 (674)
T PRK01172 65 --------GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDP-- 130 (674)
T ss_pred --------CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCCh--
Confidence 2379999999999999999999864 468899889888754322 23468999999999988886542
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHH
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 274 (326)
..+.+++++|+||+|.+.+.+++..++.++..++... ...|+|++|||++|..++.+|
T Consensus 131 -~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~---------------------~~~riI~lSATl~n~~~la~w 188 (674)
T PRK01172 131 -YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN---------------------PDARILALSATVSNANELAQW 188 (674)
T ss_pred -hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC---------------------cCCcEEEEeCccCCHHHHHHH
Confidence 5578999999999999998888888888877654211 468999999999999999999
Q ss_pred hhcc
Q 020452 275 LKHG 278 (326)
Q Consensus 275 l~~~ 278 (326)
+...
T Consensus 189 l~~~ 192 (674)
T PRK01172 189 LNAS 192 (674)
T ss_pred hCCC
Confidence 8643
No 37
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.96 E-value=5.3e-29 Score=246.19 Aligned_cols=200 Identities=27% Similarity=0.349 Sum_probs=177.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
|++.+.+.++.. |..|||.|.+|||.+ .+|+|+++.||||||||.++.+|++..+.+.. ....
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i-~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---------------~~~~ 70 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEI-HSGENVLIIAPTGSGKTEAAFLPVINELLSLG---------------KGKL 70 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHH-hCCCceEEEcCCCCChHHHHHHHHHHHHHhcc---------------CCCC
Confidence 789999999988 999999999999999 59999999999999999999999999997652 1123
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
..+..+|||+|-|+|.+++.+.++..+..+|+.+...+|+++..+..+...+.+||+|+||+.|.-++... .....|.+
T Consensus 71 ~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~ 149 (814)
T COG1201 71 EDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-KFRELLRD 149 (814)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcC
Confidence 45789999999999999999999999999999999999999999999999999999999999998888654 44466899
Q ss_pred eeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhccc
Q 020452 201 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279 (326)
Q Consensus 201 l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~ 279 (326)
++++|+||+|.+.+..++.++..-+++|.... ...|.|++|||+.++++.++||....
T Consensus 150 vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~---------------------~~~qRIGLSATV~~~~~varfL~g~~ 207 (814)
T COG1201 150 VRYVIVDEIHALAESKRGVQLALSLERLRELA---------------------GDFQRIGLSATVGPPEEVAKFLVGFG 207 (814)
T ss_pred CcEEEeehhhhhhccccchhhhhhHHHHHhhC---------------------cccEEEeehhccCCHHHHHHHhcCCC
Confidence 99999999999998888888887787776331 25899999999999999999998654
No 38
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=5.1e-29 Score=211.07 Aligned_cols=198 Identities=35% Similarity=0.620 Sum_probs=176.4
Q ss_pred ccCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHH
Q 020452 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEERE 102 (326)
Q Consensus 23 ~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~ 102 (326)
...+.+++..-+.|.++-|.|++++++-..||..|+.+|.++||..+ -|.|++.+|.+|-|||.+|.+.-++.+-
T Consensus 31 d~kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqai-lgmdvlcqaksgmgktavfvl~tlqqie---- 105 (387)
T KOG0329|consen 31 DKKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQIE---- 105 (387)
T ss_pred cccCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHh-hcchhheecccCCCceeeeehhhhhhcC----
Confidence 34455667777789999999999999999999999999999999986 7999999999999999999999888762
Q ss_pred hhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCc
Q 020452 103 KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTP 181 (326)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp 181 (326)
...+...++++|.||+||.|+......+.++. ++++.+++||.......+.+++-+||+|+||
T Consensus 106 ----------------pv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTP 169 (387)
T KOG0329|consen 106 ----------------PVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTP 169 (387)
T ss_pred ----------------CCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCc
Confidence 22446789999999999999999999988875 6899999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccccCCCeeEEeecchhHhhhC-CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEE
Q 020452 182 GRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLV 260 (326)
Q Consensus 182 ~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~-~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~ 260 (326)
++++.+.++.. .++++++++|+||||.|+++ ..+..++.|.+..| ...|+++
T Consensus 170 GrilALvr~k~---l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp------------------------~~KQvmm 222 (387)
T KOG0329|consen 170 GRILALVRNRS---LNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMM 222 (387)
T ss_pred HHHHHHHHhcc---CchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCc------------------------ccceeee
Confidence 99999998765 88999999999999999854 56788999999888 7899999
Q ss_pred EeeeccCc
Q 020452 261 FSATIALS 268 (326)
Q Consensus 261 ~SATl~~~ 268 (326)
||||+++.
T Consensus 223 fsatlske 230 (387)
T KOG0329|consen 223 FSATLSKE 230 (387)
T ss_pred eeeecchh
Confidence 99999854
No 39
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.96 E-value=1.2e-28 Score=252.34 Aligned_cols=200 Identities=28% Similarity=0.369 Sum_probs=160.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
+++.+.+.+++ +|..|+|+|.++|+.+ .+|+|++++||||||||++|++|+++.+...... ...
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~i-l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~--------------~~~ 81 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLI-HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE--------------GEL 81 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHH-HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc--------------cCC
Confidence 66777777666 7999999999999998 5899999999999999999999999988653210 111
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHH-------H----cCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEV-------A----KGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~-------~----~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll 188 (326)
..++++||++|+++|+.|+++.+... + ... ++++...+|+.......+.+.+.++|+|+||++|..++
T Consensus 82 ~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll 161 (876)
T PRK13767 82 EDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILL 161 (876)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHh
Confidence 34679999999999999999876532 2 122 67889999999988887778888999999999998887
Q ss_pred hcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.+. .....+.++++||+||+|.+.+..++..+...+.++.... ....|+|++|||+++.
T Consensus 162 ~~~-~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~--------------------~~~~q~IglSATl~~~ 220 (876)
T PRK13767 162 NSP-KFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA--------------------GGEFVRIGLSATIEPL 220 (876)
T ss_pred cCh-hHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc--------------------CCCCeEEEEecccCCH
Confidence 543 2223578999999999999998888877777776665211 1468999999999999
Q ss_pred HHHHHHhhc
Q 020452 269 ADFRKKLKH 277 (326)
Q Consensus 269 ~~~~~~l~~ 277 (326)
+++.+|+..
T Consensus 221 ~~va~~L~~ 229 (876)
T PRK13767 221 EEVAKFLVG 229 (876)
T ss_pred HHHHHHhcC
Confidence 999999864
No 40
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.96 E-value=2.3e-29 Score=236.26 Aligned_cols=190 Identities=34% Similarity=0.547 Sum_probs=169.5
Q ss_pred cccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 020452 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 107 (326)
Q Consensus 28 ~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~ 107 (326)
..+.....|+++.|...++.+|++.+|..|+++|..|||.++ .+.|+|+++.+|+|||++|.+.+++.+..
T Consensus 19 V~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~-~kmDliVQaKSGTGKTlVfsv~av~sl~~-------- 89 (980)
T KOG4284|consen 19 VQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIF-SKMDLIVQAKSGTGKTLVFSVLAVESLDS-------- 89 (980)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhh-cccceEEEecCCCCceEEEEeeeehhcCc--------
Confidence 345666799999999999999999999999999999999995 89999999999999999998888887632
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC-CCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH
Q 020452 108 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG-INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 186 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ 186 (326)
....++++|++|||+++-|+.+.+..++.. .|+++.++.||+........++ .++|+||||||+..
T Consensus 90 ------------~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~q 156 (980)
T KOG4284|consen 90 ------------RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQ 156 (980)
T ss_pred ------------ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHH
Confidence 244679999999999999999999999875 4899999999998776655555 58999999999999
Q ss_pred HHhcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 187 LMSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 187 ll~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
++..+. .+...++++|+||||.+++ ..|...+..|+..|| ..+|+++||||.
T Consensus 157 L~el~~---~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP------------------------~~rQv~a~SATY 209 (980)
T KOG4284|consen 157 LVELGA---MNMSHVRLFVLDEADKLMDTESFQDDINIIINSLP------------------------QIRQVAAFSATY 209 (980)
T ss_pred HHHhcC---CCccceeEEEeccHHhhhchhhHHHHHHHHHHhcc------------------------hhheeeEEeccC
Confidence 998664 7889999999999999997 678999999999999 789999999999
Q ss_pred c
Q 020452 266 A 266 (326)
Q Consensus 266 ~ 266 (326)
+
T Consensus 210 p 210 (980)
T KOG4284|consen 210 P 210 (980)
T ss_pred c
Confidence 8
No 41
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.96 E-value=8.2e-28 Score=200.58 Aligned_cols=162 Identities=40% Similarity=0.585 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 137 (326)
||+|.++++.++ +|+++++.+|||+|||++|+++++..+.+. ...+++|++|+++|+.
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~---------------------~~~~~lii~P~~~l~~ 58 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEG---------------------KDARVLIIVPTRALAE 58 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTT---------------------SSSEEEEEESSHHHHH
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccC---------------------CCceEEEEeecccccc
Confidence 699999999996 899999999999999999999999887542 1238999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEEcCCCHH-HHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCC
Q 020452 138 QVTDHLKEVAKGINVRVVPIVGGMSTE-KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216 (326)
Q Consensus 138 Q~~~~l~~~~~~~~~~v~~~~g~~~~~-~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~ 216 (326)
|+.+.+..++...++++..++|+.... .....+..+++|+|+||++|.+++.... .++.+++++|+||+|.+.+..
T Consensus 59 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~---~~~~~~~~iViDE~h~l~~~~ 135 (169)
T PF00270_consen 59 QQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK---INISRLSLIVIDEAHHLSDET 135 (169)
T ss_dssp HHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS---STGTTESEEEEETHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCcchhhccccccc---cccccceeeccCccccccccc
Confidence 999999999988788999999998865 4445555679999999999999998743 356669999999999999888
Q ss_pred CHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 217 ~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
+...+..++..+... .+.|++++|||++
T Consensus 136 ~~~~~~~i~~~~~~~----------------------~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 136 FRAMLKSILRRLKRF----------------------KNIQIILLSATLP 163 (169)
T ss_dssp HHHHHHHHHHHSHTT----------------------TTSEEEEEESSST
T ss_pred HHHHHHHHHHHhcCC----------------------CCCcEEEEeeCCC
Confidence 888899998887521 3589999999997
No 42
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.8e-28 Score=223.31 Aligned_cols=178 Identities=33% Similarity=0.537 Sum_probs=150.3
Q ss_pred cccccccCCCCHHHHHH----------HHHCCCCCChHHHHHHHHHHHhc--------CCcEEEEcCCCchHHHHHHHHH
Q 020452 32 EFDAWNELRLHPLLMKS----------IYRLGFKEPTPIQKACIPAAAHQ--------GKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~----------l~~~g~~~p~~~Q~~~i~~~l~~--------g~dvlv~apTGsGKT~~~~l~i 93 (326)
....|+.+++++.+... +.++++++..|+|..++|.++.. ++|+.+.||||||||++|.+||
T Consensus 125 slq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPI 204 (620)
T KOG0350|consen 125 SLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPI 204 (620)
T ss_pred ceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHH
Confidence 34457788877765544 89999999999999999988532 5799999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhc-
Q 020452 94 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA- 172 (326)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~- 172 (326)
++.+.... -...|||||+||++|+.|+++.+..+....|+.|+.+.|..+.....+.+..
T Consensus 205 VQ~L~~R~-------------------v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~ 265 (620)
T KOG0350|consen 205 VQLLSSRP-------------------VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASD 265 (620)
T ss_pred HHHHccCC-------------------ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcC
Confidence 99885431 2347999999999999999999999999999999999999888777666654
Q ss_pred CC----CEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCC
Q 020452 173 RP----ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230 (326)
Q Consensus 173 ~~----~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~ 230 (326)
.+ ||+|+|||||.+++.+. ..+++++++++||||||+|++..|...+..++..+..
T Consensus 266 ~~~~~~DIlVaTPGRLVDHl~~~--k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~ 325 (620)
T KOG0350|consen 266 PPECRIDILVATPGRLVDHLNNT--KSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKT 325 (620)
T ss_pred CCccccceEEcCchHHHHhccCC--CCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCC
Confidence 33 89999999999999863 3478999999999999999998888877777776653
No 43
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.2e-28 Score=216.94 Aligned_cols=197 Identities=32% Similarity=0.534 Sum_probs=163.8
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 30 ~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~-g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
--...+|++|+|.|+++++++.|+|.+|+.+|+.++|.++.. .+|+|.++.+|+|||.+|.+.++.++..
T Consensus 86 lyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~--------- 156 (477)
T KOG0332|consen 86 LYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP--------- 156 (477)
T ss_pred ccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc---------
Confidence 334568999999999999999999999999999999998754 3699999999999999999999998732
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll 188 (326)
....|+++.|+|||+||.|+.+.+.+.++..+++......+....... .-..+|+|+||+.+.+++
T Consensus 157 -----------~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~---~i~eqIviGTPGtv~Dlm 222 (477)
T KOG0332|consen 157 -----------DVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGN---KLTEQIVIGTPGTVLDLM 222 (477)
T ss_pred -----------cccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCC---cchhheeeCCCccHHHHH
Confidence 244679999999999999999999999998888888777665221111 113589999999999999
Q ss_pred hcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
.. .+...+..++.+|+||||.|++ .||.++-..|...+| ...|+++||||+..
T Consensus 223 ~k--lk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP------------------------~~~QllLFSATf~e 276 (477)
T KOG0332|consen 223 LK--LKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP------------------------RNQQLLLFSATFVE 276 (477)
T ss_pred HH--HHhhChhhceEEEecchhhhhhcccccccchhhhhhcC------------------------CcceEEeeechhHH
Confidence 74 2457788999999999999995 578999999999998 67999999999974
Q ss_pred c-HHHHHHh
Q 020452 268 S-ADFRKKL 275 (326)
Q Consensus 268 ~-~~~~~~l 275 (326)
. ..|+..+
T Consensus 277 ~V~~Fa~ki 285 (477)
T KOG0332|consen 277 KVAAFALKI 285 (477)
T ss_pred HHHHHHHHh
Confidence 4 3444443
No 44
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.95 E-value=3.4e-27 Score=235.66 Aligned_cols=193 Identities=22% Similarity=0.260 Sum_probs=164.2
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 020452 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK 117 (326)
Q Consensus 38 ~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~ 117 (326)
.+.+++.+.+.++..|+..+.+-|+.++...+.+++|+++++|||||||+.+++.+++.+.+.
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----------------- 75 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----------------- 75 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-----------------
Confidence 344788899999999998898988888877766789999999999999999999999988543
Q ss_pred cCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCccccc
Q 020452 118 YAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 118 ~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
+.++||+||+++||.|.++.++ .+..+|++|...+|+...... .-.+++|+|+||+++-.++++.. ..
T Consensus 76 -----~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~---~~ 143 (766)
T COG1204 76 -----GGKVVYIVPLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRP---SW 143 (766)
T ss_pred -----CCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCc---ch
Confidence 4589999999999999999999 455679999999999876542 23468999999999888887764 36
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
+..+++||+||+|.+.+..++..++.++.+++..+ ...|++++|||+||..++++||..
T Consensus 144 ~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~---------------------~~~rivgLSATlpN~~evA~wL~a 202 (766)
T COG1204 144 IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN---------------------ELIRIVGLSATLPNAEEVADWLNA 202 (766)
T ss_pred hhcccEEEEeeeeecCCcccCceehhHHHHHHhhC---------------------cceEEEEEeeecCCHHHHHHHhCC
Confidence 78899999999999988878999999998887432 348999999999999999999986
Q ss_pred ccc
Q 020452 278 GSL 280 (326)
Q Consensus 278 ~~~ 280 (326)
...
T Consensus 203 ~~~ 205 (766)
T COG1204 203 KLV 205 (766)
T ss_pred ccc
Confidence 533
No 45
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=2.9e-27 Score=232.23 Aligned_cols=192 Identities=22% Similarity=0.338 Sum_probs=159.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
++|..++.+|..++|.+++++.|++||||||+|||-.|++.|++.+....+ .....++..++|||+|
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~-------------~~~i~k~~fKiVYIaP 172 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEE-------------QGDIAKDDFKIVYIAP 172 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhcc-------------ccccccCCceEEEEec
Confidence 678899999999999999999999999999999999999999998865221 1334456789999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC-cccccCCCeeEEeecchh
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-KHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~-~~~~~l~~l~~lViDEah 210 (326)
+++||.++++.|.+-+..+|++|..++|++...... -..++|||+||++ |+.+.+.. .....+..+++||+||+|
T Consensus 173 mKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEK-wDvvTRk~~~d~~l~~~V~LviIDEVH 248 (1230)
T KOG0952|consen 173 MKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEK-WDVVTRKSVGDSALFSLVRLVIIDEVH 248 (1230)
T ss_pred hHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccc-eeeeeeeeccchhhhhheeeEEeeeeh
Confidence 999999999999999888999999999998876554 2368999999999 67765432 223446789999999999
Q ss_pred HhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhcc
Q 020452 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 278 (326)
Q Consensus 211 ~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~ 278 (326)
.+- ..++..++.|+.++.+..+.+. ...++|++|||+||-+|.++||+.+
T Consensus 249 lLh-d~RGpvlEtiVaRtlr~vessq-----------------s~IRivgLSATlPN~eDvA~fL~vn 298 (1230)
T KOG0952|consen 249 LLH-DDRGPVLETIVARTLRLVESSQ-----------------SMIRIVGLSATLPNYEDVARFLRVN 298 (1230)
T ss_pred hhc-CcccchHHHHHHHHHHHHHhhh-----------------hheEEEEeeccCCCHHHHHHHhcCC
Confidence 765 4589999999988774333221 5689999999999999999999864
No 46
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.94 E-value=2.1e-26 Score=232.86 Aligned_cols=202 Identities=23% Similarity=0.354 Sum_probs=168.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
....+..++.+.|+..|++||.+|+..+ .+|+|++|.++||||||.+|++||++.+++...
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~-~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~------------------ 115 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLI-REGRNVVVTTGTGSGKTESFLLPILDHLLRDPS------------------ 115 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHH-HCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC------------------
Confidence 4455688889999999999999999998 699999999999999999999999999987642
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC--cEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH-HHhcCCccccc
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVAKGIN--VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE-LMSGGEKHLVE 197 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~-ll~~~~~~~~~ 197 (326)
-++|+|.||++|++++.+.++++....+ +.+...+|++..........+.++||++||.+|.. ++.+...+...
T Consensus 116 ---a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~ 192 (851)
T COG1205 116 ---ARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWL 192 (851)
T ss_pred ---ccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHH
Confidence 2899999999999999999999999887 88888999999888888888999999999999988 45555566777
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
++++++||+||+|..- ..|+.++..++++|...... .....|+|+.|||+.|+.+++..+..
T Consensus 193 ~~~Lk~lVvDElHtYr-Gv~GS~vA~llRRL~~~~~~-----------------~~~~~q~i~~SAT~~np~e~~~~l~~ 254 (851)
T COG1205 193 LRNLKYLVVDELHTYR-GVQGSEVALLLRRLLRRLRR-----------------YGSPLQIICTSATLANPGEFAEELFG 254 (851)
T ss_pred HhcCcEEEEecceecc-ccchhHHHHHHHHHHHHHhc-----------------cCCCceEEEEeccccChHHHHHHhcC
Confidence 8999999999999774 45677777666666522111 01468999999999999999988765
Q ss_pred ccccc
Q 020452 278 GSLKL 282 (326)
Q Consensus 278 ~~~~~ 282 (326)
..+..
T Consensus 255 ~~f~~ 259 (851)
T COG1205 255 RDFEV 259 (851)
T ss_pred Cccee
Confidence 44443
No 47
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=5.8e-26 Score=212.27 Aligned_cols=213 Identities=31% Similarity=0.476 Sum_probs=171.9
Q ss_pred ccCccccccccccccc----CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHH
Q 020452 23 LVSEAEISTEFDAWNE----LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLL 98 (326)
Q Consensus 23 ~~~~~~~~~~~~~f~~----l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~ 98 (326)
.+.+..+|.++.+|.+ ..+++.+++.+...||..|+|+|.+++|.++ .++|++.|+|||+|||++|.+|+++++.
T Consensus 121 ~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl-~~r~~lAcapTGsgKtlaf~~Pil~~L~ 199 (593)
T KOG0344|consen 121 NVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFL-EKRDVLACAPTGSGKTLAFNLPILQHLK 199 (593)
T ss_pred eccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhh-cccceEEeccCCCcchhhhhhHHHHHHH
Confidence 3455667899999998 5799999999999999999999999999995 8999999999999999999999999986
Q ss_pred HHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHH--cCCCcEEEEEEcCCCHHHH-HHHHhcCCC
Q 020452 99 EEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA--KGINVRVVPIVGGMSTEKQ-ERLLKARPE 175 (326)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~--~~~~~~v~~~~g~~~~~~~-~~~~~~~~~ 175 (326)
... ......+.+++|+.||++|+.|+++.+.++. ...+++...+......... .......++
T Consensus 200 ~~~---------------~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~d 264 (593)
T KOG0344|consen 200 DLS---------------QEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYD 264 (593)
T ss_pred Hhh---------------cccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHH
Confidence 543 1233567899999999999999999999998 5555555554444332222 222334579
Q ss_pred EEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC-CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCC
Q 020452 176 LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 254 (326)
Q Consensus 176 IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~-~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (326)
|+|+||-++..++..+ ....++..+.++|+||+|++++. .|..++..|+..+.+ +
T Consensus 265 ili~TP~ri~~~~~~~-~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s-----------------------~ 320 (593)
T KOG0344|consen 265 ILISTPMRIVGLLGLG-KLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS-----------------------P 320 (593)
T ss_pred HHhcCHHHHHHHhcCC-CccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC-----------------------c
Confidence 9999999999999765 22367899999999999999988 889999999988763 5
Q ss_pred CceEEEEeeeccCcHHHHHHhhc
Q 020452 255 KRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 255 ~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
...+-+||||++ ...-+|...
T Consensus 321 ~i~~a~FSat~~--~~VEE~~~~ 341 (593)
T KOG0344|consen 321 DIRVALFSATIS--VYVEEWAEL 341 (593)
T ss_pred chhhhhhhcccc--HHHHHHHHH
Confidence 688899999998 444566543
No 48
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.92 E-value=4.7e-24 Score=215.66 Aligned_cols=186 Identities=24% Similarity=0.320 Sum_probs=138.8
Q ss_pred ccccc--CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020452 34 DAWNE--LRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110 (326)
Q Consensus 34 ~~f~~--l~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~ 110 (326)
..|.. ++....+...++. +||..++|+|.++|+.++ .|+|+++++|||+|||++|++|++..
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL-~GrDVLVimPTGSGKSLcYQLPAL~~-------------- 499 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATM-SGYDVFVLMPTGGGKSLTYQLPALIC-------------- 499 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHHHHHHHHHHHc--------------
Confidence 35774 5556666666665 899999999999999995 89999999999999999999999853
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh------cCCCEEEeCcHHH
Q 020452 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK------ARPELVVGTPGRL 184 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~~IlV~Tp~~l 184 (326)
+..+|||+|+++|+.++...+.. .+++...+.++.....+...+. ..++||++||++|
T Consensus 500 ------------~GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL 563 (1195)
T PLN03137 500 ------------PGITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKV 563 (1195)
T ss_pred ------------CCcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHh
Confidence 23799999999999866655554 3789999999988776655443 4689999999998
Q ss_pred HH---HHhcCCcccccCCCeeEEeecchhHhhhCC--CHHHHHH---HHHhCCCCCCCCCCCcccccccccccccCCCCc
Q 020452 185 WE---LMSGGEKHLVELHTLSFFVLDEADRMIENG--HFRELQS---IIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256 (326)
Q Consensus 185 ~~---ll~~~~~~~~~l~~l~~lViDEah~l~~~~--~~~~i~~---il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (326)
.. ++... ........+.+|||||||++++|| |...+.. +...+ +.+
T Consensus 564 ~~~d~ll~~L-~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~f-------------------------p~v 617 (1195)
T PLN03137 564 AKSDSLLRHL-ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKF-------------------------PNI 617 (1195)
T ss_pred hcchHHHHHH-HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhC-------------------------CCC
Confidence 52 22211 111223458999999999999987 5555544 33333 357
Q ss_pred eEEEEeeeccCc--HHHHHHhh
Q 020452 257 QTLVFSATIALS--ADFRKKLK 276 (326)
Q Consensus 257 q~i~~SATl~~~--~~~~~~l~ 276 (326)
|++++|||++.. .++.+.|.
T Consensus 618 PilALTATAT~~V~eDI~~~L~ 639 (1195)
T PLN03137 618 PVLALTATATASVKEDVVQALG 639 (1195)
T ss_pred CeEEEEecCCHHHHHHHHHHcC
Confidence 899999999844 45666654
No 49
>PRK09401 reverse gyrase; Reviewed
Probab=99.92 E-value=1.2e-23 Score=218.84 Aligned_cols=190 Identities=23% Similarity=0.258 Sum_probs=133.9
Q ss_pred HHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEE
Q 020452 48 SIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126 (326)
Q Consensus 48 ~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (326)
.+++ .|+ .|+++|+.++|.++ .|+|++++||||+|||. |.++++..+.. .+.++
T Consensus 72 ~f~~~~G~-~pt~iQ~~~i~~il-~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----------------------~g~~a 126 (1176)
T PRK09401 72 FFKKKTGS-KPWSLQRTWAKRLL-LGESFAIIAPTGVGKTT-FGLVMSLYLAK----------------------KGKKS 126 (1176)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHH-CCCcEEEEcCCCCCHHH-HHHHHHHHHHh----------------------cCCeE
Confidence 3433 578 89999999999995 89999999999999995 55555443311 25689
Q ss_pred EEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCH-----HHHHHHHh-cCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 127 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST-----EKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 127 lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~-----~~~~~~~~-~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
+||+||++|+.|+++.++.++...++.+..++|+... ......+. ..++|+|+||++|.+.+.. ....+
T Consensus 127 lIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~-----l~~~~ 201 (1176)
T PRK09401 127 YIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE-----LPKKK 201 (1176)
T ss_pred EEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh-----ccccc
Confidence 9999999999999999999999888888888776542 22223333 4689999999999988752 44566
Q ss_pred eeEEeecchhHhhh-----------CCCH-HHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 201 LSFFVLDEADRMIE-----------NGHF-RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 201 l~~lViDEah~l~~-----------~~~~-~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
++++|+||||+|++ .||. +.+..++..++..+...+...........+........|++++|||++.
T Consensus 202 ~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~ 280 (1176)
T PRK09401 202 FDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRP 280 (1176)
T ss_pred cCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCc
Confidence 99999999999996 5674 6788888888731110000000000000000001126899999999974
No 50
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.92 E-value=4.5e-24 Score=212.41 Aligned_cols=169 Identities=20% Similarity=0.207 Sum_probs=129.4
Q ss_pred CCCCCChHHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE-EE
Q 020452 52 LGFKEPTPIQKACIPAAAHQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL-II 129 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~-dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-il 129 (326)
+||. |+|||.++++.++ .|+ ++++++|||||||.++.++++... . ....++.| ++
T Consensus 12 ~G~~-PtpiQ~~~i~~il-~G~~~v~~~apTGSGKTaa~aafll~~~-~--------------------~~~~~~rLv~~ 68 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFV-AGQPPESCSTPTGLGKTSIIAAWLLAVE-I--------------------GAKVPRRLVYV 68 (844)
T ss_pred hCCC-CCHHHHHHHHHHH-cCCCcceEecCCCCcccHHHHHhhcccc-c--------------------cccccceEEEe
Confidence 6996 9999999999996 777 678889999999997765544221 0 01233445 57
Q ss_pred eCcHHHHHHHHHHHHHHHcCC-----------------------CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH
Q 020452 130 TPTRELALQVTDHLKEVAKGI-----------------------NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 186 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~-----------------------~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ 186 (326)
+|||+|+.|+++.++.+.+.+ ++++..++||.....+...+..+++|||||++.
T Consensus 69 vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~--- 145 (844)
T TIGR02621 69 VNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDM--- 145 (844)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHH---
Confidence 799999999999999998754 488999999999999999999999999999644
Q ss_pred HHhcCCc-------------ccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCC
Q 020452 187 LMSGGEK-------------HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQR 253 (326)
Q Consensus 187 ll~~~~~-------------~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (326)
+.++.. ....++++++||+|||| ++++|...+..|++.+..... .
T Consensus 146 -i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~-------------------~ 203 (844)
T TIGR02621 146 -IGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD-------------------F 203 (844)
T ss_pred -HcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc-------------------c
Confidence 433221 01136889999999999 678999999999987521000 0
Q ss_pred CCceEEEEeeeccCc
Q 020452 254 KKRQTLVFSATIALS 268 (326)
Q Consensus 254 ~~~q~i~~SATl~~~ 268 (326)
.++|+++||||++..
T Consensus 204 rprQtLLFSAT~p~e 218 (844)
T TIGR02621 204 LPLRVVELTATSRTD 218 (844)
T ss_pred ccceEEEEecCCCcc
Confidence 237999999999853
No 51
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.4e-23 Score=202.55 Aligned_cols=170 Identities=22% Similarity=0.280 Sum_probs=127.9
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 50 YRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 50 ~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
+.+||..|+|+|.++|+.++ +|+|+++++|||+|||++|++|++.. +..+||+
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l-~g~dvlv~apTGsGKTl~y~lp~l~~--------------------------~~~~lVi 57 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVL-LGRDCFVVMPTGGGKSLCYQLPALCS--------------------------DGITLVI 57 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHhHHHHHHHHHc--------------------------CCcEEEE
Confidence 34899999999999999996 89999999999999999999998742 2269999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH----HhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEe
Q 020452 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL----LKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lV 205 (326)
+|+++|+.|+.+.+..+ ++.+..+.++......... ....++|+++||+++....... .......+++++|
T Consensus 58 ~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~-~~l~~~~~i~~iV 132 (470)
T TIGR00614 58 SPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLL-QTLEERKGITLIA 132 (470)
T ss_pred ecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHH-HHHHhcCCcCEEE
Confidence 99999999999888764 7888888888776543322 2345899999999975321000 0011467899999
Q ss_pred ecchhHhhhCC--CHHHHHH---HHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc--HHHHHHhh
Q 020452 206 LDEADRMIENG--HFRELQS---IIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS--ADFRKKLK 276 (326)
Q Consensus 206 iDEah~l~~~~--~~~~i~~---il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~--~~~~~~l~ 276 (326)
|||||++.+++ |...+.. +...+ +..|++++|||++.. .++.+++.
T Consensus 133 iDEaH~i~~~g~~fr~~~~~l~~l~~~~-------------------------~~~~~l~lTAT~~~~~~~di~~~l~ 185 (470)
T TIGR00614 133 VDEAHCISQWGHDFRPDYKALGSLKQKF-------------------------PNVPIMALTATASPSVREDILRQLN 185 (470)
T ss_pred EeCCcccCccccccHHHHHHHHHHHHHc-------------------------CCCceEEEecCCCHHHHHHHHHHcC
Confidence 99999999876 4444433 34444 357899999999854 45556553
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.91 E-value=1.4e-23 Score=219.65 Aligned_cols=169 Identities=24% Similarity=0.315 Sum_probs=130.5
Q ss_pred EEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc--------
Q 020452 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK-------- 148 (326)
Q Consensus 77 v~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~-------- 148 (326)
|+||||||||++|.+|++..+....... ........+.++|||+|+++|+.|+++.++..+.
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~----------~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~ 70 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGED----------TREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRR 70 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhccccc----------ccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 5799999999999999999987542100 0000112357999999999999999999875221
Q ss_pred ----CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHH
Q 020452 149 ----GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224 (326)
Q Consensus 149 ----~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~i 224 (326)
..++++...+|+++..++.+.+.+.+||||+||++|..++.+. ....++++++|||||+|.|.+..++..+...
T Consensus 71 ~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk--~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~ 148 (1490)
T PRK09751 71 RGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR--ARETLRGVETVIIDEVHAVAGSKRGAHLALS 148 (1490)
T ss_pred cccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh--hhhhhccCCEEEEecHHHhcccccccHHHHH
Confidence 2478999999999998887777788999999999999888643 2346899999999999999977666655555
Q ss_pred HHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 225 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 225 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
+++|.... ..+.|+|++|||+++.+++.+||..
T Consensus 149 LeRL~~l~--------------------~~~~QrIgLSATI~n~eevA~~L~g 181 (1490)
T PRK09751 149 LERLDALL--------------------HTSAQRIGLSATVRSASDVAAFLGG 181 (1490)
T ss_pred HHHHHHhC--------------------CCCCeEEEEEeeCCCHHHHHHHhcC
Confidence 54443110 0568999999999999999999963
No 53
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.90 E-value=1.4e-23 Score=195.58 Aligned_cols=197 Identities=25% Similarity=0.305 Sum_probs=164.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
..++|++++.+.+.|+..|++.+.|+|..++..-+..|.|.+++++|+||||++.-++-+..++..
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-------------- 260 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-------------- 260 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC--------------
Confidence 467899999999999999999999999999988777999999999999999999999888887653
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH----HHhcCCCEEEeCcHHHHHHHhc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER----LLKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~----~~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
+.+.||++|.-+||+|-++.|+.-..++++++..-+|..-...... .....+||||||.+.+-.+++.
T Consensus 261 --------g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt 332 (830)
T COG1202 261 --------GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT 332 (830)
T ss_pred --------CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc
Confidence 4589999999999999999999998999999988887654433321 1223679999999999888877
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHH
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 270 (326)
+ ..+.++..+||||+|.+-+..++.-+.-++.+|+... +..|+|.+|||+.|+.+
T Consensus 333 g----~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~---------------------~~AQ~i~LSATVgNp~e 387 (830)
T COG1202 333 G----KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF---------------------PGAQFIYLSATVGNPEE 387 (830)
T ss_pred C----CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC---------------------CCCeEEEEEeecCChHH
Confidence 6 6688999999999998887666665555555554221 56899999999999999
Q ss_pred HHHHhhcc
Q 020452 271 FRKKLKHG 278 (326)
Q Consensus 271 ~~~~l~~~ 278 (326)
+++.|...
T Consensus 388 lA~~l~a~ 395 (830)
T COG1202 388 LAKKLGAK 395 (830)
T ss_pred HHHHhCCe
Confidence 99998753
No 54
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.89 E-value=1.2e-22 Score=201.44 Aligned_cols=170 Identities=22% Similarity=0.366 Sum_probs=131.0
Q ss_pred HHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEE
Q 020452 48 SIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126 (326)
Q Consensus 48 ~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (326)
.|++ +||..++|+|.++|+.++ +|+|+++++|||+|||++|++|++.. +..+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il-~g~dvlv~~PTG~GKTl~y~lpal~~--------------------------~g~~ 56 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVL-DGRDVLVVMPTGGGKSLCYQVPALLL--------------------------KGLT 56 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHhHHHHHHHHHc--------------------------CCcE
Confidence 4544 899999999999999996 89999999999999999999998742 1268
Q ss_pred EEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCCCee
Q 020452 127 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLS 202 (326)
Q Consensus 127 lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~ 202 (326)
+|++|+++|+.|+.+.++.+ ++.+..+.++.........+ ....+|+++||+++..... .......+++
T Consensus 57 lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~---~~~l~~~~l~ 129 (591)
T TIGR01389 57 VVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYF---LNMLQRIPIA 129 (591)
T ss_pred EEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHH---HHHHhcCCCC
Confidence 99999999999999988875 78888899888776554332 3468999999999853221 1124456899
Q ss_pred EEeecchhHhhhCC--CHHHHH---HHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc--HHHHHHh
Q 020452 203 FFVLDEADRMIENG--HFRELQ---SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS--ADFRKKL 275 (326)
Q Consensus 203 ~lViDEah~l~~~~--~~~~i~---~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~--~~~~~~l 275 (326)
++||||||++.++| |...+. .+...++ ..+++++|||.+.. .++.++|
T Consensus 130 ~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~-------------------------~~~vi~lTAT~~~~~~~~i~~~l 184 (591)
T TIGR01389 130 LVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP-------------------------QVPRIALTATADAETRQDIRELL 184 (591)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHhCC-------------------------CCCEEEEEeCCCHHHHHHHHHHc
Confidence 99999999999876 444443 4444443 35699999999855 4566776
Q ss_pred h
Q 020452 276 K 276 (326)
Q Consensus 276 ~ 276 (326)
.
T Consensus 185 ~ 185 (591)
T TIGR01389 185 R 185 (591)
T ss_pred C
Confidence 4
No 55
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.89 E-value=2.4e-22 Score=199.17 Aligned_cols=176 Identities=21% Similarity=0.303 Sum_probs=132.0
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 020452 40 RLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 118 (326)
Q Consensus 40 ~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~ 118 (326)
++.+...+.|++ +||..|+|+|+++|+.++ +|+|+++.+|||+|||++|++|++..
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il-~g~dvlv~apTGsGKTl~y~lpal~~---------------------- 64 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVL-SGRDCLVVMPTGGGKSLCYQIPALVL---------------------- 64 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHc----------------------
Confidence 344455555655 899999999999999985 89999999999999999999998853
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHH--HHhcCC
Q 020452 119 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWE--LMSGGE 192 (326)
Q Consensus 119 ~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~--ll~~~~ 192 (326)
...+||++|+++|+.|+.+.+..+ ++.+..+.++.......... ....+++++||+++.. ++.
T Consensus 65 ----~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~--- 133 (607)
T PRK11057 65 ----DGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE--- 133 (607)
T ss_pred ----CCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH---
Confidence 126999999999999999888775 77888888877765543322 2357899999999863 221
Q ss_pred cccccCCCeeEEeecchhHhhhCC--CHHH---HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 193 KHLVELHTLSFFVLDEADRMIENG--HFRE---LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~--~~~~---i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
.....+++++||||||++.+++ |... +..+...+ +..|++++|||.+.
T Consensus 134 --~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-------------------------p~~~~v~lTAT~~~ 186 (607)
T PRK11057 134 --HLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-------------------------PTLPFMALTATADD 186 (607)
T ss_pred --HHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC-------------------------CCCcEEEEecCCCh
Confidence 1234578999999999999876 4433 33444444 35789999999986
Q ss_pred cH--HHHHHhh
Q 020452 268 SA--DFRKKLK 276 (326)
Q Consensus 268 ~~--~~~~~l~ 276 (326)
.. ++.+.+.
T Consensus 187 ~~~~di~~~l~ 197 (607)
T PRK11057 187 TTRQDIVRLLG 197 (607)
T ss_pred hHHHHHHHHhC
Confidence 53 4555543
No 56
>PRK14701 reverse gyrase; Provisional
Probab=99.89 E-value=3e-22 Score=212.84 Aligned_cols=151 Identities=21% Similarity=0.249 Sum_probs=118.6
Q ss_pred HHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCC
Q 020452 43 PLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK 121 (326)
Q Consensus 43 ~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (326)
..+.+.+++ +|| .|+++|+.+++.++ +|+|++++||||+|||++++++.+... .
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il-~G~d~li~APTGsGKTl~~~~~al~~~-----------------------~ 120 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRIL-RGKSFSIVAPTGMGKSTFGAFIALFLA-----------------------L 120 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHH-cCCCEEEEEcCCCCHHHHHHHHHHHHH-----------------------h
Confidence 344555665 899 69999999999996 899999999999999996665554332 1
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCC--CcEEEEEEcCCCHHHHHHH---Hhc-CCCEEEeCcHHHHHHHhcCCccc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGI--NVRVVPIVGGMSTEKQERL---LKA-RPELVVGTPGRLWELMSGGEKHL 195 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~--~~~v~~~~g~~~~~~~~~~---~~~-~~~IlV~Tp~~l~~ll~~~~~~~ 195 (326)
.+.++||++||++|+.|+++.++.++... ++++..++|+.+...+... +.. .++|+|+||++|.+.+...
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l---- 196 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM---- 196 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----
Confidence 24589999999999999999999998765 4677888999887665432 333 5899999999998876531
Q ss_pred ccCCCeeEEeecchhHhhh-----------CCCHHHHHH
Q 020452 196 VELHTLSFFVLDEADRMIE-----------NGHFRELQS 223 (326)
Q Consensus 196 ~~l~~l~~lViDEah~l~~-----------~~~~~~i~~ 223 (326)
. ..+++++|+||||+|++ .||.+++..
T Consensus 197 ~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 197 K-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred h-hCCCCEEEEECceeccccccccchhhhcCCChHHHHH
Confidence 2 26799999999999986 477776653
No 57
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.89 E-value=3.2e-22 Score=203.87 Aligned_cols=166 Identities=21% Similarity=0.236 Sum_probs=129.7
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHHHhc-----CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 40 RLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQ-----GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 40 ~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~-----g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
+.+..+...+.+ ++| .||+.|.++|+.++.. ++|.+++||||+|||.+|+.+++..+..
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-------------- 499 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-------------- 499 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------------
Confidence 345566666655 788 6999999999999632 3799999999999999999999887632
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH---h-cCCCEEEeCcHHHHHHHh
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---K-ARPELVVGTPGRLWELMS 189 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~IlV~Tp~~l~~ll~ 189 (326)
+.+++|++||++||.|+++.+++++...++++..++|+....+....+ . ..++||||||.. +.
T Consensus 500 ---------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~ 566 (926)
T TIGR00580 500 ---------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQ 566 (926)
T ss_pred ---------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hh
Confidence 358999999999999999999999988899999999887755443332 2 368999999943 32
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
. ...+++++++|+||+|++. ......+..++ ..+|+++||||+.
T Consensus 567 ~----~v~f~~L~llVIDEahrfg-----v~~~~~L~~~~------------------------~~~~vL~~SATpi 610 (926)
T TIGR00580 567 K----DVKFKDLGLLIIDEEQRFG-----VKQKEKLKELR------------------------TSVDVLTLSATPI 610 (926)
T ss_pred C----CCCcccCCEEEeecccccc-----hhHHHHHHhcC------------------------CCCCEEEEecCCC
Confidence 2 2568899999999999853 23344455555 5689999999964
No 58
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.89 E-value=3.7e-22 Score=208.12 Aligned_cols=156 Identities=22% Similarity=0.268 Sum_probs=118.0
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 020452 43 PLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122 (326)
Q Consensus 43 ~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (326)
.++.+.+.+.....|+++|+.+++.++ .|+|++++||||+|||. |.+|+...+.. .
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il-~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----------------------~ 120 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVL-RGDSFAIIAPTGVGKTT-FGLAMSLFLAK----------------------K 120 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHh-CCCeEEEECCCCCCHHH-HHHHHHHHHHh----------------------c
Confidence 334455555344489999999999985 89999999999999996 66666654421 1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEE---EEEcCCCHHHHHH---HHh-cCCCEEEeCcHHHHHHHhcCCccc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVV---PIVGGMSTEKQER---LLK-ARPELVVGTPGRLWELMSGGEKHL 195 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~---~~~g~~~~~~~~~---~~~-~~~~IlV~Tp~~l~~ll~~~~~~~ 195 (326)
+++++|++||++||.|+++.++.++...++.+. .++|+.+...+.. .+. .+++|+|+||++|.+.+...
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l---- 196 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL---- 196 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh----
Confidence 468999999999999999999999987776543 4678887765433 233 35999999999998877532
Q ss_pred ccCCCeeEEeecchhHhhh-----------CCCHH-HHHHHHHhC
Q 020452 196 VELHTLSFFVLDEADRMIE-----------NGHFR-ELQSIIDML 228 (326)
Q Consensus 196 ~~l~~l~~lViDEah~l~~-----------~~~~~-~i~~il~~l 228 (326)
. . +++++|+||||+|++ .||.+ .+..++..+
T Consensus 197 ~-~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~ 239 (1171)
T TIGR01054 197 G-P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLI 239 (1171)
T ss_pred c-C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHh
Confidence 1 1 799999999999997 56755 356655443
No 59
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.89 E-value=3.9e-22 Score=199.86 Aligned_cols=135 Identities=25% Similarity=0.396 Sum_probs=111.9
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcC
Q 020452 46 MKSIYRLGFKEPTPIQKACIPAAAHQG------KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 119 (326)
Q Consensus 46 ~~~l~~~g~~~p~~~Q~~~i~~~l~~g------~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (326)
......++| .||++|+++++.+. ++ .+.+++||||||||.+|++|++..+.
T Consensus 252 ~~~~~~l~f-~lt~~Q~~ai~~I~-~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--------------------- 308 (681)
T PRK10917 252 KKFLASLPF-ELTGAQKRVVAEIL-ADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--------------------- 308 (681)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHH-HhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---------------------
Confidence 334456888 79999999999985 44 48999999999999999999988762
Q ss_pred CCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH---HHh-cCCCEEEeCcHHHHHHHhcCCccc
Q 020452 120 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER---LLK-ARPELVVGTPGRLWELMSGGEKHL 195 (326)
Q Consensus 120 ~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~---~~~-~~~~IlV~Tp~~l~~ll~~~~~~~ 195 (326)
.+.+++|++||++||.|+++.+++++...++++..++|+........ .+. ..++|+||||+.+.+ .
T Consensus 309 --~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~--------~ 378 (681)
T PRK10917 309 --AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD--------D 378 (681)
T ss_pred --cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc--------c
Confidence 25589999999999999999999999988999999999998654433 233 359999999987632 1
Q ss_pred ccCCCeeEEeecchhHhh
Q 020452 196 VELHTLSFFVLDEADRMI 213 (326)
Q Consensus 196 ~~l~~l~~lViDEah~l~ 213 (326)
..+++++++|+||+|++.
T Consensus 379 v~~~~l~lvVIDE~Hrfg 396 (681)
T PRK10917 379 VEFHNLGLVIIDEQHRFG 396 (681)
T ss_pred chhcccceEEEechhhhh
Confidence 457889999999999874
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.88 E-value=1.1e-21 Score=195.15 Aligned_cols=139 Identities=27% Similarity=0.390 Sum_probs=114.1
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcC-----CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 020452 43 PLLMKSIYRLGFKEPTPIQKACIPAAAHQG-----KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK 117 (326)
Q Consensus 43 ~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g-----~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~ 117 (326)
..+.+.+..++| .||+.|+++|+.++..- .+.+++||||||||.+|++|++..+.
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------------------- 282 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------------------- 282 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-------------------
Confidence 445566678999 89999999999986321 36899999999999999999998762
Q ss_pred cCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCc
Q 020452 118 YAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 118 ~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
.+.+++|++||++||.|+++.+++++...++++..++|+.........+ ...++|+||||+.+.+.
T Consensus 283 ----~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~------ 352 (630)
T TIGR00643 283 ----AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK------ 352 (630)
T ss_pred ----cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc------
Confidence 1458999999999999999999999998899999999998876543322 23579999999886421
Q ss_pred ccccCCCeeEEeecchhHhh
Q 020452 194 HLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 194 ~~~~l~~l~~lViDEah~l~ 213 (326)
..+++++++|+||+|++.
T Consensus 353 --~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 353 --VEFKRLALVIIDEQHRFG 370 (630)
T ss_pred --ccccccceEEEechhhcc
Confidence 457889999999999864
No 61
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=2.4e-22 Score=201.98 Aligned_cols=175 Identities=21% Similarity=0.273 Sum_probs=148.9
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 020452 46 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 125 (326)
Q Consensus 46 ~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
.......|| .|.++|++++..+ ..|.+++++||||+|||++...++...+.. +-+
T Consensus 110 ~~~~~~~~F-~LD~fQ~~a~~~L-er~esVlV~ApTssGKTvVaeyAi~~al~~-----------------------~qr 164 (1041)
T COG4581 110 APPAREYPF-ELDPFQQEAIAIL-ERGESVLVCAPTSSGKTVVAEYAIALALRD-----------------------GQR 164 (1041)
T ss_pred CcHHHhCCC-CcCHHHHHHHHHH-hCCCcEEEEccCCCCcchHHHHHHHHHHHc-----------------------CCc
Confidence 334456788 8999999999887 799999999999999999988877766533 337
Q ss_pred EEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEe
Q 020452 126 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205 (326)
Q Consensus 126 ~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lV 205 (326)
++|.+|.++|.+|.++.+...+....-.+++++|+... +.++.++|.|.+.|..++..+. ..+..+.+||
T Consensus 165 viYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~---~~~~~i~~Vi 234 (1041)
T COG4581 165 VIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGS---ESLRDIEWVV 234 (1041)
T ss_pred eEeccchhhhhhhHHHHHHHHhhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCc---ccccccceEE
Confidence 99999999999999999988765432235778888765 3457899999999999997764 6788999999
Q ss_pred ecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhccc
Q 020452 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279 (326)
Q Consensus 206 iDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~ 279 (326)
|||+|.|.+...+..++.++-.+| ...|+|++|||+||+.+|..|+.+..
T Consensus 235 FDEvHyi~D~eRG~VWEE~Ii~lP------------------------~~v~~v~LSATv~N~~EF~~Wi~~~~ 284 (1041)
T COG4581 235 FDEVHYIGDRERGVVWEEVIILLP------------------------DHVRFVFLSATVPNAEEFAEWIQRVH 284 (1041)
T ss_pred EEeeeeccccccchhHHHHHHhcC------------------------CCCcEEEEeCCCCCHHHHHHHHHhcc
Confidence 999999999999999999999999 78899999999999999999998543
No 62
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.87 E-value=2.6e-21 Score=201.19 Aligned_cols=160 Identities=23% Similarity=0.248 Sum_probs=126.8
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 020452 45 LMKSIYRLGFKEPTPIQKACIPAAAHQG------KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 118 (326)
Q Consensus 45 i~~~l~~~g~~~p~~~Q~~~i~~~l~~g------~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~ 118 (326)
..+....++| .||+.|.++|+.++ ++ +|++++++||+|||.+|+.+++..+.
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il-~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-------------------- 647 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVL-SDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-------------------- 647 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHH-HHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------------------
Confidence 3444566888 79999999999986 44 79999999999999999888766542
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcc
Q 020452 119 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 119 ~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
.+.+++|++||++||.|+++.+++.+...++++..++|+.+..++...+. ..++|+||||+.+ ..
T Consensus 648 ---~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~---- 716 (1147)
T PRK10689 648 ---NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS---- 716 (1147)
T ss_pred ---cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC----
Confidence 24589999999999999999999988877889989999888776655443 4689999999643 22
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
...++++++||+||+|++. +. . ...+..++ .++|+++||||+.
T Consensus 717 ~v~~~~L~lLVIDEahrfG---~~-~-~e~lk~l~------------------------~~~qvLl~SATpi 759 (1147)
T PRK10689 717 DVKWKDLGLLIVDEEHRFG---VR-H-KERIKAMR------------------------ADVDILTLTATPI 759 (1147)
T ss_pred CCCHhhCCEEEEechhhcc---hh-H-HHHHHhcC------------------------CCCcEEEEcCCCC
Confidence 1457889999999999973 22 2 23445555 6789999999975
No 63
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=1.9e-21 Score=193.31 Aligned_cols=151 Identities=19% Similarity=0.293 Sum_probs=128.3
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 37 NELRLHPLLMKSIY-----RLGFKEP---TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 37 ~~l~l~~~i~~~l~-----~~g~~~p---~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
+.|.+...+.+.+. .+||..| +|+|.++++.++ .++++++.++||+|||++|++|++..++..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~-l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-------- 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIA-MHKGFITEMQTGEGKTLTAVMPLYLNALTG-------- 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhh-cCCCeEEEeCCCCChHHHHHHHHHHHHhhc--------
Confidence 56678888888877 5899998 999999999985 889999999999999999999999877532
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WEL 187 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~l 187 (326)
..++||+||++||.|.++.+..+.+.+++++++++||.+...+.... ++||+||||++| .++
T Consensus 136 ---------------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDy 198 (970)
T PRK12899 136 ---------------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDY 198 (970)
T ss_pred ---------------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHH
Confidence 14899999999999999999999999999999999999988776554 599999999999 999
Q ss_pred HhcCCcccc----cCCCeeEEeecchhHhh
Q 020452 188 MSGGEKHLV----ELHTLSFFVLDEADRMI 213 (326)
Q Consensus 188 l~~~~~~~~----~l~~l~~lViDEah~l~ 213 (326)
++.+..... ....+.++|+||||.|+
T Consensus 199 Lrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 199 LRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred hhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 976531111 12356899999999987
No 64
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.85 E-value=5.1e-20 Score=156.16 Aligned_cols=169 Identities=39% Similarity=0.604 Sum_probs=135.4
Q ss_pred HCCCCCChHHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 51 RLGFKEPTPIQKACIPAAAHQG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g-~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
..++..|+++|.+++..++ +. +++++.++||+|||.+++.+++..+... ...+++|+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~-~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---------------------~~~~~l~~ 60 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALL-SGLRDVILAAPTGSGKTLAALLPALEALKRG---------------------KGKRVLVL 60 (201)
T ss_pred ccCCCCCCHHHHHHHHHHH-cCCCcEEEECCCCCchhHHHHHHHHHHhccc---------------------CCCcEEEE
Confidence 4567899999999999985 66 8999999999999999999888876432 12479999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCC-CEEEeCcHHHHHHHhcCCcccccCCCeeEEeecc
Q 020452 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARP-ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~-~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDE 208 (326)
+|++.++.|+...+..++...........++............+. +|+++|++.+.+.+.... .....++++|+||
T Consensus 61 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE 137 (201)
T smart00487 61 VPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDE 137 (201)
T ss_pred eCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEEC
Confidence 999999999999999987655434444555555445555555555 999999999999887643 4567789999999
Q ss_pred hhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 209 ah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
+|.+....+...+..++..++ ...+++++|||.++.
T Consensus 138 ~h~~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~saT~~~~ 173 (201)
T smart00487 138 AHRLLDGGFGDQLEKLLKLLP------------------------KNVQLLLLSATPPEE 173 (201)
T ss_pred HHHHhcCCcHHHHHHHHHhCC------------------------ccceEEEEecCCchh
Confidence 999986578888888888775 678999999999844
No 65
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.84 E-value=4.1e-21 Score=173.87 Aligned_cols=124 Identities=34% Similarity=0.489 Sum_probs=107.2
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCC---CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGI---NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~---~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
..|+++|+-|+|+|++|.+..++++-.+. .++..++.||.....+...+.++.||+|+||+|+.++++.+. ..+
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~---~~l 361 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGL---VTL 361 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccc---eee
Confidence 35799999999999999999888876554 356668899998889999999999999999999999998764 778
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
..++++|+||+|.++..++-+.|.++..++|...+.. ...|.+++|||+.
T Consensus 362 t~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg------------------~rlq~~vCsatlh 411 (725)
T KOG0349|consen 362 THCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDG------------------FRLQSPVCSATLH 411 (725)
T ss_pred eeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCC------------------cccccceeeeEEe
Confidence 8999999999999999999999999999998543322 4689999999996
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.84 E-value=3.4e-20 Score=180.19 Aligned_cols=151 Identities=20% Similarity=0.171 Sum_probs=113.5
Q ss_pred CCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 020452 54 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133 (326)
Q Consensus 54 ~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 133 (326)
...|+++|.++++.++ .+++.++++|||+|||+++...+ ..+... ...++||++||+
T Consensus 112 ~~~~r~~Q~~av~~~l-~~~~~il~apTGsGKT~i~~~l~-~~~~~~---------------------~~~~vLilvpt~ 168 (501)
T PHA02558 112 KIEPHWYQYDAVYEGL-KNNRRLLNLPTSAGKSLIQYLLS-RYYLEN---------------------YEGKVLIIVPTT 168 (501)
T ss_pred cCCCCHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHH-HHHHhc---------------------CCCeEEEEECcH
Confidence 3489999999999986 67889999999999999765422 222111 133899999999
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhh
Q 020452 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 134 ~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~ 213 (326)
+|+.|+.+.++++.......+..+.+|.... .+.+|+|+||+++.+... ..+++++++|+||||++.
T Consensus 169 eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~------~~~~~~~~iIvDEaH~~~ 235 (501)
T PHA02558 169 SLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK------EWFDQFGMVIVDECHLFT 235 (501)
T ss_pred HHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh------hhccccCEEEEEchhccc
Confidence 9999999999998654444555566664432 357899999999865432 346789999999999997
Q ss_pred hCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 214 ~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.. .+..++..++ +.+|+++||||+...
T Consensus 236 ~~----~~~~il~~~~------------------------~~~~~lGLTATp~~~ 262 (501)
T PHA02558 236 GK----SLTSIITKLD------------------------NCKFKFGLTGSLRDG 262 (501)
T ss_pred ch----hHHHHHHhhh------------------------ccceEEEEeccCCCc
Confidence 53 4556666665 457899999999754
No 67
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.84 E-value=4.2e-21 Score=187.40 Aligned_cols=170 Identities=21% Similarity=0.271 Sum_probs=144.7
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 50 YRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 50 ~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
...+| +|..+|++||.++ ..|.++++.|+|.+|||.++-.+|...- .++.|++|.
T Consensus 292 ~~~pF-elD~FQk~Ai~~l-erg~SVFVAAHTSAGKTvVAEYAialaq-----------------------~h~TR~iYT 346 (1248)
T KOG0947|consen 292 LIYPF-ELDTFQKEAIYHL-ERGDSVFVAAHTSAGKTVVAEYAIALAQ-----------------------KHMTRTIYT 346 (1248)
T ss_pred hhCCC-CccHHHHHHHHHH-HcCCeEEEEecCCCCcchHHHHHHHHHH-----------------------hhccceEec
Confidence 44677 8999999999888 6899999999999999999766554321 235699999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecch
Q 020452 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEa 209 (326)
+|-++|.+|-++.|+.-+... ++++|+...+. .+.++|.|.+.|..++.++. .-..++.+|||||+
T Consensus 347 SPIKALSNQKfRDFk~tF~Dv----gLlTGDvqinP-------eAsCLIMTTEILRsMLYrga---dliRDvE~VIFDEV 412 (1248)
T KOG0947|consen 347 SPIKALSNQKFRDFKETFGDV----GLLTGDVQINP-------EASCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEV 412 (1248)
T ss_pred chhhhhccchHHHHHHhcccc----ceeecceeeCC-------CcceEeehHHHHHHHHhccc---chhhccceEEEeee
Confidence 999999999999999876643 37888876544 37899999999999998764 55678999999999
Q ss_pred hHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhcccccc
Q 020452 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKL 282 (326)
Q Consensus 210 h~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~ 282 (326)
|.+.|..++-.++.++-++| ..+++|++|||+||..+|++|.++..-+.
T Consensus 413 HYiND~eRGvVWEEViIMlP------------------------~HV~~IlLSATVPN~~EFA~WIGRtK~K~ 461 (1248)
T KOG0947|consen 413 HYINDVERGVVWEEVIIMLP------------------------RHVNFILLSATVPNTLEFADWIGRTKQKT 461 (1248)
T ss_pred eecccccccccceeeeeecc------------------------ccceEEEEeccCCChHHHHHHhhhccCce
Confidence 99999999999999999999 78999999999999999999998754443
No 68
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.83 E-value=6.4e-19 Score=163.12 Aligned_cols=169 Identities=23% Similarity=0.274 Sum_probs=136.2
Q ss_pred CCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 020452 54 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133 (326)
Q Consensus 54 ~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 133 (326)
.-+++.+|......++ .+|++++.|||-|||+.+++-+..++... ++ ++|+++||+
T Consensus 13 ~ie~R~YQ~~i~a~al--~~NtLvvlPTGLGKT~IA~~V~~~~l~~~---------------------~~-kvlfLAPTK 68 (542)
T COG1111 13 TIEPRLYQLNIAAKAL--FKNTLVVLPTGLGKTFIAAMVIANRLRWF---------------------GG-KVLFLAPTK 68 (542)
T ss_pred cccHHHHHHHHHHHHh--hcCeEEEecCCccHHHHHHHHHHHHHHhc---------------------CC-eEEEecCCc
Confidence 3478999999988875 56999999999999999988888776432 23 899999999
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhh
Q 020452 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 134 ~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~ 213 (326)
-|+.|.++.+.+.+.-..-.++.++|..........|.. ..|+|+||+.+..=|..+. .++.++.++||||||+-.
T Consensus 69 PLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Gr---id~~dv~~lifDEAHRAv 144 (542)
T COG1111 69 PLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGR---IDLDDVSLLIFDEAHRAV 144 (542)
T ss_pred hHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCc---cChHHceEEEechhhhcc
Confidence 999999999999987666788999999999888777764 6899999999987776553 889999999999999987
Q ss_pred hCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHH
Q 020452 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274 (326)
Q Consensus 214 ~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 274 (326)
....+..+..-...-. .++.++++|||.....+-...
T Consensus 145 GnyAYv~Va~~y~~~~------------------------k~~~ilgLTASPGs~~ekI~e 181 (542)
T COG1111 145 GNYAYVFVAKEYLRSA------------------------KNPLILGLTASPGSDLEKIQE 181 (542)
T ss_pred CcchHHHHHHHHHHhc------------------------cCceEEEEecCCCCCHHHHHH
Confidence 5544555544333322 568999999999877443333
No 69
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.82 E-value=6.1e-20 Score=183.34 Aligned_cols=254 Identities=17% Similarity=0.234 Sum_probs=180.0
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 020452 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA 115 (326)
Q Consensus 36 f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~ 115 (326)
|.-..++.+-..++. |...++++|..+.++++....++++|||||+|||..+++-+++.+......
T Consensus 291 ~~iselP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~------------ 356 (1674)
T KOG0951|consen 291 VKISELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRE------------ 356 (1674)
T ss_pred EeecCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccc------------
Confidence 444455555565554 455699999999999987778999999999999999999999988544321
Q ss_pred hhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCccc
Q 020452 116 EKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195 (326)
Q Consensus 116 ~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~ 195 (326)
.........+++|++|.++|++.+...+.+.+..+|++|.-++|+....... ....+|+||||++ ++.+.+.....
T Consensus 357 dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK-~DiITRk~gdr 432 (1674)
T KOG0951|consen 357 DGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEK-WDIITRKSGDR 432 (1674)
T ss_pred ccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccch-hhhhhcccCch
Confidence 0112344569999999999999999999999999999999999997754442 2357899999999 67775543222
Q ss_pred ccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHh
Q 020452 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275 (326)
Q Consensus 196 ~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l 275 (326)
.-.+-++++|+||+|.+.| .++..++.|..+....... ...+++++++|||+||.+|.+.+|
T Consensus 433 aY~qlvrLlIIDEIHLLhD-dRGpvLESIVaRt~r~ses-----------------~~e~~RlVGLSATLPNy~DV~~Fl 494 (1674)
T KOG0951|consen 433 AYEQLVRLLIIDEIHLLHD-DRGPVLESIVARTFRRSES-----------------TEEGSRLVGLSATLPNYEDVASFL 494 (1674)
T ss_pred hHHHHHHHHhhhhhhhccc-ccchHHHHHHHHHHHHhhh-----------------cccCceeeeecccCCchhhhHHHh
Confidence 3334578999999997654 5788888888766532211 225789999999999999999987
Q ss_pred hccc---------cccccccC---c--------------cccHHHHHHHhCCccCcEEEe-cCChHHHHhhhhhhcc
Q 020452 276 KHGS---------LKLKQSVN---G--------------LNSIETLSERAGMRANVAIVD-LTNVSVLANKLEESFI 325 (326)
Q Consensus 276 ~~~~---------~~~~~~~~---~--------------~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 325 (326)
.... ++..+..+ + ....+++.+.++-.+-..++- -.....++..||...+
T Consensus 495 ~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~l 571 (1674)
T KOG0951|consen 495 RVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKAL 571 (1674)
T ss_pred ccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHh
Confidence 6432 22222211 1 122355666666533333333 3346788888886654
No 70
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.81 E-value=1.9e-20 Score=179.01 Aligned_cols=164 Identities=23% Similarity=0.319 Sum_probs=142.4
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
.+.| .+.|+|..+|..+ .++.++++.|.|.+|||.++-.+|...+..++ |+||..
T Consensus 125 ~YPF-~LDpFQ~~aI~Ci-dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ-----------------------RVIYTS 179 (1041)
T KOG0948|consen 125 TYPF-TLDPFQSTAIKCI-DRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ-----------------------RVIYTS 179 (1041)
T ss_pred CCCc-ccCchHhhhhhhh-cCCceEEEEeecCCCcchHHHHHHHHHHHhcC-----------------------eEEeeC
Confidence 3455 7899999999888 79999999999999999999888877764432 899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchh
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah 210 (326)
|-++|.+|-|+.+..-++ .|++++|+...+. .+..+|.|.+.|..++.++. .-+..+.|+|+||+|
T Consensus 180 PIKALSNQKYREl~~EF~----DVGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGS---EvmrEVaWVIFDEIH 245 (1041)
T KOG0948|consen 180 PIKALSNQKYRELLEEFK----DVGLMTGDVTINP-------DASCLVMTTEILRSMLYRGS---EVMREVAWVIFDEIH 245 (1041)
T ss_pred hhhhhcchhHHHHHHHhc----ccceeecceeeCC-------CCceeeeHHHHHHHHHhccc---hHhheeeeEEeeeeh
Confidence 999999999999887765 5667888877633 47899999999999998775 667889999999999
Q ss_pred HhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 211 ~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
.|-|..++-.++.-+-.|| .+.+.+++|||+||+.+|++|..+
T Consensus 246 YMRDkERGVVWEETIIllP------------------------~~vr~VFLSATiPNA~qFAeWI~~ 288 (1041)
T KOG0948|consen 246 YMRDKERGVVWEETIILLP------------------------DNVRFVFLSATIPNARQFAEWICH 288 (1041)
T ss_pred hccccccceeeeeeEEecc------------------------ccceEEEEeccCCCHHHHHHHHHH
Confidence 9999988888888888888 789999999999999999999875
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.80 E-value=1.3e-18 Score=162.23 Aligned_cols=163 Identities=20% Similarity=0.205 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHH
Q 020452 60 IQKACIPAAAHQGK--DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137 (326)
Q Consensus 60 ~Q~~~i~~~l~~g~--dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 137 (326)
+|.++++.+. ++. ++++++|||+|||.+|++|++.. ..+++|++|+++|++
T Consensus 1 hQ~~~~~~~~-~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------------------~~~~~~~~P~~aL~~ 53 (357)
T TIGR03158 1 HQVATFEALQ-SKDADIIFNTAPTGAGKTLAWLTPLLHG--------------------------ENDTIALYPTNALIE 53 (357)
T ss_pred CHHHHHHHHH-cCCCCEEEEECCCCCCHHHHHHHHHHHc--------------------------CCCEEEEeChHHHHH
Confidence 5999999996 554 47889999999999999998841 226899999999999
Q ss_pred HHHHHHHHHHcCC----CcEEEEEEcCCCHHH--H------------------HHHHhcCCCEEEeCcHHHHHHHhcCCc
Q 020452 138 QVTDHLKEVAKGI----NVRVVPIVGGMSTEK--Q------------------ERLLKARPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 138 Q~~~~l~~~~~~~----~~~v~~~~g~~~~~~--~------------------~~~~~~~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
|+++.++.++... +..+..+.|.+..+. . .......++|+++||+.+..+++....
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~ 133 (357)
T TIGR03158 54 DQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYI 133 (357)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhcc
Confidence 9999999987532 566666776532220 0 011123688999999999776653211
Q ss_pred -----ccccCCCeeEEeecchhHhhhCCC-----HHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEee
Q 020452 194 -----HLVELHTLSFFVLDEADRMIENGH-----FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263 (326)
Q Consensus 194 -----~~~~l~~l~~lViDEah~l~~~~~-----~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 263 (326)
....+.+++++|+||+|.+..++. ......++.... ...+++++||
T Consensus 134 ~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~------------------------~~~~~i~lSA 189 (357)
T TIGR03158 134 DRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFE------------------------CRRKFVFLSA 189 (357)
T ss_pred CcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhh------------------------cCCcEEEEec
Confidence 112357899999999998764332 112333333333 3479999999
Q ss_pred eccCcHHHHHHh
Q 020452 264 TIALSADFRKKL 275 (326)
Q Consensus 264 Tl~~~~~~~~~l 275 (326)
|++. .+.+.|
T Consensus 190 T~~~--~~~~~l 199 (357)
T TIGR03158 190 TPDP--ALILRL 199 (357)
T ss_pred CCCH--HHHHHH
Confidence 9973 444444
No 72
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.80 E-value=5.4e-19 Score=171.94 Aligned_cols=179 Identities=21% Similarity=0.172 Sum_probs=132.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
+.+......---..-.++.+|.+....++ |+|+|+++|||+|||+++...++.++...
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~-------------------- 104 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWR-------------------- 104 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcC--------------------
Confidence 44444444433344489999999999885 99999999999999999999888887322
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
.+.++|+++|++-|+.|+...+..++.. -.+....||.........+-...+|++.||+.+..-|.++.. ..+++
T Consensus 105 -p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~--~~ls~ 179 (746)
T KOG0354|consen 105 -PKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLH--DELSD 179 (746)
T ss_pred -CcceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccc--cccce
Confidence 1359999999999999999777777544 344555566443333334555789999999999988876642 33789
Q ss_pred eeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 201 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 201 l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
+.++||||||+-....-+..+.+-+-.++. ...|++++|||+++..
T Consensus 180 fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~-----------------------~~~qILgLTASpG~~~ 225 (746)
T KOG0354|consen 180 FSLIVFDECHRTSKNHPYNNIMREYLDLKN-----------------------QGNQILGLTASPGSKL 225 (746)
T ss_pred EEEEEEcccccccccccHHHHHHHHHHhhh-----------------------ccccEEEEecCCCccH
Confidence 999999999998866666666644444441 3449999999999663
No 73
>PRK13766 Hef nuclease; Provisional
Probab=99.80 E-value=1.1e-17 Score=171.26 Aligned_cols=163 Identities=23% Similarity=0.280 Sum_probs=125.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 53 GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
+.-.|+++|..++..++ .+ |+++++|||+|||+++++++...+. . .+.++||++||
T Consensus 12 ~~~~~r~yQ~~~~~~~l-~~-n~lv~~ptG~GKT~~a~~~i~~~l~-~---------------------~~~~vLvl~Pt 67 (773)
T PRK13766 12 NTIEARLYQQLLAATAL-KK-NTLVVLPTGLGKTAIALLVIAERLH-K---------------------KGGKVLILAPT 67 (773)
T ss_pred CcCCccHHHHHHHHHHh-cC-CeEEEcCCCccHHHHHHHHHHHHHH-h---------------------CCCeEEEEeCc
Confidence 34488999999998875 44 9999999999999999998887762 1 13489999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
++|+.|+.+.++.++...+.++..++|+........ ...+++|+|+||+.+...+..+. ..+.+++++||||||++
T Consensus 68 ~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~-~~~~~~iiv~T~~~l~~~l~~~~---~~~~~~~liVvDEaH~~ 143 (773)
T PRK13766 68 KPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAE-LWEKAKVIVATPQVIENDLIAGR---ISLEDVSLLIFDEAHRA 143 (773)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHH-HHhCCCEEEECHHHHHHHHHcCC---CChhhCcEEEEECCccc
Confidence 999999999999987654557888888887665443 33467999999999977665432 56788999999999998
Q ss_pred hhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 213 ~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
.....+..+...+.... ...+++++|||...
T Consensus 144 ~~~~~~~~i~~~~~~~~------------------------~~~~il~lTaTP~~ 174 (773)
T PRK13766 144 VGNYAYVYIAERYHEDA------------------------KNPLVLGLTASPGS 174 (773)
T ss_pred cccccHHHHHHHHHhcC------------------------CCCEEEEEEcCCCC
Confidence 75544444444433222 45789999999753
No 74
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.78 E-value=2.1e-18 Score=170.64 Aligned_cols=165 Identities=15% Similarity=0.056 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHH---------HHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLA---------FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~---------~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
..+|+++++.+ .++++++++|+||||||.+ |++|.+..+..-. ....+.++++
T Consensus 166 ~~iQ~qil~~i-~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-----------------~~~~~~~ilv 227 (675)
T PHA02653 166 PDVQLKIFEAW-ISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-----------------PNFIERPIVL 227 (675)
T ss_pred HHHHHHHHHHH-HhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-----------------cccCCcEEEE
Confidence 34899999998 4899999999999999987 3344444332100 0123458999
Q ss_pred EeCcHHHHHHHHHHHHHHHcC---CCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEe
Q 020452 129 ITPTRELALQVTDHLKEVAKG---INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~~~~~---~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lV 205 (326)
++||++||.|+...+.+..+. .+..+...+|+... ..........+|+|+|++.. ...++++++||
T Consensus 228 t~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~----------l~~L~~v~~VV 296 (675)
T PHA02653 228 SLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT----------LNKLFDYGTVI 296 (675)
T ss_pred ECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc----------ccccccCCEEE
Confidence 999999999999999876654 35678889999873 22222223679999997521 13478899999
Q ss_pred ecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC-cHHHHHHhh
Q 020452 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL-SADFRKKLK 276 (326)
Q Consensus 206 iDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~-~~~~~~~l~ 276 (326)
+||||.+...+ +.+..++..+.. ..+|+++||||++. .+.+.+++.
T Consensus 297 IDEaHEr~~~~--DllL~llk~~~~-----------------------~~rq~ILmSATl~~dv~~l~~~~~ 343 (675)
T PHA02653 297 IDEVHEHDQIG--DIIIAVARKHID-----------------------KIRSLFLMTATLEDDRDRIKEFFP 343 (675)
T ss_pred ccccccCccch--hHHHHHHHHhhh-----------------------hcCEEEEEccCCcHhHHHHHHHhc
Confidence 99999987654 455555544431 33599999999973 345666554
No 75
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.78 E-value=8.3e-19 Score=163.94 Aligned_cols=152 Identities=20% Similarity=0.128 Sum_probs=103.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~ 153 (326)
++++.||||||||.+|+++++..+.. ..+.+++|++|+++|+.|+++.+..++.. .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~---------------------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~ 56 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS---------------------QKADRVIIALPTRATINAMYRRAKELFGS---N 56 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh---------------------CCCCeEEEEeehHHHHHHHHHHHHHHhCc---c
Confidence 58999999999999999999987532 12458999999999999999999998542 3
Q ss_pred EEEEEcCCCHH------------HHHHHH------hcCCCEEEeCcHHHHHHHhcCCc-ccccCC--CeeEEeecchhHh
Q 020452 154 VVPIVGGMSTE------------KQERLL------KARPELVVGTPGRLWELMSGGEK-HLVELH--TLSFFVLDEADRM 212 (326)
Q Consensus 154 v~~~~g~~~~~------------~~~~~~------~~~~~IlV~Tp~~l~~ll~~~~~-~~~~l~--~l~~lViDEah~l 212 (326)
++.++|+.... ...... ....+|+|+||+++...+..... ....+. ..+++|+||+|.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~ 136 (358)
T TIGR01587 57 LGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFY 136 (358)
T ss_pred cEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCC
Confidence 44445443210 000000 11367999999999887754211 111111 2378999999999
Q ss_pred hhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHh
Q 020452 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275 (326)
Q Consensus 213 ~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l 275 (326)
.+.++.. +..++..++. .+.|++++|||++ ..+.+++
T Consensus 137 ~~~~~~~-l~~~l~~l~~-----------------------~~~~~i~~SATlp--~~l~~~~ 173 (358)
T TIGR01587 137 DEYTLAL-ILAVLEVLKD-----------------------NDVPILLMSATLP--KFLKEYA 173 (358)
T ss_pred CHHHHHH-HHHHHHHHHH-----------------------cCCCEEEEecCch--HHHHHHH
Confidence 8764433 6666655541 4689999999998 3344443
No 76
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.78 E-value=6.6e-18 Score=170.78 Aligned_cols=155 Identities=21% Similarity=0.210 Sum_probs=117.0
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHH
Q 020452 63 ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142 (326)
Q Consensus 63 ~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 142 (326)
+.+..+ .++++++++|+||||||.+|.+++++... .+.+++|+.|+|++|.|+++.
T Consensus 9 ~i~~~l-~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------------------~~~~ilvlqPrR~aA~qiA~r 64 (819)
T TIGR01970 9 ALRDAL-AAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------------------IGGKIIMLEPRRLAARSAAQR 64 (819)
T ss_pred HHHHHH-HcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------------------cCCeEEEEeCcHHHHHHHHHH
Confidence 444444 67899999999999999999999987641 134899999999999999999
Q ss_pred HHHH-HcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchh-HhhhCCCHHH
Q 020452 143 LKEV-AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD-RMIENGHFRE 220 (326)
Q Consensus 143 l~~~-~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah-~l~~~~~~~~ 220 (326)
+... ....|..|+..+++... ...+.+|+|+||++|++++.+. ..++++++|||||+| ++++.++.-.
T Consensus 65 va~~~~~~~g~~VGy~vr~~~~------~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ 134 (819)
T TIGR01970 65 LASQLGEAVGQTVGYRVRGENK------VSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLA 134 (819)
T ss_pred HHHHhCCCcCcEEEEEEccccc------cCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHH
Confidence 8644 34456677766655331 2346799999999999998753 568999999999999 5777666433
Q ss_pred -HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhh
Q 020452 221 -LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276 (326)
Q Consensus 221 -i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 276 (326)
+..+...++ ...|+|+||||+... .+.+++.
T Consensus 135 ll~~i~~~lr------------------------~dlqlIlmSATl~~~-~l~~~l~ 166 (819)
T TIGR01970 135 LALDVQSSLR------------------------EDLKILAMSATLDGE-RLSSLLP 166 (819)
T ss_pred HHHHHHHhcC------------------------CCceEEEEeCCCCHH-HHHHHcC
Confidence 344555565 678999999999843 3555554
No 77
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.77 E-value=2e-17 Score=165.64 Aligned_cols=122 Identities=21% Similarity=0.303 Sum_probs=99.3
Q ss_pred CChHHHHHHHHHHHhc--CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 020452 56 EPTPIQKACIPAAAHQ--GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~--g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 133 (326)
.+++.|++++..+... ++++++.++||||||.+|+.++...+.. +.++||++|++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----------------------g~~vLvLvPt~ 200 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----------------------GKQALVLVPEI 200 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----------------------CCeEEEEeCcH
Confidence 5899999999998642 4789999999999999998877665521 44899999999
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecch
Q 020452 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 134 ~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEa 209 (326)
+|+.|+++.+++.+ +.++..++|+.+..+..+.+ ...++|+|||++.+. ..+++++++|+||+
T Consensus 201 ~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----------~p~~~l~liVvDEe 267 (679)
T PRK05580 201 ALTPQMLARFRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----------LPFKNLGLIIVDEE 267 (679)
T ss_pred HHHHHHHHHHHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----------ccccCCCEEEEECC
Confidence 99999999998864 57889999998876554433 346899999998763 34678999999999
Q ss_pred hHhh
Q 020452 210 DRMI 213 (326)
Q Consensus 210 h~l~ 213 (326)
|...
T Consensus 268 h~~s 271 (679)
T PRK05580 268 HDSS 271 (679)
T ss_pred Cccc
Confidence 9765
No 78
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.76 E-value=7.1e-18 Score=170.82 Aligned_cols=155 Identities=21% Similarity=0.228 Sum_probs=115.4
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHH
Q 020452 63 ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142 (326)
Q Consensus 63 ~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 142 (326)
+.+..+ .++++++++|+||||||.+|.+++++... ...+++|+.|+|++|.|+++.
T Consensus 12 ~i~~~l-~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----------------------~~~~ilvlqPrR~aA~qia~r 67 (812)
T PRK11664 12 ELLTAL-KTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----------------------INGKIIMLEPRRLAARNVAQR 67 (812)
T ss_pred HHHHHH-HhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----------------------cCCeEEEECChHHHHHHHHHH
Confidence 344444 67899999999999999999998886421 123899999999999999999
Q ss_pred HHHH-HcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhH-hhhCCC-HH
Q 020452 143 LKEV-AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MIENGH-FR 219 (326)
Q Consensus 143 l~~~-~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~-l~~~~~-~~ 219 (326)
+... ....|..++..+++... .....+|+|+|||+|.+++... ..++++++|||||+|. .++..+ ..
T Consensus 68 va~~l~~~~g~~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ 137 (812)
T PRK11664 68 LAEQLGEKPGETVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALA 137 (812)
T ss_pred HHHHhCcccCceEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHH
Confidence 8654 44567778877776542 1234689999999999988753 5689999999999996 444433 22
Q ss_pred HHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhh
Q 020452 220 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276 (326)
Q Consensus 220 ~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 276 (326)
.+..++..++ .+.|+|+||||++. ..+.+++.
T Consensus 138 ll~~i~~~lr------------------------~~lqlilmSATl~~-~~l~~~~~ 169 (812)
T PRK11664 138 LLLDVQQGLR------------------------DDLKLLIMSATLDN-DRLQQLLP 169 (812)
T ss_pred HHHHHHHhCC------------------------ccceEEEEecCCCH-HHHHHhcC
Confidence 3344555565 67899999999974 34555554
No 79
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.75 E-value=6e-17 Score=129.50 Aligned_cols=144 Identities=42% Similarity=0.598 Sum_probs=109.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCc
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~ 152 (326)
+++++.+|||+|||..++..+....... ...+++|++|++.++.|..+.+...... +.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---------------------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~ 58 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---------------------KGGQVLVLAPTRELANQVAERLKELFGE-GI 58 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---------------------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-Cc
Confidence 4689999999999999988887765321 2348999999999999999999988765 67
Q ss_pred EEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCC
Q 020452 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 232 (326)
Q Consensus 153 ~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~ 232 (326)
.+..+.+.............+.+|+++|++.+...+.... ......+++|+||+|.+.................
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~--- 132 (144)
T cd00046 59 KVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLP--- 132 (144)
T ss_pred EEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCC---
Confidence 7888888777666655566789999999999988775432 3345688999999999986654443222222222
Q ss_pred CCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 233 GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
...+++++|||+
T Consensus 133 ---------------------~~~~~i~~saTp 144 (144)
T cd00046 133 ---------------------KDRQVLLLSATP 144 (144)
T ss_pred ---------------------ccceEEEEeccC
Confidence 568999999995
No 80
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.74 E-value=2.2e-17 Score=162.49 Aligned_cols=134 Identities=27% Similarity=0.371 Sum_probs=111.4
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|..+.+.+ ..|+ ++.++||+|||++|.+|++-..+. +.++.|++|
T Consensus 53 lg~-~p~~vQlig~~~l-~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------------------G~~V~VvTp 105 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIAL-HKGK--IAEMKTGEGKTLTATLPAYLNALT-----------------------GKGVHVVTV 105 (745)
T ss_pred hCC-CccchHHhhhhhh-cCCc--eeeecCCCccHHHHHHHHHHHHHh-----------------------CCCEEEEcC
Confidence 677 8999999999877 4665 999999999999999999644432 226999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lViD 207 (326)
|++||.|.++.+..+...+|+++++++|+.+........ .++|++|||++| .++++.+. .....++.+.++|+|
T Consensus 106 t~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIID 183 (745)
T TIGR00963 106 NDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIID 183 (745)
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEee
Confidence 999999999999999999999999999998875544333 589999999999 89987652 112467889999999
Q ss_pred chhHhhh
Q 020452 208 EADRMIE 214 (326)
Q Consensus 208 Eah~l~~ 214 (326)
|+|.|+-
T Consensus 184 EaDs~LI 190 (745)
T TIGR00963 184 EVDSILI 190 (745)
T ss_pred cHHHHhH
Confidence 9999873
No 81
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.73 E-value=4.2e-17 Score=156.85 Aligned_cols=172 Identities=24% Similarity=0.365 Sum_probs=133.4
Q ss_pred HHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 020452 47 KSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 125 (326)
Q Consensus 47 ~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
..|++ +||..+++-|.++|..++ +|+|+++..|||.||++||.+|.+-. ..-
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l-~g~d~lvvmPTGgGKSlCyQiPAll~--------------------------~G~ 59 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALL-SGKDTLVVMPTGGGKSLCYQIPALLL--------------------------EGL 59 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHH-cCCcEEEEccCCCCcchHhhhHHHhc--------------------------CCC
Confidence 44555 799999999999999995 89999999999999999999998864 116
Q ss_pred EEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCCe
Q 020452 126 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTL 201 (326)
Q Consensus 126 ~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l 201 (326)
+|||.|..+|.+.+.+.++.. |+++..+.+..+..+....+. ...+++.-+|+++..--. .....--.+
T Consensus 60 TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f---~~~L~~~~i 132 (590)
T COG0514 60 TLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRF---LELLKRLPI 132 (590)
T ss_pred EEEECchHHHHHHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHH---HHHHHhCCC
Confidence 999999999999999999887 889999998877665544333 347999999999853211 011224558
Q ss_pred eEEeecchhHhhhCC--CHHHHH---HHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc--HHHHHH
Q 020452 202 SFFVLDEADRMIENG--HFRELQ---SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS--ADFRKK 274 (326)
Q Consensus 202 ~~lViDEah~l~~~~--~~~~i~---~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~--~~~~~~ 274 (326)
.++||||||++.+|| |...+. .+...++ +.+++++|||-+.. .|+...
T Consensus 133 ~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-------------------------~~p~~AlTATA~~~v~~DI~~~ 187 (590)
T COG0514 133 SLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-------------------------NPPVLALTATATPRVRDDIREQ 187 (590)
T ss_pred ceEEechHHHHhhcCCccCHhHHHHHHHHhhCC-------------------------CCCEEEEeCCCChHHHHHHHHH
Confidence 899999999999997 655544 4444443 57899999998744 566666
Q ss_pred hhc
Q 020452 275 LKH 277 (326)
Q Consensus 275 l~~ 277 (326)
|..
T Consensus 188 L~l 190 (590)
T COG0514 188 LGL 190 (590)
T ss_pred hcC
Confidence 654
No 82
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=8.2e-17 Score=157.49 Aligned_cols=133 Identities=25% Similarity=0.300 Sum_probs=109.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|..+++.++ .|+ |+.+.||+|||++|.+|++.... .+++++|++|
T Consensus 100 lg~-~p~~VQ~~~~~~ll-~G~--Iae~~TGeGKTla~~lp~~~~al-----------------------~G~~v~VvTp 152 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALL-SGR--LAEMQTGEGKTLTATLPAGTAAL-----------------------AGLPVHVITV 152 (656)
T ss_pred hCC-CCChHHHHHHHHHh-CCC--eeeeeCCCCcHHHHHHHHHHHhh-----------------------cCCeEEEEcC
Confidence 677 89999999999995 777 99999999999999999998653 2458999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc-----------------
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK----------------- 193 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~----------------- 193 (326)
|++||.|.++.+..++..+|+++++++|+.+.. .+....++||+|||...| .++|+.+-.
T Consensus 153 treLA~qdae~~~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~ 230 (656)
T PRK12898 153 NDYLAERDAELMRPLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHG 230 (656)
T ss_pred cHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhcc
Confidence 999999999999999999999999999998753 334445799999999888 666654311
Q ss_pred -----ccccCCCeeEEeecchhHhh
Q 020452 194 -----HLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 194 -----~~~~l~~l~~lViDEah~l~ 213 (326)
.......+.+.||||+|.++
T Consensus 231 ~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 231 RSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred ccCchhhhcccccceeEeeccccee
Confidence 01123557899999999775
No 83
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=9.7e-17 Score=160.12 Aligned_cols=134 Identities=22% Similarity=0.340 Sum_probs=110.1
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|..+++.+ ..|+ ++.+.||+|||+++++|++...+. +.++.|++|
T Consensus 75 ~g~-~p~~vQl~~~~~l-~~G~--Iaem~TGeGKTL~a~lp~~l~al~-----------------------G~~v~VvTp 127 (790)
T PRK09200 75 LGM-RPYDVQLIGALVL-HEGN--IAEMQTGEGKTLTATMPLYLNALE-----------------------GKGVHLITV 127 (790)
T ss_pred hCC-CCchHHHHhHHHH-cCCc--eeeecCCCcchHHHHHHHHHHHHc-----------------------CCCeEEEeC
Confidence 687 8999999999877 4665 999999999999999999865542 458999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lViD 207 (326)
|++||.|.++.+..+...+|++++++.|+.+...+.+.. .+++|++|||+++ .+++...- .....+..+.++|+|
T Consensus 128 t~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvD 206 (790)
T PRK09200 128 NDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIID 206 (790)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhcccccceEEEe
Confidence 999999999999999999999999999998843333333 4699999999999 66665431 112346789999999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|||.|+
T Consensus 207 EaDsiL 212 (790)
T PRK09200 207 EIDSIL 212 (790)
T ss_pred ccccce
Confidence 999887
No 84
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.71 E-value=1.1e-16 Score=158.60 Aligned_cols=135 Identities=24% Similarity=0.308 Sum_probs=102.2
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|......+ ..| .++.++||+|||++|++|++...+. +..++|++|
T Consensus 67 lgl-rpydVQlig~l~l-~~G--~Iaem~TGeGKTLta~Lpa~l~aL~-----------------------g~~V~VVTp 119 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVL-HQG--NIAEMKTGEGKTLTATMPLYLNALT-----------------------GKGAMLVTT 119 (762)
T ss_pred cCC-CccHHHHHHHHHh-cCC--ceeEecCCcchHHHHHHHHHHHhhc-----------------------CCceEEeCC
Confidence 566 6667776666554 344 6999999999999999998765532 336999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCC---HHHHHHHHhcCCCEEEeCcHHH-HHHHhcC---CcccccCCCeeEE
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMS---TEKQERLLKARPELVVGTPGRL-WELMSGG---EKHLVELHTLSFF 204 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~---~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~---~~~~~~l~~l~~l 204 (326)
+++||.|.++.+..+...+|+++..++++.. .....+....+++|++|||++| .+++... ......+..+.++
T Consensus 120 n~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~ 199 (762)
T TIGR03714 120 NDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYV 199 (762)
T ss_pred CHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEE
Confidence 9999999999999999999999998877622 2222233335799999999999 5666432 1112346789999
Q ss_pred eecchhHhh
Q 020452 205 VLDEADRMI 213 (326)
Q Consensus 205 ViDEah~l~ 213 (326)
|+||||.|+
T Consensus 200 IVDEaDsIL 208 (762)
T TIGR03714 200 IVDEVDSVL 208 (762)
T ss_pred EEecHhhHh
Confidence 999999996
No 85
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=5.6e-16 Score=154.79 Aligned_cols=133 Identities=24% Similarity=0.339 Sum_probs=108.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-..--.+ +.|+ |..++||+|||++|.+|++...+. +..++|++|
T Consensus 79 lg~-~~ydvQliGg~~L-h~G~--Iaem~TGeGKTL~a~Lpa~~~al~-----------------------G~~V~VvTp 131 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVL-HEGN--IAEMRTGEGKTLVATLPAYLNAIS-----------------------GRGVHIVTV 131 (896)
T ss_pred cCC-CcchHHHhhhhhh-ccCc--cccccCCCCchHHHHHHHHHHHhc-----------------------CCCEEEEcC
Confidence 566 7788887766444 4554 889999999999999999977643 236999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCcc-c--ccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEKH-L--VELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~~-~--~~l~~l~~lViD 207 (326)
|++||.|.++.+..+...+|+++++++|+.+........ .+||+||||++| .++++.+... . .....+.++|+|
T Consensus 132 n~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvD 209 (896)
T PRK13104 132 NDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVD 209 (896)
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEec
Confidence 999999999999999999999999999998877665444 589999999999 9999765210 0 112579999999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|||.|+
T Consensus 210 EaDsiL 215 (896)
T PRK13104 210 EVDSIL 215 (896)
T ss_pred cHhhhh
Confidence 999887
No 86
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.66 E-value=1.6e-15 Score=137.73 Aligned_cols=173 Identities=24% Similarity=0.347 Sum_probs=129.4
Q ss_pred HHHHHHHH-CCCCCC-hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCC
Q 020452 44 LLMKSIYR-LGFKEP-TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK 121 (326)
Q Consensus 44 ~i~~~l~~-~g~~~p-~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (326)
.+..+|++ +|+..+ ++.|++++..+....+||.+++|||+||++||.+|.+..
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------------------- 60 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------------------- 60 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------------------------
Confidence 46677777 677655 899999999998888899999999999999999999864
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh------cCCCEEEeCcHHHH-----HHHhc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK------ARPELVVGTPGRLW-----ELMSG 190 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~~IlV~Tp~~l~-----~ll~~ 190 (326)
+...||+.|..+|..++.+.+..+ .+++..+.+..+..+..+.+. .+..++..||+... .+++.
T Consensus 61 -~gITIV~SPLiALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~ 135 (641)
T KOG0352|consen 61 -GGITIVISPLIALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG 135 (641)
T ss_pred -CCeEEEehHHHHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH
Confidence 227899999999999999998887 667777777777666555443 25679999998752 33432
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCC--HH---HHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGH--FR---ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~--~~---~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
..+-+-+.++|+||||+..+||. .. .+..+.+.+ ....-++++||-
T Consensus 136 ----L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~-------------------------~~vpwvALTATA 186 (641)
T KOG0352|consen 136 ----LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVC-------------------------PGVPWVALTATA 186 (641)
T ss_pred ----HhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhC-------------------------CCCceEEeeccc
Confidence 13345589999999999998863 33 344444444 357788999998
Q ss_pred cCc--HHHHHHh
Q 020452 266 ALS--ADFRKKL 275 (326)
Q Consensus 266 ~~~--~~~~~~l 275 (326)
+-. +|+..-|
T Consensus 187 ~~~VqEDi~~qL 198 (641)
T KOG0352|consen 187 NAKVQEDIAFQL 198 (641)
T ss_pred ChhHHHHHHHHH
Confidence 632 4554444
No 87
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.66 E-value=3e-16 Score=154.17 Aligned_cols=173 Identities=20% Similarity=0.265 Sum_probs=131.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 53 GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
+| .|..||++.+... ..+..++++|||.+|||++-.. +++..++.. ...-+|+++|+
T Consensus 509 dF-~Pd~WQ~elLDsv-Dr~eSavIVAPTSaGKTfisfY-~iEKVLRes--------------------D~~VVIyvaPt 565 (1330)
T KOG0949|consen 509 DF-CPDEWQRELLDSV-DRNESAVIVAPTSAGKTFISFY-AIEKVLRES--------------------DSDVVIYVAPT 565 (1330)
T ss_pred cc-CCcHHHHHHhhhh-hcccceEEEeeccCCceeccHH-HHHHHHhhc--------------------CCCEEEEecch
Confidence 45 7999999999987 7889999999999999988644 444444432 13379999999
Q ss_pred HHHHHHHHHHHHHHHcCCC-cEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhH
Q 020452 133 RELALQVTDHLKEVAKGIN-VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~ 211 (326)
++|+.|+...+...+.... .+...+.|....+.+.. --+|+|+|+.|+.+..+|........+..+++++|+||+|.
T Consensus 566 KaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~ 643 (1330)
T KOG0949|consen 566 KALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHL 643 (1330)
T ss_pred HHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhh
Confidence 9999999999888764322 23333444443332222 12699999999999998876433446678999999999999
Q ss_pred hhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhh
Q 020452 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276 (326)
Q Consensus 212 l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 276 (326)
+....-.-.++.++...+ +.++++|||+.|+..|-+|+.
T Consensus 644 iG~~ed~l~~Eqll~li~--------------------------CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 644 IGNEEDGLLWEQLLLLIP--------------------------CPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred ccccccchHHHHHHHhcC--------------------------CCeeEEecccCCHHHHHHHHH
Confidence 986655556666666554 899999999999999999998
No 88
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.66 E-value=8.8e-16 Score=129.24 Aligned_cols=156 Identities=19% Similarity=0.194 Sum_probs=102.2
Q ss_pred CChHHHHHHHHHHHh------cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 56 EPTPIQKACIPAAAH------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~------~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
+|+++|.+++..++. ..+++++.+|||||||.+++..+.... . +++|+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-------------------------~-~~l~~ 56 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-------------------------R-KVLIV 56 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-------------------------C-EEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-------------------------c-ceeEe
Confidence 689999999988853 268999999999999999876555543 1 79999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEE-----------EEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC------
Q 020452 130 TPTRELALQVTDHLKEVAKGINVRVVP-----------IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE------ 192 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~~v~~-----------~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~------ 192 (326)
+|+..|+.|+.+.+..+.......... ..................+++++|...+........
T Consensus 57 ~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~ 136 (184)
T PF04851_consen 57 APNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESA 136 (184)
T ss_dssp ESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH--------
T ss_pred cCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccch
Confidence 999999999999997665421111000 000011111222234467899999999987765321
Q ss_pred --cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 193 --KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 193 --~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.........++||+||||++....- ...++. . ....+|+||||..
T Consensus 137 ~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~-~-------------------------~~~~~l~lTATp~ 183 (184)
T PF04851_consen 137 RRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE-F-------------------------KAAFILGLTATPF 183 (184)
T ss_dssp -GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH-S-------------------------SCCEEEEEESS-S
T ss_pred hhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc-C-------------------------CCCeEEEEEeCcc
Confidence 1112345678999999998875431 334443 2 4678999999974
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=5.7e-15 Score=143.09 Aligned_cols=130 Identities=21% Similarity=0.227 Sum_probs=94.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEE
Q 020452 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155 (326)
Q Consensus 76 lv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~ 155 (326)
++.||||||||.+|+..+...+ .. +.++||++|+++|+.|+++.+++.+ +.++.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~~----------------------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~ 54 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-AL----------------------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVA 54 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-Hc----------------------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEE
Confidence 4689999999999976554443 21 4489999999999999999998864 56788
Q ss_pred EEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCC---C---HHHHHHHH
Q 020452 156 PIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG---H---FRELQSII 225 (326)
Q Consensus 156 ~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~---~---~~~i~~il 225 (326)
.++|+.+..+..+.+. ...+|+|||+..+. ..+.+++++||||.|...-.+ . ...+....
T Consensus 55 vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r 124 (505)
T TIGR00595 55 VLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR 124 (505)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHH
Confidence 8999887765544333 36799999998762 346789999999999765221 1 12333333
Q ss_pred HhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 226 DMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
... .+.++|++|||.+
T Consensus 125 a~~-------------------------~~~~vil~SATPs 140 (505)
T TIGR00595 125 AKK-------------------------FNCPVVLGSATPS 140 (505)
T ss_pred HHh-------------------------cCCCEEEEeCCCC
Confidence 333 4689999999955
No 90
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=2.5e-15 Score=148.73 Aligned_cols=151 Identities=14% Similarity=0.145 Sum_probs=105.6
Q ss_pred CChHHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 020452 56 EPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 133 (326)
.++|+|++++..++.+| +..++++|||+|||++.+..+.. + +.++|||||+.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-------------------------~k~tLILvps~ 308 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-------------------------KKSCLVLCTSA 308 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-------------------------CCCEEEEeCcH
Confidence 58999999999987555 37899999999999998765432 2 12699999999
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC---cc--cccCCCeeEEeecc
Q 020452 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE---KH--LVELHTLSFFVLDE 208 (326)
Q Consensus 134 ~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~---~~--~~~l~~l~~lViDE 208 (326)
.|+.|+.+.+.++.......+..++|+.... ......|+|+|++.+.....+.. .. .+.-..+++||+||
T Consensus 309 ~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DE 383 (732)
T TIGR00603 309 VSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDE 383 (732)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEc
Confidence 9999999999998654445666666653321 11236899999987743221110 00 11124578999999
Q ss_pred hhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 209 ah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
||++... ....++..+. ....+++|||+.
T Consensus 384 vH~lpA~----~fr~il~~l~-------------------------a~~RLGLTATP~ 412 (732)
T TIGR00603 384 VHVVPAA----MFRRVLTIVQ-------------------------AHCKLGLTATLV 412 (732)
T ss_pred cccccHH----HHHHHHHhcC-------------------------cCcEEEEeecCc
Confidence 9998643 3444555554 245799999996
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.61 E-value=7.2e-15 Score=149.13 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=110.2
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..|+|+|+.+.... .++..+++.+|||+|||.+++..+...+ .. ++..+++|..||++
T Consensus 285 ~~p~p~Q~~~~~~~-~~pgl~ileApTGsGKTEAAL~~A~~l~-~~--------------------~~~~gi~~aLPT~A 342 (878)
T PRK09694 285 YQPRQLQTLVDALP-LQPGLTIIEAPTGSGKTEAALAYAWRLI-DQ--------------------GLADSIIFALPTQA 342 (878)
T ss_pred CCChHHHHHHHhhc-cCCCeEEEEeCCCCCHHHHHHHHHHHHH-Hh--------------------CCCCeEEEECcHHH
Confidence 48999999886443 3567889999999999999877665433 21 22348999999999
Q ss_pred HHHHHHHHHHHHHcCC--CcEEEEEEcCCCHHHHH---------------------HHHh---c---CCCEEEeCcHHHH
Q 020452 135 LALQVTDHLKEVAKGI--NVRVVPIVGGMSTEKQE---------------------RLLK---A---RPELVVGTPGRLW 185 (326)
Q Consensus 135 L~~Q~~~~l~~~~~~~--~~~v~~~~g~~~~~~~~---------------------~~~~---~---~~~IlV~Tp~~l~ 185 (326)
+++|+++++.++.+.. ...+.+.+|........ ..+. + -.+|+|||...++
T Consensus 343 tan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL 422 (878)
T PRK09694 343 TANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVL 422 (878)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHH
Confidence 9999999998765432 34677777765422110 1111 1 2689999998887
Q ss_pred HHHhcCCc---ccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEe
Q 020452 186 ELMSGGEK---HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262 (326)
Q Consensus 186 ~ll~~~~~---~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 262 (326)
...-.... +...+. -++|||||+|.+ +......+..+++.+.. ....+|+||
T Consensus 423 ~a~l~~kh~~lR~~~La-~svvIiDEVHAy-D~ym~~lL~~~L~~l~~-----------------------~g~~vIllS 477 (878)
T PRK09694 423 ISVLPVKHRFIRGFGLG-RSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ-----------------------AGGSVILLS 477 (878)
T ss_pred HHHHccchHHHHHHhhc-cCeEEEechhhC-CHHHHHHHHHHHHHHHh-----------------------cCCcEEEEe
Confidence 43322110 011111 258999999987 33334556666665541 456799999
Q ss_pred eeccC
Q 020452 263 ATIAL 267 (326)
Q Consensus 263 ATl~~ 267 (326)
||+|.
T Consensus 478 ATLP~ 482 (878)
T PRK09694 478 ATLPA 482 (878)
T ss_pred CCCCH
Confidence 99983
No 92
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.59 E-value=6.1e-15 Score=141.03 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=88.2
Q ss_pred CChHHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAAAHQ---GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~---g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.|+++|++++..+... ++..++++|||+|||.+++..+... +.++|||||+
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------------------------~~~~Lvlv~~ 89 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------------------------KRSTLVLVPT 89 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------------------------cCCEEEEECc
Confidence 6999999999999644 8899999999999999886655443 1249999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHH--HhcCCcccccCCCeeEEeecchh
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL--MSGGEKHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~l--l~~~~~~~~~l~~l~~lViDEah 210 (326)
++|+.|+++.+....... ..++.+.|+... .. . ..|.|+|.+.+... +.. ...+...+||+||||
T Consensus 90 ~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~-~~-----~-~~i~vat~qtl~~~~~l~~-----~~~~~~~liI~DE~H 156 (442)
T COG1061 90 KELLDQWAEALKKFLLLN-DEIGIYGGGEKE-LE-----P-AKVTVATVQTLARRQLLDE-----FLGNEFGLIIFDEVH 156 (442)
T ss_pred HHHHHHHHHHHHHhcCCc-cccceecCceec-cC-----C-CcEEEEEhHHHhhhhhhhh-----hcccccCEEEEEccc
Confidence 999999987777764422 123333333221 11 0 36999999888663 221 223468999999999
Q ss_pred HhhhCCC
Q 020452 211 RMIENGH 217 (326)
Q Consensus 211 ~l~~~~~ 217 (326)
++....+
T Consensus 157 h~~a~~~ 163 (442)
T COG1061 157 HLPAPSY 163 (442)
T ss_pred cCCcHHH
Confidence 9986544
No 93
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.57 E-value=8e-15 Score=144.57 Aligned_cols=199 Identities=19% Similarity=0.211 Sum_probs=153.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHH--HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACI--PAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 109 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i--~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~ 109 (326)
....|..-+++....-..+..|...++.||.+++ +.++ .++|++..+||+.|||+++.+.++..++-.+.
T Consensus 199 l~~~~a~~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~rr------- 270 (1008)
T KOG0950|consen 199 LLFGFAKRLPTKVSHLYAKDKGILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCRRR------- 270 (1008)
T ss_pred hhhhhhhcCchHHHHHHHHhhhHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHHhh-------
Confidence 3333444334444444456688999999999998 5664 89999999999999999999988887765432
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHh
Q 020452 110 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~ 189 (326)
.++.+.|..+.+..-...+..+....|+.+...+|....... .+.-++.|||.++-..+++
T Consensus 271 ---------------~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin 331 (1008)
T KOG0950|consen 271 ---------------NVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLIN 331 (1008)
T ss_pred ---------------ceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHH
Confidence 689999999999999999999999899988877766554332 2345799999999876664
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
.. ..-..++.++++|+||.|.+.+.+++..++.++..+-..+.. ...|+|++|||++|..
T Consensus 332 ~l-ie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~-------------------~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 332 SL-IEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLE-------------------TSVQIIGMSATIPNNS 391 (1008)
T ss_pred HH-HhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccc-------------------cceeEeeeecccCChH
Confidence 32 122346779999999999999999999999988776522211 2378999999999999
Q ss_pred HHHHHhhc
Q 020452 270 DFRKKLKH 277 (326)
Q Consensus 270 ~~~~~l~~ 277 (326)
.+.+||..
T Consensus 392 lL~~~L~A 399 (1008)
T KOG0950|consen 392 LLQDWLDA 399 (1008)
T ss_pred HHHHHhhh
Confidence 99999974
No 94
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=2.6e-14 Score=142.70 Aligned_cols=133 Identities=23% Similarity=0.328 Sum_probs=109.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-...-.+ +.|+ +..+.||+|||+++.+|++-..+. +..+-|++|
T Consensus 78 lg~-~~~dvQlig~l~L-~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------------------G~~V~IvTp 130 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVL-HEGK--IAEMKTGEGKTLVATLPAYLNALT-----------------------GKGVHVVTV 130 (830)
T ss_pred hCC-CCCccHHHhhHHh-cCCc--hhhhhcCCCcHHHHHHHHHHHHHc-----------------------CCCEEEEec
Confidence 677 8899998887554 5664 889999999999999999644332 224779999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lViD 207 (326)
|..||.|.++.+..+...+|++++++.|+.+...+.... .++|++|||++| .++++.+.. .......+.++|+|
T Consensus 131 n~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvD 208 (830)
T PRK12904 131 NDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVD 208 (830)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEe
Confidence 999999999999999999999999999998887766654 489999999999 899975521 11236779999999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|||.|+
T Consensus 209 EaDsiL 214 (830)
T PRK12904 209 EVDSIL 214 (830)
T ss_pred chhhhe
Confidence 999887
No 95
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.56 E-value=9.6e-14 Score=133.89 Aligned_cols=142 Identities=25% Similarity=0.383 Sum_probs=114.8
Q ss_pred CCCHHHHHH-HHHCCCCCChHHHHHHHHHHHhc---C--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 40 RLHPLLMKS-IYRLGFKEPTPIQKACIPAAAHQ---G--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 40 ~l~~~i~~~-l~~~g~~~p~~~Q~~~i~~~l~~---g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
+....+++. +..+.| ++|..|++++..+... . .+=++++.-|||||.+++++++..+.
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~--------------- 309 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE--------------- 309 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---------------
Confidence 344444444 477899 8999999999998421 1 25589999999999999999998773
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHh
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMS 189 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~ 189 (326)
.|.++...+||--||+|-++.+.+++..+|++|..++|..........+. ...+|+|||- .++.
T Consensus 310 --------~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH----ALiQ 377 (677)
T COG1200 310 --------AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH----ALIQ 377 (677)
T ss_pred --------cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc----hhhh
Confidence 36699999999999999999999999999999999999988665544333 3589999994 4454
Q ss_pred cCCcccccCCCeeEEeecchhHhh
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~ 213 (326)
.. ..|+++.++|+||=|+..
T Consensus 378 d~----V~F~~LgLVIiDEQHRFG 397 (677)
T COG1200 378 DK----VEFHNLGLVIIDEQHRFG 397 (677)
T ss_pred cc----eeecceeEEEEecccccc
Confidence 33 779999999999999875
No 96
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.55 E-value=8.6e-14 Score=124.88 Aligned_cols=182 Identities=21% Similarity=0.299 Sum_probs=133.2
Q ss_pred ccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 020452 37 NELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA 115 (326)
Q Consensus 37 ~~l~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~ 115 (326)
++++++....+.|+. +....++|.|..+|...+ .|.++++..|||.||++||.+|++-.
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~m-a~ed~~lil~tgggkslcyqlpal~a------------------- 133 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATM-AGEDAFLILPTGGGKSLCYQLPALCA------------------- 133 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhh-ccCceEEEEeCCCccchhhhhhHHhc-------------------
Confidence 467888888888866 667789999999999984 99999999999999999999998753
Q ss_pred hhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH---H-h--cCCCEEEeCcHHHHH---
Q 020452 116 EKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---L-K--ARPELVVGTPGRLWE--- 186 (326)
Q Consensus 116 ~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~-~--~~~~IlV~Tp~~l~~--- 186 (326)
...+|+++|...|++++.-.++.+ |+....+....+.+...+. + + ....++..||+++..
T Consensus 134 -------dg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~ 202 (695)
T KOG0353|consen 134 -------DGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKK 202 (695)
T ss_pred -------CCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHH
Confidence 237999999999999988888887 6665555555544332221 1 1 245689999999853
Q ss_pred HHhcCCcccccCCCeeEEeecchhHhhhCCC-----HHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEE
Q 020452 187 LMSGGEKHLVELHTLSFFVLDEADRMIENGH-----FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261 (326)
Q Consensus 187 ll~~~~~~~~~l~~l~~lViDEah~l~~~~~-----~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~ 261 (326)
+|+.. .+......++++.+||+|+..+||. +..+..+.+++ ++..++++
T Consensus 203 ~mnkl-eka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf-------------------------~~~~iigl 256 (695)
T KOG0353|consen 203 FMNKL-EKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQF-------------------------KGAPIIGL 256 (695)
T ss_pred HHHHH-HHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhC-------------------------CCCceeee
Confidence 23221 1224456789999999999998864 34444444555 46789999
Q ss_pred eeeccCc--HHHHHHh
Q 020452 262 SATIALS--ADFRKKL 275 (326)
Q Consensus 262 SATl~~~--~~~~~~l 275 (326)
+||-++- +|..+.|
T Consensus 257 tatatn~vl~d~k~il 272 (695)
T KOG0353|consen 257 TATATNHVLDDAKDIL 272 (695)
T ss_pred ehhhhcchhhHHHHHH
Confidence 9999865 3444444
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.53 E-value=7.2e-14 Score=145.59 Aligned_cols=134 Identities=22% Similarity=0.207 Sum_probs=88.8
Q ss_pred CChHHHHHHHHHHH---h-cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAA---H-QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l---~-~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.++++|.+|+..+. . ..+..+++++||||||++++. ++.++.+. ....++|||+|
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~--------------------~~~~rVLfLvD 471 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA--------------------KRFRRILFLVD 471 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc--------------------CccCeEEEEec
Confidence 58999999997764 2 246899999999999998644 44444332 12348999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC--cccccCCCeeEEeecch
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE--KHLVELHTLSFFVLDEA 209 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~--~~~~~l~~l~~lViDEa 209 (326)
+++|+.|..+.+..+....+..+..+++...... ........|+|+|...+...+.... .....+..+++||+|||
T Consensus 472 R~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEa 549 (1123)
T PRK11448 472 RSALGEQAEDAFKDTKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEA 549 (1123)
T ss_pred HHHHHHHHHHHHHhcccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECC
Confidence 9999999999998873322211111222111111 1123357899999999877653221 11234678899999999
Q ss_pred hHh
Q 020452 210 DRM 212 (326)
Q Consensus 210 h~l 212 (326)
|+-
T Consensus 550 HRs 552 (1123)
T PRK11448 550 HRG 552 (1123)
T ss_pred CCC
Confidence 985
No 98
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.51 E-value=5.4e-14 Score=142.73 Aligned_cols=175 Identities=23% Similarity=0.265 Sum_probs=128.9
Q ss_pred HHHHH-HHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCC
Q 020452 45 LMKSI-YRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH 123 (326)
Q Consensus 45 i~~~l-~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (326)
....+ ..+|...+++-|.++|..+ ..|+|+++.+|||.||++||.+|++-. +
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~-l~Gkd~fvlmpTG~GKSLCYQlPA~l~--------------------------~ 304 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINAT-LSGKDCFVLMPTGGGKSLCYQLPALLL--------------------------G 304 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHH-HcCCceEEEeecCCceeeEeecccccc--------------------------C
Confidence 33344 5589999999999999977 499999999999999999999988742 3
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH---Hh-c--CCCEEEeCcHHHHHHHhcCCccccc
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LK-A--RPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~~-~--~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
...|||.|..+|++.+...+.. .++....+.++.....+... +. . ..+|+..||+++...-.-. .....
T Consensus 305 gitvVISPL~SLm~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~-~~~~~ 379 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLL-ESLAD 379 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchh-hHHHh
Confidence 3799999999999987777744 37888889998887544332 22 2 5789999999985422110 11233
Q ss_pred CCC---eeEEeecchhHhhhCC--CHHH---HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc--C
Q 020452 198 LHT---LSFFVLDEADRMIENG--HFRE---LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA--L 267 (326)
Q Consensus 198 l~~---l~~lViDEah~l~~~~--~~~~---i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~--~ 267 (326)
+.. +.++|+||||+...|+ |... +..+....+ .+.+|++|||.+ -
T Consensus 380 L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~-------------------------~vP~iALTATAT~~v 434 (941)
T KOG0351|consen 380 LYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP-------------------------GVPFIALTATATERV 434 (941)
T ss_pred ccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC-------------------------CCCeEEeehhccHHH
Confidence 444 8999999999999886 4444 434444433 479999999995 3
Q ss_pred cHHHHHHhh
Q 020452 268 SADFRKKLK 276 (326)
Q Consensus 268 ~~~~~~~l~ 276 (326)
.+|+.+.|+
T Consensus 435 ~~DIi~~L~ 443 (941)
T KOG0351|consen 435 REDVIRSLG 443 (941)
T ss_pred HHHHHHHhC
Confidence 367777765
No 99
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.47 E-value=1.2e-12 Score=136.23 Aligned_cols=155 Identities=22% Similarity=0.206 Sum_probs=98.3
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC----cHHHH
Q 020452 61 QKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP----TRELA 136 (326)
Q Consensus 61 Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P----t~~L~ 136 (326)
-.+.+..+ .+++.++++|+||||||. .+|.+-.- . ..+....+++.-| +++||
T Consensus 79 r~~Il~ai-~~~~VviI~GeTGSGKTT--qlPq~lle--~------------------g~g~~g~I~~TQPRRlAArsLA 135 (1294)
T PRK11131 79 KQDILEAI-RDHQVVIVAGETGSGKTT--QLPKICLE--L------------------GRGVKGLIGHTQPRRLAARTVA 135 (1294)
T ss_pred HHHHHHHH-HhCCeEEEECCCCCCHHH--HHHHHHHH--c------------------CCCCCCceeeCCCcHHHHHHHH
Confidence 33444444 567778889999999998 46633221 0 0011113444446 56888
Q ss_pred HHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchh-HhhhC
Q 020452 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD-RMIEN 215 (326)
Q Consensus 137 ~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah-~l~~~ 215 (326)
.++++.+..-. |-.|+.-.... .+ ...+++|+|+|||+|++.+... ..++++++||||||| ++++.
T Consensus 136 ~RVA~El~~~l---G~~VGY~vrf~---~~---~s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~ 202 (1294)
T PRK11131 136 NRIAEELETEL---GGCVGYKVRFN---DQ---VSDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNI 202 (1294)
T ss_pred HHHHHHHhhhh---cceeceeecCc---cc---cCCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCcccccccc
Confidence 88888876522 22232221111 11 2346899999999999998754 448999999999999 57887
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhh
Q 020452 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276 (326)
Q Consensus 216 ~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 276 (326)
+|... .+...++.. +..|+|+||||+. .+.|.+++.
T Consensus 203 DfLLg--~Lk~lL~~r----------------------pdlKvILmSATid-~e~fs~~F~ 238 (1294)
T PRK11131 203 DFILG--YLKELLPRR----------------------PDLKVIITSATID-PERFSRHFN 238 (1294)
T ss_pred chHHH--HHHHhhhcC----------------------CCceEEEeeCCCC-HHHHHHHcC
Confidence 77543 233333311 4579999999995 567777764
No 100
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.46 E-value=1.9e-12 Score=133.46 Aligned_cols=96 Identities=27% Similarity=0.327 Sum_probs=73.5
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHH---HHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 020452 42 HPLLMKSIYRLGFKEPTPIQKACIPA---AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 118 (326)
Q Consensus 42 ~~~i~~~l~~~g~~~p~~~Q~~~i~~---~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~ 118 (326)
.+.+.+.+...|| .+++.|.+.+.. .+.+++++++.||||+|||++|++|++....
T Consensus 232 ~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-------------------- 290 (850)
T TIGR01407 232 SSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-------------------- 290 (850)
T ss_pred cHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------------------
Confidence 3467777888899 589999986653 3357899999999999999999999987653
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHH-HHHHHHcCCC--cEEEEEEcCC
Q 020452 119 APKGHLRALIITPTRELALQVTD-HLKEVAKGIN--VRVVPIVGGM 161 (326)
Q Consensus 119 ~~~~~~~~lil~Pt~~L~~Q~~~-~l~~~~~~~~--~~v~~~~g~~ 161 (326)
.+.+++|.+||++|..|+.. .+..+.+.++ ++++.+.|..
T Consensus 291 ---~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~ 333 (850)
T TIGR01407 291 ---TEKPVVISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKS 333 (850)
T ss_pred ---CCCeEEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcch
Confidence 12389999999999999865 5665554444 6666666653
No 101
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=3.9e-13 Score=134.37 Aligned_cols=133 Identities=18% Similarity=0.240 Sum_probs=105.2
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-..--.+ +.|+ |..++||.|||+++.+|++...+. +..+.|++|
T Consensus 79 lgm-~~ydVQliGgl~L-~~G~--IaEm~TGEGKTL~a~lp~~l~al~-----------------------g~~VhIvT~ 131 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVL-DSNR--IAEMRTGEGKTLTATLPAYLNALT-----------------------GKGVHVITV 131 (908)
T ss_pred hCC-CcCchHHhcchHh-cCCc--cccccCCCCchHHHHHHHHHHHhc-----------------------CCCEEEEeC
Confidence 566 7788887665443 4444 889999999999999999876643 235999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc-c--cccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK-H--LVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~-~--~~~l~~l~~lViD 207 (326)
+..||.|.++++..+...+|++|.++.++.+..... -.-.+||++|||+.| +++++.+-. . ......+.+.|+|
T Consensus 132 ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvD 209 (908)
T PRK13107 132 NDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALID 209 (908)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeec
Confidence 999999999999999999999999999988864332 223689999999999 899876511 1 1123678999999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|.++
T Consensus 210 EvDsiL 215 (908)
T PRK13107 210 EVDSIL 215 (908)
T ss_pred chhhhc
Confidence 999887
No 102
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.42 E-value=8e-12 Score=127.06 Aligned_cols=165 Identities=24% Similarity=0.305 Sum_probs=129.1
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHHHh---cC--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 40 RLHPLLMKSIYR-LGFKEPTPIQKACIPAAAH---QG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 40 ~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~---~g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
+.+......+.+ ++| .-|+=|..||..+.. ++ .|=++||.-|-|||.+++=++...+
T Consensus 578 ~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV---------------- 640 (1139)
T COG1197 578 PPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV---------------- 640 (1139)
T ss_pred CCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh----------------
Confidence 344555555544 667 669999999988742 33 4789999999999999987777665
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHh
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMS 189 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~ 189 (326)
..|.++.|+|||.-||+|-++.|++.+..++++|..+..-.+..++...+. ...|||||| ..++.
T Consensus 641 -------~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT----HrLL~ 709 (1139)
T COG1197 641 -------MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT----HRLLS 709 (1139)
T ss_pred -------cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec----hHhhC
Confidence 335699999999999999999999999999999999988888777665554 478999999 56665
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
.. ..++++.+|||||=|+.. -.-..-++.|+ .++-++-+|||.
T Consensus 710 kd----v~FkdLGLlIIDEEqRFG-----Vk~KEkLK~Lr------------------------~~VDvLTLSATP 752 (1139)
T COG1197 710 KD----VKFKDLGLLIIDEEQRFG-----VKHKEKLKELR------------------------ANVDVLTLSATP 752 (1139)
T ss_pred CC----cEEecCCeEEEechhhcC-----ccHHHHHHHHh------------------------ccCcEEEeeCCC
Confidence 44 789999999999999864 22233344444 568899999996
No 103
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.41 E-value=2.1e-12 Score=134.81 Aligned_cols=168 Identities=22% Similarity=0.221 Sum_probs=108.5
Q ss_pred CCCCCChHHHH--HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 52 LGFKEPTPIQK--ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 52 ~g~~~p~~~Q~--~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
..|...-|+.. ..|...+.+++.++++|+||||||.. +|.+-.- . ......++++.
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle--~------------------~~~~~~~I~~t 117 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLE--L------------------GRGSHGLIGHT 117 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHH--c------------------CCCCCceEecC
Confidence 45654455544 33444446777889999999999973 4543221 1 01112356677
Q ss_pred eCcHHHHHHHHHHHHHHHc-CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecc
Q 020452 130 TPTRELALQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDE 208 (326)
-|.|--|..++..+.+... ..|-.|+.-....+ + ...+..|.++|+|.|++.+... ..+.++++|||||
T Consensus 118 QPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~---~---~s~~T~I~~~TdGiLLr~l~~d----~~L~~~~~IIIDE 187 (1283)
T TIGR01967 118 QPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHD---Q---VSSNTLVKLMTDGILLAETQQD----RFLSRYDTIIIDE 187 (1283)
T ss_pred CccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCc---c---cCCCceeeeccccHHHHHhhhC----cccccCcEEEEcC
Confidence 7988878777776665532 22333333222111 1 2346789999999999988654 4588999999999
Q ss_pred hh-HhhhCCCHHH-HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 209 AD-RMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 209 ah-~l~~~~~~~~-i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
+| ++++.++... +..++... +..|+|+||||+. .+.|.+++..
T Consensus 188 aHERsL~~D~LL~lLk~il~~r-------------------------pdLKlIlmSATld-~~~fa~~F~~ 232 (1283)
T TIGR01967 188 AHERSLNIDFLLGYLKQLLPRR-------------------------PDLKIIITSATID-PERFSRHFNN 232 (1283)
T ss_pred cchhhccchhHHHHHHHHHhhC-------------------------CCCeEEEEeCCcC-HHHHHHHhcC
Confidence 99 5888777544 44444332 4579999999995 5678888753
No 104
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.41 E-value=1.6e-12 Score=130.31 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=99.4
Q ss_pred CChHHHHHHHHHHHhc---------CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEE
Q 020452 56 EPTPIQKACIPAAAHQ---------GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~---------g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (326)
-++.+|..++..++.. .+..+++.+||||||++.+..+...+ .. ...+++
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~--------------------~~~~~v 296 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL--------------------LKNPKV 296 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh--------------------cCCCeE
Confidence 3788999999776322 35789999999999998766554333 21 235689
Q ss_pred EEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh-cCCCEEEeCcHHHHHHHhcCCcccc-cCCCeeEE
Q 020452 127 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLV-ELHTLSFF 204 (326)
Q Consensus 127 lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~ll~~~~~~~~-~l~~l~~l 204 (326)
|||+|+.+|..|+.+.+..+.... ..+..+.......+. ....|+|+|.++|...+........ ...++ +|
T Consensus 297 l~lvdR~~L~~Q~~~~f~~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~-lv 369 (667)
T TIGR00348 297 FFVVDRRELDYQLMKEFQSLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEV-VV 369 (667)
T ss_pred EEEECcHHHHHHHHHHHHhhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCE-EE
Confidence 999999999999999999885311 111122333333333 2468999999999764432110001 11122 89
Q ss_pred eecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 205 VLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 205 ViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
|+||||+.....+. ..+...+| +...++||||.-
T Consensus 370 IvDEaHrs~~~~~~---~~l~~~~p-------------------------~a~~lGfTaTP~ 403 (667)
T TIGR00348 370 IFDEAHRSQYGELA---KNLKKALK-------------------------NASFFGFTGTPI 403 (667)
T ss_pred EEEcCccccchHHH---HHHHhhCC-------------------------CCcEEEEeCCCc
Confidence 99999986532222 22224454 468999999995
No 105
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.40 E-value=3.6e-12 Score=130.13 Aligned_cols=88 Identities=25% Similarity=0.417 Sum_probs=69.4
Q ss_pred HHHCCCCCChHHHHHH---HHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 020452 49 IYRLGFKEPTPIQKAC---IPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 125 (326)
Q Consensus 49 l~~~g~~~p~~~Q~~~---i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
+.-.|| .+++-|.+. +...+.++..+++.|+||+|||++|++|++... .+.+
T Consensus 239 ~~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------------------~~~~ 293 (820)
T PRK07246 239 IALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------------------DQRQ 293 (820)
T ss_pred hccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------------------CCCc
Confidence 333567 789999994 444456788999999999999999999988643 1348
Q ss_pred EEEEeCcHHHHHHH-HHHHHHHHcCCCcEEEEEEcCC
Q 020452 126 ALIITPTRELALQV-TDHLKEVAKGINVRVVPIVGGM 161 (326)
Q Consensus 126 ~lil~Pt~~L~~Q~-~~~l~~~~~~~~~~v~~~~g~~ 161 (326)
+||++||++|++|+ .+.+..+.+.+++++..+.|+.
T Consensus 294 vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~~~~~~kg~~ 330 (820)
T PRK07246 294 IIVSVPTKILQDQIMAEEVKAIQEVFHIDCHSLKGPQ 330 (820)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHhcCCcEEEEECCc
Confidence 99999999999999 5778777777777777776654
No 106
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.39 E-value=5.8e-12 Score=123.82 Aligned_cols=70 Identities=29% Similarity=0.255 Sum_probs=55.3
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHH-
Q 020452 69 AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA- 147 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~- 147 (326)
+.+++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+.
T Consensus 13 l~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---------------------~~~rvlIstpT~~Lq~Ql~~~l~~l~~ 71 (636)
T TIGR03117 13 LRQKRIGMLEASTGVGKTLAMIMAALTMLKER---------------------PDQKIAIAVPTLALMGQLWSELERLTA 71 (636)
T ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---------------------cCceEEEECCcHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999876421 13489999999999999999988887
Q ss_pred cC--CCcEEEEEEc
Q 020452 148 KG--INVRVVPIVG 159 (326)
Q Consensus 148 ~~--~~~~v~~~~g 159 (326)
+. .++++..+.|
T Consensus 72 ~~l~~~i~~~~lkG 85 (636)
T TIGR03117 72 EGLAGPVQAGFFPG 85 (636)
T ss_pred hhcCCCeeEEEEEC
Confidence 32 2445554443
No 107
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.36 E-value=8.8e-12 Score=123.63 Aligned_cols=152 Identities=22% Similarity=0.303 Sum_probs=116.2
Q ss_pred CChHHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAAAHQ---GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~---g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.+++-|+.+...+..+ .+..++.+.||||||.+|+-.|-..+.. |.++|+|+|-
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~-----------------------GkqvLvLVPE 254 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ-----------------------GKQVLVLVPE 254 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc-----------------------CCEEEEEecc
Confidence 5688999999888544 2678999999999999997666555522 4589999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecc
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDE 208 (326)
++|..|+.+.++..+ +.++..++++.+..+..+.|. ....|+|||-..+ +..|+++.++|+||
T Consensus 255 I~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl----------F~Pf~~LGLIIvDE 321 (730)
T COG1198 255 IALTPQLLARFKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL----------FLPFKNLGLIIVDE 321 (730)
T ss_pred ccchHHHHHHHHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh----------cCchhhccEEEEec
Confidence 999999999999885 478889999998877666554 4789999996655 25678999999999
Q ss_pred hhHhh---hCCC---HHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 209 ADRMI---ENGH---FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 209 ah~l~---~~~~---~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
=|.-. +.+. -.++....... .++++|+-|||.+..
T Consensus 322 EHD~sYKq~~~prYhARdvA~~Ra~~-------------------------~~~pvvLgSATPSLE 362 (730)
T COG1198 322 EHDSSYKQEDGPRYHARDVAVLRAKK-------------------------ENAPVVLGSATPSLE 362 (730)
T ss_pred cccccccCCcCCCcCHHHHHHHHHHH-------------------------hCCCEEEecCCCCHH
Confidence 99543 1111 23444444333 568999999999844
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.31 E-value=8.5e-11 Score=117.31 Aligned_cols=145 Identities=24% Similarity=0.329 Sum_probs=103.5
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.|| .|...|+.....++ .|+++-+.||||.|||...++..+... ..+.+++||+|
T Consensus 79 ~G~-~~ws~QR~WakR~~-rg~SFaiiAPTGvGKTTfg~~~sl~~a-----------------------~kgkr~yii~P 133 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLV-RGKSFAIIAPTGVGKTTFGLLMSLYLA-----------------------KKGKRVYIIVP 133 (1187)
T ss_pred hCC-CchHHHHHHHHHHH-cCCceEEEcCCCCchhHHHHHHHHHHH-----------------------hcCCeEEEEec
Confidence 566 99999998888885 899999999999999965544333322 12459999999
Q ss_pred cHHHHHHHHHHHHHHHcCCC-cEEEE-EEcCCCHHHHH----HHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEe
Q 020452 132 TRELALQVTDHLKEVAKGIN-VRVVP-IVGGMSTEKQE----RLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~-~~v~~-~~g~~~~~~~~----~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lV 205 (326)
|..|+.|+++.++++....+ ..+.. .++........ +..+.+.||+|+|...|...+..- .. -++++++
T Consensus 134 T~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L----~~-~kFdfif 208 (1187)
T COG1110 134 TTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL----SK-LKFDFIF 208 (1187)
T ss_pred CHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh----cc-cCCCEEE
Confidence 99999999999999987665 33333 55654544322 223347899999998887666432 11 3588999
Q ss_pred ecchhHhhhCCCHHHHHHHHHhC
Q 020452 206 LDEADRMIENGHFRELQSIIDML 228 (326)
Q Consensus 206 iDEah~l~~~~~~~~i~~il~~l 228 (326)
+|++|.++..+ ..+.+++..+
T Consensus 209 VDDVDA~Lkas--kNvDriL~Ll 229 (1187)
T COG1110 209 VDDVDAILKAS--KNVDRLLRLL 229 (1187)
T ss_pred EccHHHHHhcc--ccHHHHHHHc
Confidence 99999998654 3444444443
No 109
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.23 E-value=1.6e-10 Score=104.64 Aligned_cols=77 Identities=23% Similarity=0.295 Sum_probs=55.9
Q ss_pred CCCCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 52 LGFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
+.| .|+|.|.+.+..+ +.+|+++++.||||+|||++|+.|++..+...... ..+.+++|
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----------------~~~~kvi~ 66 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----------------IQKIKLIY 66 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----------------ccccceeE
Confidence 456 5699999955442 35789999999999999999999998876432110 02236888
Q ss_pred EeCcHHHHHHHHHHHHHH
Q 020452 129 ITPTRELALQVTDHLKEV 146 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~~ 146 (326)
.++|..+..|....+++.
T Consensus 67 ~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 67 LSRTVSEIEKRLEELRKL 84 (289)
T ss_pred EeccHHHHHHHHHHHHhc
Confidence 888888877776666554
No 110
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.23 E-value=1.6e-10 Score=104.64 Aligned_cols=77 Identities=23% Similarity=0.295 Sum_probs=55.9
Q ss_pred CCCCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 52 LGFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
+.| .|+|.|.+.+..+ +.+|+++++.||||+|||++|+.|++..+...... ..+.+++|
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----------------~~~~kvi~ 66 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----------------IQKIKLIY 66 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----------------ccccceeE
Confidence 456 5699999955442 35789999999999999999999998876432110 02236888
Q ss_pred EeCcHHHHHHHHHHHHHH
Q 020452 129 ITPTRELALQVTDHLKEV 146 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~~ 146 (326)
.++|..+..|....+++.
T Consensus 67 ~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 67 LSRTVSEIEKRLEELRKL 84 (289)
T ss_pred EeccHHHHHHHHHHHHhc
Confidence 888888877776666554
No 111
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=8.6e-11 Score=109.76 Aligned_cols=210 Identities=19% Similarity=0.255 Sum_probs=149.9
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCC-CchH--HHHHHHHHHHHHHHHHHhhhhhhhh--------hhhhhhhcCCCCC
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAET-GSGK--TLAFGLPIMQRLLEEREKAGKMLEE--------KGEEAEKYAPKGH 123 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apT-GsGK--T~~~~l~il~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 123 (326)
..+|+.|.+.+..+ .+.+|++..-.| +.|+ +..|++.+++++++.+....+.... +.+...+......
T Consensus 215 ~pltalQ~~L~~~m-~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 215 EPLTALQKELFKIM-FNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred CcchHHHHHHHHHH-HhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 46899999999887 588998764333 3344 6689999999999887654322211 2223334444557
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCc---------EEEEEEcC----------------------CCHH--------
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINV---------RVVPIVGG----------------------MSTE-------- 164 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~---------~v~~~~g~----------------------~~~~-------- 164 (326)
|++||+||+|+-|..+...+..++.+.+- +...=+++ ++..
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 89999999999999999999888543221 01001111 1100
Q ss_pred -HHHHHH--hcCCCEEEeCcHHHHHHHhcC---CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCC
Q 020452 165 -KQERLL--KARPELVVGTPGRLWELMSGG---EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQ 238 (326)
Q Consensus 165 -~~~~~~--~~~~~IlV~Tp~~l~~ll~~~---~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~ 238 (326)
...+.. ...+|||||.|-.|.-++.+. ......++.+.++|||.||.|+. +.++.+..++..|.......+..
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~-QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLM-QNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHH-hhHHHHHHHHHHhhcCcccccCC
Confidence 000000 126799999999977666532 22345578899999999999884 45899999999999998999999
Q ss_pred cccccccccccccCCCCceEEEEeeecc
Q 020452 239 SEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
+..+.+.|+...+.+..+|+++||+--.
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~ 480 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSH 480 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999998764
No 112
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.20 E-value=3.3e-10 Score=117.64 Aligned_cols=67 Identities=25% Similarity=0.260 Sum_probs=54.6
Q ss_pred CCCCCChHHHHHHHHH---HHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 52 LGFKEPTPIQKACIPA---AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~---~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
.|| .+++-|.+.... .+.+++.+++.||||+|||++|++|++...... +.++||
T Consensus 254 ~~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~----------------------~~~vvI 310 (928)
T PRK08074 254 PKY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK----------------------EEPVVI 310 (928)
T ss_pred CCC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc----------------------CCeEEE
Confidence 356 889999996544 346788999999999999999999998765322 348999
Q ss_pred EeCcHHHHHHHHH
Q 020452 129 ITPTRELALQVTD 141 (326)
Q Consensus 129 l~Pt~~L~~Q~~~ 141 (326)
-++|+.|.+|+..
T Consensus 311 sT~T~~LQ~Ql~~ 323 (928)
T PRK08074 311 STYTIQLQQQLLE 323 (928)
T ss_pred EcCCHHHHHHHHH
Confidence 9999999999866
No 113
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.20 E-value=4e-12 Score=128.26 Aligned_cols=156 Identities=22% Similarity=0.375 Sum_probs=122.1
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
..+|+|.++++.+.+...++++.+|+|||||+++-++++.. ....++++++|..+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~------------------------~~~~~~vyi~p~~~i 1198 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRP------------------------DTIGRAVYIAPLEEI 1198 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCC------------------------ccceEEEEecchHHH
Confidence 44899999999998888899999999999999998887761 224589999999999
Q ss_pred HHHHHHHHHHHHc-CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 136 ALQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 136 ~~Q~~~~l~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
+..+++.|..-+. ..|..+..+.|..+.+.. +....+|+|+||++ +++++ ....+++.|.||+|.+.+
T Consensus 1199 ~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~-~d~lq-------~iQ~v~l~i~d~lh~igg 1267 (1674)
T KOG0951|consen 1199 ADEQYRDWEKKFSKLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQ-WDLLQ-------SIQQVDLFIVDELHLIGG 1267 (1674)
T ss_pred HHHHHHHHHHhhccccCceEEecCCccccchH---HhhhcceEEechhH-HHHHh-------hhhhcceEeeehhhhhcc
Confidence 9999888876554 467888888888776554 33457899999999 55553 356789999999998863
Q ss_pred CCCHHH------HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHH
Q 020452 215 NGHFRE------LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271 (326)
Q Consensus 215 ~~~~~~------i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 271 (326)
.++.. +..+-.++. ++.+++.+|..++|..++
T Consensus 1268 -~~g~v~evi~S~r~ia~q~~------------------------k~ir~v~ls~~lana~d~ 1305 (1674)
T KOG0951|consen 1268 -VYGAVYEVICSMRYIASQLE------------------------KKIRVVALSSSLANARDL 1305 (1674)
T ss_pred -cCCceEEEEeeHHHHHHHHH------------------------hheeEEEeehhhccchhh
Confidence 22222 334444443 789999999999999887
No 114
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=1.4e-10 Score=116.39 Aligned_cols=133 Identities=20% Similarity=0.261 Sum_probs=103.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-..--.+ +.|+ |..+.||.|||+++.+|++-..+. |..+-+++|
T Consensus 79 lGm-~~ydVQliGg~~L-h~G~--iaEM~TGEGKTLvA~l~a~l~al~-----------------------G~~VhvvT~ 131 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTL-HEGK--IAEMRTGEGKTLVGTLAVYLNALS-----------------------GKGVHVVTV 131 (913)
T ss_pred hCC-CcchhHHHhhhHh-ccCc--cccccCCCCChHHHHHHHHHHHHc-----------------------CCCEEEEeC
Confidence 675 7888888765444 4444 789999999999999999876543 447999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lViD 207 (326)
+..||.|-++.+..++..+|++|+++.++........... ++|++||..-| .++|+.+-. .......+.+.|||
T Consensus 132 ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVD 209 (913)
T PRK13103 132 NDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVID 209 (913)
T ss_pred CHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEec
Confidence 9999999999999999999999999998887665554443 89999999876 455543310 01123778999999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|.++
T Consensus 210 EvDsiL 215 (913)
T PRK13103 210 EVDSIL 215 (913)
T ss_pred hhhhee
Confidence 999886
No 115
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.18 E-value=8.9e-11 Score=115.28 Aligned_cols=141 Identities=21% Similarity=0.234 Sum_probs=97.7
Q ss_pred CCChHHHHHHHHHHH---hcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 55 KEPTPIQKACIPAAA---HQG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l---~~g-~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
..|+.+|..||..+. ..| +.+++++.||+|||.++ +.++.++.+... ..|+|+|+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~--------------------~KRVLFLa 222 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGW--------------------VKRVLFLA 222 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcch--------------------hheeeEEe
Confidence 468999999997653 234 46899999999999998 456666655432 23899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC--cccccCCCeeEEeecc
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE--KHLVELHTLSFFVLDE 208 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~--~~~~~l~~l~~lViDE 208 (326)
-+++|+.|.+..+..+..... .+..+.+.... ..++|.|+|...+...+.... ...+....++++|+||
T Consensus 223 DR~~Lv~QA~~af~~~~P~~~-~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDE 293 (875)
T COG4096 223 DRNALVDQAYGAFEDFLPFGT-KMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDE 293 (875)
T ss_pred chHHHHHHHHHHHHHhCCCcc-ceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEech
Confidence 999999999999888866422 22222221111 147899999999988876542 2233445599999999
Q ss_pred hhHhhhCCCHHHHHHHHHhCC
Q 020452 209 ADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 209 ah~l~~~~~~~~i~~il~~l~ 229 (326)
||+-. +.....|+..+.
T Consensus 294 aHRgi----~~~~~~I~dYFd 310 (875)
T COG4096 294 AHRGI----YSEWSSILDYFD 310 (875)
T ss_pred hhhhH----HhhhHHHHHHHH
Confidence 99754 333335555543
No 116
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.16 E-value=1.1e-09 Score=97.62 Aligned_cols=145 Identities=23% Similarity=0.289 Sum_probs=105.4
Q ss_pred CChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.+++.|+.+-..++ .+.+++++.|-||+|||... ...++..++. |.++.+..|.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~~----------------------G~~vciASPR 153 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALNQ----------------------GGRVCIASPR 153 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHhc----------------------CCeEEEecCc
Confidence 68999998765542 46789999999999999875 4445544432 6689999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
...|.+++.+++..+. +..+.+++|+....-. .+++|+|...|+..-. .++++|+||+|..
T Consensus 154 vDVclEl~~Rlk~aF~--~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~----------aFD~liIDEVDAF 214 (441)
T COG4098 154 VDVCLELYPRLKQAFS--NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ----------AFDLLIIDEVDAF 214 (441)
T ss_pred ccchHHHHHHHHHhhc--cCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh----------hccEEEEeccccc
Confidence 9999999999999876 4567789988765322 6899999988765542 3689999999976
Q ss_pred hhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 213 ~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
--.. -..++..++.-. +..--+|.+|||-+
T Consensus 215 P~~~-d~~L~~Av~~ar-----------------------k~~g~~IylTATp~ 244 (441)
T COG4098 215 PFSD-DQSLQYAVKKAR-----------------------KKEGATIYLTATPT 244 (441)
T ss_pred cccC-CHHHHHHHHHhh-----------------------cccCceEEEecCCh
Confidence 5221 223333332222 14567899999998
No 117
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.14 E-value=2.6e-10 Score=115.63 Aligned_cols=169 Identities=21% Similarity=0.172 Sum_probs=108.5
Q ss_pred CChHHHHHHHHHHHh--cCC-cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAAAH--QGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~--~g~-dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
...+.|..++..+.. ... .+++.||||+|||.+.+.++...+... .....+++++.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-------------------~~~~~r~i~vlP~ 255 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-------------------IKLKSRVIYVLPF 255 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-------------------ccccceEEEEccH
Confidence 348899999987743 234 788999999999999999888776432 1235699999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH--------------HhcCCCEEEeCcHHHHHHHhcCCccc-cc
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL--------------LKARPELVVGTPGRLWELMSGGEKHL-VE 197 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~--------------~~~~~~IlV~Tp~~l~~ll~~~~~~~-~~ 197 (326)
+.+++++++.++......++.....+|.......... ...-..+.++||-............. ..
T Consensus 256 ~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (733)
T COG1203 256 RTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLA 335 (733)
T ss_pred HHHHHHHHHHHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHH
Confidence 9999999999999876554433323333322111100 00123455666655444222211111 00
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.-....+|+||+|.+.+......+..++..+.. .+..+|++|||+|
T Consensus 336 ~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~-----------------------~g~~ill~SATlP 381 (733)
T COG1203 336 LLLTSLVILDEVHLYADETMLAALLALLEALAE-----------------------AGVPVLLMSATLP 381 (733)
T ss_pred HHHhhchhhccHHhhcccchHHHHHHHHHHHHh-----------------------CCCCEEEEecCCC
Confidence 112468999999988766445556666655542 5688999999998
No 118
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=2.8e-10 Score=113.66 Aligned_cols=133 Identities=22% Similarity=0.339 Sum_probs=105.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|...--.+ ..|+ |....||+|||+++.+|++...+. |..+-+++|
T Consensus 77 ~g~-~~~dvQlig~l~l-~~G~--iaEm~TGEGKTLvA~l~a~l~al~-----------------------G~~v~vvT~ 129 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVL-HEGN--IAEMKTGEGKTLTATLPVYLNALT-----------------------GKGVHVVTV 129 (796)
T ss_pred hCC-CCchhHHHHHHHH-hcCC--cccccCCCCCcHHHHHHHHHHHHc-----------------------CCCeEEEec
Confidence 677 8999999887554 5666 899999999999999998887654 447999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lViD 207 (326)
|.-||.|-++.+..++..+|++|+++.|+.......... .+||+.||...| .++|+.+. ........+.+.|+|
T Consensus 130 neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvD 207 (796)
T PRK12906 130 NEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVD 207 (796)
T ss_pred cHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeec
Confidence 999999999999999999999999999987776554443 589999999776 45555431 011123567899999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|.++
T Consensus 208 EvDSiL 213 (796)
T PRK12906 208 EVDSIL 213 (796)
T ss_pred cchhee
Confidence 999876
No 119
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.12 E-value=4.4e-09 Score=93.25 Aligned_cols=134 Identities=23% Similarity=0.369 Sum_probs=98.6
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
..|+ .|++.|..++-.+ ..|+ ++...||-|||++..+|+.-..+. |..+=|++
T Consensus 73 ~~g~-~p~~vQll~~l~L-~~G~--laEm~TGEGKTli~~l~a~~~AL~-----------------------G~~V~vvT 125 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALAL-HKGR--LAEMKTGEGKTLIAALPAALNALQ-----------------------GKGVHVVT 125 (266)
T ss_dssp HTS-----HHHHHHHHHH-HTTS--EEEESTTSHHHHHHHHHHHHHHTT-----------------------SS-EEEEE
T ss_pred HcCC-cccHHHHhhhhhc-ccce--eEEecCCCCcHHHHHHHHHHHHHh-----------------------cCCcEEEe
Confidence 4677 8999999998665 4555 899999999999998887766532 44789999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEee
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVL 206 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lVi 206 (326)
.+..||..=++.+..++..+|+++....++.......... .++|+.+|...+ .++++.... .......++++||
T Consensus 126 ~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~iv 203 (266)
T PF07517_consen 126 SNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIV 203 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEE
T ss_pred ccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEE
Confidence 9999999999999999999999999999988865544433 368999999887 455544311 1112467899999
Q ss_pred cchhHhh
Q 020452 207 DEADRMI 213 (326)
Q Consensus 207 DEah~l~ 213 (326)
||+|.++
T Consensus 204 DEvDs~L 210 (266)
T PF07517_consen 204 DEVDSIL 210 (266)
T ss_dssp CTHHHHT
T ss_pred eccceEE
Confidence 9999887
No 120
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.12 E-value=1.4e-10 Score=92.11 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=80.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 150 (326)
.|+-.++-..+|+|||.-.+.-++...+.. +.++|||.|||.++..+++.++..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~----------------------~~rvLvL~PTRvva~em~~aL~~~---- 56 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR----------------------RLRVLVLAPTRVVAEEMYEALKGL---- 56 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT----------------------T--EEEEESSHHHHHHHHHHTTTS----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc----------------------cCeEEEecccHHHHHHHHHHHhcC----
Confidence 455668889999999988766666554433 458999999999999988887543
Q ss_pred CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCC
Q 020452 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230 (326)
Q Consensus 151 ~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~ 230 (326)
++++. ..-... ....+.-|=|.|...+...+.+. ....+.+++|+||||..-.. --.....+...-.
T Consensus 57 ~~~~~--t~~~~~-----~~~g~~~i~vMc~at~~~~~~~p----~~~~~yd~II~DEcH~~Dp~-sIA~rg~l~~~~~- 123 (148)
T PF07652_consen 57 PVRFH--TNARMR-----THFGSSIIDVMCHATYGHFLLNP----CRLKNYDVIIMDECHFTDPT-SIAARGYLRELAE- 123 (148)
T ss_dssp SEEEE--STTSS---------SSSSEEEEEHHHHHHHHHTS----SCTTS-SEEEECTTT--SHH-HHHHHHHHHHHHH-
T ss_pred CcccC--ceeeec-----cccCCCcccccccHHHHHHhcCc----ccccCccEEEEeccccCCHH-HHhhheeHHHhhh-
Confidence 43332 111111 12234567788888888777653 44678999999999975322 1122222222111
Q ss_pred CCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 231 TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
.....+|++|||.|...
T Consensus 124 ----------------------~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 124 ----------------------SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ----------------------TTS-EEEEEESS-TT--
T ss_pred ----------------------ccCeeEEEEeCCCCCCC
Confidence 03468999999999654
No 121
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.12 E-value=2.9e-10 Score=103.20 Aligned_cols=149 Identities=20% Similarity=0.197 Sum_probs=84.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 151 (326)
.+..++....|+|||...+..+. .+.... ...+...+||+||. .+..|+.+.+..++....
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~-~l~~~~-----------------~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~ 85 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALIS-YLKNEF-----------------PQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDS 85 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHH-HHHHCC-----------------TTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-T
T ss_pred CCCEEEEECCCCCchhhhhhhhh-hhhhcc-----------------ccccccceeEeecc-chhhhhhhhhcccccccc
Confidence 35789999999999988766544 222210 00111249999999 888999999999986545
Q ss_pred cEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCC
Q 020452 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231 (326)
Q Consensus 152 ~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~ 231 (326)
+++....|...............+++|+|.+.+...-.........--+.++||+||+|.+-+. .......+..+.
T Consensus 86 ~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~~~l~~l~-- 161 (299)
T PF00176_consen 86 LRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRYKALRKLR-- 161 (299)
T ss_dssp S-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHHHHHHCCC--
T ss_pred ccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccccccccccc--
Confidence 6776666665122222222346789999999987111110111122234899999999998432 223333343343
Q ss_pred CCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 232 NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
....+++|||..
T Consensus 162 -----------------------~~~~~lLSgTP~ 173 (299)
T PF00176_consen 162 -----------------------ARYRWLLSGTPI 173 (299)
T ss_dssp -----------------------ECEEEEE-SS-S
T ss_pred -----------------------cceEEeeccccc
Confidence 467788999964
No 122
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.09 E-value=7.9e-10 Score=108.63 Aligned_cols=133 Identities=19% Similarity=0.217 Sum_probs=105.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-...-.++ .|. ++...||.|||+++.+|++...+. |..+-+++|
T Consensus 75 lg~-r~ydvQlig~l~Ll-~G~--VaEM~TGEGKTLvA~l~a~l~AL~-----------------------G~~VhvvT~ 127 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLL-AGD--VIEMATGEGKTLAGAIAAAGYALQ-----------------------GRRVHVITV 127 (764)
T ss_pred cCC-CcchHHHHHHHHHh-CCC--cccccCCCCHHHHHHHHHHHHHHc-----------------------CCCeEEEcC
Confidence 677 89999999987764 554 779999999999999998877643 447999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lViD 207 (326)
+..||.|-++.+..++..+|++++++.++.......... .+||..+|..-+ .++|+.+-. .......+.+.|+|
T Consensus 128 NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVD 205 (764)
T PRK12326 128 NDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIID 205 (764)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeec
Confidence 999999999999999999999999999988766554444 589999998766 445543210 11223558899999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|.++
T Consensus 206 EvDSiL 211 (764)
T PRK12326 206 EADSVL 211 (764)
T ss_pred chhhhe
Confidence 999876
No 123
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.07 E-value=5.4e-12 Score=125.70 Aligned_cols=181 Identities=20% Similarity=0.254 Sum_probs=140.0
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
...|.|.+.+...+.-..++++-+|||+|||.+|.+.+...+.. ..+.+++|++|..+|
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~---------------------~p~~kvvyIap~kal 985 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY---------------------YPGSKVVYIAPDKAL 985 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc---------------------CCCccEEEEcCCchh
Confidence 55778888876666566789999999999999999888776532 334699999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
+..-.+.+.......|+++..+.|+...+.. -...++++|+||++.....+ .+.....+.++..+|+||.|++. .
T Consensus 986 vker~~Dw~~r~~~~g~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~R-sw~~r~~v~~v~~iv~de~hllg-~ 1060 (1230)
T KOG0952|consen 986 VKERSDDWSKRDELPGIKVIELTGDVTPDVK---AVREADIVITTPEKWDGISR-SWQTRKYVQSVSLIVLDEIHLLG-E 1060 (1230)
T ss_pred hcccccchhhhcccCCceeEeccCccCCChh---heecCceEEcccccccCccc-cccchhhhccccceeeccccccc-C
Confidence 9999999988776668999999998876522 12357999999999655544 34556778999999999999876 4
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhccc
Q 020452 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279 (326)
Q Consensus 216 ~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~ 279 (326)
+++..++.+....+. +.+......|.+++|--+.|..|+++||..+.
T Consensus 1061 ~rgPVle~ivsr~n~-----------------~s~~t~~~vr~~glsta~~na~dla~wl~~~~ 1107 (1230)
T KOG0952|consen 1061 DRGPVLEVIVSRMNY-----------------ISSQTEEPVRYLGLSTALANANDLADWLNIKD 1107 (1230)
T ss_pred CCcceEEEEeecccc-----------------CccccCcchhhhhHhhhhhccHHHHHHhCCCC
Confidence 566666666555442 22333467899999999999999999998543
No 124
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.05 E-value=1e-10 Score=108.62 Aligned_cols=142 Identities=14% Similarity=0.091 Sum_probs=101.2
Q ss_pred CCChHHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 55 KEPTPIQKACIPAAAHQGK--DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~--dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
..++|+|++++..++-+|+ +-+++.|.|+|||++-+-+++.. ..+||++|.+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti--------------------------kK~clvLcts 354 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI--------------------------KKSCLVLCTS 354 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee--------------------------cccEEEEecC
Confidence 3579999999999976664 78999999999999876655432 2279999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC-----cccccCCCeeEEeec
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-----KHLVELHTLSFFVLD 207 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~-----~~~~~l~~l~~lViD 207 (326)
---+.|+..++..+..-.+-.++.++++... ....++.|+|+|..++..-=++.. .....-..+.++++|
T Consensus 355 ~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllD 429 (776)
T KOG1123|consen 355 AVSVEQWKQQFKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLD 429 (776)
T ss_pred ccCHHHHHHHHHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEee
Confidence 9999999999988866555567777765443 233578999999877632111110 001123458999999
Q ss_pred chhHhhhCCCHHHHHHHHHh
Q 020452 208 EADRMIENGHFRELQSIIDM 227 (326)
Q Consensus 208 Eah~l~~~~~~~~i~~il~~ 227 (326)
|+|.+....|...+..+-..
T Consensus 430 EVHvvPA~MFRRVlsiv~aH 449 (776)
T KOG1123|consen 430 EVHVVPAKMFRRVLSIVQAH 449 (776)
T ss_pred hhccchHHHHHHHHHHHHHH
Confidence 99998876666666555443
No 125
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.02 E-value=5.3e-09 Score=105.59 Aligned_cols=160 Identities=21% Similarity=0.211 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHH
Q 020452 60 IQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV 139 (326)
Q Consensus 60 ~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 139 (326)
...+.+..+ .+.+-++++|+||||||...-..+++... ..+.++.+.-|.|--|..+
T Consensus 54 ~~~~i~~ai-~~~~vvii~getGsGKTTqlP~~lle~g~----------------------~~~g~I~~tQPRRlAArsv 110 (845)
T COG1643 54 VRDEILKAI-EQNQVVIIVGETGSGKTTQLPQFLLEEGL----------------------GIAGKIGCTQPRRLAARSV 110 (845)
T ss_pred HHHHHHHHH-HhCCEEEEeCCCCCChHHHHHHHHHhhhc----------------------ccCCeEEecCchHHHHHHH
Confidence 334444444 67788999999999999654333333221 2344788888999878888
Q ss_pred HHHHHHHHc-CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhH-hhhCCC
Q 020452 140 TDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MIENGH 217 (326)
Q Consensus 140 ~~~l~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~-l~~~~~ 217 (326)
++.+.+-+. ..|-.|+.-.-..+. ...+..|-+.|-|.|+..+.+. ..++.++++|+||+|. -++..+
T Consensus 111 A~RvAeel~~~~G~~VGY~iRfe~~------~s~~Trik~mTdGiLlrei~~D----~~Ls~ys~vIiDEaHERSl~tDi 180 (845)
T COG1643 111 AERVAEELGEKLGETVGYSIRFESK------VSPRTRIKVMTDGILLREIQND----PLLSGYSVVIIDEAHERSLNTDI 180 (845)
T ss_pred HHHHHHHhCCCcCceeeEEEEeecc------CCCCceeEEeccHHHHHHHhhC----cccccCCEEEEcchhhhhHHHHH
Confidence 777766543 345455544332221 1234679999999999999765 5689999999999993 333333
Q ss_pred H-HHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 218 F-RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 218 ~-~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
. ..+..++...+ ...++|++|||+- .+.|.+++..
T Consensus 181 lLgllk~~~~~rr------------------------~DLKiIimSATld-~~rfs~~f~~ 216 (845)
T COG1643 181 LLGLLKDLLARRR------------------------DDLKLIIMSATLD-AERFSAYFGN 216 (845)
T ss_pred HHHHHHHHHhhcC------------------------CCceEEEEecccC-HHHHHHHcCC
Confidence 2 23334444444 5689999999995 6788888874
No 126
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.01 E-value=4e-09 Score=108.46 Aligned_cols=131 Identities=23% Similarity=0.202 Sum_probs=84.1
Q ss_pred CChHHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~-g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
.|.|||..+...++.. ...+++.-..|.|||+-+.+.+...+... ...++|||||. .
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g---------------------~~~rvLIVvP~-s 209 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG---------------------RAERVLILVPE-T 209 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC---------------------CCCcEEEEcCH-H
Confidence 5899999998776432 34789999999999998866555544322 12379999997 7
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH--HHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER--LLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 135 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~--~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
|+.|+...+...+ ++.+..+.++........ ......+++|++.+.+...-.. .....-..++++|+||||++
T Consensus 210 L~~QW~~El~~kF---~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~--~~~l~~~~wdlvIvDEAH~l 284 (956)
T PRK04914 210 LQHQWLVEMLRRF---NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQR--LEQALAAEWDLLVVDEAHHL 284 (956)
T ss_pred HHHHHHHHHHHHh---CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHH--HHHHhhcCCCEEEEechhhh
Confidence 9999988886543 455554444332211000 1112467999998776431100 00011246899999999998
Q ss_pred h
Q 020452 213 I 213 (326)
Q Consensus 213 ~ 213 (326)
-
T Consensus 285 k 285 (956)
T PRK04914 285 V 285 (956)
T ss_pred c
Confidence 6
No 127
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.98 E-value=9.4e-09 Score=103.77 Aligned_cols=65 Identities=31% Similarity=0.346 Sum_probs=52.0
Q ss_pred CCCCChHHHHHHHHHH---Hhc-----CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCe
Q 020452 53 GFKEPTPIQKACIPAA---AHQ-----GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 124 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~---l~~-----g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
|| .+++-|.+....+ +.+ ++.+++.||||+|||++|++|++...... +-
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~----------------------~k 79 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE----------------------KK 79 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc----------------------CC
Confidence 66 7899999966554 334 36789999999999999999998765432 33
Q ss_pred EEEEEeCcHHHHHHHH
Q 020452 125 RALIITPTRELALQVT 140 (326)
Q Consensus 125 ~~lil~Pt~~L~~Q~~ 140 (326)
++||-+.|++|-+|+.
T Consensus 80 ~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 80 KLVISTATVALQEQLV 95 (697)
T ss_pred eEEEEcCCHHHHHHHH
Confidence 7999999999999975
No 128
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.96 E-value=1.9e-08 Score=103.97 Aligned_cols=144 Identities=18% Similarity=0.191 Sum_probs=95.0
Q ss_pred CChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.+.+||...+.-++ .+|.+.|+.-..|.|||+..+.. +..+...+ +....+|||||.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~-------------------~~~gp~LIVvP~ 228 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYR-------------------GITGPHMVVAPK 228 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhc-------------------CCCCCEEEEeCh
Confidence 68999999987653 36788999999999999876443 33332211 112368999996
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH---HHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecch
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER---LLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEa 209 (326)
++..++.+.+.+++. .+++..++|......... ......+|+|+|++.+...... ..--.+++||+|||
T Consensus 229 -SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~-----L~k~~W~~VIvDEA 300 (1033)
T PLN03142 229 -STLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA-----LKRFSWRYIIIDEA 300 (1033)
T ss_pred -HHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH-----hccCCCCEEEEcCc
Confidence 567889999998875 456677777543322211 1123578999999987653321 11234789999999
Q ss_pred hHhhhCCCHHHHHHHHHhCC
Q 020452 210 DRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 210 h~l~~~~~~~~i~~il~~l~ 229 (326)
|++-+. ...+...+..+.
T Consensus 301 HrIKN~--~Sklskalr~L~ 318 (1033)
T PLN03142 301 HRIKNE--NSLLSKTMRLFS 318 (1033)
T ss_pred cccCCH--HHHHHHHHHHhh
Confidence 998542 334455555554
No 129
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.95 E-value=2.7e-08 Score=100.53 Aligned_cols=168 Identities=17% Similarity=0.193 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 137 (326)
...+...+..+ ++.+-+++.|.||+|||.-.---+++..... +...++++.-|.|--|-
T Consensus 175 ~~~r~~Il~~i-~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~--------------------~~~~~IicTQPRRIsAI 233 (924)
T KOG0920|consen 175 YKMRDTILDAI-EENQVVVISGETGCGKTTQVPQFILDEAIES--------------------GAACNIICTQPRRISAI 233 (924)
T ss_pred HHHHHHHHHHH-HhCceEEEeCCCCCCchhhhhHHHHHHHHhc--------------------CCCCeEEecCCchHHHH
Confidence 56677777776 6888999999999999976555566554433 13557888889987777
Q ss_pred HHHHHHHH-HHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh-hhC
Q 020452 138 QVTDHLKE-VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM-IEN 215 (326)
Q Consensus 138 Q~~~~l~~-~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l-~~~ 215 (326)
.+++++.. .....|-.|+.-.+.... ......++.||.|.|++.+... ..+..+.++|+||+|.= .+.
T Consensus 234 svAeRVa~ER~~~~g~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~~ 303 (924)
T KOG0920|consen 234 SVAERVAKERGESLGEEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSINT 303 (924)
T ss_pred HHHHHHHHHhccccCCeeeEEEeeecc------cCCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCCc
Confidence 77776543 333345445444433222 1123579999999999999763 66889999999999943 244
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhccccc
Q 020452 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK 281 (326)
Q Consensus 216 ~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~ 281 (326)
.|.-.+.+.+-..+ +..++|+||||+- .+.|.+++...+.-
T Consensus 304 DflLi~lk~lL~~~------------------------p~LkvILMSAT~d-ae~fs~YF~~~pvi 344 (924)
T KOG0920|consen 304 DFLLILLKDLLPRN------------------------PDLKVILMSATLD-AELFSDYFGGCPVI 344 (924)
T ss_pred ccHHHHHHHHhhhC------------------------CCceEEEeeeecc-hHHHHHHhCCCceE
Confidence 44333333322222 6799999999996 77888888744333
No 130
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.91 E-value=5.2e-09 Score=104.84 Aligned_cols=133 Identities=22% Similarity=0.283 Sum_probs=101.9
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-...-.+ . +.-++.+.||.|||+++.+|+.-..+. |..|-|+++
T Consensus 73 lG~-r~ydvQlig~l~L-~--~G~IaEm~TGEGKTL~a~l~ayl~aL~-----------------------G~~VhVvT~ 125 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL-N--DGKIAEMKTGEGKTLVATLPAYLNALT-----------------------GKGVHIVTV 125 (870)
T ss_pred hCC-CCCchHhhhhHhh-c--CCccccccCCCCchHHHHHHHHHHHhc-----------------------CCceEEEeC
Confidence 677 6889998876443 3 456889999999999999998654432 346899999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lViD 207 (326)
+..||.+-++++..+...+|+.|+++.++.+........ .+||..+|..-+ .++|+..-. .......+.+.|+|
T Consensus 126 NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVD 203 (870)
T CHL00122 126 NDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIID 203 (870)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeee
Confidence 999999999999999999999999998888776554443 489999999755 355543210 11124568899999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|.++
T Consensus 204 EvDSiL 209 (870)
T CHL00122 204 EVDSIL 209 (870)
T ss_pred cchhhe
Confidence 999887
No 131
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.90 E-value=1.1e-08 Score=102.39 Aligned_cols=133 Identities=23% Similarity=0.303 Sum_probs=102.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-..--.+ +.|+ |..+.||-|||+++.+|++-..+. |..+-|+++
T Consensus 82 lG~-r~ydVQliGgl~L-h~G~--IAEM~TGEGKTL~atlpaylnAL~-----------------------GkgVhVVTv 134 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL-HEGQ--IAEMKTGEGKTLVATLPSYLNALT-----------------------GKGVHVVTV 134 (939)
T ss_pred hCC-CcchhHHHhhhhh-cCCc--eeeecCCCChhHHHHHHHHHHhhc-----------------------CCCeEEEeC
Confidence 666 7888888776444 4444 889999999999999998876543 336899999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lViD 207 (326)
+..||..=++++..+...+|++|+++.++......... -.+||++||+..| .++|+.+- ........+.+.|||
T Consensus 135 NdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVD 212 (939)
T PRK12902 135 NDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVID 212 (939)
T ss_pred CHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhcccccccccCccceEEEe
Confidence 99999999999999999999999999887766544433 3689999999887 34443221 111234678899999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|.++
T Consensus 213 EvDSIL 218 (939)
T PRK12902 213 EVDSIL 218 (939)
T ss_pred ccccee
Confidence 999876
No 132
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.83 E-value=2.8e-08 Score=93.69 Aligned_cols=147 Identities=16% Similarity=0.253 Sum_probs=110.8
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-Cc----EEEEEEc---------------CCCHHHHHHHHh-------
Q 020452 119 APKGHLRALIITPTRELALQVTDHLKEVAKGI-NV----RVVPIVG---------------GMSTEKQERLLK------- 171 (326)
Q Consensus 119 ~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~----~v~~~~g---------------~~~~~~~~~~~~------- 171 (326)
..-..|++|||+|+|..|.++.+.+.+++... .+ +...=+| +....+......
T Consensus 33 QGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~F 112 (442)
T PF06862_consen 33 QGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCF 112 (442)
T ss_pred cCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceE
Confidence 33456899999999999999999988876541 00 0000011 001111111111
Q ss_pred -----------------cCCCEEEeCcHHHHHHHhc---CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCC
Q 020452 172 -----------------ARPELVVGTPGRLWELMSG---GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231 (326)
Q Consensus 172 -----------------~~~~IlV~Tp~~l~~ll~~---~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~ 231 (326)
.++|||||+|=.|...+.. .......|+++.++|+|.||.|+ ++.++.+..+++.|+..
T Consensus 113 rlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~ 191 (442)
T PF06862_consen 113 RLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQ 191 (442)
T ss_pred EEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccC
Confidence 1679999999999888864 23345668999999999999887 56799999999999999
Q ss_pred CCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 232 NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
....+..+..+.+.|+..++++.-+|+|++|+...
T Consensus 192 P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~ 226 (442)
T PF06862_consen 192 PKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQT 226 (442)
T ss_pred CCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCC
Confidence 98999999999999999999999999999999986
No 133
>COG4889 Predicted helicase [General function prediction only]
Probab=98.74 E-value=1.7e-08 Score=99.58 Aligned_cols=149 Identities=21% Similarity=0.225 Sum_probs=97.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC----cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK----DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 109 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~----dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~ 109 (326)
-+|+.+.. .++...+.-..=.+|+|+|+.|+...+ +|- .-=+.+..|+|||++.+- |.+.+..
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~-~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~---------- 206 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAK-EGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA---------- 206 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHH-hhcccccCCcEEEecCCCccchHHH-HHHHHhh----------
Confidence 46777766 455555655555689999999999875 321 122344569999999754 4444422
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHH--------------------HH--
Q 020452 110 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEK--------------------QE-- 167 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~--------------------~~-- 167 (326)
.++|+|+|+.+|..|..+.+..-.. ++++...++++..... ..
T Consensus 207 --------------~~iL~LvPSIsLLsQTlrew~~~~~-l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~ 271 (1518)
T COG4889 207 --------------ARILFLVPSISLLSQTLREWTAQKE-LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSE 271 (1518)
T ss_pred --------------hheEeecchHHHHHHHHHHHhhccC-ccceeEEEecCccccccccccccccCCCCCcccHHHHHHH
Confidence 2899999999999999888866432 3555555555432211 00
Q ss_pred ---HHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhh
Q 020452 168 ---RLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 168 ---~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~ 213 (326)
+....+--|+.+|.+.+...-.... ..+..++++|+||||+-.
T Consensus 272 ~~~~~k~~~~~vvFsTYQSl~~i~eAQe---~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 272 MEHRQKANGLTVVFSTYQSLPRIKEAQE---AGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred HHHhhccCCcEEEEEcccchHHHHHHHH---cCCCCccEEEecchhccc
Confidence 1111244689999988866554322 557889999999999865
No 134
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.73 E-value=5.2e-08 Score=98.92 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=53.9
Q ss_pred CCCCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 52 LGFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
+.|..++|.|.+.+..+ +.+++++++.+|||+|||++.+.|++....... ..++++|
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------------------~~~kIiy 65 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------------------EVRKIIY 65 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------------------ccccEEE
Confidence 46767799999887654 357899999999999999999999998654321 1235666
Q ss_pred EeCcHHHHHHHHHHHHH
Q 020452 129 ITPTRELALQVTDHLKE 145 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~ 145 (326)
.+.|+.-..|+.+.++.
T Consensus 66 ~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 66 ASRTHSQLEQATEELRK 82 (705)
T ss_pred EcccchHHHHHHHHHHh
Confidence 66666666666666655
No 135
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.72 E-value=1.8e-07 Score=95.47 Aligned_cols=146 Identities=20% Similarity=0.272 Sum_probs=86.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHH-----HHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK-----EVA 147 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~-----~~~ 147 (326)
.++.+.++||||||.+|+-.|++.... .+..+.||+||+.+.-+.+...+. ..+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~---------------------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF 118 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK---------------------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHF 118 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH---------------------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHH
Confidence 478999999999999998877765422 234589999999998888776655 222
Q ss_pred c----CCCcEEEEEEcCC-------C-HHHHHHHHhc------CCCEEEeCcHHHHHHHh----------cCC-cccccC
Q 020452 148 K----GINVRVVPIVGGM-------S-TEKQERLLKA------RPELVVGTPGRLWELMS----------GGE-KHLVEL 198 (326)
Q Consensus 148 ~----~~~~~v~~~~g~~-------~-~~~~~~~~~~------~~~IlV~Tp~~l~~ll~----------~~~-~~~~~l 198 (326)
. ...+....+.++. . .......... ..+|+|.|-+.|..-.. .+. .....+
T Consensus 119 ~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i 198 (986)
T PRK15483 119 SQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDAL 198 (986)
T ss_pred HHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHH
Confidence 2 1223444444332 1 1111111111 47899999998854211 000 111112
Q ss_pred CCe-eEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 199 HTL-SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 199 ~~l-~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
... -.||+||.|++-.. ...+..| ..+. +.-++.+|||.+.
T Consensus 199 ~~~~PivIiDEPh~~~~~--~k~~~~i-~~ln-------------------------pl~~lrysAT~~~ 240 (986)
T PRK15483 199 AATRPVVIIDEPHRFPRD--NKFYQAI-EALK-------------------------PQMIIRFGATFPD 240 (986)
T ss_pred HhCCCEEEEECCCCCCcc--hHHHHHH-HhcC-------------------------cccEEEEeeecCC
Confidence 221 36899999998542 2234444 3333 2236779999986
No 136
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.69 E-value=1.2e-07 Score=94.67 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=95.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEE
Q 020452 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155 (326)
Q Consensus 76 lv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~ 155 (326)
+..+.+|||||..|+-.+-..+.. |.++||++|...|+.|+.+.++..+. +..+.
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~-----------------------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~ 218 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA-----------------------GRGALVVVPDQRDVDRLEAALRALLG--AGDVA 218 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc-----------------------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEE
Confidence 334446999999997766555422 44899999999999999999998754 25688
Q ss_pred EEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhh---hCCCH---HHHHHHH
Q 020452 156 PIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI---ENGHF---RELQSII 225 (326)
Q Consensus 156 ~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~---~~~~~---~~i~~il 225 (326)
.++++.+..+..+.+. ....|+|||-..+ +..+.++.+||+||=|.-. +.+.+ .++....
T Consensus 219 ~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv----------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~R 288 (665)
T PRK14873 219 VLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV----------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLR 288 (665)
T ss_pred EECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE----------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHH
Confidence 8999988776655443 3578999996554 2567889999999998443 11112 3333333
Q ss_pred HhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 226 DMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
... .+..+|+.|||.+..
T Consensus 289 a~~-------------------------~~~~lvLgSaTPSle 306 (665)
T PRK14873 289 AHQ-------------------------HGCALLIGGHARTAE 306 (665)
T ss_pred HHH-------------------------cCCcEEEECCCCCHH
Confidence 332 568999999999844
No 137
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.69 E-value=1.2e-07 Score=96.73 Aligned_cols=165 Identities=25% Similarity=0.247 Sum_probs=97.2
Q ss_pred CChHHHHHHHHHHHh-------cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 56 EPTPIQKACIPAAAH-------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~-------~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
.-..||-+|+..+.. .|--++--|.||+|||++=.=.+ ..+.. ...+.|..|
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaLsd--------------------~~~g~Rfsi 466 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YALRD--------------------DKQGARFAI 466 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHhCC--------------------CCCCceEEE
Confidence 446799999987632 12234556899999998853322 22211 134567777
Q ss_pred EeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHH-----------------------------------------
Q 020452 129 ITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE----------------------------------------- 167 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~----------------------------------------- 167 (326)
..-.|.|..|.-+.+++.+.-.+-...+++|+....+..
T Consensus 467 ALGLRTLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~ 546 (1110)
T TIGR02562 467 ALGLRSLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIE 546 (1110)
T ss_pred EccccceeccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchh
Confidence 777777777777777776543334455555543221111
Q ss_pred --HHHhc--------CCCEEEeCcHHHHHHHh--cCCccc---ccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCC
Q 020452 168 --RLLKA--------RPELVVGTPGRLWELMS--GGEKHL---VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 232 (326)
Q Consensus 168 --~~~~~--------~~~IlV~Tp~~l~~ll~--~~~~~~---~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~ 232 (326)
..+.. ...|+|||++.++-... ++.... ..+. -+.|||||+|.+-. .....+..++..+..
T Consensus 547 l~~~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La-~svlVlDEVHaYD~-~~~~~L~rlL~w~~~-- 622 (1110)
T TIGR02562 547 LLGRLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLM-SSDLILDEPDDYEP-EDLPALLRLVQLAGL-- 622 (1110)
T ss_pred hhhhhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhc-CCCEEEECCccCCH-HHHHHHHHHHHHHHH--
Confidence 00100 34699999999987652 211111 1121 25799999997643 223445555553331
Q ss_pred CCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 233 GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.+..++++|||+|
T Consensus 623 ---------------------lG~~VlLmSATLP 635 (1110)
T TIGR02562 623 ---------------------LGSRVLLSSATLP 635 (1110)
T ss_pred ---------------------cCCCEEEEeCCCC
Confidence 4588999999998
No 138
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.57 E-value=3.5e-07 Score=91.70 Aligned_cols=133 Identities=18% Similarity=0.218 Sum_probs=102.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-..--.+ +.|+ |....||-|||+++.+|++-..+. |..+-|++.
T Consensus 75 lG~-r~ydVQliGglvL-h~G~--IAEMkTGEGKTLvAtLpayLnAL~-----------------------GkgVhVVTv 127 (925)
T PRK12903 75 LGK-RPYDVQIIGGIIL-DLGS--VAEMKTGEGKTITSIAPVYLNALT-----------------------GKGVIVSTV 127 (925)
T ss_pred hCC-CcCchHHHHHHHH-hcCC--eeeecCCCCccHHHHHHHHHHHhc-----------------------CCceEEEec
Confidence 677 8899998887554 4554 789999999999999998765543 336788899
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lViD 207 (326)
+-.||..=++++..+...+|++|++...+.......... .+||..||..-| +++|+.+.. .......+.+.|+|
T Consensus 128 NdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVD 205 (925)
T PRK12903 128 NEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLID 205 (925)
T ss_pred chhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeec
Confidence 999999999999999999999999998877766554443 589999998766 556654311 11224568899999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|.++
T Consensus 206 EVDSIL 211 (925)
T PRK12903 206 EVDSIL 211 (925)
T ss_pred cchhee
Confidence 999876
No 139
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.54 E-value=1e-06 Score=85.27 Aligned_cols=162 Identities=20% Similarity=0.231 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHH
Q 020452 59 PIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 138 (326)
Q Consensus 59 ~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q 138 (326)
.+-.+.+..+ ++.+-+++.|.||||||.- +| +.+.+. ... ...++-+.-|.|--|..
T Consensus 54 ~~r~~il~~v-e~nqvlIviGeTGsGKSTQ--ip--QyL~ea----------------G~~--~~g~I~~TQPRRVAavs 110 (674)
T KOG0922|consen 54 KYRDQILYAV-EDNQVLIVIGETGSGKSTQ--IP--QYLAEA----------------GFA--SSGKIACTQPRRVAAVS 110 (674)
T ss_pred HHHHHHHHHH-HHCCEEEEEcCCCCCcccc--Hh--HHHHhc----------------ccc--cCCcEEeecCchHHHHH
Confidence 3444555555 6788899999999999943 22 222211 111 12247778899977777
Q ss_pred HHHHHHHH-HcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCC
Q 020452 139 VTDHLKEV-AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217 (326)
Q Consensus 139 ~~~~l~~~-~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~ 217 (326)
++++...- ....|-.|+....-.+.. .....|.+.|-|.|++-+-.. ..++..+++|+||||.=. -.
T Consensus 111 lA~RVAeE~~~~lG~~VGY~IRFed~t------s~~TrikymTDG~LLRE~l~D----p~LskYsvIIlDEAHERs--l~ 178 (674)
T KOG0922|consen 111 LAKRVAEEMGCQLGEEVGYTIRFEDST------SKDTRIKYMTDGMLLREILKD----PLLSKYSVIILDEAHERS--LH 178 (674)
T ss_pred HHHHHHHHhCCCcCceeeeEEEecccC------CCceeEEEecchHHHHHHhcC----CccccccEEEEechhhhh--hH
Confidence 66665443 333455555433221111 123579999999998876543 568899999999999311 01
Q ss_pred HHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 218 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 218 ~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
-+.+.-+++.+-+.. +..++|++|||+- .+.|.+++..
T Consensus 179 TDiLlGlLKki~~~R---------------------~~LklIimSATld-a~kfS~yF~~ 216 (674)
T KOG0922|consen 179 TDILLGLLKKILKKR---------------------PDLKLIIMSATLD-AEKFSEYFNN 216 (674)
T ss_pred HHHHHHHHHHHHhcC---------------------CCceEEEEeeeec-HHHHHHHhcC
Confidence 222233333322110 4579999999995 6677777654
No 140
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.51 E-value=2.3e-06 Score=89.14 Aligned_cols=141 Identities=22% Similarity=0.186 Sum_probs=94.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCc
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~ 152 (326)
+.-+|+--+|||||++.+..+-. +... ...+.++||+-.++|-.|+.+.+..+......
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~-l~~~--------------------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~ 332 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARL-LLEL--------------------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN 332 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHH-HHhc--------------------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhh
Confidence 45799999999999986543332 2211 34679999999999999999999998664322
Q ss_pred EEEEEEcCCCHHHHHHHHhcC-CCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCC
Q 020452 153 RVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231 (326)
Q Consensus 153 ~v~~~~g~~~~~~~~~~~~~~-~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~ 231 (326)
.. ...+.....+.+... ..|+|||-++|-............-+++ .+|+||||+-- ++..-..+...++
T Consensus 333 ~~----~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~i-vvI~DEaHRSQ---~G~~~~~~~~~~~-- 402 (962)
T COG0610 333 DP----KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNV-VVIIDEAHRSQ---YGELAKLLKKALK-- 402 (962)
T ss_pred cc----cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcE-EEEEechhhcc---ccHHHHHHHHHhc--
Confidence 11 344555566666644 4899999999988775531111222333 68999999753 3444444444443
Q ss_pred CCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 232 NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
+...++||.|.--
T Consensus 403 -----------------------~a~~~gFTGTPi~ 415 (962)
T COG0610 403 -----------------------KAIFIGFTGTPIF 415 (962)
T ss_pred -----------------------cceEEEeeCCccc
Confidence 4789999999853
No 141
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.50 E-value=9.4e-07 Score=76.91 Aligned_cols=74 Identities=19% Similarity=0.326 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQGKD-IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~d-vlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
++++.|.+|+..++ +... .+|.||.|||||.+..- ++..+..... ......+.++|+++|+..
T Consensus 1 ~ln~~Q~~Ai~~~~-~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~--------------~~~~~~~~~il~~~~sN~ 64 (236)
T PF13086_consen 1 KLNESQREAIQSAL-SSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK--------------SRSADRGKKILVVSPSNA 64 (236)
T ss_dssp ---HHHHHHHHHHC-TSSE-EEEE-STTSSHHHHHHH-HHHHH---------------------HCCCSS-EEEEESSHH
T ss_pred CCCHHHHHHHHHHH-cCCCCEEEECCCCCChHHHHHH-HHHHhccchh--------------hhhhhccccceeecCCch
Confidence 36889999998885 6666 89999999999965443 3333321100 001134558999999999
Q ss_pred HHHHHHHHHHH
Q 020452 135 LALQVTDHLKE 145 (326)
Q Consensus 135 L~~Q~~~~l~~ 145 (326)
-+.++.+.+.+
T Consensus 65 avd~~~~~l~~ 75 (236)
T PF13086_consen 65 AVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHHC
T ss_pred hHHHHHHHHHh
Confidence 99999999887
No 142
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.37 E-value=6.3e-06 Score=82.34 Aligned_cols=162 Identities=16% Similarity=0.112 Sum_probs=103.8
Q ss_pred CChHHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEE
Q 020452 56 EPTPIQKACIPAAAH---------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~---------~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (326)
.++|+|++.+.-+.. ...-.|+.-..|+|||+-.+.-+ ..+++.-+. ...---++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~Isfl-wtlLrq~P~---------------~~~~~~k~ 301 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFI-WTLLRQFPQ---------------AKPLINKP 301 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHH-HHHHHhCcC---------------cccccccc
Confidence 679999999866532 11234566677999998875544 444433110 00111379
Q ss_pred EEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCH-H-HHHHHHh-----cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 127 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST-E-KQERLLK-----ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 127 lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~-~-~~~~~~~-----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
|||+|. .|+.-+++++.++.....+....++|.... + .....+. -...|++.+.+.+.+.++. ....
T Consensus 302 lVV~P~-sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-----il~~ 375 (776)
T KOG0390|consen 302 LVVAPS-SLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-----ILLI 375 (776)
T ss_pred EEEccH-HHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-----HhcC
Confidence 999995 588999999999877556777778877664 1 1111111 1235778888888766643 4456
Q ss_pred CeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 200 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.+++||+||.|++-+. ...+...+..+. -.+-|++|.|+-
T Consensus 376 ~~glLVcDEGHrlkN~--~s~~~kaL~~l~-------------------------t~rRVLLSGTp~ 415 (776)
T KOG0390|consen 376 RPGLLVCDEGHRLKNS--DSLTLKALSSLK-------------------------TPRRVLLTGTPI 415 (776)
T ss_pred CCCeEEECCCCCccch--hhHHHHHHHhcC-------------------------CCceEEeeCCcc
Confidence 7899999999988543 234444555554 356677899985
No 143
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.32 E-value=9.8e-06 Score=79.59 Aligned_cols=144 Identities=21% Similarity=0.229 Sum_probs=95.9
Q ss_pred CChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.++++|.+.+.-+ ..+|-+.|+.-.-|-|||+-. +.++..+...+. ..| --||+||-
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~------------------~~G-PfLVi~P~ 226 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKG------------------IPG-PFLVIAPK 226 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcC------------------CCC-CeEEEeeH
Confidence 6889999887543 357889999999999999765 344444432211 122 35889998
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH-H--HhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecch
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER-L--LKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~-~--~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEa 209 (326)
.-|. .+.+.++++++ ++++++++|+........ . .....+|+|+|.+..+.-- ....--.++++|||||
T Consensus 227 StL~-NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk-----~~lk~~~W~ylvIDEa 298 (971)
T KOG0385|consen 227 STLD-NWMNEFKRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK-----SFLKKFNWRYLVIDEA 298 (971)
T ss_pred hhHH-HHHHHHHHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH-----HHHhcCCceEEEechh
Confidence 7765 56777888866 578888999864332211 1 1236799999999875421 1122345899999999
Q ss_pred hHhhhCCCHHHHHHHHHhCC
Q 020452 210 DRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 210 h~l~~~~~~~~i~~il~~l~ 229 (326)
|++=+. ...+..+++.+.
T Consensus 299 HRiKN~--~s~L~~~lr~f~ 316 (971)
T KOG0385|consen 299 HRIKNE--KSKLSKILREFK 316 (971)
T ss_pred hhhcch--hhHHHHHHHHhc
Confidence 999644 344556677665
No 144
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.30 E-value=7.5e-06 Score=69.95 Aligned_cols=116 Identities=18% Similarity=0.247 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~-dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
++++-|.+++..++.++. -.++.++.|+|||.+. ..+...+... +.++++++||..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~----------------------g~~v~~~apT~~ 57 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA----------------------GKRVIGLAPTNK 57 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT----------------------T--EEEEESSHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC----------------------CCeEEEECCcHH
Confidence 368899999999876554 4677899999999653 3344433221 358999999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC-cccccCCCeeEEeecchhHhh
Q 020452 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-KHLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 135 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~-~~~~~l~~l~~lViDEah~l~ 213 (326)
.+..+.+.. ++. ..|-.+++....... .....+...++|||||+-.+.
T Consensus 58 Aa~~L~~~~-------~~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~ 106 (196)
T PF13604_consen 58 AAKELREKT-------GIE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD 106 (196)
T ss_dssp HHHHHHHHH-------TS-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B
T ss_pred HHHHHHHhh-------Ccc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC
Confidence 887755541 111 123333322221110 000114556799999998654
Q ss_pred hCCCHHHHHHHHHhCC
Q 020452 214 ENGHFRELQSIIDMLP 229 (326)
Q Consensus 214 ~~~~~~~i~~il~~l~ 229 (326)
...+..++..++
T Consensus 107 ----~~~~~~ll~~~~ 118 (196)
T PF13604_consen 107 ----SRQLARLLRLAK 118 (196)
T ss_dssp ----HHHHHHHHHHS-
T ss_pred ----HHHHHHHHHHHH
Confidence 456777777776
No 145
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.27 E-value=2.2e-05 Score=73.60 Aligned_cols=190 Identities=17% Similarity=0.146 Sum_probs=104.2
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~ 110 (326)
+.++.|+..+.++.-.+.+++.-=-.....+.+.+ .++.+.+-+++++.||||||.-.--..+......
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~-~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~---------- 90 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFL-KLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH---------- 90 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHH-HHHhcCceEEEEecCCCCccccCcHHHHHHHHhh----------
Confidence 44888999999999999888743212233444444 4556889999999999999954211222222111
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc-CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHh
Q 020452 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~ 189 (326)
...+...-|.|--|.+++.+...-.. .+|-.|+....-.+.....-. +-.+|-++|++-.-
T Consensus 91 ------------~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~------Lky~tDgmLlrEam 152 (699)
T KOG0925|consen 91 ------------LTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTL------LKYCTDGMLLREAM 152 (699)
T ss_pred ------------ccceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHH------HHHhcchHHHHHHh
Confidence 12566777888888887766544321 122222111100000000000 01234444443222
Q ss_pred cCCcccccCCCeeEEeecchhHh-hhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 190 GGEKHLVELHTLSFFVLDEADRM-IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l-~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
+ ...+.+.+++|+||||.= +. -+.+.-+++..... ++...+|++|||+- .
T Consensus 153 s----~p~l~~y~viiLDeahERtlA---TDiLmGllk~v~~~---------------------rpdLk~vvmSatl~-a 203 (699)
T KOG0925|consen 153 S----DPLLGRYGVIILDEAHERTLA---TDILMGLLKEVVRN---------------------RPDLKLVVMSATLD-A 203 (699)
T ss_pred h----CcccccccEEEechhhhhhHH---HHHHHHHHHHHHhh---------------------CCCceEEEeecccc-h
Confidence 1 245788999999999932 21 12233333222211 15789999999995 4
Q ss_pred HHHHHHhhcc
Q 020452 269 ADFRKKLKHG 278 (326)
Q Consensus 269 ~~~~~~l~~~ 278 (326)
..|.+++...
T Consensus 204 ~Kfq~yf~n~ 213 (699)
T KOG0925|consen 204 EKFQRYFGNA 213 (699)
T ss_pred HHHHHHhCCC
Confidence 5566665543
No 146
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.22 E-value=1.1e-05 Score=72.14 Aligned_cols=172 Identities=19% Similarity=0.214 Sum_probs=106.4
Q ss_pred ccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 020452 37 NELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH---------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 107 (326)
Q Consensus 37 ~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~---------~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~ 107 (326)
-.+.|++.++.. | .++..|-+++-.+.+ .+.-+++--.||.||-....--|++.+++.
T Consensus 24 y~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------- 90 (303)
T PF13872_consen 24 YRLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------- 90 (303)
T ss_pred cccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------
Confidence 456777766542 2 468888888755421 134567777899999887766677766543
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHH
Q 020452 108 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~l 187 (326)
..++|++..+..|-.+..+.++.+... .+.+..+..-. .. ....-.-.||.+|...|..-
T Consensus 91 ---------------r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~-~~---~~~~~~~GvlF~TYs~L~~~ 150 (303)
T PF13872_consen 91 ---------------RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFK-YG---DIIRLKEGVLFSTYSTLISE 150 (303)
T ss_pred ---------------CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhc-cC---cCCCCCCCccchhHHHHHhH
Confidence 337999999999999999999988543 33333332210 00 00112346899998887655
Q ss_pred HhcCCcccccC---------CCeeEEeecchhHhhhCCC--------HHHHHHHHHhCCCCCCCCCCCcccccccccccc
Q 020452 188 MSGGEKHLVEL---------HTLSFFVLDEADRMIENGH--------FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250 (326)
Q Consensus 188 l~~~~~~~~~l---------~~l~~lViDEah~l~~~~~--------~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (326)
-..+......+ +.=.+|||||||.+-+... +..+..+-..||
T Consensus 151 ~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP--------------------- 209 (303)
T PF13872_consen 151 SQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP--------------------- 209 (303)
T ss_pred HhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC---------------------
Confidence 32111111111 1124799999998864422 234445555665
Q ss_pred cCCCCceEEEEeeecc
Q 020452 251 LQRKKRQTLVFSATIA 266 (326)
Q Consensus 251 ~~~~~~q~i~~SATl~ 266 (326)
+.+++.+|||-.
T Consensus 210 ----~ARvvY~SATga 221 (303)
T PF13872_consen 210 ----NARVVYASATGA 221 (303)
T ss_pred ----CCcEEEeccccc
Confidence 457999999985
No 147
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.21 E-value=3.9e-06 Score=71.68 Aligned_cols=190 Identities=16% Similarity=0.208 Sum_probs=85.6
Q ss_pred CCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 020452 54 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133 (326)
Q Consensus 54 ~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 133 (326)
+...+..|..++..++ +..-+++.||.|||||+.++..+++.+... ..-+++|+-|..
T Consensus 2 I~p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g---------------------~~~kiii~Rp~v 59 (205)
T PF02562_consen 2 IKPKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEG---------------------EYDKIIITRPPV 59 (205)
T ss_dssp ----SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTT---------------------S-SEEEEEE-S-
T ss_pred ccCCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhC---------------------CCcEEEEEecCC
Confidence 3456889999999985 777889999999999999999888887442 123788887876
Q ss_pred HHHHHHH-------HHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEee
Q 020452 134 ELALQVT-------DHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206 (326)
Q Consensus 134 ~L~~Q~~-------~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lVi 206 (326)
+..+.+- +.+..+....--....+.+... ...+.....|-+..+.. ++. ..+++ .+||+
T Consensus 60 ~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~----iRG-----rt~~~-~~iIv 125 (205)
T PF02562_consen 60 EAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEK----LEELIQNGKIEIEPLAF----IRG-----RTFDN-AFIIV 125 (205)
T ss_dssp -TT----SS---------TTTHHHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGG----GTT-------B-S-EEEEE
T ss_pred CCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHh----HHHHhhcCeEEEEehhh----hcC-----ccccc-eEEEE
Confidence 5311110 0000000000000000001111 11112233455544333 222 22443 79999
Q ss_pred cchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhcccccccccc
Q 020452 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSV 286 (326)
Q Consensus 207 DEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~ 286 (326)
|||..+. ...+..++.++. .+.++|++--.-- .|. . ..
T Consensus 126 DEaQN~t----~~~~k~ilTR~g------------------------~~skii~~GD~~Q--~D~---------~-~~-- 163 (205)
T PF02562_consen 126 DEAQNLT----PEELKMILTRIG------------------------EGSKIIITGDPSQ--IDL---------P-LD-- 163 (205)
T ss_dssp -SGGG------HHHHHHHHTTB-------------------------TT-EEEEEE------------------------
T ss_pred ecccCCC----HHHHHHHHcccC------------------------CCcEEEEecCcee--ecC---------C-CC--
Confidence 9998664 567888888887 5677777544321 111 1 00
Q ss_pred CccccHHHHHHHhCCccCcEEEecCChHHHHhhhhh
Q 020452 287 NGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEE 322 (326)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 322 (326)
....+..+.+++.-.+.+.++.++.+..+.+.|.+
T Consensus 164 -~~nGl~~~~~~~~~~~~~~~i~l~~~d~vRs~l~~ 198 (205)
T PF02562_consen 164 -YNNGLTYAIERLKGEPGIGVIELTLEDIVRSPLAK 198 (205)
T ss_dssp -----THHHHHHTTT-TTEEEEE--GGG----HHHH
T ss_pred -CCchHHHHHHHhcCCCceEEEEEeCCceECcHHHH
Confidence 11233444555544577899999776666655544
No 148
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.19 E-value=2.9e-06 Score=86.36 Aligned_cols=130 Identities=22% Similarity=0.275 Sum_probs=96.0
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+++|-..--.+ +.|+ |..+.||-|||+++.+|++-..+.. ..+=|++.+-.|
T Consensus 138 ~~ydVQLiGgivL-h~G~--IAEM~TGEGKTLvatlp~yLnAL~G-----------------------~gVHvVTvNDYL 191 (1025)
T PRK12900 138 VPYDVQLIGGIVL-HSGK--ISEMATGEGKTLVSTLPTFLNALTG-----------------------RGVHVVTVNDYL 191 (1025)
T ss_pred cccchHHhhhHHh-hcCC--ccccCCCCCcchHhHHHHHHHHHcC-----------------------CCcEEEeechHh
Confidence 5677776665343 4554 7899999999999999998776543 246777888889
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEeecchhH
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLDEADR 211 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lViDEah~ 211 (326)
|..=++++..+...+|++|+++..+......... -.|||..||..-| .++|+.+.. .......+.+.||||+|.
T Consensus 192 A~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr~a--Y~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDS 269 (1025)
T PRK12900 192 AQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQ--YLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDS 269 (1025)
T ss_pred hhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHHHh--CCCcceecCCCccccccchhccccchhhhhccCCceEEEechhh
Confidence 9999999999999999999999776666544333 3689999998666 555544311 011235688999999997
Q ss_pred hh
Q 020452 212 MI 213 (326)
Q Consensus 212 l~ 213 (326)
++
T Consensus 270 vL 271 (1025)
T PRK12900 270 VL 271 (1025)
T ss_pred hh
Confidence 76
No 149
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.18 E-value=6.4e-06 Score=83.25 Aligned_cols=75 Identities=31% Similarity=0.363 Sum_probs=60.7
Q ss_pred HHCCCCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEE
Q 020452 50 YRLGFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126 (326)
Q Consensus 50 ~~~g~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (326)
..+....|++.|.+.+..+ +.+++.+++.||||+|||++|++|++...... +.++
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~----------------------~~~v 66 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE----------------------GKKV 66 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc----------------------CCcE
Confidence 3344459999999988554 44566799999999999999999999876543 2489
Q ss_pred EEEeCcHHHHHHHHHHHHHH
Q 020452 127 LIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 127 lil~Pt~~L~~Q~~~~l~~~ 146 (326)
+|.++|+.|-.|+.+....+
T Consensus 67 iist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 67 IISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred EEECCCHHHHHHHHHhhcch
Confidence 99999999999988877664
No 150
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.15 E-value=2.2e-05 Score=76.29 Aligned_cols=163 Identities=20% Similarity=0.180 Sum_probs=94.7
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHH
Q 020452 57 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136 (326)
Q Consensus 57 p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 136 (326)
....+.+.+..+ ...+-+++.+.||||||.-.. +.++.. .+ .....+-+.-|.|.-|
T Consensus 357 vf~~R~~ll~~i-r~n~vvvivgETGSGKTTQl~----QyL~ed----------------GY--~~~GmIGcTQPRRvAA 413 (1042)
T KOG0924|consen 357 VFACRDQLLSVI-RENQVVVIVGETGSGKTTQLA----QYLYED----------------GY--ADNGMIGCTQPRRVAA 413 (1042)
T ss_pred hHHHHHHHHHHH-hhCcEEEEEecCCCCchhhhH----HHHHhc----------------cc--ccCCeeeecCchHHHH
Confidence 355666666555 567778899999999996532 223222 11 1122455566999888
Q ss_pred HHHHHHHHHHHc-CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 137 LQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 137 ~Q~~~~l~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
..+++.+..-+. .+|-.|+....-.+. -.....|=..|-|.|+.-.-. ...|.....+|+||||.=.-
T Consensus 414 iSVAkrVa~EM~~~lG~~VGYsIRFEdv------T~~~T~IkymTDGiLLrEsL~----d~~L~kYSviImDEAHERsl- 482 (1042)
T KOG0924|consen 414 ISVAKRVAEEMGVTLGDTVGYSIRFEDV------TSEDTKIKYMTDGILLRESLK----DRDLDKYSVIIMDEAHERSL- 482 (1042)
T ss_pred HHHHHHHHHHhCCccccccceEEEeeec------CCCceeEEEeccchHHHHHhh----hhhhhheeEEEechhhhccc-
Confidence 888877665432 334344332211111 011345778898888653322 14578889999999994220
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhh
Q 020452 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276 (326)
Q Consensus 216 ~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 276 (326)
.-+.+.-++...-.. .....+|+.|||+- ...|.++++
T Consensus 483 -NtDilfGllk~~lar---------------------RrdlKliVtSATm~-a~kf~nfFg 520 (1042)
T KOG0924|consen 483 -NTDILFGLLKKVLAR---------------------RRDLKLIVTSATMD-AQKFSNFFG 520 (1042)
T ss_pred -chHHHHHHHHHHHHh---------------------hccceEEEeecccc-HHHHHHHhC
Confidence 112222222211100 04678999999994 778888887
No 151
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=1.1e-05 Score=79.48 Aligned_cols=127 Identities=24% Similarity=0.263 Sum_probs=76.9
Q ss_pred CCChHHHHH------------HHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 020452 55 KEPTPIQKA------------CIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122 (326)
Q Consensus 55 ~~p~~~Q~~------------~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (326)
.+|..+|.. ....+ +..--+||||.||||||.- +| ++++...-+ . .....
T Consensus 243 ~R~~EIQ~sR~~LPI~aeEq~IMEaI-n~n~vvIIcGeTGsGKTTQ--vP--QFLYEAGf~-----------s-~~~~~- 304 (1172)
T KOG0926|consen 243 SRPAEIQESRLDLPIVAEEQRIMEAI-NENPVVIICGETGSGKTTQ--VP--QFLYEAGFA-----------S-EQSSS- 304 (1172)
T ss_pred cCcHHHHHHHhcCchhHHHHHHHHHh-hcCCeEEEecCCCCCcccc--ch--HHHHHcccC-----------C-ccCCC-
Confidence 456777753 23333 4445678899999999954 22 333322100 0 01111
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEE--EcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPI--VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~--~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
+..+=|.-|.|--|-.++++...-+..++-.|... +.++ ......|-..|-|.|+.-|.+. +.|..
T Consensus 305 ~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~t--------i~e~T~IkFMTDGVLLrEi~~D----flL~k 372 (1172)
T KOG0926|consen 305 PGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGT--------IGEDTSIKFMTDGVLLREIEND----FLLTK 372 (1172)
T ss_pred CCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEeccc--------cCCCceeEEecchHHHHHHHHh----Hhhhh
Confidence 22455677888777776666554444345444432 3222 1234679999999999888764 66888
Q ss_pred eeEEeecchhH
Q 020452 201 LSFFVLDEADR 211 (326)
Q Consensus 201 l~~lViDEah~ 211 (326)
...+|+||||.
T Consensus 373 YSvIIlDEAHE 383 (1172)
T KOG0926|consen 373 YSVIILDEAHE 383 (1172)
T ss_pred ceeEEechhhh
Confidence 99999999994
No 152
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.13 E-value=3.3e-05 Score=74.89 Aligned_cols=159 Identities=24% Similarity=0.293 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 137 (326)
+++-.+.+.++ ...+-++|.|.||||||.- +| +.+... ....++.++=+.-|.|--|.
T Consensus 267 y~ykdell~av-~e~QVLiI~GeTGSGKTTQ--iP--QyL~Ea-----------------Gytk~gk~IgcTQPRRVAAm 324 (902)
T KOG0923|consen 267 YPYKDELLKAV-KEHQVLIIVGETGSGKTTQ--IP--QYLYEA-----------------GYTKGGKKIGCTQPRRVAAM 324 (902)
T ss_pred hhhHHHHHHHH-HhCcEEEEEcCCCCCcccc--cc--HHHHhc-----------------ccccCCceEeecCcchHHHH
Confidence 45555666666 5778889999999999953 33 222221 12233445777789998888
Q ss_pred HHHHHHHH-HHcCCCcEEEEEE--cCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhH-hh
Q 020452 138 QVTDHLKE-VAKGINVRVVPIV--GGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MI 213 (326)
Q Consensus 138 Q~~~~l~~-~~~~~~~~v~~~~--g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~-l~ 213 (326)
.++.+..+ +.-.+|-.|+.-. .+... ...-|=+.|-|+|+.-+... .+|.+..++|+||||. -+
T Consensus 325 SVAaRVA~EMgvkLG~eVGYsIRFEdcTS--------ekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHERTL 392 (902)
T KOG0923|consen 325 SVAARVAEEMGVKLGHEVGYSIRFEDCTS--------EKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHERTL 392 (902)
T ss_pred HHHHHHHHHhCcccccccceEEEeccccC--------cceeeeeecchhHHHHHhcc----ccccceeEEEeehhhhhhh
Confidence 87766544 3333443333211 11111 12346688999998766443 6789999999999993 22
Q ss_pred hCC-CHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhh
Q 020452 214 ENG-HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276 (326)
Q Consensus 214 ~~~-~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 276 (326)
... .+..+..|.. .+ +...+++.|||+- .+.|..++.
T Consensus 393 ~TDILfgLvKDIar-~R------------------------pdLKllIsSAT~D-AekFS~fFD 430 (902)
T KOG0923|consen 393 HTDILFGLVKDIAR-FR------------------------PDLKLLISSATMD-AEKFSAFFD 430 (902)
T ss_pred hhhHHHHHHHHHHh-hC------------------------CcceEEeeccccC-HHHHHHhcc
Confidence 111 1222333322 22 5789999999994 677777765
No 153
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.10 E-value=4.5e-05 Score=71.69 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=97.1
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+-|+|.+.+...++.|..+++.-.-|-|||+-++. |. ..++..+ -.||+||..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA-~yyraEw----------------------plliVcPAs- 251 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IA-RYYRAEW----------------------PLLIVCPAS- 251 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HH-HHHhhcC----------------------cEEEEecHH-
Confidence 3567999999988888999999999999999987643 32 2333322 378999964
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 135 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
+-..+.+.+..++.... .+.++.++.+.... +-....|.|...+.+..+-.. ..-...+++|+||.|.+-+
T Consensus 252 vrftWa~al~r~lps~~-pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~-----l~~~~~~vvI~DEsH~Lk~ 322 (689)
T KOG1000|consen 252 VRFTWAKALNRFLPSIH-PIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDI-----LKKEKYRVVIFDESHMLKD 322 (689)
T ss_pred HhHHHHHHHHHhccccc-ceEEEecccCCccc---cccCCeEEEEEHHHHHHHHHH-----HhcccceEEEEechhhhhc
Confidence 55667778888766432 35555555443211 112246778887776443221 1123378999999998764
Q ss_pred CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 215 ~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.. -.....++..+. .-.++|++|.|.+
T Consensus 323 sk-tkr~Ka~~dllk------------------------~akhvILLSGTPa 349 (689)
T KOG1000|consen 323 SK-TKRTKAATDLLK------------------------VAKHVILLSGTPA 349 (689)
T ss_pred cc-hhhhhhhhhHHH------------------------HhhheEEecCCcc
Confidence 42 222333333333 3457888888875
No 154
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.09 E-value=4.4e-05 Score=76.52 Aligned_cols=68 Identities=22% Similarity=0.226 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++.|..++..++.+...+++.||+|||||.+..-.+.+ +... +.++++++||..-
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~-~~~~----------------------g~~VLv~a~sn~A 213 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQ-LVKR----------------------GLRVLVTAPSNIA 213 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHH-HHHc----------------------CCCEEEEcCcHHH
Confidence 5689999999988644467899999999999766444433 3221 3489999999999
Q ss_pred HHHHHHHHHHH
Q 020452 136 ALQVTDHLKEV 146 (326)
Q Consensus 136 ~~Q~~~~l~~~ 146 (326)
+.++.+.+...
T Consensus 214 vd~l~e~l~~~ 224 (637)
T TIGR00376 214 VDNLLERLALC 224 (637)
T ss_pred HHHHHHHHHhC
Confidence 99988888763
No 155
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.07 E-value=2.4e-05 Score=77.16 Aligned_cols=144 Identities=18% Similarity=0.158 Sum_probs=89.5
Q ss_pred CChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.+.++|+..+.-+ ..++.--|+--.-|-|||.-.+ ..+..+.... .-...+|||||.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~-------------------k~~~paLIVCP~ 264 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSG-------------------KLTKPALIVCPA 264 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhcc-------------------cccCceEEEccH
Confidence 4678999887543 3355667888899999996532 2222222110 001369999996
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCH---------HHHHH----HHhcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMST---------EKQER----LLKARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~---------~~~~~----~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
. ++.|+..++..++. .++|..++|.... ..... ......+|+|+|.+.+... .....-.
T Consensus 265 T-ii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~-----~d~l~~~ 336 (923)
T KOG0387|consen 265 T-IIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ-----GDDLLGI 336 (923)
T ss_pred H-HHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-----Ccccccc
Confidence 5 78899999998876 4677777776542 11111 1122567999998776322 1112234
Q ss_pred CeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 200 TLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.++++|+||.|++-+.. ..+......++
T Consensus 337 ~W~y~ILDEGH~IrNpn--s~islackki~ 364 (923)
T KOG0387|consen 337 LWDYVILDEGHRIRNPN--SKISLACKKIR 364 (923)
T ss_pred cccEEEecCcccccCCc--cHHHHHHHhcc
Confidence 57999999999997654 34444455554
No 156
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.06 E-value=2.4e-05 Score=75.84 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=65.2
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 020452 48 SIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127 (326)
Q Consensus 48 ~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (326)
.+-..|+..++.-|..|..+++ +..=.++++|+|+|||.+...-+++.+ +. +...+|
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL-~rplsLIQGPPGTGKTvtsa~IVyhl~-~~---------------------~~~~VL 458 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVL-QRPLSLIQGPPGTGKTVTSATIVYHLA-RQ---------------------HAGPVL 458 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHH-cCCceeeecCCCCCceehhHHHHHHHH-Hh---------------------cCCceE
Confidence 3344677889999999999996 667779999999999988755444443 32 244799
Q ss_pred EEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEc
Q 020452 128 IITPTRELALQVTDHLKEVAKGINVRVVPIVG 159 (326)
Q Consensus 128 il~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g 159 (326)
+.+|+.--+.|+++.+.+- |++|+.+..
T Consensus 459 vcApSNiAVDqLaeKIh~t----gLKVvRl~a 486 (935)
T KOG1802|consen 459 VCAPSNIAVDQLAEKIHKT----GLKVVRLCA 486 (935)
T ss_pred EEcccchhHHHHHHHHHhc----CceEeeeeh
Confidence 9999999999999888765 677766543
No 157
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.06 E-value=1.6e-05 Score=78.33 Aligned_cols=145 Identities=16% Similarity=0.229 Sum_probs=91.5
Q ss_pred CCCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 53 GFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
|+ .+.++|.-.+.-+ ...+-+-|+.-.-|-|||.-. ++.+..+.+.. ..| .-|||
T Consensus 397 ~i-~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g-------------------~~g-pHLVV 454 (941)
T KOG0389|consen 397 GI-QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIG-------------------NPG-PHLVV 454 (941)
T ss_pred CC-cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcC-------------------CCC-CcEEE
Confidence 44 4778888776443 345567799999999999543 44555543321 122 45889
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEe
Q 020452 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lV 205 (326)
||+..|- -+.+++.++++ .++|...+|........+... .+.+|+|+|......-- ..+.++.-.+++++|
T Consensus 455 vPsSTle-NWlrEf~kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~k--dDRsflk~~~~n~vi 529 (941)
T KOG0389|consen 455 VPSSTLE-NWLREFAKWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSK--DDRSFLKNQKFNYVI 529 (941)
T ss_pred ecchhHH-HHHHHHHHhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCCh--HHHHHHHhccccEEE
Confidence 9988764 45667777776 478888898876554443332 26799999976543110 112233345689999
Q ss_pred ecchhHhhhCC--CHHHHHHH
Q 020452 206 LDEADRMIENG--HFRELQSI 224 (326)
Q Consensus 206 iDEah~l~~~~--~~~~i~~i 224 (326)
+||+|.+=+.. ++..++.|
T Consensus 530 yDEgHmLKN~~SeRy~~LM~I 550 (941)
T KOG0389|consen 530 YDEGHMLKNRTSERYKHLMSI 550 (941)
T ss_pred ecchhhhhccchHHHHHhccc
Confidence 99999775443 34444444
No 158
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.05 E-value=7.5e-06 Score=83.58 Aligned_cols=130 Identities=20% Similarity=0.237 Sum_probs=92.9
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+++|-..--.+ +.|+ |..+.||-|||+++.+|+.-..+..+ .+-|++.+-.|
T Consensus 169 ~~yDVQliGgivL-h~G~--IAEM~TGEGKTLvAtlp~yLnAL~Gk-----------------------gVHvVTVNDYL 222 (1112)
T PRK12901 169 VHYDVQLIGGVVL-HQGK--IAEMATGEGKTLVATLPVYLNALTGN-----------------------GVHVVTVNDYL 222 (1112)
T ss_pred cccchHHhhhhhh-cCCc--eeeecCCCCchhHHHHHHHHHHHcCC-----------------------CcEEEEechhh
Confidence 4666666554333 4444 88999999999999999987765532 47778888899
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEc-CCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEeecchh
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVG-GMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLDEAD 210 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lViDEah 210 (326)
|..=++++..+...+|++|+++.. +....... ..-.|||..||..-| .++|+.+.. .......+.+.|+||+|
T Consensus 223 A~RDaewmgply~fLGLsvg~i~~~~~~~~~rr--~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvD 300 (1112)
T PRK12901 223 AKRDSEWMGPLYEFHGLSVDCIDKHQPNSEARR--KAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVD 300 (1112)
T ss_pred hhccHHHHHHHHHHhCCceeecCCCCCCHHHHH--HhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechh
Confidence 999999999999999999998866 33443332 233689999998666 455544311 11123558899999999
Q ss_pred Hhh
Q 020452 211 RMI 213 (326)
Q Consensus 211 ~l~ 213 (326)
.++
T Consensus 301 SIL 303 (1112)
T PRK12901 301 SVL 303 (1112)
T ss_pred hhh
Confidence 776
No 159
>PRK10536 hypothetical protein; Provisional
Probab=98.05 E-value=7.9e-05 Score=65.64 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=37.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHH
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLL 98 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~ 98 (326)
.++...+..|...+..+ .+...+++.||+|||||+.++...++.+.
T Consensus 55 ~~i~p~n~~Q~~~l~al-~~~~lV~i~G~aGTGKT~La~a~a~~~l~ 100 (262)
T PRK10536 55 SPILARNEAQAHYLKAI-ESKQLIFATGEAGCGKTWISAAKAAEALI 100 (262)
T ss_pred ccccCCCHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45666788999999877 46778888999999999998887776653
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.04 E-value=2e-05 Score=78.79 Aligned_cols=144 Identities=13% Similarity=0.146 Sum_probs=88.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCc
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~ 152 (326)
.=.++.||.|||||.+.+-++-+.+ . ....++++++..+.|+.+....++.. ++
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l-~---------------------~~~~~VLvVShRrSL~~sL~~rf~~~----~l 103 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDAL-K---------------------NPDKSVLVVSHRRSLTKSLAERFKKA----GL 103 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhc-c---------------------CCCCeEEEEEhHHHHHHHHHHHHhhc----CC
Confidence 3458899999999977644433322 1 12448999999999999999998765 22
Q ss_pred EEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHH------HHH-HH
Q 020452 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE------LQS-II 225 (326)
Q Consensus 153 ~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~------i~~-il 225 (326)
.-...+.+...... -....+-+++..+.|..+.. ..+++.++||+||+...+..-+... +.. +.
T Consensus 104 ~gFv~Y~d~~~~~i---~~~~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~ 174 (824)
T PF02399_consen 104 SGFVNYLDSDDYII---DGRPYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLK 174 (824)
T ss_pred Ccceeeeccccccc---cccccCeEEEEehhhhhccc------ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHH
Confidence 11112222211111 00134677778788765542 3467789999999998776533222 122 22
Q ss_pred HhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc-HHHHHHh
Q 020452 226 DMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRKKL 275 (326)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~-~~~~~~l 275 (326)
..+. ....+|++-||+... .+|.+.+
T Consensus 175 ~lI~------------------------~ak~VI~~DA~ln~~tvdFl~~~ 201 (824)
T PF02399_consen 175 ELIR------------------------NAKTVIVMDADLNDQTVDFLASC 201 (824)
T ss_pred HHHH------------------------hCCeEEEecCCCCHHHHHHHHHh
Confidence 3332 456899999999854 4565554
No 161
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.95 E-value=4.3e-05 Score=76.08 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=53.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC--
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-- 150 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-- 150 (326)
-++=|.+.||||||++|+=.|.+.- + ..+-.+-||+|||.+.-.-++...+....++
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLh-k--------------------~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k 133 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELH-K--------------------KYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFK 133 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHH-H--------------------HhCceeEEEEeccHHHHhhhHHHHHHHHHHHhh
Confidence 4788899999999999976665532 1 1345689999999987655333333222211
Q ss_pred ----CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH
Q 020452 151 ----NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184 (326)
Q Consensus 151 ----~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l 184 (326)
+.+.-.+.-+.......-...+.+.+++.|-..+
T Consensus 134 ~~Yent~~e~~i~~~~~~~~~~~~~~~~~vLl~~~~Af 171 (985)
T COG3587 134 SEYENTRLESYIYDEDIEKFKFKSNNKPCVLLIFVSAF 171 (985)
T ss_pred hhccCcceeEEeechHHHHHhhccCCCceEEEEehhhh
Confidence 2233333333222222233345677888876655
No 162
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.95 E-value=5.4e-05 Score=70.68 Aligned_cols=108 Identities=18% Similarity=0.167 Sum_probs=65.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~ 153 (326)
-++|.|..|||||+.++-.+... ... ..+.++++++++.+|...+.+.+......
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~~--------------------~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QNS--------------------EEGKKVLYLCGNHPLRNKLREQLAKKYNP---- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hcc--------------------ccCCceEEEEecchHHHHHHHHHhhhccc----
Confidence 46889999999998875443333 111 22447999999999999888877664200
Q ss_pred EEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCC-------CHHHHHHHHH
Q 020452 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG-------HFRELQSIID 226 (326)
Q Consensus 154 v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~-------~~~~i~~il~ 226 (326)
......+..+..+...+.. ........++|||||||++.+.+ ....+..++.
T Consensus 58 ------------------~~~~~~~~~~~~~i~~~~~---~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~ 116 (352)
T PF09848_consen 58 ------------------KLKKSDFRKPTSFINNYSE---SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIK 116 (352)
T ss_pred ------------------chhhhhhhhhHHHHhhccc---ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHh
Confidence 0011222334443333221 11345678999999999998732 1355656655
Q ss_pred h
Q 020452 227 M 227 (326)
Q Consensus 227 ~ 227 (326)
.
T Consensus 117 ~ 117 (352)
T PF09848_consen 117 R 117 (352)
T ss_pred c
Confidence 4
No 163
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.94 E-value=2.2e-05 Score=75.46 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+.+-|..|+..+++...-.+++||+|||||.+....|.+.+.+ +-++|+.+||..-
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----------------------~k~VLVcaPSn~A 241 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----------------------KKRVLVCAPSNVA 241 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----------------------CCeEEEEcCchHH
Confidence 67889999998886444456889999999999977666655532 3389999999999
Q ss_pred HHHHHHHHH
Q 020452 136 ALQVTDHLK 144 (326)
Q Consensus 136 ~~Q~~~~l~ 144 (326)
+.-+.+++.
T Consensus 242 VdNiverl~ 250 (649)
T KOG1803|consen 242 VDNIVERLT 250 (649)
T ss_pred HHHHHHHhc
Confidence 988888644
No 164
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.93 E-value=0.0002 Score=71.03 Aligned_cols=135 Identities=21% Similarity=0.296 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 137 (326)
.++|+.++..++ ..+-.++.|+.|||||.+. ..++..+.... ...+..++++.+||..-+.
T Consensus 147 ~~~Qk~A~~~al-~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~-----------------~~~~~~~I~l~APTGkAA~ 207 (586)
T TIGR01447 147 QNWQKVAVALAL-KSNFSLITGGPGTGKTTTV-ARLLLALVKQS-----------------PKQGKLRIALAAPTGKAAA 207 (586)
T ss_pred cHHHHHHHHHHh-hCCeEEEEcCCCCCHHHHH-HHHHHHHHHhc-----------------cccCCCcEEEECCcHHHHH
Confidence 378999998885 6788899999999999764 33333332211 0011357999999998888
Q ss_pred HHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc---cccCCCeeEEeecchhHhhh
Q 020452 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH---LVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 138 Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~---~~~l~~l~~lViDEah~l~~ 214 (326)
.+.+.+......++.. . . ......+-..|-.+++......... ..+...+++|||||+-.+ +
T Consensus 208 rL~e~~~~~~~~l~~~---------~-~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d 272 (586)
T TIGR01447 208 RLAESLRKAVKNLAAA---------E-A----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D 272 (586)
T ss_pred HHHHHHHhhhcccccc---------h-h----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C
Confidence 8777765543322210 0 0 0001112234544444332111000 112335799999999743 2
Q ss_pred CCCHHHHHHHHHhCC
Q 020452 215 NGHFRELQSIIDMLP 229 (326)
Q Consensus 215 ~~~~~~i~~il~~l~ 229 (326)
...+..+++.++
T Consensus 273 ---~~l~~~ll~al~ 284 (586)
T TIGR01447 273 ---LPLMAKLLKALP 284 (586)
T ss_pred ---HHHHHHHHHhcC
Confidence 456777788777
No 165
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.93 E-value=0.00014 Score=62.88 Aligned_cols=155 Identities=21% Similarity=0.303 Sum_probs=95.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH--QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~--~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
+|+-+..+.+++-.+. .++ -.++.|.+....++. +|.|.+.+.-.|.|||.+ ++|++..++.+.
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg----------- 69 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG----------- 69 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC-----------
Confidence 5666666666664443 355 789999999988864 367999999999999966 578887776442
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEE--EEEcCCCH--H------HHHHHHhcCCCEEEeCc
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVV--PIVGGMST--E------KQERLLKARPELVVGTP 181 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~--~~~g~~~~--~------~~~~~~~~~~~IlV~Tp 181 (326)
..-+.+++| ++|..|..+.+...+... +-++. .+.-.... . ...+.....-.|+++||
T Consensus 70 ----------~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~P 138 (229)
T PF12340_consen 70 ----------SRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATP 138 (229)
T ss_pred ----------CcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeCh
Confidence 225666666 679999999988776532 22222 22222221 1 11112223557999999
Q ss_pred HHHHHHHh-------cCCc----cc----ccCCCeeEEeecchhHhhh
Q 020452 182 GRLWELMS-------GGEK----HL----VELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 182 ~~l~~ll~-------~~~~----~~----~~l~~l~~lViDEah~l~~ 214 (326)
+.++.+.- .+.. .. ..+++...=|+||+|..+.
T Consensus 139 EhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 139 EHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 99865431 1110 00 0123344468888887765
No 166
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.92 E-value=8.7e-05 Score=74.22 Aligned_cols=95 Identities=23% Similarity=0.321 Sum_probs=57.7
Q ss_pred CCCCCChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHh--hhhhhhhh------------hhh
Q 020452 52 LGFKEPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK--AGKMLEEK------------GEE 114 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~--~~~~~~~~------------~~~ 114 (326)
+.| +|++.|...+..++ ....+.++.+|||+|||++.+-..+......+.. .+...-.. ++.
T Consensus 18 fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 445 78999998776553 4667899999999999998765544433222211 00000000 000
Q ss_pred ----hhh-cCCCCCeEEEEEeCcHHHHHHHHHHHHHHH
Q 020452 115 ----AEK-YAPKGHLRALIITPTRELALQVTDHLKEVA 147 (326)
Q Consensus 115 ----~~~-~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 147 (326)
.+. ...-+-|++.|-.-|+.-..|+.+++++..
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 001 011246788999999988888888887653
No 167
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.87 E-value=0.00024 Score=70.69 Aligned_cols=134 Identities=22% Similarity=0.302 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 137 (326)
.++|+.|+...+ ..+-.++.|++|||||.+.. .++..+.... .....++++.+||..-+.
T Consensus 154 ~d~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~------------------~~~~~~i~l~APTgkAA~ 213 (615)
T PRK10875 154 VDWQKVAAAVAL-TRRISVISGGPGTGKTTTVA-KLLAALIQLA------------------DGERCRIRLAAPTGKAAA 213 (615)
T ss_pred CHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHH-HHHHHHHHhc------------------CCCCcEEEEECCcHHHHH
Confidence 589999998875 67788999999999997642 2333332210 012357889999999888
Q ss_pred HHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCc---ccccCCCeeEEeecchhHhhh
Q 020452 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK---HLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 138 Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~---~~~~l~~l~~lViDEah~l~~ 214 (326)
.+.+.+.......++. . . .......-..|-.+++........ ...+.-..++||+||+-.+ +
T Consensus 214 rL~e~~~~~~~~~~~~---------~--~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d 278 (615)
T PRK10875 214 RLTESLGKALRQLPLT---------D--E---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D 278 (615)
T ss_pred HHHHHHHhhhhccccc---------h--h---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c
Confidence 8887776544332210 0 0 000111122344444332211100 0112334689999999743 2
Q ss_pred CCCHHHHHHHHHhCC
Q 020452 215 NGHFRELQSIIDMLP 229 (326)
Q Consensus 215 ~~~~~~i~~il~~l~ 229 (326)
...+..+++.++
T Consensus 279 ---~~lm~~ll~al~ 290 (615)
T PRK10875 279 ---LPMMARLIDALP 290 (615)
T ss_pred ---HHHHHHHHHhcc
Confidence 567777888887
No 168
>PF13245 AAA_19: Part of AAA domain
Probab=97.85 E-value=7.1e-05 Score=53.55 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=40.6
Q ss_pred HHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHH
Q 020452 64 CIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143 (326)
Q Consensus 64 ~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l 143 (326)
++...+..+.-+++.+|.|||||...+-.+...+.... .. +.++++++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~------------------~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA------------------DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc------------------CC-CCeEEEECCCHHHHHHHHHHH
Confidence 34433342334556999999999776555544442110 11 448999999999999988887
No 169
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.83 E-value=7.2e-05 Score=70.36 Aligned_cols=131 Identities=22% Similarity=0.249 Sum_probs=85.9
Q ss_pred CChHHHHHHHHHHHhcCC----cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAAHQGK----DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~----dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.+-|+|.+.+.-+..+.. .-|+.-..|.|||.-.+..++..+. +...||++|
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~------------------------ra~tLVvaP 239 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD------------------------RAPTLVVAP 239 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc------------------------cCCeeEEcc
Confidence 568899998855432222 2366778999999887665555321 225899999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCc----------ccccCCCe
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK----------HLVELHTL 201 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~----------~~~~l~~l 201 (326)
+-+|. |+...+..+..+ ..++...+|.... .....+. +.|++.+|...+....+.... ....++++
T Consensus 240 ~VAlm-QW~nEI~~~T~g-slkv~~YhG~~R~-~nikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi 315 (791)
T KOG1002|consen 240 TVALM-QWKNEIERHTSG-SLKVYIYHGAKRD-KNIKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSI 315 (791)
T ss_pred HHHHH-HHHHHHHHhccC-ceEEEEEeccccc-CCHHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhc
Confidence 99975 778888888762 4566666665433 3333333 689999999988777754211 11124444
Q ss_pred --eEEeecchhHhhh
Q 020452 202 --SFFVLDEADRMIE 214 (326)
Q Consensus 202 --~~lViDEah~l~~ 214 (326)
--+|+||||.+-+
T Consensus 316 ~~~RiIlDEAH~IK~ 330 (791)
T KOG1002|consen 316 KFYRIILDEAHNIKD 330 (791)
T ss_pred eeeeeehhhhccccc
Confidence 4589999998754
No 170
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.82 E-value=5e-05 Score=74.08 Aligned_cols=144 Identities=23% Similarity=0.216 Sum_probs=89.5
Q ss_pred CChHHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAAHQ----GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~----g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.+-|+|..++.-++.. +.--|+...-|-|||++.+..|+..-...+... ....... ..|||||
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~------------~~~~~a~-~TLII~P 391 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKARE------------KKGESAS-KTLIICP 391 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhc------------ccccccC-CeEEeCc
Confidence 5678999988665321 234577888999999877655554322211110 0111111 4999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH----HHhcCCcccccCCC--eeEEe
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE----LMSGGEKHLVELHT--LSFFV 205 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~----ll~~~~~~~~~l~~--l~~lV 205 (326)
-. |..|++..+......-.++|...+|....+-..+. ...+||+|+|+.-+.. -...+ .....+.+ +..||
T Consensus 392 aS-li~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~-L~~YDvViTTY~lva~~~~~e~~~~-~~~spL~~I~W~RVI 468 (901)
T KOG4439|consen 392 AS-LIHQWEAEVARRLEQNALSVYLYHGPNKREISAKE-LRKYDVVITTYNLVANKPDDELEEG-KNSSPLARIAWSRVI 468 (901)
T ss_pred HH-HHHHHHHHHHHHHhhcceEEEEecCCccccCCHHH-HhhcceEEEeeeccccCCchhhhcc-cCccHHHHhhHHHhh
Confidence 64 88899999988887777899989987642222222 3468999999766543 11111 11112222 46799
Q ss_pred ecchhHhhhC
Q 020452 206 LDEADRMIEN 215 (326)
Q Consensus 206 iDEah~l~~~ 215 (326)
+||||.+-+.
T Consensus 469 LDEAH~IrN~ 478 (901)
T KOG4439|consen 469 LDEAHNIRNS 478 (901)
T ss_pred hhhhhhhccc
Confidence 9999988654
No 171
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.81 E-value=0.00042 Score=70.58 Aligned_cols=67 Identities=27% Similarity=0.229 Sum_probs=47.3
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
..++ .+++-|++++..+. .++-+++.++.|||||.+. -.++..+... ++...+++++
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~-~~~~~iitGgpGTGKTt~l-~~i~~~~~~~--------------------~~~~~v~l~A 375 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAI-QHKVVILTGGPGTGKTTIT-RAIIELAEEL--------------------GGLLPVGLAA 375 (720)
T ss_pred hcCC-CCCHHHHHHHHHHH-hCCeEEEECCCCCCHHHHH-HHHHHHHHHc--------------------CCCceEEEEe
Confidence 3555 79999999999885 6778899999999999654 3344433211 1114688899
Q ss_pred CcHHHHHHHH
Q 020452 131 PTRELALQVT 140 (326)
Q Consensus 131 Pt~~L~~Q~~ 140 (326)
||..-+..+.
T Consensus 376 pTg~AA~~L~ 385 (720)
T TIGR01448 376 PTGRAAKRLG 385 (720)
T ss_pred CchHHHHHHH
Confidence 9988776443
No 172
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.66 E-value=0.00026 Score=71.52 Aligned_cols=146 Identities=15% Similarity=0.123 Sum_probs=92.7
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~ 110 (326)
+.+.+-....+.|.+.+. -+..++.-|++|+-.++....-.+|.|=+|||||.+....+ ..++..
T Consensus 648 P~f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~~---------- 712 (1100)
T KOG1805|consen 648 PKFVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVAL---------- 712 (1100)
T ss_pred chhhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHHc----------
Confidence 344444455666666664 22367899999999887666667888999999997754433 333221
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHH-----------------HHHHHHhcC
Q 020452 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE-----------------KQERLLKAR 173 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~-----------------~~~~~~~~~ 173 (326)
+.++|..+=|..-+..+.-.++.+ ++.+..+-.+.... ...+...+.
T Consensus 713 ------------gkkVLLtsyThsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~ 776 (1100)
T KOG1805|consen 713 ------------GKKVLLTSYTHSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQ 776 (1100)
T ss_pred ------------CCeEEEEehhhHHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCC
Confidence 448999998988777776666554 33333222222111 122233457
Q ss_pred CCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 174 PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 174 ~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
+.|+.||--.+.+.+ +....+++.|+|||-.+..
T Consensus 777 ~~IVa~TClgi~~pl-------f~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 777 TSIVACTCLGINHPL-------FVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred CcEEEEEccCCCchh-------hhccccCEEEEcccccccc
Confidence 889999976665544 3345589999999987653
No 173
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.65 E-value=0.00063 Score=53.62 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=13.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l 91 (326)
++++.+++.|++|+|||...--
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHH
Confidence 3567889999999999977533
No 174
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.63 E-value=0.00024 Score=72.99 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=92.3
Q ss_pred CChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.++.||...+.-+ +++.-|-|+.-..|-|||.-- +.++.++.-.+. ..|| -||+|||
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeeg------------------nWGP-HLIVVpT 674 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEG------------------NWGP-HLIVVPT 674 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhccc------------------CCCC-ceEEeec
Confidence 3577888877553 445558899999999999654 555665543322 2233 4888999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH-HHh--cCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecch
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER-LLK--ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~-~~~--~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEa 209 (326)
.-+.+ +.=.|++++. ++++...+|........+ .|. +-.||+|+.+..+..-+.. +.-.+++++|+|||
T Consensus 675 sviLn-WEMElKRwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A-----FkrkrWqyLvLDEa 746 (1958)
T KOG0391|consen 675 SVILN-WEMELKRWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA-----FKRKRWQYLVLDEA 746 (1958)
T ss_pred hhhhh-hhHHHhhhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-----HHhhccceeehhhh
Confidence 87654 4556777766 678888888754433322 122 2458999998777654432 33467899999999
Q ss_pred hHhhhCCCHHHHHHHHH
Q 020452 210 DRMIENGHFRELQSIID 226 (326)
Q Consensus 210 h~l~~~~~~~~i~~il~ 226 (326)
|.+-++ ....++.++.
T Consensus 747 qnIKnf-ksqrWQAlln 762 (1958)
T KOG0391|consen 747 QNIKNF-KSQRWQALLN 762 (1958)
T ss_pred hhhcch-hHHHHHHHhc
Confidence 998643 2445555553
No 175
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.57 E-value=0.0007 Score=70.00 Aligned_cols=150 Identities=17% Similarity=0.150 Sum_probs=97.5
Q ss_pred CChHHHHHHHHHH--Hhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAA--AHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~--l~~-g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.++.||++.+.-+ ++. +=+-|+|-.-|-|||+-.+--+..-.+..+. ........-.||+||.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s--------------~~~e~~~~PSLIVCPs 1040 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRS--------------ESSEFNRLPSLIVCPS 1040 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcc--------------cchhhccCCeEEECCc
Confidence 4577888886443 322 2377999999999998764444333333211 1111222338999996
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
.|+--+..++.+|+.. ++|...+|+-......+...++.+|+|+.++.+..-+.. ..-.++.|.|+||-|-|
T Consensus 1041 -TLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~-----l~~~~wNYcVLDEGHVi 1112 (1549)
T KOG0392|consen 1041 -TLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY-----LIKIDWNYCVLDEGHVI 1112 (1549)
T ss_pred -hhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH-----HHhcccceEEecCccee
Confidence 4888899999999876 566667777666666666666789999998887522210 11134679999999977
Q ss_pred hhCCCHHHHHHHHHhCC
Q 020452 213 IENGHFRELQSIIDMLP 229 (326)
Q Consensus 213 ~~~~~~~~i~~il~~l~ 229 (326)
-+ -...+....+.+.
T Consensus 1113 kN--~ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1113 KN--SKTKLTKAVKQLR 1127 (1549)
T ss_pred cc--hHHHHHHHHHHHh
Confidence 53 2455666666665
No 176
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.55 E-value=0.00023 Score=62.67 Aligned_cols=88 Identities=30% Similarity=0.445 Sum_probs=67.6
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CHHHHHHHHh-cCCCEEEeCcHHHHHHHhcCCcccc
Q 020452 119 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGM-STEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLV 196 (326)
Q Consensus 119 ~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~-~~~~~~~~~~-~~~~IlV~Tp~~l~~ll~~~~~~~~ 196 (326)
...+.|.+|||+.+---|-.+.+.++.+-.. +..|+-++... ...++...+. ...+|.||||+|+..++.++. .
T Consensus 122 ~~~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~---L 197 (252)
T PF14617_consen 122 KEKGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGA---L 197 (252)
T ss_pred cCCCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCC---C
Confidence 3467889999999988888888888877321 23444444443 6667777776 478999999999999998764 7
Q ss_pred cCCCeeEEeecchh
Q 020452 197 ELHTLSFFVLDEAD 210 (326)
Q Consensus 197 ~l~~l~~lViDEah 210 (326)
.++++.+||||--|
T Consensus 198 ~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 198 SLSNLKRIVLDWSY 211 (252)
T ss_pred CcccCeEEEEcCCc
Confidence 78999999999755
No 177
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.51 E-value=3.7e-05 Score=73.39 Aligned_cols=192 Identities=8% Similarity=-0.064 Sum_probs=127.9
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 020452 43 PLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122 (326)
Q Consensus 43 ~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (326)
+.+...++++--.....+|..++..+ .+|+++++...|.+||.++|.+..........
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~-~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~--------------------- 330 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFA-SEGRADGGNEARQAGKGTCPTSGSRKFQTLCH--------------------- 330 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhh-hhcccccccchhhcCCccCcccchhhhhhcCc---------------------
Confidence 44555566666677889999999888 79999999999999999999888777654332
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcC---CCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH-hcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKG---INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM-SGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~---~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll-~~~~~~~~~l 198 (326)
....+++.|+.++++...+.+.-.... ..-.++-.+.+..........+.+..++.+.|..+...+ .+.--+...+
T Consensus 331 ~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~ 410 (1034)
T KOG4150|consen 331 ATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPV 410 (1034)
T ss_pred ccceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHH
Confidence 235788889999887654433222111 112344455555555555666678899999998876543 2222233445
Q ss_pred CCeeEEeecchhHhhhCCCHHH----HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHH
Q 020452 199 HTLSFFVLDEADRMIENGHFRE----LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~----i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 274 (326)
-...++++||+|.... -+... +.++++.+. |+.. ..+.|++-.|||+.+....++.
T Consensus 411 ~~~~~~~~~~~~~Y~~-~~~~~~~~~~R~L~~L~~---------------~F~~----~~~~~~~~~~~~~K~~~~~~~~ 470 (1034)
T KOG4150|consen 411 FEELCKDTNSCALYLF-PTKALAQDQLRALSDLIK---------------GFEA----SINMGVYDGDTPYKDRTRLRSE 470 (1034)
T ss_pred HHHHHhcccceeeeec-chhhHHHHHHHHHHHHHH---------------HHHh----hcCcceEeCCCCcCCHHHHHHH
Confidence 5567899999997653 23333 333333332 2222 1568999999999988888777
Q ss_pred hh
Q 020452 275 LK 276 (326)
Q Consensus 275 l~ 276 (326)
+.
T Consensus 471 ~~ 472 (1034)
T KOG4150|consen 471 LA 472 (1034)
T ss_pred hc
Confidence 64
No 178
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.47 E-value=0.00038 Score=70.24 Aligned_cols=133 Identities=23% Similarity=0.270 Sum_probs=96.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|..+|...--.+ ...-+..+.||-|||+++.+|+.-..+. +-.+.+++-
T Consensus 77 lg~-~~~dVQliG~i~l---h~g~iaEM~TGEGKTL~atlp~ylnaL~-----------------------gkgVhvVTv 129 (822)
T COG0653 77 LGM-RHFDVQLLGGIVL---HLGDIAEMRTGEGKTLVATLPAYLNALA-----------------------GKGVHVVTV 129 (822)
T ss_pred cCC-ChhhHHHhhhhhh---cCCceeeeecCCchHHHHHHHHHHHhcC-----------------------CCCcEEeee
Confidence 455 5666666554222 3445789999999999999998765543 225788888
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lViD 207 (326)
.-.||.--.+++..+...+|+.+++...+.......... .|||..+|-..| .++++.+. ..-.....+.+-|+|
T Consensus 130 NdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvD 207 (822)
T COG0653 130 NDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVD 207 (822)
T ss_pred hHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEc
Confidence 999999999999999999999999999998776665554 489999998777 34443221 011223457889999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|-++
T Consensus 208 EvDSIL 213 (822)
T COG0653 208 EVDSIL 213 (822)
T ss_pred chhhee
Confidence 999765
No 179
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.46 E-value=0.0016 Score=67.89 Aligned_cols=65 Identities=11% Similarity=-0.046 Sum_probs=45.6
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
..|+ .+++-|..++..++..+.-+++.++.|+|||.+ +-.+...+ .. .+.+++.++
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~-e~---------------------~G~~V~~~A 397 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAW-EA---------------------AGYEVRGAA 397 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHH-HH---------------------cCCeEEEec
Confidence 3565 799999999998863334468899999999976 33333333 21 145899999
Q ss_pred CcHHHHHHH
Q 020452 131 PTRELALQV 139 (326)
Q Consensus 131 Pt~~L~~Q~ 139 (326)
||---+..+
T Consensus 398 pTGkAA~~L 406 (988)
T PRK13889 398 LSGIAAENL 406 (988)
T ss_pred CcHHHHHHH
Confidence 998766443
No 180
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.45 E-value=0.00014 Score=69.41 Aligned_cols=106 Identities=22% Similarity=0.184 Sum_probs=72.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEE
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v 154 (326)
++-+|||.||||.-+ ++++...+ .++|--|.|-||.++++.+.+. |+.+
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~ak-----------------------sGvycGPLrLLA~EV~~r~na~----gipC 242 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKSAK-----------------------SGVYCGPLRLLAHEVYDRLNAL----GIPC 242 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhhhc-----------------------cceecchHHHHHHHHHHHhhhc----CCCc
Confidence 455899999999654 45553322 6899999999999999999887 7888
Q ss_pred EEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHH
Q 020452 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224 (326)
Q Consensus 155 ~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~i 224 (326)
-+++|......... .+.++.+=||-+++. --...++.|+||+..|-+..++..+.+.
T Consensus 243 dL~TGeE~~~~~~~--~~~a~hvScTVEM~s-----------v~~~yeVAViDEIQmm~Dp~RGwAWTrA 299 (700)
T KOG0953|consen 243 DLLTGEERRFVLDN--GNPAQHVSCTVEMVS-----------VNTPYEVAVIDEIQMMRDPSRGWAWTRA 299 (700)
T ss_pred cccccceeeecCCC--CCcccceEEEEEEee-----------cCCceEEEEehhHHhhcCcccchHHHHH
Confidence 88887643322211 123567777866641 1123678899999988877765554443
No 181
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.44 E-value=0.00049 Score=62.63 Aligned_cols=102 Identities=22% Similarity=0.188 Sum_probs=65.7
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHH
Q 020452 57 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136 (326)
Q Consensus 57 p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 136 (326)
+++-|.+++.. ..++++|.|+.|||||.+.+--+...+.... ...-++|++++|+..+
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-------------------~~~~~Il~lTft~~aa 58 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-------------------VPPERILVLTFTNAAA 58 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-------------------STGGGEEEEESSHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-------------------CChHHheecccCHHHH
Confidence 46788888854 4789999999999999987666665553221 2234799999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH
Q 020452 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 186 (326)
Q Consensus 137 ~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ 186 (326)
.++.+++...+...... ................+-|+|-..+..
T Consensus 59 ~e~~~ri~~~l~~~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~ 102 (315)
T PF00580_consen 59 QEMRERIRELLEEEQQE------SSDNERLRRQLSNIDRIYISTFHSFCY 102 (315)
T ss_dssp HHHHHHHHHHHHHCCHC------CTT-HHHHHHHHHCTTSEEEEHHHHHH
T ss_pred HHHHHHHHHhcCccccc------ccccccccccccccchheeehhhhhhh
Confidence 99999999876543210 000111222222345678888877754
No 182
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.40 E-value=0.003 Score=64.71 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=45.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.++ .+++-|+.++..++.+++-+++.++.|+|||... -.+...+ .. .+.++++++|
T Consensus 349 ~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~-~~---------------------~g~~V~~~Ap 404 (744)
T TIGR02768 349 QHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAW-EA---------------------AGYRVIGAAL 404 (744)
T ss_pred ccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHH-Hh---------------------CCCeEEEEeC
Confidence 344 6899999999988644566789999999999664 2333333 11 1457999999
Q ss_pred cHHHHHHHH
Q 020452 132 TRELALQVT 140 (326)
Q Consensus 132 t~~L~~Q~~ 140 (326)
|---+..+.
T Consensus 405 Tg~Aa~~L~ 413 (744)
T TIGR02768 405 SGKAAEGLQ 413 (744)
T ss_pred cHHHHHHHH
Confidence 987665443
No 183
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.37 E-value=0.00032 Score=65.79 Aligned_cols=122 Identities=11% Similarity=0.211 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHH-----hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 57 PTPIQKACIPAAA-----HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 57 p~~~Q~~~i~~~l-----~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+++-|+.++..++ ..+.++.+.|+-|+|||+.+- .+...+ +. .+..+++++|
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~-~~---------------------~~~~~~~~a~ 58 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYL-RS---------------------RGKKVLVTAP 58 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHh-cc---------------------ccceEEEecc
Confidence 5677888876652 367789999999999996642 222222 21 2347899999
Q ss_pred cHHHHHHH--HHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecch
Q 020452 132 TRELALQV--TDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 132 t~~L~~Q~--~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEa 209 (326)
|-.-|..+ -..+..++ ++.+. . . ....+ .+.+- ......+..+++||+||+
T Consensus 59 tg~AA~~i~~G~T~hs~f---~i~~~----~-~----------~~~~~--~~~~~-------~~~~~~l~~~~~lIiDEi 111 (364)
T PF05970_consen 59 TGIAAFNIPGGRTIHSFF---GIPIN----N-N----------EKSQC--KISKN-------SRLRERLRKADVLIIDEI 111 (364)
T ss_pred hHHHHHhccCCcchHHhc---Ccccc----c-c----------ccccc--ccccc-------chhhhhhhhheeeecccc
Confidence 98765544 22222221 11110 0 0 00000 11111 111244678899999999
Q ss_pred hHhhhCCCHHHHHHHHHhCC
Q 020452 210 DRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 210 h~l~~~~~~~~i~~il~~l~ 229 (326)
-.+. ......+...++.+.
T Consensus 112 sm~~-~~~l~~i~~~lr~i~ 130 (364)
T PF05970_consen 112 SMVS-ADMLDAIDRRLRDIR 130 (364)
T ss_pred cchh-HHHHHHHHHhhhhhh
Confidence 8554 344556666666555
No 184
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.00082 Score=64.13 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=53.8
Q ss_pred CChHHHHHHHHHHHh---cC-CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAAH---QG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~---~g-~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.|..=|-+||..+.. +| +.-.+-|.||||||++..- ++..+ ..-+||++|
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~An-VI~~~-------------------------~rPtLV~Ah 65 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMAN-VIAKV-------------------------QRPTLVLAH 65 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHH-HHHHh-------------------------CCCeEEEec
Confidence 677778888877632 23 4678899999999988633 33333 224899999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcE
Q 020452 132 TRELALQVTDHLKEVAKGINVR 153 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~ 153 (326)
++.||.|.+..++.++..-.+.
T Consensus 66 NKTLAaQLy~Efk~fFP~NaVE 87 (663)
T COG0556 66 NKTLAAQLYSEFKEFFPENAVE 87 (663)
T ss_pred chhHHHHHHHHHHHhCcCcceE
Confidence 9999999999999998764443
No 185
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0029 Score=59.59 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=16.5
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
+.+++.||||+|||.+..-.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA 195 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467889999999998864433
No 186
>PRK08181 transposase; Validated
Probab=97.20 E-value=0.0026 Score=56.96 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=24.6
Q ss_pred hHHHHHHHH---HHHhcCCcEEEEcCCCchHHHHHHH
Q 020452 58 TPIQKACIP---AAAHQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 58 ~~~Q~~~i~---~~l~~g~dvlv~apTGsGKT~~~~l 91 (326)
...|..++. .++..++++++.||+|+|||..+..
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA 125 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH
Confidence 455555553 2345788999999999999976544
No 187
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.20 E-value=0.002 Score=58.97 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=40.3
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHHHHH
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKD-IIGAAETGSGKTLAFGLPIMQRLLEER 101 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~d-vlv~apTGsGKT~~~~l~il~~~~~~~ 101 (326)
-.|+..-+..|..|+..++...-+ |.+.++.|||||+.++.+.++.....+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~ 274 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK 274 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh
Confidence 368877788999999988644434 466899999999999998888876653
No 188
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.19 E-value=0.009 Score=63.02 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcC
Q 020452 40 RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 119 (326)
Q Consensus 40 ~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (326)
++++..+......++ .+++-|..++..+...++-.++.|+.|+|||.+. -++...+. .
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e-~------------------- 423 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWE-A------------------- 423 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHH-H-------------------
Confidence 455666655555555 7999999999887544566788999999999654 33433331 1
Q ss_pred CCCCeEEEEEeCcHHHHHHH
Q 020452 120 PKGHLRALIITPTRELALQV 139 (326)
Q Consensus 120 ~~~~~~~lil~Pt~~L~~Q~ 139 (326)
.+.+++.++||-.-+..+
T Consensus 424 --~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 424 --AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred --cCCeEEEEcCcHHHHHHH
Confidence 245899999998766554
No 189
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.13 E-value=0.01 Score=46.82 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
+..+++.||+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999544
No 190
>PRK06526 transposase; Provisional
Probab=97.03 E-value=0.0021 Score=57.19 Aligned_cols=25 Identities=16% Similarity=0.006 Sum_probs=20.2
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHH
Q 020452 69 AHQGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~~l~i 93 (326)
+..++++++.||+|+|||..+....
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~ 119 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLG 119 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHH
Confidence 3567899999999999998765433
No 191
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=96.97 E-value=0.0056 Score=63.67 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=87.9
Q ss_pred CCChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 55 KEPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
..++.+|-+.+.-++ .++.++|+.-.-|-|||.-- +..+..+..... ..|| .||++|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~------------------~~gp-flvvvp 428 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQ------------------IHGP-FLVVVP 428 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhh------------------ccCC-eEEEee
Confidence 578899988775543 26789999999999999653 223333332211 1232 577778
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----c-----CCCEEEeCcHHHHHHHhcCCcccccCCCee
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----A-----RPELVVGTPGRLWELMSGGEKHLVELHTLS 202 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~-----~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~ 202 (326)
...+. .+.+.+... .++++++.+|........+... . ..+++++|.+.++.=-. ...--...
T Consensus 429 lst~~-~W~~ef~~w---~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~-----~L~~i~w~ 499 (1373)
T KOG0384|consen 429 LSTIT-AWEREFETW---TDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA-----ELSKIPWR 499 (1373)
T ss_pred hhhhH-HHHHHHHHH---hhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh-----hhccCCcc
Confidence 66543 344445444 3678888998876554433221 1 47899999988743211 11122367
Q ss_pred EEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 203 FFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 203 ~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
++++||||++-+. ...+...+..+.
T Consensus 500 ~~~vDeahrLkN~--~~~l~~~l~~f~ 524 (1373)
T KOG0384|consen 500 YLLVDEAHRLKND--ESKLYESLNQFK 524 (1373)
T ss_pred eeeecHHhhcCch--HHHHHHHHHHhc
Confidence 8999999998632 334444455554
No 192
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.92 E-value=0.024 Score=45.86 Aligned_cols=18 Identities=39% Similarity=0.218 Sum_probs=14.4
Q ss_pred EEEEcCCCchHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~ 92 (326)
+++.|++|+|||......
T Consensus 2 ~~i~G~~G~GKT~l~~~i 19 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL 19 (165)
T ss_pred eeEeCCCCCCHHHHHHHH
Confidence 578999999999765443
No 193
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.85 E-value=0.0062 Score=61.69 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=53.4
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+++-|++++- ....+++|.|..|||||.+.+.-+...+.... ..+-++++++.|+.
T Consensus 195 ~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-------------------~~~~~IL~ltft~~ 252 (684)
T PRK11054 195 SPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQ-------------------AQPEQILLLAFGRQ 252 (684)
T ss_pred CCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-------------------CCHHHeEEEeccHH
Confidence 478999999983 34567899999999999887555444332210 11337999999999
Q ss_pred HHHHHHHHHHHHHc
Q 020452 135 LALQVTDHLKEVAK 148 (326)
Q Consensus 135 L~~Q~~~~l~~~~~ 148 (326)
.|..+.+++.....
T Consensus 253 AA~em~eRL~~~lg 266 (684)
T PRK11054 253 AAEEMDERIRERLG 266 (684)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998887654
No 194
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.85 E-value=0.0032 Score=56.29 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=38.4
Q ss_pred ccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHH
Q 020452 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100 (326)
Q Consensus 29 ~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~ 100 (326)
+|.++.+|++|++++.+.+.+. ....=++|.+|||||||.+ +..++..+.+.
T Consensus 101 Ip~~i~~~e~LglP~i~~~~~~-------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 101 IPSKIPTLEELGLPPIVRELAE-------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred cCccCCCHHHcCCCHHHHHHHh-------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 5778889999999988776332 2345678899999999966 46677776443
No 195
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.81 E-value=0.008 Score=59.36 Aligned_cols=137 Identities=20% Similarity=0.241 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 020452 57 PTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133 (326)
Q Consensus 57 p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 133 (326)
+..+|-+.+.-+ +.+|-|-|+.-.-|-|||.-. +.++.++....+- .|| -||++|..
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~nI------------------wGP-FLVVtpaS 627 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETHNI------------------WGP-FLVVTPAS 627 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhccC------------------CCc-eEEeehHH
Confidence 445676665443 456778999999999999765 5567777655432 232 47788876
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH---------HhcCCCEEEeCcHHHH---HHHhcCCcccccCCCe
Q 020452 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---------LKARPELVVGTPGRLW---ELMSGGEKHLVELHTL 201 (326)
Q Consensus 134 ~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---------~~~~~~IlV~Tp~~l~---~ll~~~~~~~~~l~~l 201 (326)
.|- .+...+..|+. .+++....|+.......+. ...+.||+|++.+.+. .++.. -.+
T Consensus 628 tL~-NWaqEisrFlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk--------vKW 696 (1185)
T KOG0388|consen 628 TLH-NWAQEISRFLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK--------VKW 696 (1185)
T ss_pred HHh-HHHHHHHHhCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh--------hhh
Confidence 653 45666666665 4688888888776554433 2347899999987763 22221 236
Q ss_pred eEEeecchhHhhhCCCHHHHHHHH
Q 020452 202 SFFVLDEADRMIENGHFRELQSII 225 (326)
Q Consensus 202 ~~lViDEah~l~~~~~~~~i~~il 225 (326)
.+.|+|||..+-++. ..-+..++
T Consensus 697 QYMILDEAQAIKSSs-S~RWKtLL 719 (1185)
T KOG0388|consen 697 QYMILDEAQAIKSSS-SSRWKTLL 719 (1185)
T ss_pred hheehhHHHHhhhhh-hhHHHHHh
Confidence 789999999886432 33334444
No 196
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.77 E-value=0.0075 Score=61.77 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+++-|++++.. ...+++|.|..|||||.+...-+...+... .-.+-++|+++.|+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-------------------~v~p~~IL~lTFTnk 60 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE-------------------NASPHSIMAVTFTNK 60 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-------------------CCCHHHeEeeeccHH
Confidence 3689999999843 457899999999999988655554443211 011337999999999
Q ss_pred HHHHHHHHHHHHHc
Q 020452 135 LALQVTDHLKEVAK 148 (326)
Q Consensus 135 L~~Q~~~~l~~~~~ 148 (326)
.|.++.+++..+..
T Consensus 61 AA~em~~Rl~~~~~ 74 (715)
T TIGR01075 61 AAAEMRHRIGALLG 74 (715)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988753
No 197
>PRK06921 hypothetical protein; Provisional
Probab=96.73 E-value=0.026 Score=50.60 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.+.++++.|++|+|||.... .+...+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l 141 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANEL 141 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHH
Confidence 35789999999999997653 344444
No 198
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.68 E-value=0.0037 Score=48.94 Aligned_cols=20 Identities=35% Similarity=0.360 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l 91 (326)
+..+++.||+|+|||.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 56789999999999976543
No 199
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.68 E-value=0.0077 Score=54.02 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=23.5
Q ss_pred cCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 197 ~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.....+.+|+||||.|-.. -+..+.+.++...
T Consensus 126 ~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s 157 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSD-AQAALRRTMEDFS 157 (346)
T ss_pred CCCcceEEEEechhhhhHH-HHHHHHHHHhccc
Confidence 3455789999999998743 4667777777655
No 200
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.017 Score=54.32 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=17.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIM 94 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il 94 (326)
+.+.+.||||+|||......+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 4678999999999977655443
No 201
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.60 E-value=0.022 Score=57.42 Aligned_cols=68 Identities=26% Similarity=0.362 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHHHh---cC-CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAAH---QG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~---~g-~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.|+.-|..+|..+.. +| +..++.|.||||||+...- ++..+ +..+|||+|
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~-------------------------~~p~Lvi~~ 62 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV-------------------------NRPTLVIAH 62 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh-------------------------CCCEEEEEC
Confidence 788999999887632 23 3667899999999987543 33322 225899999
Q ss_pred cHHHHHHHHHHHHHHHcC
Q 020452 132 TRELALQVTDHLKEVAKG 149 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~ 149 (326)
+..+|.|+++.++.++..
T Consensus 63 n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 63 NKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999999999764
No 202
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.56 E-value=0.0069 Score=61.46 Aligned_cols=71 Identities=17% Similarity=0.091 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++-|++++.. ....++|.|..|||||.+.+.-+...+.... -.+-++|+++.|+..
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-------------------v~p~~IL~lTFT~kA 59 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------------------YQARHIAAVTFTNKA 59 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------------------CCHHHeeeEechHHH
Confidence 478999999843 4578899999999999887665555542210 112379999999999
Q ss_pred HHHHHHHHHHHHc
Q 020452 136 ALQVTDHLKEVAK 148 (326)
Q Consensus 136 ~~Q~~~~l~~~~~ 148 (326)
|.++.+++..++.
T Consensus 60 A~em~~Rl~~~l~ 72 (672)
T PRK10919 60 AREMKERVAQTLG 72 (672)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999887754
No 203
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.54 E-value=0.0064 Score=59.20 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHh----cC----CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 59 PIQKACIPAAAH----QG----KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 59 ~~Q~~~i~~~l~----~g----~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
|+|...+-.++- .| +.+++.-|-|.|||.......+..+.-. ...+..+++.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-------------------g~~~~~i~~~A 61 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-------------------GEPGAEIYCAA 61 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-------------------CccCceEEEEe
Confidence 578877766641 12 2478888999999987655555444321 12356899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchh
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah 210 (326)
++++-|..+++.+..+......... ... .... ....-.|.....+.+...+.+.... ..-.+..++|+||+|
T Consensus 62 ~~~~QA~~~f~~~~~~i~~~~~l~~-~~~-----~~~~-~~~~~~i~~~~~~s~~~~~s~~~~~-~dG~~~~~~i~DE~h 133 (477)
T PF03354_consen 62 NTRDQAKIVFDEAKKMIEASPELRK-RKK-----PKII-KSNKKEIEFPKTGSFFKALSSDADS-LDGLNPSLAIFDELH 133 (477)
T ss_pred CCHHHHHHHHHHHHHHHHhChhhcc-chh-----hhhh-hhhceEEEEcCCCcEEEEEecCCCC-ccCCCCceEEEeCCC
Confidence 9999999999999998765321100 000 0000 0011233333223333333332222 223357899999999
Q ss_pred HhhhC
Q 020452 211 RMIEN 215 (326)
Q Consensus 211 ~l~~~ 215 (326)
.+-+.
T Consensus 134 ~~~~~ 138 (477)
T PF03354_consen 134 AHKDD 138 (477)
T ss_pred CCCCH
Confidence 87653
No 204
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.50 E-value=0.028 Score=48.83 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=30.6
Q ss_pred CCeeEEeecchhHhhhCC-CHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 199 HTLSFFVLDEADRMIENG-HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~-~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
...++|+||++|.+.... ....+..++..+.. .+.|+|+.|...|..
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~-----------------------~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIE-----------------------SGKQLILTSDRPPSE 143 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHH-----------------------TTSEEEEEESS-TTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHh-----------------------hCCeEEEEeCCCCcc
Confidence 457899999999886431 24555566655541 456888888777643
No 205
>PRK04296 thymidine kinase; Provisional
Probab=96.50 E-value=0.0062 Score=51.68 Aligned_cols=19 Identities=21% Similarity=-0.010 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
.=.++.+|+|+|||...+-
T Consensus 3 ~i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred EEEEEECCCCCHHHHHHHH
Confidence 3467899999999966543
No 206
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=96.46 E-value=0.0048 Score=62.92 Aligned_cols=133 Identities=20% Similarity=0.198 Sum_probs=79.3
Q ss_pred CCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 54 FKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 54 ~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
-..+.+||...+..+ +++.-+-|+.-.+|-|||..-+. ++..++..+. ..|| -+|+|
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIs-LitYLmE~K~------------------~~GP-~Lviv 451 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTIS-LITYLMEHKQ------------------MQGP-FLIIV 451 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHH-HHHHHHHHcc------------------cCCC-eEEec
Confidence 347899999988654 33344778899999999987644 4444444321 2344 47889
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHH--HHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecc
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEK--QERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~--~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDE 208 (326)
|+-.|.+-. ..+..+.. .+..+...|...... .........+|+++|.+.+.. ......--+..++||||
T Consensus 452 PlstL~NW~-~Ef~kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik-----dk~lLsKI~W~yMIIDE 523 (1157)
T KOG0386|consen 452 PLSTLVNWS-SEFPKWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK-----DKALLSKISWKYMIIDE 523 (1157)
T ss_pred cccccCCch-hhcccccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC-----CHHHHhccCCcceeecc
Confidence 998887643 33333322 233333333221111 112223578999999877643 12223334578999999
Q ss_pred hhHhhh
Q 020452 209 ADRMIE 214 (326)
Q Consensus 209 ah~l~~ 214 (326)
.|+|-+
T Consensus 524 GHRmKN 529 (1157)
T KOG0386|consen 524 GHRMKN 529 (1157)
T ss_pred cccccc
Confidence 999853
No 207
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.45 E-value=0.011 Score=57.47 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=63.6
Q ss_pred EEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc-CCCcEEE
Q 020452 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK-GINVRVV 155 (326)
Q Consensus 77 v~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~-~~~~~v~ 155 (326)
..+.||||||++....|++...+. ...-|+.|.....++.....+..-.. +.-..-.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg----------------------yr~flffvnq~nilekt~~nftd~~s~kylf~e~ 59 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG----------------------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSEN 59 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc----------------------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhh
Confidence 467899999999877777766332 33567777766655544333321110 0000000
Q ss_pred EEEcCCCHH----HHHHHHhcCCCEEEeCcHHHHHHHhcC---CcccccCCCeeEE-eecchhHhhh
Q 020452 156 PIVGGMSTE----KQERLLKARPELVVGTPGRLWELMSGG---EKHLVELHTLSFF-VLDEADRMIE 214 (326)
Q Consensus 156 ~~~g~~~~~----~~~~~~~~~~~IlV~Tp~~l~~ll~~~---~~~~~~l~~l~~l-ViDEah~l~~ 214 (326)
..+++.... ...........|..+|.+.|...+-+. .....++.+.++| +-||||++-.
T Consensus 60 i~~~d~~i~ikkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 60 ININDENIEIKKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred hhcCCceeeeeeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 111111110 000112346789999999987766332 2344556666665 6699999864
No 208
>PRK14974 cell division protein FtsY; Provisional
Probab=96.41 E-value=0.041 Score=50.91 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=30.1
Q ss_pred CeeEEeecchhHhh-hCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 200 TLSFFVLDEADRMI-ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 200 ~l~~lViDEah~l~-~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
+.++|++|.+.++. +......+..+.+.+. +..-++.++||..+
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~------------------------pd~~iLVl~a~~g~ 266 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTK------------------------PDLVIFVGDALAGN 266 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhC------------------------CceEEEeeccccch
Confidence 45799999999875 3334556666665554 45667888998753
No 209
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.39 E-value=0.013 Score=53.88 Aligned_cols=51 Identities=27% Similarity=0.373 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 44 LLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 44 ~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.-+..+.+.|+ +++.|...+..++..+++++++|+|||||| +++-.++..+
T Consensus 122 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~ 172 (319)
T PRK13894 122 FTLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEM 172 (319)
T ss_pred CCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhh
Confidence 34455656665 567888888877778899999999999999 4445555543
No 210
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.38 E-value=0.0027 Score=52.98 Aligned_cols=111 Identities=18% Similarity=0.279 Sum_probs=45.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEE
Q 020452 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155 (326)
Q Consensus 76 lv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~ 155 (326)
++.|+-|.|||.+.-+.+...+.. +..+++|.+|+.+-++.+++.+..-++..+.+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----------------------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~ 58 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----------------------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEE 58 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------------------EEEE-SS--S-HHHHHCC------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----------------------cCceEEEecCCHHHHHHHHHHHHhhccccccccc
Confidence 478999999998766654443321 1247999999999998888877766554443320
Q ss_pred EEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHH
Q 020452 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 225 (326)
Q Consensus 156 ~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il 225 (326)
... ...........+..|-.-.|+.+... -...++||||||=.+- ...+..++
T Consensus 59 ~~~---~~~~~~~~~~~~~~i~f~~Pd~l~~~----------~~~~DlliVDEAAaIp----~p~L~~ll 111 (177)
T PF05127_consen 59 KKK---RIGQIIKLRFNKQRIEFVAPDELLAE----------KPQADLLIVDEAAAIP----LPLLKQLL 111 (177)
T ss_dssp -----------------CCC--B--HHHHCCT--------------SCEEECTGGGS-----HHHHHHHH
T ss_pred ccc---ccccccccccccceEEEECCHHHHhC----------cCCCCEEEEechhcCC----HHHHHHHH
Confidence 000 00000011112445666666665211 1235789999997553 44555554
No 211
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.37 E-value=0.022 Score=53.36 Aligned_cols=73 Identities=21% Similarity=0.184 Sum_probs=43.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 151 (326)
++-+.+.||||.|||.+..-.+....+.. +...-+||.+-|--... .++++.|+.-++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~--------------------~~~kVaiITtDtYRIGA--~EQLk~Ya~im~ 260 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK--------------------KKKKVAIITTDTYRIGA--VEQLKTYADIMG 260 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc--------------------cCcceEEEEeccchhhH--HHHHHHHHHHhC
Confidence 67889999999999988644333333111 12335677776654332 455666666667
Q ss_pred cEEEEEEcCCCHHHH
Q 020452 152 VRVVPIVGGMSTEKQ 166 (326)
Q Consensus 152 ~~v~~~~g~~~~~~~ 166 (326)
+.+..+.........
T Consensus 261 vp~~vv~~~~el~~a 275 (407)
T COG1419 261 VPLEVVYSPKELAEA 275 (407)
T ss_pred CceEEecCHHHHHHH
Confidence 766555544333333
No 212
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.014 Score=54.72 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
.|+.+++.+|||+|||......+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3667899999999999886554433
No 213
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.36 E-value=0.015 Score=53.50 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=35.7
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 47 KSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 47 ~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+...|. +++.|...+..++..+.+++++|+||||||... -.++..+
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i 168 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEI 168 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 34555555 567888888888788899999999999999553 4455544
No 214
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.27 E-value=0.039 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~i 93 (326)
++.+++.+|||+|||.+....+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5578889999999997765433
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.27 E-value=0.041 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=17.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+++.+++|+|||..+.. +...+
T Consensus 100 ~~~~l~G~~GtGKThLa~a-ia~~l 123 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA-ICNEL 123 (244)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHH
Confidence 4789999999999976643 44444
No 216
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=96.26 E-value=0.053 Score=54.88 Aligned_cols=70 Identities=27% Similarity=0.371 Sum_probs=53.0
Q ss_pred CCCCChHHHHHHHHHHHh---cC-CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 53 GFKEPTPIQKACIPAAAH---QG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~l~---~g-~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
+| .|++.|..++..+.. ++ +..++.+.+|+||++.... ++... +..+||
T Consensus 10 ~~-~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~-l~~~~-------------------------~r~vLI 62 (652)
T PRK05298 10 PY-KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN-VIARL-------------------------QRPTLV 62 (652)
T ss_pred CC-CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH-HHHHh-------------------------CCCEEE
Confidence 44 799999999988742 22 2567999999999977532 22221 226999
Q ss_pred EeCcHHHHHHHHHHHHHHHcC
Q 020452 129 ITPTRELALQVTDHLKEVAKG 149 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~~~~~ 149 (326)
|+|+...|.|+++.++.++..
T Consensus 63 Vt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 63 LAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred EECCHHHHHHHHHHHHHhcCC
Confidence 999999999999999998753
No 217
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.21 E-value=0.015 Score=59.68 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=53.3
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++-|.+++.. ....++|.|..|||||.+...-+...+... .-.+-++|+|+-|+..
T Consensus 9 ~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~-------------------~v~p~~IL~lTFT~kA 66 (721)
T PRK11773 9 SLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVE-------------------NASPYSIMAVTFTNKA 66 (721)
T ss_pred hcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-------------------CCChhHeEeeeccHHH
Confidence 589999999843 457899999999999988755554443211 0112379999999999
Q ss_pred HHHHHHHHHHHHc
Q 020452 136 ALQVTDHLKEVAK 148 (326)
Q Consensus 136 ~~Q~~~~l~~~~~ 148 (326)
|.++.+++..+..
T Consensus 67 A~Em~~Rl~~~~~ 79 (721)
T PRK11773 67 AAEMRHRIEQLLG 79 (721)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988765
No 218
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.21 E-value=0.016 Score=58.79 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=52.5
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHH
Q 020452 57 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136 (326)
Q Consensus 57 p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 136 (326)
+++-|.+++.. ...+++|.|..|||||.+.+--+...+.... ....++++|+.|+..+
T Consensus 2 Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-------------------~~p~~IL~vTFt~~Aa 59 (664)
T TIGR01074 2 LNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-------------------YKARNIAAVTFTNKAA 59 (664)
T ss_pred CCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------------------CCHHHeEEEeccHHHH
Confidence 68899998743 4678999999999999887666655542210 1133789999999999
Q ss_pred HHHHHHHHHHHc
Q 020452 137 LQVTDHLKEVAK 148 (326)
Q Consensus 137 ~Q~~~~l~~~~~ 148 (326)
.++.+.+.....
T Consensus 60 ~em~~Rl~~~l~ 71 (664)
T TIGR01074 60 REMKERVAKTLG 71 (664)
T ss_pred HHHHHHHHHHhC
Confidence 999998887654
No 219
>PRK12377 putative replication protein; Provisional
Probab=96.19 E-value=0.048 Score=48.27 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..++++.||+|+|||..+.. +...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l 125 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRL 125 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHH
Confidence 36899999999999976533 44444
No 220
>PRK08116 hypothetical protein; Validated
Probab=96.19 E-value=0.03 Score=50.19 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=17.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRLL 98 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~~ 98 (326)
.+++.|++|+|||..+. ++...+.
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~ 139 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELI 139 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHH
Confidence 49999999999997664 3555443
No 221
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.16 E-value=0.068 Score=54.04 Aligned_cols=160 Identities=16% Similarity=0.226 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 119 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~-dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (326)
.++..-..+..+..+.+..-|.+.+..++..++ -+++.|.-|-|||.+.-+.+.... ..
T Consensus 199 ~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~-~~------------------- 258 (758)
T COG1444 199 LDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAA-RL------------------- 258 (758)
T ss_pred CCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHH-Hh-------------------
Confidence 333344456666555666666666666665555 567899999999988776663222 11
Q ss_pred CCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 120 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 120 ~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
....+++|.+|+.+-++.+++.+.+-+...|.+-.+....... ..........|=+-.|.... .
T Consensus 259 -~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~--~~~~~~~~~~i~y~~P~~a~-------------~ 322 (758)
T COG1444 259 -AGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGE--IREVSGDGFRIEYVPPDDAQ-------------E 322 (758)
T ss_pred -cCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccc--eeeecCCceeEEeeCcchhc-------------c
Confidence 1145899999999999998888877766665432221111000 00000011223344554321 1
Q ss_pred CeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 200 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.-++||+|||=.+. ...+..++.. .+.++||.|+...
T Consensus 323 ~~DllvVDEAAaIp----lplL~~l~~~----------------------------~~rv~~sTTIhGY 359 (758)
T COG1444 323 EADLLVVDEAAAIP----LPLLHKLLRR----------------------------FPRVLFSTTIHGY 359 (758)
T ss_pred cCCEEEEehhhcCC----hHHHHHHHhh----------------------------cCceEEEeeeccc
Confidence 15789999997553 4566666643 3578899999744
No 222
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.16 E-value=0.022 Score=49.42 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.+..+++.||+|+|||.....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 567899999999999976643
No 223
>PRK05642 DNA replication initiation factor; Validated
Probab=96.15 E-value=0.021 Score=50.11 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=19.7
Q ss_pred CeeEEeecchhHhhhC-CCHHHHHHHHHhCC
Q 020452 200 TLSFFVLDEADRMIEN-GHFRELQSIIDMLP 229 (326)
Q Consensus 200 ~l~~lViDEah~l~~~-~~~~~i~~il~~l~ 229 (326)
+.++||+|++|.+... .....+..++..+.
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~ 127 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLR 127 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHH
Confidence 4578999999977532 22445666665554
No 224
>PRK06893 DNA replication initiation factor; Validated
Probab=96.15 E-value=0.015 Score=50.89 Aligned_cols=19 Identities=16% Similarity=-0.043 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
..+++.||+|+|||.....
T Consensus 40 ~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4579999999999966533
No 225
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.03 Score=54.39 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=28.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG---KDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g---~dvlv~apTGsGKT~~~~l~ 92 (326)
.+|+++--.+.+.+.|.. ++..| +.++++||.|+|||.++.+.
T Consensus 10 ~~f~dliGQe~vv~~L~~----------------a~~~~ri~ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRN----------------AFTLNKIPQSILLVGASGVGKTTCARII 55 (491)
T ss_pred CCHHHhcCcHHHHHHHHH----------------HHHcCCCCceEEEECCCCccHHHHHHHH
Confidence 356666556666665542 12333 46899999999999876543
No 226
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.09 E-value=0.029 Score=51.14 Aligned_cols=70 Identities=27% Similarity=0.348 Sum_probs=46.1
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCC
Q 020452 44 LLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH 123 (326)
Q Consensus 44 ~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (326)
.-++.+.+.|. +++-|...+..++..+++++++|+||||||... -.++..+... ...
T Consensus 106 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~--------------------~~~ 162 (299)
T TIGR02782 106 FTLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN--------------------DPT 162 (299)
T ss_pred CCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc--------------------CCC
Confidence 33455555554 456677777777678889999999999999554 4455544221 112
Q ss_pred eEEEEEeCcHHHH
Q 020452 124 LRALIITPTRELA 136 (326)
Q Consensus 124 ~~~lil~Pt~~L~ 136 (326)
-+++++-.+.|+.
T Consensus 163 ~ri~tiEd~~El~ 175 (299)
T TIGR02782 163 DRVVIIEDTRELQ 175 (299)
T ss_pred ceEEEECCchhhc
Confidence 3788888877763
No 227
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.08 E-value=0.049 Score=49.17 Aligned_cols=113 Identities=12% Similarity=0.182 Sum_probs=59.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCc
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~ 152 (326)
.+++++|+||.|||.. ++++.+..... .......-|-+++-+|...-....|..+-..+ +.
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~-----------~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---ga 122 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQ-----------SDEDAERIPVVYVQMPPEPDERRFYSAILEAL---GA 122 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCC-----------CCCCCccccEEEEecCCCCChHHHHHHHHHHh---Cc
Confidence 4899999999999963 35554332110 01111223667777888776666666554432 22
Q ss_pred EEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCC--HHHHHHHHHhCC
Q 020452 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH--FRELQSIIDMLP 229 (326)
Q Consensus 153 ~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~--~~~i~~il~~l~ 229 (326)
.+. ......... .....+++. -++++|||||+|.++.... .......++.|.
T Consensus 123 P~~---~~~~~~~~~--------------~~~~~llr~--------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~ 176 (302)
T PF05621_consen 123 PYR---PRDRVAKLE--------------QQVLRLLRR--------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG 176 (302)
T ss_pred ccC---CCCCHHHHH--------------HHHHHHHHH--------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHh
Confidence 210 011111100 011334432 3488999999999986543 233444445443
No 228
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.06 E-value=0.018 Score=58.41 Aligned_cols=114 Identities=18% Similarity=0.303 Sum_probs=70.8
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH-Hc
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV-AK 148 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~-~~ 148 (326)
....-+++.+.||+|||.-+.--+++.+..+.. .....+.+--|++-.+.-+.+.+..- ..
T Consensus 391 ~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~------------------g~~~na~v~qprrisaisiaerva~er~e 452 (1282)
T KOG0921|consen 391 AENRVVIIKGETGCGKSTQVAQFLLESFLENSN------------------GASFNAVVSQPRRISAISLAERVANERGE 452 (1282)
T ss_pred hcCceeeEeecccccchhHHHHHHHHHHhhccc------------------cccccceeccccccchHHHHHHHHHhhHH
Confidence 344556889999999999998888888866532 23345677778887776666654332 11
Q ss_pred CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 149 ~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
..+-.|+. ...........---|+.||-+-++..+.++ +..+.++++||.|.-
T Consensus 453 ~~g~tvgy-----~vRf~Sa~prpyg~i~fctvgvllr~~e~g------lrg~sh~i~deiher 505 (1282)
T KOG0921|consen 453 EVGETCGY-----NVRFDSATPRPYGSIMFCTVGVLLRMMENG------LRGISHVIIDEIHER 505 (1282)
T ss_pred hhcccccc-----cccccccccccccceeeeccchhhhhhhhc------ccccccccchhhhhh
Confidence 11211111 000000000112258899999999988765 456789999999954
No 229
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.05 E-value=0.075 Score=53.90 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=26.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG---KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g---~dvlv~apTGsGKT~~~~l 91 (326)
+|+++=-.+.+++.|... +.++ +-+|++||.|+|||.+..+
T Consensus 14 tFdEVIGQe~Vv~~L~~a----------------L~~gRL~HAyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 14 DFASLVGQEHVVRALTHA----------------LDGGRLHHAYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred cHHHHcCcHHHHHHHHHH----------------HhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 455555566666655432 2333 2458999999999977654
No 230
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.04 E-value=0.05 Score=52.55 Aligned_cols=31 Identities=6% Similarity=0.078 Sum_probs=19.2
Q ss_pred CCeeEEeecchhHhhhC-CCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIEN-GHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~-~~~~~i~~il~~l~ 229 (326)
.+.++||+||+|.+... ...+.+..++..+.
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~ 236 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI 236 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHH
Confidence 45779999999977532 12344555555443
No 231
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.01 E-value=0.044 Score=57.18 Aligned_cols=138 Identities=22% Similarity=0.151 Sum_probs=86.4
Q ss_pred CCChHHHHHHHHHHH----hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 55 KEPTPIQKACIPAAA----HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l----~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
..+.++|.+.+..+. ..+.+-++....|.|||+-.+..+....... ....+.+++++
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~-------------------~~~~~~~liv~ 397 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESI-------------------KVYLGPALIVV 397 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcc-------------------cCCCCCeEEEe
Confidence 467888998875532 1356778889999999988765554421111 01134789999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCH----HHHHHHHhc-C----CCEEEeCcHHHHHHHhcCCcccccCCCe
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMST----EKQERLLKA-R----PELVVGTPGRLWELMSGGEKHLVELHTL 201 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~----~~~~~~~~~-~----~~IlV~Tp~~l~~ll~~~~~~~~~l~~l 201 (326)
|+. ++.++.+.+.++...... +...+|.... ......+.. . .+++++|.+.+...... .....-...
T Consensus 398 p~s-~~~nw~~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~--~~~l~~~~~ 473 (866)
T COG0553 398 PAS-LLSNWKREFEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVD--HGGLKKIEW 473 (866)
T ss_pred cHH-HHHHHHHHHhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhh--HHHHhhcee
Confidence 975 566777777777664432 6666766541 222222222 2 68999999888763210 111333457
Q ss_pred eEEeecchhHhhhC
Q 020452 202 SFFVLDEADRMIEN 215 (326)
Q Consensus 202 ~~lViDEah~l~~~ 215 (326)
..+|+||+|.+-+.
T Consensus 474 ~~~v~DEa~~ikn~ 487 (866)
T COG0553 474 DRVVLDEAHRIKND 487 (866)
T ss_pred eeeehhhHHHHhhh
Confidence 89999999997543
No 232
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.01 E-value=0.049 Score=45.56 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=31.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
+++.||+|+|||...+--+...+ + .+.+++|+.. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~----------------------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-A----------------------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H----------------------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68899999999976644444433 1 1336777754 45567777776665
No 233
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.00 E-value=0.033 Score=54.98 Aligned_cols=48 Identities=29% Similarity=0.312 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHh
Q 020452 56 EPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 103 (326)
Q Consensus 56 ~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~ 103 (326)
+|+.+|...+..+ +..|+=-|+.+|||||||++.+=..+..+...+.+
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~eek 65 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDFEEK 65 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHhHHh
Confidence 7899999887664 45788779999999999999888888887666444
No 234
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.96 E-value=0.18 Score=51.95 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=18.0
Q ss_pred CeeEEeecchhHhhhCCCHHHHHHHHHh
Q 020452 200 TLSFFVLDEADRMIENGHFRELQSIIDM 227 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~~~~~i~~il~~ 227 (326)
...+|||||+|.+... ....+..+++.
T Consensus 869 ~v~IIILDEID~L~kK-~QDVLYnLFR~ 895 (1164)
T PTZ00112 869 NVSILIIDEIDYLITK-TQKVLFTLFDW 895 (1164)
T ss_pred cceEEEeehHhhhCcc-HHHHHHHHHHH
Confidence 4668999999999753 23445555543
No 235
>PHA02533 17 large terminase protein; Provisional
Probab=95.93 E-value=0.046 Score=53.82 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|.|+|...+..+ ..++-.++..+-..|||.+....++...... .+..+++++|+..-
T Consensus 59 ~L~p~Q~~i~~~~-~~~R~~ii~~aRq~GKStl~a~~al~~a~~~---------------------~~~~v~i~A~~~~Q 116 (534)
T PHA02533 59 QMRDYQKDMLKIM-HKNRFNACNLSRQLGKTTVVAIFLLHYVCFN---------------------KDKNVGILAHKASM 116 (534)
T ss_pred CCcHHHHHHHHHH-hcCeEEEEEEcCcCChHHHHHHHHHHHHHhC---------------------CCCEEEEEeCCHHH
Confidence 6899999999776 3456667788889999998765555444321 23489999999999
Q ss_pred HHHHHHHHHHHHcC
Q 020452 136 ALQVTDHLKEVAKG 149 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~ 149 (326)
|..+++.++.+...
T Consensus 117 A~~vF~~ik~~ie~ 130 (534)
T PHA02533 117 AAEVLDRTKQAIEL 130 (534)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999888876553
No 236
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.92 E-value=0.064 Score=49.11 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=26.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--cEEE-EcCCCchHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK--DIIG-AAETGSGKTLAF 89 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~--dvlv-~apTGsGKT~~~ 89 (326)
.+|+++-.++.+.+.+... +.+|+ ++++ .||+|+|||...
T Consensus 18 ~~~~~~~~~~~~~~~l~~~----------------~~~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 18 STIDECILPAADKETFKSI----------------VKKGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred CcHHHhcCcHHHHHHHHHH----------------HhcCCCCeEEEeeCcCCCCHHHHH
Confidence 3677777777776666532 22332 4555 899999999764
No 237
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.91 E-value=0.17 Score=50.69 Aligned_cols=73 Identities=11% Similarity=0.134 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 020452 56 EPTPIQKACIPAAAH--QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~--~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 133 (326)
.|+|.-.+-|..++. ..+-.++.+|-|.|||.+..+.+...+.. .+.+++|.+|..
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----------------------~Gi~IlvTAH~~ 226 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----------------------LEIDIVVQAQRK 226 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----------------------cCCeEEEECCCh
Confidence 345544444444432 34567788999999998876555543311 145899999999
Q ss_pred HHHHHHHHHHHHHHcCC
Q 020452 134 ELALQVTDHLKEVAKGI 150 (326)
Q Consensus 134 ~L~~Q~~~~l~~~~~~~ 150 (326)
.-+.++++.++..+...
T Consensus 227 ~ts~evF~rv~~~le~l 243 (752)
T PHA03333 227 TMCLTLYNRVETVVHAY 243 (752)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 99999999998887633
No 238
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.90 E-value=0.026 Score=53.54 Aligned_cols=121 Identities=16% Similarity=0.208 Sum_probs=70.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH-HHHHHHHHHHHHHcCCCcE
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE-LALQVTDHLKEVAKGINVR 153 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~-L~~Q~~~~l~~~~~~~~~~ 153 (326)
.++.+..|||||.+...-++..+... ..+.+++++-++.. |-.-++..+.......++.
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~--------------------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~ 63 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN--------------------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGIN 63 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc--------------------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCCh
Confidence 57789999999999888777776543 12458999999988 6666888888776665553
Q ss_pred EEEEEcCCCHHHHHHHHhcCCCEEEeCc-HHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 154 VVPIVGGMSTEKQERLLKARPELVVGTP-GRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 154 v~~~~g~~~~~~~~~~~~~~~~IlV~Tp-~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
...-...... .......+..|++..- +.. ........+.++.+|||..+.. ..+..++.++.
T Consensus 64 ~~~~~~~~~~--~i~~~~~g~~i~f~g~~d~~--------~~ik~~~~~~~~~idEa~~~~~----~~~~~l~~rlr 126 (396)
T TIGR01547 64 YEFKKSKSSM--EIKILNTGKKFIFKGLNDKP--------NKLKSGAGIAIIWFEEASQLTF----EDIKELIPRLR 126 (396)
T ss_pred hheeecCCcc--EEEecCCCeEEEeecccCCh--------hHhhCcceeeeehhhhhhhcCH----HHHHHHHHHhh
Confidence 2111111100 0000011233444332 111 1112334478999999998743 34555555543
No 239
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.84 E-value=0.084 Score=48.67 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=17.6
Q ss_pred hcCC--cEEEEcCCCchHHHHHHH
Q 020452 70 HQGK--DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 70 ~~g~--dvlv~apTGsGKT~~~~l 91 (326)
.++. ++++.||+|+|||..+..
T Consensus 32 ~~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 32 DSPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred hCCCCceEEEECCCCCCHHHHHHH
Confidence 4555 799999999999977644
No 240
>PRK04195 replication factor C large subunit; Provisional
Probab=95.81 E-value=0.051 Score=53.03 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=27.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ---GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~---g~dvlv~apTGsGKT~~~~ 90 (326)
+|+++-.++.....|... +..+. . .+.+++.||+|+|||..+.
T Consensus 12 ~l~dlvg~~~~~~~l~~~------------l~~~~-~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREW------------IESWL-KGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CHHHhcCCHHHHHHHHHH------------HHHHh-cCCCCCeEEEECCCCCCHHHHHH
Confidence 466666677666665442 11111 2 4689999999999996653
No 241
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.77 E-value=0.064 Score=55.47 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=17.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~ 95 (326)
-+|+.+|.|+|||.++.+..-.
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999887654433
No 242
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.75 E-value=0.068 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=17.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+++.||+|+|||..... +...+
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~ 172 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYI 172 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHH
Confidence 4589999999999966533 33333
No 243
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.72 E-value=0.12 Score=44.12 Aligned_cols=20 Identities=30% Similarity=0.238 Sum_probs=15.6
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIM 94 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il 94 (326)
+++.||||+|||.+..-.+.
T Consensus 4 i~lvGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHH
Confidence 57899999999988654443
No 244
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.71 E-value=0.044 Score=55.09 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=16.7
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
+.+|+.||.|+|||.++.+.+
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 367999999999998765533
No 245
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.68 E-value=0.14 Score=48.50 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
.++++.||+|+|||.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999764
No 246
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.64 E-value=0.045 Score=48.96 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=19.4
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
..|.-+++.|++|+|||...+-.+..
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 46778899999999999665443333
No 247
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.61 E-value=0.043 Score=48.15 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.+..+++.||+|+|||....
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34689999999999996654
No 248
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.078 Score=51.21 Aligned_cols=19 Identities=26% Similarity=0.148 Sum_probs=15.8
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~ 92 (326)
.+++.||.|+|||.++.+.
T Consensus 42 a~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999877553
No 249
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.56 E-value=0.16 Score=47.69 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=14.9
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
.+++.||.|+|||..+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 468999999999977644
No 250
>PRK08727 hypothetical protein; Validated
Probab=95.56 E-value=0.047 Score=47.86 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
..+++.||+|+|||....
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999996554
No 251
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.55 E-value=0.13 Score=51.72 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=15.5
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~i 93 (326)
+++.||.|+|||.++.+.+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999998765543
No 252
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.52 E-value=0.044 Score=56.27 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=51.6
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+++-|.+++.. ...+++|.|..|||||.+.+--+...+.... -.+-++|+++-|+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-------------------i~P~~IL~lTFT~k 60 (726)
T TIGR01073 3 AHLNPEQREAVKT---TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-------------------VAPWNILAITFTNK 60 (726)
T ss_pred cccCHHHHHHHhC---CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------CCHHHeeeeeccHH
Confidence 3589999999853 4578999999999999887665555442110 01226888888888
Q ss_pred HHHHHHHHHHHHHc
Q 020452 135 LALQVTDHLKEVAK 148 (326)
Q Consensus 135 L~~Q~~~~l~~~~~ 148 (326)
.|..+.+++..++.
T Consensus 61 AA~em~~Rl~~~~~ 74 (726)
T TIGR01073 61 AAREMKERVEKLLG 74 (726)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888877654
No 253
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.50 E-value=0.21 Score=56.65 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g-~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
.+++-|..++..++.++ +=.++.++.|+|||.+. -.++..+ +. .+.+++.++||..
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~-~~---------------------~G~~V~~lAPTgr 485 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLA-SE---------------------QGYEIQIITAGSL 485 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHH-Hh---------------------cCCeEEEEeCCHH
Confidence 68999999999887544 45688999999999653 3333332 21 2458999999997
Q ss_pred HHHHHHH
Q 020452 135 LALQVTD 141 (326)
Q Consensus 135 L~~Q~~~ 141 (326)
-+....+
T Consensus 486 AA~~L~e 492 (1960)
T TIGR02760 486 SAQELRQ 492 (1960)
T ss_pred HHHHHHH
Confidence 6665544
No 254
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.48 E-value=0.13 Score=51.23 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.8
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~i 93 (326)
++++||.|+|||.++.+.+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998875543
No 255
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.47 E-value=0.06 Score=56.58 Aligned_cols=149 Identities=18% Similarity=0.104 Sum_probs=82.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 151 (326)
|++++..-..|.|||..-+...+...-...... ...-...+.. .....-.|||+|. ++..|+.+.+.......
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~---cS~~~~e~~n--~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~- 446 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSC---CSELVKEGEN--LVETGATLIICPN-AILMQWFEEIHKHISSL- 446 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhh---hhHHHhcccc--eeecCceEEECcH-HHHHHHHHHHHHhcccc-
Confidence 556777778899999887665554421111110 0000001111 1112358999996 57789999988877653
Q ss_pred cEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC----C-------cccccC----CC--eeEEeecchhHhhh
Q 020452 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG----E-------KHLVEL----HT--LSFFVLDEADRMIE 214 (326)
Q Consensus 152 ~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~----~-------~~~~~l----~~--l~~lViDEah~l~~ 214 (326)
+++....|=............++|||++|...|..=+... . .+.... -. +=-+++|||..+-
T Consensus 447 lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMve- 525 (1394)
T KOG0298|consen 447 LKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVE- 525 (1394)
T ss_pred ceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhc-
Confidence 6777666643322222223347899999999886544211 0 011111 11 1237899999554
Q ss_pred CCCHHHHHHHHHhCC
Q 020452 215 NGHFRELQSIIDMLP 229 (326)
Q Consensus 215 ~~~~~~i~~il~~l~ 229 (326)
. -.......+.+|+
T Consensus 526 s-ssS~~a~M~~rL~ 539 (1394)
T KOG0298|consen 526 S-SSSAAAEMVRRLH 539 (1394)
T ss_pred c-hHHHHHHHHHHhh
Confidence 3 3445555566665
No 256
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.46 E-value=0.072 Score=52.22 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=15.5
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~ 92 (326)
-+++.||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~l 58 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRIL 58 (509)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4689999999999776553
No 257
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.45 E-value=0.073 Score=53.16 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=16.0
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~i 93 (326)
-+|++||.|+|||....+.+
T Consensus 40 A~LFtGP~GvGKTTLAriLA 59 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILA 59 (700)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46999999999998765533
No 258
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.071 Score=50.00 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=17.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.|+++.|+||||||.+.-. +...+
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l 66 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEEL 66 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHH
Confidence 3799999999999977533 44444
No 259
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.41 E-value=0.05 Score=54.11 Aligned_cols=145 Identities=15% Similarity=0.168 Sum_probs=86.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI- 150 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~- 150 (326)
.+-.++..|--.|||+... +++..+... ..+.+++|.+|.+.-++.+++.+..+++..
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s--------------------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f 312 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT--------------------FRGIKIGYTAHIRKATEPVFEEIGARLRQWF 312 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh--------------------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhc
Confidence 4557889999999998766 666655433 236699999999999999999999987632
Q ss_pred -CcEEEEEEcCCCHHHHHHHHhcC--CCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHh
Q 020452 151 -NVRVVPIVGGMSTEKQERLLKAR--PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 227 (326)
Q Consensus 151 -~~~v~~~~g~~~~~~~~~~~~~~--~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~ 227 (326)
+-.+....| ... .-...++ ..|..++. . ......-...+++|+|||+.+-+ +.+..++-.
T Consensus 313 ~~~~v~~vkG-e~I---~i~f~nG~kstI~FaSa-------r--ntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~ 375 (738)
T PHA03368 313 GASRVDHVKG-ETI---SFSFPDGSRSTIVFASS-------H--NTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGF 375 (738)
T ss_pred chhheeeecC-cEE---EEEecCCCccEEEEEec-------c--CCCCccCCcccEEEEechhhCCH----HHHHHHHHH
Confidence 111111111 100 0000111 12333321 1 11112234689999999997754 455555544
Q ss_pred CCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc--HHHHHHhhc
Q 020452 228 LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS--ADFRKKLKH 277 (326)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~--~~~~~~l~~ 277 (326)
+.. .+.++|++|.|-+.. .-|.-.|+.
T Consensus 376 l~~-----------------------~n~k~I~ISS~Ns~~~sTSFL~nLk~ 404 (738)
T PHA03368 376 LNQ-----------------------TNCKIIFVSSTNTGKASTSFLYNLKG 404 (738)
T ss_pred Hhc-----------------------cCccEEEEecCCCCccchHHHHhhcC
Confidence 442 468899999986532 444444543
No 260
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.41 E-value=0.043 Score=59.52 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=76.3
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHH
Q 020452 57 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136 (326)
Q Consensus 57 p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 136 (326)
.|+-|.++|. ..+++++|.|..|||||.+.+--++..+... ...-++++++=|++.+
T Consensus 2 ~t~~Q~~ai~---~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--------------------~~~~~il~~tFt~~aa 58 (1232)
T TIGR02785 2 WTDEQWQAIY---TRGQNILVSASAGSGKTAVLVERIIKKILRG--------------------VDIDRLLVVTFTNAAA 58 (1232)
T ss_pred CCHHHHHHHh---CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC--------------------CCHhhEEEEeccHHHH
Confidence 5889999994 4689999999999999998877777665422 0112699999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH-HHhcCCcccccCCCeeEEeecchhH
Q 020452 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE-LMSGGEKHLVELHTLSFFVLDEADR 211 (326)
Q Consensus 137 ~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~-ll~~~~~~~~~l~~l~~lViDEah~ 211 (326)
.++.+++...+...--. ........+.+..-...-|+|-..+.. +++.. .....++ -.+=|.||...
T Consensus 59 ~e~~~ri~~~l~~~~~~------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~-~~~l~ld-P~F~i~de~e~ 126 (1232)
T TIGR02785 59 REMKERIEEALQKALQQ------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKH-YYLLDLD-PSFRILTDTEQ 126 (1232)
T ss_pred HHHHHHHHHHHHHHHhc------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHh-hhhcCCC-CCceeCCHHHH
Confidence 99988888765421100 001111112222223456789887754 44332 1122221 13345887774
No 261
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.40 E-value=0.031 Score=46.84 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=18.3
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHH
Q 020452 69 AHQGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~~l~i 93 (326)
+.+++++++.|++|+|||..+...+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~ 68 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIA 68 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHH
Confidence 4578899999999999998865443
No 262
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.36 E-value=0.19 Score=46.93 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=19.1
Q ss_pred HHHHhcC--CcEEEEcCCCchHHHHHHH
Q 020452 66 PAAAHQG--KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 66 ~~~l~~g--~dvlv~apTGsGKT~~~~l 91 (326)
..++.+| .++|+.+|+|+|||..+-+
T Consensus 40 rr~v~~~~l~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 40 RRAVEAGHLHSMILWGPPGTGKTTLARL 67 (436)
T ss_pred HHHHhcCCCceeEEECCCCCCHHHHHHH
Confidence 3444555 3899999999999976643
No 263
>PLN03025 replication factor C subunit; Provisional
Probab=95.35 E-value=0.26 Score=45.35 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.9
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
.++++.||+|+|||..+..
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4789999999999976644
No 264
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.34 E-value=0.086 Score=45.84 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.+..+++.|++|+|||....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999996553
No 265
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.27 E-value=0.031 Score=52.42 Aligned_cols=27 Identities=30% Similarity=0.148 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLL 98 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~ 98 (326)
.+..+++++|||||||... ..++..+.
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 4567899999999999654 55655553
No 266
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.22 E-value=0.11 Score=51.87 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=28.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG---KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g---~dvlv~apTGsGKT~~~~l~i 93 (326)
+|+++--.+.+++.|.. ++..| +.++++||.|+|||.++.+.+
T Consensus 22 ~f~dliGq~~~v~~L~~----------------~~~~gri~ha~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTN----------------AFETGRIAQAFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred CHHHhcCcHHHHHHHHH----------------HHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 56666556655555543 22344 368999999999998775544
No 267
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.19 E-value=0.21 Score=48.51 Aligned_cols=139 Identities=15% Similarity=0.100 Sum_probs=80.0
Q ss_pred CChHHHHHHHHHHHh-----cC----CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEE
Q 020452 56 EPTPIQKACIPAAAH-----QG----KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~-----~g----~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (326)
.+-|+|.-++-.++- .| +..++..|-+-|||......+...++-.. ..+-..
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-------------------~~~~~~ 121 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-------------------RSGAGI 121 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-------------------hcCCcE
Confidence 678999999988750 11 14688889999999765533333333221 224479
Q ss_pred EEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCC---EEEeCcHHHHHHHhcCCcccccCCCeeE
Q 020452 127 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPE---LVVGTPGRLWELMSGGEKHLVELHTLSF 203 (326)
Q Consensus 127 lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~---IlV~Tp~~l~~ll~~~~~~~~~l~~l~~ 203 (326)
.|++|+.+-+.+.+..++......+ + .........+ |...--......+.... ...+-.+..+
T Consensus 122 ~i~A~s~~qa~~~F~~ar~mv~~~~----------~---l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~-~~~Dg~~~~~ 187 (546)
T COG4626 122 YILAPSVEQAANSFNPARDMVKRDD----------D---LRDLCNVQTHSRTITHRKTDSTIKAVAADP-NTVDGLNSVG 187 (546)
T ss_pred EEEeccHHHHHHhhHHHHHHHHhCc----------c---hhhhhccccceeEEEecccceeeeeeccCC-CcccCCCcce
Confidence 9999999999999998888765432 0 0000111112 22222222223333322 2233445678
Q ss_pred EeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 204 FVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 204 lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.|+||.|...+.+ ..+..+..-+.
T Consensus 188 ~I~DEih~f~~~~--~~~~~~~~g~~ 211 (546)
T COG4626 188 AIIDELHLFGKQE--DMYSEAKGGLG 211 (546)
T ss_pred EEEehhhhhcCHH--HHHHHHHhhhc
Confidence 9999999876542 45555554443
No 268
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.18 E-value=0.2 Score=50.04 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.1
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+|+.||.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 458999999999987755
No 269
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.18 E-value=0.093 Score=53.46 Aligned_cols=21 Identities=24% Similarity=0.105 Sum_probs=16.1
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
+-+.+.+|||+|||.+.....
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 346789999999998765433
No 270
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.17 E-value=0.09 Score=52.60 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=16.0
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~i 93 (326)
-++++||.|+|||.++.+.+
T Consensus 39 AyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 56999999999998775533
No 271
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.17 E-value=0.052 Score=47.20 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=33.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
.|..+++.+++|+|||...+-.+.+.+.+. +-+++|++- .+-..++.+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~----------------------ge~vlyvs~-ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF----------------------GEKVLYVSF-EEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH----------------------T--EEEEES-SS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc----------------------CCcEEEEEe-cCCHHHHHHHHHHc
Confidence 456789999999999977655555554331 116777774 33446666666654
No 272
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.16 E-value=0.036 Score=51.45 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 62 KACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 62 ~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
...+..++..+++++++||||||||... -.++..+
T Consensus 152 ~~~l~~~v~~~~nilI~G~tGSGKTTll-~aLl~~i 186 (344)
T PRK13851 152 EAFLHACVVGRLTMLLCGPTGSGKTTMS-KTLISAI 186 (344)
T ss_pred HHHHHHHHHcCCeEEEECCCCccHHHHH-HHHHccc
Confidence 3445555578899999999999999543 4455443
No 273
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.13 Score=48.91 Aligned_cols=19 Identities=32% Similarity=0.186 Sum_probs=15.9
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~ 92 (326)
.++++||.|+|||.++.+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4889999999999887553
No 274
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.12 E-value=0.034 Score=51.99 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=20.3
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+.-+++++|||||||... ..++..+
T Consensus 132 ~~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred ccCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 35778999999999999654 4455544
No 275
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.11 E-value=0.12 Score=49.84 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=17.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+++.||+|+|||.... .+...+
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l 154 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYV 154 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHH
Confidence 368999999999996653 344443
No 276
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.09 E-value=0.38 Score=43.12 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=16.8
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
..+.+.+++|+|||..+...+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~ 96 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMA 96 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 577889999999998765433
No 277
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.03 E-value=0.35 Score=53.85 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~-g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
.+++-|..++..++.+ ++-+++.+..|+|||.+. -.++..+... ....+.+++.++||..
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l------------------~~~~~~~V~glAPTgr 1027 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL------------------PESERPRVVGLGPTHR 1027 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh------------------hcccCceEEEECCcHH
Confidence 6899999999998744 356788999999999664 2333333111 0122457888999987
Q ss_pred HHHHH
Q 020452 135 LALQV 139 (326)
Q Consensus 135 L~~Q~ 139 (326)
-+..+
T Consensus 1028 AAk~L 1032 (1747)
T PRK13709 1028 AVGEM 1032 (1747)
T ss_pred HHHHH
Confidence 76554
No 278
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.02 E-value=0.26 Score=54.26 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~-g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
.+++-|.+++..++.+ ++-+++.+..|+|||.+.- .++..+..-. ...+.+++.++||..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l~------------------e~~g~~V~glAPTgk 895 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFR-AVMSAVNMLP------------------ESERPRVVGLGPTHR 895 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHH-HHHHHHHHHh------------------hccCceEEEEechHH
Confidence 6899999999888643 4678889999999997642 2222221100 022457889999988
Q ss_pred HHHHH
Q 020452 135 LALQV 139 (326)
Q Consensus 135 L~~Q~ 139 (326)
-+..+
T Consensus 896 Aa~~L 900 (1623)
T PRK14712 896 AVGEM 900 (1623)
T ss_pred HHHHH
Confidence 76654
No 279
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.00 E-value=0.1 Score=49.76 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=17.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+++.||+|+|||... -.+...+
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l 160 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEI 160 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHH
Confidence 35789999999999765 3344444
No 280
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.99 E-value=0.2 Score=48.97 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.7
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~ 92 (326)
+.++++||.|+|||.++.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47899999999999877553
No 281
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.96 E-value=0.034 Score=50.89 Aligned_cols=65 Identities=23% Similarity=0.173 Sum_probs=46.2
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 50 YRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 50 ~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
.-..|..+++-|...+..+...+.|+++++.||||||... -.+...+- ... |+|.+
T Consensus 151 dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~~~i~----------------------~~e-RvIti 206 (355)
T COG4962 151 DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALSGFID----------------------SDE-RVITI 206 (355)
T ss_pred HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHHhcCC----------------------Ccc-cEEEE
Confidence 3345678899999999888766779999999999999543 22332221 112 78888
Q ss_pred eCcHHHHHH
Q 020452 130 TPTRELALQ 138 (326)
Q Consensus 130 ~Pt~~L~~Q 138 (326)
--|.||--+
T Consensus 207 EDtaELql~ 215 (355)
T COG4962 207 EDTAELQLA 215 (355)
T ss_pred eehhhhccC
Confidence 888877544
No 282
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.95 E-value=0.15 Score=49.35 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEE-EEEeCc-HHHHHHHHHHHHHHHcC
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA-LIITPT-RELALQVTDHLKEVAKG 149 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lil~Pt-~~L~~Q~~~~l~~~~~~ 149 (326)
|+-+.+.||||+|||.+.....-....+. +..++ ++-+-+ |.=+ .+.++.++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~---------------------G~~kV~LI~~Dt~RigA---~EQLr~~Aei 311 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH---------------------GASKVALLTTDSYRIGG---HEQLRIYGKI 311 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc---------------------CCCeEEEEeCCccchhH---HHHHHHHHHH
Confidence 44578899999999988654433221111 11123 333333 2222 3444555554
Q ss_pred CCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH
Q 020452 150 INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184 (326)
Q Consensus 150 ~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l 184 (326)
.++.+...............+...-.++|-|+|+.
T Consensus 312 lGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 312 LGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred hCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcC
Confidence 56655444433333333334444456899999954
No 283
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.89 E-value=0.062 Score=45.33 Aligned_cols=39 Identities=33% Similarity=0.399 Sum_probs=30.6
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 49 IYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 49 l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
|.+.|+ .++-|...+...+..|..+++.+|||||||...
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 344444 567788888777788999999999999999654
No 284
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.87 E-value=0.32 Score=55.14 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHH---HHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFG---LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~-g~dvlv~apTGsGKT~~~~---l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.+++.|..++..++.+ ++-+++.++.|+|||.... -++.+.+ . ..+.+++.++|
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~---------------------~~g~~v~glAp 1076 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-E---------------------SEQLQVIGLAP 1076 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-H---------------------hcCCeEEEEeC
Confidence 7899999999988643 3556789999999996652 1222222 1 12457899999
Q ss_pred cHHHHHHH
Q 020452 132 TRELALQV 139 (326)
Q Consensus 132 t~~L~~Q~ 139 (326)
|..-+.++
T Consensus 1077 T~~Aa~~L 1084 (1960)
T TIGR02760 1077 THEAVGEL 1084 (1960)
T ss_pred hHHHHHHH
Confidence 98766554
No 285
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.86 E-value=0.18 Score=49.27 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=18.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~i 93 (326)
..|+.+.+.||||+|||......+
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 356778899999999998764433
No 286
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.86 E-value=0.13 Score=51.54 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.0
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~i 93 (326)
-++++||.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35899999999998875543
No 287
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.84 E-value=0.44 Score=41.69 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=18.8
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIM 94 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il 94 (326)
..|.-+++.+++|+|||...+-.+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4577889999999999976543333
No 288
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.83 E-value=0.057 Score=49.51 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=38.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..|..-+++.. .+.+.| .+++.|..-+..++..+++++++++||||||. ++.+++..+
T Consensus 110 Rk~~~~~~t~~---~l~~~g--t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I 167 (312)
T COG0630 110 RKFSDEPITPE---DLIEYG--TISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI 167 (312)
T ss_pred EcCCCCCCCHH---HHhhcC--CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC
Confidence 33444444443 333333 46677776676777899999999999999994 456666655
No 289
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.80 E-value=0.076 Score=47.98 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~i 93 (326)
++.+++.+|||+|||.+....+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3467889999999997764433
No 290
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.80 E-value=0.22 Score=46.48 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=17.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.++++.||+|+|||.+. -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 58999999999999664 3344444
No 291
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.79 E-value=0.1 Score=45.88 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=35.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 147 (326)
.|..+++.|++|+|||...+-.+...+.+ +-+++|++ +.+-..|+.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~-----------------------ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-----------------------GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-----------------------CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 46688999999999997664444444311 33688887 4556667777776653
No 292
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.79 E-value=0.4 Score=47.35 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=15.8
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~i 93 (326)
.+++.||.|+|||..+.+.+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999998765533
No 293
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.77 E-value=0.14 Score=46.78 Aligned_cols=22 Identities=23% Similarity=0.028 Sum_probs=17.3
Q ss_pred CCc-EEEEcCCCchHHHHHHHHH
Q 020452 72 GKD-IIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 72 g~d-vlv~apTGsGKT~~~~l~i 93 (326)
..+ +++.||.|+|||.++...+
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA 45 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALA 45 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHH
Confidence 456 9999999999998764433
No 294
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.69 E-value=0.073 Score=49.26 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 63 ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 63 ~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+..++..+++++++|+||||||.. +-.++..+
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTl-l~aL~~~i 184 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTF-TNAALREI 184 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHhhC
Confidence 44445556889999999999999954 34555544
No 295
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=0.18 Score=50.64 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=28.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG---KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g---~dvlv~apTGsGKT~~~~l~i 93 (326)
.+|+++--++.+...|... +..+ +.+++.||.|+|||.++...+
T Consensus 13 ~~f~~liGq~~i~~~L~~~----------------l~~~rl~~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNA----------------LISNRIAPAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred CcHhhccChHHHHHHHHHH----------------HHcCCCCceEEEECCCCCChHHHHHHHH
Confidence 3566666666666555431 2233 567999999999998765533
No 296
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.65 E-value=0.12 Score=49.41 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 020452 57 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 57 p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~ 90 (326)
+.......+..+ ..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L-~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRL-TIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHH-hcCCCEEEECCCCCCHHHHHH
Confidence 444455555555 589999999999999997764
No 297
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.65 E-value=0.087 Score=45.64 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.7
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
++++.||+|+|||..+.
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 78999999999996653
No 298
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.60 E-value=0.14 Score=50.91 Aligned_cols=31 Identities=10% Similarity=0.246 Sum_probs=19.7
Q ss_pred CCeeEEeecchhHhhhCC-CHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENG-HFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~-~~~~i~~il~~l~ 229 (326)
.++++|||||+|.+.... ....+..++..+.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~ 407 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLH 407 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHH
Confidence 347899999999886432 2344555555543
No 299
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.55 E-value=0.17 Score=50.52 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=16.9
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
+.+|+.+|.|+|||.++.+.+
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 467899999999998875543
No 300
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.54 E-value=0.15 Score=47.85 Aligned_cols=22 Identities=27% Similarity=0.096 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~i 93 (326)
++-+++.+|+|+|||....-.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5567899999999997765444
No 301
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.53 E-value=0.22 Score=51.59 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=14.5
Q ss_pred EEEEcCCCchHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGL 91 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l 91 (326)
+|+.||.|+|||.++.+
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 48999999999987654
No 302
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.52 E-value=0.17 Score=48.04 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=29.7
Q ss_pred cccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~---g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
.+|++++-.+...+.+... .+..|..++..- +...+.+++.||+|+|||..+
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g----~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVG----IEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC----CCCCCceEEECCCCCChHHHH
Confidence 4577776555555555442 122222121111 123467999999999999765
No 303
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.40 E-value=0.37 Score=47.90 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=16.4
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
+-++++||.|+|||.++-+.+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357889999999998775543
No 304
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.38 E-value=0.28 Score=49.07 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.0
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~ 92 (326)
+.+|+.||.|+|||.++.+.
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34689999999999876553
No 305
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.36 E-value=0.35 Score=47.75 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=15.4
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~ 92 (326)
-+++.||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~l 58 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARIL 58 (527)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4689999999999776553
No 306
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.31 E-value=0.61 Score=41.43 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=23.3
Q ss_pred CChHHHHHHHHHH---HhcCC-cEEEEcCCCchHHHHHH
Q 020452 56 EPTPIQKACIPAA---AHQGK-DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 56 ~p~~~Q~~~i~~~---l~~g~-dvlv~apTGsGKT~~~~ 90 (326)
.+++.+.+++..+ +..+. .+++.||+|+|||...-
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4556666666543 23333 68899999999996653
No 307
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=94.29 E-value=0.29 Score=48.23 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=88.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC-C
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG-I 150 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~-~ 150 (326)
.+-.+.--|--.|||+ ++.|++..++.+ -.+.++-|++.-+.-++-+++++...++. +
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s--------------------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF 260 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKN--------------------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMF 260 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHh--------------------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhc
Confidence 3446777899999995 568888888764 33679999999999888877777655432 2
Q ss_pred CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH-H-HhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhC
Q 020452 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE-L-MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 228 (326)
Q Consensus 151 ~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~-l-l~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l 228 (326)
+-+...-. ++-.|.+.-|+.=-. + +.........-.+.+++++||||-+- .+.+..|+..+
T Consensus 261 ~~~~vi~~-------------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm 323 (668)
T PHA03372 261 PRKHTIEN-------------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFL 323 (668)
T ss_pred Cccceeee-------------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhh
Confidence 21111000 122355554433211 0 11011112445678999999999663 45677777777
Q ss_pred CCCCCCCCCCcccccccccccccCCCCceEEEEeeecc--CcHHHHHHhhc
Q 020452 229 PMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA--LSADFRKKLKH 277 (326)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~--~~~~~~~~l~~ 277 (326)
.. ++..+|..|.|=+ ...-|.-.|+.
T Consensus 324 ~q-----------------------~~~KiIfISS~Nsg~~sTSfL~~Lk~ 351 (668)
T PHA03372 324 AQ-----------------------NTTKIIFISSTNTTNDATCFLTKLNN 351 (668)
T ss_pred cc-----------------------cCceEEEEeCCCCCCccchHHHhccC
Confidence 63 5688889998864 22344444443
No 308
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.28 E-value=0.15 Score=51.10 Aligned_cols=21 Identities=29% Similarity=0.165 Sum_probs=16.7
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
+.+|++||.|+|||.++.+.+
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHH
Confidence 358899999999998875543
No 309
>PF13173 AAA_14: AAA domain
Probab=94.21 E-value=0.63 Score=36.47 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=18.6
Q ss_pred eeEEeecchhHhhhCCCHHHHHHHHHh
Q 020452 201 LSFFVLDEADRMIENGHFRELQSIIDM 227 (326)
Q Consensus 201 l~~lViDEah~l~~~~~~~~i~~il~~ 227 (326)
-.++++||+|.+- ++...+..+...
T Consensus 62 ~~~i~iDEiq~~~--~~~~~lk~l~d~ 86 (128)
T PF13173_consen 62 KKYIFIDEIQYLP--DWEDALKFLVDN 86 (128)
T ss_pred CcEEEEehhhhhc--cHHHHHHHHHHh
Confidence 4689999999885 456677777664
No 310
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.21 E-value=0.11 Score=46.31 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=42.3
Q ss_pred CCCCCChHHHHHHHHHH------HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 020452 52 LGFKEPTPIQKACIPAA------AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 125 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~------l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
..|......+..++..+ +.++.++++.||+|+|||..+...... +... + .
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~-l~~~----------------------g-~ 134 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNE-LLKA----------------------G-I 134 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHH-HHHc----------------------C-C
Confidence 34444455555544332 346789999999999999877544433 3321 2 3
Q ss_pred EEEEeCcHHHHHHHHHHH
Q 020452 126 ALIITPTRELALQVTDHL 143 (326)
Q Consensus 126 ~lil~Pt~~L~~Q~~~~l 143 (326)
-++++++.+|+.++...+
T Consensus 135 sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 135 SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred eEEEEEHHHHHHHHHHHH
Confidence 456667778877765544
No 311
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=94.12 E-value=0.32 Score=50.08 Aligned_cols=122 Identities=20% Similarity=0.197 Sum_probs=65.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC--
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-- 150 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-- 150 (326)
--.|+.---|-|||+-.+..+...++..+ .+.-++|||+|-.- +..++..|.++...+
T Consensus 697 sGcILAHcMGLGKTlQVvtflhTvL~c~k-------------------lg~ktaLvV~PlNt-~~NW~~EFekWm~~~e~ 756 (1567)
T KOG1015|consen 697 SGCILAHCMGLGKTLQVVTFLHTVLLCDK-------------------LGFKTALVVCPLNT-ALNWMNEFEKWMEGLED 756 (1567)
T ss_pred cchHHHHhhcccceehhhHHHHHHHHhhc-------------------cCCceEEEEcchHH-HHHHHHHHHHhcccccc
Confidence 34566666799999865433333332221 23448999999765 556677788776642
Q ss_pred --CcEEEEEEcCCCHHHH---HHHHhcCCCEEEeCcHHHHHHHhcCCccccc----------CCCeeEEeecchhHhhh
Q 020452 151 --NVRVVPIVGGMSTEKQ---ERLLKARPELVVGTPGRLWELMSGGEKHLVE----------LHTLSFFVLDEADRMIE 214 (326)
Q Consensus 151 --~~~v~~~~g~~~~~~~---~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~----------l~~l~~lViDEah~l~~ 214 (326)
.+.|..+..-...... ...|...-.|.|.-+..+..+-......... -..-++||+||+|.+-+
T Consensus 757 ~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKN 835 (1567)
T KOG1015|consen 757 DEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKN 835 (1567)
T ss_pred cccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhcc
Confidence 2344333322222222 2233334467666666654443322111111 12358999999997753
No 312
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=94.10 E-value=0.15 Score=47.33 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=36.4
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 36 f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+..+.....-+..+.+.|+ +++.+...+..++..+.+++++++||+|||...
T Consensus 144 IR~~~~~~~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 144 LRVPRPRTFTLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL 195 (340)
T ss_pred EEeeCCccCCHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH
Confidence 3333333334556666676 456777777777778889999999999999544
No 313
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.10 E-value=0.49 Score=45.19 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
.++++.||+|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 478999999999997654
No 314
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.05 E-value=0.21 Score=53.62 Aligned_cols=92 Identities=17% Similarity=0.285 Sum_probs=67.1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.+++|++|+++-+..+++.+.+... +.++..++|+++.....+.+ ....+|+|||- ++..+ .++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----IierG----IDI 877 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG----IDI 877 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhhcc----ccc
Confidence 44899999999999998888887754 46788899999876554433 35789999993 34444 788
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+++++|++.+|++. ...+.....+..
T Consensus 878 P~v~~VIi~~ad~fg----laq~~Qr~GRvG 904 (1147)
T PRK10689 878 PTANTIIIERADHFG----LAQLHQLRGRVG 904 (1147)
T ss_pred ccCCEEEEecCCCCC----HHHHHHHhhccC
Confidence 899999999988642 233445554444
No 315
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.93 E-value=0.16 Score=44.16 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=21.4
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+-+.+|+||||.|-+ |....+.+.++...
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS 141 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYS 141 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHc
Confidence 4568899999999864 45666666665543
No 316
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.88 E-value=0.069 Score=47.78 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 62 KACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 62 ~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.+.+...++.+.+++++|+||||||... ..++..+
T Consensus 117 ~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i 151 (270)
T PF00437_consen 117 AEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEI 151 (270)
T ss_dssp HHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHC
T ss_pred HHHHhhccccceEEEEECCCccccchHH-HHHhhhc
Confidence 3344444457889999999999999654 4455544
No 317
>PF05729 NACHT: NACHT domain
Probab=93.87 E-value=0.5 Score=38.20 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=15.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~ 97 (326)
+++.|+.|+|||... .-++..+
T Consensus 3 l~I~G~~G~GKStll-~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL-RKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHH-HHHHHHH
Confidence 688999999999654 3344444
No 318
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.84 E-value=0.24 Score=47.19 Aligned_cols=21 Identities=29% Similarity=0.153 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~ 92 (326)
|.-+.+.||||+|||......
T Consensus 191 g~vi~lvGpnG~GKTTtlakL 211 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKL 211 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 456788999999999876543
No 319
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.82 E-value=0.25 Score=51.89 Aligned_cols=79 Identities=16% Similarity=0.349 Sum_probs=62.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.+++|++|+++-+..+++.++++.. ++++..++|+++.......+ ....+|+|||- ++..+ .++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p--~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie~G----IDI 728 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVP--EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIETG----IDI 728 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcc----ccc
Confidence 45899999999999998888887643 57899999999876554433 34789999995 45554 778
Q ss_pred CCeeEEeecchhHh
Q 020452 199 HTLSFFVLDEADRM 212 (326)
Q Consensus 199 ~~l~~lViDEah~l 212 (326)
.+++++|++.+++.
T Consensus 729 p~v~~VIi~~a~~~ 742 (926)
T TIGR00580 729 PNANTIIIERADKF 742 (926)
T ss_pred ccCCEEEEecCCCC
Confidence 89999999999864
No 320
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.82 E-value=0.49 Score=48.44 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
.++++.||+|+|||..+.
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 489999999999997653
No 321
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.81 E-value=0.28 Score=47.28 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=17.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+++.||+|+|||.... ++...+
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l 165 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHAL 165 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHH
Confidence 358999999999996543 344443
No 322
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.81 E-value=0.55 Score=45.10 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=15.8
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~i 93 (326)
.+++++++|+|||.+..-.+
T Consensus 97 vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 57889999999998765433
No 323
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.81 E-value=0.47 Score=40.11 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
....+++..++|.|||.+++--++..+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~ 47 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV 47 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH
Confidence 567899999999999998877666655
No 324
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.79 E-value=0.039 Score=54.70 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g-~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+|+|.+.+..+-..+ +.+.+..++.+|||.+.+..+...+. ..+.-++++.||.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~----------------------~~P~~~l~v~Pt~~ 73 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSID----------------------QDPGPMLYVQPTDD 73 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEE----------------------eCCCCEEEEEEcHH
Confidence 56899999998873222 47889999999999865544433331 12346999999999
Q ss_pred HHHHHH-HHHHHHHcC
Q 020452 135 LALQVT-DHLKEVAKG 149 (326)
Q Consensus 135 L~~Q~~-~~l~~~~~~ 149 (326)
++.+.. ..+..+.+.
T Consensus 74 ~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 74 AAKDFSKERLDPMIRA 89 (557)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 999866 556666543
No 325
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.77 E-value=0.41 Score=44.69 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=16.5
Q ss_pred hcCC---cEEEEcCCCchHHHHHH
Q 020452 70 HQGK---DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 70 ~~g~---dvlv~apTGsGKT~~~~ 90 (326)
.+|+ -+++.||.|+|||..+.
T Consensus 40 ~~grl~ha~L~~G~~G~GKttlA~ 63 (351)
T PRK09112 40 REGKLHHALLFEGPEGIGKATLAF 63 (351)
T ss_pred HcCCCCeeEeeECCCCCCHHHHHH
Confidence 4554 58999999999997654
No 326
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.096 Score=49.03 Aligned_cols=50 Identities=26% Similarity=0.320 Sum_probs=28.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+.|++.=|++.+-+.++.+-...-+.--.+ .--+|+++.+|+|+|||+.+
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~------apfRNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQ------APFRNILFYGPPGTGKTMFA 401 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhccccccc------chhhheeeeCCCCCCchHHH
Confidence 346666677777666655322110000000 01268999999999999664
No 327
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.74 E-value=0.39 Score=44.96 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=29.1
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
....+|+|||.|.- |-+-.-.+.++++.+-. .+.-+|+.|-+.|
T Consensus 126 ~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~-----------------------~gvvlVaTSN~~P 169 (362)
T PF03969_consen 126 KESRLLCFDEFQVT-DIADAMILKRLFEALFK-----------------------RGVVLVATSNRPP 169 (362)
T ss_pred hcCCEEEEeeeecc-chhHHHHHHHHHHHHHH-----------------------CCCEEEecCCCCh
Confidence 34568999999832 33334445556655542 5678888888887
No 328
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.73 E-value=0.67 Score=46.16 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=16.2
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~ 92 (326)
+.+++.||.|+|||..+...
T Consensus 39 hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45889999999999776543
No 329
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.71 E-value=0.12 Score=48.19 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=19.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.+..++++||||||||... ..++..+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i 146 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYI 146 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhh
Confidence 5678999999999999664 3344443
No 330
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.68 E-value=0.29 Score=45.20 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=19.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.+.++++.|+||+|||..... +...+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~a-Ia~~l 207 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNC-IAKEL 207 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHH
Confidence 457999999999999976543 44444
No 331
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.62 E-value=0.49 Score=45.69 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
|.-+++.+++|+|||...+-.+.. ... .+.+++|+.- .+-..|+...+..+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~-~a~----------------------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAAR-LAA----------------------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH-HHh----------------------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 456788999999999655433332 211 1337888874 44456666665554
No 332
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.62 E-value=0.14 Score=50.19 Aligned_cols=95 Identities=17% Similarity=0.119 Sum_probs=58.2
Q ss_pred ccCCCCHHH-HHHHHHCCCCCCh----HHHHHHHHHHH-hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020452 37 NELRLHPLL-MKSIYRLGFKEPT----PIQKACIPAAA-HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110 (326)
Q Consensus 37 ~~l~l~~~i-~~~l~~~g~~~p~----~~Q~~~i~~~l-~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~ 110 (326)
++.++.+.+ +..|++.--..++ .+|.+-=..+- ..++-++|+|..|||||.+++--+...++..+..
T Consensus 185 sd~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~------- 257 (747)
T COG3973 185 SDTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP------- 257 (747)
T ss_pred cCCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccc-------
Confidence 455666655 4555553332332 23433322221 1345678899999999998876655555544321
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc
Q 020452 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 148 (326)
-.+..+||+.|++-+..-+.+.+-.++.
T Consensus 258 ----------l~~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 258 ----------LQAKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred ----------cccCceEEEcCcHHHHHHHHHhchhhcc
Confidence 1122499999999999988888877754
No 333
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=93.56 E-value=0.86 Score=46.20 Aligned_cols=79 Identities=25% Similarity=0.401 Sum_probs=59.6
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCccccc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
.+.++||.++|+..+..+.+.+... ++++..++|+.........+ ....+|+||| +.+.+| ++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~rG----fD 507 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLREG----LD 507 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----ChhcCC----ee
Confidence 3568999999999999888888765 78888899987765443322 2467899988 345555 77
Q ss_pred CCCeeEEeecchhHhh
Q 020452 198 LHTLSFFVLDEADRMI 213 (326)
Q Consensus 198 l~~l~~lViDEah~l~ 213 (326)
+.+++++|+-+++...
T Consensus 508 iP~v~lVvi~DadifG 523 (655)
T TIGR00631 508 LPEVSLVAILDADKEG 523 (655)
T ss_pred eCCCcEEEEeCccccc
Confidence 8899999988888643
No 334
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.55 E-value=0.18 Score=45.15 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=27.6
Q ss_pred HHHCCCCCChHHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 49 IYRLGFKEPTPIQKACIPAAAH-QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 49 l~~~g~~~p~~~Q~~~i~~~l~-~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
+.++|+ .+-|.+.+..++. .+..+++.++||||||... ..++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 455554 3445555544443 3456899999999999654 4444443
No 335
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.53 E-value=0.57 Score=46.11 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=26.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC---cEEEEcCCCchHHHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK---DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~---dvlv~apTGsGKT~~~~l 91 (326)
+|+++--++.+.+.|... +.+|+ -+++.||.|+|||.++..
T Consensus 12 ~fdeiiGqe~v~~~L~~~----------------I~~grl~hayLf~Gp~G~GKTt~Ar~ 55 (535)
T PRK08451 12 HFDELIGQESVSKTLSLA----------------LDNNRLAHAYLFSGLRGSGKTSSARI 55 (535)
T ss_pred CHHHccCcHHHHHHHHHH----------------HHcCCCCeeEEEECCCCCcHHHHHHH
Confidence 566665566665555431 23342 358999999999977644
No 336
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.45 E-value=0.14 Score=50.95 Aligned_cols=45 Identities=38% Similarity=0.513 Sum_probs=27.6
Q ss_pred HHHCCCCCChHHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 49 IYRLGFKEPTPIQKACIPAAAH-QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 49 l~~~g~~~p~~~Q~~~i~~~l~-~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
|.++|| .+-|...+..++. ...-++++||||||||.+. ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 444554 3444444444433 3457789999999999764 4455544
No 337
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.44 E-value=0.15 Score=49.17 Aligned_cols=45 Identities=29% Similarity=0.460 Sum_probs=30.1
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHH
Q 020452 49 IYRLGFKEPTPIQKACIPAAAHQGKD-IIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 49 l~~~g~~~p~~~Q~~~i~~~l~~g~d-vlv~apTGsGKT~~~~l~il~~~ 97 (326)
+.++|+ ++.|...+..++...+- +++.||||||||.+. ..++..+
T Consensus 237 l~~Lg~---~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~l 282 (500)
T COG2804 237 LEKLGM---SPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSEL 282 (500)
T ss_pred HHHhCC---CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHh
Confidence 445544 66777777676655544 577899999999764 4555554
No 338
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.40 E-value=0.23 Score=50.14 Aligned_cols=116 Identities=23% Similarity=0.210 Sum_probs=69.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~ 153 (326)
-.|+.-.-|-|||...+..++.+-..... ........-.||+||+. +..|+...+.+..+...+.
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~--------------~~~~~~~kttLivcp~s-~~~qW~~elek~~~~~~l~ 218 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKE--------------EDRQKEFKTTLIVCPTS-LLTQWKTELEKVTEEDKLS 218 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcc--------------hhhccccCceeEecchH-HHHHHHHHHhccCCccceE
Confidence 34677778999998876655543222110 00112334578888875 5567777776666655677
Q ss_pred EEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 154 v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
+.+.+| ... ... .....+|+++|++.+.. .. ..--..-.+|+||||.+-..
T Consensus 219 v~v~~g-r~k--d~~-el~~~dVVltTy~il~~----~~---l~~i~w~Riildea~~ikn~ 269 (674)
T KOG1001|consen 219 IYVYHG-RTK--DKS-ELNSYDVVLTTYDILKN----SP---LVKIKWLRIVLDEAHTIKNK 269 (674)
T ss_pred EEEecc-ccc--ccc-hhcCCceEEeeHHHhhc----cc---ccceeEEEEEeccccccCCc
Confidence 777777 111 111 22357899999988752 11 11123456899999988644
No 339
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.40 E-value=0.052 Score=51.29 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=36.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
++++.||||||||.++++|-+... +..+||+=|--++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------------------------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------------------------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------------------------CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999999988866432 225788888888887766665543
No 340
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.36 E-value=1.5 Score=35.92 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=23.5
Q ss_pred CCCeeEEeecchhHhhhCCC--HHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGH--FRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~--~~~i~~il~~l~ 229 (326)
....++||+||+-..++.++ .+.+..+++.-|
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp 126 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP 126 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC
Confidence 35689999999998877665 456666666554
No 341
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.32 E-value=1.2 Score=38.84 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=32.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
.|.-+++.+++|+|||....-.+...+. .+-+++|+.--. -..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~-----------------------~g~~~~y~~~e~-~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK-----------------------QGKKVYVITTEN-TSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh-----------------------CCCEEEEEEcCC-CHHHHHHHHHHC
Confidence 3567888999999999766444443331 133677776543 345566666555
No 342
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.30 E-value=0.44 Score=44.74 Aligned_cols=18 Identities=17% Similarity=0.019 Sum_probs=15.1
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+++.||.|+||+..+..
T Consensus 43 A~Lf~Gp~G~GK~~lA~~ 60 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYR 60 (365)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999977644
No 343
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.30 E-value=1.1 Score=42.96 Aligned_cols=18 Identities=33% Similarity=0.235 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+++++++|+|||.+..-
T Consensus 102 vi~lvG~~GvGKTTtaaK 119 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTK 119 (429)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999977544
No 344
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=93.26 E-value=0.31 Score=51.33 Aligned_cols=173 Identities=17% Similarity=0.253 Sum_probs=105.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHH--HHHhhh-hh---
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLE--EREKAG-KM--- 107 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~--~~~~~~-~~--- 107 (326)
-.|.+||| -|++.=+++|.+ |.+-+..+ ...-|++--+.|=-=+|+-..+.-+.-+.- ..+..+ ..
T Consensus 712 v~FkdLGL--lIIDEEqRFGVk-----~KEkLK~L-r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~ 783 (1139)
T COG1197 712 VKFKDLGL--LIIDEEQRFGVK-----HKEKLKEL-RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTF 783 (1139)
T ss_pred cEEecCCe--EEEechhhcCcc-----HHHHHHHH-hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEE
Confidence 35666665 233333555653 46677666 566677776666666665543332221110 000000 00
Q ss_pred hhhhh----hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH----HHhcCCCEEEe
Q 020452 108 LEEKG----EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER----LLKARPELVVG 179 (326)
Q Consensus 108 ~~~~~----~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~----~~~~~~~IlV~ 179 (326)
..... ......--.++.++.||.|..+-..++.+.++.+.+ ..++++.+|.+...+... ...+..||+||
T Consensus 784 V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVP--EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~ 861 (1139)
T COG1197 784 VSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVP--EARIAVAHGQMRERELEEVMLDFYNGEYDVLVC 861 (1139)
T ss_pred EecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCC--ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 00000 000001123466999999999999999999999977 468899999998766544 34468999999
Q ss_pred CcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 180 Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
|. .+..+ ++..+...+|||-||++. ..++..+..+..
T Consensus 862 TT-----IIEtG----IDIPnANTiIIe~AD~fG----LsQLyQLRGRVG 898 (1139)
T COG1197 862 TT-----IIETG----IDIPNANTIIIERADKFG----LAQLYQLRGRVG 898 (1139)
T ss_pred ee-----eeecC----cCCCCCceEEEecccccc----HHHHHHhccccC
Confidence 95 45555 788899999999999875 345555555554
No 345
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.092 Score=47.70 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=41.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC-----------cHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP-----------TRELALQVTD 141 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P-----------t~~L~~Q~~~ 141 (326)
+=++++||+|+|||.. +-++.+++.-.-. .....-.+|=.. +--|+.++++
T Consensus 178 RliLlhGPPGTGKTSL-CKaLaQkLSIR~~-----------------~~y~~~~liEinshsLFSKWFsESgKlV~kmF~ 239 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSL-CKALAQKLSIRTN-----------------DRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQ 239 (423)
T ss_pred eEEEEeCCCCCChhHH-HHHHHHhheeeec-----------------CccccceEEEEehhHHHHHHHhhhhhHHHHHHH
Confidence 3468899999999954 4556665532110 011111233233 3347788888
Q ss_pred HHHHHHcCCCcEEEEEEcC
Q 020452 142 HLKEVAKGINVRVVPIVGG 160 (326)
Q Consensus 142 ~l~~~~~~~~~~v~~~~g~ 160 (326)
.++++....+.=|+++...
T Consensus 240 kI~ELv~d~~~lVfvLIDE 258 (423)
T KOG0744|consen 240 KIQELVEDRGNLVFVLIDE 258 (423)
T ss_pred HHHHHHhCCCcEEEEEeHH
Confidence 8888888777666666543
No 346
>PRK10436 hypothetical protein; Provisional
Probab=93.13 E-value=0.17 Score=49.02 Aligned_cols=36 Identities=33% Similarity=0.350 Sum_probs=23.0
Q ss_pred HHHHHHHHH-hcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 61 QKACIPAAA-HQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 61 Q~~~i~~~l-~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
|...+..++ ..+.-++++||||||||.+. ..++..+
T Consensus 206 ~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 206 QLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 334443333 34567899999999999765 3455544
No 347
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.08 E-value=0.55 Score=46.03 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=14.9
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+++.||.|+|||.++..
T Consensus 38 a~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 359999999999987644
No 348
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.08 E-value=0.48 Score=43.80 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHHHhcCC---cEEEEcCCCchHHHHHHHH
Q 020452 56 EPTPIQKACIPAAAHQGK---DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~---dvlv~apTGsGKT~~~~l~ 92 (326)
..+|||...|..++..|+ -+++.||.|.|||..+...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 357999999999876654 5789999999999776443
No 349
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.04 E-value=0.79 Score=40.83 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
.|.-+++.+++|+|||...+-.+.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999765443333
No 350
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=92.99 E-value=0.41 Score=44.36 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=18.7
Q ss_pred HHHHHhcCC--cEEEEcCCCchHHHHHH
Q 020452 65 IPAAAHQGK--DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 65 i~~~l~~g~--dvlv~apTGsGKT~~~~ 90 (326)
+..++.+++ ++|+.+|.|+|||..+-
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlAr 180 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLAR 180 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHH
Confidence 344444453 78999999999997653
No 351
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.96 E-value=0.54 Score=46.93 Aligned_cols=74 Identities=20% Similarity=0.362 Sum_probs=56.4
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.|+|+..++++++.+... ++.+..++|+....+....+. ...+|||||- .+..+ +++
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~arG----IDi 323 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAARG----LHI 323 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhhcC----CCc
Confidence 458999999999999999888764 788999999988766544332 4678999993 44444 678
Q ss_pred CCeeEEeecch
Q 020452 199 HTLSFFVLDEA 209 (326)
Q Consensus 199 ~~l~~lViDEa 209 (326)
.+++++|.-+.
T Consensus 324 p~V~~VInyd~ 334 (572)
T PRK04537 324 DGVKYVYNYDL 334 (572)
T ss_pred cCCCEEEEcCC
Confidence 88888876443
No 352
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.95 E-value=0.66 Score=44.44 Aligned_cols=22 Identities=32% Similarity=0.264 Sum_probs=16.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~ 95 (326)
-+++++++|+|||.+..-.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3678999999999886544433
No 353
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.88 E-value=0.68 Score=40.46 Aligned_cols=27 Identities=30% Similarity=0.051 Sum_probs=19.2
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQR 96 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~ 96 (326)
..|.-+++.|++|+|||...+--+.+.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~ 37 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENI 37 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356678999999999996554434433
No 354
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.85 E-value=2.2 Score=39.32 Aligned_cols=44 Identities=25% Similarity=0.383 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCcccccCCCe-eEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 182 GRLWELMSGGEKHLVELHTL-SFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 182 ~~l~~ll~~~~~~~~~l~~l-~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+++..++.+. .-... -.+|+||+|..........+..+++.-.
T Consensus 122 ~~lL~~L~~~~----~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisq 166 (408)
T KOG2228|consen 122 SKLLEALKKGD----ETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQ 166 (408)
T ss_pred HHHHHHHhcCC----CCCCceEEEEeehhhccccchhhHHHHHHHHHHh
Confidence 45566665542 22223 4679999998877766666666665543
No 355
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.84 E-value=0.86 Score=43.18 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=32.9
Q ss_pred CeeEEeecchhHhhhC-CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 200 TLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 200 ~l~~lViDEah~l~~~-~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
+++++++|+++.+... .....+-.++..+.. .+.|+|+.|-..|..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~-----------------------~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE-----------------------NGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHh-----------------------cCCEEEEEcCCCchh
Confidence 6889999999988743 346667777776663 344888888777643
No 356
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.23 Score=51.97 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=36.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
-.-+|++.|.-+.+..-|+++-.. |.-+=+...+.-+..-+-++.++|.|||||+.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~-PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLL-PLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHh-HhhhhhHhhhcccCCCcceeecCCCCCchhHHH
Confidence 344799999888888888886442 111111111111234567999999999999875
No 357
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.81 E-value=0.13 Score=49.98 Aligned_cols=49 Identities=24% Similarity=0.320 Sum_probs=36.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
.++++.||||||||..+++|.+-.. +.-+||.=|--+|.......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-------------------------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-------------------------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-------------------------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 4799999999999999998876321 114777778888887766666554
No 358
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.77 E-value=0.44 Score=45.59 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=55.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
..++||.|+++.-|..+++.+... ++++..++|+....+....+ ....+|||||- .+..+ .++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~rG----iDi 321 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAARG----LHI 321 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhhcC----CCc
Confidence 348999999999999888877654 78999999998876654433 34789999993 44444 778
Q ss_pred CCeeEEeecc
Q 020452 199 HTLSFFVLDE 208 (326)
Q Consensus 199 ~~l~~lViDE 208 (326)
.+++++|.-+
T Consensus 322 p~v~~VI~~d 331 (423)
T PRK04837 322 PAVTHVFNYD 331 (423)
T ss_pred cccCEEEEeC
Confidence 8888877543
No 359
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=92.71 E-value=0.56 Score=48.51 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=52.1
Q ss_pred CCCEEEeCcHHHH-HHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCccccccccccccc
Q 020452 173 RPELVVGTPGRLW-ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251 (326)
Q Consensus 173 ~~~IlV~Tp~~l~-~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (326)
...|+++||..|. |++.+. ..+..+..+||||||++.+..-+..+.+++..-+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~r----i~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n---------------------- 60 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGI----IPPELITGILVLRADRIIESSQEAFILRLYRQKN---------------------- 60 (814)
T ss_pred cCCEEEEechhhHhHHhcCC----CCHHHccEEEEeecccccccccHHHHHHHHHHhC----------------------
Confidence 4579999999885 565443 7889999999999999987666777777776544
Q ss_pred CCCCceEEEEeeecc
Q 020452 252 QRKKRQTLVFSATIA 266 (326)
Q Consensus 252 ~~~~~q~i~~SATl~ 266 (326)
+..-+.+|||...
T Consensus 61 --~~gfIkafSdsP~ 73 (814)
T TIGR00596 61 --KTGFIKAFSDNPE 73 (814)
T ss_pred --CCcceEEecCCCc
Confidence 4567999999986
No 360
>PRK13764 ATPase; Provisional
Probab=92.70 E-value=0.18 Score=50.27 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=20.7
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..++++++++|||||||... ..++..+
T Consensus 255 ~~~~~ILIsG~TGSGKTTll-~AL~~~i 281 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFA-QALAEFY 281 (602)
T ss_pred hcCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 45788999999999999654 5555555
No 361
>PRK09183 transposase/IS protein; Provisional
Probab=92.62 E-value=0.41 Score=42.65 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=19.7
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHH
Q 020452 69 AHQGKDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~~l~ 92 (326)
+..+.++++.||+|+|||......
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 357889999999999999766543
No 362
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.62 E-value=1.5 Score=42.48 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.1
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~ 92 (326)
+.+++.||.|+|||.++...
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~l 59 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIF 59 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999776543
No 363
>PF14516 AAA_35: AAA-like domain
Probab=92.57 E-value=3 Score=38.58 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 59 PIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 59 ~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
|+.++++..+...|.-+.|.||-.+|||.. +.-+++.+
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l 55 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERL 55 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHH
Confidence 488899988865599999999999999955 44455554
No 364
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.55 E-value=0.15 Score=50.90 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=42.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 151 (326)
..++++.||||||||..+++|-+... +.-+||+=|--|+........++. |
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~-------------------------~~S~VV~DpKGEl~~~Ta~~R~~~----G 208 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFW-------------------------EDSVVVHDIKLENYELTSGWREKQ----G 208 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhC-------------------------CCCEEEEeCcHHHHHHHHHHHHHC----C
Confidence 34789999999999999999987653 124788888888887777666654 4
Q ss_pred cEEEEE
Q 020452 152 VRVVPI 157 (326)
Q Consensus 152 ~~v~~~ 157 (326)
-+|.++
T Consensus 209 ~~V~vf 214 (606)
T PRK13897 209 QKVFVW 214 (606)
T ss_pred CeEEEE
Confidence 444443
No 365
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.39 E-value=2.2 Score=38.78 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=14.7
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
++++.||+|+|||.+..
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999997653
No 366
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.39 E-value=1.3 Score=39.70 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=16.0
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
+-+++.+|+|+|||.+..-.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 356778999999998765544
No 367
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.32 E-value=0.13 Score=46.12 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 62 KACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 62 ~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
...+..++.+++.++++||+|+|||...
T Consensus 23 ~~ll~~l~~~~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 23 SYLLDLLLSNGRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHHHCTEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHHcCCcEEEECCCCCchhHHH
Confidence 3445556678999999999999999654
No 368
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.27 E-value=0.63 Score=40.28 Aligned_cols=52 Identities=25% Similarity=0.187 Sum_probs=32.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
.|.-+++.+++|+|||...+-.+...+.+ +-+++|+.-. +-..++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~-----------------------g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN-----------------------GEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-----------------------CCeEEEEECC-CCHHHHHHHHHHc
Confidence 35678889999999986544333333211 2367776553 4466777776665
No 369
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=92.21 E-value=0.97 Score=43.38 Aligned_cols=71 Identities=20% Similarity=0.390 Sum_probs=54.2
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
..++||.|++++-+..+++.+... ++.+..++|+....+....+. ...+|||||- .+..+ +++
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~~G----iDi 311 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAARG----IDI 311 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccccC----ccC
Confidence 458999999999999988888763 788999999988766654433 4678999993 34443 667
Q ss_pred CCeeEEee
Q 020452 199 HTLSFFVL 206 (326)
Q Consensus 199 ~~l~~lVi 206 (326)
.++++||.
T Consensus 312 p~v~~VI~ 319 (434)
T PRK11192 312 DDVSHVIN 319 (434)
T ss_pred CCCCEEEE
Confidence 78888773
No 370
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.12 E-value=1.7 Score=42.49 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=34.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
|.-+++.+|+|+|||...+--+...+ + .+-+++|++ .-|-..|+...++.+
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~-~----------------------~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENAC-A----------------------NKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-H----------------------CCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 45789999999999976544333322 1 133788876 566677888888776
No 371
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.07 E-value=1.2 Score=36.57 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=20.9
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
...+++||||||.|... ....+.+.++.-+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp 130 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPP 130 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTT
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCC
Confidence 56899999999988643 3556666666554
No 372
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.04 E-value=1.5 Score=36.74 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
+.+++.||.|+|||.....
T Consensus 15 ~~~L~~G~~G~gkt~~a~~ 33 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALA 33 (188)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999976544
No 373
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.02 E-value=0.46 Score=48.48 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=35.9
Q ss_pred eeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 201 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 201 l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
--++|+|+-|.+.+......+..+++..| .+.+.++.|=+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P------------------------~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAP------------------------ENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCC------------------------CCeEEEEEeccCC
Confidence 35899999999998888899999999999 7788888876655
No 374
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.94 E-value=0.95 Score=37.67 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=23.3
Q ss_pred CCeeEEeecchhHhhhCCC--HHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGH--FRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~--~~~i~~il~~l~ 229 (326)
...++||+||+-..++.++ .+.+..+++.-|
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp 128 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERP 128 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCC
Confidence 4689999999998888776 456666666544
No 375
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.90 E-value=1.3 Score=41.80 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l 91 (326)
|.-+++.+++|+|||...+-
T Consensus 82 GslvLI~G~pG~GKStLllq 101 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQ 101 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHH
Confidence 45678899999999966543
No 376
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.87 E-value=1.3 Score=45.10 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=15.4
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~ 92 (326)
-+++.||.|+|||.++.+.
T Consensus 42 AYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4689999999999877543
No 377
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.86 E-value=0.17 Score=44.74 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
...=++++++|||||+.+.
T Consensus 126 kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 126 KRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred cCceEEEECCCCCCchhhH
Confidence 4556788999999999764
No 378
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.85 E-value=1.4 Score=41.92 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=16.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~ 95 (326)
-+++.+|+|+|||....-.+..
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999887554443
No 379
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.43 Score=47.87 Aligned_cols=65 Identities=22% Similarity=0.341 Sum_probs=41.5
Q ss_pred EEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 157 ~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
..||.......+-.++ --|=+-||++.+-|.... .. =-++++||+|.|..+..++--..+++-|.
T Consensus 382 sLGGvrDEAEIRGHRR--TYIGamPGrIiQ~mkka~-----~~-NPv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 382 SLGGVRDEAEIRGHRR--TYIGAMPGKIIQGMKKAG-----VK-NPVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred ecCccccHHHhccccc--cccccCChHHHHHHHHhC-----Cc-CCeEEeechhhccCCCCCChHHHHHhhcC
Confidence 4566655444332222 123356999999886532 11 13699999999997777777777777775
No 380
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.79 E-value=0.29 Score=44.84 Aligned_cols=25 Identities=40% Similarity=0.433 Sum_probs=19.8
Q ss_pred HHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 65 IPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 65 i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+...+..+.++++.+|||||||...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHH
Confidence 3344567899999999999999654
No 381
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=91.76 E-value=2.5 Score=35.18 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCeeEEeecchhHhhhCCC--HHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGH--FRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~--~~~i~~il~~l~ 229 (326)
...++||+||+-..++.++ .+.+..+++.-|
T Consensus 95 ~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp 127 (172)
T PF02572_consen 95 GEYDLVILDEINYAVDYGLLSEEEVLDLLENRP 127 (172)
T ss_dssp TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-
T ss_pred CCCCEEEEcchHHHhHCCCccHHHHHHHHHcCC
Confidence 4689999999999888876 456666666544
No 382
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.76 E-value=1.1 Score=42.75 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+..+.|++.+|+|||.+.
T Consensus 174 t~gSlYVsG~PGtgkt~~l 192 (529)
T KOG2227|consen 174 TSGSLYVSGQPGTGKTALL 192 (529)
T ss_pred cCcceEeeCCCCcchHHHH
Confidence 4568999999999999664
No 383
>PTZ00110 helicase; Provisional
Probab=91.74 E-value=0.83 Score=45.36 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=54.6
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCccccc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
.+.++||.|+++.-|..+++.+... ++.+..++|+....+....+. ....|||+|- .+..+ ++
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~rG----ID 442 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VASRG----LD 442 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhhcC----CC
Confidence 3568999999999999988887653 778889999988765543332 3678999993 34444 77
Q ss_pred CCCeeEEeec
Q 020452 198 LHTLSFFVLD 207 (326)
Q Consensus 198 l~~l~~lViD 207 (326)
+.++++||.-
T Consensus 443 i~~v~~VI~~ 452 (545)
T PTZ00110 443 VKDVKYVINF 452 (545)
T ss_pred cccCCEEEEe
Confidence 8888888853
No 384
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.68 E-value=1.4 Score=43.14 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=14.0
Q ss_pred EEEEcCCCchHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGL 91 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l 91 (326)
+++.||.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999877644
No 385
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.58 E-value=1.1 Score=46.29 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l 91 (326)
..++++.||+|+|||..+-.
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 45899999999999977533
No 386
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=91.46 E-value=1 Score=43.54 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=45.0
Q ss_pred CCCCChHHHHHHHHH---HHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 53 GFKEPTPIQKACIPA---AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~---~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
.|...+|-|-+-.-. .+..+.+.++.+|+|+|||.+.+-.++..-.... ....+.|+.
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p-------------------~~~~KliYC 73 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP-------------------DEHRKLIYC 73 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC-------------------cccceEEEe
Confidence 344556666554433 3467889999999999999887655554332211 123466776
Q ss_pred eCcHHHHHHHHHHHHHH
Q 020452 130 TPTRELALQVTDHLKEV 146 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~ 146 (326)
.-|..-.+....+++.+
T Consensus 74 SRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 74 SRTVPEIEKALEELKRL 90 (755)
T ss_pred cCcchHHHHHHHHHHHH
Confidence 66655555555555544
No 387
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=0.13 Score=46.76 Aligned_cols=19 Identities=42% Similarity=0.476 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
+..|+++.+|||||||+.+
T Consensus 96 ~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeccEEEECCCCCcHHHHH
Confidence 3458999999999999765
No 388
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=91.34 E-value=1.6 Score=43.04 Aligned_cols=68 Identities=19% Similarity=0.467 Sum_probs=52.4
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 125 ~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
++||.+.|+..+..++..+... |+++..++|+.......+.+. ...+|+|+|- ...++ +++.+
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD-----vaaRG----iDi~~ 341 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATD-----VAARG----LDIPD 341 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec-----hhhcc----CCccc
Confidence 7999999999999988777765 789999999999877655544 4789999994 22333 56666
Q ss_pred eeEEe
Q 020452 201 LSFFV 205 (326)
Q Consensus 201 l~~lV 205 (326)
+.+||
T Consensus 342 v~~Vi 346 (513)
T COG0513 342 VSHVI 346 (513)
T ss_pred cceeE
Confidence 76664
No 389
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.27 E-value=0.79 Score=44.63 Aligned_cols=72 Identities=17% Similarity=0.343 Sum_probs=55.9
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccc
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLV 196 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~ 196 (326)
..+.++||.|-|+--|.++...++.. +..+..++|+.+..+....+. ..+.|+|||- ...++ +
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd-----VAaRG----L 405 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD-----VAARG----L 405 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc-----ccccc----C
Confidence 44569999999999999988887775 578899999999877766655 3688999993 22232 6
Q ss_pred cCCCeeEEe
Q 020452 197 ELHTLSFFV 205 (326)
Q Consensus 197 ~l~~l~~lV 205 (326)
++.++++||
T Consensus 406 Di~dV~lVI 414 (519)
T KOG0331|consen 406 DVPDVDLVI 414 (519)
T ss_pred CCccccEEE
Confidence 778888777
No 390
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.23 E-value=2.1 Score=39.33 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
+-+.+.+|+|+|||.....
T Consensus 115 ~vi~lvGpnGsGKTTt~~k 133 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGK 133 (318)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3467899999999977543
No 391
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.18 E-value=0.97 Score=45.47 Aligned_cols=30 Identities=10% Similarity=0.387 Sum_probs=19.1
Q ss_pred cCCCeeEEeecchhHhhhCCCHHHHHHHHHh
Q 020452 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDM 227 (326)
Q Consensus 197 ~l~~l~~lViDEah~l~~~~~~~~i~~il~~ 227 (326)
.+..-+++||||+|.|... ....+...++.
T Consensus 118 ~~~~~KVvIIdea~~Ls~~-a~naLLK~LEe 147 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA-AFNAFLKTLEE 147 (614)
T ss_pred ccCCcEEEEEECcccCCHH-HHHHHHHHHhC
Confidence 3456789999999988542 23344444443
No 392
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.14 E-value=1.2 Score=41.05 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHH---hcC---CcEEEEcCCCchHHHHHHHHH
Q 020452 57 PTPIQKACIPAAA---HQG---KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 57 p~~~Q~~~i~~~l---~~g---~dvlv~apTGsGKT~~~~l~i 93 (326)
.+|||+..|..+. .+| +-.++.||.|.||+..+...+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA 45 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH
Confidence 3678887776653 233 357899999999997764433
No 393
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.10 E-value=0.43 Score=46.59 Aligned_cols=45 Identities=27% Similarity=0.365 Sum_probs=27.3
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHH
Q 020452 49 IYRLGFKEPTPIQKACIPAAAHQGK-DIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 49 l~~~g~~~p~~~Q~~~i~~~l~~g~-dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
|.++|| .+-|.+.+..++...+ -++++||||||||.+. ..++..+
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 344544 3445555545444444 4689999999999765 3345544
No 394
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=91.09 E-value=1.1 Score=43.28 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=53.1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
..++||.|+++.-+..+++.+... ++.+..++|+....+....+. ...+|||||- .+..+ +++
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~rG----iDi 311 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAARG----LDI 311 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHhcC----CCc
Confidence 347999999999999888877654 788999999988765544332 4678999993 34444 677
Q ss_pred CCeeEEee
Q 020452 199 HTLSFFVL 206 (326)
Q Consensus 199 ~~l~~lVi 206 (326)
.++++||.
T Consensus 312 p~v~~VI~ 319 (456)
T PRK10590 312 EELPHVVN 319 (456)
T ss_pred ccCCEEEE
Confidence 78887774
No 395
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=90.81 E-value=1.7 Score=40.38 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
+.+++.||.|+|||...
T Consensus 37 ~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA 53 (355)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999665
No 396
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=90.79 E-value=0.29 Score=49.56 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=35.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 145 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 145 (326)
.++++.||||||||..+++|-+-.. ...+||+=|--|+........++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-------------------------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-------------------------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-------------------------CCCEEEEeCCchHHHHHHHHHHh
Confidence 5899999999999999999876543 11477777877777666555544
No 397
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.78 E-value=0.88 Score=45.71 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=27.5
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+++-+.||+|||---+|..-+..++..+..+.
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~ 651 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLM 651 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhh
Confidence 46678999999999999888888999888776
No 398
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=90.74 E-value=0.42 Score=51.64 Aligned_cols=62 Identities=24% Similarity=0.424 Sum_probs=48.1
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc
Q 020452 69 AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 148 (326)
...+++++|.|..|||||++..--++..++... ....-++|+++-|++-+.++..++..-..
T Consensus 13 ~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~------------------~~~v~~ILvvTFT~aAa~Emk~RI~~~L~ 74 (1139)
T COG1074 13 SPPGQSVLVEASAGTGKTFVLAERVLRLLLEGG------------------PLDVDEILVVTFTKAAAAEMKERIRDRLK 74 (1139)
T ss_pred cCCCCcEEEEEcCCCCchhHHHHHHHHHHhhcC------------------CCChhHeeeeeccHHHHHHHHHHHHHHHH
Confidence 356789999999999999998887887776531 01123799999999999998888776554
No 399
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=90.70 E-value=3.2 Score=35.13 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=30.5
Q ss_pred CEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 175 ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 175 ~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
-++|-.+..+.+.+.... ....++.|.+|||+-+.+ ..-..+..+...+.
T Consensus 61 A~~i~~~~~i~~~i~~~~----~~~~~~~v~IDEaQF~~~-~~v~~l~~lad~lg 110 (201)
T COG1435 61 AVVIPSDTDIFDEIAALH----EKPPVDCVLIDEAQFFDE-ELVYVLNELADRLG 110 (201)
T ss_pred ceecCChHHHHHHHHhcc----cCCCcCEEEEehhHhCCH-HHHHHHHHHHhhcC
Confidence 466667777777775431 112278999999996543 33455555555443
No 400
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.65 E-value=0.8 Score=47.51 Aligned_cols=18 Identities=28% Similarity=0.171 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
+..+++.+|+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999665
No 401
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.62 E-value=1.1 Score=42.91 Aligned_cols=24 Identities=25% Similarity=0.062 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~i 93 (326)
..|.=+++.|++|+|||...+--+
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia 215 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIA 215 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHH
Confidence 345567889999999996654433
No 402
>PF12846 AAA_10: AAA-like domain
Probab=90.53 E-value=0.48 Score=42.53 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=19.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLL 98 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~ 98 (326)
.++++.|+||+|||.... .++..+.
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~ 26 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLI 26 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHH
Confidence 678999999999997766 4444443
No 403
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.50 E-value=1.3 Score=43.09 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=55.4
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+..+||.|+|+.-+.++++.+... ++.+..++|+....+..... ....+|||+|- .+..+ +++
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~-----~~~~G----ID~ 292 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNL----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV-----AFGMG----INK 292 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhc----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec-----hhhcc----CCc
Confidence 446799999999999999888765 78899999998876654333 35789999994 23333 677
Q ss_pred CCeeEEeecch
Q 020452 199 HTLSFFVLDEA 209 (326)
Q Consensus 199 ~~l~~lViDEa 209 (326)
.++++||.-..
T Consensus 293 p~V~~VI~~~~ 303 (470)
T TIGR00614 293 PDVRFVIHYSL 303 (470)
T ss_pred ccceEEEEeCC
Confidence 78888886544
No 404
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=90.45 E-value=1.3 Score=44.16 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=15.3
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+++.||.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987755
No 405
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=90.43 E-value=2.3 Score=40.30 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=18.2
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~ 90 (326)
-+|.++++.++||+||++.+.
T Consensus 99 p~~~~vLi~GetGtGKel~A~ 119 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFAR 119 (403)
T ss_pred CCCCcEEEecCCCccHHHHHH
Confidence 368899999999999997763
No 406
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.39 E-value=1.5 Score=40.48 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=16.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHH
Q 020452 76 IGAAETGSGKTLAFGLPIMQRLLE 99 (326)
Q Consensus 76 lv~apTGsGKT~~~~l~il~~~~~ 99 (326)
++.++.|+|||.+....++..+..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~ 24 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALT 24 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHS
T ss_pred CCcCCccccHHHHHHHHHHHHHhh
Confidence 467899999999987777766543
No 407
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=90.30 E-value=1.2 Score=43.20 Aligned_cols=72 Identities=15% Similarity=0.307 Sum_probs=53.3
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.|+|+.-+..+++.+... ++.+..++|+....+....+. ...+|+|||- .+..+ .++.
T Consensus 243 ~~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v~~rG----iDi~ 309 (460)
T PRK11776 243 ESCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----VAARG----LDIK 309 (460)
T ss_pred CceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----ccccc----cchh
Confidence 47999999999999999888765 788999999998765544332 3678999993 33333 5667
Q ss_pred CeeEEeecc
Q 020452 200 TLSFFVLDE 208 (326)
Q Consensus 200 ~l~~lViDE 208 (326)
+++++|.-+
T Consensus 310 ~v~~VI~~d 318 (460)
T PRK11776 310 ALEAVINYE 318 (460)
T ss_pred cCCeEEEec
Confidence 777777543
No 408
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.21 E-value=1.5 Score=41.53 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|+.+++.+|+|+|||...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred CCCCEEEEECCCCCChhHHH
Confidence 46889999999999999643
No 409
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=90.12 E-value=0.45 Score=40.69 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 63 ACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 63 ~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+|+..+...++++++.+|.|+|||+.+
T Consensus 13 rAL~iAAaG~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 13 RALEIAAAGGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp HHHHHHHHCC--EEEES-CCCTHHHHH
T ss_pred HHHHHHHcCCCCeEEECCCCCCHHHHH
Confidence 334333347899999999999999765
No 410
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.12 E-value=2.1 Score=36.42 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
.|.-+.+.+|+|+|||...+-.+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~ 35 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN 35 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788999999999776544433
No 411
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.97 E-value=0.23 Score=41.35 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 163 TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 163 ~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
.....+.....++|||++..-|++-..........+. -.+|||||||.+.+
T Consensus 109 PY~~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~-~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 109 PYYLARELAKNADIVICNYNYLFDPSIRKSLFGIDLK-DNIVIFDEAHNLED 159 (174)
T ss_dssp HHHHHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CC-CEEEEETTGGGCGG
T ss_pred hhHHHHHhcccCCEEEeCHHHHhhHHHHhhhcccccc-CcEEEEecccchHH
Confidence 3334445556789999999887654322110012233 36899999998875
No 412
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=89.92 E-value=2 Score=36.13 Aligned_cols=23 Identities=35% Similarity=0.238 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~ 97 (326)
++|....|-|||.+++--++..+
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~ 53 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL 53 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh
Confidence 67777889999999887777665
No 413
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.71 E-value=1 Score=47.23 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
.+++.||||+|||..+-
T Consensus 598 ~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 598 VFLLVGPSGVGKTETAL 614 (852)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999997764
No 414
>PRK10867 signal recognition particle protein; Provisional
Probab=89.69 E-value=1.4 Score=42.32 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=15.6
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIM 94 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il 94 (326)
+++++++|+|||.+..-.+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 67899999999987654443
No 415
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=89.59 E-value=0.34 Score=46.33 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 63 ACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 63 ~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+++......|+|+++.+|.|||||+.+
T Consensus 189 rAleiAAAGgHnLl~~GpPGtGKTmla 215 (490)
T COG0606 189 RALEIAAAGGHNLLLVGPPGTGKTMLA 215 (490)
T ss_pred HHHHHHHhcCCcEEEecCCCCchHHhh
Confidence 344444457899999999999999864
No 416
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.57 E-value=2.5 Score=41.43 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=71.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcC
Q 020452 81 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG 160 (326)
Q Consensus 81 TGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~ 160 (326)
.++||+-.-++++.+.+.. +-.|-++|.+-+.+-|.|.+..+.. ..++.+..++|+
T Consensus 366 vF~gse~~K~lA~rq~v~~---------------------g~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e 421 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVAS---------------------GFKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGE 421 (593)
T ss_pred eeeecchhHHHHHHHHHhc---------------------cCCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecc
Confidence 4677777777766665532 2356799999999999999998873 357889999999
Q ss_pred CCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchh
Q 020452 161 MSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 161 ~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah 210 (326)
.+.......+. ....++||| +++.+| .+|.++.+||-++.-
T Consensus 422 ~~~~qrde~~~~FR~g~IwvLicT-----dll~RG----iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 422 RSQKQRDETMERFRIGKIWVLICT-----DLLARG----IDFKGVNLVINYDFP 466 (593)
T ss_pred cchhHHHHHHHHHhccCeeEEEeh-----hhhhcc----ccccCcceEEecCCC
Confidence 77655433332 356899998 355555 789999999987654
No 417
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.53 E-value=0.38 Score=42.96 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.1
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l 91 (326)
..|+++++.||+|+|||..+..
T Consensus 19 ~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred hcCCeEEEEcCCCCCHHHHHHH
Confidence 5789999999999999987643
No 418
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=89.52 E-value=0.89 Score=40.79 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.1
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
++++.+|+|.|||..+.+
T Consensus 54 HvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred eEEeeCCCCCcHHHHHHH
Confidence 789999999999966543
No 419
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.42 E-value=2.1 Score=43.13 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
+-+++.||+|+|||.++-+
T Consensus 111 ~illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKI 129 (637)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3489999999999976543
No 420
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=89.38 E-value=0.51 Score=42.72 Aligned_cols=13 Identities=38% Similarity=0.363 Sum_probs=10.9
Q ss_pred EEEEcCCCchHHH
Q 020452 75 IIGAAETGSGKTL 87 (326)
Q Consensus 75 vlv~apTGsGKT~ 87 (326)
.+|-||||+||+-
T Consensus 90 ~~VYGPTG~GKSq 102 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ 102 (369)
T ss_pred EEEECCCCCCHHH
Confidence 3678999999983
No 421
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=89.07 E-value=0.51 Score=47.37 Aligned_cols=47 Identities=15% Similarity=0.345 Sum_probs=32.6
Q ss_pred EEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 177 lV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+=+-||++.+.|..-. ..+ -++.+||+|.+.....++--..+++.|.
T Consensus 488 VGAMPGkiIq~LK~v~-----t~N-PliLiDEvDKlG~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 488 VGAMPGKIIQCLKKVK-----TEN-PLILIDEVDKLGSGHQGDPASALLELLD 534 (906)
T ss_pred eccCChHHHHHHHhhC-----CCC-ceEEeehhhhhCCCCCCChHHHHHHhcC
Confidence 3356999999986432 222 3789999999985445666667777775
No 422
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.01 E-value=1.9 Score=41.99 Aligned_cols=73 Identities=12% Similarity=0.306 Sum_probs=54.2
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
..++||.|++++-++.+++.+... ++.+..++|+....+....+. ....||||| +.+..+ +++
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT-----~~l~~G----IDi 401 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKD----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT-----DVAGRG----IHI 401 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEc-----cccccC----Ccc
Confidence 348999999999998888777554 778889999988766544332 467899999 344444 778
Q ss_pred CCeeEEeecc
Q 020452 199 HTLSFFVLDE 208 (326)
Q Consensus 199 ~~l~~lViDE 208 (326)
.+++++|.-.
T Consensus 402 ~~v~~VI~~~ 411 (475)
T PRK01297 402 DGISHVINFT 411 (475)
T ss_pred cCCCEEEEeC
Confidence 8888888643
No 423
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=88.96 E-value=1.4 Score=44.68 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++-|.+++.. ....++|.|..|||||.+..--+...+.... -..-+++.++=|+..
T Consensus 2 ~Ln~~Q~~av~~---~~gp~lV~AGaGsGKT~vlt~Ria~li~~~~-------------------v~p~~Il~vTFTnkA 59 (655)
T COG0210 2 KLNPEQREAVLH---PDGPLLVLAGAGSGKTRVLTERIAYLIAAGG-------------------VDPEQILAITFTNKA 59 (655)
T ss_pred CCCHHHHHHHhc---CCCCeEEEECCCCCchhhHHHHHHHHHHcCC-------------------cChHHeeeeechHHH
Confidence 578999999854 3678888999999999987666655543211 112258888888888
Q ss_pred HHHHHHHHHHHHc
Q 020452 136 ALQVTDHLKEVAK 148 (326)
Q Consensus 136 ~~Q~~~~l~~~~~ 148 (326)
|.++.+++..+..
T Consensus 60 A~em~~Rl~~~~~ 72 (655)
T COG0210 60 AAEMRERLLKLLG 72 (655)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888765
No 424
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=88.93 E-value=1.7 Score=43.95 Aligned_cols=70 Identities=21% Similarity=0.394 Sum_probs=52.5
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.|+|+.-+.++++.+... ++.+..++|+.+.......+. ...+|||+|- ++..+ +++.
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd-----v~arG----IDip 312 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQALREQTLERLKDGRLDILIATD-----VAARG----LDVE 312 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc-----hHhcC----CCcc
Confidence 47999999999999988888764 778889999988766544332 4788999993 34443 6677
Q ss_pred CeeEEee
Q 020452 200 TLSFFVL 206 (326)
Q Consensus 200 ~l~~lVi 206 (326)
++++||.
T Consensus 313 ~V~~VI~ 319 (629)
T PRK11634 313 RISLVVN 319 (629)
T ss_pred cCCEEEE
Confidence 7777764
No 425
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.92 E-value=0.2 Score=50.49 Aligned_cols=158 Identities=19% Similarity=0.263 Sum_probs=87.8
Q ss_pred CChHHHHHHHHHHHh-------cCC--cEEEEcCC--CchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCe
Q 020452 56 EPTPIQKACIPAAAH-------QGK--DIIGAAET--GSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 124 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~-------~g~--dvlv~apT--GsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
.++..|-+++-.+.+ +|. -+++--.. |-|+|.+. .|++..++. ..
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAg--iIfeNyLkG----------------------RK 319 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAG--IIFENYLKG----------------------RK 319 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEE--EEehhhhcc----------------------cc
Confidence 567788888755421 222 24554334 44555443 344444433 34
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEc----CCCHHHHHHHHhcCCCEEEeCcHHHHHHHhc-CCcccccC-
Q 020452 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVG----GMSTEKQERLLKARPELVVGTPGRLWELMSG-GEKHLVEL- 198 (326)
Q Consensus 125 ~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g----~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~-~~~~~~~l- 198 (326)
++|++.=+..|-.+..+.+..+.. .++.|..+.- ..+.+.. ... .-.|+.+|...|.--... +......+
T Consensus 320 rAlW~SVSsDLKfDAERDL~DigA-~~I~V~alnK~KYakIss~en-~n~--krGViFaTYtaLIGEs~~~~~kyrtR~r 395 (1300)
T KOG1513|consen 320 RALWFSVSSDLKFDAERDLRDIGA-TGIAVHALNKFKYAKISSKEN-TNT--KRGVIFATYTALIGESQGKGGKYRTRFR 395 (1300)
T ss_pred eeEEEEeccccccchhhchhhcCC-CCccceehhhccccccccccc-CCc--cceeEEEeeHhhhhhccccCchHHHHHH
Confidence 899999999998888888887744 2455544321 1111100 001 235899998776422211 10111111
Q ss_pred --------CCeeEEeecchhHhhh---------CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEE
Q 020452 199 --------HTLSFFVLDEADRMIE---------NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261 (326)
Q Consensus 199 --------~~l~~lViDEah~l~~---------~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~ 261 (326)
+.=.++||||||.--+ ...+..+..+-..|| +.+++..
T Consensus 396 QllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-------------------------~ARVVYA 450 (1300)
T KOG1513|consen 396 QLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-------------------------NARVVYA 450 (1300)
T ss_pred HHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC-------------------------CceEEEe
Confidence 1126799999996532 112566666666775 5789999
Q ss_pred eeecc
Q 020452 262 SATIA 266 (326)
Q Consensus 262 SATl~ 266 (326)
|||=.
T Consensus 451 SATGA 455 (1300)
T KOG1513|consen 451 SATGA 455 (1300)
T ss_pred eccCC
Confidence 99964
No 426
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=88.84 E-value=0.47 Score=40.37 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=16.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
-+++++|||||||... ..++..+
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 3688999999999764 3344443
No 427
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=88.72 E-value=0.53 Score=47.51 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=35.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 145 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 145 (326)
..++++.||||+|||..+++|-+-.. +.-+||+=|..|+...+....++
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~-------------------------~gS~VV~DpKgEl~~~Ta~~R~~ 272 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKW-------------------------GGPLVVLDPSTEVAPMVSEHRRD 272 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcC-------------------------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 46899999999999999999975422 12467777888877666655544
No 428
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.65 E-value=2.8 Score=43.25 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l 91 (326)
..++++.||+|+|||...-.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 35899999999999977543
No 429
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.59 E-value=4.2 Score=39.79 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHH---Hh----cC----CcEEEEcCCCchHHHHH
Q 020452 39 LRLHPLLMKSIYRLGFKEPTPIQKACIPAA---AH----QG----KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 39 l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~---l~----~g----~dvlv~apTGsGKT~~~ 89 (326)
+|.+++-++.+...|.-.-.+.-.+.+..- ++ +. ..+++.+|.|||||..+
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLA 555 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALA 555 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHH
Confidence 477888888777766543333333333220 01 11 26899999999999654
No 430
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=88.58 E-value=1.3 Score=44.80 Aligned_cols=54 Identities=22% Similarity=0.256 Sum_probs=35.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH--HHHHHHHHHHHHHc
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE--LALQVTDHLKEVAK 148 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~--L~~Q~~~~l~~~~~ 148 (326)
.+++++.|+||+|||..+...+.+.+ .. +..++++=|-.. |...+...++....
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i-~~----------------------g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDI-RR----------------------GDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH-Hc----------------------CCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 46899999999999987754444443 21 235666666654 77777776666643
No 431
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=88.57 E-value=3 Score=38.34 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=28.5
Q ss_pred CCCChHHHHHHHHHHHh---cCC---cEEEEcCCCchHHHHHHH
Q 020452 54 FKEPTPIQKACIPAAAH---QGK---DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 54 ~~~p~~~Q~~~i~~~l~---~g~---dvlv~apTGsGKT~~~~l 91 (326)
+..++|||..++..+.. +|+ -+++.||.|+||+..+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 34678999999877632 333 488999999999976644
No 432
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=88.55 E-value=4.2 Score=38.51 Aligned_cols=54 Identities=19% Similarity=0.165 Sum_probs=31.1
Q ss_pred cccccccCC-CCHHHHHHHHHCCCCCChHHHHHHHHHH--HhcCCcEEEEcCCCchHHHH
Q 020452 32 EFDAWNELR-LHPLLMKSIYRLGFKEPTPIQKACIPAA--AHQGKDIIGAAETGSGKTLA 88 (326)
Q Consensus 32 ~~~~f~~l~-l~~~i~~~l~~~g~~~p~~~Q~~~i~~~--l~~g~dvlv~apTGsGKT~~ 88 (326)
.-..|++|. +++.-...+..- .+.++=.++|..+ +-.|+..++.||.|+|||..
T Consensus 129 ~r~~f~~l~p~~p~~R~~le~~---~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 129 NRPLFENLTPLYPNERLRLETG---NPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred CCCCcccCCCCChhhcccccCC---CCcccceeeeeeecccccCceEEEeCCCCCChhHH
Confidence 445677773 444333233220 1334444555443 13688999999999999954
No 433
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.42 E-value=2.4 Score=42.86 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
=++++||.|-|||..+
T Consensus 328 ilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLA 343 (877)
T ss_pred eEEeecCCCCChhHHH
Confidence 3788999999999665
No 434
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=88.29 E-value=2 Score=43.53 Aligned_cols=92 Identities=20% Similarity=0.356 Sum_probs=61.1
Q ss_pred CeEEEEEeCcHH--------HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhc
Q 020452 123 HLRALIITPTRE--------LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 123 ~~~~lil~Pt~~--------L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~ 190 (326)
+.+++|++|+.+ -+.++++.+...+ .+.++..++|+.+..+....+. ...+|+|+|. .+..
T Consensus 448 g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie~ 520 (630)
T TIGR00643 448 GRQAYVVYPLIEESEKLDLKAAEALYERLKKAF--PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VIEV 520 (630)
T ss_pred CCcEEEEEccccccccchHHHHHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----eeec
Confidence 458999999763 3445555555543 3678999999988765544332 4689999995 3444
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+ .++.+++++|+..+++.. ...+.....+..
T Consensus 521 G----vDiP~v~~VIi~~~~r~g----ls~lhQ~~GRvG 551 (630)
T TIGR00643 521 G----VDVPNATVMVIEDAERFG----LSQLHQLRGRVG 551 (630)
T ss_pred C----cccCCCcEEEEeCCCcCC----HHHHHHHhhhcc
Confidence 4 778899999988887532 234444555444
No 435
>PRK08760 replicative DNA helicase; Provisional
Probab=88.25 E-value=2.1 Score=41.75 Aligned_cols=130 Identities=20% Similarity=0.134 Sum_probs=61.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 150 (326)
.|.=+++.|.+|.|||...+-.+....... +..++|++. -.-..|+..++.......
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~----------------------g~~V~~fSl-EMs~~ql~~Rl~a~~s~i 284 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKS----------------------KKGVAVFSM-EMSASQLAMRLISSNGRI 284 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhc----------------------CCceEEEec-cCCHHHHHHHHHHhhCCC
Confidence 445567789999999965544333322111 224555543 223445555554443222
Q ss_pred CcEEEEEEcCCCHHHH------HHHHhcCCCEEEe-----CcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC----
Q 020452 151 NVRVVPIVGGMSTEKQ------ERLLKARPELVVG-----TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN---- 215 (326)
Q Consensus 151 ~~~v~~~~g~~~~~~~------~~~~~~~~~IlV~-----Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~---- 215 (326)
...- ...|.....+. ...+. +..+.|. |++.+...++.- ..-..+++||||=.+.|...
T Consensus 285 ~~~~-i~~g~l~~~e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l----~~~~~~~lVvIDyLql~~~~~~~~ 358 (476)
T PRK08760 285 NAQR-LRTGALEDEDWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRL----KREHDLGLIVIDYLQLMSVPGNSE 358 (476)
T ss_pred cHHH-HhcCCCCHHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHH----HHhcCCCEEEEecHHhcCCCCCCc
Confidence 2111 11233232221 11122 2345443 344554444321 11235889999999987422
Q ss_pred CCHHHHHHHHHhCC
Q 020452 216 GHFRELQSIIDMLP 229 (326)
Q Consensus 216 ~~~~~i~~il~~l~ 229 (326)
.....+..+.+.|+
T Consensus 359 ~r~~ei~~Isr~LK 372 (476)
T PRK08760 359 NRATEISEISRSLK 372 (476)
T ss_pred ccHHHHHHHHHHHH
Confidence 23345555555544
No 436
>PRK05973 replicative DNA helicase; Provisional
Probab=88.24 E-value=1.1 Score=39.47 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=33.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
..|.-+++.|++|+|||...+-.+.+.... +-+++|++-- +-..|+.+.+..+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-----------------------Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKS-----------------------GRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-----------------------CCeEEEEEEe-CCHHHHHHHHHHc
Confidence 356678889999999997665444443311 3367777532 2356777777665
No 437
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=88.21 E-value=0.39 Score=45.63 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=34.8
Q ss_pred ccccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 31 TEFDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~---g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
.+-.+|++++--+...+.++.. .+..|.-++..-+ ..++.+++.||+|+|||..+
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl----~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI----DPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC----CCCceEEEECCCCCCHHHHH
Confidence 3445788887777766666552 2333322222221 24678999999999999765
No 438
>PRK06904 replicative DNA helicase; Validated
Probab=88.15 E-value=3.6 Score=40.04 Aligned_cols=132 Identities=21% Similarity=0.205 Sum_probs=63.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 149 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~ 149 (326)
..|.=+++.|.+|.|||... +-+....... .+..++|++. -.-..|+..++-....
T Consensus 219 ~~G~LiiIaarPg~GKTafa-lnia~~~a~~---------------------~g~~Vl~fSl-EMs~~ql~~Rlla~~s- 274 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFA-MNLCENAAMA---------------------SEKPVLVFSL-EMPAEQIMMRMLASLS- 274 (472)
T ss_pred CCCcEEEEEeCCCCChHHHH-HHHHHHHHHh---------------------cCCeEEEEec-cCCHHHHHHHHHHhhC-
Confidence 34555677899999999654 4344333211 1224666543 2345555555544332
Q ss_pred CCcEEEEE-Ec-CCCHHHHH------HHHhcCCCEEEe-----CcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCC
Q 020452 150 INVRVVPI-VG-GMSTEKQE------RLLKARPELVVG-----TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216 (326)
Q Consensus 150 ~~~~v~~~-~g-~~~~~~~~------~~~~~~~~IlV~-----Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~ 216 (326)
++....+ .| ..+..+.. ..+...+.+.|- |+..+...++... .....++++|||-.+.|...+
T Consensus 275 -~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~---~~~~~~~lvvIDYLqli~~~~ 350 (472)
T PRK06904 275 -RVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY---RENGGLSLIMVDYLQLMRAPG 350 (472)
T ss_pred -CCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH---HhCCCCCEEEEecHHhcCCCC
Confidence 2222111 23 22322211 122223445552 4445444332210 111258899999999885332
Q ss_pred ----CHHHHHHHHHhCC
Q 020452 217 ----HFRELQSIIDMLP 229 (326)
Q Consensus 217 ----~~~~i~~il~~l~ 229 (326)
....+..+.+.|+
T Consensus 351 ~~~~r~~ei~~isr~LK 367 (472)
T PRK06904 351 FEDNRTLEIAEISRSLK 367 (472)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 2344555555554
No 439
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.14 E-value=1.1 Score=42.96 Aligned_cols=21 Identities=33% Similarity=0.061 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|.-+++.|++|+|||...+-
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~ 214 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALN 214 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHH
Confidence 445678899999999955543
No 440
>PTZ00424 helicase 45; Provisional
Probab=88.09 E-value=2.2 Score=40.35 Aligned_cols=72 Identities=18% Similarity=0.347 Sum_probs=53.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
..++||.|+++.-+..+++.+... ++.+..++|+....++...+. ...+|+|||- .+..| .++
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l~~G----iDi 333 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHER----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LLARG----IDV 333 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----cccCC----cCc
Confidence 347899999999888888777654 778999999988766544332 4689999993 34444 777
Q ss_pred CCeeEEeec
Q 020452 199 HTLSFFVLD 207 (326)
Q Consensus 199 ~~l~~lViD 207 (326)
.+++++|.-
T Consensus 334 p~v~~VI~~ 342 (401)
T PTZ00424 334 QQVSLVINY 342 (401)
T ss_pred ccCCEEEEE
Confidence 888888853
No 441
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=88.07 E-value=0.81 Score=40.21 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=18.8
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHH
Q 020452 69 AHQGKDIIGAAETGSGKTLAFGLPIMQR 96 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~~l~il~~ 96 (326)
+...-++++.|++|||||. +++-++..
T Consensus 10 ~~~~fr~viIG~sGSGKT~-li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTT-LIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHH-HHHHHHHh
Confidence 3334588999999999994 44545543
No 442
>PRK04328 hypothetical protein; Provisional
Probab=88.01 E-value=0.87 Score=40.28 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=33.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
.|..+++.+++|+|||...+-.+.+.+.+ +-+++|+. +.+-..++.+.++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~-----------------------ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-----------------------GEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc-----------------------CCcEEEEE-eeCCHHHHHHHHHHc
Confidence 46678999999999996654444443311 22577776 444555666666665
No 443
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=2.6 Score=41.19 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
+-+++.+|+|+|||+.+
T Consensus 338 KGVLLvGPPGTGKTlLA 354 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTLLA 354 (752)
T ss_pred CceEEeCCCCCchhHHH
Confidence 47999999999999654
No 444
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=87.84 E-value=7.1 Score=39.70 Aligned_cols=78 Identities=24% Similarity=0.401 Sum_probs=57.1
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCccccc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
.+.++||.|+|+.-+..+.+.+... ++++..++|+.........+ ....+|+|||- .+.+| ++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~-----~L~rG----fd 511 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----LLREG----LD 511 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC-----HHhCC----cc
Confidence 3568999999999888888777664 78888999987765443322 23578888882 44554 67
Q ss_pred CCCeeEEeecchhHh
Q 020452 198 LHTLSFFVLDEADRM 212 (326)
Q Consensus 198 l~~l~~lViDEah~l 212 (326)
+..++++|+=|++..
T Consensus 512 lp~v~lVii~d~eif 526 (652)
T PRK05298 512 IPEVSLVAILDADKE 526 (652)
T ss_pred ccCCcEEEEeCCccc
Confidence 888999988777743
No 445
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.83 E-value=5.5 Score=36.20 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=29.9
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-----cEEEEcCCCchHHHHH
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK-----DIIGAAETGSGKTLAF 89 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~-----dvlv~apTGsGKT~~~ 89 (326)
+|=-.|++.-=-+-..++|++.=+ -|+ -+|.++ .|+ -+++-+|+|+||+..+
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVI---LPI---KFPqlF-tGkR~PwrgiLLyGPPGTGKSYLA 183 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVI---LPI---KFPQLF-TGKRKPWRGILLYGPPGTGKSYLA 183 (439)
T ss_pred CCCCchhhhccchhHHHHHHhhee---ecc---cchhhh-cCCCCcceeEEEeCCCCCcHHHHH
Confidence 334456666555555666655211 000 134554 454 4899999999998544
No 446
>PRK05748 replicative DNA helicase; Provisional
Probab=87.77 E-value=3.1 Score=40.25 Aligned_cols=20 Identities=35% Similarity=0.139 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.|.-+++.|++|.|||...+
T Consensus 202 ~G~livIaarpg~GKT~~al 221 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFAL 221 (448)
T ss_pred CCceEEEEeCCCCCchHHHH
Confidence 44567889999999996554
No 447
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=87.76 E-value=5 Score=30.68 Aligned_cols=75 Identities=20% Similarity=0.376 Sum_probs=52.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH---h-cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---K-ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.+++..-+.++++.+.. .+..+..++|+.......... . ....|+++|.. +..+ .++
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~-----~~~G----~d~ 94 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV-----IARG----IDL 94 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh-----hhcC----cCh
Confidence 34799999999999988888876 367888899988755443322 2 34578888852 2222 556
Q ss_pred CCeeEEeecchh
Q 020452 199 HTLSFFVLDEAD 210 (326)
Q Consensus 199 ~~l~~lViDEah 210 (326)
...+.+|+.+.+
T Consensus 95 ~~~~~vi~~~~~ 106 (131)
T cd00079 95 PNVSVVINYDLP 106 (131)
T ss_pred hhCCEEEEeCCC
Confidence 667778777664
No 448
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=87.62 E-value=1.4 Score=47.90 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=45.1
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 148 (326)
.-.++++|.|+.|||||.+..--++..+... ...-++++|+-|+.-+.++.+++...+.
T Consensus 8 dp~~~~~~~a~agsgkt~~l~~~~~~~~~~~--------------------~~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 8 DPKTSAWVSANAGSGKTHVLTQRVIRLLLNG--------------------VPPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHcC--------------------CCCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 3457899999999999988766666655321 1123799999999999998888877654
No 449
>PTZ00293 thymidine kinase; Provisional
Probab=87.60 E-value=3.6 Score=35.40 Aligned_cols=18 Identities=28% Similarity=0.156 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
|+=-++.||.++|||.-.
T Consensus 4 G~i~vi~GpMfSGKTteL 21 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTEL 21 (211)
T ss_pred eEEEEEECCCCChHHHHH
Confidence 444578999999999543
No 450
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.54 E-value=3.8 Score=43.14 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=22.2
Q ss_pred eEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 202 SFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 202 ~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
-+||||++|.+.+......+..++..++
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~ 150 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQP 150 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCC
Confidence 4799999999865555667888888877
No 451
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=87.52 E-value=9.4 Score=31.92 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=23.4
Q ss_pred CCeeEEeecchhHhhhCCC--HHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGH--FRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~--~~~i~~il~~l~ 229 (326)
...++||+||+-..++.++ .+.+..+++.-|
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp 146 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRP 146 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCC
Confidence 4589999999999888876 455666666544
No 452
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=87.47 E-value=1.6 Score=47.23 Aligned_cols=75 Identities=15% Similarity=0.318 Sum_probs=53.4
Q ss_pred CeEEEEEeCcH---HHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 123 HLRALIITPTR---ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 123 ~~~~lil~Pt~---~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
+..+||.|+++ +-|.++++.++.. |+++..++|+..............+|+|||... .+.+.+| +++.
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~~----g~~a~~lhg~~~~~~l~~Fr~G~~~vLVata~~-tdv~aRG----IDip 396 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLENH----GVKAVAYHATKPKEDYEKFAEGEIDVLIGVASY-YGTLVRG----LDLP 396 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHhC----CceEEEEeCCCCHHHHHHHHcCCCCEEEEeccc-cCccccc----CCCC
Confidence 34689999999 8888877777654 889999999986555555555688999998411 2334443 5666
Q ss_pred C-eeEEee
Q 020452 200 T-LSFFVL 206 (326)
Q Consensus 200 ~-l~~lVi 206 (326)
+ ++++|+
T Consensus 397 ~~V~~vI~ 404 (1171)
T TIGR01054 397 ERVRYAVF 404 (1171)
T ss_pred ccccEEEE
Confidence 6 677776
No 453
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=87.45 E-value=2.4 Score=42.70 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=43.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTP 181 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp 181 (326)
+.++||.|+|+.-+.++++.+... ++.+..++|+.+........ ....+|+|+|.
T Consensus 236 ~~~~IIFc~tr~~~e~la~~L~~~----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~ 294 (607)
T PRK11057 236 GKSGIIYCNSRAKVEDTAARLQSR----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV 294 (607)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEec
Confidence 447899999999999999888765 78899999998876554333 24678999995
No 454
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=87.45 E-value=2 Score=43.28 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=38.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH--HHHHHHHHHHHHHHc
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR--ELALQVTDHLKEVAK 148 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~--~L~~Q~~~~l~~~~~ 148 (326)
..++++.|+||+|||..+...+.+.+.. +..++++=|-. ++...++..++.+.+
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~-----------------------g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR-----------------------GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc-----------------------CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 4689999999999998877666555421 33677777766 466666776766654
No 455
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=87.41 E-value=3.3 Score=34.09 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=13.9
Q ss_pred EEEEcCCCchHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGL 91 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l 91 (326)
+++.+++|+|||.....
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57889999999977544
No 456
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=87.41 E-value=2.6 Score=42.26 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=43.1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTP 181 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp 181 (326)
+.++||.|+|+..+.++++.+... ++.+..++|+.+........ ....+|||+|-
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~ 282 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQ----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATN 282 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEec
Confidence 347899999999999999888654 78889999998876554433 24678999994
No 457
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.39 E-value=0.65 Score=45.82 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=34.0
Q ss_pred ccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYR---LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~---~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l 91 (326)
-.+|++.|=-+.+...|+. ..+++|..++.--+ ....-+++++|+|+|||+.+-.
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi----~~PsGvLL~GPPGCGKTLlAKA 564 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGI----DAPSGVLLCGPPGCGKTLLAKA 564 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCC----CCCCceEEeCCCCccHHHHHHH
Confidence 3467777766666665544 23333333333322 2356799999999999987643
No 458
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=87.39 E-value=0.59 Score=47.19 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=34.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 142 (326)
..++++.||||||||..+++|-+-.. +..+||+=|-.|+.......
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL~~-------------------------~~S~VV~D~KGE~~~~Tag~ 220 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLLSW-------------------------GHSSVITDLKGELWALTAGW 220 (636)
T ss_pred CceEEEEecCCCCCceEEEccchhhC-------------------------CCCEEEEeCcHHHHHHHHHH
Confidence 36899999999999999998877532 22577777888876554444
No 459
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=87.36 E-value=0.99 Score=42.73 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=19.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLE 99 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~ 99 (326)
..+++++.|.||||||. ++..++..+..
T Consensus 14 e~~~~li~G~~GsGKT~-~i~~ll~~~~~ 41 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQ-AIRHLLDQIRA 41 (386)
T ss_dssp GGG-EEEEE-TTSSHHH-HHHHHHHHHHH
T ss_pred hhCcEEEECCCCCCHHH-HHHHHHHHHHH
Confidence 56899999999999996 44666666543
No 460
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=87.35 E-value=1.3 Score=41.08 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHh---cCC---cEEEEcCCCchHHHHHHHH
Q 020452 57 PTPIQKACIPAAAH---QGK---DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 57 p~~~Q~~~i~~~l~---~g~---dvlv~apTGsGKT~~~~l~ 92 (326)
.+|||+..|..+.+ +|+ -.++.||.|.||+..+...
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~ 44 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHH
Confidence 46788888876532 333 5789999999999776443
No 461
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=87.16 E-value=0.82 Score=45.95 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=35.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
.++++.||||+|||..+++|-+-.. +.-+||+=|..|+.......-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~-------------------------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY-------------------------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC-------------------------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 6899999999999999999964422 124777778878776655544443
No 462
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.08 E-value=0.84 Score=42.20 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=35.7
Q ss_pred ccccccccCC-CCHHHHHHHHH---CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 31 TEFDAWNELR-LHPLLMKSIYR---LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 31 ~~~~~f~~l~-l~~~i~~~l~~---~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
.|-.+|++.| |.++|. .+++ +..++|--+++--| ...+-+++.+|+|||||+.+
T Consensus 145 ~PdvtY~dIGGL~~Qi~-EirE~VELPL~~PElF~~~GI----~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQ-EIREVVELPLKNPELFEELGI----DPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCCChhhccCHHHHHH-HHHHHhcccccCHHHHHHcCC----CCCCceEeeCCCCCcHHHHH
Confidence 4455788885 444444 4543 45555555555443 45688999999999999765
No 463
>PRK08939 primosomal protein DnaI; Reviewed
Probab=87.07 E-value=1.3 Score=40.61 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l 91 (326)
++.+++.|++|+|||.....
T Consensus 156 ~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46899999999999976643
No 464
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=87.00 E-value=0.59 Score=31.81 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
|..+++.+++|+|||..+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999654
No 465
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.98 E-value=4.7 Score=34.73 Aligned_cols=48 Identities=4% Similarity=0.106 Sum_probs=30.2
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
..+-+++|+|-...+....-...+...+..++... ..-.+|++|+.-.
T Consensus 121 ~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~---------------------d~gKvIilTvhp~ 168 (235)
T COG2874 121 RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLS---------------------DLGKVIILTVHPS 168 (235)
T ss_pred hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHH---------------------hCCCEEEEEeChh
Confidence 34567899999998775444445555555444211 2357888988764
No 466
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=86.95 E-value=3.9 Score=38.08 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=24.9
Q ss_pred cccccccccccCCCCHHHHHHHHHCCCCCC
Q 020452 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEP 57 (326)
Q Consensus 28 ~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p 57 (326)
+.+.++....+.++++...+.|++.||...
T Consensus 26 ~~~~~~~~l~~~g~~~~~~~kL~~~g~~tv 55 (344)
T PLN03187 26 DLFESIDKLISQGINAGDVKKLQDAGIYTC 55 (344)
T ss_pred hcccCHHHHhhCCCCHHHHHHHHHcCCCcH
Confidence 346778888889999999999999988653
No 467
>PRK05636 replicative DNA helicase; Provisional
Probab=86.93 E-value=1.8 Score=42.57 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=19.7
Q ss_pred CCeeEEeecchhHhhhCC----CHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENG----HFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~----~~~~i~~il~~l~ 229 (326)
..+++||||=.+.|.... ....+..+.+.|+
T Consensus 374 ~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK 408 (505)
T PRK05636 374 HDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLK 408 (505)
T ss_pred cCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 358899999999885321 2344555555544
No 468
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.81 E-value=3.2 Score=43.60 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l 91 (326)
..+.++.||+|+|||...-.
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CCceEEEcCCCCCHHHHHHH
Confidence 35899999999999977643
No 469
>PRK07004 replicative DNA helicase; Provisional
Probab=86.67 E-value=2.6 Score=40.89 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=20.0
Q ss_pred CeeEEeecchhHhhhC----CCHHHHHHHHHhCC
Q 020452 200 TLSFFVLDEADRMIEN----GHFRELQSIIDMLP 229 (326)
Q Consensus 200 ~l~~lViDEah~l~~~----~~~~~i~~il~~l~ 229 (326)
.+++||||=.+.|... .....+..|.+.|+
T Consensus 324 ~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK 357 (460)
T PRK07004 324 KLGLIIIDYLQLMSGSSQGENRATEISEISRSLK 357 (460)
T ss_pred CCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHH
Confidence 4789999999988632 23445666665555
No 470
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=86.51 E-value=3 Score=41.08 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=54.2
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
.+++||.++++.-+..+++.+... .++++..++|+....+....+ ....+|||+|. .+..| +++
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~---~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~rG----iDi 434 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV---TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLGRG----VDL 434 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc---cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhhcc----CCc
Confidence 357999999999888877766543 467889999998876654443 34678999995 34444 778
Q ss_pred CCeeEEeec
Q 020452 199 HTLSFFVLD 207 (326)
Q Consensus 199 ~~l~~lViD 207 (326)
.++++||.=
T Consensus 435 p~v~~VI~~ 443 (518)
T PLN00206 435 LRVRQVIIF 443 (518)
T ss_pred ccCCEEEEe
Confidence 889888853
No 471
>PRK08506 replicative DNA helicase; Provisional
Probab=86.44 E-value=2.8 Score=40.78 Aligned_cols=24 Identities=33% Similarity=0.191 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIM 94 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il 94 (326)
.|.-+++.|.||.|||...+--+.
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~ 214 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMAL 214 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHH
Confidence 445567789999999965544333
No 472
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=86.30 E-value=3 Score=35.92 Aligned_cols=25 Identities=28% Similarity=0.122 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
.|.=+.+.+++|+|||...+..+..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH
Confidence 3556788999999999776544433
No 473
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=86.30 E-value=0.89 Score=43.42 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=19.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+++++.|+||+|||.. +..++..+
T Consensus 41 ~~~h~~i~g~tGsGKt~~-i~~l~~~~ 66 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQ-IRELLASI 66 (410)
T ss_pred hhccEEEEcCCCCCHHHH-HHHHHHHH
Confidence 457999999999999975 34444444
No 474
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=86.17 E-value=3.1 Score=41.65 Aligned_cols=93 Identities=19% Similarity=0.357 Sum_probs=64.7
Q ss_pred CCeEEEEEeCcHHH--------HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH---Hh-cCCCEEEeCcHHHHHHHh
Q 020452 122 GHLRALIITPTREL--------ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LK-ARPELVVGTPGRLWELMS 189 (326)
Q Consensus 122 ~~~~~lil~Pt~~L--------~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~~-~~~~IlV~Tp~~l~~ll~ 189 (326)
.|-++.||||..+= |...++.++.++. +.++++++|.+...+..+. .+ +..+|+|+|. .+.
T Consensus 472 ~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~--~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT-----VIE 544 (677)
T COG1200 472 KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLP--ELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT-----VIE 544 (677)
T ss_pred cCCEEEEEeccccccccchhhhHHHHHHHHHHHcc--cceeEEEecCCChHHHHHHHHHHHcCCCcEEEEee-----EEE
Confidence 46699999998763 4445555554433 5689999999986554332 22 4789999995 233
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
-+ ++..+-.++||..|+++. ..++..+..+..
T Consensus 545 VG----VdVPnATvMVIe~AERFG----LaQLHQLRGRVG 576 (677)
T COG1200 545 VG----VDVPNATVMVIENAERFG----LAQLHQLRGRVG 576 (677)
T ss_pred ec----ccCCCCeEEEEechhhhh----HHHHHHhccccC
Confidence 33 678888999999999875 456666665554
No 475
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=86.13 E-value=2.8 Score=40.69 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=54.0
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCccccc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
..+.+||.+.++.=|.-+++.+.+. +.++..++|+...++....+. +..+|+|||-- ..+ .++
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv-----AgR----GID 582 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDV-----AGR----GID 582 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc-----ccc----CCC
Confidence 4668999999999888888887776 789999999998776655443 36799999942 222 277
Q ss_pred CCCeeEEe
Q 020452 198 LHTLSFFV 205 (326)
Q Consensus 198 l~~l~~lV 205 (326)
..++.+||
T Consensus 583 IpnVSlVi 590 (673)
T KOG0333|consen 583 IPNVSLVI 590 (673)
T ss_pred CCccceee
Confidence 78887766
No 476
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=86.08 E-value=0.63 Score=36.84 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
++++.+|+|+|||..+
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5899999999999765
No 477
>PHA02244 ATPase-like protein
Probab=85.97 E-value=1.4 Score=41.32 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=19.9
Q ss_pred HHHHhcCCcEEEEcCCCchHHHHH
Q 020452 66 PAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 66 ~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
..++..+.++++.+|||+|||..+
T Consensus 113 ~r~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 113 AKIVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHhcCCCEEEECCCCCCHHHHH
Confidence 344578899999999999999665
No 478
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=85.84 E-value=1.3 Score=38.39 Aligned_cols=25 Identities=24% Similarity=0.196 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
.|..+++.+++|+|||....-.+.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 5678899999999999765443333
No 479
>PRK09165 replicative DNA helicase; Provisional
Probab=85.75 E-value=5.1 Score=39.32 Aligned_cols=23 Identities=26% Similarity=0.043 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~i 93 (326)
.|.=+++.|++|.|||...+--+
T Consensus 216 ~g~livIaarpg~GKT~~al~ia 238 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIA 238 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHH
Confidence 34456889999999996654433
No 480
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=85.72 E-value=1.8 Score=37.57 Aligned_cols=25 Identities=28% Similarity=0.105 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
.|.-+.+.+++|+|||...+-.+..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4566789999999999776554443
No 481
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=85.67 E-value=1.9 Score=41.10 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHCCCCC--ChHHHH-HHHH---HHHhcCCcEEEEcCCCchHHHHHHH
Q 020452 40 RLHPLLMKSIYRLGFKE--PTPIQK-ACIP---AAAHQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 40 ~l~~~i~~~l~~~g~~~--p~~~Q~-~~i~---~~l~~g~dvlv~apTGsGKT~~~~l 91 (326)
...+++--.|...|+.. ++.-|+ ..+. .++.++.|++..+|+|+|||..|..
T Consensus 171 T~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 171 TLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred CHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 34445555556688842 222111 1121 1346789999999999999977754
No 482
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=85.66 E-value=0.75 Score=35.60 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.5
Q ss_pred EEEEcCCCchHHHHHH
Q 020452 75 IIGAAETGSGKTLAFG 90 (326)
Q Consensus 75 vlv~apTGsGKT~~~~ 90 (326)
+++.||+|+|||...-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5889999999997653
No 483
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=85.60 E-value=2 Score=42.84 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=25.4
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+++-.++|+|||..-+|..-...+...+..+.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~ 512 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLL 512 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHh
Confidence 45668999999998888877777777776554
No 484
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=85.58 E-value=1 Score=45.56 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=34.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~ 144 (326)
..++++.||||||||..+++|-+-.. ..-+||+=|--|+........+
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~-------------------------~~S~VV~D~KGEl~~~Ta~~R~ 191 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTW-------------------------PGSAIVHDIKGENWQLTAGFRA 191 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhC-------------------------CCCEEEEeCcchHHHHHHHHHH
Confidence 36899999999999999999976643 1146666677776665544433
No 485
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=85.56 E-value=3.3 Score=42.08 Aligned_cols=72 Identities=14% Similarity=-0.060 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+..-|..|....+ ..+--++++|+|+|||++-+..+-..+ .+. ........++++|-|..-
T Consensus 378 ildsSq~~A~qs~l-tyelsliqgppGTgkt~vtlkav~tLL-~n~----------------s~~~~~epIlvvC~Tnha 439 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKL-TYELSLIQGPPGTGKTLVTLKAVDTLL-LNS----------------SGYTEPEPILVVCLTNHA 439 (1025)
T ss_pred eecHHHHHHHHHHh-hhhhheeecCCCCCceeehHHHHHHHH-hcc----------------cccccccceeeeehhhHH
Confidence 45667999998874 667779999999999999866554443 331 112334468999999998
Q ss_pred HHHHHHHHHH
Q 020452 136 ALQVTDHLKE 145 (326)
Q Consensus 136 ~~Q~~~~l~~ 145 (326)
+.|....+..
T Consensus 440 vdq~ligiy~ 449 (1025)
T KOG1807|consen 440 VDQYLIGIYY 449 (1025)
T ss_pred HHHHHHHHHh
Confidence 8887766654
No 486
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=85.54 E-value=2.5 Score=37.45 Aligned_cols=131 Identities=16% Similarity=0.099 Sum_probs=63.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 150 (326)
.|.=+++.|.+|.|||...+-.+.+.. .. ++..++|++.--. ..++..++-......
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a-~~---------------------~~~~vly~SlEm~-~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAA-LN---------------------GGYPVLYFSLEMS-EEELAARLLARLSGV 74 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHH-HT---------------------TSSEEEEEESSS--HHHHHHHHHHHHHTS
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHH-Hh---------------------cCCeEEEEcCCCC-HHHHHHHHHHHhhcc
Confidence 344578889999999966544444433 21 1346788775321 223333333332221
Q ss_pred CcEEEEEEcCCCHHHHHH-------HHhcCCCEEEeC----cHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC----
Q 020452 151 NVRVVPIVGGMSTEKQER-------LLKARPELVVGT----PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN---- 215 (326)
Q Consensus 151 ~~~v~~~~g~~~~~~~~~-------~~~~~~~IlV~T----p~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~---- 215 (326)
.. ..+..+.-...... .+....-.+..+ ++.+...+..- ......+++||||=.|.|-..
T Consensus 75 ~~--~~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~---~~~~~~~~~v~IDyl~ll~~~~~~~ 149 (259)
T PF03796_consen 75 PY--NKIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRL---KREGKKVDVVFIDYLQLLKSEDSSD 149 (259)
T ss_dssp TH--HHHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHH---HHHSTTEEEEEEEEGGGSBTSCSSS
T ss_pred hh--hhhhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHH---HhhccCCCEEEechHHHhcCCCCCC
Confidence 11 11111211111111 122222223343 44555555321 122267899999999988653
Q ss_pred CCHHHHHHHHHhCC
Q 020452 216 GHFRELQSIIDMLP 229 (326)
Q Consensus 216 ~~~~~i~~il~~l~ 229 (326)
+....+..+...|+
T Consensus 150 ~~~~~~~~i~~~Lk 163 (259)
T PF03796_consen 150 NRRQEIGEISRELK 163 (259)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 34566666655544
No 487
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=85.37 E-value=2.1 Score=42.18 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=24.1
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+++-+++|+||+-.-+|......+...+..+.
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~ 517 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAAL 517 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 56678999999998887766777766666553
No 488
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=85.35 E-value=2 Score=36.53 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
...++++.|.||||||.+....+...+
T Consensus 37 ~~~h~li~G~tgsGKS~~l~~ll~~l~ 63 (205)
T PF01580_consen 37 KNPHLLIAGATGSGKSTLLRTLLLSLA 63 (205)
T ss_dssp GS-SEEEE--TTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEcCCCCCccHHHHHHHHHHH
Confidence 445899999999999977655444444
No 489
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=85.32 E-value=4.5 Score=35.85 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCchHHH
Q 020452 70 HQGKDIIGAAETGSGKTL 87 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~ 87 (326)
..|+.+++.+|.|+|||.
T Consensus 14 ~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 478999999999999995
No 490
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=85.25 E-value=3.7 Score=42.00 Aligned_cols=92 Identities=20% Similarity=0.359 Sum_probs=60.3
Q ss_pred CeEEEEEeCcHH--------HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhc
Q 020452 123 HLRALIITPTRE--------LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 123 ~~~~lil~Pt~~--------L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~ 190 (326)
+.+++|+||+.+ -+.+.++.+...+. +.++..++|+.+..+...... ...+|+|||. .+..
T Consensus 471 g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~--~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie~ 543 (681)
T PRK10917 471 GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFP--ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----VIEV 543 (681)
T ss_pred CCcEEEEEcccccccchhHHHHHHHHHHHHHHCC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----ceee
Confidence 458999999643 34455555555432 478999999988765544332 4679999994 3444
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+ .++.+++++|+..+++.. ...+.....+..
T Consensus 544 G----iDip~v~~VIi~~~~r~g----ls~lhQ~~GRvG 574 (681)
T PRK10917 544 G----VDVPNATVMVIENAERFG----LAQLHQLRGRVG 574 (681)
T ss_pred C----cccCCCcEEEEeCCCCCC----HHHHHHHhhccc
Confidence 4 778899999998887532 234444444444
No 491
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=85.24 E-value=1.5 Score=36.10 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=14.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.++.+++.|+.|+|||... -.++..+
T Consensus 23 ~~~~~ll~G~~G~GKT~ll-~~~~~~~ 48 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLL-RALLDRL 48 (185)
T ss_dssp ----EEE-B-TTSSHHHHH-HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4568999999999999653 3344444
No 492
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.22 E-value=0.32 Score=39.74 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=15.6
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIM 94 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il 94 (326)
.++.+|.|+|||..|.....
T Consensus 5 ~IvaG~NGsGKstv~~~~~~ 24 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLA 24 (187)
T ss_pred EEEecCCCCCceeeeeccch
Confidence 47789999999988855433
No 493
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=85.16 E-value=12 Score=37.85 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=34.9
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHH
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 272 (326)
....+|++||.|.|... ..+.+..++......+ .+.=+|+...|+-.++.+.
T Consensus 507 ~~~~VvLiDElD~Lvtr-~QdVlYn~fdWpt~~~---------------------sKLvvi~IaNTmdlPEr~l 558 (767)
T KOG1514|consen 507 RSTTVVLIDELDILVTR-SQDVLYNIFDWPTLKN---------------------SKLVVIAIANTMDLPERLL 558 (767)
T ss_pred CCCEEEEeccHHHHhcc-cHHHHHHHhcCCcCCC---------------------CceEEEEecccccCHHHHh
Confidence 34568999999998853 3666777766543211 4567888888887665443
No 494
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=85.05 E-value=0.74 Score=36.60 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=18.6
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHH
Q 020452 69 AHQGKDIIGAAETGSGKTLAFGLPIMQR 96 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~~l~il~~ 96 (326)
+..|.-+++.++.|+|||.. .-.+...
T Consensus 19 l~~~~~i~l~G~lGaGKTtl-~~~l~~~ 45 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTL-VQGLLQG 45 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHH-HHHHHHH
Confidence 34566778999999999944 3444443
No 495
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=84.93 E-value=6.5 Score=36.76 Aligned_cols=71 Identities=20% Similarity=0.355 Sum_probs=50.6
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCee
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~ 202 (326)
+.++||+++|+.-++.+++.++.. ..+..+..++|........+.. ..+|+|||. .+..+ .++...
T Consensus 272 ~~k~LIf~nt~~~~~~l~~~L~~~--~~~~~~~~l~g~~~~~~R~~~~--~~~iLVaTd-----v~~rG----iDi~~~- 337 (357)
T TIGR03158 272 GERGAIILDSLDEVNRLSDLLQQQ--GLGDDIGRITGFAPKKDRERAM--QFDILLGTS-----TVDVG----VDFKRD- 337 (357)
T ss_pred CCeEEEEECCHHHHHHHHHHHhhh--CCCceEEeeecCCCHHHHHHhc--cCCEEEEec-----HHhcc----cCCCCc-
Confidence 458999999999999999988874 2345777888888876654433 578999996 33433 555544
Q ss_pred EEeec
Q 020452 203 FFVLD 207 (326)
Q Consensus 203 ~lViD 207 (326)
++|+|
T Consensus 338 ~vi~~ 342 (357)
T TIGR03158 338 WLIFS 342 (357)
T ss_pred eEEEC
Confidence 56664
No 496
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=84.92 E-value=3.1 Score=38.37 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHhc-C---CcEEEEcCCCchHHHHHHHH
Q 020452 57 PTPIQKACIPAAAHQ-G---KDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 57 p~~~Q~~~i~~~l~~-g---~dvlv~apTGsGKT~~~~l~ 92 (326)
.+|||+..|..+... + +.+++.||.|.|||..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 368888888877432 2 35789999999999776543
No 497
>PRK08006 replicative DNA helicase; Provisional
Probab=84.85 E-value=7.1 Score=38.04 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=20.0
Q ss_pred CeeEEeecchhHhhhC----CCHHHHHHHHHhCC
Q 020452 200 TLSFFVLDEADRMIEN----GHFRELQSIIDMLP 229 (326)
Q Consensus 200 ~l~~lViDEah~l~~~----~~~~~i~~il~~l~ 229 (326)
.+++||||=.+.|... .....+..+.+.|+
T Consensus 336 ~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK 369 (471)
T PRK08006 336 GLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLK 369 (471)
T ss_pred CCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHH
Confidence 5899999999987522 23445666655554
No 498
>PRK08840 replicative DNA helicase; Provisional
Probab=84.80 E-value=7.4 Score=37.82 Aligned_cols=30 Identities=23% Similarity=0.187 Sum_probs=19.4
Q ss_pred CeeEEeecchhHhhhCC----CHHHHHHHHHhCC
Q 020452 200 TLSFFVLDEADRMIENG----HFRELQSIIDMLP 229 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~----~~~~i~~il~~l~ 229 (326)
.+++||||-.+.|...+ ....+..+.+.|+
T Consensus 329 ~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK 362 (464)
T PRK08840 329 GLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLK 362 (464)
T ss_pred CCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHH
Confidence 48899999999885222 2344555555554
No 499
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=84.67 E-value=4.5 Score=39.77 Aligned_cols=51 Identities=24% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
|.-+++.+++|+|||....-.+.+.+. .+-+++|++-. +-..++.+.+..+
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~-----------------------~g~~~~yis~e-~~~~~i~~~~~~~ 323 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACR-----------------------RGERCLLFAFE-ESRAQLIRNARSW 323 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-----------------------CCCcEEEEEec-CCHHHHHHHHHHc
Confidence 557788999999999766544443321 13367777643 4466776666655
No 500
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=84.59 E-value=11 Score=39.43 Aligned_cols=72 Identities=21% Similarity=0.374 Sum_probs=53.9
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhc----CCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA----RPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
..+||.+|++.-+..+++.++.... .++.+..++|+.+..++.+.+.. ...|||+|. ....+ +.+.
T Consensus 210 g~iLVFlpg~~eI~~l~~~L~~~~~-~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-----IAErg----ItIp 279 (819)
T TIGR01970 210 GSILVFLPGQAEIRRVQEQLAERLD-SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-----IAETS----LTIE 279 (819)
T ss_pred CcEEEEECCHHHHHHHHHHHHhhcC-CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-----hHhhc----cccc
Confidence 3799999999999998888876432 36889999999998887776653 357999995 23332 6677
Q ss_pred CeeEEe
Q 020452 200 TLSFFV 205 (326)
Q Consensus 200 ~l~~lV 205 (326)
++++||
T Consensus 280 ~V~~VI 285 (819)
T TIGR01970 280 GIRVVI 285 (819)
T ss_pred CceEEE
Confidence 777554
Done!