Query 020452
Match_columns 326
No_of_seqs 267 out of 2357
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 03:11:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 3.3E-39 1.1E-43 284.2 24.3 201 24-267 19-219 (242)
2 3iuy_A Probable ATP-dependent 100.0 2E-37 6.8E-42 270.2 21.6 200 26-268 11-211 (228)
3 3ber_A Probable ATP-dependent 100.0 5.2E-37 1.8E-41 271.4 23.3 195 26-267 35-229 (249)
4 3bor_A Human initiation factor 100.0 3.3E-37 1.1E-41 270.6 21.6 199 21-267 17-216 (237)
5 1wrb_A DJVLGB; RNA helicase, D 100.0 1.9E-37 6.4E-42 274.6 19.9 200 32-266 21-220 (253)
6 2db3_A ATP-dependent RNA helic 100.0 6E-37 2E-41 292.0 22.9 204 24-268 46-249 (434)
7 1qde_A EIF4A, translation init 100.0 1.2E-36 4.1E-41 264.3 21.8 197 23-268 3-199 (224)
8 3fmo_B ATP-dependent RNA helic 100.0 4E-37 1.4E-41 279.3 19.3 188 31-268 89-280 (300)
9 2oxc_A Probable ATP-dependent 100.0 1.6E-36 5.4E-41 265.0 22.3 192 26-266 16-209 (230)
10 1vec_A ATP-dependent RNA helic 100.0 1.6E-36 5.6E-41 260.0 21.7 185 34-266 3-188 (206)
11 1q0u_A Bstdead; DEAD protein, 100.0 5.9E-37 2E-41 265.6 19.0 187 33-267 3-193 (219)
12 3ly5_A ATP-dependent RNA helic 100.0 4E-36 1.4E-40 267.7 23.1 192 34-268 52-245 (262)
13 2pl3_A Probable ATP-dependent 100.0 8.9E-36 3.1E-40 261.0 23.7 194 30-267 21-214 (236)
14 2gxq_A Heat resistant RNA depe 100.0 2.1E-35 7.3E-40 253.1 21.2 186 35-267 2-187 (207)
15 1t6n_A Probable ATP-dependent 100.0 2.1E-35 7E-40 255.9 20.7 194 27-268 7-203 (220)
16 3dkp_A Probable ATP-dependent 100.0 1.6E-35 5.5E-40 260.9 17.8 198 25-266 16-221 (245)
17 2i4i_A ATP-dependent RNA helic 100.0 4.7E-34 1.6E-38 269.6 24.6 218 25-268 6-223 (417)
18 2j0s_A ATP-dependent RNA helic 100.0 3.1E-33 1.1E-37 263.7 21.5 192 28-267 31-222 (410)
19 3eiq_A Eukaryotic initiation f 100.0 1E-32 3.4E-37 260.1 20.9 203 17-267 23-226 (414)
20 1fuu_A Yeast initiation factor 100.0 7E-32 2.4E-36 252.5 20.5 191 29-268 16-206 (394)
21 1s2m_A Putative ATP-dependent 100.0 5E-32 1.7E-36 254.5 19.0 191 29-267 16-206 (400)
22 1hv8_A Putative ATP-dependent 100.0 1.6E-30 5.4E-35 240.7 23.7 188 32-268 4-191 (367)
23 1xti_A Probable ATP-dependent 100.0 5.5E-31 1.9E-35 246.3 19.0 187 34-268 8-197 (391)
24 3fmp_B ATP-dependent RNA helic 100.0 3.7E-31 1.3E-35 254.9 18.4 188 31-268 89-280 (479)
25 3sqw_A ATP-dependent RNA helic 100.0 3.5E-31 1.2E-35 260.9 18.4 201 33-268 16-226 (579)
26 3fht_A ATP-dependent RNA helic 100.0 8.2E-31 2.8E-35 246.7 18.0 194 25-268 16-213 (412)
27 3i5x_A ATP-dependent RNA helic 100.0 7.8E-31 2.7E-35 257.5 18.2 207 34-275 68-285 (563)
28 3pey_A ATP-dependent RNA helic 100.0 1.2E-30 4E-35 244.0 18.3 193 31-275 2-198 (395)
29 2z0m_A 337AA long hypothetical 100.0 3.7E-29 1.3E-33 229.0 22.4 173 41-268 1-173 (337)
30 2zj8_A DNA helicase, putative 100.0 7.3E-30 2.5E-34 257.5 16.4 190 35-277 2-191 (720)
31 2va8_A SSO2462, SKI2-type heli 100.0 2.8E-29 9.7E-34 253.0 16.6 190 34-277 8-197 (715)
32 2p6r_A Afuhel308 helicase; pro 100.0 3.1E-29 1.1E-33 252.2 10.5 191 35-277 2-194 (702)
33 4f92_B U5 small nuclear ribonu 100.0 1.3E-28 4.5E-33 265.1 13.1 191 53-277 76-266 (1724)
34 4f92_B U5 small nuclear ribonu 100.0 2.6E-28 9E-33 262.8 15.1 195 41-278 911-1106(1724)
35 3l9o_A ATP-dependent RNA helic 100.0 2.1E-28 7E-33 255.3 12.2 183 33-277 161-343 (1108)
36 3fho_A ATP-dependent RNA helic 99.9 3.4E-28 1.2E-32 235.9 12.1 198 26-275 111-312 (508)
37 3oiy_A Reverse gyrase helicase 99.9 3.1E-27 1.1E-31 223.3 16.1 179 44-266 9-205 (414)
38 2v1x_A ATP-dependent DNA helic 99.9 1E-26 3.5E-31 228.7 15.5 188 32-276 17-223 (591)
39 1oyw_A RECQ helicase, ATP-depe 99.9 1.3E-26 4.6E-31 225.3 15.3 185 33-276 1-197 (523)
40 4a2p_A RIG-I, retinoic acid in 99.9 3.1E-26 1.1E-30 223.7 17.2 183 52-276 3-189 (556)
41 2xgj_A ATP-dependent RNA helic 99.9 3.6E-26 1.2E-30 236.5 16.7 165 49-276 80-244 (1010)
42 4a4z_A Antiviral helicase SKI2 99.9 4.8E-26 1.6E-30 235.5 11.9 166 51-277 35-200 (997)
43 2ykg_A Probable ATP-dependent 99.9 1.9E-25 6.4E-30 224.4 15.7 180 46-266 3-184 (696)
44 3b6e_A Interferon-induced heli 99.9 2.5E-25 8.5E-30 191.2 14.2 152 52-222 29-184 (216)
45 3tbk_A RIG-I helicase domain; 99.9 4.4E-25 1.5E-29 215.1 16.4 171 56-267 4-176 (555)
46 4a2q_A RIG-I, retinoic acid in 99.9 7.2E-25 2.5E-29 223.3 18.4 175 50-266 242-418 (797)
47 4ddu_A Reverse gyrase; topoiso 99.9 1.5E-24 5.1E-29 226.2 17.4 174 46-265 68-260 (1104)
48 1gku_B Reverse gyrase, TOP-RG; 99.9 6.3E-25 2.2E-29 228.8 13.6 171 50-269 52-229 (1054)
49 1tf5_A Preprotein translocase 99.9 1.4E-24 4.9E-29 215.9 14.5 150 51-229 79-248 (844)
50 4a2w_A RIG-I, retinoic acid in 99.9 5.1E-24 1.7E-28 220.0 15.0 181 45-266 237-418 (936)
51 3llm_A ATP-dependent RNA helic 99.9 1.2E-23 4.1E-28 184.0 11.9 182 41-278 46-230 (235)
52 2fsf_A Preprotein translocase 99.9 2.9E-23 9.8E-28 206.2 14.3 149 52-229 71-239 (853)
53 1rif_A DAR protein, DNA helica 99.9 1.6E-23 5.5E-28 188.0 9.4 154 56-269 113-266 (282)
54 1wp9_A ATP-dependent RNA helic 99.9 4.4E-22 1.5E-26 189.9 18.9 161 56-268 9-169 (494)
55 4gl2_A Interferon-induced heli 99.9 4E-23 1.4E-27 207.5 10.7 143 56-217 7-153 (699)
56 1nkt_A Preprotein translocase 99.9 2.3E-22 8E-27 200.1 15.0 150 51-229 107-276 (922)
57 1gm5_A RECG; helicase, replica 99.9 5E-22 1.7E-26 200.0 15.5 139 43-213 356-503 (780)
58 2oca_A DAR protein, ATP-depend 99.9 5.4E-22 1.9E-26 192.3 11.0 154 55-268 112-265 (510)
59 2eyq_A TRCF, transcription-rep 99.9 1.6E-20 5.6E-25 196.8 20.0 167 39-266 586-762 (1151)
60 2fwr_A DNA repair protein RAD2 99.8 1.8E-20 6.3E-25 179.8 13.1 138 56-268 93-231 (472)
61 2xau_A PRE-mRNA-splicing facto 99.8 3.7E-20 1.3E-24 187.2 14.3 191 30-277 68-261 (773)
62 2ipc_A Preprotein translocase 99.8 1.2E-19 3.9E-24 180.4 16.7 150 52-230 76-248 (997)
63 2fz4_A DNA repair protein RAD2 99.8 5.8E-20 2E-24 160.8 13.0 139 56-269 93-232 (237)
64 2jlq_A Serine protease subunit 99.8 2.8E-21 9.5E-26 184.6 2.5 152 53-267 1-153 (451)
65 2whx_A Serine protease/ntpase/ 99.8 2.6E-21 8.7E-26 191.1 -1.2 167 39-268 155-321 (618)
66 3o8b_A HCV NS3 protease/helica 99.8 2.5E-20 8.5E-25 183.5 3.1 145 58-268 219-363 (666)
67 2z83_A Helicase/nucleoside tri 99.7 2.3E-18 8E-23 164.7 7.8 137 66-268 15-156 (459)
68 3h1t_A Type I site-specific re 99.7 3.2E-18 1.1E-22 168.7 9.0 161 56-268 178-344 (590)
69 2wv9_A Flavivirin protease NS2 99.7 2.2E-20 7.6E-25 185.7 -7.5 155 48-268 202-376 (673)
70 1yks_A Genome polyprotein [con 99.7 3.8E-19 1.3E-23 169.3 0.5 133 70-268 6-143 (440)
71 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 5.7E-18 2E-22 174.9 9.1 157 56-268 271-441 (1038)
72 2v6i_A RNA helicase; membrane, 99.7 9.7E-18 3.3E-22 159.2 9.1 136 71-268 1-137 (431)
73 3crv_A XPD/RAD3 related DNA he 99.7 1.2E-16 4.1E-21 156.2 13.6 133 53-214 1-187 (551)
74 3rc3_A ATP-dependent RNA helic 99.7 2.1E-17 7.1E-22 164.1 6.0 138 71-275 154-291 (677)
75 2vl7_A XPD; helicase, unknown 99.6 1.1E-15 3.8E-20 149.0 8.5 132 51-213 3-188 (540)
76 1z63_A Helicase of the SNF2/RA 99.6 2.4E-15 8.2E-20 145.1 9.2 149 56-266 37-188 (500)
77 3dmq_A RNA polymerase-associat 99.5 1.5E-14 5.3E-19 149.6 6.5 134 56-216 153-289 (968)
78 1z3i_X Similar to RAD54-like; 99.5 5.7E-13 1.9E-17 132.5 15.7 161 56-266 55-231 (644)
79 4a15_A XPD helicase, ATP-depen 99.4 4.9E-13 1.7E-17 132.1 12.3 83 56-160 3-88 (620)
80 3mwy_W Chromo domain-containin 99.4 9.4E-13 3.2E-17 134.0 13.0 156 56-266 236-406 (800)
81 3jux_A Protein translocase sub 99.2 2.2E-10 7.6E-15 112.5 14.7 133 52-213 72-258 (822)
82 1w36_D RECD, exodeoxyribonucle 99.0 1E-09 3.5E-14 108.2 8.6 134 58-229 151-287 (608)
83 4b3f_X DNA-binding protein smu 98.3 1.9E-06 6.5E-11 85.5 10.2 68 56-146 189-256 (646)
84 3upu_A ATP-dependent DNA helic 98.3 5.7E-06 1.9E-10 78.7 12.4 75 47-143 16-94 (459)
85 2xzl_A ATP-dependent helicase 98.2 1.6E-05 5.5E-10 80.6 15.4 69 55-146 359-427 (802)
86 2gk6_A Regulator of nonsense t 98.2 7E-06 2.4E-10 81.1 12.5 69 55-146 179-247 (624)
87 3e1s_A Exodeoxyribonuclease V, 98.1 1E-05 3.5E-10 79.0 10.8 63 56-142 189-251 (574)
88 2wjy_A Regulator of nonsense t 98.1 2.4E-05 8.2E-10 79.2 12.3 68 56-146 356-423 (800)
89 1c4o_A DNA nucleotide excision 97.3 0.00066 2.3E-08 67.4 9.1 69 53-148 6-78 (664)
90 3lfu_A DNA helicase II; SF1 he 97.1 0.0013 4.3E-08 64.9 8.8 72 55-148 8-79 (647)
91 2o0j_A Terminase, DNA packagin 97.1 0.0036 1.2E-07 57.8 10.9 72 56-149 163-234 (385)
92 3ec2_A DNA replication protein 97.0 0.0039 1.3E-07 50.7 9.5 20 71-90 37-56 (180)
93 1uaa_A REP helicase, protein ( 96.7 0.0033 1.1E-07 62.4 8.1 71 56-148 2-72 (673)
94 3te6_A Regulatory protein SIR3 96.7 0.018 6.1E-07 51.7 12.1 26 71-97 44-69 (318)
95 1pjr_A PCRA; DNA repair, DNA r 96.5 0.0077 2.6E-07 60.3 9.4 72 55-148 10-81 (724)
96 2d7d_A Uvrabc system protein B 96.4 0.011 3.8E-07 58.5 9.4 67 56-148 12-82 (661)
97 3vkw_A Replicase large subunit 96.2 0.007 2.4E-07 56.7 6.6 86 74-215 163-248 (446)
98 3u4q_A ATP-dependent helicase/ 96.1 0.015 5.1E-07 61.8 8.9 72 56-147 10-81 (1232)
99 1l8q_A Chromosomal replication 96.0 0.021 7.1E-07 51.1 8.6 18 72-89 37-54 (324)
100 1d2n_A N-ethylmaleimide-sensit 96.0 0.14 4.8E-06 44.3 13.6 18 73-90 65-82 (272)
101 2v1u_A Cell division control p 96.0 0.054 1.9E-06 49.1 11.2 19 71-89 43-61 (387)
102 2b8t_A Thymidine kinase; deoxy 95.9 0.013 4.3E-07 49.9 6.0 91 71-212 11-101 (223)
103 2kjq_A DNAA-related protein; s 95.8 0.0049 1.7E-07 48.9 3.0 19 71-89 35-53 (149)
104 1xx6_A Thymidine kinase; NESG, 95.6 0.025 8.7E-07 46.8 6.6 21 71-91 7-27 (191)
105 2orw_A Thymidine kinase; TMTK, 95.6 0.038 1.3E-06 45.3 7.7 21 71-91 2-22 (184)
106 2chg_A Replication factor C sm 95.5 0.16 5.5E-06 41.7 11.7 17 73-89 39-55 (226)
107 3u61_B DNA polymerase accessor 95.5 0.081 2.8E-06 47.1 10.2 30 199-228 104-133 (324)
108 2qby_B CDC6 homolog 3, cell di 95.4 0.14 4.7E-06 46.5 11.8 18 72-89 45-62 (384)
109 1njg_A DNA polymerase III subu 95.2 0.3 1E-05 40.5 12.4 16 74-89 47-62 (250)
110 2p6n_A ATP-dependent RNA helic 95.2 0.14 4.8E-06 42.1 9.9 72 124-208 55-130 (191)
111 2hjv_A ATP-dependent RNA helic 95.2 0.09 3.1E-06 41.9 8.5 73 124-209 36-112 (163)
112 2z4s_A Chromosomal replication 95.0 0.082 2.8E-06 49.6 9.1 19 72-90 130-148 (440)
113 2zpa_A Uncharacterized protein 95.0 0.068 2.3E-06 52.6 8.6 102 56-226 175-277 (671)
114 3eie_A Vacuolar protein sortin 94.9 0.21 7.1E-06 44.5 11.2 52 32-89 13-68 (322)
115 1a5t_A Delta prime, HOLB; zinc 94.8 0.074 2.5E-06 47.8 7.9 35 57-91 3-43 (334)
116 1iqp_A RFCS; clamp loader, ext 94.8 0.29 1E-05 43.1 11.8 17 74-90 48-64 (327)
117 1fuk_A Eukaryotic initiation f 94.8 0.13 4.3E-06 41.0 8.4 73 124-209 31-107 (165)
118 3cpe_A Terminase, DNA packagin 94.7 0.078 2.7E-06 51.7 8.2 73 56-150 163-235 (592)
119 3bos_A Putative DNA replicatio 94.7 0.02 6.9E-07 48.2 3.5 19 71-89 51-69 (242)
120 2rb4_A ATP-dependent RNA helic 94.7 0.1 3.6E-06 42.0 7.7 73 123-208 34-110 (175)
121 1sxj_E Activator 1 40 kDa subu 94.4 0.27 9.2E-06 44.1 10.7 42 35-89 12-53 (354)
122 3eaq_A Heat resistant RNA depe 94.3 0.16 5.6E-06 42.3 8.4 70 124-206 32-105 (212)
123 1sxj_D Activator 1 41 kDa subu 93.9 0.41 1.4E-05 42.7 10.8 17 73-89 59-75 (353)
124 3pfi_A Holliday junction ATP-d 93.9 0.37 1.3E-05 42.9 10.5 43 35-89 27-72 (338)
125 2qby_A CDC6 homolog 1, cell di 93.8 0.39 1.3E-05 43.2 10.6 19 71-89 44-62 (386)
126 1w4r_A Thymidine kinase; type 93.8 0.13 4.5E-06 42.5 6.6 18 72-89 20-37 (195)
127 1g5t_A COB(I)alamin adenosyltr 93.8 0.32 1.1E-05 40.2 8.9 27 71-97 27-53 (196)
128 1fnn_A CDC6P, cell division co 93.6 0.072 2.5E-06 48.4 5.3 16 74-89 46-61 (389)
129 1t5i_A C_terminal domain of A 93.6 0.33 1.1E-05 39.0 8.6 73 124-209 32-108 (172)
130 2j9r_A Thymidine kinase; TK1, 93.6 0.11 3.8E-06 43.6 5.8 40 72-134 28-67 (214)
131 2orv_A Thymidine kinase; TP4A 93.2 0.35 1.2E-05 41.1 8.3 40 72-134 19-58 (234)
132 1jr3_A DNA polymerase III subu 93.1 0.56 1.9E-05 42.2 10.3 17 74-90 40-56 (373)
133 2jgn_A DBX, DDX3, ATP-dependen 93.0 0.16 5.5E-06 41.4 5.9 72 123-207 46-121 (185)
134 1sxj_B Activator 1 37 kDa subu 92.9 0.24 8.2E-06 43.6 7.3 17 74-90 44-60 (323)
135 3kl4_A SRP54, signal recogniti 92.8 0.35 1.2E-05 45.1 8.5 18 74-91 99-116 (433)
136 4b4t_M 26S protease regulatory 92.7 0.076 2.6E-06 49.7 3.8 55 31-89 175-232 (434)
137 2i4i_A ATP-dependent RNA helic 92.6 0.67 2.3E-05 42.3 10.2 72 122-206 275-350 (417)
138 3e2i_A Thymidine kinase; Zn-bi 92.3 0.22 7.6E-06 41.8 5.8 21 71-91 27-47 (219)
139 2r6a_A DNAB helicase, replicat 92.2 0.54 1.8E-05 44.1 9.1 21 71-91 202-222 (454)
140 3i5x_A ATP-dependent RNA helic 92.2 1.5 5.2E-05 41.9 12.6 77 123-209 339-419 (563)
141 3n70_A Transport activator; si 92.0 0.12 4E-06 40.3 3.6 21 70-90 22-42 (145)
142 2gno_A DNA polymerase III, gam 91.9 1.4 4.6E-05 39.0 10.9 23 69-91 13-37 (305)
143 3fht_A ATP-dependent RNA helic 91.6 0.62 2.1E-05 42.3 8.6 71 124-207 267-341 (412)
144 3dm5_A SRP54, signal recogniti 91.6 1.1 3.8E-05 41.8 10.3 18 74-91 102-119 (443)
145 3co5_A Putative two-component 91.5 0.12 4.1E-06 40.2 3.2 20 70-89 25-44 (143)
146 4b4t_J 26S protease regulatory 91.5 0.11 3.8E-06 47.9 3.4 54 32-89 143-199 (405)
147 1xti_A Probable ATP-dependent 91.5 0.64 2.2E-05 41.9 8.5 74 123-209 250-327 (391)
148 2d7d_A Uvrabc system protein B 91.4 1.9 6.4E-05 42.5 12.3 94 123-229 445-542 (661)
149 3i32_A Heat resistant RNA depe 91.1 0.4 1.4E-05 42.4 6.6 70 124-206 29-102 (300)
150 3sqw_A ATP-dependent RNA helic 91.1 2.3 8E-05 40.9 12.6 77 123-209 288-368 (579)
151 3pey_A ATP-dependent RNA helic 91.0 0.83 2.9E-05 41.1 8.8 76 123-211 243-322 (395)
152 1s2m_A Putative ATP-dependent 90.8 0.83 2.8E-05 41.4 8.6 73 123-208 258-334 (400)
153 1hv8_A Putative ATP-dependent 90.7 0.6 2.1E-05 41.6 7.5 74 122-208 237-314 (367)
154 4b4t_L 26S protease subunit RP 90.4 0.12 4.2E-06 48.2 2.6 56 31-90 175-233 (437)
155 2ehv_A Hypothetical protein PH 90.3 1.2 4.1E-05 37.4 8.7 22 70-91 28-49 (251)
156 2eyu_A Twitching motility prot 90.2 0.17 5.7E-06 43.9 3.1 20 70-89 23-42 (261)
157 3hjh_A Transcription-repair-co 90.1 1.2 4E-05 42.2 9.2 52 71-148 13-64 (483)
158 2v1x_A ATP-dependent DNA helic 90.1 0.93 3.2E-05 44.1 8.7 72 123-207 267-342 (591)
159 2j0s_A ATP-dependent RNA helic 90.1 1 3.6E-05 40.9 8.7 72 124-208 277-352 (410)
160 2z43_A DNA repair and recombin 89.7 2 6.9E-05 38.1 10.1 22 72-93 107-128 (324)
161 2q6t_A DNAB replication FORK h 89.7 0.87 3E-05 42.5 7.9 21 71-91 199-219 (444)
162 4b4t_K 26S protease regulatory 88.9 0.18 6.2E-06 47.0 2.5 55 32-90 167-224 (428)
163 4b4t_I 26S protease regulatory 88.8 0.31 1.1E-05 45.3 4.0 55 31-89 176-233 (437)
164 1c4o_A DNA nucleotide excision 88.7 1.7 5.8E-05 42.9 9.5 77 123-212 439-519 (664)
165 2db3_A ATP-dependent RNA helic 88.7 1.6 5.5E-05 40.4 8.9 70 125-207 302-375 (434)
166 3cf0_A Transitional endoplasmi 88.6 0.2 6.8E-06 44.2 2.4 56 32-90 10-67 (301)
167 1oyw_A RECQ helicase, ATP-depe 88.4 1.3 4.6E-05 42.2 8.3 71 123-206 236-310 (523)
168 4b4t_H 26S protease regulatory 88.4 0.23 7.8E-06 46.7 2.8 55 31-89 203-260 (467)
169 2yjt_D ATP-dependent RNA helic 88.1 0.09 3.1E-06 42.2 0.0 72 124-208 31-106 (170)
170 2oap_1 GSPE-2, type II secreti 87.8 0.52 1.8E-05 45.0 4.9 42 46-89 236-277 (511)
171 3jvv_A Twitching mobility prot 87.7 0.57 1.9E-05 42.5 5.0 20 70-89 121-140 (356)
172 2eyq_A TRCF, transcription-rep 87.4 1 3.5E-05 47.4 7.3 92 123-229 812-907 (1151)
173 3h4m_A Proteasome-activating n 87.2 0.24 8.2E-06 43.0 2.1 54 33-89 13-68 (285)
174 2qz4_A Paraplegin; AAA+, SPG7, 87.1 0.28 9.7E-06 41.8 2.5 53 34-90 3-57 (262)
175 3bh0_A DNAB-like replicative h 87.0 1.6 5.6E-05 38.6 7.5 22 70-91 66-87 (315)
176 2w58_A DNAI, primosome compone 86.6 0.87 3E-05 37.1 5.1 18 73-90 55-72 (202)
177 1e9r_A Conjugal transfer prote 86.5 0.69 2.4E-05 42.9 4.9 27 71-98 52-78 (437)
178 1u0j_A DNA replication protein 86.3 1.6 5.3E-05 37.9 6.7 46 42-90 72-122 (267)
179 3cmu_A Protein RECA, recombina 86.3 0.64 2.2E-05 51.3 5.1 25 71-95 1426-1450(2050)
180 1tue_A Replication protein E1; 85.9 1.5 5E-05 36.6 6.0 52 42-96 27-81 (212)
181 2bjv_A PSP operon transcriptio 85.7 0.56 1.9E-05 40.2 3.6 20 70-89 27-46 (265)
182 1p9r_A General secretion pathw 85.3 0.62 2.1E-05 43.3 3.9 19 71-89 166-184 (418)
183 1jbk_A CLPB protein; beta barr 84.9 0.44 1.5E-05 37.9 2.4 18 72-89 43-60 (195)
184 3uk6_A RUVB-like 2; hexameric 84.8 0.76 2.6E-05 41.3 4.2 49 33-90 40-88 (368)
185 1xwi_A SKD1 protein; VPS4B, AA 84.5 1.8 6E-05 38.5 6.4 52 33-90 8-63 (322)
186 2v6i_A RNA helicase; membrane, 84.5 1.3 4.3E-05 41.2 5.7 55 123-181 171-225 (431)
187 2qgz_A Helicase loader, putati 84.3 0.8 2.7E-05 40.5 4.0 19 72-90 152-170 (308)
188 1wp9_A ATP-dependent RNA helic 84.1 2 7E-05 39.4 7.0 75 123-210 361-447 (494)
189 1lv7_A FTSH; alpha/beta domain 84.1 0.35 1.2E-05 41.3 1.6 53 33-89 8-62 (257)
190 2c9o_A RUVB-like 1; hexameric 84.0 0.91 3.1E-05 42.5 4.5 50 33-91 33-82 (456)
191 1v5w_A DMC1, meiotic recombina 83.9 2.7 9.2E-05 37.7 7.4 19 73-91 123-141 (343)
192 2r44_A Uncharacterized protein 83.9 0.9 3.1E-05 40.3 4.2 20 70-89 44-63 (331)
193 2p65_A Hypothetical protein PF 83.8 0.57 2E-05 37.2 2.7 19 72-90 43-61 (187)
194 3hws_A ATP-dependent CLP prote 83.6 1.6 5.6E-05 39.3 5.9 19 71-89 50-68 (363)
195 1yks_A Genome polyprotein [con 83.1 1.2 4.1E-05 41.5 4.9 69 123-205 177-245 (440)
196 1ixz_A ATP-dependent metallopr 82.8 0.55 1.9E-05 40.0 2.3 55 32-89 11-66 (254)
197 1w36_B RECB, exodeoxyribonucle 82.6 1.4 4.8E-05 46.5 5.7 65 73-148 17-81 (1180)
198 2i1q_A DNA repair and recombin 82.6 5.8 0.0002 34.9 9.0 22 72-93 98-119 (322)
199 3syl_A Protein CBBX; photosynt 82.3 0.57 2E-05 41.0 2.3 19 72-90 67-85 (309)
200 1ofh_A ATP-dependent HSL prote 82.2 1 3.6E-05 39.1 3.9 20 71-90 49-68 (310)
201 2x8a_A Nuclear valosin-contain 82.1 0.35 1.2E-05 42.1 0.8 54 33-89 6-61 (274)
202 3nbx_X ATPase RAVA; AAA+ ATPas 81.8 2.1 7.3E-05 40.6 6.1 31 58-89 28-58 (500)
203 3b85_A Phosphate starvation-in 81.5 1.5 5.3E-05 36.3 4.5 32 57-89 8-39 (208)
204 1ojl_A Transcriptional regulat 81.4 0.94 3.2E-05 40.0 3.3 20 70-89 23-42 (304)
205 1sxj_A Activator 1 95 kDa subu 81.3 1.6 5.6E-05 41.5 5.2 18 73-90 78-95 (516)
206 4ag6_A VIRB4 ATPase, type IV s 81.3 1.5 5.3E-05 39.9 4.8 23 71-93 34-56 (392)
207 3b9p_A CG5977-PA, isoform A; A 80.6 0.73 2.5E-05 40.1 2.3 55 32-89 16-71 (297)
208 3d8b_A Fidgetin-like protein 1 80.6 2.9 9.8E-05 37.6 6.3 20 71-90 116-135 (357)
209 2gza_A Type IV secretion syste 80.6 1.3 4.3E-05 40.2 3.9 22 68-89 171-192 (361)
210 2wv9_A Flavivirin protease NS2 80.4 1.7 5.9E-05 42.9 5.1 69 123-205 410-478 (673)
211 2jlq_A Serine protease subunit 80.4 1.8 6.2E-05 40.3 5.1 68 124-205 189-256 (451)
212 1kgd_A CASK, peripheral plasma 80.0 1.2 4E-05 35.8 3.2 19 71-89 4-22 (180)
213 2zts_A Putative uncharacterize 79.8 2.5 8.7E-05 35.2 5.4 21 71-91 29-49 (251)
214 1hqc_A RUVB; extended AAA-ATPa 79.6 1.6 5.5E-05 38.3 4.2 44 35-90 10-56 (324)
215 4a1f_A DNAB helicase, replicat 79.3 1.5 5.3E-05 39.3 4.0 22 70-91 44-65 (338)
216 1lvg_A Guanylate kinase, GMP k 79.3 1.2 4.1E-05 36.4 3.1 19 71-89 3-21 (198)
217 2z0m_A 337AA long hypothetical 79.3 4 0.00014 35.6 6.8 71 122-209 219-293 (337)
218 2oca_A DAR protein, ATP-depend 79.3 7 0.00024 36.7 8.9 74 125-210 349-426 (510)
219 2chq_A Replication factor C sm 79.0 2.6 8.8E-05 36.6 5.4 40 35-90 15-56 (319)
220 3vkg_A Dynein heavy chain, cyt 78.8 2.1 7.2E-05 49.4 5.7 50 41-91 873-925 (3245)
221 3vaa_A Shikimate kinase, SK; s 78.7 1.3 4.5E-05 36.1 3.2 21 70-90 23-43 (199)
222 4anj_A Unconventional myosin-V 78.3 3.5 0.00012 42.8 6.7 78 1-97 85-168 (1052)
223 2pt7_A CAG-ALFA; ATPase, prote 78.1 1.4 4.6E-05 39.5 3.3 20 69-88 168-187 (330)
224 2xau_A PRE-mRNA-splicing facto 78.1 5.7 0.00019 39.9 8.1 75 123-206 303-393 (773)
225 3tau_A Guanylate kinase, GMP k 77.7 1.4 4.9E-05 36.2 3.1 19 71-89 7-25 (208)
226 3trf_A Shikimate kinase, SK; a 77.7 1.1 3.8E-05 35.8 2.4 20 72-91 5-24 (185)
227 2dr3_A UPF0273 protein PH0284; 77.5 1.6 5.6E-05 36.4 3.5 22 70-91 21-42 (247)
228 1iy2_A ATP-dependent metallopr 77.4 1.4 4.7E-05 38.1 3.0 55 32-89 35-90 (278)
229 2qmh_A HPR kinase/phosphorylas 77.3 1.2 4.2E-05 36.8 2.5 19 71-89 33-51 (205)
230 3a8t_A Adenylate isopentenyltr 77.2 1.3 4.4E-05 39.8 2.8 19 73-91 41-59 (339)
231 1um8_A ATP-dependent CLP prote 77.1 1.2 4.1E-05 40.4 2.6 19 72-90 72-90 (376)
232 1qhx_A CPT, protein (chloramph 77.0 1.2 4.2E-05 35.2 2.4 18 72-89 3-20 (178)
233 3exa_A TRNA delta(2)-isopenten 76.6 1.4 4.8E-05 39.2 2.8 19 73-91 4-22 (322)
234 3hu3_A Transitional endoplasmi 76.4 1.4 4.7E-05 41.8 2.9 53 34-89 201-255 (489)
235 3t15_A Ribulose bisphosphate c 76.3 1.1 3.6E-05 39.3 2.0 17 73-89 37-53 (293)
236 1ry6_A Internal kinesin; kines 76.2 2 6.7E-05 39.0 3.8 23 68-90 79-103 (360)
237 3foz_A TRNA delta(2)-isopenten 75.9 1.5 5.1E-05 38.9 2.8 18 74-91 12-29 (316)
238 3lw7_A Adenylate kinase relate 75.8 1.2 4.3E-05 34.7 2.2 17 74-90 3-19 (179)
239 2j41_A Guanylate kinase; GMP, 75.8 1.3 4.5E-05 35.9 2.4 20 70-89 4-23 (207)
240 3lda_A DNA repair protein RAD5 75.6 5.9 0.0002 36.4 6.9 27 30-56 80-106 (400)
241 3iij_A Coilin-interacting nucl 75.4 1.5 5.2E-05 34.9 2.6 20 71-90 10-29 (180)
242 1ex7_A Guanylate kinase; subst 75.3 1.4 4.9E-05 35.9 2.4 17 73-89 2-18 (186)
243 2qp9_X Vacuolar protein sortin 75.2 1.7 6E-05 39.1 3.2 52 33-90 47-102 (355)
244 1kag_A SKI, shikimate kinase I 74.8 1.6 5.4E-05 34.4 2.5 19 71-89 3-21 (173)
245 1zp6_A Hypothetical protein AT 74.8 1.1 3.9E-05 35.9 1.7 20 70-89 7-26 (191)
246 2qor_A Guanylate kinase; phosp 74.6 1.6 5.6E-05 35.7 2.6 20 70-89 10-29 (204)
247 3ney_A 55 kDa erythrocyte memb 74.5 2.1 7.1E-05 35.3 3.2 19 71-89 18-36 (197)
248 1g8p_A Magnesium-chelatase 38 74.4 1.4 4.7E-05 39.2 2.2 19 71-89 44-62 (350)
249 2ius_A DNA translocase FTSK; n 74.4 5 0.00017 38.1 6.2 27 71-97 166-192 (512)
250 4akg_A Glutathione S-transfera 74.4 2.1 7.1E-05 48.8 4.1 27 63-89 1258-1284(2695)
251 4gl2_A Interferon-induced heli 74.1 1.2 3.9E-05 44.0 1.8 75 123-206 400-488 (699)
252 4fcw_A Chaperone protein CLPB; 74.1 1.4 4.7E-05 38.5 2.1 18 73-90 48-65 (311)
253 3fmp_B ATP-dependent RNA helic 74.0 0.65 2.2E-05 43.5 0.0 70 123-205 333-406 (479)
254 2ze6_A Isopentenyl transferase 74.0 1.8 6.3E-05 36.9 2.9 16 75-90 4-19 (253)
255 2w0m_A SSO2452; RECA, SSPF, un 73.9 3.6 0.00012 33.7 4.7 22 70-91 21-42 (235)
256 1y63_A LMAJ004144AAA protein; 73.6 1.7 5.7E-05 35.0 2.4 19 71-89 9-27 (184)
257 3tr0_A Guanylate kinase, GMP k 73.6 2.2 7.5E-05 34.6 3.2 20 70-89 5-24 (205)
258 2ewv_A Twitching motility prot 73.5 1.6 5.6E-05 39.7 2.5 20 70-89 134-153 (372)
259 1sxj_C Activator 1 40 kDa subu 73.5 4 0.00014 36.2 5.1 22 70-91 42-65 (340)
260 3vfd_A Spastin; ATPase, microt 73.5 1.5 5.1E-05 40.0 2.3 18 72-89 148-165 (389)
261 2r62_A Cell division protease 73.4 0.79 2.7E-05 39.2 0.4 52 34-90 8-62 (268)
262 4akg_A Glutathione S-transfera 73.3 4.7 0.00016 46.0 6.5 50 41-91 890-942 (2695)
263 2ce7_A Cell division protein F 73.1 1.6 5.5E-05 41.2 2.4 52 33-89 12-66 (476)
264 4gp7_A Metallophosphoesterase; 73.0 1.5 5.1E-05 34.9 1.9 20 71-90 8-27 (171)
265 1z6g_A Guanylate kinase; struc 72.8 2.4 8.3E-05 35.2 3.3 20 70-89 21-40 (218)
266 1s96_A Guanylate kinase, GMP k 72.7 1.8 6.3E-05 36.1 2.5 20 70-89 14-33 (219)
267 1in4_A RUVB, holliday junction 72.6 3.1 0.00011 37.0 4.2 19 73-91 52-70 (334)
268 3nwn_A Kinesin-like protein KI 72.3 2.7 9.3E-05 38.0 3.7 24 65-89 97-122 (359)
269 4eun_A Thermoresistant glucoki 72.3 1.9 6.5E-05 35.1 2.5 19 71-89 28-46 (200)
270 1ly1_A Polynucleotide kinase; 72.2 1.7 6E-05 34.2 2.2 16 74-89 4-19 (181)
271 2whx_A Serine protease/ntpase/ 72.1 5 0.00017 39.1 5.8 68 123-204 355-422 (618)
272 3tbk_A RIG-I helicase domain; 72.1 7.3 0.00025 36.6 6.9 77 123-208 389-478 (555)
273 3a00_A Guanylate kinase, GMP k 71.9 2.6 9E-05 33.8 3.2 17 73-89 2-18 (186)
274 3rc3_A ATP-dependent RNA helic 71.8 12 0.0004 37.0 8.4 73 126-212 323-401 (677)
275 3cf2_A TER ATPase, transitiona 71.7 2 6.9E-05 43.3 2.9 55 31-89 471-528 (806)
276 3kb2_A SPBC2 prophage-derived 71.6 1.8 6.2E-05 33.8 2.1 16 74-89 3-18 (173)
277 1knq_A Gluconate kinase; ALFA/ 71.2 1.7 5.9E-05 34.3 1.9 19 71-89 7-25 (175)
278 3crm_A TRNA delta(2)-isopenten 71.0 2.3 7.9E-05 37.9 2.8 17 74-90 7-23 (323)
279 1kht_A Adenylate kinase; phosp 70.7 2.1 7.3E-05 34.1 2.4 18 72-89 3-20 (192)
280 2ffh_A Protein (FFH); SRP54, s 70.7 16 0.00055 33.7 8.6 18 74-91 100-117 (425)
281 1bg2_A Kinesin; motor protein, 70.2 3.5 0.00012 36.8 3.9 20 71-90 75-96 (325)
282 3dc4_A Kinesin-like protein NO 70.2 3.2 0.00011 37.4 3.6 19 71-89 92-112 (344)
283 1g8x_A Myosin II heavy chain f 70.2 7.2 0.00025 40.3 6.7 71 1-91 114-191 (1010)
284 2r2a_A Uncharacterized protein 70.0 3 0.0001 34.2 3.2 18 74-91 7-24 (199)
285 2c95_A Adenylate kinase 1; tra 69.7 3 0.0001 33.4 3.1 20 70-89 7-26 (196)
286 2iut_A DNA translocase FTSK; n 69.5 7.5 0.00026 37.4 6.2 26 72-97 214-239 (574)
287 2zan_A Vacuolar protein sortin 69.4 2.6 9E-05 39.2 3.0 56 32-90 129-185 (444)
288 1znw_A Guanylate kinase, GMP k 69.4 3.1 0.00011 34.0 3.1 20 70-89 18-37 (207)
289 3cm0_A Adenylate kinase; ATP-b 69.3 1.7 5.7E-05 34.7 1.5 19 71-89 3-21 (186)
290 3u4q_B ATP-dependent helicase/ 69.2 3.5 0.00012 43.4 4.2 22 76-97 5-26 (1166)
291 1vma_A Cell division protein F 69.1 6.8 0.00023 34.5 5.5 18 74-91 106-123 (306)
292 1v8k_A Kinesin-like protein KI 69.1 3.6 0.00012 38.0 3.7 24 66-90 148-173 (410)
293 4etp_A Kinesin-like protein KA 69.0 4 0.00014 37.5 4.1 25 64-89 132-158 (403)
294 3k1j_A LON protease, ATP-depen 68.9 4.3 0.00015 39.4 4.5 21 69-89 57-77 (604)
295 3d3q_A TRNA delta(2)-isopenten 68.7 2.7 9.3E-05 37.7 2.8 17 74-90 9-25 (340)
296 2va8_A SSO2462, SKI2-type heli 68.6 13 0.00044 36.6 8.1 75 123-206 252-362 (715)
297 2h58_A Kinesin-like protein KI 68.5 4 0.00014 36.5 3.9 25 64-89 72-98 (330)
298 2vvg_A Kinesin-2; motor protei 68.5 4 0.00014 36.8 3.9 19 71-89 87-107 (350)
299 2y65_A Kinesin, kinesin heavy 68.5 4 0.00014 37.0 3.9 19 71-89 82-102 (365)
300 3eph_A TRNA isopentenyltransfe 68.4 3.2 0.00011 38.3 3.2 20 209-228 209-228 (409)
301 4a14_A Kinesin, kinesin-like p 68.2 4.1 0.00014 36.6 3.9 19 71-89 81-101 (344)
302 3b6u_A Kinesin-like protein KI 68.1 3.8 0.00013 37.3 3.7 19 71-89 99-119 (372)
303 2cvh_A DNA repair and recombin 68.0 2.8 9.6E-05 34.2 2.6 21 71-91 19-39 (220)
304 2zfi_A Kinesin-like protein KI 68.0 4.1 0.00014 37.0 3.9 23 66-89 83-107 (366)
305 3gbj_A KIF13B protein; kinesin 68.0 3.9 0.00013 36.9 3.7 23 66-89 86-110 (354)
306 3vkg_A Dynein heavy chain, cyt 67.8 3 0.0001 48.2 3.5 27 62-88 1294-1320(3245)
307 1t5c_A CENP-E protein, centrom 67.8 3.9 0.00013 36.8 3.7 19 71-89 75-95 (349)
308 1x88_A Kinesin-like protein KI 67.5 3.9 0.00013 37.0 3.6 23 66-89 82-106 (359)
309 2nr8_A Kinesin-like protein KI 67.5 4 0.00014 36.9 3.7 24 65-89 96-121 (358)
310 1lkx_A Myosin IE heavy chain; 67.3 8.3 0.00028 38.1 6.2 77 1-97 36-118 (697)
311 3lre_A Kinesin-like protein KI 67.1 4 0.00014 36.9 3.6 19 71-89 103-123 (355)
312 3uie_A Adenylyl-sulfate kinase 67.0 3 0.0001 33.9 2.6 20 70-89 23-42 (200)
313 1goj_A Kinesin, kinesin heavy 67.0 4 0.00014 36.9 3.6 19 71-89 78-98 (355)
314 3mm4_A Histidine kinase homolo 66.9 46 0.0016 26.6 10.0 66 71-146 19-84 (206)
315 3t0q_A AGR253WP; kinesin, alph 66.9 3.5 0.00012 37.1 3.2 25 64-89 77-103 (349)
316 3u06_A Protein claret segregat 66.5 4 0.00014 37.6 3.5 25 64-89 130-156 (412)
317 2px0_A Flagellar biosynthesis 66.4 4.9 0.00017 35.2 4.0 20 72-91 105-124 (296)
318 2heh_A KIF2C protein; kinesin, 66.3 4.5 0.00015 37.0 3.8 24 66-90 128-153 (387)
319 2wbe_C Bipolar kinesin KRP-130 66.3 4.2 0.00014 37.0 3.6 19 71-89 98-118 (373)
320 3t61_A Gluconokinase; PSI-biol 66.2 2.7 9.1E-05 34.1 2.1 17 73-89 19-35 (202)
321 3pvs_A Replication-associated 66.2 3.3 0.00011 38.7 2.9 18 73-90 51-68 (447)
322 2bdt_A BH3686; alpha-beta prot 66.1 2.7 9.3E-05 33.6 2.1 18 73-90 3-20 (189)
323 3cob_A Kinesin heavy chain-lik 66.0 3.9 0.00013 37.2 3.3 25 64-89 71-97 (369)
324 3f9v_A Minichromosome maintena 65.8 2.6 8.8E-05 41.0 2.2 16 74-89 329-344 (595)
325 3hr8_A Protein RECA; alpha and 65.7 4.7 0.00016 36.4 3.8 19 71-89 60-78 (356)
326 1g41_A Heat shock protein HSLU 65.5 3.1 0.00011 38.8 2.6 18 72-89 50-67 (444)
327 3pxg_A Negative regulator of g 65.4 2.7 9.4E-05 39.4 2.3 20 71-90 200-219 (468)
328 1gvn_B Zeta; postsegregational 65.4 2.5 8.5E-05 36.9 1.8 18 73-90 34-51 (287)
329 1n0w_A DNA repair protein RAD5 65.2 4 0.00014 33.8 3.1 24 70-93 22-45 (243)
330 2rhm_A Putative kinase; P-loop 65.2 2.5 8.7E-05 33.7 1.8 19 71-89 4-22 (193)
331 2owm_A Nckin3-434, related to 65.2 4.9 0.00017 37.5 3.9 19 71-89 134-154 (443)
332 4db1_A Myosin-7; S1DC, cardiac 65.1 8.9 0.0003 38.4 5.9 77 1-97 113-195 (783)
333 1w9i_A Myosin II heavy chain; 65.0 9 0.00031 38.3 5.9 71 1-91 114-191 (770)
334 1fuu_A Yeast initiation factor 64.9 1.3 4.6E-05 39.8 0.0 71 123-206 259-333 (394)
335 2ycu_A Non muscle myosin 2C, a 64.9 8 0.00027 39.9 5.7 77 1-97 88-170 (995)
336 2v26_A Myosin VI; calmodulin-b 64.9 12 0.0004 37.6 6.8 78 1-97 81-164 (784)
337 1f2t_A RAD50 ABC-ATPase; DNA d 64.7 3.2 0.00011 32.2 2.2 16 74-89 25-40 (149)
338 2v54_A DTMP kinase, thymidylat 64.7 2.9 0.0001 33.7 2.1 19 71-89 3-21 (204)
339 2dfs_A Myosin-5A; myosin-V, in 64.7 11 0.00039 39.2 6.9 77 1-97 98-180 (1080)
340 2ykg_A Probable ATP-dependent 64.6 3.9 0.00014 40.1 3.4 79 122-209 397-488 (696)
341 1kk8_A Myosin heavy chain, str 64.6 9.1 0.00031 38.7 5.9 76 1-97 111-193 (837)
342 1w7j_A Myosin VA; motor protei 64.6 12 0.0004 37.7 6.7 77 1-97 98-180 (795)
343 3eiq_A Eukaryotic initiation f 64.5 4.2 0.00015 36.7 3.3 71 124-207 281-355 (414)
344 2qen_A Walker-type ATPase; unk 64.4 5.5 0.00019 34.9 4.0 25 65-89 24-48 (350)
345 2bwj_A Adenylate kinase 5; pho 64.3 4.1 0.00014 32.7 2.9 20 70-89 10-29 (199)
346 1xjc_A MOBB protein homolog; s 64.3 7.4 0.00025 31.0 4.3 16 74-89 6-21 (169)
347 2r8r_A Sensor protein; KDPD, P 64.3 6.1 0.00021 33.3 3.9 22 74-95 8-29 (228)
348 3bfn_A Kinesin-like protein KI 64.3 4.1 0.00014 37.2 3.1 32 57-89 75-116 (388)
349 3mwy_W Chromo domain-containin 64.2 86 0.0029 31.3 13.1 76 123-210 572-653 (800)
350 1ye8_A Protein THEP1, hypothet 64.2 4.3 0.00015 32.5 3.0 16 74-89 2-17 (178)
351 3c8u_A Fructokinase; YP_612366 63.9 2.6 8.8E-05 34.6 1.6 19 71-89 21-39 (208)
352 3cmw_A Protein RECA, recombina 63.9 4.5 0.00015 44.1 3.8 90 72-214 1431-1523(1706)
353 4a74_A DNA repair and recombin 63.9 2.8 9.6E-05 34.5 1.8 22 70-91 23-44 (231)
354 3tif_A Uncharacterized ABC tra 63.8 2.9 9.9E-05 35.3 1.9 32 198-229 161-192 (235)
355 3ice_A Transcription terminati 63.6 28 0.00095 31.9 8.4 35 56-90 156-192 (422)
356 1zuh_A Shikimate kinase; alpha 63.5 3.5 0.00012 32.2 2.3 19 72-90 7-25 (168)
357 1via_A Shikimate kinase; struc 63.3 3.7 0.00013 32.4 2.4 18 73-90 5-22 (175)
358 3lnc_A Guanylate kinase, GMP k 63.3 3.3 0.00011 34.5 2.2 20 70-89 25-44 (231)
359 2pez_A Bifunctional 3'-phospho 62.8 3.3 0.00011 32.8 2.0 19 71-89 4-22 (179)
360 3kta_A Chromosome segregation 62.7 4.6 0.00016 32.0 2.9 16 74-89 28-43 (182)
361 1aky_A Adenylate kinase; ATP:A 62.7 3.9 0.00013 33.7 2.5 19 71-89 3-21 (220)
362 3m6a_A ATP-dependent protease 62.6 3.5 0.00012 39.5 2.4 18 72-89 108-125 (543)
363 1tev_A UMP-CMP kinase; ploop, 62.6 3.6 0.00012 32.8 2.2 19 72-90 3-21 (196)
364 3asz_A Uridine kinase; cytidin 62.4 3 0.0001 34.0 1.8 19 71-89 5-23 (211)
365 2v9p_A Replication protein E1; 62.3 4.3 0.00015 35.8 2.8 20 70-89 124-143 (305)
366 2iyv_A Shikimate kinase, SK; t 62.1 4.2 0.00014 32.3 2.5 17 73-89 3-19 (184)
367 3qf7_A RAD50; ABC-ATPase, ATPa 62.1 3.4 0.00012 37.4 2.2 16 74-89 25-40 (365)
368 1zd8_A GTP:AMP phosphotransfer 61.8 3.7 0.00013 34.0 2.3 19 71-89 6-24 (227)
369 1z5z_A Helicase of the SNF2/RA 61.7 41 0.0014 28.7 9.0 76 123-210 112-193 (271)
370 1np6_A Molybdopterin-guanine d 61.7 6 0.0002 31.7 3.3 16 73-88 7-22 (174)
371 3o8b_A HCV NS3 protease/helica 61.6 5.3 0.00018 39.3 3.5 53 122-181 395-447 (666)
372 3fb4_A Adenylate kinase; psych 61.5 3.7 0.00013 33.6 2.1 17 74-90 2-18 (216)
373 2i3b_A HCR-ntpase, human cance 61.5 5.8 0.0002 32.2 3.3 29 198-226 103-133 (189)
374 1i84_S Smooth muscle myosin he 61.5 7.3 0.00025 41.1 4.8 76 1-97 111-193 (1184)
375 3oiy_A Reverse gyrase helicase 61.3 6.4 0.00022 35.7 3.9 71 124-209 253-329 (414)
376 1nks_A Adenylate kinase; therm 61.3 3.6 0.00012 32.7 2.0 16 74-89 3-18 (194)
377 2z83_A Helicase/nucleoside tri 61.2 3.5 0.00012 38.5 2.1 55 123-181 190-244 (459)
378 1e6c_A Shikimate kinase; phosp 60.8 4.1 0.00014 31.9 2.2 17 73-89 3-19 (173)
379 2rep_A Kinesin-like protein KI 60.7 4.7 0.00016 36.7 2.8 19 71-89 113-133 (376)
380 1m7g_A Adenylylsulfate kinase; 60.7 4.9 0.00017 32.9 2.7 30 58-89 13-42 (211)
381 2zr9_A Protein RECA, recombina 60.7 7.5 0.00026 34.9 4.2 23 71-93 60-82 (349)
382 3dl0_A Adenylate kinase; phosp 60.7 4 0.00014 33.4 2.2 17 74-90 2-18 (216)
383 2cdn_A Adenylate kinase; phosp 60.6 4.5 0.00015 32.7 2.5 18 72-89 20-37 (201)
384 1cke_A CK, MSSA, protein (cyti 60.5 4.3 0.00015 33.4 2.4 19 72-90 5-23 (227)
385 2yvu_A Probable adenylyl-sulfa 60.4 3.8 0.00013 32.7 2.0 20 71-90 12-31 (186)
386 2cbz_A Multidrug resistance-as 60.3 3.7 0.00013 34.7 1.9 20 70-89 29-48 (237)
387 1u94_A RECA protein, recombina 60.2 8.3 0.00028 34.7 4.4 23 71-93 62-84 (356)
388 1zak_A Adenylate kinase; ATP:A 59.9 4.4 0.00015 33.4 2.4 20 71-90 4-23 (222)
389 3pxi_A Negative regulator of g 59.6 3.8 0.00013 40.9 2.2 20 71-90 200-219 (758)
390 2f1r_A Molybdopterin-guanine d 59.6 4.4 0.00015 32.4 2.2 16 74-89 4-19 (171)
391 1cr0_A DNA primase/helicase; R 59.4 5.9 0.0002 34.3 3.2 22 70-91 33-54 (296)
392 1sgw_A Putative ABC transporte 59.3 4.1 0.00014 33.8 2.0 32 198-229 149-180 (214)
393 1nlf_A Regulatory protein REPA 59.3 5.4 0.00018 34.3 2.9 23 70-92 28-50 (279)
394 1qf9_A UMP/CMP kinase, protein 59.3 4 0.00014 32.4 2.0 16 74-89 8-23 (194)
395 2bbw_A Adenylate kinase 4, AK4 59.0 4.9 0.00017 33.8 2.5 19 71-89 26-44 (246)
396 3dmq_A RNA polymerase-associat 58.7 7.4 0.00025 40.1 4.2 91 123-230 503-599 (968)
397 2plr_A DTMP kinase, probable t 58.6 4.2 0.00014 32.9 2.0 19 71-89 3-21 (213)
398 3nwj_A ATSK2; P loop, shikimat 58.6 6.5 0.00022 33.5 3.2 20 71-90 47-66 (250)
399 2p6r_A Afuhel308 helicase; pro 58.4 18 0.0006 35.6 6.8 75 123-206 242-346 (702)
400 1ko7_A HPR kinase/phosphatase; 58.2 25 0.00086 31.0 7.0 51 40-90 91-162 (314)
401 4a2p_A RIG-I, retinoic acid in 58.2 11 0.00036 35.5 5.0 78 123-209 390-480 (556)
402 2pze_A Cystic fibrosis transme 57.9 4.2 0.00015 34.1 1.9 20 70-89 32-51 (229)
403 2pt5_A Shikimate kinase, SK; a 57.8 5 0.00017 31.2 2.3 16 74-89 2-17 (168)
404 3auy_A DNA double-strand break 57.8 4.2 0.00014 36.7 2.0 16 74-89 27-42 (371)
405 3tqf_A HPR(Ser) kinase; transf 57.7 5.5 0.00019 32.1 2.4 21 71-91 15-35 (181)
406 1nn5_A Similar to deoxythymidy 57.6 4.9 0.00017 32.6 2.2 20 71-90 8-27 (215)
407 2wwf_A Thymidilate kinase, put 57.6 4.9 0.00017 32.6 2.2 19 71-89 9-27 (212)
408 2ghi_A Transport protein; mult 57.5 4.3 0.00015 34.8 1.9 31 199-229 172-202 (260)
409 1ukz_A Uridylate kinase; trans 57.5 4.8 0.00016 32.5 2.1 17 73-89 16-32 (203)
410 2ff7_A Alpha-hemolysin translo 57.4 4.3 0.00015 34.5 1.9 31 198-228 161-191 (247)
411 2if2_A Dephospho-COA kinase; a 57.4 4.6 0.00016 32.7 2.0 16 74-89 3-18 (204)
412 3bgw_A DNAB-like replicative h 57.4 7.2 0.00024 36.3 3.5 24 71-94 196-219 (444)
413 2qt1_A Nicotinamide riboside k 57.4 4.2 0.00014 33.1 1.8 19 71-89 20-38 (207)
414 2p5t_B PEZT; postsegregational 57.4 3.5 0.00012 35.0 1.3 18 72-89 32-49 (253)
415 3h1t_A Type I site-specific re 57.3 23 0.00079 33.8 7.3 93 123-229 439-541 (590)
416 3a4m_A L-seryl-tRNA(SEC) kinas 57.2 4.8 0.00016 34.3 2.2 19 72-90 4-22 (260)
417 2jaq_A Deoxyguanosine kinase; 57.1 4.9 0.00017 32.2 2.2 16 74-89 2-17 (205)
418 3gfo_A Cobalt import ATP-bindi 57.1 4.3 0.00015 35.2 1.9 31 198-228 159-189 (275)
419 2pcj_A ABC transporter, lipopr 57.0 4.2 0.00014 34.0 1.7 32 198-229 156-187 (224)
420 3nh6_A ATP-binding cassette SU 56.9 5 0.00017 35.4 2.2 31 199-229 207-237 (306)
421 1jjv_A Dephospho-COA kinase; P 56.8 4.9 0.00017 32.6 2.1 16 74-89 4-19 (206)
422 1ak2_A Adenylate kinase isoenz 56.6 7.3 0.00025 32.4 3.2 20 71-90 15-34 (233)
423 4e22_A Cytidylate kinase; P-lo 56.3 7.3 0.00025 33.0 3.2 19 71-89 26-44 (252)
424 2vli_A Antibiotic resistance p 56.3 4.1 0.00014 32.2 1.5 20 71-90 4-23 (183)
425 4g1u_C Hemin import ATP-bindin 56.3 4.6 0.00016 34.8 1.9 30 200-229 165-194 (266)
426 4ddu_A Reverse gyrase; topoiso 56.1 8.8 0.0003 40.1 4.3 77 124-211 310-388 (1104)
427 1g6h_A High-affinity branched- 56.1 4.6 0.00016 34.5 1.9 31 199-229 170-200 (257)
428 3be4_A Adenylate kinase; malar 56.1 5.9 0.0002 32.6 2.5 19 71-89 4-22 (217)
429 1ji0_A ABC transporter; ATP bi 55.8 4.7 0.00016 34.0 1.9 32 198-229 155-186 (240)
430 1mv5_A LMRA, multidrug resista 55.8 4.1 0.00014 34.5 1.5 30 200-229 157-186 (243)
431 1tf5_A Preprotein translocase 55.7 20 0.00068 36.1 6.5 52 125-180 434-487 (844)
432 1b0u_A Histidine permease; ABC 55.7 4.9 0.00017 34.5 2.0 31 199-229 170-200 (262)
433 1ypw_A Transitional endoplasmi 55.6 4.6 0.00016 40.7 2.0 20 70-89 236-255 (806)
434 3pxi_A Negative regulator of g 55.6 4.8 0.00016 40.2 2.1 17 74-90 523-539 (758)
435 1f9v_A Kinesin-like protein KA 55.5 5.6 0.00019 35.8 2.4 24 65-89 77-102 (347)
436 1rj9_A FTSY, signal recognitio 55.5 7.1 0.00024 34.3 3.0 18 72-89 102-119 (304)
437 3tlx_A Adenylate kinase 2; str 55.2 6.8 0.00023 33.0 2.8 19 71-89 28-46 (243)
438 2dhr_A FTSH; AAA+ protein, hex 55.2 5.4 0.00019 37.8 2.3 54 32-90 26-82 (499)
439 3qks_A DNA double-strand break 55.1 5.6 0.00019 32.5 2.2 16 74-89 25-40 (203)
440 1htw_A HI0065; nucleotide-bind 55.0 4.6 0.00016 31.8 1.5 19 70-88 31-49 (158)
441 2qi9_C Vitamin B12 import ATP- 54.8 5.1 0.00017 34.1 1.9 27 203-229 154-180 (249)
442 1xp8_A RECA protein, recombina 54.8 11 0.00037 34.1 4.2 21 71-91 73-93 (366)
443 2pbr_A DTMP kinase, thymidylat 54.4 5.7 0.0002 31.5 2.1 15 75-89 3-17 (195)
444 2nq2_C Hypothetical ABC transp 54.4 5.2 0.00018 34.1 1.9 31 199-229 145-175 (253)
445 2yz2_A Putative ABC transporte 54.3 5.2 0.00018 34.3 1.9 32 198-229 154-185 (266)
446 2ixe_A Antigen peptide transpo 54.2 5.3 0.00018 34.5 1.9 32 198-229 172-203 (271)
447 1vpl_A ABC transporter, ATP-bi 54.1 5.4 0.00019 34.1 2.0 32 198-229 162-193 (256)
448 4a2w_A RIG-I, retinoic acid in 54.1 11 0.00039 38.5 4.7 80 121-209 629-721 (936)
449 3fho_A ATP-dependent RNA helic 53.9 1.6 5.4E-05 41.4 -1.6 73 123-208 357-433 (508)
450 2z0h_A DTMP kinase, thymidylat 53.9 6 0.0002 31.6 2.1 16 75-90 3-18 (197)
451 2olj_A Amino acid ABC transpor 53.6 5.6 0.00019 34.2 2.0 32 198-229 175-206 (263)
452 2vhj_A Ntpase P4, P4; non- hyd 53.6 7.7 0.00026 34.6 2.9 23 71-93 122-144 (331)
453 3b9q_A Chloroplast SRP recepto 53.6 6.9 0.00024 34.3 2.6 17 73-89 101-117 (302)
454 1e4v_A Adenylate kinase; trans 53.5 5.9 0.0002 32.4 2.0 16 74-89 2-17 (214)
455 1r6b_X CLPA protein; AAA+, N-t 53.4 6 0.00021 39.4 2.5 20 71-90 206-225 (758)
456 2zu0_C Probable ATP-dependent 53.1 7.3 0.00025 33.4 2.7 31 199-229 181-211 (267)
457 1rz3_A Hypothetical protein rb 52.9 6 0.00021 32.1 2.0 18 72-89 22-39 (201)
458 2ihy_A ABC transporter, ATP-bi 52.8 5.7 0.00019 34.5 1.9 31 198-228 177-207 (279)
459 2d2e_A SUFC protein; ABC-ATPas 52.7 7.2 0.00025 33.1 2.5 31 199-229 160-190 (250)
460 2j37_W Signal recognition part 52.6 66 0.0023 30.3 9.4 18 74-91 103-120 (504)
461 1r6b_X CLPA protein; AAA+, N-t 52.5 5.6 0.00019 39.6 2.1 17 74-90 490-506 (758)
462 4a2q_A RIG-I, retinoic acid in 52.4 15 0.0005 36.9 5.1 78 123-209 631-721 (797)
463 1uf9_A TT1252 protein; P-loop, 52.3 6.2 0.00021 31.6 2.0 16 74-89 10-25 (203)
464 2xb4_A Adenylate kinase; ATP-b 51.6 6.8 0.00023 32.4 2.2 16 74-89 2-17 (223)
465 1w5s_A Origin recognition comp 51.4 8 0.00027 34.9 2.8 18 72-89 50-69 (412)
466 1zu4_A FTSY; GTPase, signal re 50.6 13 0.00043 32.9 3.9 18 74-91 107-124 (320)
467 3qkt_A DNA double-strand break 50.6 7 0.00024 34.8 2.2 17 74-90 25-41 (339)
468 1vht_A Dephospho-COA kinase; s 50.6 7.2 0.00025 31.9 2.2 18 72-89 4-21 (218)
469 3cf2_A TER ATPase, transitiona 50.6 6.8 0.00023 39.5 2.2 19 72-90 238-256 (806)
470 3io5_A Recombination and repai 50.5 11 0.00039 33.4 3.5 19 74-92 30-48 (333)
471 1q57_A DNA primase/helicase; d 50.5 13 0.00044 35.0 4.1 23 71-93 241-263 (503)
472 1ltq_A Polynucleotide kinase; 50.3 7.2 0.00025 33.7 2.2 17 74-90 4-20 (301)
473 1odf_A YGR205W, hypothetical 3 50.0 7.4 0.00025 33.9 2.2 16 74-89 33-48 (290)
474 2jeo_A Uridine-cytidine kinase 49.4 6.8 0.00023 32.9 1.8 19 71-89 24-42 (245)
475 2bbs_A Cystic fibrosis transme 49.3 6.5 0.00022 34.3 1.7 20 70-89 62-81 (290)
476 2v3c_C SRP54, signal recogniti 49.3 14 0.0005 34.1 4.2 19 74-92 101-119 (432)
477 1qvr_A CLPB protein; coiled co 49.0 6.3 0.00022 39.9 1.8 18 73-90 589-606 (854)
478 2h57_A ADP-ribosylation factor 49.0 6.9 0.00024 31.0 1.7 17 72-88 21-37 (190)
479 2q5c_A NTRC family transcripti 48.9 68 0.0023 25.9 7.8 61 124-190 5-67 (196)
480 2i3b_A HCR-ntpase, human cance 48.9 8.3 0.00028 31.2 2.2 18 72-89 1-18 (189)
481 4h1g_A Maltose binding protein 48.0 12 0.00042 37.0 3.7 25 64-89 454-480 (715)
482 1svm_A Large T antigen; AAA+ f 47.7 12 0.0004 34.1 3.2 20 70-89 167-186 (377)
483 1gtv_A TMK, thymidylate kinase 47.7 4.6 0.00016 32.8 0.4 15 75-89 3-17 (214)
484 2h17_A ADP-ribosylation factor 47.2 6.3 0.00022 30.9 1.2 18 71-88 20-37 (181)
485 2pjz_A Hypothetical protein ST 47.0 9.3 0.00032 32.8 2.3 32 198-229 144-175 (263)
486 1sq5_A Pantothenate kinase; P- 46.9 15 0.00051 32.1 3.7 18 72-89 80-97 (308)
487 3cmu_A Protein RECA, recombina 46.6 19 0.00064 40.1 5.0 27 71-97 1080-1106(2050)
488 1tf7_A KAIC; homohexamer, hexa 46.6 15 0.00051 34.8 3.9 28 70-97 37-64 (525)
489 3czc_A RMPB; alpha/beta sandwi 46.6 39 0.0013 24.5 5.4 58 123-183 18-77 (110)
490 2og2_A Putative signal recogni 46.6 10 0.00034 34.3 2.6 16 74-89 159-174 (359)
491 3aez_A Pantothenate kinase; tr 46.2 8.2 0.00028 34.0 1.9 19 71-89 89-107 (312)
492 3sop_A Neuronal-specific septi 46.2 8.3 0.00029 33.2 1.9 16 74-89 4-19 (270)
493 2grj_A Dephospho-COA kinase; T 45.9 9.6 0.00033 30.9 2.1 16 74-89 14-29 (192)
494 1uj2_A Uridine-cytidine kinase 45.7 9.3 0.00032 32.2 2.1 16 74-89 24-39 (252)
495 3ake_A Cytidylate kinase; CMP 45.4 9.7 0.00033 30.6 2.1 17 74-90 4-20 (208)
496 3r20_A Cytidylate kinase; stru 45.3 9.9 0.00034 32.0 2.2 20 71-90 8-27 (233)
497 2vp4_A Deoxynucleoside kinase; 45.3 8.7 0.0003 31.9 1.8 19 71-89 19-37 (230)
498 2zj8_A DNA helicase, putative 45.3 35 0.0012 33.5 6.6 74 123-205 237-343 (720)
499 3sr0_A Adenylate kinase; phosp 45.2 13 0.00044 30.6 2.8 16 74-89 2-17 (206)
500 1pui_A ENGB, probable GTP-bind 45.1 8.5 0.00029 30.9 1.7 20 70-89 24-43 (210)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.3e-39 Score=284.20 Aligned_cols=201 Identities=34% Similarity=0.497 Sum_probs=180.1
Q ss_pred cCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHh
Q 020452 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 103 (326)
Q Consensus 24 ~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~ 103 (326)
+.+.+.|+++.+|+++++++.+++++.++||..|+++|.++++.++ +|+|+++++|||+|||++|++|++..+....
T Consensus 19 ~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~-- 95 (242)
T 3fe2_A 19 VRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHINHQP-- 95 (242)
T ss_dssp EESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHH-HTCCEEEEECTTSCHHHHHHHHHHHHHHTSC--
T ss_pred EeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCcCHHHHHHHHHHHHHHHhcc--
Confidence 3455678899999999999999999999999999999999999985 8999999999999999999999999874321
Q ss_pred hhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHH
Q 020452 104 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183 (326)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~ 183 (326)
......++++||++||++|+.|+++.++.+....++++..++|+.........+..+++|+|+||++
T Consensus 96 -------------~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 96 -------------FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp -------------CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred -------------ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 1122346789999999999999999999999988999999999999988888888899999999999
Q ss_pred HHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEee
Q 020452 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263 (326)
Q Consensus 184 l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 263 (326)
+.+++..+. ..+.+++++|+||||++++++|...+..++..++ ..+|+++|||
T Consensus 163 l~~~l~~~~---~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~------------------------~~~q~~~~SA 215 (242)
T 3fe2_A 163 LIDFLECGK---TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR------------------------PDRQTLMWSA 215 (242)
T ss_dssp HHHHHHHTS---CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSC------------------------SSCEEEEEES
T ss_pred HHHHHHcCC---CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCC------------------------ccceEEEEEe
Confidence 999997653 5688999999999999999999999999999987 6799999999
Q ss_pred eccC
Q 020452 264 TIAL 267 (326)
Q Consensus 264 Tl~~ 267 (326)
|++.
T Consensus 216 T~~~ 219 (242)
T 3fe2_A 216 TWPK 219 (242)
T ss_dssp CCCH
T ss_pred ecCH
Confidence 9983
No 2
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=270.16 Aligned_cols=200 Identities=31% Similarity=0.457 Sum_probs=168.0
Q ss_pred ccccccccccccc-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhh
Q 020452 26 EAEISTEFDAWNE-LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104 (326)
Q Consensus 26 ~~~~~~~~~~f~~-l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~ 104 (326)
....|++..+|++ +++++.+++++.++||..|+++|.++++.++ +|+|+++++|||+|||++|++|++..+......
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~- 88 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIIL-QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS- 88 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhccch-
Confidence 4467889999999 8999999999999999999999999999985 899999999999999999999999887543211
Q ss_pred hhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH
Q 020452 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l 184 (326)
.....++++||++||++|+.|+++.++.+. ..++++..++|+.........+..+++|+|+||+++
T Consensus 89 -------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l 154 (228)
T 3iuy_A 89 -------------REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRL 154 (228)
T ss_dssp -----------------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHH
T ss_pred -------------hhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHH
Confidence 112346789999999999999999999986 457889999999888777777888999999999999
Q ss_pred HHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeee
Q 020452 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264 (326)
Q Consensus 185 ~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SAT 264 (326)
.+++.... ..+.+++++|+||||++.+++|...+..++..++ ..+|++++|||
T Consensus 155 ~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~l~~SAT 207 (228)
T 3iuy_A 155 NDLQMNNS---VNLRSITYLVIDEADKMLDMEFEPQIRKILLDVR------------------------PDRQTVMTSAT 207 (228)
T ss_dssp HHHHHTTC---CCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSC------------------------SSCEEEEEESC
T ss_pred HHHHHcCC---cCcccceEEEEECHHHHhccchHHHHHHHHHhCC------------------------cCCeEEEEEee
Confidence 99887653 5688999999999999999999999999999987 67999999999
Q ss_pred ccCc
Q 020452 265 IALS 268 (326)
Q Consensus 265 l~~~ 268 (326)
++..
T Consensus 208 ~~~~ 211 (228)
T 3iuy_A 208 WPDT 211 (228)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 9843
No 3
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=5.2e-37 Score=271.41 Aligned_cols=195 Identities=39% Similarity=0.657 Sum_probs=174.3
Q ss_pred cccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhh
Q 020452 26 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 105 (326)
Q Consensus 26 ~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~ 105 (326)
+...+++..+|+++++++.++++++++||..|+++|.++++.++ +|+|+++++|||+|||++|++|++..+...
T Consensus 35 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~il~~l~~~----- 108 (249)
T 3ber_A 35 PIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGRDIIGLAETGSGKTGAFALPILNALLET----- 108 (249)
T ss_dssp CCHHHHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----
T ss_pred CcCcccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----
Confidence 33445678899999999999999999999999999999999985 899999999999999999999999887542
Q ss_pred hhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHH
Q 020452 106 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 185 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~ 185 (326)
..++++||++||++|+.|+++.++.+....++++..++|+.....+...+..+++|+|+||+++.
T Consensus 109 ---------------~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~ 173 (249)
T 3ber_A 109 ---------------PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLI 173 (249)
T ss_dssp ---------------CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHH
T ss_pred ---------------CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHH
Confidence 23568999999999999999999999988899999999999988887778889999999999999
Q ss_pred HHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 186 ~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
+++.+.. ...+.+++++|+||||++.+++|...+..++..++ ..+|+++||||+
T Consensus 174 ~~l~~~~--~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~------------------------~~~~~l~~SAT~ 227 (249)
T 3ber_A 174 DHLENTK--GFNLRALKYLVMDEADRILNMDFETEVDKILKVIP------------------------RDRKTFLFSATM 227 (249)
T ss_dssp HHHHHST--TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSC------------------------SSSEEEEEESSC
T ss_pred HHHHcCC--CcCccccCEEEEcChhhhhccChHHHHHHHHHhCC------------------------CCCeEEEEeccC
Confidence 9887531 24578899999999999999999999999999887 678999999999
Q ss_pred cC
Q 020452 266 AL 267 (326)
Q Consensus 266 ~~ 267 (326)
+.
T Consensus 228 ~~ 229 (249)
T 3ber_A 228 TK 229 (249)
T ss_dssp CH
T ss_pred CH
Confidence 83
No 4
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.3e-37 Score=270.62 Aligned_cols=199 Identities=31% Similarity=0.546 Sum_probs=160.0
Q ss_pred hhccCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHH
Q 020452 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100 (326)
Q Consensus 21 ~~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~ 100 (326)
++.+.+.+++++..+|+++++++.++++++++||..|+++|.++++.++ +|+|+++++|||+|||++|++|+++.+...
T Consensus 17 ~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~~~li~apTGsGKT~~~~l~~l~~l~~~ 95 (237)
T 3bor_A 17 QGGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCI-KGYDVIAQAQSGTGKTATFAISILQQLEIE 95 (237)
T ss_dssp ----------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEECCCSSHHHHHHHHHHHHHHCCTT
T ss_pred CCCcccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHhc
Confidence 3445566778889999999999999999999999999999999999985 889999999999999999999999876321
Q ss_pred HHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcC-CCEEEe
Q 020452 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKAR-PELVVG 179 (326)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~-~~IlV~ 179 (326)
..+.++||++||++|+.|+++.++.++...++.+..++|+.........+..+ ++|+|+
T Consensus 96 --------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~ 155 (237)
T 3bor_A 96 --------------------FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 155 (237)
T ss_dssp --------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEE
T ss_pred --------------------CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEE
Confidence 23568999999999999999999999888888999999988776665555544 899999
Q ss_pred CcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEE
Q 020452 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTL 259 (326)
Q Consensus 180 Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i 259 (326)
||+++.+++..+. ..+.++++||+||||++.+++|...+..++..++ ..+|++
T Consensus 156 Tp~~l~~~l~~~~---~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~i 208 (237)
T 3bor_A 156 TPGRVFDMLNRRY---LSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLN------------------------TSIQVV 208 (237)
T ss_dssp CHHHHHHHHHTTS---SCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEE
T ss_pred CHHHHHHHHHhCC---cCcccCcEEEECCchHhhccCcHHHHHHHHHhCC------------------------CCCeEE
Confidence 9999999997653 5678899999999999999999999999999987 679999
Q ss_pred EEeeeccC
Q 020452 260 VFSATIAL 267 (326)
Q Consensus 260 ~~SATl~~ 267 (326)
++|||++.
T Consensus 209 ~~SAT~~~ 216 (237)
T 3bor_A 209 LLSATMPT 216 (237)
T ss_dssp EECSSCCH
T ss_pred EEEEecCH
Confidence 99999983
No 5
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.9e-37 Score=274.59 Aligned_cols=200 Identities=36% Similarity=0.594 Sum_probs=171.0
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~ 111 (326)
++.+|+++++++.++++|..+||..|+++|.++++.++ +|+|+++++|||+|||++|++|++..+......
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~-------- 91 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAIL-EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLN-------- 91 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC---------
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhhccc--------
Confidence 78899999999999999999999999999999999985 899999999999999999999999987543110
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC
Q 020452 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~ 191 (326)
........++++||++||++|+.|+++.++.+....++++..++|+.....+...+..+++|+|+||+++.+++..+
T Consensus 92 ---~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 168 (253)
T 1wrb_A 92 ---QQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN 168 (253)
T ss_dssp --------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT
T ss_pred ---cccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 00111234579999999999999999999999988889999999999888777777788999999999999999765
Q ss_pred CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
. ..+.+++++|+||||++++++|...+..++..+.... ...+|++++|||++
T Consensus 169 ~---~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 169 K---ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS--------------------GINRQTLMFSATFP 220 (253)
T ss_dssp S---BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCC--------------------GGGCEEEEEESSCC
T ss_pred C---CChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCC--------------------CCCcEEEEEEEeCC
Confidence 3 5678999999999999999999999999998654210 02689999999997
No 6
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6e-37 Score=292.03 Aligned_cols=204 Identities=33% Similarity=0.585 Sum_probs=181.0
Q ss_pred cCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHh
Q 020452 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 103 (326)
Q Consensus 24 ~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~ 103 (326)
+++.+.|.++.+|++++|++.++++++++||..|+|+|.++||.++ +|+|++++||||||||++|++|++..+....
T Consensus 46 ~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~-~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~-- 122 (434)
T 2db3_A 46 VTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVIS-SGRDLMACAQTGSGKTAAFLLPILSKLLEDP-- 122 (434)
T ss_dssp EESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSC--
T ss_pred ecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEECCCCCCchHHHHHHHHHHHHhcc--
Confidence 3456678899999999999999999999999999999999999985 8999999999999999999999999886532
Q ss_pred hhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHH
Q 020452 104 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183 (326)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~ 183 (326)
......++++||++||++|+.|+++.+++++...++++..++|+.....+...+..+++|+|+||++
T Consensus 123 -------------~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~ 189 (434)
T 2db3_A 123 -------------HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGR 189 (434)
T ss_dssp -------------CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHH
T ss_pred -------------cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHH
Confidence 1122346799999999999999999999999888899999999999988888888899999999999
Q ss_pred HHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEee
Q 020452 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263 (326)
Q Consensus 184 l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 263 (326)
|.+++.++. ..+.+++++|+||||+|++++|...+..++..+... ..+|+++|||
T Consensus 190 l~~~l~~~~---~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~----------------------~~~q~l~~SA 244 (434)
T 2db3_A 190 LLDFVDRTF---ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR----------------------PEHQTLMFSA 244 (434)
T ss_dssp HHHHHHTTS---CCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC----------------------SSCEEEEEES
T ss_pred HHHHHHhCC---cccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC----------------------CCceEEEEec
Confidence 999997653 668899999999999999999999999999876421 5689999999
Q ss_pred eccCc
Q 020452 264 TIALS 268 (326)
Q Consensus 264 Tl~~~ 268 (326)
|++..
T Consensus 245 T~~~~ 249 (434)
T 2db3_A 245 TFPEE 249 (434)
T ss_dssp CCCHH
T ss_pred cCCHH
Confidence 99843
No 7
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.2e-36 Score=264.32 Aligned_cols=197 Identities=29% Similarity=0.540 Sum_probs=165.3
Q ss_pred ccCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHH
Q 020452 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEERE 102 (326)
Q Consensus 23 ~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~ 102 (326)
...+..+++.+.+|+++++++.+++.++++||..|+++|.++++.++ +|+|+++++|||+|||++|++|+++.+...
T Consensus 3 ~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-- 79 (224)
T 1qde_A 3 SQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDTS-- 79 (224)
T ss_dssp --CCBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCTT--
T ss_pred cccccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHHhcc--
Confidence 34455677888999999999999999999999999999999999985 889999999999999999999999876321
Q ss_pred hhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcH
Q 020452 103 KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPG 182 (326)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~ 182 (326)
..++++||++|+++|+.|+++.++.+....++++..++|+.........+. .++|+|+||+
T Consensus 80 ------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~ 140 (224)
T 1qde_A 80 ------------------VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPG 140 (224)
T ss_dssp ------------------CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHH
T ss_pred ------------------CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHH
Confidence 335689999999999999999999998888899999999887665554444 4899999999
Q ss_pred HHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEe
Q 020452 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262 (326)
Q Consensus 183 ~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 262 (326)
++.+.+.+.. ..+.+++++|+||||++.++++...+..++..++ ...|++++|
T Consensus 141 ~l~~~~~~~~---~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~i~lS 193 (224)
T 1qde_A 141 RVFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------------------------PTTQVVLLS 193 (224)
T ss_dssp HHHHHHHTTS---SCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEEEEE
T ss_pred HHHHHHHhCC---cchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCC------------------------ccCeEEEEE
Confidence 9999987653 5678899999999999999999999999999987 678999999
Q ss_pred eeccCc
Q 020452 263 ATIALS 268 (326)
Q Consensus 263 ATl~~~ 268 (326)
||+++.
T Consensus 194 AT~~~~ 199 (224)
T 1qde_A 194 ATMPND 199 (224)
T ss_dssp SSCCHH
T ss_pred eecCHH
Confidence 999843
No 8
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=279.35 Aligned_cols=188 Identities=33% Similarity=0.552 Sum_probs=161.7
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
....+|++++|++.++++|.++||..|+++|.++||.++ .| +|++++||||||||++|++|+++.+..
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il-~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~--------- 158 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLML-AEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP--------- 158 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHT-SSSCCCEEEECCTTSSHHHHHHHHHHHHCCT---------
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCCeEEEECCCCCCccHHHHHHHHHhhhc---------
Confidence 356789999999999999999999999999999999996 55 999999999999999999999987632
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~l 187 (326)
...++++||++||++||.|+++.++.+.... ++.+..++|+...... ...+++|+||||++|+++
T Consensus 159 -----------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~ 224 (300)
T 3fmo_B 159 -----------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDW 224 (300)
T ss_dssp -----------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHH
T ss_pred -----------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHH
Confidence 1346789999999999999999999998764 6788888887764332 145789999999999999
Q ss_pred HhcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 188 MSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 188 l~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
+.+. ....++++++||+||||+|++ .+|...+..++..++ ..+|+++||||++
T Consensus 225 l~~~--~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~------------------------~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 225 CSKL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------RNCQMLLFSATFE 278 (300)
T ss_dssp HTTT--CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC------------------------TTCEEEEEESCCC
T ss_pred HHhc--CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC------------------------CCCEEEEEeccCC
Confidence 9653 235678999999999999998 688889999998887 6799999999998
Q ss_pred Cc
Q 020452 267 LS 268 (326)
Q Consensus 267 ~~ 268 (326)
+.
T Consensus 279 ~~ 280 (300)
T 3fmo_B 279 DS 280 (300)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 9
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.6e-36 Score=265.02 Aligned_cols=192 Identities=28% Similarity=0.490 Sum_probs=163.7
Q ss_pred cccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhh
Q 020452 26 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 105 (326)
Q Consensus 26 ~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~ 105 (326)
....|.+..+|+++++++.++++++++||..|+++|.++++.++ +|+|+++++|||+|||++|++|++..+...
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----- 89 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGR-CGLDLIVQAKSGTGKTCVFSTIALDSLVLE----- 89 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 44556778899999999999999999999999999999999985 899999999999999999999999876321
Q ss_pred hhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH
Q 020452 106 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l 184 (326)
..++++||++||++|+.|+++.++.+.... ++++..++|+.........+ .+++|+|+||+++
T Consensus 90 ---------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l 153 (230)
T 2oxc_A 90 ---------------NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRI 153 (230)
T ss_dssp ---------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHH
T ss_pred ---------------CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHH
Confidence 235689999999999999999999998765 78999999998876665554 4789999999999
Q ss_pred HHHHhcCCcccccCCCeeEEeecchhHhhhCC-CHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEee
Q 020452 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENG-HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263 (326)
Q Consensus 185 ~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~-~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 263 (326)
.+++..+. ..+.+++++|+||||++++++ |...+..++..++ ..+|++++||
T Consensus 154 ~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~------------------------~~~~~l~lSA 206 (230)
T 2oxc_A 154 KQLIELDY---LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP------------------------ASKQMLAVSA 206 (230)
T ss_dssp HHHHHTTS---SCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC------------------------SSCEEEEEES
T ss_pred HHHHhcCC---cccccCCEEEeCCchHhhcCcchHHHHHHHHHhCC------------------------CCCeEEEEEe
Confidence 99987653 557789999999999999887 9999999999988 6789999999
Q ss_pred ecc
Q 020452 264 TIA 266 (326)
Q Consensus 264 Tl~ 266 (326)
|++
T Consensus 207 T~~ 209 (230)
T 2oxc_A 207 TYP 209 (230)
T ss_dssp CCC
T ss_pred ccC
Confidence 997
No 10
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.6e-36 Score=259.97 Aligned_cols=185 Identities=35% Similarity=0.636 Sum_probs=166.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
.+|+++++++.+++++.++||..|+++|.++++.++ +|+|+++++|||+|||++|++|++..+..
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------------- 67 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIAL-SGRDILARAKNGTGKSGAYLIPLLERLDL-------------- 67 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHH-TTCCEEEECCSSSTTHHHHHHHHHHHCCT--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHc-cCCCEEEECCCCCchHHHHHHHHHHHhcc--------------
Confidence 479999999999999999999999999999999985 89999999999999999999999987622
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~ 192 (326)
...++++||++||++|+.|+++.++.+.+.. ++++..++|+.........+..+++|+|+||+++.+.+.++.
T Consensus 68 ------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 68 ------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp ------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC
T ss_pred ------cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC
Confidence 1335689999999999999999999998776 788999999999887777777889999999999999987653
Q ss_pred cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
..+.+++++|+||||++.+.++...+..++..++ ...|++++|||++
T Consensus 142 ---~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~l~~SAT~~ 188 (206)
T 1vec_A 142 ---AKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP------------------------KNRQILLYSATFP 188 (206)
T ss_dssp ---SCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSC------------------------TTCEEEEEESCCC
T ss_pred ---cCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCC------------------------ccceEEEEEeeCC
Confidence 5678899999999999999999999999999987 6789999999998
No 11
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=5.9e-37 Score=265.61 Aligned_cols=187 Identities=35% Similarity=0.612 Sum_probs=164.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
..+|+++++++.++++++++||..|+++|.++++.++ +|+|+++++|||+|||++|++|+++.+...
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~------------ 69 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGAL-RGESMVGQSQTGTGKTHAYLLPIMEKIKPE------------ 69 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCSSHHHHHHHHHHHHHHCCTT------------
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhC------------
Confidence 3579999999999999999999999999999999985 889999999999999999999999876321
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC----CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI----NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll 188 (326)
..++++||++||++|+.|+++.++.+.... ++.+..++|+.........+..+++|+|+||+++.+++
T Consensus 70 --------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l 141 (219)
T 1q0u_A 70 --------RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFI 141 (219)
T ss_dssp --------SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHH
T ss_pred --------cCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHH
Confidence 235689999999999999999999998876 68888899988765554444557899999999999998
Q ss_pred hcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
..+. ..+.+++++|+||||++.++++...+..++..++ ..+|++++|||++.
T Consensus 142 ~~~~---~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 142 REQA---LDVHTAHILVVDEADLMLDMGFITDVDQIAARMP------------------------KDLQMLVFSATIPE 193 (219)
T ss_dssp HTTC---CCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC------------------------TTCEEEEEESCCCG
T ss_pred HcCC---CCcCcceEEEEcCchHHhhhChHHHHHHHHHhCC------------------------cccEEEEEecCCCH
Confidence 7653 5578899999999999999999999999999887 67899999999974
No 12
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=4e-36 Score=267.67 Aligned_cols=192 Identities=36% Similarity=0.553 Sum_probs=166.8
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020452 34 DAWNELR--LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111 (326)
Q Consensus 34 ~~f~~l~--l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~ 111 (326)
.+|++++ +++.++++++++||..|+++|.++++.++ .|+|+++++|||||||++|++|+++.+...+
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~---------- 120 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLL-EGRDLLAAAKTGSGKTLAFLIPAVELIVKLR---------- 120 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHH-HTCCCEECCCTTSCHHHHHHHHHHHHHHHTT----------
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCCchHHHHHHHHHHHHhcc----------
Confidence 3566776 99999999999999999999999999985 7899999999999999999999999886531
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC
Q 020452 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~ 191 (326)
.....+.++||++||++|+.|+++.++.++...+..+..++|+.........+..+++|+|+||+++.+++...
T Consensus 121 ------~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~ 194 (262)
T 3ly5_A 121 ------FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT 194 (262)
T ss_dssp ------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHC
T ss_pred ------ccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHcc
Confidence 11123568999999999999999999999998899999999999988888888888999999999999988654
Q ss_pred CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
. ...+.+++++|+||||++++++|...+..++..++ ..+|+++||||++..
T Consensus 195 ~--~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~------------------------~~~q~l~~SAT~~~~ 245 (262)
T 3ly5_A 195 P--GFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP------------------------TRRQTMLFSATQTRK 245 (262)
T ss_dssp T--TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSC------------------------SSSEEEEECSSCCHH
T ss_pred C--CcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCC------------------------CCCeEEEEEecCCHH
Confidence 2 24578899999999999999999999999999998 678999999999844
No 13
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=8.9e-36 Score=261.03 Aligned_cols=194 Identities=38% Similarity=0.566 Sum_probs=167.4
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020452 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 109 (326)
Q Consensus 30 ~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~ 109 (326)
++++.+|+++++++.++++|+++||..|+++|.++++.++ +|+|+++++|||+|||++|++|+++.+....
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~-------- 91 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLAL-QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ-------- 91 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHTT--------
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhc--------
Confidence 4667889999999999999999999999999999999985 8999999999999999999999999876431
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHh
Q 020452 110 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~ 189 (326)
.....++++||++||++|+.|+++.++.+....++++..++|+.........+ .+++|+|+||+++.+.+.
T Consensus 92 --------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~ 162 (236)
T 2pl3_A 92 --------WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMD 162 (236)
T ss_dssp --------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHH
T ss_pred --------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHH
Confidence 11123568999999999999999999999888889999999988766555544 478999999999999886
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
... ...+.+++++|+||||++.+++|...+..++..++ ..+|++++|||++.
T Consensus 163 ~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 163 ETV--SFHATDLQMLVLDEADRILDMGFADTMNAVIENLP------------------------KKRQTLLFSATQTK 214 (236)
T ss_dssp HCS--SCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSC------------------------TTSEEEEEESSCCH
T ss_pred hcC--CcccccccEEEEeChHHHhcCCcHHHHHHHHHhCC------------------------CCCeEEEEEeeCCH
Confidence 532 24578899999999999999999999999999988 67899999999983
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2.1e-35 Score=253.07 Aligned_cols=186 Identities=42% Similarity=0.675 Sum_probs=164.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
+|+++++++.++++++++||..|+++|.++++.++ +|+++++++|||+|||++|++|++..+...
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~l~~~-------------- 66 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLAL-EGKDLIGQARTGTGKTLAFALPIAERLAPS-------------- 66 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCCC--------------
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHc-CCCCEEEECCCCChHHHHHHHHHHHHHhhc--------------
Confidence 69999999999999999999999999999999985 899999999999999999999999876321
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
.....++++||++|+++|+.|+++.++.+... +++..++|+.........+..+++|+|+||+++.+++..+.
T Consensus 67 ---~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-- 139 (207)
T 2gxq_A 67 ---QERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGV-- 139 (207)
T ss_dssp ---CCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTS--
T ss_pred ---cccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCC--
Confidence 11234678999999999999999999998764 67888999988777777777789999999999999987643
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
..+.+++++|+||||++.+.++...+..++..++ ...|++++|||+++
T Consensus 140 -~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 140 -LDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP------------------------PSRQTLLFSATLPS 187 (207)
T ss_dssp -SCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSC------------------------TTSEEEEECSSCCH
T ss_pred -cchhhceEEEEEChhHhhccchHHHHHHHHHhCC------------------------ccCeEEEEEEecCH
Confidence 5678899999999999999999999999999887 67899999999984
No 15
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-35 Score=255.90 Aligned_cols=194 Identities=36% Similarity=0.645 Sum_probs=163.5
Q ss_pred ccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 020452 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGK 106 (326)
Q Consensus 27 ~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~ 106 (326)
...+....+|+++++++.++++|+++||..|+++|.++++.++ +++|+++++|||+|||++|++|++..+..
T Consensus 7 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~~~~------- 78 (220)
T 1t6n_A 7 SYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEP------- 78 (220)
T ss_dssp -------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCC-------
T ss_pred CcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCchhhhhhHHHHHhhhc-------
Confidence 3444566689999999999999999999999999999999985 78999999999999999999999987521
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhc-CCCEEEeCcHHH
Q 020452 107 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKA-RPELVVGTPGRL 184 (326)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l 184 (326)
..+++++||++||++|+.|+++.++.+.... ++++..++|+.........+.. .++|+|+||+++
T Consensus 79 -------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l 145 (220)
T 1t6n_A 79 -------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 145 (220)
T ss_dssp -------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHH
T ss_pred -------------cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHH
Confidence 1235689999999999999999999998765 7899999999887776665554 579999999999
Q ss_pred HHHHhcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEee
Q 020452 185 WELMSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263 (326)
Q Consensus 185 ~~ll~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 263 (326)
.+++.... ..+.+++++|+||||++++ .++...+..++..++ ...|++++||
T Consensus 146 ~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SA 198 (220)
T 1t6n_A 146 LALARNKS---LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSA 198 (220)
T ss_dssp HHHHHTTS---SCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC------------------------SSSEEEEEES
T ss_pred HHHHHhCC---CCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC------------------------CcCeEEEEEe
Confidence 99987653 5678999999999999986 477788888888877 6789999999
Q ss_pred eccCc
Q 020452 264 TIALS 268 (326)
Q Consensus 264 Tl~~~ 268 (326)
|+++.
T Consensus 199 T~~~~ 203 (220)
T 1t6n_A 199 TLSKE 203 (220)
T ss_dssp CCCTT
T ss_pred ecCHH
Confidence 99854
No 16
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=260.86 Aligned_cols=198 Identities=33% Similarity=0.547 Sum_probs=163.7
Q ss_pred CcccccccccccccC----CCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHH
Q 020452 25 SEAEISTEFDAWNEL----RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100 (326)
Q Consensus 25 ~~~~~~~~~~~f~~l----~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~ 100 (326)
.+.+.|.++.+|+++ ++++.+++++.++||..|+++|.++++.++ +|+|+++++|||+|||++|++|++..+..
T Consensus 16 ~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~- 93 (245)
T 3dkp_A 16 QGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVML-HGRELLASAPTGSGKTLAFSIPILMQLKQ- 93 (245)
T ss_dssp ESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHCS-
T ss_pred cCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHhh-
Confidence 345678899999988 899999999999999999999999999985 89999999999999999999999987721
Q ss_pred HHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHH-HHHhcCCCEEEe
Q 020452 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE-RLLKARPELVVG 179 (326)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~-~~~~~~~~IlV~ 179 (326)
....++++||++||++|+.|+++.++.++...++++..++|+....... .....+++|+|+
T Consensus 94 ------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~ 155 (245)
T 3dkp_A 94 ------------------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVT 155 (245)
T ss_dssp ------------------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEE
T ss_pred ------------------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEE
Confidence 1234668999999999999999999999988888887777654322211 112346899999
Q ss_pred CcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh---CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCc
Q 020452 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE---NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256 (326)
Q Consensus 180 Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~---~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (326)
||+++.+++.... ....+.+++++|+||||++++ .+|...+..++..+.. .+.
T Consensus 156 Tp~~l~~~l~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~-----------------------~~~ 211 (245)
T 3dkp_A 156 TPNRLIYLLKQDP-PGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS-----------------------HKV 211 (245)
T ss_dssp CHHHHHHHHHSSS-CSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC-----------------------TTC
T ss_pred CHHHHHHHHHhCC-CCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC-----------------------CCc
Confidence 9999999997642 235688999999999999998 4677888888877642 568
Q ss_pred eEEEEeeecc
Q 020452 257 QTLVFSATIA 266 (326)
Q Consensus 257 q~i~~SATl~ 266 (326)
|+++||||++
T Consensus 212 ~~~~~SAT~~ 221 (245)
T 3dkp_A 212 RRAMFSATFA 221 (245)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEeccCC
Confidence 9999999997
No 17
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.7e-34 Score=269.62 Aligned_cols=218 Identities=31% Similarity=0.507 Sum_probs=178.7
Q ss_pred CcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhh
Q 020452 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104 (326)
Q Consensus 25 ~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~ 104 (326)
.+..+|+++.+|+++++++.++++|+.+||..|+|+|.++|+.++ +|+|+++++|||+|||++|++|+++.+.......
T Consensus 6 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~ 84 (417)
T 2i4i_A 6 TGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIK-EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGE 84 (417)
T ss_dssp ESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCH
T ss_pred CCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHc-cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccc
Confidence 345678889999999999999999999999999999999999985 8999999999999999999999999886542110
Q ss_pred hhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH
Q 020452 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l 184 (326)
. ...............++++||++||++|+.|+++.++.+....++++..++|+.....+...+..+++|+|+||++|
T Consensus 85 ~--~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 85 A--LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp H--HHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred h--hhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 0 00000000011123357899999999999999999999998889999999999999888888888899999999999
Q ss_pred HHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeee
Q 020452 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264 (326)
Q Consensus 185 ~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SAT 264 (326)
.+++..+. ..+.++++||+||||++.+++|...+..++....... ....|++++|||
T Consensus 163 ~~~l~~~~---~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~~~i~~SAT 219 (417)
T 2i4i_A 163 VDMMERGK---IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP--------------------KGVRHTMMFSAT 219 (417)
T ss_dssp HHHHHTTS---BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCC--------------------BTTBEEEEEESC
T ss_pred HHHHHcCC---cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCC--------------------cCCcEEEEEEEe
Confidence 99997653 5688899999999999999999999999987543110 136899999999
Q ss_pred ccCc
Q 020452 265 IALS 268 (326)
Q Consensus 265 l~~~ 268 (326)
++..
T Consensus 220 ~~~~ 223 (417)
T 2i4i_A 220 FPKE 223 (417)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 9743
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.1e-33 Score=263.65 Aligned_cols=192 Identities=30% Similarity=0.543 Sum_probs=171.9
Q ss_pred cccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 020452 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 107 (326)
Q Consensus 28 ~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~ 107 (326)
+.++...+|+++++++.++++++++||..|+|+|.++++.++ +|+|+++++|||+|||++|++|+++.+..
T Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------- 101 (410)
T 2j0s_A 31 EEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQSQSGTGKTATFSISVLQCLDI-------- 101 (410)
T ss_dssp TTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHTCCT--------
T ss_pred CCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCCchHHHHHHHHHHHhh--------
Confidence 334566789999999999999999999999999999999985 89999999999999999999999987521
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHH
Q 020452 108 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~l 187 (326)
...+.++||++||++|+.|+++.+..+....++.+..++|+.........+..+++|+|+||+++.++
T Consensus 102 ------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~ 169 (410)
T 2j0s_A 102 ------------QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 169 (410)
T ss_dssp ------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred ------------ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHH
Confidence 12356899999999999999999999998889999999999998888888888899999999999999
Q ss_pred HhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 188 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 188 l~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
+..+. ..+.++++||+||||++.++++...+..++..++ ...|++++|||++.
T Consensus 170 l~~~~---~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~ 222 (410)
T 2j0s_A 170 IRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP------------------------PATQVVLISATLPH 222 (410)
T ss_dssp HHTTS---SCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSC------------------------TTCEEEEEESCCCH
T ss_pred HHhCC---ccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCc------------------------cCceEEEEEcCCCH
Confidence 97653 5678899999999999999999999999998887 67899999999974
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=260.09 Aligned_cols=203 Identities=30% Similarity=0.547 Sum_probs=174.6
Q ss_pred CcchhhccCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHH
Q 020452 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQR 96 (326)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~ 96 (326)
...+.+......++....+|+++++++.+++.++++||..|+++|.++++.++ +|+++++++|||+|||++|++|+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~ 101 (414)
T 3eiq_A 23 DGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQ 101 (414)
T ss_dssp -------CCCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEECCCSCSSSHHHHHHHHHHH
T ss_pred cccccccccCCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHh-CCCCEEEECCCCCcccHHHHHHHHHH
Confidence 34455555666778888999999999999999999999999999999999985 89999999999999999999999987
Q ss_pred HHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh-cCCC
Q 020452 97 LLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPE 175 (326)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~ 175 (326)
+... ..+.++||++|+++|+.|+++.++.++...+..+..++|+.........+. .+++
T Consensus 102 ~~~~--------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (414)
T 3eiq_A 102 IELD--------------------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPH 161 (414)
T ss_dssp CCTT--------------------SCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCS
T ss_pred Hhhc--------------------CCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCC
Confidence 6321 235689999999999999999999999888899999999988877766655 6789
Q ss_pred EEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCC
Q 020452 176 LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK 255 (326)
Q Consensus 176 IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (326)
|+|+||++|.+++..+. ..+.++++||+||||++.++++...+..++..++ ..
T Consensus 162 iiv~T~~~l~~~l~~~~---~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~------------------------~~ 214 (414)
T 3eiq_A 162 IIVGTPGRVFDMLNRRY---LSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN------------------------SN 214 (414)
T ss_dssp EEEECHHHHHHHHHHTS---SCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSC------------------------TT
T ss_pred EEEECHHHHHHHHHcCC---cccccCcEEEEECHHHhhccCcHHHHHHHHHhCC------------------------CC
Confidence 99999999999997653 5678899999999999999999999999998887 67
Q ss_pred ceEEEEeeeccC
Q 020452 256 RQTLVFSATIAL 267 (326)
Q Consensus 256 ~q~i~~SATl~~ 267 (326)
.|++++|||++.
T Consensus 215 ~~~i~~SAT~~~ 226 (414)
T 3eiq_A 215 TQVVLLSATMPS 226 (414)
T ss_dssp CEEEEECSCCCH
T ss_pred CeEEEEEEecCH
Confidence 999999999973
No 20
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=7e-32 Score=252.52 Aligned_cols=191 Identities=30% Similarity=0.561 Sum_probs=168.9
Q ss_pred ccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 29 ~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
+.++..+|+++++++.+++++.++||..|+|+|.++++.++ +|+++++.+|||+|||++|++|++..+...
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-------- 86 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDTS-------- 86 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-HTCCEEECCCSSHHHHHHHHHHHHHHCCTT--------
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhhcc--------
Confidence 44667789999999999999999999999999999999985 789999999999999999999999876321
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll 188 (326)
..++++||++|+++|+.|+++.+..+....++++..++|+.........+. +++|+|+||+++.+.+
T Consensus 87 ------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~ 153 (394)
T 1fuu_A 87 ------------VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNI 153 (394)
T ss_dssp ------------CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHH
T ss_pred ------------CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHH
Confidence 235689999999999999999999999888899999999988776655554 5899999999999988
Q ss_pred hcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.... ..+.+++++|+||||++.++++...+..++..++ ...|++++|||+++.
T Consensus 154 ~~~~---~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~~ 206 (394)
T 1fuu_A 154 QRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------------------------PTTQVVLLSATMPND 206 (394)
T ss_dssp HTTS---SCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEEEECSSCCHH
T ss_pred HhCC---cchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCC------------------------CCceEEEEEEecCHH
Confidence 7653 5578899999999999999999999999999887 678999999999853
No 21
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5e-32 Score=254.46 Aligned_cols=191 Identities=34% Similarity=0.620 Sum_probs=165.8
Q ss_pred ccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 29 ~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
.+.+..+|+++++++.++++|.++||..|+|+|.++++.++ +++++++.+|||+|||++|++|++..+...
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-------- 86 (400)
T 1s2m_A 16 LNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKTAAFVIPTLEKVKPK-------- 86 (400)
T ss_dssp -----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCTTSCHHHHHHHHHHHHCCTT--------
T ss_pred cccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEECCCCcHHHHHHHHHHHHHHhhc--------
Confidence 34556789999999999999999999999999999999985 889999999999999999999999876221
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll 188 (326)
..+.++||++|+++|+.|+++.++.++...++++..++|+.........+..+++|+|+||+++.+++
T Consensus 87 ------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~ 154 (400)
T 1s2m_A 87 ------------LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLA 154 (400)
T ss_dssp ------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHH
T ss_pred ------------cCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHH
Confidence 23568999999999999999999999988899999999999887776667778999999999999988
Q ss_pred hcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
.... ..+.+++++|+||||++.+.++...+..++..++ ...|++++|||++.
T Consensus 155 ~~~~---~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~lSAT~~~ 206 (400)
T 1s2m_A 155 SRKV---ADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP------------------------PTHQSLLFSATFPL 206 (400)
T ss_dssp HTTC---SCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSC------------------------SSCEEEEEESCCCH
T ss_pred HhCC---cccccCCEEEEeCchHhhhhchHHHHHHHHHhCC------------------------cCceEEEEEecCCH
Confidence 7653 5678899999999999998888888888888776 67899999999973
No 22
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.6e-30 Score=240.71 Aligned_cols=188 Identities=36% Similarity=0.655 Sum_probs=165.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~ 111 (326)
...+|+++++++.++++|+++||..|+|+|.++++.++..++++++.+|||+|||++|++|++..+..
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------------ 71 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------------ 71 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------------
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc------------
Confidence 34589999999999999999999999999999999997444799999999999999999999876521
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC
Q 020452 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~ 191 (326)
..+.++||++|+++|+.|+++.+..+....++.+..++|+.........+. +++|+|+||+++.+.+..+
T Consensus 72 ---------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~ 141 (367)
T 1hv8_A 72 ---------NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRG 141 (367)
T ss_dssp ---------SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTT
T ss_pred ---------cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcC
Confidence 235689999999999999999999999888899999999998877666555 6899999999999988765
Q ss_pred CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
. ..+.+++++|+||||++.++++...+..++..++ ...|++++|||++..
T Consensus 142 ~---~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~~ 191 (367)
T 1hv8_A 142 T---LNLKNVKYFILDEADEMLNMGFIKDVEKILNACN------------------------KDKRILLFSATMPRE 191 (367)
T ss_dssp C---SCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC------------------------SSCEEEEECSSCCHH
T ss_pred C---cccccCCEEEEeCchHhhhhchHHHHHHHHHhCC------------------------CCceEEEEeeccCHH
Confidence 3 5578899999999999999999999999998877 678999999999844
No 23
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=5.5e-31 Score=246.34 Aligned_cols=187 Identities=37% Similarity=0.674 Sum_probs=161.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
.+|+++++++.++++|+++||..|+|+|.++++.++ .|+++++.+|||+|||++|++|++..+..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------------- 72 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------- 72 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHT-TTCCEEEECSSCSSHHHHHHHHHHHHCCC--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHhhcc--------------
Confidence 479999999999999999999999999999999985 78999999999999999999999987521
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhc-CCCEEEeCcHHHHHHHhcC
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKA-RPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~ll~~~ 191 (326)
...+.++||++|+++|+.|+++.++.+.... ++++..++|+.........+.. .++|+|+||+++..++...
T Consensus 73 ------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~ 146 (391)
T 1xti_A 73 ------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK 146 (391)
T ss_dssp ------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT
T ss_pred ------cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 1235689999999999999999999998765 7899999999988776665554 4799999999999988765
Q ss_pred CcccccCCCeeEEeecchhHhhhC-CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 192 EKHLVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~-~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
. ..+.+++++|+||||++.++ ++...+..++..++ ...|++++|||++..
T Consensus 147 ~---~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~~ 197 (391)
T 1xti_A 147 S---LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATLSKE 197 (391)
T ss_dssp S---SCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC------------------------SSSEEEEEESSCCST
T ss_pred C---ccccccCEEEEeCHHHHhhccchHHHHHHHHhhCC------------------------CCceEEEEEeeCCHH
Confidence 3 56788999999999999874 67778888888776 678999999999865
No 24
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.97 E-value=3.7e-31 Score=254.87 Aligned_cols=188 Identities=33% Similarity=0.551 Sum_probs=156.7
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
.+..+|++++|++.++++|+++||..|+|+|.++++.++ .+ ++++++||||||||++|++|++..+...
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il-~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-------- 159 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLML-AEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------- 159 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHT-SBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT--------
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc--------
Confidence 346789999999999999999999999999999999996 54 8999999999999999999999876321
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~l 187 (326)
..++++||++||++|+.|+++.++.+.... ++.+....++...... ....++|+|+||+++.++
T Consensus 160 ------------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~ 224 (479)
T 3fmp_B 160 ------------NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDW 224 (479)
T ss_dssp ------------SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHH
T ss_pred ------------CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHH
Confidence 335689999999999999999999988753 5677777776553222 133579999999999999
Q ss_pred HhcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 188 MSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 188 l~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
+.+. ....+.++++||+||||++++ .++...+..+...++ ..+|++++|||++
T Consensus 225 l~~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~ 278 (479)
T 3fmp_B 225 CSKL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------RNCQMLLFSATFE 278 (479)
T ss_dssp HTTS--CCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC------------------------TTSEEEEEESCCC
T ss_pred HHhc--CCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC------------------------ccceEEEEeCCCC
Confidence 9653 235678999999999999997 577777888887777 6799999999998
Q ss_pred Cc
Q 020452 267 LS 268 (326)
Q Consensus 267 ~~ 268 (326)
+.
T Consensus 279 ~~ 280 (479)
T 3fmp_B 279 DS 280 (479)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 25
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.97 E-value=3.5e-31 Score=260.92 Aligned_cols=201 Identities=32% Similarity=0.511 Sum_probs=163.4
Q ss_pred ccccccCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 020452 33 FDAWNELR----LHPLLMKSIYRLGFKEPTPIQKACIPAAAH-QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 107 (326)
Q Consensus 33 ~~~f~~l~----l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~-~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~ 107 (326)
..+|+++. |++.++++++.+||..|+|+|.++|+.++. .++|+++++|||+|||++|++|+++.+....
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~------ 89 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK------ 89 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT------
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcc------
Confidence 33555554 999999999999999999999999999864 4789999999999999999999999886542
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC----CCcEEEEEEcCCCHHHHHHHHh-cCCCEEEeCcH
Q 020452 108 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG----INVRVVPIVGGMSTEKQERLLK-ARPELVVGTPG 182 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~----~~~~v~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~ 182 (326)
.....++++||++||++|+.|+++.++.+... ..+.+..++|+.........+. .+++|+|+||+
T Consensus 90 ----------~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~ 159 (579)
T 3sqw_A 90 ----------FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPG 159 (579)
T ss_dssp ----------TSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHH
T ss_pred ----------ccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHH
Confidence 11234678999999999999999999998642 3467888899988777766654 47999999999
Q ss_pred HHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEe
Q 020452 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262 (326)
Q Consensus 183 ~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 262 (326)
+|.+++... ....+..+++||+||||++++++|...+..++..++..... ....+|+++||
T Consensus 160 ~l~~~l~~~--~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~-----------------~~~~~~~l~~S 220 (579)
T 3sqw_A 160 RLIDVLEKY--SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-----------------SADNIKTLLFS 220 (579)
T ss_dssp HHHHHHHHH--HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-----------------CTTCCEEEEEE
T ss_pred HHHHHHHhc--cccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcc-----------------cccCceEEEEe
Confidence 999988643 12467889999999999999999999999998877521110 11368999999
Q ss_pred eeccCc
Q 020452 263 ATIALS 268 (326)
Q Consensus 263 ATl~~~ 268 (326)
||++..
T Consensus 221 AT~~~~ 226 (579)
T 3sqw_A 221 ATLDDK 226 (579)
T ss_dssp SSCCTH
T ss_pred ccCChH
Confidence 999864
No 26
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=8.2e-31 Score=246.67 Aligned_cols=194 Identities=32% Similarity=0.526 Sum_probs=161.7
Q ss_pred CcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHHH
Q 020452 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGLPIMQRLLEERE 102 (326)
Q Consensus 25 ~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~ 102 (326)
++.....++.+|+++++++.++++|+++||..|+|+|.++++.++ ++ +++++++|||+|||++|++|+++.+...
T Consensus 16 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-- 92 (412)
T 3fht_A 16 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLML-AEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-- 92 (412)
T ss_dssp CTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-SSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--
T ss_pred cCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--
Confidence 344445678899999999999999999999999999999999996 55 8999999999999999999999876321
Q ss_pred hhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCc
Q 020452 103 KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTP 181 (326)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp 181 (326)
..++++||++|+++|+.|+++.++.+.... ++.+....++...... ....++|+|+||
T Consensus 93 ------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~ 151 (412)
T 3fht_A 93 ------------------NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTP 151 (412)
T ss_dssp ------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECH
T ss_pred ------------------CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECc
Confidence 335689999999999999999999997754 5777777777654322 134679999999
Q ss_pred HHHHHHHhcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEE
Q 020452 182 GRLWELMSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLV 260 (326)
Q Consensus 182 ~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~ 260 (326)
+++.+++.+. ....+.++++||+||||++.+ .++...+..+...++ ...|+++
T Consensus 152 ~~l~~~~~~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~ 205 (412)
T 3fht_A 152 GTVLDWCSKL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------RNCQMLL 205 (412)
T ss_dssp HHHHHHHTTS--CSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC------------------------TTCEEEE
T ss_pred hHHHHHHHhc--CCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC------------------------CCceEEE
Confidence 9999998652 235568899999999999986 678888888888887 6789999
Q ss_pred EeeeccCc
Q 020452 261 FSATIALS 268 (326)
Q Consensus 261 ~SATl~~~ 268 (326)
+|||++..
T Consensus 206 ~SAT~~~~ 213 (412)
T 3fht_A 206 FSATFEDS 213 (412)
T ss_dssp EESCCCHH
T ss_pred EEeecCHH
Confidence 99999854
No 27
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=7.8e-31 Score=257.46 Aligned_cols=207 Identities=32% Similarity=0.516 Sum_probs=165.4
Q ss_pred cccccCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 34 DAWNELR----LHPLLMKSIYRLGFKEPTPIQKACIPAAAH-QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 34 ~~f~~l~----l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~-~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
.+|+++. |++.+++++.++||..|+|+|.++|+.++. .++|++++||||+|||++|++|+++.+....
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~------- 140 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK------- 140 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT-------
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcc-------
Confidence 3455553 999999999999999999999999999864 4789999999999999999999999886542
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC----CCcEEEEEEcCCCHHHHHHHH-hcCCCEEEeCcHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG----INVRVVPIVGGMSTEKQERLL-KARPELVVGTPGR 183 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~----~~~~v~~~~g~~~~~~~~~~~-~~~~~IlV~Tp~~ 183 (326)
.....++++|||+||++|+.|+++.++.+... ....+..++|+.........+ ..+++|+|+||++
T Consensus 141 ---------~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~ 211 (563)
T 3i5x_A 141 ---------FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGR 211 (563)
T ss_dssp ---------TSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHH
T ss_pred ---------ccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHH
Confidence 11234568999999999999999999997642 246688889998877766555 4589999999999
Q ss_pred HHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEee
Q 020452 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263 (326)
Q Consensus 184 l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 263 (326)
+.+++.+. ....++++++||+||||++++++|...+..++..++..... ....+|+++|||
T Consensus 212 l~~~l~~~--~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~-----------------~~~~~~~l~~SA 272 (563)
T 3i5x_A 212 LIDVLEKY--SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-----------------SADNIKTLLFSA 272 (563)
T ss_dssp HHHHHHHH--HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-----------------CTTCCEEEEEES
T ss_pred HHHHHHhc--cccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhcccc-----------------CccCceEEEEEc
Confidence 99988653 12457889999999999999999999999998877521111 114689999999
Q ss_pred eccCc-HHHHHHh
Q 020452 264 TIALS-ADFRKKL 275 (326)
Q Consensus 264 Tl~~~-~~~~~~l 275 (326)
|+++. .++..++
T Consensus 273 T~~~~v~~~~~~~ 285 (563)
T 3i5x_A 273 TLDDKVQKLANNI 285 (563)
T ss_dssp SCCTHHHHHTTTT
T ss_pred cCCHHHHHHHHHh
Confidence 99965 3444443
No 28
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=1.2e-30 Score=243.95 Aligned_cols=193 Identities=32% Similarity=0.556 Sum_probs=161.1
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
+...+|+++++++.++++++++||..|+|+|.++++.++ ++ +++++++|||+|||++|++|++..+...
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-------- 72 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLL-HNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-------- 72 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-CSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--------
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCCeEEEECCCCCcHHHHHHHHHHHHhccC--------
Confidence 345789999999999999999999999999999999996 55 8999999999999999999999876321
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll 188 (326)
..+.++||++|+++|+.|+++.++.+....++.+...+++...... ..+++|+|+||+++.+++
T Consensus 73 ------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~ 136 (395)
T 3pey_A 73 ------------DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLM 136 (395)
T ss_dssp ------------CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHH
T ss_pred ------------CCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHH
Confidence 2456899999999999999999999988888888888876543221 236899999999999998
Q ss_pred hcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
.+.. ..+.+++++|+||||++.+ .++...+..+...++ ...|++++|||++.
T Consensus 137 ~~~~---~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~ 189 (395)
T 3pey_A 137 RRKL---MQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP------------------------KDTQLVLFSATFAD 189 (395)
T ss_dssp HTTC---BCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSC------------------------TTCEEEEEESCCCH
T ss_pred HcCC---cccccCCEEEEEChhhhcCccccHHHHHHHHHhCC------------------------CCcEEEEEEecCCH
Confidence 7643 5688899999999999997 677788888888877 67899999999985
Q ss_pred c-HHHHHHh
Q 020452 268 S-ADFRKKL 275 (326)
Q Consensus 268 ~-~~~~~~l 275 (326)
. .++.+++
T Consensus 190 ~~~~~~~~~ 198 (395)
T 3pey_A 190 AVRQYAKKI 198 (395)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 4 3444443
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=3.7e-29 Score=229.02 Aligned_cols=173 Identities=35% Similarity=0.633 Sum_probs=154.1
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
|++.+.++|+++||..|+|+|.++++.++ +++++++.+|||+|||++|++|+++.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~------------------------ 55 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLML-QGKNVVVRAKTGSGKTAAYAIPILEL------------------------ 55 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHH------------------------
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEcCCCCcHHHHHHHHHHhh------------------------
Confidence 57899999999999999999999999985 88999999999999999999998763
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
+.++||++|+++|+.|+++.++.+....+.++..++|+.........+. .++|+|+||+++.+++.... ..+.+
T Consensus 56 --~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~---~~~~~ 129 (337)
T 2z0m_A 56 --GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGV---IDLSS 129 (337)
T ss_dssp --TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTS---CCGGG
T ss_pred --cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCC---cchhh
Confidence 3379999999999999999999998888899999999988877666555 48999999999999887643 45778
Q ss_pred eeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 201 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 201 l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
++++|+||||++.++++...+..++..++ ...+++++|||++..
T Consensus 130 ~~~iViDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~SAT~~~~ 173 (337)
T 2z0m_A 130 FEIVIIDEADLMFEMGFIDDIKIILAQTS------------------------NRKITGLFSATIPEE 173 (337)
T ss_dssp CSEEEEESHHHHHHTTCHHHHHHHHHHCT------------------------TCSEEEEEESCCCHH
T ss_pred CcEEEEEChHHhhccccHHHHHHHHhhCC------------------------cccEEEEEeCcCCHH
Confidence 99999999999999999999999998887 678999999999844
No 30
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.96 E-value=7.3e-30 Score=257.51 Aligned_cols=190 Identities=22% Similarity=0.315 Sum_probs=165.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
+|++++|++.+.+.+++.||..|+++|.++++.++.+++++++++|||||||++|.+++++.+...
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------------- 67 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------------- 67 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------------
Confidence 599999999999999999999999999999998446899999999999999999999999887532
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
+.+++|++|+++|+.|+++.++.+.. .++++..++|+...... ...+++|+|+||+++..++.+..
T Consensus 68 --------~~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~-- 133 (720)
T 2zj8_A 68 --------GGKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGS-- 133 (720)
T ss_dssp --------CSEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTC--
T ss_pred --------CCEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcCh--
Confidence 34899999999999999999965543 48899999998654332 22468999999999998887642
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHH
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 274 (326)
..+++++++|+||+|.+.+++++..+..++..++ ...|+|++|||+++..++.+|
T Consensus 134 -~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------------------------~~~~ii~lSATl~n~~~~~~~ 188 (720)
T 2zj8_A 134 -SWIKDVKILVADEIHLIGSRDRGATLEVILAHML------------------------GKAQIIGLSATIGNPEELAEW 188 (720)
T ss_dssp -TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------------------------TTBEEEEEECCCSCHHHHHHH
T ss_pred -hhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh------------------------cCCeEEEEcCCcCCHHHHHHH
Confidence 4478899999999999998889999999999887 468999999999999999999
Q ss_pred hhc
Q 020452 275 LKH 277 (326)
Q Consensus 275 l~~ 277 (326)
+..
T Consensus 189 l~~ 191 (720)
T 2zj8_A 189 LNA 191 (720)
T ss_dssp TTE
T ss_pred hCC
Confidence 874
No 31
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.96 E-value=2.8e-29 Score=253.04 Aligned_cols=190 Identities=24% Similarity=0.289 Sum_probs=163.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
.+|++++|++.+.+.++++||..|+++|.++++.++.+++++++++|||||||++|.+++++.+...
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------- 74 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN------------- 74 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------------
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------------
Confidence 5799999999999999999999999999999999446899999999999999999999999876421
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCc
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
+.+++|++|+++|+.|+++.++.+ ...++++..++|+...... ...+++|+|+||+++..++.+..
T Consensus 75 ---------~~~il~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~- 140 (715)
T 2va8_A 75 ---------GGKAIYVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHRP- 140 (715)
T ss_dssp ---------CSEEEEECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHCC-
T ss_pred ---------CCeEEEEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCCh-
Confidence 348999999999999999999644 3458899999998764332 12368999999999999887643
Q ss_pred ccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHH
Q 020452 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273 (326)
Q Consensus 194 ~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~ 273 (326)
..++++++||+||+|.+.+.+++..++.++.+++ ..|+|++|||++|.+++.+
T Consensus 141 --~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-------------------------~~~ii~lSATl~n~~~~~~ 193 (715)
T 2va8_A 141 --EWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-------------------------RRNLLALSATISNYKQIAK 193 (715)
T ss_dssp --GGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-------------------------TSEEEEEESCCTTHHHHHH
T ss_pred --hHhhccCEEEEechhhcCCcccchHHHHHHHhcc-------------------------cCcEEEEcCCCCCHHHHHH
Confidence 4478999999999999988889999998888774 4899999999999999999
Q ss_pred Hhhc
Q 020452 274 KLKH 277 (326)
Q Consensus 274 ~l~~ 277 (326)
|+..
T Consensus 194 ~l~~ 197 (715)
T 2va8_A 194 WLGA 197 (715)
T ss_dssp HHTC
T ss_pred HhCC
Confidence 9974
No 32
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.96 E-value=3.1e-29 Score=252.23 Aligned_cols=191 Identities=19% Similarity=0.245 Sum_probs=159.3
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 35 AWNELR--LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 35 ~f~~l~--l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
+|++++ |++.+.+.++++||..|+|+|.++++.+ .+++++++++|||||||++|.+++++.+..
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i-~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------- 67 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKV-FSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------- 67 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHH-TTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHH-hCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------------
Confidence 588898 9999999999999999999999999997 589999999999999999999999987631
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~ 192 (326)
+.+++|++|+++|+.|+++.++.+ ...++++..++|+...... ...+++|+|+||+++..++.+..
T Consensus 68 ----------~~~~l~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~ 133 (702)
T 2p6r_A 68 ----------GGKSLYVVPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRA 133 (702)
T ss_dssp ----------TCCEEEEESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTC
T ss_pred ----------CCcEEEEeCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcCh
Confidence 348999999999999999999644 3458899999998654322 12368999999999999887643
Q ss_pred cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHH
Q 020452 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 272 (326)
..++++++||+||+|.+.+++++..++.++..+... .+..|+|++|||+++..++.
T Consensus 134 ---~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~---------------------~~~~~ii~lSATl~n~~~~~ 189 (702)
T 2p6r_A 134 ---SWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM---------------------NKALRVIGLSATAPNVTEIA 189 (702)
T ss_dssp ---SGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH---------------------CTTCEEEEEECCCTTHHHHH
T ss_pred ---hHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc---------------------CcCceEEEECCCcCCHHHHH
Confidence 447889999999999999888998888888776411 05689999999999999999
Q ss_pred HHhhc
Q 020452 273 KKLKH 277 (326)
Q Consensus 273 ~~l~~ 277 (326)
+|+..
T Consensus 190 ~~l~~ 194 (702)
T 2p6r_A 190 EWLDA 194 (702)
T ss_dssp HHTTC
T ss_pred HHhCC
Confidence 99974
No 33
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=1.3e-28 Score=265.11 Aligned_cols=191 Identities=17% Similarity=0.220 Sum_probs=151.5
Q ss_pred CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 53 GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
||+.++++|.+++|.++.+++|++++||||||||++|.+++++.+.+.... .......+.++||++|+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~------------~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINM------------DGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCT------------TSSCCTTSCEEEEECSS
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccc------------cccccCCCCEEEEECCH
Confidence 899999999999999988899999999999999999999999988543110 01223456799999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
++||.|+++.+++.+...|++|..++|+...... ...+++|+|+|||++..++++. .....++++++||+||+|.+
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~-~~~~~l~~v~~vIiDEvH~l 219 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKG-GERTYTQLVRLIILDEIHLL 219 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSS-TTHHHHTTEEEEEETTGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCC-ccchhhcCcCEEEEecchhc
Confidence 9999999999999999999999999999765332 2346899999999976565543 22345789999999999977
Q ss_pred hhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 213 ~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
.+ .++..++.++.++... ........|+|++|||++|.+++++||..
T Consensus 220 ~d-~RG~~lE~~l~rl~~~-----------------~~~~~~~~riI~LSATl~N~~dvA~wL~~ 266 (1724)
T 4f92_B 220 HD-DRGPVLEALVARAIRN-----------------IEMTQEDVRLIGLSATLPNYEDVATFLRV 266 (1724)
T ss_dssp GS-TTHHHHHHHHHHHHHH-----------------HHHHTCCCEEEEEECSCTTHHHHHHHTTC
T ss_pred CC-ccHHHHHHHHHHHHHH-----------------HHhCCCCCcEEEEecccCCHHHHHHHhCC
Confidence 65 6888887777654200 00001568999999999999999999974
No 34
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=2.6e-28 Score=262.78 Aligned_cols=195 Identities=25% Similarity=0.309 Sum_probs=157.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
|++...+++...+|..++|+|.++++.++..+.|++++||||||||++|.+|+++.+.+.
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-------------------- 970 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-------------------- 970 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC--------------------
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC--------------------
Confidence 556777888888999999999999999987889999999999999999999999988643
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHH-cCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVA-KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~-~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.+.++||++|+++||.|+++.|++.+ ...+++|+.++|+...... ...+++|+|+|||++..++++. .....++
T Consensus 971 -~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~-~~~~~l~ 1045 (1724)
T 4f92_B 971 -SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRW-KQRKNVQ 1045 (1724)
T ss_dssp -TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTT-TTCHHHH
T ss_pred -CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCc-ccccccc
Confidence 23489999999999999999998755 4578999999998654332 2345899999999987777653 2334578
Q ss_pred CeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhcc
Q 020452 200 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 278 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~ 278 (326)
++++||+||+|.+.+ .++..++.++.++.. +......+.|+|++|||++|.+++++||...
T Consensus 1046 ~v~lvViDE~H~l~d-~rg~~le~il~rl~~-----------------i~~~~~~~~riI~lSATl~N~~dla~WL~~~ 1106 (1724)
T 4f92_B 1046 NINLFVVDEVHLIGG-ENGPVLEVICSRMRY-----------------ISSQIERPIRIVALSSSLSNAKDVAHWLGCS 1106 (1724)
T ss_dssp SCSEEEECCGGGGGS-TTHHHHHHHHHHHHH-----------------HHHTTSSCCEEEEEESCBTTHHHHHHHHTCC
T ss_pred eeeEEEeechhhcCC-CCCccHHHHHHHHHH-----------------HHhhcCCCceEEEEeCCCCCHHHHHHHhCCC
Confidence 999999999998876 577777777765531 1111126789999999999999999999754
No 35
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-28 Score=255.27 Aligned_cols=183 Identities=20% Similarity=0.223 Sum_probs=160.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
...|..+++++.+...+...++..|+++|.++|+.+ .+|++++++||||||||++|.+|++..+.
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i-~~g~dvLV~ApTGSGKTlva~l~i~~~l~-------------- 225 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCI-DRGESVLVSAHTSAGKTVVAEYAIAQSLK-------------- 225 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHH-TTTCCEEEECCSSSHHHHHHHHHHHHHHH--------------
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHH-HcCCCEEEECCCCCChHHHHHHHHHHHHh--------------
Confidence 447888899988888887777779999999999998 58999999999999999999999998762
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~ 192 (326)
.+.++||++||++|+.|+++.+..++. .++.++|+... ..+++|+|+||++|.+++.++.
T Consensus 226 ---------~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~ 285 (1108)
T 3l9o_A 226 ---------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGS 285 (1108)
T ss_dssp ---------TTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCS
T ss_pred ---------cCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCc
Confidence 145899999999999999999999865 67778888763 3468999999999999987653
Q ss_pred cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHH
Q 020452 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 272 (326)
..+.++++|||||||++.+++++..+..++..++ ..+|+|+||||+++..++.
T Consensus 286 ---~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~------------------------~~~qvl~lSATipn~~e~a 338 (1108)
T 3l9o_A 286 ---EVMREVAWVIFDEVHYMRDKERGVVWEETIILLP------------------------DKVRYVFLSATIPNAMEFA 338 (1108)
T ss_dssp ---SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSC------------------------TTSEEEEEECSCSSCHHHH
T ss_pred ---cccccCCEEEEhhhhhccccchHHHHHHHHHhcC------------------------CCceEEEEcCCCCCHHHHH
Confidence 4578899999999999999899999999999998 7899999999999999999
Q ss_pred HHhhc
Q 020452 273 KKLKH 277 (326)
Q Consensus 273 ~~l~~ 277 (326)
+|+..
T Consensus 339 ~~l~~ 343 (1108)
T 3l9o_A 339 EWICK 343 (1108)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99864
No 36
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.95 E-value=3.4e-28 Score=235.95 Aligned_cols=198 Identities=25% Similarity=0.413 Sum_probs=134.8
Q ss_pred cccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHh
Q 020452 26 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREK 103 (326)
Q Consensus 26 ~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~ 103 (326)
..+.|..+..|...++++.+++.+.+.||..|+++|.++++.++ ++ +++++++|||+|||++|+++++..+...
T Consensus 111 ~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~-~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~--- 186 (508)
T 3fho_A 111 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLL-SNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS--- 186 (508)
T ss_dssp ----------------------------CEECCCTTSSSHHHHH-CSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT---
T ss_pred ccccccccccccccccccccccccccccccCcHHHHHHHHHHHH-cCCCCCEEEECCCCccHHHHHHHHHHHHHHhC---
Confidence 33445667778888999999999999999999999999999996 55 8999999999999999999999876321
Q ss_pred hhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHH
Q 020452 104 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183 (326)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~ 183 (326)
..++++||++|+++|+.|+++.++.++...++.+....++..... ...+++|+|+||++
T Consensus 187 -----------------~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~ 245 (508)
T 3fho_A 187 -----------------VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGT 245 (508)
T ss_dssp -----------------CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHH
T ss_pred -----------------CCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHH
Confidence 235689999999999999999999998777776666555543322 23368999999999
Q ss_pred HHHHHhcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEe
Q 020452 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262 (326)
Q Consensus 184 l~~ll~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 262 (326)
+.+.+.... ..+.++++||+||||++.+ .++...+..++..++ ...|++++|
T Consensus 246 l~~~l~~~~---~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~lS 298 (508)
T 3fho_A 246 VMDLMKRRQ---LDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP------------------------RNTQIVLFS 298 (508)
T ss_dssp HHHHHHTTC---SCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSC------------------------TTCEEEEEE
T ss_pred HHHHHHcCC---ccccCCCEEEEechhhhcccCCcHHHHHHHHHhCC------------------------cCCeEEEEe
Confidence 999887653 5678899999999999987 678888999998887 678999999
Q ss_pred eeccCc-HHHHHHh
Q 020452 263 ATIALS-ADFRKKL 275 (326)
Q Consensus 263 ATl~~~-~~~~~~l 275 (326)
||+++. ..+..++
T Consensus 299 AT~~~~~~~~~~~~ 312 (508)
T 3fho_A 299 ATFSERVEKYAERF 312 (508)
T ss_dssp SCCSTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 999864 4444444
No 37
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.95 E-value=3.1e-27 Score=223.29 Aligned_cols=179 Identities=19% Similarity=0.187 Sum_probs=139.3
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 020452 44 LLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122 (326)
Q Consensus 44 ~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (326)
.+.+.+++ +|| .|+|+|.++++.++ +|+|+++++|||+|||++|++|++... ..
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~l~~~~~~~-----------------------~~ 63 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLA-----------------------RK 63 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHT-TTCCEECCSCSSSSHHHHHHHHHHHHH-----------------------TT
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHh-----------------------cC
Confidence 34555655 577 89999999999995 889999999999999999999887764 22
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCH---HHHHHHHhcC-CCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST---EKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~---~~~~~~~~~~-~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
++++||++||++|+.|+++.++.++. .++++..++|+... ..+...+..+ ++|+|+||+++.+++.. ..+
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~ 137 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQ 137 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hcc
Confidence 56899999999999999999999887 78999999999987 4445555554 99999999999888752 556
Q ss_pred CCeeEEeecchhHhhh-----------CCCHHH-HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeee-c
Q 020452 199 HTLSFFVLDEADRMIE-----------NGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT-I 265 (326)
Q Consensus 199 ~~l~~lViDEah~l~~-----------~~~~~~-i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SAT-l 265 (326)
.++++||+||||++.+ .+|... +..++..++...... .-......|++++||| .
T Consensus 138 ~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~-------------~l~~~~~~~~i~~SAT~~ 204 (414)
T 3oiy_A 138 KRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYE-------------RPKNLKPGILVVSSATAK 204 (414)
T ss_dssp CCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCC-------------CCTTCCCCEEEESSCCSS
T ss_pred ccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhh-------------hcccCCCceEEEEecCCC
Confidence 7899999999987653 667666 777777664100000 0000145899999999 4
Q ss_pred c
Q 020452 266 A 266 (326)
Q Consensus 266 ~ 266 (326)
+
T Consensus 205 ~ 205 (414)
T 3oiy_A 205 P 205 (414)
T ss_dssp C
T ss_pred c
Confidence 5
No 38
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.94 E-value=1e-26 Score=228.73 Aligned_cols=188 Identities=20% Similarity=0.256 Sum_probs=147.6
Q ss_pred cccccc--cCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 32 EFDAWN--ELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 32 ~~~~f~--~l~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
....|+ ++++++.+.+.|+. +||..|+|+|.++|+.++ +|+|+++.+|||+|||++|++|++..
T Consensus 17 ~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il-~g~d~lv~~pTGsGKTl~~~lpal~~------------ 83 (591)
T 2v1x_A 17 SPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTM-AGKEVFLVMPTGGGKSLCYQLPALCS------------ 83 (591)
T ss_dssp CGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHH-TTCCEEEECCTTSCTTHHHHHHHHTS------------
T ss_pred chhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEEECCCChHHHHHHHHHHHc------------
Confidence 334554 58899999999998 799999999999999995 89999999999999999999999752
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH------hcCCCEEEeCcH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL------KARPELVVGTPG 182 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~------~~~~~IlV~Tp~ 182 (326)
..++|||+|+++|+.|+.+.+..+ ++++..++|+.........+ ...++|+|+||+
T Consensus 84 --------------~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 84 --------------DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp --------------SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred --------------CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 238999999999999999999987 78889999998876554332 347899999999
Q ss_pred HHHH---HHhcCCcccccCCCeeEEeecchhHhhhCC--CHHHHH---HHHHhCCCCCCCCCCCcccccccccccccCCC
Q 020452 183 RLWE---LMSGGEKHLVELHTLSFFVLDEADRMIENG--HFRELQ---SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 254 (326)
Q Consensus 183 ~l~~---ll~~~~~~~~~l~~l~~lViDEah~l~~~~--~~~~i~---~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (326)
+|.. ++... .....+.+++++||||||++.+++ |...+. .+...+ +
T Consensus 146 ~L~~~~~~~~~l-~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~-------------------------~ 199 (591)
T 2v1x_A 146 KIAKSKMFMSRL-EKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF-------------------------P 199 (591)
T ss_dssp HHHSCHHHHHHH-HHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC-------------------------T
T ss_pred HhhccHHHHHHH-HhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhC-------------------------C
Confidence 8742 22110 112457789999999999999887 544433 233333 4
Q ss_pred CceEEEEeeeccCc--HHHHHHhh
Q 020452 255 KRQTLVFSATIALS--ADFRKKLK 276 (326)
Q Consensus 255 ~~q~i~~SATl~~~--~~~~~~l~ 276 (326)
..|++++|||++.. .++.++|.
T Consensus 200 ~~~ii~lSAT~~~~v~~~i~~~l~ 223 (591)
T 2v1x_A 200 NASLIGLTATATNHVLTDAQKILC 223 (591)
T ss_dssp TSEEEEEESSCCHHHHHHHHHHTT
T ss_pred CCcEEEEecCCCHHHHHHHHHHhC
Confidence 58999999999854 45566664
No 39
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.94 E-value=1.3e-26 Score=225.27 Aligned_cols=185 Identities=19% Similarity=0.235 Sum_probs=147.7
Q ss_pred ccccccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~ 111 (326)
+.+|++++|++.+.+.|++ +||..|+|+|.++|+.++ +|+|+++.+|||+|||++|++|++..
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il-~g~d~lv~apTGsGKTl~~~lp~l~~--------------- 64 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVL-SGRDCLVVMPTGGGKSLCYQIPALLL--------------- 64 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHS---------------
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEECCCCcHHHHHHHHHHHHh---------------
Confidence 3589999999999999998 999999999999999995 89999999999999999999998742
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH----HHhcCCCEEEeCcHHHHHH
Q 020452 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER----LLKARPELVVGTPGRLWEL 187 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~----~~~~~~~IlV~Tp~~l~~l 187 (326)
..++||++|+++|+.|+.+.++.+ ++.+..++|+........ .....++|+|+||+++...
T Consensus 65 -----------~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~ 129 (523)
T 1oyw_A 65 -----------NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD 129 (523)
T ss_dssp -----------SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTST
T ss_pred -----------CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh
Confidence 237999999999999999999875 788888998887655432 2235689999999998422
Q ss_pred HhcCCcccccCCCeeEEeecchhHhhhCC--CHHH---HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEe
Q 020452 188 MSGGEKHLVELHTLSFFVLDEADRMIENG--HFRE---LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262 (326)
Q Consensus 188 l~~~~~~~~~l~~l~~lViDEah~l~~~~--~~~~---i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 262 (326)
. ........++++||+||||++.++| |... +..+...++ ..|++++|
T Consensus 130 ~---~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-------------------------~~~~i~lS 181 (523)
T 1oyw_A 130 N---FLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-------------------------TLPFMALT 181 (523)
T ss_dssp T---HHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-------------------------TSCEEEEE
T ss_pred H---HHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-------------------------CCCEEEEe
Confidence 1 1112334789999999999999876 5443 334444443 57999999
Q ss_pred eeccCc--HHHHHHhh
Q 020452 263 ATIALS--ADFRKKLK 276 (326)
Q Consensus 263 ATl~~~--~~~~~~l~ 276 (326)
||++.. .++.+++.
T Consensus 182 AT~~~~~~~~i~~~l~ 197 (523)
T 1oyw_A 182 ATADDTTRQDIVRLLG 197 (523)
T ss_dssp SCCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 999865 56777775
No 40
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.94 E-value=3.1e-26 Score=223.67 Aligned_cols=183 Identities=17% Similarity=0.213 Sum_probs=136.4
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
++...|+|+|.++++.++ +|+|+++++|||+|||++|++|+++.+... ....+.++||++|
T Consensus 3 ~~~~~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~------------------~~~~~~~~lil~P 63 (556)
T 4a2p_A 3 METKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFLAT 63 (556)
T ss_dssp -----CCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEECS
T ss_pred CCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHHhC------------------cccCCCeEEEEeC
Confidence 344589999999999995 799999999999999999999999887432 1122568999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhH
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~ 211 (326)
|++|+.|+++.++.++...++++..++|+.........+..+++|+|+||++|.+++..+. ...+.++++||+||||+
T Consensus 64 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~ 141 (556)
T 4a2p_A 64 KVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHN 141 (556)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS--CCCSTTCSEEEEETGGG
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc--ccccccCCEEEEECCcc
Confidence 9999999999999999888999999999987766666666679999999999999997653 12688899999999999
Q ss_pred hhhCCCHHHHH-HHH-HhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc--CcHHHHHHhh
Q 020452 212 MIENGHFRELQ-SII-DMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA--LSADFRKKLK 276 (326)
Q Consensus 212 l~~~~~~~~i~-~il-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~--~~~~~~~~l~ 276 (326)
+.+++.+..+. ..+ ..+.. ..+..|++++|||++ +..++.+|+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~l~lSAT~~~~~~~~~~~~~~ 189 (556)
T 4a2p_A 142 TTGNHPYNVLMTRYLEQKFNS---------------------ASQLPQILGLTASVGVGNAKNIEETIE 189 (556)
T ss_dssp CSTTSHHHHHHHHHHHHHHCC------------------------CCEEEEEESCCCCTTCSSHHHHHH
T ss_pred cCCcchHHHHHHHHHHhhhcc---------------------cCCCCeEEEEeCCcccCchhhHHHHHH
Confidence 98776544442 222 22210 014589999999995 4445555543
No 41
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.6e-26 Score=236.51 Aligned_cols=165 Identities=22% Similarity=0.293 Sum_probs=144.2
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 49 IYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 49 l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
...++| .|+++|.++++.+ .+|+++++++|||+|||++|.++++..+. .+.++||
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l-~~g~~vLV~apTGSGKTlva~lai~~~l~-----------------------~g~rvL~ 134 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCI-DRGESVLVSAHTSAGKTVVAEYAIAQSLK-----------------------NKQRVIY 134 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHH-HHTCEEEEECCTTSCHHHHHHHHHHHHHH-----------------------TTCEEEE
T ss_pred HHhCCC-CCCHHHHHHHHHH-HcCCCEEEECCCCCChHHHHHHHHHHHhc-----------------------cCCeEEE
Confidence 445688 5999999999998 58999999999999999999999887662 1458999
Q ss_pred EeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecc
Q 020452 129 ITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDE 208 (326)
++|+++|+.|+++.+..++. +++.++|+.... .+++|+|+||++|..++.++. ..+.++++|||||
T Consensus 135 l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~---~~l~~l~lVViDE 200 (1010)
T 2xgj_A 135 TSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDE 200 (1010)
T ss_dssp EESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTC---TTGGGEEEEEEET
T ss_pred ECChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCc---chhhcCCEEEEec
Confidence 99999999999999999865 677888887642 357999999999999887543 5678999999999
Q ss_pred hhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhh
Q 020452 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276 (326)
Q Consensus 209 ah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 276 (326)
+|++.+++++..++.++..++ ...|+|++|||++|..+|.+|+.
T Consensus 201 aH~l~d~~rg~~~e~il~~l~------------------------~~~~il~LSATi~n~~e~a~~l~ 244 (1010)
T 2xgj_A 201 VHYMRDKERGVVWEETIILLP------------------------DKVRYVFLSATIPNAMEFAEWIC 244 (1010)
T ss_dssp GGGGGCTTTHHHHHHHHHHSC------------------------TTCEEEEEECCCTTHHHHHHHHH
T ss_pred hhhhcccchhHHHHHHHHhcC------------------------CCCeEEEEcCCCCCHHHHHHHHH
Confidence 999999999999999999998 67999999999999999999986
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.93 E-value=4.8e-26 Score=235.50 Aligned_cols=166 Identities=21% Similarity=0.294 Sum_probs=143.0
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
.++| .|+++|.++|+.++ +|+++++++|||+|||++|++++...+. .+.++||++
T Consensus 35 ~~~f-~l~~~Q~~aI~~il-~g~~vlv~apTGsGKTlv~~~~i~~~~~-----------------------~g~~vlvl~ 89 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLE-QGDSVFVAAHTSAGKTVVAEYAIAMAHR-----------------------NMTKTIYTS 89 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHH-TTCEEEEECCTTSCSHHHHHHHHHHHHH-----------------------TTCEEEEEE
T ss_pred hCCC-CCCHHHHHHHHHHH-cCCCEEEEECCCCcHHHHHHHHHHHHHh-----------------------cCCeEEEEe
Confidence 4677 68999999999985 8999999999999999999998877541 145899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchh
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah 210 (326)
|+++|+.|+++.+..++. ++++..++|+... ...++|+|+||++|..++.... ..+.++++|||||||
T Consensus 90 PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~---~~l~~l~lvViDEaH 157 (997)
T 4a4z_A 90 PIKALSNQKFRDFKETFD--DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEVH 157 (997)
T ss_dssp SCGGGHHHHHHHHHTTC----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTC---SGGGGEEEEEECCTT
T ss_pred CCHHHHHHHHHHHHHHcC--CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCc---hhhcCCCEEEEECcc
Confidence 999999999999988754 6788889998753 2357999999999999886543 457889999999999
Q ss_pred HhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 211 ~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
++.+++++..+..++..++ ...|+|++|||+++..+|.+|+..
T Consensus 158 ~l~d~~~g~~~e~ii~~l~------------------------~~v~iIlLSAT~~n~~ef~~~l~~ 200 (997)
T 4a4z_A 158 YVNDQDRGVVWEEVIIMLP------------------------QHVKFILLSATVPNTYEFANWIGR 200 (997)
T ss_dssp CCCTTCTTCCHHHHHHHSC------------------------TTCEEEEEECCCTTHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHhcc------------------------cCCCEEEEcCCCCChHHHHHHHhc
Confidence 9999999989999999998 779999999999999999999863
No 43
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.93 E-value=1.9e-25 Score=224.35 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=137.0
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 020452 46 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 125 (326)
Q Consensus 46 ~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
..+++.+||..|+++|.++++.++ +|+|+++++|||+|||++|++|+++.+.... ...+.+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l-~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~------------------~~~~~~ 63 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFP------------------QGQKGK 63 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSC------------------TTCCCC
T ss_pred CCcccccCCCCccHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHHHHhCc------------------cCCCCe
Confidence 456788999999999999999985 8999999999999999999999998774321 122358
Q ss_pred EEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEe
Q 020452 126 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205 (326)
Q Consensus 126 ~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lV 205 (326)
+||++||++|+.|+.+.+++++...++++..++|+.........+..+++|+|+||++|.+.+..+. ...+.++++||
T Consensus 64 ~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~--~~~l~~~~~vV 141 (696)
T 2ykg_A 64 VVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT--IPSLSIFTLMI 141 (696)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS--SCCGGGCSEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc--ccccccccEEE
Confidence 9999999999999999999999888899999999886555555555679999999999999997653 12578899999
Q ss_pred ecchhHhhhCCCHHHHH-HHHHh-CCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 206 LDEADRMIENGHFRELQ-SIIDM-LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 206 iDEah~l~~~~~~~~i~-~il~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
|||||++.+...+..+. ..+.. +.. ......|++++|||+.
T Consensus 142 iDEaH~~~~~~~~~~i~~~~l~~~~~~--------------------~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 142 FDECHNTSKQHPYNMIMFNYLDQKLGG--------------------SSGPLPQVIGLTASVG 184 (696)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHHHTT--------------------CCSCCCEEEEEESCCC
T ss_pred EeCCCcccCcccHHHHHHHHHHHhhcc--------------------cCCCCCeEEEEeCccc
Confidence 99999988554333222 12221 110 0014689999999997
No 44
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.93 E-value=2.5e-25 Score=191.15 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=109.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.+...|+++|.++++.++ +++++++.+|||+|||++|+++++..+...... ..+.++||++|
T Consensus 29 ~~~~~l~~~Q~~~i~~~~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-----------------~~~~~~lil~p 90 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPAL-EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-----------------SEPGKVIVLVN 90 (216)
T ss_dssp SCCCCCCHHHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-----------------TCCCCEEEEES
T ss_pred cCCCCchHHHHHHHHHHh-cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-----------------cCCCcEEEEEC
Confidence 344589999999999985 789999999999999999999998877544211 23458999999
Q ss_pred cHHHHHH-HHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCc---ccccCCCeeEEeec
Q 020452 132 TRELALQ-VTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK---HLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q-~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~---~~~~l~~l~~lViD 207 (326)
+++|+.| +.+.+..+... ++++..++|+............+++|+|+||+++...+..... ....+.++++||+|
T Consensus 91 ~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiD 169 (216)
T 3b6e_A 91 KVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIID 169 (216)
T ss_dssp SHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEET
T ss_pred HHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEE
Confidence 9999999 77888887764 6788888887654433333444689999999999998875421 11446789999999
Q ss_pred chhHhhhCCCHHHHH
Q 020452 208 EADRMIENGHFRELQ 222 (326)
Q Consensus 208 Eah~l~~~~~~~~i~ 222 (326)
|||++.+.+++..+.
T Consensus 170 Eah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 170 ECHHTNKEAVYNNIM 184 (216)
T ss_dssp TC-------CHHHHH
T ss_pred CchhhccCCcHHHHH
Confidence 999998777766653
No 45
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.92 E-value=4.4e-25 Score=215.13 Aligned_cols=171 Identities=18% Similarity=0.223 Sum_probs=135.9
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+|+|.++++.++ +|+++++++|||+|||++|++|+++.+... ....+.++||++||++|
T Consensus 4 ~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~------------------~~~~~~~~lil~P~~~L 64 (555)
T 3tbk_A 4 KPRNYQLELALPAK-KGKNTIICAPTGCGKTFVSLLICEHHLKKF------------------PCGQKGKVVFFANQIPV 64 (555)
T ss_dssp CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEECSSHHH
T ss_pred CCcHHHHHHHHHHh-CCCCEEEEeCCCChHHHHHHHHHHHHHHhc------------------ccCCCCEEEEEeCCHHH
Confidence 79999999999995 899999999999999999999999887432 11235689999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
+.|+++.++.++...++++..++|+.........+..+++|+|+||+++.+++..+. ...+.++++||+||||++.+.
T Consensus 65 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~ 142 (555)
T 3tbk_A 65 YEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA--IPSLSVFTLMIFDECHNTSKN 142 (555)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS--SCCGGGCSEEEETTGGGCSTT
T ss_pred HHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc--ccccccCCEEEEECccccCCc
Confidence 999999999999988999999999987665555556679999999999999997653 125788999999999999876
Q ss_pred CCHHHH-HHHHHh-CCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 216 GHFREL-QSIIDM-LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 216 ~~~~~i-~~il~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
+.+..+ ...+.. +.. ......|++++|||++.
T Consensus 143 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 143 HPYNQIMFRYLDHKLGE--------------------SRDPLPQVVGLTASVGV 176 (555)
T ss_dssp CHHHHHHHHHHHHHTSS--------------------CCSCCCEEEEEESCCCC
T ss_pred chHHHHHHHHHHhhhcc--------------------ccCCCCeEEEEecCccc
Confidence 533332 233222 110 00145799999999964
No 46
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.92 E-value=7.2e-25 Score=223.32 Aligned_cols=175 Identities=18% Similarity=0.199 Sum_probs=132.8
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 50 YRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 50 ~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
.-+|+..|+|+|.++++.++ +|+|+++++|||+|||++|++|++..+... ....+.++||+
T Consensus 242 ~~~g~~~l~~~Q~~~i~~~l-~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~------------------~~~~~~~~Lvl 302 (797)
T 4a2q_A 242 PVYETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFL 302 (797)
T ss_dssp ------CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEE
T ss_pred hhcCCCCCCHHHHHHHHHHH-hCCCEEEEeCCCChHHHHHHHHHHHHHHhc------------------cccCCCeEEEE
Confidence 34688899999999999995 899999999999999999999999887432 11225689999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecch
Q 020452 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEa 209 (326)
+|+++|+.|+++.++.++...++++..++|+.........+..+++|+|+||++|.+.+..+. ...+.++++||+|||
T Consensus 303 ~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEa 380 (797)
T 4a2q_A 303 ATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDEC 380 (797)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEETTG
T ss_pred eCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhcc--ccccccCCEEEEECc
Confidence 999999999999999999888999999999987776666677789999999999999997643 125788999999999
Q ss_pred hHhhhCCCHHHHH-HHHHh-CCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 210 DRMIENGHFRELQ-SIIDM-LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 210 h~l~~~~~~~~i~-~il~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
|++.+.+.+..+. ..+.. +.. .....|++++|||++
T Consensus 381 H~~~~~~~~~~i~~~~~~~~~~~---------------------~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 381 HNTTGNHPYNVLMTRYLEQKFNS---------------------ASQLPQILGLTASVG 418 (797)
T ss_dssp GGCSTTSHHHHHHHHHHHHHHTT---------------------CCCCCEEEEEESCCC
T ss_pred cccCCCccHHHHHHHHHHHhhcc---------------------CCCCCeEEEEcCCcc
Confidence 9998765444332 22221 110 015689999999995
No 47
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.92 E-value=1.5e-24 Score=226.22 Aligned_cols=174 Identities=20% Similarity=0.193 Sum_probs=138.5
Q ss_pred HHHHH-HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCe
Q 020452 46 MKSIY-RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 124 (326)
Q Consensus 46 ~~~l~-~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
.+.++ .+|| .|+|+|.++++.++ +|+|++++||||||||++|+++++..+ ..++
T Consensus 68 ~~~~~~~~gf-~pt~iQ~~ai~~il-~g~dvlv~ApTGSGKTl~~l~~il~~~-----------------------~~~~ 122 (1104)
T 4ddu_A 68 RSFFKKKFGK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLA-----------------------RKGK 122 (1104)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHT-TTCCEEECCSTTCCHHHHHHHHHHHHH-----------------------TTTC
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHH-cCCCEEEEeCCCCcHHHHHHHHHHHHH-----------------------hcCC
Confidence 33443 4788 79999999999995 899999999999999998888877765 2256
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCH---HHHHHHHhcC-CCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST---EKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 125 ~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~---~~~~~~~~~~-~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
++||++||++|+.|+++.++.+. ..++++..++|+... ..+...+..+ ++|+|+||++|.+++.. ..+.+
T Consensus 123 ~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~ 196 (1104)
T 4ddu_A 123 KSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKR 196 (1104)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSC
T ss_pred eEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccC
Confidence 89999999999999999999976 678999999999987 5555666655 99999999999888752 56788
Q ss_pred eeEEeecchhHh----------hh-CCCHHH-HHHHHHhCCCC--CCCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 201 LSFFVLDEADRM----------IE-NGHFRE-LQSIIDMLPMT--NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 201 l~~lViDEah~l----------~~-~~~~~~-i~~il~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
+++||+||||++ ++ ++|... +..++..++.. .... ..+...|+++||||+
T Consensus 197 l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~---------------~~~~~~q~ll~SAT~ 260 (1104)
T 4ddu_A 197 FDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERP---------------KNLKPGILVVSSATA 260 (1104)
T ss_dssp CSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCC---------------SSCCCCEEEEECBSS
T ss_pred cCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhh---------------ccCCCceEEEEcCCC
Confidence 999999999654 45 788777 88888876510 0000 001458999999994
No 48
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.92 E-value=6.3e-25 Score=228.77 Aligned_cols=171 Identities=19% Similarity=0.251 Sum_probs=137.9
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 50 YRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 50 ~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
+.+||. | ++|.++|+.++ +|+|++++||||||||+ |.+|++..+.. .++++||+
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il-~g~dvlv~apTGSGKTl-~~lp~l~~~~~----------------------~~~~~lil 105 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRIL-RKESFAATAPTGVGKTS-FGLAMSLFLAL----------------------KGKRCYVI 105 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHH-TTCCEECCCCBTSCSHH-HHHHHHHHHHT----------------------TSCCEEEE
T ss_pred HhcCCC-H-HHHHHHHHHHH-hCCCEEEEcCCCCCHHH-HHHHHHHHHhh----------------------cCCeEEEE
Confidence 348998 9 99999999996 89999999999999998 88888877632 25689999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCc----EEEEEEcCCCHHHH---HHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCee
Q 020452 130 TPTRELALQVTDHLKEVAKGINV----RVVPIVGGMSTEKQ---ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~----~v~~~~g~~~~~~~---~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~ 202 (326)
+||++|+.|+++.++.++...++ ++..++|+.....+ ...+.. ++|+|+||++|.+++.+ +.+++
T Consensus 106 ~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-------L~~l~ 177 (1054)
T 1gku_B 106 FPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-------LGHFD 177 (1054)
T ss_dssp ESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-------SCCCS
T ss_pred eccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-------hccCC
Confidence 99999999999999999998888 89999999887664 333344 99999999999987743 66899
Q ss_pred EEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 203 ~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
+||+||||+|++ ++..+..++..+........ .......|++++|||++...
T Consensus 178 ~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~-------------~~~~~~~q~~l~SAT~t~~~ 229 (1054)
T 1gku_B 178 FIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKT-------------KSWVGEARGCLMVSTATAKK 229 (1054)
T ss_dssp EEEESCHHHHHT--STHHHHHHHHHTTEEEETTT-------------TEEEECCSSEEEECCCCSCC
T ss_pred EEEEeChhhhhh--ccccHHHHHHHhCcchhhhh-------------hhcccCCceEEEEecCCCch
Confidence 999999999998 56788888887751100000 00114578999999998764
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.91 E-value=1.4e-24 Score=215.94 Aligned_cols=150 Identities=21% Similarity=0.304 Sum_probs=126.1
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
.+|| .|+++|..++|.++ .|+ ++.++||+|||++|.+|++...+ .+..++||+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll-~G~--Iaea~TGeGKTlaf~LP~~l~aL-----------------------~g~~vlVlt 131 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALH-DGN--IAEMKTGEGKTLTSTLPVYLNAL-----------------------TGKGVHVVT 131 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHH-TTS--EEECCTTSCHHHHHHHHHHHHHT-----------------------TSSCEEEEE
T ss_pred HcCC-CCcHHHHHhhHHHh-CCC--EEEccCCcHHHHHHHHHHHHHHH-----------------------cCCCEEEEe
Confidence 5899 99999999999985 787 99999999999999999985431 144799999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEee
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVL 206 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lVi 206 (326)
||++||.|+++++..+...+|+++++++||.+...+.. ..++||+||||++| .+++...- .....+..+.++|+
T Consensus 132 ptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 132 VNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEE
Confidence 99999999999999999999999999999988754433 34699999999999 67765431 12355788999999
Q ss_pred cchhHhh-hCC---------------CHHHHHHHHHhCC
Q 020452 207 DEADRMI-ENG---------------HFRELQSIIDMLP 229 (326)
Q Consensus 207 DEah~l~-~~~---------------~~~~i~~il~~l~ 229 (326)
||||.|+ +.+ |+..+..++..++
T Consensus 210 DEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~ 248 (844)
T 1tf5_A 210 DEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLK 248 (844)
T ss_dssp ETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCC
T ss_pred CchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCc
Confidence 9999998 664 6788999998886
No 50
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.91 E-value=5.1e-24 Score=219.97 Aligned_cols=181 Identities=18% Similarity=0.175 Sum_probs=130.8
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCe
Q 020452 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 124 (326)
Q Consensus 45 i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
+.....-.|+..|+++|.++++.++ +|+++++++|||+|||++|++|++..+... ....+.
T Consensus 237 ~~~~~~l~~~~~~r~~Q~~ai~~il-~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~------------------~~~~~~ 297 (936)
T 4a2w_A 237 IGKPPPVYETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKA 297 (936)
T ss_dssp -----------CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHTTTTTC------------------CSSCCC
T ss_pred hcCcccccCCCCCCHHHHHHHHHHH-cCCCEEEEeCCCchHHHHHHHHHHHHHHhc------------------cccCCC
Confidence 3333344578899999999999995 899999999999999999999998876321 112256
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEE
Q 020452 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204 (326)
Q Consensus 125 ~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~l 204 (326)
++||++||++|+.|+++.++.++...++++..++|+.....+...+..+++|+|+||++|.+.+..+. ...+.++++|
T Consensus 298 ~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~--~~~l~~~~li 375 (936)
T 4a2w_A 298 KVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLM 375 (936)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS--CCCGGGCSEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCc--cccccCCCEE
Confidence 89999999999999999999999988999999999987666555566678999999999999997643 2257789999
Q ss_pred eecchhHhhhCCCHHHHH-HHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 205 VLDEADRMIENGHFRELQ-SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 205 ViDEah~l~~~~~~~~i~-~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
|+||||++...+.+..+. .++..... ......|++++|||+.
T Consensus 376 ViDEaH~~~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 376 IFDECHNTTGNHPYNVLMTRYLEQKFN--------------------SASQLPQILGLTASVG 418 (936)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHHHT--------------------TCSCCCEEEEEESCCC
T ss_pred EEECccccCCCccHHHHHHHHHHHhhc--------------------cCCCcCeEEEecCCcc
Confidence 999999998665333332 22221100 0115689999999995
No 51
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=183.98 Aligned_cols=182 Identities=17% Similarity=0.175 Sum_probs=131.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
.++.+.+.+...+...++++|.++++.+ .+|++++++||||||||.++.++++....... .
T Consensus 46 ~~~~~~~~~~~~~~~p~~~~q~~~i~~i-~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~------------------~ 106 (235)
T 3llm_A 46 QDHDLQAILQERELLPVKKFESEILEAI-SQNSVVIIRGATGCGKTTQVPQFILDDFIQND------------------R 106 (235)
T ss_dssp HCHHHHHHHHHHHTSGGGGGHHHHHHHH-HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT------------------C
T ss_pred cCHHHHHHHHHHhcCChHHHHHHHHHHH-hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC------------------C
Confidence 4444444444444446799999999998 58999999999999999999888887664321 1
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHc-CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
..+.++++++|+++|+.|+++.+..... ..+..++........ ....+++|+|+||+++.+++.. .++
T Consensus 107 ~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~------~l~ 175 (235)
T 3llm_A 107 AAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA------GIR 175 (235)
T ss_dssp GGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH------CCT
T ss_pred CCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh------hhc
Confidence 2245899999999999999888876543 233444332221110 0013578999999999999864 378
Q ss_pred CeeEEeecchhHh-hhCCCH-HHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 200 TLSFFVLDEADRM-IENGHF-RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 200 ~l~~lViDEah~l-~~~~~~-~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
++++||+||||.+ ++.++. ..+..++... ++.|+++||||+++.. +.+|+..
T Consensus 176 ~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-------------------------~~~~~il~SAT~~~~~-~~~~~~~ 229 (235)
T 3llm_A 176 GISHVIVDEIHERDINTDFLLVVLRDVVQAY-------------------------PEVRIVLMSATIDTSM-FCEYFFN 229 (235)
T ss_dssp TCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-------------------------TTSEEEEEECSSCCHH-HHHHTTS
T ss_pred CCcEEEEECCccCCcchHHHHHHHHHHHhhC-------------------------CCCeEEEEecCCCHHH-HHHHcCC
Confidence 8999999999986 666665 4556666554 3589999999998665 8888764
Q ss_pred c
Q 020452 278 G 278 (326)
Q Consensus 278 ~ 278 (326)
.
T Consensus 230 ~ 230 (235)
T 3llm_A 230 C 230 (235)
T ss_dssp C
T ss_pred C
Confidence 3
No 52
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.89 E-value=2.9e-23 Score=206.19 Aligned_cols=149 Identities=18% Similarity=0.230 Sum_probs=113.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|..++|.++ .|+ ++.++||+|||++|++|++...+ .+.+++|++|
T Consensus 71 lg~-~p~~VQ~~~i~~ll-~G~--Iaem~TGsGKTlaf~LP~l~~~l-----------------------~g~~vlVltP 123 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLN-ERC--IAEMRTGEGKTLTATLPAYLNAL-----------------------TGKGVHVVTV 123 (853)
T ss_dssp HSC-CCCHHHHHHHHHHH-SSE--EEECCTTSCHHHHHHHHHHHHHT-----------------------TSSCCEEEES
T ss_pred cCC-CCChHHHhhccccc-CCe--eeeecCCchHHHHHHHHHHHHHH-----------------------cCCcEEEEcC
Confidence 676 89999999999985 777 99999999999999999986542 1447999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lViD 207 (326)
|++||.|+++.+..++..+++++++++||.+... +....+++|+||||++| .++++.+. .....++++.++|+|
T Consensus 124 TreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlD 201 (853)
T 2fsf_A 124 NDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVD 201 (853)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEES
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEEC
Confidence 9999999999999999999999999999988643 33344699999999999 78886542 123557899999999
Q ss_pred chhHhh-hC---------------CCHHHHHHHHHhCC
Q 020452 208 EADRMI-EN---------------GHFRELQSIIDMLP 229 (326)
Q Consensus 208 Eah~l~-~~---------------~~~~~i~~il~~l~ 229 (326)
|||.|+ +. +++..+..++..++
T Consensus 202 EaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~ 239 (853)
T 2fsf_A 202 EVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLI 239 (853)
T ss_dssp CHHHHTTTTTTCEEEEEEC-------------------
T ss_pred chHHHHHhcCcccccccCCCccchhHHHHHHHHHHhch
Confidence 999999 54 35778888888886
No 53
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.89 E-value=1.6e-23 Score=188.04 Aligned_cols=154 Identities=22% Similarity=0.185 Sum_probs=120.8
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+++|.++++.++ .+++.++++|||+|||.++++++...+.. +..++||++|+++|
T Consensus 113 ~l~~~Q~~ai~~~l-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------------------~~~~~lil~Pt~~L 169 (282)
T 1rif_A 113 EPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN----------------------YEGKILIIVPTTAL 169 (282)
T ss_dssp CCCHHHHHHHHHHH-HHSEEEECCCTTSCHHHHHHHHHHHHHHH----------------------CSSEEEEECSSHHH
T ss_pred CccHHHHHHHHHHH-hcCCeEEEcCCCCCcHHHHHHHHHHHHHc----------------------CCCeEEEEECCHHH
Confidence 89999999999986 56788899999999999998877765421 12389999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
+.|+.+.++++....+..+..+.|+..... ....+.+|+|+||+.+.... ...+.+++++|+||||++.+
T Consensus 170 ~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~------~~~~~~~~~vIiDEaH~~~~- 239 (282)
T 1rif_A 170 TTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP------KEWFSQFGMMMNDECHLATG- 239 (282)
T ss_dssp HHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC------GGGGGGEEEEEEETGGGCCH-
T ss_pred HHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH------HHHHhhCCEEEEECCccCCc-
Confidence 999999999987666677777877765422 11246899999999874321 13467899999999999874
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 216 ~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
..+..++..+. ...+++++|||+++..
T Consensus 240 ---~~~~~il~~~~------------------------~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 240 ---KSISSIISGLN------------------------NCMFKFGLSGSLRDGK 266 (282)
T ss_dssp ---HHHHHHTTTCT------------------------TCCEEEEECSSCCTTS
T ss_pred ---ccHHHHHHHhh------------------------cCCeEEEEeCCCCCcc
Confidence 36677777765 5689999999998664
No 54
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.89 E-value=4.4e-22 Score=189.88 Aligned_cols=161 Identities=22% Similarity=0.300 Sum_probs=130.9
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+|+|.++++.++ .+ ++++.+|||+|||++++++++..+. . .+.++||++|+++|
T Consensus 9 ~l~~~Q~~~i~~~~-~~-~~ll~~~tG~GKT~~~~~~~~~~~~-~---------------------~~~~~liv~P~~~L 64 (494)
T 1wp9_A 9 QPRIYQEVIYAKCK-ET-NCLIVLPTGLGKTLIAMMIAEYRLT-K---------------------YGGKVLMLAPTKPL 64 (494)
T ss_dssp CCCHHHHHHHHHGG-GS-CEEEECCTTSCHHHHHHHHHHHHHH-H---------------------SCSCEEEECSSHHH
T ss_pred CccHHHHHHHHHHh-hC-CEEEEcCCCCCHHHHHHHHHHHHHh-c---------------------CCCeEEEEECCHHH
Confidence 79999999999985 56 9999999999999999999988764 1 14489999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
+.|+.+.+.+++...+.++..++|+.........+ .+++|+|+||+.+...+..+. ..+.++++||+||||++.+.
T Consensus 65 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~---~~~~~~~~vIiDEaH~~~~~ 140 (494)
T 1wp9_A 65 VLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGR---ISLEDVSLIVFDEAHRAVGN 140 (494)
T ss_dssp HHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTS---CCTTSCSEEEEETGGGCSTT
T ss_pred HHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCC---cchhhceEEEEECCcccCCC
Confidence 99999999998754455888999998876554433 358999999999999887543 56788999999999999866
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 216 ~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
..+..+...+.... ...+++++|||+.+.
T Consensus 141 ~~~~~~~~~~~~~~------------------------~~~~~l~lTaTp~~~ 169 (494)
T 1wp9_A 141 YAYVFIAREYKRQA------------------------KNPLVIGLTASPGST 169 (494)
T ss_dssp CHHHHHHHHHHHHC------------------------SSCCEEEEESCSCSS
T ss_pred CcHHHHHHHHHhcC------------------------CCCeEEEEecCCCCC
Confidence 55555555555444 568999999999854
No 55
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.88 E-value=4e-23 Score=207.48 Aligned_cols=143 Identities=19% Similarity=0.200 Sum_probs=112.9
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+++|.++++.++ +|+++++.+|||+|||++|++|++..+...... ..+.++||++|+++|
T Consensus 7 ~l~~~Q~~~i~~il-~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----------------~~~~~vlvl~P~~~L 68 (699)
T 4gl2_A 7 QLRPYQMEVAQPAL-EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----------------SEPGKVIVLVNKVLL 68 (699)
T ss_dssp CCCHHHHHHHHHHH-SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----------------TCCCCBCCEESCSHH
T ss_pred CccHHHHHHHHHHH-hCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----------------CCCCeEEEEECCHHH
Confidence 79999999999996 799999999999999999999999988765321 223589999999999
Q ss_pred HHHH-HHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC---cccccCCCeeEEeecchhH
Q 020452 136 ALQV-TDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE---KHLVELHTLSFFVLDEADR 211 (326)
Q Consensus 136 ~~Q~-~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~---~~~~~l~~l~~lViDEah~ 211 (326)
+.|+ .+.++.++.. ++++..++|+.........+..+++|+|+||++|.+.+.+.. .....+.++++|||||||+
T Consensus 69 ~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~ 147 (699)
T 4gl2_A 69 VEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH 147 (699)
T ss_dssp HHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGG
T ss_pred HHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccc
Confidence 9999 9999999875 488999999876655555556789999999999998884321 2235678899999999999
Q ss_pred hhhCCC
Q 020452 212 MIENGH 217 (326)
Q Consensus 212 l~~~~~ 217 (326)
+....+
T Consensus 148 ~~~~~~ 153 (699)
T 4gl2_A 148 TNKEAV 153 (699)
T ss_dssp CBTTBS
T ss_pred cCccch
Confidence 875443
No 56
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.88 E-value=2.3e-22 Score=200.07 Aligned_cols=150 Identities=19% Similarity=0.305 Sum_probs=126.1
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
.+|+ .|+++|..++|.++ .|+ |+.++||+|||++|.+|++...+. +.+++|++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll-~G~--Iaem~TGeGKTLa~~LP~~l~aL~-----------------------g~~v~VvT 159 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALH-LGN--VAEMKTGEGKTLTCVLPAYLNALA-----------------------GNGVHIVT 159 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHH-TTE--EEECCTTSCHHHHTHHHHHHHHTT-----------------------TSCEEEEE
T ss_pred HcCC-CCCHHHHHHHHhHh-cCC--EEEecCCCccHHHHHHHHHHHHHh-----------------------CCCeEEEe
Confidence 4899 99999999999985 777 999999999999999999765421 33799999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEee
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVL 206 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lVi 206 (326)
||++||.|.++++..+...+|+++++++|+.+..... ...++||+||||++| .+++..+. .....+..+.++|+
T Consensus 160 pTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 160 VNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEE
Confidence 9999999999999999999999999999998864433 333689999999999 78886542 12356788999999
Q ss_pred cchhHhh-hC---------------CCHHHHHHHHHhCC
Q 020452 207 DEADRMI-EN---------------GHFRELQSIIDMLP 229 (326)
Q Consensus 207 DEah~l~-~~---------------~~~~~i~~il~~l~ 229 (326)
||||.|+ +. +|+..+..++..++
T Consensus 238 DEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~ 276 (922)
T 1nkt_A 238 DEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLME 276 (922)
T ss_dssp TTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSC
T ss_pred eChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCc
Confidence 9999998 42 57889999999987
No 57
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.87 E-value=5e-22 Score=200.03 Aligned_cols=139 Identities=24% Similarity=0.352 Sum_probs=115.1
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhc---C--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 020452 43 PLLMKSIYRLGFKEPTPIQKACIPAAAHQ---G--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK 117 (326)
Q Consensus 43 ~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~---g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~ 117 (326)
+.+.+.++.+|| .|+++|.++++.++.. + +++++++|||||||++|++|++..+..
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------------ 416 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------------ 416 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------------------
Confidence 445555678999 9999999999998532 1 599999999999999999999987632
Q ss_pred cCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH---Hhc-CCCEEEeCcHHHHHHHhcCCc
Q 020452 118 YAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LKA-RPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 118 ~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~-~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
+.+++|++||++|+.|+++.+.+++...++++..++|+......... +.. .++|+|+||+.+.+.
T Consensus 417 -----g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~------ 485 (780)
T 1gm5_A 417 -----GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED------ 485 (780)
T ss_dssp -----TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC------
T ss_pred -----CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh------
Confidence 34899999999999999999999998889999999999987654332 333 589999999887431
Q ss_pred ccccCCCeeEEeecchhHhh
Q 020452 194 HLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 194 ~~~~l~~l~~lViDEah~l~ 213 (326)
..+.+++++|+||+|++.
T Consensus 486 --~~~~~l~lVVIDEaHr~g 503 (780)
T 1gm5_A 486 --VHFKNLGLVIIDEQHRFG 503 (780)
T ss_dssp --CCCSCCCEEEEESCCCC-
T ss_pred --hhccCCceEEecccchhh
Confidence 457889999999999863
No 58
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.86 E-value=5.4e-22 Score=192.26 Aligned_cols=154 Identities=22% Similarity=0.192 Sum_probs=124.5
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..|+++|.++++.++ +++++++++|||+|||++|+.++...+.. ++.++||++|+++
T Consensus 112 ~~l~~~Q~~ai~~~~-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------------------~~~~vlvl~P~~~ 168 (510)
T 2oca_A 112 IEPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN----------------------YEGKILIIVPTTA 168 (510)
T ss_dssp ECCCHHHHHHHHHHH-HHSEEEEECCSTTTHHHHHHHHHHHHHHH----------------------CSSEEEEEESSHH
T ss_pred CCCCHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHHhC----------------------CCCeEEEEECcHH
Confidence 389999999999986 67999999999999999999888776532 1238999999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 135 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
|+.|+++.++.+....+..+..++|+.....+ .....+|+|+||+.+.. .. ...+.++++||+||+|++..
T Consensus 169 L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~---~~~~~~~~liIiDE~H~~~~ 239 (510)
T 2oca_A 169 LTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QP---KEWFSQFGMMMNDECHLATG 239 (510)
T ss_dssp HHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SC---GGGGGGEEEEEEETGGGCCH
T ss_pred HHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---ch---hhhhhcCCEEEEECCcCCCc
Confidence 99999999998866666788888888765443 34578999999997632 21 24567899999999999875
Q ss_pred CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 215 ~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
..+..++..++ ...+++++|||+++.
T Consensus 240 ----~~~~~il~~~~------------------------~~~~~l~lSATp~~~ 265 (510)
T 2oca_A 240 ----KSISSIISGLN------------------------NCMFKFGLSGSLRDG 265 (510)
T ss_dssp ----HHHHHHGGGCT------------------------TCCEEEEEESCGGGC
T ss_pred ----ccHHHHHHhcc------------------------cCcEEEEEEeCCCCC
Confidence 45667777775 567999999999755
No 59
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.85 E-value=1.6e-20 Score=196.83 Aligned_cols=167 Identities=22% Similarity=0.259 Sum_probs=130.6
Q ss_pred CCCCHHHHHHHH-HCCCCCChHHHHHHHHHHHh---cCC--cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 39 LRLHPLLMKSIY-RLGFKEPTPIQKACIPAAAH---QGK--DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 39 l~l~~~i~~~l~-~~g~~~p~~~Q~~~i~~~l~---~g~--dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
+++++.+.+.+. .+|| .|||+|.++++.++. +|+ |+++++|||+|||.+|+.+++..+.
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-------------- 650 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-------------- 650 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------------
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------------
Confidence 456666766664 4788 579999999999864 255 9999999999999999988877541
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH---Hh-cCCCEEEeCcHHHHHHH
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LK-ARPELVVGTPGRLWELM 188 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~~-~~~~IlV~Tp~~l~~ll 188 (326)
.+.+++|++||++|+.|+++.+.+.+...++++..++|.......... +. ..++|+|+||+.+.
T Consensus 651 ---------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~--- 718 (1151)
T 2eyq_A 651 ---------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ--- 718 (1151)
T ss_dssp ---------TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH---
T ss_pred ---------hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh---
Confidence 245999999999999999999999988888999999988776554332 33 35899999997652
Q ss_pred hcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.. ..++++++||+||+|++. .....++..++ ...+++++|||+.
T Consensus 719 -~~----~~~~~l~lvIiDEaH~~g-----~~~~~~l~~l~------------------------~~~~vl~lSATp~ 762 (1151)
T 2eyq_A 719 -SD----VKFKDLGLLIVDEEHRFG-----VRHKERIKAMR------------------------ANVDILTLTATPI 762 (1151)
T ss_dssp -SC----CCCSSEEEEEEESGGGSC-----HHHHHHHHHHH------------------------TTSEEEEEESSCC
T ss_pred -CC----ccccccceEEEechHhcC-----hHHHHHHHHhc------------------------CCCCEEEEcCCCC
Confidence 21 557899999999999953 23344555554 5689999999985
No 60
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.83 E-value=1.8e-20 Score=179.77 Aligned_cols=138 Identities=21% Similarity=0.138 Sum_probs=112.5
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+|+|.++++.++ .++++++++|||+|||++|+.++... +.++||++|+++|
T Consensus 93 ~l~~~Q~~ai~~i~-~~~~~ll~~~TGsGKT~~~l~~i~~~--------------------------~~~~Lvl~P~~~L 145 (472)
T 2fwr_A 93 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL--------------------------STPTLIVVPTLAL 145 (472)
T ss_dssp CBCHHHHHHHHHHT-TTTEEEEECCTTSCHHHHHHHHHHHH--------------------------CSCEEEEESSHHH
T ss_pred CcCHHHHHHHHHHH-hcCCEEEEeCCCCCHHHHHHHHHHHc--------------------------CCCEEEEECCHHH
Confidence 68999999999985 77889999999999999998887653 2379999999999
Q ss_pred HHHHHHHHHHHHcCCCcE-EEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 136 ALQVTDHLKEVAKGINVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~-v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
+.|+.+.+..+ +++ +..++|+... ..+|+|+||+.+...+.. ...++++||+||+|++.+
T Consensus 146 ~~Q~~~~~~~~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~------~~~~~~liIvDEaH~~~~ 206 (472)
T 2fwr_A 146 AEQWKERLGIF----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPA 206 (472)
T ss_dssp HHHHHHHGGGG----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH------HTTTCSEEEEETGGGTTS
T ss_pred HHHHHHHHHhC----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH------hcCCCCEEEEECCcCCCC
Confidence 99999999884 677 8888887642 579999999998776631 124589999999999988
Q ss_pred CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 215 ~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.++.. ++..++ ..+++++|||+...
T Consensus 207 ~~~~~----~~~~~~-------------------------~~~~l~lSATp~~~ 231 (472)
T 2fwr_A 207 ESYVQ----IAQMSI-------------------------APFRLGLTATFERE 231 (472)
T ss_dssp TTTHH----HHHTCC-------------------------CSEEEEEESCCCCT
T ss_pred hHHHH----HHHhcC-------------------------CCeEEEEecCccCC
Confidence 77654 444443 46899999999743
No 61
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.83 E-value=3.7e-20 Score=187.16 Aligned_cols=191 Identities=17% Similarity=0.196 Sum_probs=136.7
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020452 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 109 (326)
Q Consensus 30 ~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~ 109 (326)
+.++..|+++++++.+.+.++..+ ..|++.|+.+|+.++..+++++++||||||||. ++|++. .....
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll--~~~~~------- 135 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFV--LFDEM------- 135 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHH--HHHHC-------
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHH--HHhcc-------
Confidence 456788999999999999999988 689999999999998788899999999999998 456552 11110
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc-CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH
Q 020452 110 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll 188 (326)
....+.+++|++|+++|+.|+++.+..... ..+..++....... ....+.+|+|+||+++.+.+
T Consensus 136 ---------~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l 200 (773)
T 2xau_A 136 ---------PHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREA 200 (773)
T ss_dssp ---------GGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHH
T ss_pred ---------ccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHH
Confidence 001245799999999999999987765532 12222222111100 01236789999999999877
Q ss_pred hcCCcccccCCCeeEEeecchhH-hhhCCC-HHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 189 SGGEKHLVELHTLSFFVLDEADR-MIENGH-FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~-l~~~~~-~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
... ..+.++++||+||+|. +++..+ ...+..+.... +..|++++|||+
T Consensus 201 ~~~----~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-------------------------~~~~iIl~SAT~- 250 (773)
T 2xau_A 201 MED----HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-------------------------PDLKIIIMSATL- 250 (773)
T ss_dssp HHS----TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-------------------------TTCEEEEEESCS-
T ss_pred hhC----ccccCCCEEEecCccccccchHHHHHHHHHHHHhC-------------------------CCceEEEEeccc-
Confidence 543 4588999999999995 554322 23333443332 358999999999
Q ss_pred CcHHHHHHhhc
Q 020452 267 LSADFRKKLKH 277 (326)
Q Consensus 267 ~~~~~~~~l~~ 277 (326)
+.+.+.+|+..
T Consensus 251 ~~~~l~~~~~~ 261 (773)
T 2xau_A 251 DAEKFQRYFND 261 (773)
T ss_dssp CCHHHHHHTTS
T ss_pred cHHHHHHHhcC
Confidence 47788888864
No 62
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.82 E-value=1.2e-19 Score=180.44 Aligned_cols=150 Identities=20% Similarity=0.285 Sum_probs=121.4
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|+ .|+++|..++|.++ +|+ ++.+.||+|||++|.+|++...+. +.+++|++|
T Consensus 76 lG~-~Pt~VQ~~~ip~Ll-qG~--IaeakTGeGKTLvf~Lp~~L~aL~-----------------------G~qv~VvTP 128 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLH-EGK--IAEMKTGEGKTLVATLAVALNALT-----------------------GKGVHVVTV 128 (997)
T ss_dssp TCC-CCCHHHHHHHHHHH-TTS--EEECCSTHHHHHHHHHHHHHHHTT-----------------------CSCCEEEES
T ss_pred hCC-CCcHHHHhhccccc-CCc--eeeccCCCchHHHHHHHHHHHHHh-----------------------CCCEEEEeC
Confidence 899 99999999999985 777 999999999999999999754321 347999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCC---CeeEE
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELH---TLSFF 204 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~---~l~~l 204 (326)
|++||.|.++.+..++..+|+++++++|+.+.... ....++||+||||++| ++++..+. .....++ .+.++
T Consensus 129 TreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~l 206 (997)
T 2ipc_A 129 NDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYA 206 (997)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceE
Confidence 99999999999999999999999999999885433 3334699999999999 88887652 1124567 89999
Q ss_pred eecchhHhh-hCCC---------------HHHHHHHHHhCCC
Q 020452 205 VLDEADRMI-ENGH---------------FRELQSIIDMLPM 230 (326)
Q Consensus 205 ViDEah~l~-~~~~---------------~~~i~~il~~l~~ 230 (326)
|+||+|.|+ +.++ +..+..++..|+.
T Consensus 207 IIDEaDsmLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~ 248 (997)
T 2ipc_A 207 IIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLER 248 (997)
T ss_dssp EETTHHHHTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCC
T ss_pred EEechHHHHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhh
Confidence 999999998 3322 3455666777653
No 63
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.82 E-value=5.8e-20 Score=160.75 Aligned_cols=139 Identities=21% Similarity=0.134 Sum_probs=108.1
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+++|.+++..++ .++++++++|||+|||.+++.++... +.+++|++|+++|
T Consensus 93 ~l~~~Q~~ai~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~--------------------------~~~~liv~P~~~L 145 (237)
T 2fz4_A 93 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL--------------------------STPTLIVVPTLAL 145 (237)
T ss_dssp CCCHHHHHHHHHHT-TTSEEEEEESSSTTHHHHHHHHHHHS--------------------------CSCEEEEESSHHH
T ss_pred CcCHHHHHHHHHHH-hCCCEEEEeCCCCCHHHHHHHHHHHc--------------------------CCCEEEEeCCHHH
Confidence 78999999999985 67889999999999999988776542 2379999999999
Q ss_pred HHHHHHHHHHHHcCCCcE-EEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 136 ALQVTDHLKEVAKGINVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~-v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
+.|+.+.+..+ +++ +..+.|+.. ...+|+|+|++.+...... ...++++||+||+|++.+
T Consensus 146 ~~q~~~~~~~~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~------~~~~~~llIiDEaH~l~~ 206 (237)
T 2fz4_A 146 AEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPA 206 (237)
T ss_dssp HHHHHHHHGGG----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH------HTTTCSEEEEECSSCCCT
T ss_pred HHHHHHHHHhC----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH------hcccCCEEEEECCccCCC
Confidence 99999988874 677 777777654 2579999999998765531 124589999999999976
Q ss_pred CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 215 ~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
..+. .++..++ ..+++++|||....+
T Consensus 207 ~~~~----~i~~~~~-------------------------~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 207 ESYV----QIAQMSI-------------------------APFRLGLTATFERED 232 (237)
T ss_dssp TTHH----HHHHTCC-------------------------CSEEEEEEESCC---
T ss_pred hHHH----HHHHhcc-------------------------CCEEEEEecCCCCCC
Confidence 5432 3445443 468999999998553
No 64
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.81 E-value=2.8e-21 Score=184.65 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=108.5
Q ss_pred CCCCChHHHHHHHHHHHhcCCcE-EEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 53 GFKEPTPIQKACIPAAAHQGKDI-IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~l~~g~dv-lv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
|+.+|+|+|+ +||.++ +++++ ++++|||||||++|++|++..+... +.++||++|
T Consensus 1 G~~q~~~iq~-~i~~~l-~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~----------------------~~~~lvl~P 56 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIF-RKKRLTIMDLHPGAGKTKRILPSIVREALLR----------------------RLRTLILAP 56 (451)
T ss_dssp CCCCCSCCCC-CCGGGG-STTCEEEECCCTTSSCCTTHHHHHHHHHHHT----------------------TCCEEEEES
T ss_pred CCCCCCCcHH-HHHHHH-hcCCeEEEECCCCCCHhhHHHHHHHHHHHhc----------------------CCcEEEECC
Confidence 7889999985 799986 66665 9999999999999999999876432 458999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhH
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~ 211 (326)
|++|+.|+++.+. +..+....+.... ....+..|.++|++.+...+.+. ..+.++++||+||||+
T Consensus 57 tr~La~Q~~~~l~------g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~ 121 (451)
T 2jlq_A 57 TRVVAAEMEEALR------GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHF 121 (451)
T ss_dssp SHHHHHHHHHHTT------TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTC
T ss_pred CHHHHHHHHHHhc------Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCcc
Confidence 9999999998875 3333222211110 01224578899999998777543 5578999999999997
Q ss_pred hhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 212 l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
+ +..+...+..+..... .+.+|+++||||++.
T Consensus 122 ~-~~~~~~~~~~~~~~~~-----------------------~~~~~~i~~SAT~~~ 153 (451)
T 2jlq_A 122 T-DPCSVAARGYISTRVE-----------------------MGEAAAIFMTATPPG 153 (451)
T ss_dssp C-SHHHHHHHHHHHHHHH-----------------------TTSCEEEEECSSCTT
T ss_pred C-CcchHHHHHHHHHhhc-----------------------CCCceEEEEccCCCc
Confidence 7 3333333333322211 046899999999974
No 65
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.80 E-value=2.6e-21 Score=191.09 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=117.7
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 020452 39 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 118 (326)
Q Consensus 39 l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~ 118 (326)
+++++.+++++... ...++|+|+.+++.+ .+|+|+++++|||||||++|++|+++.+...
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l-~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~------------------ 214 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIF-RKKRLTIMDLHPGAGKTKRILPSIVREALKR------------------ 214 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGG-STTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------------
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHH-hcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC------------------
Confidence 66777776666554 478999998888877 5899999999999999999999999987532
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 119 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 119 ~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
++++||++||++|+.|+++.++. ..+. ..+.... .....+..+.+.|.+.+...+... ..+
T Consensus 215 ----~~~vLvl~PtreLa~Qi~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~----~~l 275 (618)
T 2whx_A 215 ----RLRTLILAPTRVVAAEMEEALRG------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS----TRV 275 (618)
T ss_dssp ----TCCEEEEESSHHHHHHHHHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC----SSC
T ss_pred ----CCeEEEEcChHHHHHHHHHHhcC------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhcc----ccc
Confidence 45899999999999999988762 2333 2221100 000112346667777776555432 457
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.++++||+||||++ +.++...+..++..++. ..+|+++||||++..
T Consensus 276 ~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~-----------------------~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 276 PNYNLIVMDEAHFT-DPCSVAARGYISTRVEM-----------------------GEAAAIFMTATPPGS 321 (618)
T ss_dssp CCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH-----------------------TSCEEEEECSSCTTC
T ss_pred cCCeEEEEECCCCC-CccHHHHHHHHHHHhcc-----------------------cCccEEEEECCCchh
Confidence 88999999999998 56677777777776641 468999999999855
No 66
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.78 E-value=2.5e-20 Score=183.51 Aligned_cols=145 Identities=14% Similarity=0.138 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 137 (326)
.++|..+++.+ .++++++++||||||||.+|.+++++. +.++||++|||+||.
T Consensus 219 ~~~q~~i~~~L-~~~~~vlv~ApTGSGKT~a~~l~ll~~--------------------------g~~vLVl~PTReLA~ 271 (666)
T 3o8b_A 219 FTDNSSPPAVP-QSFQVAHLHAPTGSGKSTKVPAAYAAQ--------------------------GYKVLVLNPSVAATL 271 (666)
T ss_dssp CCCCCSCCCCC-SSCEEEEEECCTTSCTTTHHHHHHHHT--------------------------TCCEEEEESCHHHHH
T ss_pred HHHHHHHHHHH-HcCCeEEEEeCCchhHHHHHHHHHHHC--------------------------CCeEEEEcchHHHHH
Confidence 44454444444 688899999999999999999887751 348999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCC
Q 020452 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217 (326)
Q Consensus 138 Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~ 217 (326)
|+++.+.+.. +..+...+|+.. ...+++|+|+||++| +.+. ...++++++||+|||| +++.++
T Consensus 272 Qia~~l~~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~---~l~l~~l~~lVlDEAH-~l~~~~ 334 (666)
T 3o8b_A 272 GFGAYMSKAH---GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADG---GCSGGAYDIIICDECH-STDSTT 334 (666)
T ss_dssp HHHHHHHHHH---SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTT---SCCTTSCSEEEETTTT-CCSHHH
T ss_pred HHHHHHHHHh---CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCC---CcccCcccEEEEccch-hcCccH
Confidence 9999877664 445666677654 345789999999997 3332 2667889999999996 456677
Q ss_pred HHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 218 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 218 ~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
...+..+++.++.. ....++++|||++..
T Consensus 335 ~~~l~~Il~~l~~~----------------------~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 335 ILGIGTVLDQAETA----------------------GARLVVLATATPPGS 363 (666)
T ss_dssp HHHHHHHHHHTTTT----------------------TCSEEEEEESSCTTC
T ss_pred HHHHHHHHHhhhhc----------------------CCceEEEECCCCCcc
Confidence 88889999988721 223478889999864
No 67
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.73 E-value=2.3e-18 Score=164.72 Aligned_cols=137 Identities=19% Similarity=0.247 Sum_probs=94.2
Q ss_pred HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHH
Q 020452 66 PAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 145 (326)
Q Consensus 66 ~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 145 (326)
+.++.+++++++++|||||||++|++|+++.+... ++++||++||++|+.|+++.+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~----------------------~~~~lvl~Ptr~La~Q~~~~l~- 71 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ----------------------RLRTAVLAPTRVVAAEMAEALR- 71 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT----------------------TCCEEEEECSHHHHHHHHHHTT-
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC----------------------CCcEEEECchHHHHHHHHHHhc-
Confidence 44457889999999999999999999999887532 4589999999999999999886
Q ss_pred HHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhH-----hhhCCCHHH
Q 020452 146 VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-----MIENGHFRE 220 (326)
Q Consensus 146 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~-----l~~~~~~~~ 220 (326)
+..+....+..... -..+..+.+.|.+.+...+... ..++++++||+||||+ ++..++...
T Consensus 72 -----g~~v~~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iViDEaH~~~~~~~~~~~~~~~ 137 (459)
T 2z83_A 72 -----GLPVRYQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVMDEAHFTDPASIAARGYIAT 137 (459)
T ss_dssp -----TSCEEECC-------------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEESSTTCCSHHHHHHHHHHHH
T ss_pred -----CceEeEEecccccC-----CCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEEECCccCCchhhHHHHHHHH
Confidence 23332222211110 1223457778888877665443 4578999999999998 343333222
Q ss_pred HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 221 LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 221 i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
+ . . + ...|+++||||++..
T Consensus 138 ~---~-~-~------------------------~~~~~il~SAT~~~~ 156 (459)
T 2z83_A 138 K---V-E-L------------------------GEAAAIFMTATPPGT 156 (459)
T ss_dssp H---H-H-T------------------------TSCEEEEECSSCTTC
T ss_pred H---h-c-c------------------------CCccEEEEEcCCCcc
Confidence 1 1 1 1 468999999999854
No 68
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.73 E-value=3.2e-18 Score=168.70 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAAH----QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~----~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.|+++|.++++.++. .++++++++|||+|||++++. ++..+...... ......+.++|||+|
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~-------------~~~~~~~~~vlil~P 243 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWN-------------RTGDYRKPRILFLAD 243 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCC-------------SSCSSSCCCEEEEEC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccc-------------cccccCCCeEEEEeC
Confidence 799999999998753 346799999999999999754 44444332100 001124569999999
Q ss_pred cHHHHHHHH-HHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC-cccccCCCeeEEeecch
Q 020452 132 TRELALQVT-DHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-KHLVELHTLSFFVLDEA 209 (326)
Q Consensus 132 t~~L~~Q~~-~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~-~~~~~l~~l~~lViDEa 209 (326)
+++|+.|++ +.++.+ +..+..+.++. ...+.+|+|+||++|........ ........+++||+|||
T Consensus 244 ~~~L~~Q~~~~~~~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEa 311 (590)
T 3h1t_A 244 RNVLVDDPKDKTFTPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDEC 311 (590)
T ss_dssp -----------CCTTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCC
T ss_pred CHHHHHHHHHHHHHhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECC
Confidence 999999998 666655 33444443321 23468999999999987664221 11234567899999999
Q ss_pred hHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 210 h~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
|++...+ ...+..++..++ ..++++||||....
T Consensus 312 H~~~~~~-~~~~~~il~~~~-------------------------~~~~l~lTATP~~~ 344 (590)
T 3h1t_A 312 HRGSARD-NSNWREILEYFE-------------------------PAFQIGMTATPLRE 344 (590)
T ss_dssp C----------CHHHHHHST-------------------------TSEEEEEESSCSCT
T ss_pred ccccccc-hHHHHHHHHhCC-------------------------cceEEEeccccccc
Confidence 9997542 345566777775 36899999997643
No 69
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.73 E-value=2.2e-20 Score=185.70 Aligned_cols=155 Identities=18% Similarity=0.267 Sum_probs=102.4
Q ss_pred HHHHCCCC-----CChHHHH-----HHHHHHH-----hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 48 SIYRLGFK-----EPTPIQK-----ACIPAAA-----HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 48 ~l~~~g~~-----~p~~~Q~-----~~i~~~l-----~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
++..+||. .|+++|+ ++||.++ .+++|+++++|||||||++|++|+++.+...
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~------------ 269 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK------------ 269 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------------
Confidence 55667777 8999999 9998763 2799999999999999999999999876432
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~ 192 (326)
+.++||++||++||.|+++.++.+ ++. ...+. . . .++||+++++++..+.
T Consensus 270 ----------~~~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~--l-------~-----~v~tp~~ll~~l~~~~ 319 (673)
T 2wv9_A 270 ----------RLRTAVLAPTRVVAAEMAEALRGL----PVR--YLTPA--V-------Q-----REHSGNEIVDVMCHAT 319 (673)
T ss_dssp ----------TCCEEEEESSHHHHHHHHHHTTTS----CCE--ECCC-----------------CCCCSCCCEEEEEHHH
T ss_pred ----------CCcEEEEccHHHHHHHHHHHHhcC----Cee--eeccc--c-------c-----ccCCHHHHHHHHHhhh
Confidence 458999999999999999888754 332 11110 0 0 1455554433222110
Q ss_pred -----cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 193 -----KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 193 -----~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
.....++++++||+||+|++ +..+...+..+...++. ..+|+++||||++.
T Consensus 320 l~~~l~~~~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~-----------------------~~~~vl~~SAT~~~ 375 (673)
T 2wv9_A 320 LTHRLMSPLRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEA-----------------------GEAAAIFMTATPPG 375 (673)
T ss_dssp HHHHHHSSSCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHT-----------------------TSCEEEEECSSCTT
T ss_pred hHHHHhcccccccceEEEEeCCccc-CccHHHHHHHHHHhccc-----------------------cCCcEEEEcCCCCh
Confidence 00135789999999999998 22222333333333321 45899999999974
Q ss_pred c
Q 020452 268 S 268 (326)
Q Consensus 268 ~ 268 (326)
.
T Consensus 376 ~ 376 (673)
T 2wv9_A 376 T 376 (673)
T ss_dssp C
T ss_pred h
Confidence 4
No 70
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.72 E-value=3.8e-19 Score=169.26 Aligned_cols=133 Identities=17% Similarity=0.222 Sum_probs=91.8
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 149 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~ 149 (326)
.+|+|+++++|||||||++|++|+++.+... +++++|++||++|+.|+++.++.+
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~----------------------~~~~lil~Ptr~La~Q~~~~l~~~--- 60 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARR----------------------RLRTLVLAPTRVVLSEMKEAFHGL--- 60 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------------------TCCEEEEESSHHHHHHHHHHTTTS---
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc----------------------CCeEEEEcchHHHHHHHHHHHhcC---
Confidence 5899999999999999999999999876432 458999999999999999988743
Q ss_pred CCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC-----cccccCCCeeEEeecchhHhhhCCCHHHHHHH
Q 020452 150 INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-----KHLVELHTLSFFVLDEADRMIENGHFRELQSI 224 (326)
Q Consensus 150 ~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~-----~~~~~l~~l~~lViDEah~l~~~~~~~~i~~i 224 (326)
+ +....+.. -.|+||+++.+++..+. .....+++++++|+||+|++ +.++...+..+
T Consensus 61 -~--v~~~~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~ 122 (440)
T 1yks_A 61 -D--VKFHTQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWA 122 (440)
T ss_dssp -C--EEEESSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHH
T ss_pred -C--eEEecccc--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHH
Confidence 2 22211110 03788877654443211 11134789999999999998 33333333333
Q ss_pred HHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 225 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 225 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
...++. .++|+++||||++..
T Consensus 123 ~~~~~~-----------------------~~~~~l~~SAT~~~~ 143 (440)
T 1yks_A 123 AHRARA-----------------------NESATILMTATPPGT 143 (440)
T ss_dssp HHHHHT-----------------------TSCEEEEECSSCTTC
T ss_pred HHHhcc-----------------------CCceEEEEeCCCCch
Confidence 332221 468999999999744
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.72 E-value=5.7e-18 Score=174.86 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=114.8
Q ss_pred CChHHHHHHHHHHHhc-------------CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 020452 56 EPTPIQKACIPAAAHQ-------------GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~-------------g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (326)
.|+|+|.+|++.++.. +++.+++++||||||+++ ++++..+.. ...
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~--------------------~~~ 329 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE--------------------LDF 329 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT--------------------CTT
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh--------------------cCC
Confidence 5999999999998641 468999999999999997 556544311 122
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh-cCCCEEEeCcHHHHHHHhcCCcccccCCCe
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVELHTL 201 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l 201 (326)
..++|||+|+++|+.|+.+.+..+... .+.++.+.......+. .+++|+|+||++|..++.... ....+...
T Consensus 330 ~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~-~~~~~~~~ 402 (1038)
T 2w00_A 330 IDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAES-DLPVYNQQ 402 (1038)
T ss_dssp CCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCC-CCGGGGSC
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhccc-chhccccc
Confidence 358999999999999999999887542 1234444444444453 468999999999998876432 11234567
Q ss_pred eEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 202 ~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.+||+||||++.. +.....++..++ ..++++||||....
T Consensus 403 ~lvIiDEAHrs~~---~~~~~~I~~~~p-------------------------~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 403 VVFIFDECHRSQF---GEAQKNLKKKFK-------------------------RYYQFGFTGTPIFP 441 (1038)
T ss_dssp EEEEEESCCTTHH---HHHHHHHHHHCS-------------------------SEEEEEEESSCCCS
T ss_pred cEEEEEccchhcc---hHHHHHHHHhCC-------------------------cccEEEEeCCcccc
Confidence 8999999999874 234556666665 47999999999743
No 72
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.72 E-value=9.7e-18 Score=159.16 Aligned_cols=136 Identities=15% Similarity=0.187 Sum_probs=94.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 150 (326)
.|+++++++|||||||++|++|+++.+... +.+++|++||++|+.|+++.+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~----------------------g~~~lvl~Pt~~La~Q~~~~~~------ 52 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK----------------------RLRTVILAPTRVVASEMYEALR------ 52 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT----------------------TCCEEEEESSHHHHHHHHHHTT------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC----------------------CCCEEEECcHHHHHHHHHHHhC------
Confidence 378999999999999999999999766432 4589999999999999988775
Q ss_pred CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhC-C
Q 020452 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML-P 229 (326)
Q Consensus 151 ~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l-~ 229 (326)
++.+....|+... .-..+.-+.+.|.+.+...+... ..+.+++++|+||+|++ +.++......+.... +
T Consensus 53 ~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~ 122 (431)
T 2v6i_A 53 GEPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM 122 (431)
T ss_dssp TSCEEEC--------------CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC
Confidence 4455555544221 11123456677888876655432 45888999999999997 333333334443332 2
Q ss_pred CCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 230 MTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
..+|+++||||++..
T Consensus 123 ------------------------~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 123 ------------------------GDAGAIFMTATPPGT 137 (431)
T ss_dssp ------------------------TSCEEEEEESSCTTC
T ss_pred ------------------------CCCcEEEEeCCCCcc
Confidence 568999999999854
No 73
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.69 E-value=1.2e-16 Score=156.18 Aligned_cols=133 Identities=17% Similarity=0.037 Sum_probs=102.1
Q ss_pred CCCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 53 GFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
|| .|+|+|.+++..+ +..|+++++.||||+|||++|++|++.. +.+++|+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------------------------~~~v~i~ 53 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------------------------KPKVLFV 53 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------------------------CSEEEEE
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------------------------CCeEEEE
Confidence 45 7899999977653 3579999999999999999999999871 3489999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCC---------------------------------HHHHH---------
Q 020452 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMS---------------------------------TEKQE--------- 167 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~---------------------------------~~~~~--------- 167 (326)
+||++|+.|+.+.+..+.+..++++..+.|..+ .+...
T Consensus 54 ~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~ 133 (551)
T 3crv_A 54 VRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQ 133 (551)
T ss_dssp ESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCc
Confidence 999999999999998887766788887776321 11111
Q ss_pred ---------HHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 168 ---------RLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 168 ---------~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
+.....++|||+|+..|++...+.. ........++||||||.+.+
T Consensus 134 ~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~--~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 134 DKFCPYYSLLNSLYKADVIALTYPYFFIDRYREF--IDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTT--SCCCSTTEEEEETTGGGGGG
T ss_pred CCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHh--cCCCcCCeEEEEecccchHH
Confidence 2233478999999999988654332 11124667899999999987
No 74
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.68 E-value=2.1e-17 Score=164.11 Aligned_cols=138 Identities=17% Similarity=0.091 Sum_probs=101.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 150 (326)
+|++++++||||||||. +++..+... .+++|++|||+||.|+++.+...
T Consensus 154 ~rk~vlv~apTGSGKT~----~al~~l~~~-----------------------~~gl~l~PtR~LA~Qi~~~l~~~---- 202 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY----HAIQKYFSA-----------------------KSGVYCGPLKLLAHEIFEKSNAA---- 202 (677)
T ss_dssp CCEEEEEECCTTSSHHH----HHHHHHHHS-----------------------SSEEEEESSHHHHHHHHHHHHHT----
T ss_pred CCCEEEEEcCCCCCHHH----HHHHHHHhc-----------------------CCeEEEeCHHHHHHHHHHHHHhc----
Confidence 78999999999999997 344444321 14599999999999999998876
Q ss_pred CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCC
Q 020452 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230 (326)
Q Consensus 151 ~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~ 230 (326)
++++..++|+...... ......+++++|++.+ .....++++|+||+|++++.+++..+..++..++.
T Consensus 203 g~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~-----------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~ 269 (677)
T 3rc3_A 203 GVPCDLVTGEERVTVQ--PNGKQASHVSCTVEMC-----------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA 269 (677)
T ss_dssp TCCEEEECSSCEECCS--TTCCCCSEEEEEGGGC-----------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE
T ss_pred CCcEEEEECCeeEEec--CCCcccceeEecHhHh-----------hhcccCCEEEEecceecCCccchHHHHHHHHccCc
Confidence 7788888887543000 0001245666666543 22466899999999999999999999999888862
Q ss_pred CCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHh
Q 020452 231 TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275 (326)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l 275 (326)
...|++++|||.+....+..+.
T Consensus 270 -----------------------~~i~il~~SAT~~~i~~l~~~~ 291 (677)
T 3rc3_A 270 -----------------------EEVHLCGEPAAIDLVMELMYTT 291 (677)
T ss_dssp -----------------------EEEEEEECGGGHHHHHHHHHHH
T ss_pred -----------------------cceEEEeccchHHHHHHHHHhc
Confidence 4689999999976555555544
No 75
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.60 E-value=1.1e-15 Score=148.96 Aligned_cols=132 Identities=20% Similarity=0.161 Sum_probs=86.8
Q ss_pred HCCCCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 020452 51 RLGFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (326)
-.|| .|+|+|.+++..+ +.+|+++++.+|||+|||++|++|++.. +.+++
T Consensus 3 ~~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------------------~~~~~ 55 (540)
T 2vl7_A 3 VLKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------------------KKKVL 55 (540)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------------------TCEEE
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------------------CCcEE
Confidence 3577 8999999987543 3578999999999999999999998642 34899
Q ss_pred EEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCH--------H-----------------------------------
Q 020452 128 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST--------E----------------------------------- 164 (326)
Q Consensus 128 il~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~--------~----------------------------------- 164 (326)
|++||++|+.|+.+.+..+ ++++..+.|.... .
T Consensus 56 ~~~~t~~l~~q~~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~ 131 (540)
T 2vl7_A 56 IFTRTHSQLDSIYKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVD 131 (540)
T ss_dssp EEESCHHHHHHHHHHHGGG----TCCEEEC--------------------------------------------------
T ss_pred EEcCCHHHHHHHHHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcC
Confidence 9999999999999887764 4455444432210 0
Q ss_pred ----HHHHHHhcCCCEEEeCcHHHHHHHhcCCcc----cccCCCeeEEeecchhHhh
Q 020452 165 ----KQERLLKARPELVVGTPGRLWELMSGGEKH----LVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 165 ----~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~----~~~l~~l~~lViDEah~l~ 213 (326)
...+.....++|||+|+..|.+-...+... ...+....++||||||.+.
T Consensus 132 ~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 132 YCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp -------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 000011235799999999998744321100 0123567899999999994
No 76
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.58 E-value=2.4e-15 Score=145.13 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=106.2
Q ss_pred CChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.|+|+|.++++.+. ..+++.++..+||+|||+.++..+.. +... ....++|||||
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~~--------------------~~~~~~LIv~P- 94 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKE--------------------NELTPSLVICP- 94 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHHT--------------------TCCSSEEEEEC-
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHhc--------------------CCCCCEEEEcc-
Confidence 79999999987653 36789999999999999997554443 3211 12347999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
.+|+.|+.+.+++++. +.++..++|+... ......+|+|+|++.+..... .....+++||+||||++
T Consensus 95 ~~l~~qw~~e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~------l~~~~~~~vIvDEaH~~ 161 (500)
T 1z63_A 95 LSVLKNWEEELSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNI 161 (500)
T ss_dssp STTHHHHHHHHHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGG
T ss_pred HHHHHHHHHHHHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch------hcCCCcCEEEEeCcccc
Confidence 5699999999999865 4566666665421 112357999999999854332 23456899999999999
Q ss_pred hhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 213 ~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.+... .....+..++ ..+.+++|||..
T Consensus 162 kn~~~--~~~~~l~~l~-------------------------~~~~l~LTaTP~ 188 (500)
T 1z63_A 162 KNPQT--KIFKAVKELK-------------------------SKYRIALTGTPI 188 (500)
T ss_dssp SCTTS--HHHHHHHTSC-------------------------EEEEEEECSSCS
T ss_pred CCHhH--HHHHHHHhhc-------------------------cCcEEEEecCCC
Confidence 75432 3344455553 357899999984
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.49 E-value=1.5e-14 Score=149.64 Aligned_cols=134 Identities=22% Similarity=0.188 Sum_probs=92.5
Q ss_pred CChHHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~-g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
.|+|+|.+++..++.. +.+++++++||+|||+.++..+...+.. +...++|||||+ .
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~---------------------g~~~rvLIVvP~-s 210 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS---------------------GAAERVLIIVPE-T 210 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT---------------------SSCCCEEEECCT-T
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh---------------------CCCCeEEEEeCH-H
Confidence 7899999999887643 4588999999999999997776665422 123379999999 9
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH--HHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER--LLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 135 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~--~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
|+.|+.+.+.+.+ ++++..+.|+........ ......+|+|+|++.+...... .......++++||+||||++
T Consensus 211 Ll~Qw~~E~~~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~--~~~l~~~~~dlVIvDEAH~~ 285 (968)
T 3dmq_A 211 LQHQWLVEMLRRF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR--LEHLCEAEWDLLVVDEAHHL 285 (968)
T ss_dssp THHHHHHHHHHHS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT--THHHHTSCCCEEEECCSSCC
T ss_pred HHHHHHHHHHHHh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHH--HHHhhhcCCCEEEehhhHhh
Confidence 9999999987664 566666655432211100 0112568999999887532111 11233567899999999999
Q ss_pred hhCC
Q 020452 213 IENG 216 (326)
Q Consensus 213 ~~~~ 216 (326)
...+
T Consensus 286 kn~~ 289 (968)
T 3dmq_A 286 VWSE 289 (968)
T ss_dssp CCBT
T ss_pred cCCC
Confidence 7443
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.47 E-value=5.7e-13 Score=132.47 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=108.3
Q ss_pred CChHHHHHHHHHHH--------hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 020452 56 EPTPIQKACIPAAA--------HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l--------~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (326)
.++|+|.+++..+. ..+...|+..+||+|||+.++..+...+... ........++|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~----------------~~~~p~~~~~L 118 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS----------------PDCKPEIDKVI 118 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC----------------TTSSCSCSCEE
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhC----------------ccccCCCCcEE
Confidence 68999999998764 2456789999999999999877665543211 00111234699
Q ss_pred EEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHH--HHHhc------CCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 128 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE--RLLKA------RPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 128 il~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~--~~~~~------~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
||+|+ +|+.|+.+.+.+++.. .+.+..++++....... ..... ..+|+|+|++.+...... ....
T Consensus 119 iV~P~-sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~-----l~~~ 191 (644)
T 1z3i_X 119 VVSPS-SLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV-----LHKG 191 (644)
T ss_dssp EEECH-HHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT-----TTTS
T ss_pred EEecH-HHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH-----hhcC
Confidence 99997 8999999999999765 45666666664332211 11111 478999999998654421 2234
Q ss_pred CeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 200 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.+++||+||||++-+.. ......+..++ ....+++|||.-
T Consensus 192 ~~~~vI~DEaH~ikn~~--~~~~~al~~l~-------------------------~~~rl~LTgTPi 231 (644)
T 1z3i_X 192 KVGLVICDEGHRLKNSD--NQTYLALNSMN-------------------------AQRRVLISGTPI 231 (644)
T ss_dssp CCCEEEETTGGGCCTTC--HHHHHHHHHHC-------------------------CSEEEEECSSCS
T ss_pred CccEEEEECceecCChh--hHHHHHHHhcc-------------------------cCcEEEEecCcc
Confidence 67899999999986432 22333344443 356799999974
No 79
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.44 E-value=4.9e-13 Score=132.06 Aligned_cols=83 Identities=24% Similarity=0.308 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.|+|.|.+.+..+ +.+|+++++.||||+|||++|++|++..+... +.+++|++||
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----------------------~~kvli~t~T 60 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----------------------KLKVLYLVRT 60 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----------------------TCEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----------------------CCeEEEECCC
Confidence 6899999998643 35899999999999999999999999987432 3489999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcC
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGG 160 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~ 160 (326)
++|+.|+.+.+..+....++++..+.|+
T Consensus 61 ~~l~~Qi~~el~~l~~~~~~~~~~l~gr 88 (620)
T 4a15_A 61 NSQEEQVIKELRSLSSTMKIRAIPMQGR 88 (620)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCEEECCCH
T ss_pred HHHHHHHHHHHHHHhhccCeEEEEEECC
Confidence 9999999999999877666776665543
No 80
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.41 E-value=9.4e-13 Score=133.99 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=109.3
Q ss_pred CChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.++|+|.+++..++ ..+++.|+..++|.|||+.++..+...+... .....+|||||
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~--------------------~~~~~~LIV~P- 294 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR--------------------RQNGPHIIVVP- 294 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH--------------------SCCSCEEEECC-
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc--------------------CCCCCEEEEEC-
Confidence 68999999997542 4788999999999999999876665544322 11336899999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH------------hcCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL------------KARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~------------~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
.+|+.|+.+.+.+++. ++++...+|+.......... ....+|+|+|++.+...... ..-..
T Consensus 295 ~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-----l~~~~ 367 (800)
T 3mwy_W 295 LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-----LGSIK 367 (800)
T ss_dssp TTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH-----HHTSE
T ss_pred chHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH-----HhcCC
Confidence 7789999999999864 46777777765544333221 13578999999998654321 22335
Q ss_pred eeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 201 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 201 l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
+++||+||||++-+.. ......+..++ ....+++|||.-
T Consensus 368 w~~vIvDEaH~lkn~~--s~~~~~l~~l~-------------------------~~~rl~LTgTPi 406 (800)
T 3mwy_W 368 WQFMAVDEAHRLKNAE--SSLYESLNSFK-------------------------VANRMLITGTPL 406 (800)
T ss_dssp EEEEEETTGGGGCCSS--SHHHHHHTTSE-------------------------EEEEEEECSCCC
T ss_pred cceeehhhhhhhcCch--hHHHHHHHHhh-------------------------hccEEEeeCCcC
Confidence 8899999999985432 23444444443 356788999983
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.19 E-value=2.2e-10 Score=112.45 Aligned_cols=133 Identities=23% Similarity=0.250 Sum_probs=102.6
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|....-.+ ..|+ |..+.||+|||+++.+|++-..+. |..+.|++|
T Consensus 72 lg~-r~~dvQligg~~L-~~G~--iaEM~TGEGKTLva~lp~~lnAL~-----------------------G~~vhVvT~ 124 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIAL-HEGK--VAEMKTGEGKTLAATMPIYLNALI-----------------------GKGVHLVTV 124 (822)
T ss_dssp TSC-CCCHHHHHHHHHH-HTTC--EEECCTTSCHHHHTHHHHHHHHTT-----------------------SSCEEEEES
T ss_pred hCC-CCcHHHHHHHHHH-hCCC--hhhccCCCCccHHHHHHHHHHHhc-----------------------CCceEEEec
Confidence 787 8999999998766 5777 899999999999999999865432 447999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcC--------------------------------------------------C
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGG--------------------------------------------------M 161 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~--------------------------------------------------~ 161 (326)
+..||.|-++++..+...+|++|++++.. .
T Consensus 125 ndyLA~rdae~m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 204 (822)
T 3jux_A 125 NDYLARRDALWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVEL 204 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEEC
T ss_pred cHHHHHhHHHHHHHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccC
Confidence 99999999999999999999999999872 1
Q ss_pred CHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEeecchhHhh
Q 020452 162 STEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 162 ~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lViDEah~l~ 213 (326)
+........ .|||..||..-| .++|+.+. ........+.+.|+||+|.++
T Consensus 205 ~~~err~aY--~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 205 KEITRKEAY--LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp CBCCHHHHH--HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred CHHHHHHHh--cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 212222222 489999999776 56665431 111224668999999999876
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.96 E-value=1e-09 Score=108.22 Aligned_cols=134 Identities=21% Similarity=0.275 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHH--HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKT--LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT--~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
++.|+.+++.++ .++.+++.|++||||| .+++++.+..+. ...+.++++++||..+
T Consensus 151 ~~~Q~~Ai~~~l-~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~---------------------~~~~~~vll~APTg~A 208 (608)
T 1w36_D 151 INWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQMA---------------------DGERCRIRLAAPTGKA 208 (608)
T ss_dssp CCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHHHHHHHHHHTC---------------------SSCCCCEEEEBSSHHH
T ss_pred CHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHHHhh---------------------hcCCCeEEEEeCChhH
Confidence 789999999986 7899999999999999 445566554320 1224589999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEE-eCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVV-GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV-~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
+.++.+.+......+++...... .... . ....|-++ .+|+.. . +.... .....+++||||||+ |++
T Consensus 209 A~~L~e~~~~~~~~l~l~~~~~~-~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~---~~~l~~d~lIIDEAs-ml~ 275 (608)
T 1w36_D 209 AARLTESLGKALRQLPLTDEQKK-RIPE--D----ASTLHRLLGAQPGSQ-R-LRHHA---GNPLHLDVLVVDEAS-MID 275 (608)
T ss_dssp HHHHHHHHTHHHHHSSCCSCCCC-SCSC--C----CBTTTSCC-------------CT---TSCCSCSEEEECSGG-GCB
T ss_pred HHHHHHHHHHHHhcCCCCHHHHh-ccch--h----hhhhHhhhccCCCch-H-HHhcc---CCCCCCCEEEEechh-hCC
Confidence 99999888776654443211000 0000 0 00111112 223221 1 11111 112368999999999 554
Q ss_pred CCCHHHHHHHHHhCC
Q 020452 215 NGHFRELQSIIDMLP 229 (326)
Q Consensus 215 ~~~~~~i~~il~~l~ 229 (326)
...+..++..++
T Consensus 276 ---~~~~~~Ll~~l~ 287 (608)
T 1w36_D 276 ---LPMMSRLIDALP 287 (608)
T ss_dssp ---HHHHHHHHHTCC
T ss_pred ---HHHHHHHHHhCC
Confidence 567788888887
No 83
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.31 E-value=1.9e-06 Score=85.53 Aligned_cols=68 Identities=22% Similarity=0.180 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++-|.+|+..++.+..-.+|+||+|||||.+..-.+.+.+ .. +.++|+++||..-
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~-~~----------------------~~~ILv~a~TN~A 245 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV-KQ----------------------GLKVLCCAPSNIA 245 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH-HT----------------------TCCEEEEESSHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH-hC----------------------CCeEEEEcCchHH
Confidence 578999999998864334568999999999988654444333 21 3489999999999
Q ss_pred HHHHHHHHHHH
Q 020452 136 ALQVTDHLKEV 146 (326)
Q Consensus 136 ~~Q~~~~l~~~ 146 (326)
+.++.+.+...
T Consensus 246 vD~i~erL~~~ 256 (646)
T 4b3f_X 246 VDNLVERLALC 256 (646)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99998887654
No 84
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.28 E-value=5.7e-06 Score=78.71 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=50.9
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 020452 47 KSIYRLGFKEPTPIQKACIPAAAHQ----GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122 (326)
Q Consensus 47 ~~l~~~g~~~p~~~Q~~~i~~~l~~----g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (326)
.....+.|..+++-|++++..++.. ...+++.|+.|||||.+. ..++..+... +
T Consensus 16 ~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~---------------------~ 73 (459)
T 3upu_A 16 PRGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST---------------------G 73 (459)
T ss_dssp -----CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT---------------------T
T ss_pred cccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc---------------------C
Confidence 3455578889999999999876432 348999999999999654 3444444322 1
Q ss_pred CeEEEEEeCcHHHHHHHHHHH
Q 020452 123 HLRALIITPTRELALQVTDHL 143 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l 143 (326)
...+++++||...+..+.+.+
T Consensus 74 ~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 74 ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCCEEEEESSHHHHHHHHHHH
T ss_pred CceEEEecCcHHHHHHHHhhh
Confidence 136899999998887665544
No 85
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=1.6e-05 Score=80.57 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=53.5
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+++.|.+|+..++ .+.-+++.||+|||||.+..- ++..+.... +.++++++||..
T Consensus 359 ~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~~i~~-~i~~l~~~~---------------------~~~ILv~a~tn~ 415 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLSKIH---------------------KDRILVCAPSNV 415 (802)
T ss_dssp CCCCHHHHHHHHHHT-TCSEEEEECSTTSSHHHHHHH-HHHHHHHHH---------------------CCCEEEEESSHH
T ss_pred ccCCHHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHH-HHHHHHhCC---------------------CCeEEEEcCcHH
Confidence 357899999999885 566789999999999987543 334343321 338999999999
Q ss_pred HHHHHHHHHHHH
Q 020452 135 LALQVTDHLKEV 146 (326)
Q Consensus 135 L~~Q~~~~l~~~ 146 (326)
.+.++.+.+...
T Consensus 416 A~d~l~~rL~~~ 427 (802)
T 2xzl_A 416 AVDHLAAKLRDL 427 (802)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
No 86
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.25 E-value=7e-06 Score=81.10 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=52.7
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+++.|..++..++ .+.-+++.||+|||||.+..- ++..+.. ..+.++++++||..
T Consensus 179 ~~ln~~Q~~av~~~l-~~~~~li~GppGTGKT~~~~~-~i~~l~~---------------------~~~~~ilv~a~tn~ 235 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLAR---------------------QGNGPVLVCAPSNI 235 (624)
T ss_dssp CCCCHHHHHHHHHHH-TCSEEEEECCTTSCHHHHHHH-HHHHHHT---------------------SSSCCEEEEESSHH
T ss_pred CCCCHHHHHHHHHHh-cCCCeEEECCCCCCHHHHHHH-HHHHHHH---------------------cCCCeEEEEeCcHH
Confidence 357899999998886 566789999999999987543 3333321 12448999999999
Q ss_pred HHHHHHHHHHHH
Q 020452 135 LALQVTDHLKEV 146 (326)
Q Consensus 135 L~~Q~~~~l~~~ 146 (326)
.+.++.+.+...
T Consensus 236 A~~~l~~~l~~~ 247 (624)
T 2gk6_A 236 AVDQLTEKIHQT 247 (624)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999998887654
No 87
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.13 E-value=1e-05 Score=78.99 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=48.1
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++.|..++..++ .++.+++.|+.|||||.+. ..++..+.. .+.++++++||...
T Consensus 189 ~L~~~Q~~Av~~~~-~~~~~~I~G~pGTGKTt~i-~~l~~~l~~----------------------~g~~Vl~~ApT~~A 244 (574)
T 3e1s_A 189 GLSEEQASVLDQLA-GHRLVVLTGGPGTGKSTTT-KAVADLAES----------------------LGLEVGLCAPTGKA 244 (574)
T ss_dssp TCCHHHHHHHHHHT-TCSEEEEECCTTSCHHHHH-HHHHHHHHH----------------------TTCCEEEEESSHHH
T ss_pred CCCHHHHHHHHHHH-hCCEEEEEcCCCCCHHHHH-HHHHHHHHh----------------------cCCeEEEecCcHHH
Confidence 68999999999885 7788999999999999764 334433321 13479999999998
Q ss_pred HHHHHHH
Q 020452 136 ALQVTDH 142 (326)
Q Consensus 136 ~~Q~~~~ 142 (326)
+..+.+.
T Consensus 245 a~~L~e~ 251 (574)
T 3e1s_A 245 ARRLGEV 251 (574)
T ss_dssp HHHHHHH
T ss_pred HHHhHhh
Confidence 8776654
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.07 E-value=2.4e-05 Score=79.21 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++.|.+++..++ .+.-.++.||+|||||.+.. .++..+... .+.++++++||...
T Consensus 356 ~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~ti~-~~i~~l~~~---------------------~~~~ilv~a~tn~A 412 (800)
T 2wjy_A 356 DLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---------------------GNGPVLVCAPSNIA 412 (800)
T ss_dssp CCCHHHHHHHHHHH-TSSEEEEECCTTSCHHHHHH-HHHHHHHTT---------------------CSSCEEEEESSHHH
T ss_pred CCCHHHHHHHHHhc-cCCeEEEEcCCCCCHHHHHH-HHHHHHHHc---------------------CCCcEEEEcCcHHH
Confidence 56899999999885 56678999999999998753 334433211 24489999999999
Q ss_pred HHHHHHHHHHH
Q 020452 136 ALQVTDHLKEV 146 (326)
Q Consensus 136 ~~Q~~~~l~~~ 146 (326)
+.++.+.+...
T Consensus 413 ~~~l~~~l~~~ 423 (800)
T 2wjy_A 413 VDQLTEKIHQT 423 (800)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99988887654
No 89
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.30 E-value=0.00066 Score=67.39 Aligned_cols=69 Identities=26% Similarity=0.405 Sum_probs=53.0
Q ss_pred CCCCChHHHHHHHHHHH---hcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 53 GFKEPTPIQKACIPAAA---HQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~l---~~g~-dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
+| .|++.|..++..+. ..|. ..++.+.||||||+++.- ++... +..+||
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~-------------------------~~~~lv 58 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL-------------------------GRPALV 58 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH-------------------------TCCEEE
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh-------------------------CCCEEE
Confidence 56 89999999987653 2343 567889999999987643 22322 114899
Q ss_pred EeCcHHHHHHHHHHHHHHHc
Q 020452 129 ITPTRELALQVTDHLKEVAK 148 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~~~~ 148 (326)
|+|+..+|.|+++.++.++.
T Consensus 59 v~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 59 LAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp EESSHHHHHHHHHHHHHHCT
T ss_pred EecCHHHHHHHHHHHHHHCC
Confidence 99999999999999999965
No 90
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.09 E-value=0.0013 Score=64.95 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+++-|.+++. ..+..++|.|+.|||||.+.+--+...+... ...+-+++++++|+.
T Consensus 8 ~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~-------------------~~~~~~iL~ltft~~ 65 (647)
T 3lfu_A 8 DSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLMSVE-------------------NCSPYSIMAVTFTNK 65 (647)
T ss_dssp TTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTS-------------------CCCGGGEEEEESSHH
T ss_pred hcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHHHhC-------------------CCChhhEEEEeccHH
Confidence 368999999995 2467899999999999988655554443211 012237999999999
Q ss_pred HHHHHHHHHHHHHc
Q 020452 135 LALQVTDHLKEVAK 148 (326)
Q Consensus 135 L~~Q~~~~l~~~~~ 148 (326)
.+.++.+.+..+..
T Consensus 66 aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 66 AAAEMRHRIGQLMG 79 (647)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
No 91
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.06 E-value=0.0036 Score=57.76 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.++|+|...+..+ ...+-+++..+-+.|||.+....++..+.. ..+..+++++|+++.
T Consensus 163 ~L~p~Qk~il~~l-~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---------------------~~g~~v~~vA~t~~q 220 (385)
T 2o0j_A 163 QLRDYQRDMLKIM-SSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------------------NKDKAVGILAHKGSM 220 (385)
T ss_dssp CCCHHHHHHHHHH-HHSSEEEEEECSSSCHHHHHHHHHHHHHHS---------------------SSSCEEEEEESSHHH
T ss_pred CCCHHHHHHHHhh-ccCcEEEEEEcCcCChhHHHHHHHHHHHHh---------------------CCCCeEEEEeCCHHH
Confidence 7899999999876 345668899999999999876655543321 124589999999999
Q ss_pred HHHHHHHHHHHHcC
Q 020452 136 ALQVTDHLKEVAKG 149 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~ 149 (326)
|..+.+.++.+...
T Consensus 221 A~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 221 SAEVLDRTKQAIEL 234 (385)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99988888877654
No 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.99 E-value=0.0039 Score=50.75 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.|+.+++.||+|+|||..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57889999999999996653
No 93
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.70 E-value=0.0033 Score=62.40 Aligned_cols=71 Identities=17% Similarity=0.088 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++-|.+++.. .+..++|.|+.|||||.+.+--+...+.... ....++++++.|+..
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-------------------~~~~~IL~lTfT~~A 59 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------------------YQARHIAAVTFTNKA 59 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-------------------CCGGGEEEEESSHHH
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-------------------CCHHHeEEEeccHHH
Confidence 478999999853 4688999999999999887655555443210 112379999999999
Q ss_pred HHHHHHHHHHHHc
Q 020452 136 ALQVTDHLKEVAK 148 (326)
Q Consensus 136 ~~Q~~~~l~~~~~ 148 (326)
+.++.+.+.....
T Consensus 60 a~em~~Rl~~~l~ 72 (673)
T 1uaa_A 60 AREMKERVGQTLG 72 (673)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988754
No 94
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.018 Score=51.69 Aligned_cols=26 Identities=23% Similarity=0.092 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.+.++++.||+|+|||.+.-. ++..+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHH
Confidence 346899999999999977533 44443
No 95
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.52 E-value=0.0077 Score=60.33 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=54.6
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+++-|.+++.. .+..++|.|+.|||||.+..--+...+... .....++|+++.|+.
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~-------------------~~~p~~IL~vTFTnk 67 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK-------------------HVAPWNILAITFTNK 67 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTT-------------------CCCGGGEEEEESSHH
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc-------------------CCCHHHeEEEeccHH
Confidence 3689999999853 467899999999999988765555544211 012337999999999
Q ss_pred HHHHHHHHHHHHHc
Q 020452 135 LALQVTDHLKEVAK 148 (326)
Q Consensus 135 L~~Q~~~~l~~~~~ 148 (326)
.|.++.+++..+..
T Consensus 68 AA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 68 AAREMRERVQSLLG 81 (724)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 96
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.37 E-value=0.011 Score=58.52 Aligned_cols=67 Identities=25% Similarity=0.348 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHH---hcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAA---HQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l---~~g~-dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.|+..|..++..+. ..|. ...+.+.||||||++..- ++... +..+|||+|
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~-------------------------~~~~lvv~~ 65 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV-------------------------NKPTLVIAH 65 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH-------------------------CCCEEEECS
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh-------------------------CCCEEEEEC
Confidence 78999988887653 2343 567889999999977643 22221 114899999
Q ss_pred cHHHHHHHHHHHHHHHc
Q 020452 132 TRELALQVTDHLKEVAK 148 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~ 148 (326)
+..+|.|+++.++.++.
T Consensus 66 ~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 66 NKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp SHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 99999999999999965
No 97
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.24 E-value=0.007 Score=56.72 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=51.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~ 153 (326)
=.++.|+.|+|||....- .+. ..+.+|++||++++..+.+.+... +..
T Consensus 163 v~~I~G~aGsGKTt~I~~----~~~------------------------~~~~lVlTpT~~aa~~l~~kl~~~----~~~ 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS----RVN------------------------FEEDLILVPGRQAAEMIRRRANAS----GII 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHH----HCC------------------------TTTCEEEESCHHHHHHHHHHHTTT----SCC
T ss_pred EEEEEcCCCCCHHHHHHH----Hhc------------------------cCCeEEEeCCHHHHHHHHHHhhhc----Ccc
Confidence 357899999999976422 110 014699999999998887776432 110
Q ss_pred EEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 154 v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
.....-|.|-++++ ++... ......++|||||+- |++.
T Consensus 211 ------------------~~~~~~V~T~dsfL--~~~~~---~~~~~~d~liiDE~s-m~~~ 248 (446)
T 3vkw_A 211 ------------------VATKDNVRTVDSFL--MNYGK---GARCQFKRLFIDEGL-MLHT 248 (446)
T ss_dssp ------------------CCCTTTEEEHHHHH--HTTTS---SCCCCCSEEEEETGG-GSCH
T ss_pred ------------------ccccceEEEeHHhh--cCCCC---CCCCcCCEEEEeCcc-cCCH
Confidence 01123356766653 22211 112247899999997 4443
No 98
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.06 E-value=0.015 Score=61.77 Aligned_cols=72 Identities=29% Similarity=0.319 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+|+-|.++|. ..+++++|.|..|||||.+.+--++..+.... .....-+++++++|++.
T Consensus 10 ~~t~eQ~~~i~---~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~-----------------~~~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 10 TWTDDQWNAIV---STGQDILVAAAAGSGKTAVLVERMIRKITAEE-----------------NPIDVDRLLVVTFTNAS 69 (1232)
T ss_dssp CCCHHHHHHHH---CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSS-----------------SCCCGGGEEEECSSHHH
T ss_pred CCCHHHHHHHh---CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC-----------------CCCCccceEEEeccHHH
Confidence 68999999984 35789999999999999887666666553210 00122379999999999
Q ss_pred HHHHHHHHHHHH
Q 020452 136 ALQVTDHLKEVA 147 (326)
Q Consensus 136 ~~Q~~~~l~~~~ 147 (326)
+.++.+.+...+
T Consensus 70 a~e~~~ri~~~l 81 (1232)
T 3u4q_A 70 AAEMKHRIAEAL 81 (1232)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 99
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.03 E-value=0.021 Score=51.08 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
+..+++.||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999665
No 100
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.00 E-value=0.14 Score=44.31 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
..+++.||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 579999999999997653
No 101
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.95 E-value=0.054 Score=49.09 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4568999999999999765
No 102
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.87 E-value=0.013 Score=49.88 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=50.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 150 (326)
.|.=+++.|++|+|||.+.+-.+ .++.. .+.+++++.|...- . . ...+....
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~-~r~~~----------------------~g~kVli~~~~~d~--r-~--~~~i~srl 62 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRL-HRLEY----------------------ADVKYLVFKPKIDT--R-S--IRNIQSRT 62 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHH-HHHHH----------------------TTCCEEEEEECCCG--G-G--CSSCCCCC
T ss_pred CcEEEEEECCCCCcHHHHHHHHH-HHHHh----------------------cCCEEEEEEeccCc--h-H--HHHHHHhc
Confidence 45566788999999997654333 33211 14478888776531 0 0 00112222
Q ss_pred CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 151 ~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
|+.. ..+-+.+...+++.+... ..-...++|||||++.+
T Consensus 63 G~~~-------------------~~~~~~~~~~i~~~i~~~----~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 63 GTSL-------------------PSVEVESAPEILNYIMSN----SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp CCSS-------------------CCEEESSTHHHHHHHHST----TSCTTCCEEEECSGGGS
T ss_pred CCCc-------------------cccccCCHHHHHHHHHHH----hhCCCCCEEEEecCccC
Confidence 2211 123456667777777542 11234789999999865
No 103
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.79 E-value=0.0049 Score=48.89 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|..+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999654
No 104
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.58 E-value=0.025 Score=46.78 Aligned_cols=21 Identities=19% Similarity=-0.016 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|+=.++.+|.|+|||...+-
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHH
Confidence 345567799999999966543
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.57 E-value=0.038 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.140 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|+=.++.||.|+|||...+-
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLS 22 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHH
Confidence 355578899999999977543
No 106
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.54 E-value=0.16 Score=41.66 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
.++++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999654
No 107
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.48 E-value=0.081 Score=47.07 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=18.9
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDML 228 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l 228 (326)
...+++++||+|.+........+..+++..
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~ 133 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAY 133 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhC
Confidence 357899999999886122344455555443
No 108
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.44 E-value=0.14 Score=46.49 Aligned_cols=18 Identities=28% Similarity=0.180 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
.+.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999765
No 109
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.19 E-value=0.3 Score=40.51 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999664
No 110
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.17 E-value=0.14 Score=42.09 Aligned_cols=72 Identities=18% Similarity=0.315 Sum_probs=54.9
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..+++.+... ++.+..++|+.........+ .....|+|+|. .+..+ .++.
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~G----ldi~ 121 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASKG----LDFP 121 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHTT----CCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhcC----CCcc
Confidence 37999999999999999888776 78899999998876654433 34689999992 33444 6677
Q ss_pred CeeEEeecc
Q 020452 200 TLSFFVLDE 208 (326)
Q Consensus 200 ~l~~lViDE 208 (326)
+++++|.=+
T Consensus 122 ~v~~VI~~d 130 (191)
T 2p6n_A 122 AIQHVINYD 130 (191)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEeC
Confidence 888887643
No 111
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.16 E-value=0.09 Score=41.86 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=55.1
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..+++.+... ++.+..++|+.+.......+ .....|+|+|. .+..+ .++.
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----ld~~ 102 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAARG----IDIE 102 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTTT----CCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----Cchh
Confidence 37999999999999999888775 78899999998876654433 24678999993 33333 6677
Q ss_pred CeeEEeecch
Q 020452 200 TLSFFVLDEA 209 (326)
Q Consensus 200 ~l~~lViDEa 209 (326)
+++++|.-+.
T Consensus 103 ~~~~Vi~~~~ 112 (163)
T 2hjv_A 103 NISLVINYDL 112 (163)
T ss_dssp CCSEEEESSC
T ss_pred cCCEEEEeCC
Confidence 8888886443
No 112
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.04 E-value=0.082 Score=49.57 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~ 90 (326)
+..+++.||+|+|||..+-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3589999999999997653
No 113
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.01 E-value=0.068 Score=52.60 Aligned_cols=102 Identities=21% Similarity=0.261 Sum_probs=64.6
Q ss_pred CChHHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~-g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
.+|.-|.+++..++.. ..-.++.|+-|.|||.+.-+.+ ..+. .+++|.+|+.+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~-------------------------~~~~vtAP~~~ 228 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIA-------------------------GRAIVTAPAKA 228 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSS-------------------------SCEEEECSSCC
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHH-------------------------hCcEEECCCHH
Confidence 6799999999887531 2346889999999996554433 3321 14699999998
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 135 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
-+..+.+...+ .|-...|..+.. ...+.++||||||=.+-
T Consensus 229 a~~~l~~~~~~-----------------------------~i~~~~Pd~~~~----------~~~~~dlliVDEAAaIp- 268 (671)
T 2zpa_A 229 STDVLAQFAGE-----------------------------KFRFIAPDALLA----------SDEQADWLVVDEAAAIP- 268 (671)
T ss_dssp SCHHHHHHHGG-----------------------------GCCBCCHHHHHH----------SCCCCSEEEEETGGGSC-
T ss_pred HHHHHHHHhhC-----------------------------CeEEeCchhhhh----------CcccCCEEEEEchhcCC-
Confidence 77654433211 022235655321 12347899999997553
Q ss_pred CCCHHHHHHHHH
Q 020452 215 NGHFRELQSIID 226 (326)
Q Consensus 215 ~~~~~~i~~il~ 226 (326)
...+..++.
T Consensus 269 ---~pll~~ll~ 277 (671)
T 2zpa_A 269 ---APLLHQLVS 277 (671)
T ss_dssp ---HHHHHHHHT
T ss_pred ---HHHHHHHHh
Confidence 556666664
No 114
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.94 E-value=0.21 Score=44.53 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=33.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----hcCCcEEEEcCCCchHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA----HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l----~~g~dvlv~apTGsGKT~~~ 89 (326)
+-..|+++.-.+.+.+.|...=. .|.. .|.++ ...+.+++.||+|+|||..+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 33579999888888888876311 1111 11111 12357999999999999765
No 115
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.84 E-value=0.074 Score=47.83 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHH---HhcCC---cEEEEcCCCchHHHHHHH
Q 020452 57 PTPIQKACIPAA---AHQGK---DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 57 p~~~Q~~~i~~~---l~~g~---dvlv~apTGsGKT~~~~l 91 (326)
+.|+|..++..+ +.+|+ .+++.||.|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 357777776554 23443 489999999999977643
No 116
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.83 E-value=0.29 Score=43.07 Aligned_cols=17 Identities=35% Similarity=0.307 Sum_probs=14.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
++++.||+|+|||...-
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999997653
No 117
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.78 E-value=0.13 Score=41.04 Aligned_cols=73 Identities=16% Similarity=0.380 Sum_probs=54.6
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..+++.+... ++.+..++|+.+.......+ .....|+|+|. .+..+ .++.
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----~d~~ 97 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARG----IDVQ 97 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTTT----CCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhcC----CCcc
Confidence 47999999999999988888764 77899999998876654433 24678999993 33333 6677
Q ss_pred CeeEEeecch
Q 020452 200 TLSFFVLDEA 209 (326)
Q Consensus 200 ~l~~lViDEa 209 (326)
+++++|.-+.
T Consensus 98 ~~~~Vi~~~~ 107 (165)
T 1fuk_A 98 QVSLVINYDL 107 (165)
T ss_dssp SCSEEEESSC
T ss_pred cCCEEEEeCC
Confidence 8888876443
No 118
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.70 E-value=0.078 Score=51.71 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=57.4
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+|+|...+..+ ...+.+++..+-|+|||.+....++..+.. ..+..+++++|+++.
T Consensus 163 ~l~p~Q~~i~~~l-~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~---------------------~~~~~i~~va~t~~q 220 (592)
T 3cpe_A 163 QLRDYQRDMLKIM-SSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------------------NKDKAVGILAHKGSM 220 (592)
T ss_dssp CCCHHHHHHHHHH-HHCSEEEEEECSSSCHHHHHHHHHHHHHHT---------------------SSSCEEEEEESSHHH
T ss_pred cCCHHHHHHHHhh-ccccEEEEEEcCccChHHHHHHHHHHHHHh---------------------CCCCeEEEEECCHHH
Confidence 5899999999876 456778999999999999876555544422 124489999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 020452 136 ALQVTDHLKEVAKGI 150 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~ 150 (326)
+..+.+.++.+....
T Consensus 221 A~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 221 SAEVLDRTKQAIELL 235 (592)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999888887654
No 119
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.67 E-value=0.02 Score=48.23 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+..+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999765
No 120
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.66 E-value=0.1 Score=41.97 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=54.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++++..+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+..+ .++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G----id~ 100 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCARG----IDV 100 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCTT----TCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhcC----CCc
Confidence 348999999999999888877664 78899999999876654433 24678999993 23333 678
Q ss_pred CCeeEEeecc
Q 020452 199 HTLSFFVLDE 208 (326)
Q Consensus 199 ~~l~~lViDE 208 (326)
..++++|.-+
T Consensus 101 ~~~~~Vi~~d 110 (175)
T 2rb4_A 101 KQVTIVVNFD 110 (175)
T ss_dssp TTEEEEEESS
T ss_pred ccCCEEEEeC
Confidence 8899888533
No 121
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.43 E-value=0.27 Score=44.10 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=28.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+|+++--++.+.+.+...=+.. ....++++.||+|+|||...
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~-------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQP-------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCT-------------TCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHhhC-------------CCCCeEEEECCCCCCHHHHH
Confidence 5666666777777776531100 12335999999999999765
No 122
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.34 E-value=0.16 Score=42.34 Aligned_cols=70 Identities=20% Similarity=0.350 Sum_probs=54.2
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..+++.+... ++.+..++|+.+...+...+. ...+|+|+|. .+..+ .++.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----idi~ 98 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAARG----LDIP 98 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTCS----SSCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhcC----CCCc
Confidence 38999999999999999888776 788999999998776654432 4678999993 33333 6778
Q ss_pred CeeEEee
Q 020452 200 TLSFFVL 206 (326)
Q Consensus 200 ~l~~lVi 206 (326)
+++++|.
T Consensus 99 ~v~~Vi~ 105 (212)
T 3eaq_A 99 QVDLVVH 105 (212)
T ss_dssp CBSEEEE
T ss_pred cCcEEEE
Confidence 8888774
No 123
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.93 E-value=0.41 Score=42.70 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56999999999999765
No 124
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.92 E-value=0.37 Score=42.90 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=28.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~ 89 (326)
+|+++--.+.+++.+... +.... ....++++.||+|+|||..+
T Consensus 27 ~~~~iiG~~~~~~~l~~~------------l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVF------------IAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSCHHHHHHHHHH------------HHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCChHHHHHHHHHH------------HHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 677777777777666431 21211 12358999999999999765
No 125
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.82 E-value=0.39 Score=43.20 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+..+++.||+|+|||...
T Consensus 44 ~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCEEEEECTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3568999999999999665
No 126
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.81 E-value=0.13 Score=42.48 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
|+=.++.||.|+|||.-.
T Consensus 20 g~l~fiyG~MgsGKTt~L 37 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTEL 37 (195)
T ss_dssp CEEEEEEECTTSCHHHHH
T ss_pred eEEEEEECCCCCcHHHHH
Confidence 455678999999999544
No 127
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.80 E-value=0.32 Score=40.23 Aligned_cols=27 Identities=26% Similarity=0.101 Sum_probs=22.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
....+++..++|.|||.+++-.++..+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~ 53 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV 53 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999877777665
No 128
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.64 E-value=0.072 Score=48.39 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999765
No 129
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=93.63 E-value=0.33 Score=38.96 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=54.4
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..+++.+... ++.+..++|+.........+. ....|+|+|. .+..+ .++.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----ldi~ 98 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRG----MDIE 98 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCSTT----CCGG
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chhcC----cchh
Confidence 37999999999999998888775 788999999988766544332 4678999994 22333 6677
Q ss_pred CeeEEeecch
Q 020452 200 TLSFFVLDEA 209 (326)
Q Consensus 200 ~l~~lViDEa 209 (326)
+++++|.-+.
T Consensus 99 ~~~~Vi~~d~ 108 (172)
T 1t5i_A 99 RVNIAFNYDM 108 (172)
T ss_dssp GCSEEEESSC
T ss_pred hCCEEEEECC
Confidence 7888876443
No 130
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.59 E-value=0.11 Score=43.61 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
|+=.++.++.|+|||...+-.+.... ..+.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~-----------------------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ-----------------------FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH-----------------------HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-----------------------HCCCEEEEEEeccC
Confidence 33346788999999966544333322 12448999998764
No 131
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.20 E-value=0.35 Score=41.09 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
|+=.++.|+-|+|||...+-.+.... ..+.+++++-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~-----------------------~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ-----------------------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH-----------------------TTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH-----------------------HCCCeEEEEeecCC
Confidence 55557788889999966544333322 23558898888764
No 132
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.10 E-value=0.56 Score=42.18 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
.+++.||.|+|||....
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999997653
No 133
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=92.98 E-value=0.16 Score=41.41 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=44.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH----HhcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL----LKARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++++.-+..+++.++.. ++.+..++|+.+....... ......|+|+|. . +..+ .++
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~~~G----ldi 112 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-V----AARG----LDI 112 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC---------------CC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-h----hhcC----CCc
Confidence 447999999999999988888764 7889999998775543322 234778999993 2 2332 567
Q ss_pred CCeeEEeec
Q 020452 199 HTLSFFVLD 207 (326)
Q Consensus 199 ~~l~~lViD 207 (326)
.+++++|.-
T Consensus 113 ~~~~~VI~~ 121 (185)
T 2jgn_A 113 SNVKHVINF 121 (185)
T ss_dssp CSBSEEEES
T ss_pred ccCCEEEEe
Confidence 778887763
No 134
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.86 E-value=0.24 Score=43.56 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
++++.||+|+|||....
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 59999999999996653
No 135
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.78 E-value=0.35 Score=45.12 Aligned_cols=18 Identities=39% Similarity=0.364 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+++.+++|+|||.....
T Consensus 99 vI~lvG~~GsGKTTt~~k 116 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGK 116 (433)
T ss_dssp EEEECCCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467789999999977544
No 136
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.69 E-value=0.076 Score=49.65 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=37.8
Q ss_pred ccccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 31 TEFDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~---g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
.+-.+|++++--+.+.+.|.+. .+..|.-++..-+ ...+.+++.||+|||||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~----~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI----RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC----CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCeeEEECcCCCCHHHHH
Confidence 4566899999888888888763 1223333332221 23578999999999999765
No 137
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=92.63 E-value=0.67 Score=42.28 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=55.8
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCccccc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
.+.++||.+++++-+..+++.+... ++.+..++|+.........+ ....+|+|+|. .+..+ .+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----id 341 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LD 341 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHTT----SC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcC----CC
Confidence 3568999999999999998888764 78899999999876554433 34678999994 44444 67
Q ss_pred CCCeeEEee
Q 020452 198 LHTLSFFVL 206 (326)
Q Consensus 198 l~~l~~lVi 206 (326)
+.+++++|.
T Consensus 342 ip~v~~Vi~ 350 (417)
T 2i4i_A 342 ISNVKHVIN 350 (417)
T ss_dssp CCCEEEEEE
T ss_pred cccCCEEEE
Confidence 888988875
No 138
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.27 E-value=0.22 Score=41.82 Aligned_cols=21 Identities=19% Similarity=-0.113 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|.=.++.++-|+|||...+-
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr 47 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIR 47 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 355568899999999965433
No 139
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.23 E-value=0.54 Score=44.10 Aligned_cols=21 Identities=33% Similarity=0.112 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|.-+++.|++|+|||...+-
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ 222 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALN 222 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456788899999999965543
No 140
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.19 E-value=1.5 Score=41.87 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=58.6
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.|+++.-+..+++.+..... .++.+..++|+.........+ ....+|||+|. .+..+ +++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G----iDi 408 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG----MDF 408 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS----CCC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhcC----CCc
Confidence 44899999999999999999988754 267888999999876654433 35788999995 34444 778
Q ss_pred CCeeEEeecch
Q 020452 199 HTLSFFVLDEA 209 (326)
Q Consensus 199 ~~l~~lViDEa 209 (326)
.++++||.-..
T Consensus 409 p~v~~VI~~~~ 419 (563)
T 3i5x_A 409 PNVHEVLQIGV 419 (563)
T ss_dssp TTCCEEEEESC
T ss_pred ccCCEEEEECC
Confidence 88888886543
No 141
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.97 E-value=0.12 Score=40.33 Aligned_cols=21 Identities=10% Similarity=0.099 Sum_probs=18.1
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~ 90 (326)
..+.++++.||+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 467899999999999997763
No 142
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.91 E-value=1.4 Score=39.04 Aligned_cols=23 Identities=13% Similarity=-0.148 Sum_probs=16.9
Q ss_pred HhcCC--cEEEEcCCCchHHHHHHH
Q 020452 69 AHQGK--DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 69 l~~g~--dvlv~apTGsGKT~~~~l 91 (326)
+.+++ .+++.||.|+|||.....
T Consensus 13 i~~~~~~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 13 IEKSEGISILINGEDLSYPREVSLE 37 (305)
T ss_dssp HHTCSSEEEEEECSSSSHHHHHHHH
T ss_pred HHCCCCcEEEEECCCCCCHHHHHHH
Confidence 34444 688999999999976533
No 143
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.57 E-value=0.62 Score=42.32 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=55.4
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..+++.+... +..+..++|+.........+ ....+|+|+|. .+..+ .++.
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idip 333 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG----IDVE 333 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTSS----CCCT
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccccC----CCcc
Confidence 48999999999999999888775 77888999999876654433 24678999994 34444 7788
Q ss_pred CeeEEeec
Q 020452 200 TLSFFVLD 207 (326)
Q Consensus 200 ~l~~lViD 207 (326)
++++||.-
T Consensus 334 ~~~~Vi~~ 341 (412)
T 3fht_A 334 QVSVVINF 341 (412)
T ss_dssp TEEEEEES
T ss_pred CCCEEEEE
Confidence 89998843
No 144
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.57 E-value=1.1 Score=41.83 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+++.+++|+|||.+..-
T Consensus 102 vIlivG~~G~GKTTt~~k 119 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAK 119 (443)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHH
Confidence 467899999999987644
No 145
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.51 E-value=0.12 Score=40.18 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..+.++++.||+|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 56789999999999999664
No 146
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.47 E-value=0.11 Score=47.94 Aligned_cols=54 Identities=24% Similarity=0.232 Sum_probs=35.6
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~---g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
|-.+|++.+=-+.+.+.|++. .+..|.-++..-+ ...+.+++.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi----~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI----AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC----CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCceEEeCCCCCCHHHHH
Confidence 446899998778888888763 1122222222211 23578999999999999765
No 147
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.45 E-value=0.64 Score=41.95 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=56.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++++.-+..+++.+... ++.+..++|+.........+. ....|+|+|. .+..+ .++
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----idi 316 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRG----MDI 316 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCSSC----BCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhhcC----CCc
Confidence 458999999999999998888775 778899999988765544332 4678999993 33333 778
Q ss_pred CCeeEEeecch
Q 020452 199 HTLSFFVLDEA 209 (326)
Q Consensus 199 ~~l~~lViDEa 209 (326)
.+++++|.-+.
T Consensus 317 ~~~~~Vi~~~~ 327 (391)
T 1xti_A 317 ERVNIAFNYDM 327 (391)
T ss_dssp TTEEEEEESSC
T ss_pred ccCCEEEEeCC
Confidence 88999987554
No 148
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.39 E-value=1.9 Score=42.53 Aligned_cols=94 Identities=22% Similarity=0.322 Sum_probs=66.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++|+.-+..+++.+... ++++..++|+.........+ ....+|+|||- .+..| +++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~G----lDi 511 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLREG----LDI 511 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCSTT----CCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhCC----ccc
Confidence 448999999999999888888775 78888899988766654443 24689999994 33444 778
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+++++|+-+++...-..-...+.....+..
T Consensus 512 p~v~lVi~~d~d~~G~p~s~~~~iQr~GRag 542 (661)
T 2d7d_A 512 PEVSLVAILDADKEGFLRSERSLIQTIGRAA 542 (661)
T ss_dssp TTEEEEEETTTTCCTTTTSHHHHHHHHHTTT
T ss_pred CCCCEEEEeCcccccCCCCHHHHHHHhCccc
Confidence 8999999999875432222344444444443
No 149
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=91.12 E-value=0.4 Score=42.40 Aligned_cols=70 Identities=20% Similarity=0.364 Sum_probs=52.5
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.+++++-+..+++.+... ++.+..++|+.....+...+ ....+|+|+|- .+..+ .++.
T Consensus 29 ~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~G----idi~ 95 (300)
T 3i32_A 29 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAARG----LDIP 95 (300)
T ss_dssp SSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTCS----TTCC
T ss_pred CCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhcC----cccc
Confidence 37999999999988888777654 78899999998866554433 34678999993 33333 6778
Q ss_pred CeeEEee
Q 020452 200 TLSFFVL 206 (326)
Q Consensus 200 ~l~~lVi 206 (326)
+++++|.
T Consensus 96 ~v~~VI~ 102 (300)
T 3i32_A 96 QVDLVVH 102 (300)
T ss_dssp CCSEEEE
T ss_pred ceeEEEE
Confidence 8888874
No 150
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.10 E-value=2.3 Score=40.89 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=58.6
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++|+.-+..+++.+..... .++.+..++|+.........+ ....+|||+|. .+..+ +++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~G----iDi 357 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG----MDF 357 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS----CCC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhcC----CCc
Confidence 44899999999999999999988754 267888999999876654433 34688999994 34443 777
Q ss_pred CCeeEEeecch
Q 020452 199 HTLSFFVLDEA 209 (326)
Q Consensus 199 ~~l~~lViDEa 209 (326)
.++++||.-..
T Consensus 358 p~v~~VI~~~~ 368 (579)
T 3sqw_A 358 PNVHEVLQIGV 368 (579)
T ss_dssp TTCCEEEEESC
T ss_pred ccCCEEEEcCC
Confidence 88888886554
No 151
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=90.99 E-value=0.83 Score=41.07 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=58.1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++++.-+..+++.++.. +..+..++|+.........+ ....+|+|+|. .+..+ .++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idi 309 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLARG----IDI 309 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSSS----CCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhcC----CCc
Confidence 458999999999999988888775 77888999998876654433 24678999994 34444 778
Q ss_pred CCeeEEeecchhH
Q 020452 199 HTLSFFVLDEADR 211 (326)
Q Consensus 199 ~~l~~lViDEah~ 211 (326)
.+++++|.-+...
T Consensus 310 p~~~~Vi~~~~p~ 322 (395)
T 3pey_A 310 PTVSMVVNYDLPT 322 (395)
T ss_dssp TTEEEEEESSCCB
T ss_pred ccCCEEEEcCCCC
Confidence 8899998766543
No 152
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=90.78 E-value=0.83 Score=41.40 Aligned_cols=73 Identities=8% Similarity=0.230 Sum_probs=55.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.+++++-+..+++.+... +..+..++|+.........+ .....|+|+|. .+..+ .++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G----idi 324 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLTRG----IDI 324 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSSSS----CCC
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccccC----CCc
Confidence 348999999999999999988876 77888999998876654433 24678999993 33333 778
Q ss_pred CCeeEEeecc
Q 020452 199 HTLSFFVLDE 208 (326)
Q Consensus 199 ~~l~~lViDE 208 (326)
.+++++|.-+
T Consensus 325 p~~~~Vi~~~ 334 (400)
T 1s2m_A 325 QAVNVVINFD 334 (400)
T ss_dssp TTEEEEEESS
T ss_pred cCCCEEEEeC
Confidence 8888888543
No 153
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=90.69 E-value=0.6 Score=41.56 Aligned_cols=74 Identities=16% Similarity=0.394 Sum_probs=54.7
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCccccc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
.+.++||.+++++-+..+++.++.. +..+..++|+.+.......+ ....+|+|+|. .+..+ .+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id 303 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRG----ID 303 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHH----CC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----CC
Confidence 4558999999999999998888775 77889999998876654433 24678999994 22222 56
Q ss_pred CCCeeEEeecc
Q 020452 198 LHTLSFFVLDE 208 (326)
Q Consensus 198 l~~l~~lViDE 208 (326)
+.+++++|.-+
T Consensus 304 ~~~~~~Vi~~~ 314 (367)
T 1hv8_A 304 VNDLNCVINYH 314 (367)
T ss_dssp CSCCSEEEESS
T ss_pred cccCCEEEEec
Confidence 67788887643
No 154
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.39 E-value=0.12 Score=48.24 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=35.5
Q ss_pred ccccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 020452 31 TEFDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~---g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~ 90 (326)
.+-.+|++.+--+.+.+.|.+. .+..|.-++..- +.-.+.+++.||+|||||+.+-
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g----~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG----IKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC----CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC----CCCCCeEEEECCCCCcHHHHHH
Confidence 4556799998777777777652 111222121111 1235789999999999997753
No 155
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.29 E-value=1.2 Score=37.35 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=18.0
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l 91 (326)
..|.-+.+.+|+|+|||.....
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH
Confidence 5678889999999999976543
No 156
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.18 E-value=0.17 Score=43.94 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|.-+.+.+|||||||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 57788999999999999654
No 157
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=90.13 E-value=1.2 Score=42.18 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=39.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 148 (326)
.+....+.+-||||||++..- ++... +..+|||+|+...|.|+++.++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~~-------------------------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAERH-------------------------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHHS-------------------------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHHh-------------------------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 466789999999999976432 22211 12589999999999999999999864
No 158
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.12 E-value=0.93 Score=44.08 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=54.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.|+++.-+.++++.+... ++.+..++|+.........+ ....+|||+|. .+..+ +++
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~~~G----ID~ 333 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AFGMG----IDK 333 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TSCTT----CCC
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhhcC----CCc
Confidence 458999999999999999988775 78899999999876654433 34679999993 22222 667
Q ss_pred CCeeEEeec
Q 020452 199 HTLSFFVLD 207 (326)
Q Consensus 199 ~~l~~lViD 207 (326)
.++++||.-
T Consensus 334 p~V~~VI~~ 342 (591)
T 2v1x_A 334 PDVRFVIHH 342 (591)
T ss_dssp SCEEEEEES
T ss_pred ccccEEEEe
Confidence 778887743
No 159
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=90.06 E-value=1 Score=40.92 Aligned_cols=72 Identities=18% Similarity=0.383 Sum_probs=54.9
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.|+++.-+..+++.+... ++.+..++|+....+....+ .....|+|+|. .+..+ .++.
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idi~ 343 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWARG----LDVP 343 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSSS----CCCT
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhCc----CCcc
Confidence 38999999999999988888775 77888999998876554433 34678999994 34444 7788
Q ss_pred CeeEEeecc
Q 020452 200 TLSFFVLDE 208 (326)
Q Consensus 200 ~l~~lViDE 208 (326)
+++++|.-+
T Consensus 344 ~v~~Vi~~~ 352 (410)
T 2j0s_A 344 QVSLIINYD 352 (410)
T ss_dssp TEEEEEESS
T ss_pred cCCEEEEEC
Confidence 899888533
No 160
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.75 E-value=2 Score=38.11 Aligned_cols=22 Identities=27% Similarity=-0.034 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~i 93 (326)
|.-+++.|++|+|||...+-.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHH
Confidence 4568899999999997654433
No 161
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.73 E-value=0.87 Score=42.51 Aligned_cols=21 Identities=33% Similarity=0.072 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|.-+++.|++|+|||...+-
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ 219 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALT 219 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHH
Confidence 455678899999999965433
No 162
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.90 E-value=0.18 Score=47.00 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=34.6
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~---g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~ 90 (326)
+-.+|++.+--+.+.+.|.+. .+..|.-++..- +...+.+++.||+|||||+.+-
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g----~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG----IDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC----CCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC----CCCCceEEEECCCCCCHHHHHH
Confidence 446899998777777777652 111221122111 1234679999999999997753
No 163
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.81 E-value=0.31 Score=45.30 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=36.1
Q ss_pred ccccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 31 TEFDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~---g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
.+-.+|++.+=-+.+.+.|++. .+..|.-++..-+ .-.+.+++.||+|||||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi----~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI----KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC----CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCCCceECCCCchHHHHH
Confidence 4456899998777777777652 2223333332222 23578999999999999765
No 164
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=88.74 E-value=1.7 Score=42.86 Aligned_cols=77 Identities=22% Similarity=0.345 Sum_probs=58.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++|+.-+..+.+.+... ++++..++|+.........+. ...+|+|||- .+..| +++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~~G----lDi 505 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLREG----LDI 505 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCTT----CCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhhcC----ccC
Confidence 348999999999999988888775 788888999887666554432 4678999993 23333 778
Q ss_pred CCeeEEeecchhHh
Q 020452 199 HTLSFFVLDEADRM 212 (326)
Q Consensus 199 ~~l~~lViDEah~l 212 (326)
.+++++|+=+++..
T Consensus 506 p~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 506 PEVSLVAILDADKE 519 (664)
T ss_dssp TTEEEEEETTTTSC
T ss_pred CCCCEEEEeCCccc
Confidence 88999998888754
No 165
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.66 E-value=1.6 Score=40.42 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=54.5
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 125 ~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
++||.|+++.-+..+++.+... ++.+..++|+....+....+. ....|+|+|. .+..+ .++.+
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~rG----lDi~~ 368 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASRG----LDIKN 368 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTSS----CCCTT
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhCC----CCccc
Confidence 3999999999999988888765 788999999998776554443 4678999995 34444 77888
Q ss_pred eeEEeec
Q 020452 201 LSFFVLD 207 (326)
Q Consensus 201 l~~lViD 207 (326)
+++||.-
T Consensus 369 v~~VI~~ 375 (434)
T 2db3_A 369 IKHVINY 375 (434)
T ss_dssp CCEEEES
T ss_pred CCEEEEE
Confidence 9888853
No 166
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.57 E-value=0.2 Score=44.25 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=34.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHH-HHHHHH-HhcCCcEEEEcCCCchHHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQK-ACIPAA-AHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~-~~i~~~-l~~g~dvlv~apTGsGKT~~~~ 90 (326)
+-.+|+++.-.+.+.+.+...-- .+... +.+... +..++.+++.||+|+|||..+-
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 34579999888888777765300 11100 011111 1346789999999999997653
No 167
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.41 E-value=1.3 Score=42.18 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=52.8
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++|+.-++.+++.+... ++.+..++|+.+........ ....+|+|+|. .+..+ +++
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~~~G----iD~ 302 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AFGMG----INK 302 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TSCTT----TCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhhCC----CCc
Confidence 347999999999999999888775 78899999999876554333 34689999995 22222 566
Q ss_pred CCeeEEee
Q 020452 199 HTLSFFVL 206 (326)
Q Consensus 199 ~~l~~lVi 206 (326)
.++++||.
T Consensus 303 p~v~~VI~ 310 (523)
T 1oyw_A 303 PNVRFVVH 310 (523)
T ss_dssp TTCCEEEE
T ss_pred cCccEEEE
Confidence 67777765
No 168
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.37 E-value=0.23 Score=46.67 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=36.2
Q ss_pred ccccccccCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLG---FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g---~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
.|-.+|++.+--+.+.+.|++.= +..|.-++..- +.-.+.+++.||+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G----i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG----IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT----CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC----CCCCCceEeeCCCCCcHHHHH
Confidence 34468999998888888887631 11221121111 134578999999999999765
No 169
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=88.09 E-value=0.09 Score=42.19 Aligned_cols=72 Identities=18% Similarity=0.351 Sum_probs=50.3
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..+++.++.. ++.+..++|+.........+ .....|+|+|. .+..+ .++.
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----id~~ 97 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAARG----IDIP 97 (170)
Confidence 47999999999999888887765 67888899987665443332 23567999992 23333 5566
Q ss_pred CeeEEeecc
Q 020452 200 TLSFFVLDE 208 (326)
Q Consensus 200 ~l~~lViDE 208 (326)
+++++|.-+
T Consensus 98 ~~~~Vi~~~ 106 (170)
T 2yjt_D 98 DVSHVFNFD 106 (170)
Confidence 677776543
No 170
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.80 E-value=0.52 Score=45.00 Aligned_cols=42 Identities=24% Similarity=0.098 Sum_probs=28.1
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 46 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 46 ~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+..+.+.|. +++.+..-+...+..|..+++.||||||||...
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 345556663 233344444444568899999999999999653
No 171
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.71 E-value=0.57 Score=42.51 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..+.-+++.||||||||...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35668899999999999654
No 172
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=87.43 E-value=1 Score=47.42 Aligned_cols=92 Identities=18% Similarity=0.325 Sum_probs=66.6
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.+++|++++++-+..+++.++.... +.++..++|++........+ ....+|+|||. .+..+ .++
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p--~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e~G----iDi 880 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG----IDI 880 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGGG----SCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cceee----ecc
Confidence 45899999999999999999988743 56888999999876554333 34789999995 34444 788
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+++++|+..++.. + ...+.....+..
T Consensus 881 p~v~~VIi~~~~~~---~-l~~l~Qr~GRvg 907 (1151)
T 2eyq_A 881 PTANTIIIERADHF---G-LAQLHQLRGRVG 907 (1151)
T ss_dssp TTEEEEEETTTTSS---C-HHHHHHHHTTCC
T ss_pred cCCcEEEEeCCCCC---C-HHHHHHHHhccC
Confidence 89999998877642 1 233445555444
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=87.18 E-value=0.24 Score=42.97 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=34.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHH-HHHHHHH-HhcCCcEEEEcCCCchHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAA-AHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q-~~~i~~~-l~~g~dvlv~apTGsGKT~~~ 89 (326)
-..|+++.-.+..++.+...-. .+.+ .+.+... +..+..+++.||+|+|||..+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3479999888888888866311 1111 1111111 134678999999999999765
No 174
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=87.14 E-value=0.28 Score=41.77 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=30.9
Q ss_pred cccccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLG--FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g--~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~ 90 (326)
.+|+++.-.+.+.+.++.+- +..+..+.... +...+.+++.||+|+|||..+-
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g----~~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG----AKVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC----------CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC----CCCCceEEEECCCCCCHHHHHH
Confidence 36888877777777775520 11111111110 1245679999999999997653
No 175
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.01 E-value=1.6 Score=38.58 Aligned_cols=22 Identities=23% Similarity=0.049 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l 91 (326)
..|.-+++.|++|+|||...+-
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ 87 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALK 87 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH
Confidence 3456788999999999965433
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.57 E-value=0.87 Score=37.08 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
..+++.||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 789999999999997653
No 177
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.47 E-value=0.69 Score=42.93 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=20.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLL 98 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~ 98 (326)
...++++.|+||+|||... ..++..+.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~ 78 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGL 78 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 4579999999999999874 44444443
No 178
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=86.31 E-value=1.6 Score=37.88 Aligned_cols=46 Identities=20% Similarity=0.122 Sum_probs=31.5
Q ss_pred CHHHHHHHHHCCCCCChHHHHHH-HHHHHhcC---C-cEEEEcCCCchHHHHHH
Q 020452 42 HPLLMKSIYRLGFKEPTPIQKAC-IPAAAHQG---K-DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 42 ~~~i~~~l~~~g~~~p~~~Q~~~-i~~~l~~g---~-dvlv~apTGsGKT~~~~ 90 (326)
...|.+.|+..|+. +++-.. +..++... + .+++.||.|+|||+.+.
T Consensus 72 ~n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34788888888883 555333 34444322 2 48999999999998765
No 179
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.25 E-value=0.64 Score=51.33 Aligned_cols=25 Identities=24% Similarity=0.050 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
.++.+++.+|+|+|||..+...+.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999877554443
No 180
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.89 E-value=1.5 Score=36.59 Aligned_cols=52 Identities=6% Similarity=0.028 Sum_probs=32.1
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHHHHHHHH
Q 020452 42 HPLLMKSIYRLGFKEPTPIQKACIPAAAHQ---GKDIIGAAETGSGKTLAFGLPIMQR 96 (326)
Q Consensus 42 ~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~---g~dvlv~apTGsGKT~~~~l~il~~ 96 (326)
...|.+.|+-.|+ .+... ...+..++.. ...+++.+|.|+|||..+ ..++..
T Consensus 27 w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 27 WRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp SHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 3567777776665 44444 4445555432 125899999999999665 444443
No 181
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.65 E-value=0.56 Score=40.20 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..+.++++.||+|+|||..+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 46789999999999999665
No 182
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.31 E-value=0.62 Score=43.27 Aligned_cols=19 Identities=32% Similarity=0.379 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|.-+++.+|||||||...
T Consensus 166 ~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred cCCeEEEECCCCCCHHHHH
Confidence 4556889999999999653
No 183
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=84.87 E-value=0.44 Score=37.89 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
+..+++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 468999999999999765
No 184
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.78 E-value=0.76 Score=41.31 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=28.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~ 90 (326)
...|+++--.+...+.+... ...+..-...++.+++.||+|+|||..+-
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l---------~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVV---------LEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEESCHHHHHHHHHH---------HHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccChHHHHHHHHHH---------HHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 33466666666665554321 11111110123579999999999997653
No 185
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=84.51 E-value=1.8 Score=38.50 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=33.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----hcCCcEEEEcCCCchHHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA----HQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l----~~g~dvlv~apTGsGKT~~~~ 90 (326)
-.+|++++-.+.+.+.|++.=. .|.+. |.++ ...+.+++.||+|+|||..+-
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~~---~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIKF---PHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHHC---GGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHhC---HHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 3589999888888888865200 01100 1111 123679999999999997653
No 186
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=84.46 E-value=1.3 Score=41.20 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=42.4
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTP 181 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp 181 (326)
+.++||++|+++-++.+++.++.. +.++..++|+..............+|+|+|-
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 347999999999999999888876 7789999987433333334456789999994
No 187
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=84.30 E-value=0.8 Score=40.53 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~ 90 (326)
+.++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5799999999999997654
No 188
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=84.10 E-value=2 Score=39.38 Aligned_cols=75 Identities=20% Similarity=0.368 Sum_probs=51.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEc--------CCCHHHHHHH----HhcCCCEEEeCcHHHHHHHhc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG--------GMSTEKQERL----LKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g--------~~~~~~~~~~----~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
+.++||.++++.-+..+++.+... ++.+..++| +....++... ......|+|+|. .+..
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~~~ 431 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGEE 431 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGGG
T ss_pred CCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cccc
Confidence 558999999999999988888775 788889998 5543333222 234678999993 2333
Q ss_pred CCcccccCCCeeEEeecchh
Q 020452 191 GEKHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah 210 (326)
| .++..+++||+-+..
T Consensus 432 G----ldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 432 G----LDVPEVDLVVFYEPV 447 (494)
T ss_dssp G----GGSTTCCEEEESSCC
T ss_pred C----CCchhCCEEEEeCCC
Confidence 3 678888888866554
No 189
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.06 E-value=0.35 Score=41.27 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=31.4
Q ss_pred ccccccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLG--FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g--~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
-..|+++.-.+.+.+.+...- +..+..++... ....+.+++.||+|+|||..+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG----GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC---------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC----CCCCCeEEEECcCCCCHHHHH
Confidence 357999988888877775520 00111000000 112457999999999999765
No 190
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.02 E-value=0.91 Score=42.50 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=31.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l 91 (326)
-..|+++.-.+.+.+.+... ...+..-...++++++.||+|+|||..+..
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~---------~~~~~~~~~~~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVI---------VELIKSKKMAGRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp CSEETTEESCHHHHHHHHHH---------HHHHHTTCCTTCEEEEECCTTSSHHHHHHH
T ss_pred hhchhhccCHHHHHHHHHHH---------HHHHHhCCCCCCeEEEECCCcCCHHHHHHH
Confidence 34578887777777666431 011111111346899999999999977643
No 191
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.90 E-value=2.7 Score=37.68 Aligned_cols=19 Identities=21% Similarity=-0.048 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
.-+++.||+|+|||...+-
T Consensus 123 ~i~~I~G~~GsGKTtla~~ 141 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHT 141 (343)
T ss_dssp EEEEEECCTTCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578899999999976543
No 192
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=83.89 E-value=0.9 Score=40.30 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..+.++++.||+|+|||..+
T Consensus 44 ~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 44 CTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHTCCEEEESCCCHHHHHHH
T ss_pred HcCCeEEEECCCCCcHHHHH
Confidence 47899999999999999665
No 193
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.84 E-value=0.57 Score=37.15 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~ 90 (326)
..++++.||+|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 5689999999999997653
No 194
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=83.58 E-value=1.6 Score=39.27 Aligned_cols=19 Identities=42% Similarity=0.455 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+.++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3568999999999999765
No 195
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=83.06 E-value=1.2 Score=41.48 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=47.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCee
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~ 202 (326)
+.++||+||+++-+..+++.++.. ++++..++|+..............+|+|+|. .+..+ .++. ++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e~G----iDip-v~ 242 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAEMG----ANLC-VE 242 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STTCC----TTCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhhee----eccC-ce
Confidence 348999999999999999888875 7789999986544333444455789999994 33433 6677 77
Q ss_pred EEe
Q 020452 203 FFV 205 (326)
Q Consensus 203 ~lV 205 (326)
+||
T Consensus 243 ~VI 245 (440)
T 1yks_A 243 RVL 245 (440)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 196
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=82.81 E-value=0.55 Score=39.97 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=32.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHH-HhcCCcEEEEcCCCchHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA-AHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~-l~~g~dvlv~apTGsGKT~~~ 89 (326)
+-.+|+++.-.+.+...++..-.. . -...++..+ +.-.+.+++.+|+|+|||...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 345799998888877777653110 0 001222221 011345999999999999654
No 197
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=82.64 E-value=1.4 Score=46.49 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=43.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 148 (326)
...+|.|..|||||.+..--++..+..... +. ........-++|+|+=|++-+.++.+++...+.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~-------~~----~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGG-------SA----AFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSS-------SS----SCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCc-------cc----ccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 345999999999999887777776642100 00 000011234799999999999999988887643
No 198
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=82.57 E-value=5.8 Score=34.91 Aligned_cols=22 Identities=27% Similarity=0.049 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~i 93 (326)
|.-+++.+++|+|||...+-.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3467899999999997654433
No 199
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=82.31 E-value=0.57 Score=40.99 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~ 90 (326)
+.++++.||+|+|||..+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3479999999999997653
No 200
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=82.17 E-value=1 Score=39.12 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.+.++++.||+|+|||..+-
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 36789999999999997653
No 201
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=82.12 E-value=0.35 Score=42.09 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=29.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHH-HHHHHH-HhcCCcEEEEcCCCchHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQK-ACIPAA-AHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~-~~i~~~-l~~g~dvlv~apTGsGKT~~~ 89 (326)
-.+|++++-.+.+.+.|++.= ..|+.. .++..+ +.-.+.+++.||+|+|||..+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 357999988888888886531 122221 222221 112344999999999999665
No 202
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=81.76 E-value=2.1 Score=40.60 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
...=..++..+ ..+.++++.||+|+|||..+
T Consensus 28 ~~~i~~l~~al-~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 28 SHAIRLCLLAA-LSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHH-HHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHH-hcCCeeEeecCchHHHHHHH
Confidence 33334444444 57899999999999999765
No 203
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=81.45 E-value=1.5 Score=36.31 Aligned_cols=32 Identities=31% Similarity=0.298 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 57 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 57 p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
-+.-|..++..+ ..|.-+.+.+|+|+|||...
T Consensus 8 k~~g~~~~l~~i-~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAI-DTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHH-HHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhc-cCCCEEEEECCCCCCHHHHH
Confidence 344567778777 68888999999999999654
No 204
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=81.35 E-value=0.94 Score=39.96 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..+.++++.|++|+|||..+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45779999999999999765
No 205
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.28 E-value=1.6 Score=41.47 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=15.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
+.+++.||+|+|||..+.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 689999999999997653
No 206
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=81.28 E-value=1.5 Score=39.91 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~i 93 (326)
.+.++++.|+||+|||...-..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~ 56 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLL 56 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHH
Confidence 56799999999999997654433
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.62 E-value=0.73 Score=40.11 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=33.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHH-HHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q-~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+-.+|+++.-.+.+.+.+...=. .+.. .+.+..+-..++.+++.||+|+|||..+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 34578888888888877765310 0000 0000011123578999999999999765
No 208
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=80.60 E-value=2.9 Score=37.63 Aligned_cols=20 Identities=35% Similarity=0.318 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
..+.+++.||+|+|||..+-
T Consensus 116 ~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35689999999999997653
No 209
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=80.55 E-value=1.3 Score=40.22 Aligned_cols=22 Identities=45% Similarity=0.518 Sum_probs=18.5
Q ss_pred HHhcCCcEEEEcCCCchHHHHH
Q 020452 68 AAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 68 ~l~~g~dvlv~apTGsGKT~~~ 89 (326)
.+..|..+++.||||||||...
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHHH
Confidence 3468999999999999999654
No 210
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=80.39 E-value=1.7 Score=42.85 Aligned_cols=69 Identities=10% Similarity=0.147 Sum_probs=47.1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCee
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~ 202 (326)
+.++||+||+++-++.+++.++.. ++++..++|...............+|||+|- .+..+ +++. ++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd-----v~e~G----IDip-v~ 475 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISEMG----ANFG-AS 475 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG-----GGGTT----CCCC-CS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc-----hhhcc----eeeC-Cc
Confidence 458999999999999888877664 7889999985322222222234679999994 33443 5566 66
Q ss_pred EEe
Q 020452 203 FFV 205 (326)
Q Consensus 203 ~lV 205 (326)
+||
T Consensus 476 ~VI 478 (673)
T 2wv9_A 476 RVI 478 (673)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 211
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=80.37 E-value=1.8 Score=40.35 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=47.7
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeE
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~ 203 (326)
.++||.+|++.-++++++.++.. ++.+..++|+..............+|||+|- .+..+ .++.+ ++
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~~G----iDip~-~~ 254 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEMG----ANFRA-GR 254 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGGSS----CCCCC-SE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHHhC----cCCCC-CE
Confidence 37999999999999888887664 7788888887653322222334679999994 34444 56666 55
Q ss_pred Ee
Q 020452 204 FV 205 (326)
Q Consensus 204 lV 205 (326)
||
T Consensus 255 VI 256 (451)
T 2jlq_A 255 VI 256 (451)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 212
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=80.02 E-value=1.2 Score=35.79 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|+-+++.||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999654
No 213
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=79.79 E-value=2.5 Score=35.22 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|.-+++.|++|+|||...+-
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~ 49 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHH
Confidence 466789999999999965543
No 214
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=79.55 E-value=1.6 Score=38.29 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=27.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~~ 90 (326)
+|+++--.+..+..+... +..+. .....+++.||+|+|||..+-
T Consensus 10 ~~~~~ig~~~~~~~l~~~------------l~~~~~~~~~~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVY------------LEAAKARKEPLEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp STTTCCSCHHHHHHHHHH------------HHHHHHHCSCCCCCEEECCTTCCCHHHHH
T ss_pred cHHHhhCHHHHHHHHHHH------------HHHHHccCCCCCcEEEECCCCCCHHHHHH
Confidence 566666666666655431 11111 134789999999999997653
No 215
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=79.34 E-value=1.5 Score=39.33 Aligned_cols=22 Identities=27% Similarity=0.222 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l 91 (326)
..|.-+++.|++|+|||..++-
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ 65 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMN 65 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH
Confidence 3556678899999999965543
No 216
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=79.34 E-value=1.2 Score=36.43 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999654
No 217
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=79.33 E-value=4 Score=35.59 Aligned_cols=71 Identities=11% Similarity=0.248 Sum_probs=50.2
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCccccc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
.+.++||.+++++-+..+++.+. .+..++|+.........+. ...+|+|+|. .+..+ .+
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id 281 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VASRG----LD 281 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHHTT----CC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccccC----CC
Confidence 45579999999998877665543 4667888888766544332 4678999994 44444 67
Q ss_pred CCCeeEEeecch
Q 020452 198 LHTLSFFVLDEA 209 (326)
Q Consensus 198 l~~l~~lViDEa 209 (326)
+.+++++|.-..
T Consensus 282 ~~~~~~Vi~~~~ 293 (337)
T 2z0m_A 282 IPLVEKVINFDA 293 (337)
T ss_dssp CCCBSEEEESSC
T ss_pred ccCCCEEEEecC
Confidence 788888886443
No 218
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=79.29 E-value=7 Score=36.65 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=49.6
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 125 ~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
+.++++....-+..+++.+.. .+.++..++|++........+ ....+|+|+|+..+ ..| .++.+
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~----~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~----~~G----iDip~ 416 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKN----EYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF----STG----ISVKN 416 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHT----TCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH----HHS----CCCCS
T ss_pred CeEEEEecHHHHHHHHHHHHH----cCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh----hcc----ccccc
Confidence 445555556555555555544 355888999998866543322 34678999997665 333 66788
Q ss_pred eeEEeecchh
Q 020452 201 LSFFVLDEAD 210 (326)
Q Consensus 201 l~~lViDEah 210 (326)
++++|+..+.
T Consensus 417 v~~vi~~~~~ 426 (510)
T 2oca_A 417 LHHVVLAHGV 426 (510)
T ss_dssp EEEEEESSCC
T ss_pred CcEEEEeCCC
Confidence 9999998877
No 219
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=78.99 E-value=2.6 Score=36.64 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=27.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g--~dvlv~apTGsGKT~~~~ 90 (326)
+|+++--++.+++.+... +..+ .++++.||+|+|||....
T Consensus 15 ~~~~~~g~~~~~~~l~~~----------------l~~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGY----------------VERKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp SGGGSCSCHHHHHHHHTT----------------TTTTCCCCEEEESSSSSSHHHHHH
T ss_pred CHHHHhCCHHHHHHHHHH----------------HhCCCCCeEEEECcCCcCHHHHHH
Confidence 566666677777766653 1122 369999999999997653
No 220
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=78.82 E-value=2.1 Score=49.43 Aligned_cols=50 Identities=10% Similarity=0.140 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHCCCCCChHHH-HHHHH--HHHhcCCcEEEEcCCCchHHHHHHH
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQ-KACIP--AAAHQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q-~~~i~--~~l~~g~dvlv~apTGsGKT~~~~l 91 (326)
|.+.|.+.++++|+ .|.+.+ .+++. .++...+.+++.||||||||.++-.
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 44667777788999 455544 44432 2335678899999999999988743
No 221
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=78.71 E-value=1.3 Score=36.05 Aligned_cols=21 Identities=24% Similarity=0.083 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~ 90 (326)
..++.+++.|++|||||...-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 467789999999999997653
No 222
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=78.31 E-value=3.5 Score=42.76 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=47.4
Q ss_pred CccccccceeeecCCCCcchhhccCcccccccccccccCCCCHHHHHHHHHCCCC----CChHHHHHHHHHHHhc--CCc
Q 020452 1 MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFK----EPTPIQKACIPAAAHQ--GKD 74 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~----~p~~~Q~~~i~~~l~~--g~d 74 (326)
+++|-+|+.+++.|+...... - ..+..++..+..... +...+=..|+..++.. .+.
T Consensus 85 ~IYTy~G~iLIaVNPyk~lp~-------------i-----Y~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQs 146 (1052)
T 4anj_A 85 RIYTYVANILIAVNPYFDIPK-------------I-----YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQS 146 (1052)
T ss_dssp CCEEEETTEEEEECCSSCCTT-------------T-----TSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEE
T ss_pred CcEEeECCEEEEECCCCCccc-------------c-----CCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCce
Confidence 478888998888887653200 0 134455444432222 2234445566666544 457
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~ 97 (326)
+|+.|.+|+|||.+.-. +++.+
T Consensus 147 IiiSGESGAGKTestK~-im~yL 168 (1052)
T 4anj_A 147 IIVSGESGAGKTENTKF-VLRYL 168 (1052)
T ss_dssp EEEECSTTSSHHHHHHH-HHHHH
T ss_pred EEEecCCCCCHHHHHHH-HHHHH
Confidence 99999999999998744 44444
No 223
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=78.12 E-value=1.4 Score=39.50 Aligned_cols=20 Identities=45% Similarity=0.544 Sum_probs=17.5
Q ss_pred HhcCCcEEEEcCCCchHHHH
Q 020452 69 AHQGKDIIGAAETGSGKTLA 88 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~ 88 (326)
+..|..+.+.+|||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 46789999999999999964
No 224
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=78.07 E-value=5.7 Score=39.85 Aligned_cols=75 Identities=12% Similarity=0.222 Sum_probs=55.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHH-------cCCCcEEEEEEcCCCHHHHHHHHhc---------CCCEEEeCcHHHHH
Q 020452 123 HLRALIITPTRELALQVTDHLKEVA-------KGINVRVVPIVGGMSTEKQERLLKA---------RPELVVGTPGRLWE 186 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~-------~~~~~~v~~~~g~~~~~~~~~~~~~---------~~~IlV~Tp~~l~~ 186 (326)
+.++||.+|++.-+..+++.+.... ...++.+..++|+....++...+.. ...|||+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 4489999999999999999888633 2247889999999998777654432 357999994
Q ss_pred HHhcCCcccccCCCeeEEee
Q 020452 187 LMSGGEKHLVELHTLSFFVL 206 (326)
Q Consensus 187 ll~~~~~~~~~l~~l~~lVi 206 (326)
.+..+ +++.++++||-
T Consensus 378 iae~G----idIp~v~~VId 393 (773)
T 2xau_A 378 IAETS----LTIDGIVYVVD 393 (773)
T ss_dssp HHHHT----CCCTTEEEEEE
T ss_pred HHHhC----cCcCCeEEEEe
Confidence 22333 66778877663
No 225
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=77.74 E-value=1.4 Score=36.24 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|.-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667888999999999764
No 226
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=77.69 E-value=1.1 Score=35.80 Aligned_cols=20 Identities=25% Similarity=0.081 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l 91 (326)
++.+++.|++|||||...-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56789999999999976543
No 227
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=77.54 E-value=1.6 Score=36.38 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=17.6
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l 91 (326)
..|.-+++.||+|+|||...+-
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~ 42 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQ 42 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 4567889999999999976543
No 228
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=77.38 E-value=1.4 Score=38.05 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=33.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHH-HhcCCcEEEEcCCCchHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA-AHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~-l~~g~dvlv~apTGsGKT~~~ 89 (326)
+-.+|+++.-.+.+...++..-.. . -...++..+ +.-.+.+++.+|+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 456799998888888777653210 0 001222221 011345999999999999664
No 229
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=77.26 E-value=1.2 Score=36.84 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|+-+++.+|||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3566899999999998655
No 230
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=77.17 E-value=1.3 Score=39.80 Aligned_cols=19 Identities=26% Similarity=0.137 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
+-+++.||||+|||.....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4688999999999976643
No 231
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=77.11 E-value=1.2 Score=40.37 Aligned_cols=19 Identities=42% Similarity=0.464 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~ 90 (326)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 5689999999999997653
No 232
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=77.02 E-value=1.2 Score=35.25 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
++-+++.|++|||||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999765
No 233
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=76.61 E-value=1.4 Score=39.21 Aligned_cols=19 Identities=26% Similarity=0.118 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
.-+++.||||+|||..+..
T Consensus 4 ~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHH
Confidence 3467899999999976533
No 234
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=76.39 E-value=1.4 Score=41.80 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=30.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHH-HHHHHHH-HhcCCcEEEEcCCCchHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAA-AHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q-~~~i~~~-l~~g~dvlv~apTGsGKT~~~ 89 (326)
..|+++.-....++.+.++=. .+.. .+.+..+ ......+++.||+|+|||..+
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~---~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVE---LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 368888666666666655210 1111 1112111 134568999999999999765
No 235
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.26 E-value=1.1 Score=39.35 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
..+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56889999999999765
No 236
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=76.22 E-value=2 Score=39.00 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=17.4
Q ss_pred HHhcCCc--EEEEcCCCchHHHHHH
Q 020452 68 AAHQGKD--IIGAAETGSGKTLAFG 90 (326)
Q Consensus 68 ~l~~g~d--vlv~apTGsGKT~~~~ 90 (326)
++.+|.+ ++..|.||||||++..
T Consensus 79 ~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 79 LYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred hccCCceeEEEeeCCCCCCCCEEEe
Confidence 3335776 5778999999998763
No 237
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=75.94 E-value=1.5 Score=38.92 Aligned_cols=18 Identities=33% Similarity=0.097 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+++.||||+|||..+.-
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 467899999999976533
No 238
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=75.83 E-value=1.2 Score=34.73 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
-+++.|++|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999997653
No 239
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=75.80 E-value=1.3 Score=35.94 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|.-+.+.||+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46778899999999999654
No 240
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=75.63 E-value=5.9 Score=36.36 Aligned_cols=27 Identities=7% Similarity=0.031 Sum_probs=23.0
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCC
Q 020452 30 STEFDAWNELRLHPLLMKSIYRLGFKE 56 (326)
Q Consensus 30 ~~~~~~f~~l~l~~~i~~~l~~~g~~~ 56 (326)
+.++......|+.+..++.|++.||..
T Consensus 80 ~~~~~~l~~~gi~~~~~~~L~~ag~~t 106 (400)
T 3lda_A 80 FVPIEKLQVNGITMADVKKLRESGLHT 106 (400)
T ss_dssp SCBGGGGCCTTCCHHHHHHHHHTTCCB
T ss_pred ccCHHHHHhCCCCHHHHHHHHHcCCCc
Confidence 467778888899999999999988864
No 241
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=75.38 E-value=1.5 Score=34.86 Aligned_cols=20 Identities=25% Similarity=0.139 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.+..+++.|++|+|||...-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 56789999999999997653
No 242
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=75.31 E-value=1.4 Score=35.86 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
+-++++||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45899999999999653
No 243
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=75.17 E-value=1.7 Score=39.11 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=30.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----hcCCcEEEEcCCCchHHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA----HQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l----~~g~dvlv~apTGsGKT~~~~ 90 (326)
-.+|+++.-.+.+.+.|...=. .|.. .|.++ ...+.+++.||+|+|||..+-
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~---~~~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTH---HHHH---CGGGGCSSCCCCCCEEEECSTTSCHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCceEEEECCCCCcHHHHHH
Confidence 4568888766666666654200 0000 01111 124579999999999997753
No 244
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=74.80 E-value=1.6 Score=34.37 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+..+.+.|++|||||...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCCEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567899999999999764
No 245
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=74.78 E-value=1.1 Score=35.90 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|.-+++.||+|||||...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45777899999999999654
No 246
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=74.63 E-value=1.6 Score=35.66 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|+-++++||+|+|||...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 46788999999999999654
No 247
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=74.49 E-value=2.1 Score=35.27 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|+-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5778899999999999654
No 248
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=74.42 E-value=1.4 Score=39.20 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
...++++.||+|+|||..+
T Consensus 44 ~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 4567999999999999765
No 249
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=74.40 E-value=5 Score=38.13 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=20.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.+.++++.++||||||.+.-..+...+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999977544444433
No 250
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=74.37 E-value=2.1 Score=48.83 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 63 ACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 63 ~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
..+..++..++.++++||||+|||..+
T Consensus 1258 ~ll~~~l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1258 KIFYDLLNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHHHHHHTCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCCHHHHH
Confidence 344555678999999999999999765
No 251
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=74.10 E-value=1.2 Score=43.98 Aligned_cols=75 Identities=19% Similarity=0.414 Sum_probs=49.2
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHH--HcCCCcEEEEEEcC--------CCHHHHHHHHh----cCCCEEEeCcHHHHHHH
Q 020452 123 HLRALIITPTRELALQVTDHLKEV--AKGINVRVVPIVGG--------MSTEKQERLLK----ARPELVVGTPGRLWELM 188 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~--~~~~~~~v~~~~g~--------~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll 188 (326)
+.++||.++++..+..+++.+... +...|+++..++|+ .+...+...+. ...+|||+|- .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 558999999999999999888764 22236788899998 77666554443 3568999994 23
Q ss_pred hcCCcccccCCCeeEEee
Q 020452 189 SGGEKHLVELHTLSFFVL 206 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lVi 206 (326)
..| +++.++++||.
T Consensus 475 ~~G----IDip~v~~VI~ 488 (699)
T 4gl2_A 475 EEG----LDIKECNIVIR 488 (699)
T ss_dssp CTT----SCCCSCCCCEE
T ss_pred ccC----CccccCCEEEE
Confidence 333 66777777763
No 252
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=74.06 E-value=1.4 Score=38.48 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 479999999999997653
No 253
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=74.01 E-value=0.65 Score=43.53 Aligned_cols=70 Identities=20% Similarity=0.358 Sum_probs=0.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
..++||.|+++.-+..+++.+... +..+..++|+.........+ ....+|||||. .+..+ .++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~~G----lDi 399 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG----IDV 399 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccccC----Ccc
Confidence 457999999999998888887765 67888899987765443332 23578999993 33333 667
Q ss_pred CCeeEEe
Q 020452 199 HTLSFFV 205 (326)
Q Consensus 199 ~~l~~lV 205 (326)
.++++||
T Consensus 400 p~v~~VI 406 (479)
T 3fmp_B 400 EQVSVVI 406 (479)
T ss_dssp -------
T ss_pred ccCCEEE
Confidence 7788776
No 254
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=74.00 E-value=1.8 Score=36.90 Aligned_cols=16 Identities=31% Similarity=-0.051 Sum_probs=13.5
Q ss_pred EEEEcCCCchHHHHHH
Q 020452 75 IIGAAETGSGKTLAFG 90 (326)
Q Consensus 75 vlv~apTGsGKT~~~~ 90 (326)
+++.||+|||||..+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6789999999997653
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=73.86 E-value=3.6 Score=33.73 Aligned_cols=22 Identities=36% Similarity=0.241 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l 91 (326)
..|.-+++.+|+|+|||.....
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHH
Confidence 3567789999999999965433
No 256
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=73.62 E-value=1.7 Score=34.96 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+..+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999765
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=73.62 E-value=2.2 Score=34.56 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|.-+.+.||+|+|||...
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHH
Confidence 35777889999999999654
No 258
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=73.54 E-value=1.6 Score=39.68 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=16.8
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|..+++.||||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 46778999999999999654
No 259
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.52 E-value=4 Score=36.22 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=16.7
Q ss_pred hcCC--cEEEEcCCCchHHHHHHH
Q 020452 70 HQGK--DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 70 ~~g~--dvlv~apTGsGKT~~~~l 91 (326)
..|+ ++++.||+|+|||.....
T Consensus 42 ~~g~~~~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 42 DEGKLPHLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp HTTCCCCEEEECSSSSSHHHHHHH
T ss_pred hcCCCceEEEECCCCCCHHHHHHH
Confidence 4454 489999999999976543
No 260
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=73.47 E-value=1.5 Score=39.98 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
.+.+++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999765
No 261
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=73.43 E-value=0.79 Score=39.23 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=29.5
Q ss_pred cccccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLG--FKEPTPIQKACIPAA-AHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g--~~~p~~~Q~~~i~~~-l~~g~dvlv~apTGsGKT~~~~ 90 (326)
..|+++.-.+.+.+.+...- +.. ...+..+ ....+.+++.||+|+|||..+-
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKY-----PERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHC-----HHHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHC-----hHHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 46777766666666665420 000 1111111 1124579999999999997653
No 262
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=73.27 E-value=4.7 Score=46.04 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHCCCCCChHHH-HHHHH--HHHhcCCcEEEEcCCCchHHHHHHH
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQ-KACIP--AAAHQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q-~~~i~--~~l~~g~dvlv~apTGsGKT~~~~l 91 (326)
+...+.+.+.+.|+ .+.+.+ .+++. ..+...+.+++.||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 34567777888888 455554 33331 2234678999999999999988643
No 263
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=73.06 E-value=1.6 Score=41.17 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=31.5
Q ss_pred ccccccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHH-HhcCCcEEEEcCCCchHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLG--FKEPTPIQKACIPAA-AHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g--~~~p~~~Q~~~i~~~-l~~g~dvlv~apTGsGKT~~~ 89 (326)
-.+|+++.-.+...+.++..- +..|.. +..+ ..-.+.+++.+|+|+|||..+
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~-----~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSK-----FNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHH-----HHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHH-----HhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 347888877777776675520 111111 1111 012357999999999999765
No 264
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=72.99 E-value=1.5 Score=34.90 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.|.-+.+.||+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 56667899999999997664
No 265
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=72.76 E-value=2.4 Score=35.16 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|.-+.+.||+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 57888999999999999654
No 266
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=72.67 E-value=1.8 Score=36.14 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|.-+++.||+|+|||...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 56788899999999999654
No 267
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=72.64 E-value=3.1 Score=37.00 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=15.9
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
..+++.||+|+|||..+-+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 6799999999999976533
No 268
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=72.31 E-value=2.7 Score=38.02 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=17.5
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q 020452 65 IPAAAHQGKD--IIGAAETGSGKTLAF 89 (326)
Q Consensus 65 i~~~l~~g~d--vlv~apTGsGKT~~~ 89 (326)
+..++ +|.| ++.-|.||||||++.
T Consensus 97 v~~~l-~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQAL-DGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHh-CCCCEEEEEeCCCCCCccEEe
Confidence 33444 6776 466789999999876
No 269
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=72.29 E-value=1.9 Score=35.10 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|.-+++.||+|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678899999999999664
No 270
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=72.24 E-value=1.7 Score=34.24 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-+++.|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4688999999999765
No 271
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=72.10 E-value=5 Score=39.11 Aligned_cols=68 Identities=12% Similarity=0.157 Sum_probs=48.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCee
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~ 202 (326)
+.++||.++++.-+..+++.++.. ++++..++|+..............+|||+|. .+..+ +++. ++
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~rG----iDi~-v~ 420 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEMG----ANFR-AG 420 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGTT----CCCC-CS
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHcC----cccC-ce
Confidence 347999999999999999888875 7788889986433333333445789999995 34443 4553 66
Q ss_pred EE
Q 020452 203 FF 204 (326)
Q Consensus 203 ~l 204 (326)
+|
T Consensus 421 ~V 422 (618)
T 2whx_A 421 RV 422 (618)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 272
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=72.08 E-value=7.3 Score=36.57 Aligned_cols=77 Identities=16% Similarity=0.320 Sum_probs=46.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEc--------CCCHHHHHHH---Hh--cCCCEEEeCcHHHHHHHh
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG--------GMSTEKQERL---LK--ARPELVVGTPGRLWELMS 189 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g--------~~~~~~~~~~---~~--~~~~IlV~Tp~~l~~ll~ 189 (326)
+.++||.++++.-+..+++.+.......++++..++| +.+..++... +. ...+|+|||- .+.
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~ 463 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VAD 463 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-----CTT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hhh
Confidence 3589999999999999999998764333345555544 4443333222 22 3578999994 333
Q ss_pred cCCcccccCCCeeEEeecc
Q 020452 190 GGEKHLVELHTLSFFVLDE 208 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDE 208 (326)
.| .++.++++||.=+
T Consensus 464 ~G----lDlp~v~~VI~~d 478 (555)
T 3tbk_A 464 EG----IDIAECNLVILYE 478 (555)
T ss_dssp CC----EETTSCSEEEEES
T ss_pred cC----CccccCCEEEEeC
Confidence 33 7788898888643
No 273
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=71.86 E-value=2.6 Score=33.81 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=13.8
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44678999999999654
No 274
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=71.82 E-value=12 Score=36.96 Aligned_cols=73 Identities=12% Similarity=0.200 Sum_probs=53.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHH---HHHHHh---cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 126 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEK---QERLLK---ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 126 ~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~---~~~~~~---~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.+++++++.-+.++++.+... ++.+..++|+..... ....+. ...+|+|+|- .+..+ .++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~G----lDi- 388 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGMG----LNL- 388 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGSS----CCC-
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHCC----cCc-
Confidence 366689998888888888764 778999999998773 334444 3479999995 33443 677
Q ss_pred CeeEEeecchhHh
Q 020452 200 TLSFFVLDEADRM 212 (326)
Q Consensus 200 ~l~~lViDEah~l 212 (326)
++++||.-.+.+.
T Consensus 389 ~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 389 SIRRIIFYSLIKP 401 (677)
T ss_dssp CBSEEEESCSBC-
T ss_pred CccEEEECCcccc
Confidence 7999998877654
No 275
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=71.70 E-value=2 Score=43.25 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=35.7
Q ss_pred ccccccccCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLG---FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g---~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
.+-.+|++++.-+.+.+.|++.= ...|..++..- +...+.+++.+|+|+|||+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g----~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG----MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC----CCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC----CCCCceEEEecCCCCCchHHH
Confidence 34467999999999998887631 11221111110 123457999999999999765
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=71.64 E-value=1.8 Score=33.84 Aligned_cols=16 Identities=19% Similarity=-0.128 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999765
No 277
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=71.15 E-value=1.7 Score=34.33 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|..+++.|+.|||||...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3557889999999999765
No 278
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=70.96 E-value=2.3 Score=37.90 Aligned_cols=17 Identities=29% Similarity=0.100 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
.+++.||||+|||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999997653
No 279
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=70.72 E-value=2.1 Score=34.08 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
+.-+++.|+.|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999754
No 280
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=70.69 E-value=16 Score=33.73 Aligned_cols=18 Identities=28% Similarity=0.097 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+.+.+++|+|||.....
T Consensus 100 vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 466789999999976543
No 281
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=70.22 E-value=3.5 Score=36.75 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=16.0
Q ss_pred cCCc--EEEEcCCCchHHHHHH
Q 020452 71 QGKD--IIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~d--vlv~apTGsGKT~~~~ 90 (326)
+|.| ++.-|+||||||.+..
T Consensus 75 ~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 75 EGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp TTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCeEEEEEECCCCCCCceEec
Confidence 6776 4668999999998863
No 282
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=70.21 E-value=3.2 Score=37.36 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=15.3
Q ss_pred cCCcE--EEEcCCCchHHHHH
Q 020452 71 QGKDI--IGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dv--lv~apTGsGKT~~~ 89 (326)
+|.|. +..|+||||||.+.
T Consensus 92 ~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 92 EGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HTCCEEEEEESSTTSSHHHHH
T ss_pred CCCceEEEEecCCCCCCCeEE
Confidence 67764 66899999999875
No 283
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=70.18 E-value=7.2 Score=40.31 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=43.8
Q ss_pred CccccccceeeecCCCCcchhhccCcccccccccccccCC-CCHHHHHHHHHCCCCC--C--hHHHHHHHHHHHhc--CC
Q 020452 1 MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELR-LHPLLMKSIYRLGFKE--P--TPIQKACIPAAAHQ--GK 73 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~-l~~~i~~~l~~~g~~~--p--~~~Q~~~i~~~l~~--g~ 73 (326)
+++|-+|+.++..|+.... + ..+.++.......... | ..+=..|+..++.. .+
T Consensus 114 ~iYTy~G~ilvavNPyk~l--------------------~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~Q 173 (1010)
T 1g8x_A 114 LIYTYSGLFLVAVNPFKRI--------------------PIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQ 173 (1010)
T ss_dssp CCEEEETTEEEEECCSSCC--------------------SCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCE
T ss_pred CceeccCceeEEecCCccc--------------------cCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCe
Confidence 4678888888888776532 1 1344444443332222 2 23444566555443 45
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
.+|+.|.+|+|||.+.-.
T Consensus 174 sIiisGESGAGKTe~~K~ 191 (1010)
T 1g8x_A 174 SLLITGESGAGKTENTKK 191 (1010)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEeCCCCCCcchHHHH
Confidence 799999999999998644
No 284
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=70.00 E-value=3 Score=34.24 Aligned_cols=18 Identities=33% Similarity=0.287 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-.++.|+.|||||..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 468899999999986533
No 285
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=69.72 E-value=3 Score=33.36 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=16.8
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..+.-+++.|+.|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45678899999999999765
No 286
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=69.50 E-value=7.5 Score=37.42 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..++++.+.||||||.+.-..++..+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999977655455444
No 287
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=69.42 E-value=2.6 Score=39.22 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=33.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHH-HHHHHHhcCCcEEEEcCCCchHHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKA-CIPAAAHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~-~i~~~l~~g~dvlv~apTGsGKT~~~~ 90 (326)
+-.+|+++.-.+.+.+.|...-. .|.... .+.......+.+++.||+|+|||..+-
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 34578998877787777765210 011000 000111234789999999999997653
No 288
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=69.36 E-value=3.1 Score=34.04 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|.-+.+.+|+|+|||...
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 57888899999999999654
No 289
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=69.29 E-value=1.7 Score=34.70 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|..+++.|+.|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567899999999999765
No 290
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=69.20 E-value=3.5 Score=43.38 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=17.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHH
Q 020452 76 IGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 76 lv~apTGsGKT~~~~l~il~~~ 97 (326)
+|.|..|||||.+.+--+...+
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll 26 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDEL 26 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEeCCCCChHHHHHHHHHHHH
Confidence 6789999999988766555544
No 291
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=69.14 E-value=6.8 Score=34.47 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+++.+++|+|||.....
T Consensus 106 vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHH
Confidence 467899999999976543
No 292
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=69.09 E-value=3.6 Score=37.96 Aligned_cols=24 Identities=33% Similarity=0.500 Sum_probs=17.4
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q 020452 66 PAAAHQGKD--IIGAAETGSGKTLAFG 90 (326)
Q Consensus 66 ~~~l~~g~d--vlv~apTGsGKT~~~~ 90 (326)
..++ +|.| ++..|.||||||++..
T Consensus 148 ~~~l-~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 148 QTIF-EGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHH-TTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHh-cCCceeEEeecCCCCCCCeEee
Confidence 3343 6776 4567899999998863
No 293
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.04 E-value=4 Score=37.54 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=18.9
Q ss_pred HHHHHHhcCCcE--EEEcCCCchHHHHH
Q 020452 64 CIPAAAHQGKDI--IGAAETGSGKTLAF 89 (326)
Q Consensus 64 ~i~~~l~~g~dv--lv~apTGsGKT~~~ 89 (326)
.+..++ +|.|. +..|.||||||++.
T Consensus 132 lv~~~l-~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSL-DGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHH-TTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHh-CCcceEEEEECCCCCCCceEe
Confidence 455554 78765 56789999999886
No 294
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=68.91 E-value=4.3 Score=39.42 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.5
Q ss_pred HhcCCcEEEEcCCCchHHHHH
Q 020452 69 AHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~ 89 (326)
+..|..+++.+|+|+|||..+
T Consensus 57 i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHHH
Confidence 468899999999999999665
No 295
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=68.68 E-value=2.7 Score=37.71 Aligned_cols=17 Identities=35% Similarity=0.098 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
-+++.||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 57889999999997653
No 296
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=68.62 E-value=13 Score=36.61 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=52.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcC--------------------------------CCcEEEEEEcCCCHHHHHHHH
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKG--------------------------------INVRVVPIVGGMSTEKQERLL 170 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~--------------------------------~~~~v~~~~g~~~~~~~~~~~ 170 (326)
+.++||.+|++.-+..+++.+...... ....+..++|+....++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 458999999999999999888765321 012478899999887665443
Q ss_pred h----cCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEee
Q 020452 171 K----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206 (326)
Q Consensus 171 ~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lVi 206 (326)
. ....|+|+|. .+..+ .++..+.+||-
T Consensus 332 ~~f~~g~~~vlvaT~-----~l~~G----idip~~~~VI~ 362 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TLAAG----VNLPARTVIIG 362 (715)
T ss_dssp HHHHTTCSCEEEECG-----GGGGS----SCCCBSEEEEC
T ss_pred HHHHcCCCeEEEECh-----HHhcc----cCCCceEEEEe
Confidence 3 4678999994 23333 67778877553
No 297
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=68.52 E-value=4 Score=36.46 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=18.5
Q ss_pred HHHHHHhcCCc--EEEEcCCCchHHHHH
Q 020452 64 CIPAAAHQGKD--IIGAAETGSGKTLAF 89 (326)
Q Consensus 64 ~i~~~l~~g~d--vlv~apTGsGKT~~~ 89 (326)
.+..++ +|.| ++..|+||||||.+.
T Consensus 72 lv~~~l-~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCI-DGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHh-CCCEEEEEeECCCCCCCcEEE
Confidence 444554 7776 466899999999876
No 298
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=68.47 E-value=4 Score=36.80 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=15.4
Q ss_pred cCCc--EEEEcCCCchHHHHH
Q 020452 71 QGKD--IIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~d--vlv~apTGsGKT~~~ 89 (326)
+|.| ++.-|.||||||.+.
T Consensus 87 ~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 87 EGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCceeEEeecCCCCCCCEEe
Confidence 6776 466899999999886
No 299
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=68.46 E-value=4 Score=37.05 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=15.5
Q ss_pred cCCc--EEEEcCCCchHHHHH
Q 020452 71 QGKD--IIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~d--vlv~apTGsGKT~~~ 89 (326)
+|.| ++.-|.||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 82 AGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCceEEEeecCCCCCCceEE
Confidence 6776 466899999999886
No 300
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=68.38 E-value=3.2 Score=38.25 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=15.8
Q ss_pred hhHhhhCCCHHHHHHHHHhC
Q 020452 209 ADRMIENGHFRELQSIIDML 228 (326)
Q Consensus 209 ah~l~~~~~~~~i~~il~~l 228 (326)
+|.|++.|+.+.+..++...
T Consensus 209 vd~Ml~~GlleEv~~L~~~~ 228 (409)
T 3eph_A 209 VDDMLERGALQEIKQLYEYY 228 (409)
T ss_dssp HHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHCcHHHHHHHHHHhc
Confidence 35688889999999888763
No 301
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=68.22 E-value=4.1 Score=36.65 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=15.3
Q ss_pred cCCcE--EEEcCCCchHHHHH
Q 020452 71 QGKDI--IGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dv--lv~apTGsGKT~~~ 89 (326)
+|.|. +..++||||||.+.
T Consensus 81 ~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 81 EGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred hhcCeeEEEecccCCCceEee
Confidence 67764 66789999999875
No 302
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=68.14 E-value=3.8 Score=37.26 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=15.4
Q ss_pred cCCcE--EEEcCCCchHHHHH
Q 020452 71 QGKDI--IGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dv--lv~apTGsGKT~~~ 89 (326)
+|.|. +..|+||||||++.
T Consensus 99 ~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 99 QGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred CCCeeeEEeecCCCCCCCEeE
Confidence 67764 56789999999885
No 303
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=68.02 E-value=2.8 Score=34.24 Aligned_cols=21 Identities=24% Similarity=-0.076 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|.-+++.+|+|+|||..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456789999999999976544
No 304
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=67.97 E-value=4.1 Score=36.97 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=17.0
Q ss_pred HHHHhcCCcE--EEEcCCCchHHHHH
Q 020452 66 PAAAHQGKDI--IGAAETGSGKTLAF 89 (326)
Q Consensus 66 ~~~l~~g~dv--lv~apTGsGKT~~~ 89 (326)
..++ +|.|. +..|.||||||.+.
T Consensus 83 ~~~l-~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 83 QHAF-EGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHh-cCCeeEEEEeCCCCCCCceEe
Confidence 3443 67764 56799999999876
No 305
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=67.97 E-value=3.9 Score=36.90 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=17.3
Q ss_pred HHHHhcCCcE--EEEcCCCchHHHHH
Q 020452 66 PAAAHQGKDI--IGAAETGSGKTLAF 89 (326)
Q Consensus 66 ~~~l~~g~dv--lv~apTGsGKT~~~ 89 (326)
..++ +|.|. +.-|+||||||.+.
T Consensus 86 ~~~l-~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 86 QNAF-DGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHH-TTCCEEEEEEECTTSSHHHHH
T ss_pred HHHh-CCceeEEEeeCCCCCCCceEE
Confidence 3443 67764 66789999999886
No 306
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=67.84 E-value=3 Score=48.18 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCcEEEEcCCCchHHHH
Q 020452 62 KACIPAAAHQGKDIIGAAETGSGKTLA 88 (326)
Q Consensus 62 ~~~i~~~l~~g~dvlv~apTGsGKT~~ 88 (326)
...+..++..++.++++||||+|||..
T Consensus 1294 ~~ll~~ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1294 VDVLHAWLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHHHHHHHHTTCCCEEESSTTSSHHHH
T ss_pred HHHHHHHHHCCCcEEEECCCCCCHHHH
Confidence 445566667899999999999999954
No 307
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=67.76 E-value=3.9 Score=36.81 Aligned_cols=19 Identities=42% Similarity=0.608 Sum_probs=15.5
Q ss_pred cCCc--EEEEcCCCchHHHHH
Q 020452 71 QGKD--IIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~d--vlv~apTGsGKT~~~ 89 (326)
+|.| ++..|+||||||.+.
T Consensus 75 ~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 75 QGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred cCCccceeeecCCCCCCCeEE
Confidence 6776 466899999999886
No 308
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=67.55 E-value=3.9 Score=37.02 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=17.0
Q ss_pred HHHHhcCCcE--EEEcCCCchHHHHH
Q 020452 66 PAAAHQGKDI--IGAAETGSGKTLAF 89 (326)
Q Consensus 66 ~~~l~~g~dv--lv~apTGsGKT~~~ 89 (326)
..++ .|.|. +.-|.||||||++.
T Consensus 82 ~~~l-~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 82 DEVI-MGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHH-TTCEEEEEEEECTTSSHHHHH
T ss_pred HHHh-CCCceEEEEeCCCCCCCceEE
Confidence 3343 67764 56789999999876
No 309
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=67.47 E-value=4 Score=36.90 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=17.5
Q ss_pred HHHHHhcCCcE--EEEcCCCchHHHHH
Q 020452 65 IPAAAHQGKDI--IGAAETGSGKTLAF 89 (326)
Q Consensus 65 i~~~l~~g~dv--lv~apTGsGKT~~~ 89 (326)
+..++ +|.|. +.-++||||||.+.
T Consensus 96 v~~~l-~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQAL-DGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHh-CCCceEEEEECCCCCCCceEe
Confidence 34444 67764 55789999999885
No 310
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=67.30 E-value=8.3 Score=38.11 Aligned_cols=77 Identities=23% Similarity=0.183 Sum_probs=44.3
Q ss_pred CccccccceeeecCCCCcchhhccCcccccccccccccCCCCHHHHHHHHHCCCC--CC--hHHHHHHHHHHHhc--CCc
Q 020452 1 MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFK--EP--TPIQKACIPAAAHQ--GKD 74 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~--~p--~~~Q~~~i~~~l~~--g~d 74 (326)
+++|-+|+.++..|+..... - ..+.+++..+..... .| ..+=..|+..++.. .+.
T Consensus 36 ~IYTy~G~iLiavNPyk~l~--------------i-----Y~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQs 96 (697)
T 1lkx_A 36 NIYTYIGDVVISTNPFKNLN--------------I-----YKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQC 96 (697)
T ss_dssp CCEEESSSCEEEECCSSCCS--------------C-----CSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEE
T ss_pred CcEEeeCCeEEEEcCCcCCC--------------C-----CCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcE
Confidence 46788888888888765331 0 123333333222111 12 33444566555444 457
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~ 97 (326)
+|+.|.+|+|||.+.-. +++.+
T Consensus 97 IiisGESGAGKTe~tK~-i~~yl 118 (697)
T 1lkx_A 97 VIISGESGAGKTEASKK-IMQFL 118 (697)
T ss_dssp EEEECSTTSSHHHHHHH-HHHHH
T ss_pred EEecCCCCCCchhhHHH-HHHHH
Confidence 99999999999998643 33443
No 311
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=67.09 E-value=4 Score=36.87 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.4
Q ss_pred cCCcE--EEEcCCCchHHHHH
Q 020452 71 QGKDI--IGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dv--lv~apTGsGKT~~~ 89 (326)
+|.|. +.-|+||||||.+.
T Consensus 103 ~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 103 NGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTCCEEEEEECCTTSSHHHHH
T ss_pred CCCceEEEEeCCCCCCceeee
Confidence 67764 66799999999886
No 312
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=66.99 E-value=3 Score=33.85 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|.-+.+.||+|||||...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35667889999999999665
No 313
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=66.98 E-value=4 Score=36.89 Aligned_cols=19 Identities=26% Similarity=0.627 Sum_probs=15.5
Q ss_pred cCCc--EEEEcCCCchHHHHH
Q 020452 71 QGKD--IIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~d--vlv~apTGsGKT~~~ 89 (326)
+|.| ++..|+||||||++.
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 78 NGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCcceEEEECCCCCCcceEe
Confidence 6776 466899999999886
No 314
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=66.91 E-value=46 Score=26.63 Aligned_cols=66 Identities=15% Similarity=0.002 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
.|..+-+.+..|.|=|+.+.+|+...-..... ..........+.++||+-........+...+...
T Consensus 19 hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~----------~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~ 84 (206)
T 3mm4_A 19 HMASTDSESETRVKSVRTGRKPIGNPEDEQET----------SKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM 84 (206)
T ss_dssp ----------------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT
T ss_pred cCCceeeeccCCCcceeeeccCCCCCcccccc----------cCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 46778888999999999999997543211100 0011112234568888888777666665555544
No 315
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=66.90 E-value=3.5 Score=37.13 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=18.4
Q ss_pred HHHHHHhcCCcE--EEEcCCCchHHHHH
Q 020452 64 CIPAAAHQGKDI--IGAAETGSGKTLAF 89 (326)
Q Consensus 64 ~i~~~l~~g~dv--lv~apTGsGKT~~~ 89 (326)
.+..++ +|.|. +..|.||||||.+.
T Consensus 77 lv~~~l-~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSL-DGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGG-TTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHH-CCcceeEEEeCCCCCCCceEe
Confidence 444453 78765 56799999999886
No 316
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=66.49 E-value=4 Score=37.65 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=18.7
Q ss_pred HHHHHHhcCCcE--EEEcCCCchHHHHH
Q 020452 64 CIPAAAHQGKDI--IGAAETGSGKTLAF 89 (326)
Q Consensus 64 ~i~~~l~~g~dv--lv~apTGsGKT~~~ 89 (326)
.+..++ .|.|. +..|.||||||++.
T Consensus 130 lv~~~l-~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSAL-DGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHH-CCCceEEEEecCCCCCCeeEe
Confidence 455554 78764 56789999999885
No 317
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=66.40 E-value=4.9 Score=35.20 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l 91 (326)
++-+++.+++|+|||.....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45678899999999976544
No 318
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=66.31 E-value=4.5 Score=36.97 Aligned_cols=24 Identities=33% Similarity=0.500 Sum_probs=17.4
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q 020452 66 PAAAHQGKD--IIGAAETGSGKTLAFG 90 (326)
Q Consensus 66 ~~~l~~g~d--vlv~apTGsGKT~~~~ 90 (326)
..++ +|.| ++.-|.||||||.+..
T Consensus 128 ~~~l-~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 128 QTIF-EGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHH-TTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHh-cCCceEEEEecCCCCCCCeEec
Confidence 3343 6776 4667999999998863
No 319
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=66.26 E-value=4.2 Score=36.98 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=15.3
Q ss_pred cCCc--EEEEcCCCchHHHHH
Q 020452 71 QGKD--IIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~d--vlv~apTGsGKT~~~ 89 (326)
+|.| ++..|.||||||++.
T Consensus 98 ~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 98 NGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEeecCCCCCcceec
Confidence 6776 466899999999875
No 320
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=66.21 E-value=2.7 Score=34.15 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
.-+++.|+.|||||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999765
No 321
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=66.16 E-value=3.3 Score=38.69 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
.++++.||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999997653
No 322
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=66.15 E-value=2.7 Score=33.63 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
.-+++.+|+|+|||...-
T Consensus 3 ~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 346789999999997653
No 323
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=66.02 E-value=3.9 Score=37.17 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=18.4
Q ss_pred HHHHHHhcCCcE--EEEcCCCchHHHHH
Q 020452 64 CIPAAAHQGKDI--IGAAETGSGKTLAF 89 (326)
Q Consensus 64 ~i~~~l~~g~dv--lv~apTGsGKT~~~ 89 (326)
.+..++ +|.|. +..|.||||||++.
T Consensus 71 lv~~~l-~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAV-DGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHH-TTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhh-cCCceEEEEECCCCCCCeEee
Confidence 344554 78764 55789999999886
No 324
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=65.84 E-value=2.6 Score=40.96 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999654
No 325
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=65.65 E-value=4.7 Score=36.44 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|.-+++.+|+|+|||...
T Consensus 60 ~G~i~~I~GppGsGKSTLa 78 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLA 78 (356)
T ss_dssp TTEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556788999999999654
No 326
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=65.55 E-value=3.1 Score=38.78 Aligned_cols=18 Identities=39% Similarity=0.386 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
.+++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999765
No 327
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=65.42 E-value=2.7 Score=39.39 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
...++++.||+|+|||...-
T Consensus 200 ~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 34589999999999997653
No 328
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=65.37 E-value=2.5 Score=36.88 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
.-++++||+|||||..+-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999997653
No 329
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=65.21 E-value=4 Score=33.83 Aligned_cols=24 Identities=21% Similarity=0.001 Sum_probs=18.3
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~i 93 (326)
..|.-+.+.+|+|+|||......+
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHH
Confidence 356778999999999997664433
No 330
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=65.21 E-value=2.5 Score=33.74 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+.-+++.|+.|||||...
T Consensus 4 ~~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456889999999999765
No 331
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=65.18 E-value=4.9 Score=37.46 Aligned_cols=19 Identities=37% Similarity=0.648 Sum_probs=15.6
Q ss_pred cCCc--EEEEcCCCchHHHHH
Q 020452 71 QGKD--IIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~d--vlv~apTGsGKT~~~ 89 (326)
+|.| ++..|.||||||++.
T Consensus 134 ~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 134 EGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred cCCceEEEEeCCCCCCCCEEe
Confidence 6776 466789999999886
No 332
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=65.06 E-value=8.9 Score=38.41 Aligned_cols=77 Identities=18% Similarity=0.156 Sum_probs=45.3
Q ss_pred CccccccceeeecCCCCcchhhccCcccccccccccccCCCCHHHHHHHHHCCCC----CChHHHHHHHHHHHhc--CCc
Q 020452 1 MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFK----EPTPIQKACIPAAAHQ--GKD 74 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~----~p~~~Q~~~i~~~l~~--g~d 74 (326)
+++|-+|+.++..|+..... - ..+.+++........ +...+=..|+..++.. .+.
T Consensus 113 ~IYTy~G~iLvavNPyk~l~--------------i-----Y~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQs 173 (783)
T 4db1_A 113 MIYTYSGLFCVTVNPYKWLP--------------V-----YTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQS 173 (783)
T ss_dssp CCEEEETTEEEEECCSSCCS--------------C-----SSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEE
T ss_pred ceEEecCceeEecCCCccCC--------------C-----CCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCce
Confidence 46788888888888765320 0 133444433322211 2234445566555443 457
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~ 97 (326)
+|+.|.+|+|||.+.-. +++.+
T Consensus 174 IiiSGESGAGKTe~tK~-im~yl 195 (783)
T 4db1_A 174 ILITGESGAGKTVNTKR-VIQYF 195 (783)
T ss_dssp EEEECSTTSSHHHHHHH-HHHHH
T ss_pred EEEeCCCCCCCchHHHH-HHHhh
Confidence 99999999999998744 33444
No 333
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=65.00 E-value=9 Score=38.29 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=42.4
Q ss_pred CccccccceeeecCCCCcchhhccCcccccccccccccCC-CCHHHHHHHHHCCCC--CC--hHHHHHHHHHHHhc--CC
Q 020452 1 MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELR-LHPLLMKSIYRLGFK--EP--TPIQKACIPAAAHQ--GK 73 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~-l~~~i~~~l~~~g~~--~p--~~~Q~~~i~~~l~~--g~ 73 (326)
+++|-+|..++..|+.... + ..+.+++........ .| ..+=..|+..++.. .+
T Consensus 114 ~IYTy~G~iLvavNPyk~l--------------------~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQ 173 (770)
T 1w9i_A 114 LIYTYSGLFLVAVNPFKRI--------------------PIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQ 173 (770)
T ss_dssp CCEEEETTEEEEECCSSCC--------------------SCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCE
T ss_pred CceeccCceeEEecCCccc--------------------cCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCc
Confidence 4677888888888776532 1 133344333322221 12 23444566555444 45
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
.+++.|.+|+|||.+.-.
T Consensus 174 sIiisGESGAGKTe~tK~ 191 (770)
T 1w9i_A 174 SLLITGESGAGKTENTKK 191 (770)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEecCCCCcchHHHHH
Confidence 799999999999998644
No 334
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=64.93 E-value=1.3 Score=39.75 Aligned_cols=71 Identities=17% Similarity=0.387 Sum_probs=0.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.+++++-+..+++.++.. +..+..++|+.........+ .....|+|+|. .+..+ .++
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----ldi 325 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARG----IDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-----hhhcC----CCc
Confidence 348999999999998888877664 67788888887655443322 23567999984 23333 566
Q ss_pred CCeeEEee
Q 020452 199 HTLSFFVL 206 (326)
Q Consensus 199 ~~l~~lVi 206 (326)
.+++++|.
T Consensus 326 ~~~~~Vi~ 333 (394)
T 1fuu_A 326 QQVSLVIN 333 (394)
T ss_dssp --------
T ss_pred ccCCEEEE
Confidence 67777764
No 335
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=64.90 E-value=8 Score=39.95 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=45.2
Q ss_pred CccccccceeeecCCCCcchhhccCcccccccccccccCCCCHHHHHHHHHCCCC--CC--hHHHHHHHHHHHhc--CCc
Q 020452 1 MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFK--EP--TPIQKACIPAAAHQ--GKD 74 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~--~p--~~~Q~~~i~~~l~~--g~d 74 (326)
+++|-+|+.++..|+..... - ..+.++......... .| +.+=..|+..++.. .+.
T Consensus 88 ~iYTy~G~ilvavNPyk~l~--------------i-----y~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~Qs 148 (995)
T 2ycu_A 88 LIYTYSGLFCVVINPYKQLP--------------I-----YTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQS 148 (995)
T ss_dssp CCEEEETTEEEEECCSSCCS--------------C-----CSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEE
T ss_pred ceeeecCceeeeeCCccccC--------------C-----CCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcE
Confidence 46788888888888775320 0 134444433332221 12 23444566555443 457
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~ 97 (326)
+|+.|.+|+|||.+.-. +++.+
T Consensus 149 IiisGESGAGKTe~~K~-i~~yl 170 (995)
T 2ycu_A 149 ILCTGESGAGKTENTKK-VIQYL 170 (995)
T ss_dssp EEEECBTTSSHHHHHHH-HHHHH
T ss_pred EEecCCCCCCchhhHHH-HHHHH
Confidence 99999999999998644 33444
No 336
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=64.89 E-value=12 Score=37.60 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=45.2
Q ss_pred CccccccceeeecCCCCcchhhccCcccccccccccccCCCCHHHHHHHHHCCCCC--C--hHHHHHHHHHHHhc--CCc
Q 020452 1 MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKE--P--TPIQKACIPAAAHQ--GKD 74 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~--p--~~~Q~~~i~~~l~~--g~d 74 (326)
+++|-+|+.++..|+...... - ..+.+++......... | ..+=..|+..++.. .+.
T Consensus 81 ~IYTy~G~iLiaVNPyk~l~~-------------i-----Y~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQs 142 (784)
T 2v26_A 81 RIYTYVANILIAVNPYFDIPK-------------I-----YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQS 142 (784)
T ss_dssp CCEEEETTEEEEECCSSCCTT-------------T-----TSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEE
T ss_pred ceeeeccceEEEecCCcCcCC-------------C-----CCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcE
Confidence 467788888888877653310 0 1334444333322221 2 34445566665443 457
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~ 97 (326)
+|+.|.+|+|||.+.-. +++.+
T Consensus 143 IiiSGESGAGKTe~tK~-i~~yl 164 (784)
T 2v26_A 143 IIVSGESGAGKTENTKF-VLRYL 164 (784)
T ss_dssp EEEECSTTSSHHHHHHH-HHHHH
T ss_pred EEEcCCCCCCceehHHH-HHHHH
Confidence 99999999999988644 33443
No 337
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=64.69 E-value=3.2 Score=32.24 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-.++.+|+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4578999999999764
No 338
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=64.66 E-value=2.9 Score=33.74 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4677899999999999765
No 339
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=64.65 E-value=11 Score=39.17 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=45.2
Q ss_pred CccccccceeeecCCCCcchhhccCcccccccccccccCCCCHHHHHHHHHCCCC--CC--hHHHHHHHHHHHhc--CCc
Q 020452 1 MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFK--EP--TPIQKACIPAAAHQ--GKD 74 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~--~p--~~~Q~~~i~~~l~~--g~d 74 (326)
+++|-+|+.++..|+..... - ..+.++......... .| +.+=..|+..++.. .+.
T Consensus 98 ~iYTy~G~iLiavNPyk~l~--------------i-----y~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~Qs 158 (1080)
T 2dfs_A 98 LIYTYCGIVLVAINPYEQLP--------------I-----YGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQS 158 (1080)
T ss_dssp CCEEEETTEEEEECCSSCCS--------------C-----SSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEE
T ss_pred CchhccCceeEEecCCcccc--------------c-----CCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcE
Confidence 46788888888888776330 0 123444433332221 22 23444566555443 457
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~ 97 (326)
+|+.|.+|+|||.+.-. +++.+
T Consensus 159 IiisGESGAGKTe~~K~-i~~yl 180 (1080)
T 2dfs_A 159 IIVSGESGAGKTVSAKY-AMRYF 180 (1080)
T ss_dssp EEEECSTTSSHHHHHHH-HHHHH
T ss_pred EEEcCCCCCCccchHHH-HHHHH
Confidence 99999999999998644 33443
No 340
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=64.65 E-value=3.9 Score=40.07 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=43.3
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEc--------CCCHHHHHHHH----h-cCCCEEEeCcHHHHHHH
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG--------GMSTEKQERLL----K-ARPELVVGTPGRLWELM 188 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g--------~~~~~~~~~~~----~-~~~~IlV~Tp~~l~~ll 188 (326)
.+.++||.++++.-+..+++.+.......++++..++| +....++...+ . ....|||+|- .+
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v~ 471 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----VA 471 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----SS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----hh
Confidence 34589999999999999999888753222367777755 55444333222 2 4578999993 23
Q ss_pred hcCCcccccCCCeeEEeecch
Q 020452 189 SGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEa 209 (326)
..| +++.++++||.-+.
T Consensus 472 ~~G----iDip~v~~VI~~d~ 488 (696)
T 2ykg_A 472 DEG----IDIAQCNLVILYEY 488 (696)
T ss_dssp CCC-------CCCSEEEEESC
T ss_pred hcC----CcCccCCEEEEeCC
Confidence 333 67778888886444
No 341
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=64.62 E-value=9.1 Score=38.68 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=44.8
Q ss_pred CccccccceeeecCCCCcchhhccCcccccccccccccCC-CCHHHHHHHHHCCCC--CC--hHHHHHHHHHHHhcC--C
Q 020452 1 MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELR-LHPLLMKSIYRLGFK--EP--TPIQKACIPAAAHQG--K 73 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~-l~~~i~~~l~~~g~~--~p--~~~Q~~~i~~~l~~g--~ 73 (326)
+++|-+|+.++..|+.... + ..+.++......... .| ..+=..|+..++..+ +
T Consensus 111 ~IYTy~G~iLiavNPyk~l--------------------~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQ 170 (837)
T 1kk8_A 111 LIYTYSGLFCIAVNPYRRL--------------------PIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQ 170 (837)
T ss_dssp CCEEEETTEEEEECCSSCC--------------------STTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEE
T ss_pred CceeeccceeEEeCCCcCC--------------------CCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCc
Confidence 4678888888888776532 1 133444433322211 12 334445665555444 5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.+|+.|.+|+|||.+.-. +++.+
T Consensus 171 sIiiSGESGAGKTe~tK~-i~~yl 193 (837)
T 1kk8_A 171 SCLITGESGAGKTENTKK-VIMYL 193 (837)
T ss_dssp EEEEECSTTSSHHHHHHH-HHHHH
T ss_pred EEEEeCCCCCCchhhHHH-HHHHH
Confidence 799999999999998644 34444
No 342
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=64.60 E-value=12 Score=37.69 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=45.2
Q ss_pred CccccccceeeecCCCCcchhhccCcccccccccccccCCCCHHHHHHHHHCCCC--CC--hHHHHHHHHHHHhc--CCc
Q 020452 1 MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFK--EP--TPIQKACIPAAAHQ--GKD 74 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~--~p--~~~Q~~~i~~~l~~--g~d 74 (326)
+++|-+|+.++..|+..... - ..+.+++..+..... .| ..+=..|+..++.. .+.
T Consensus 98 ~IYTy~G~iLiavNPyk~l~--------------i-----Y~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQs 158 (795)
T 1w7j_A 98 LIYTYCGIVLVAINPYEQLP--------------I-----YGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQS 158 (795)
T ss_dssp CCEEEETTEEEEECCSSCCS--------------C-----CSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEE
T ss_pred cchhccCcceEEecCccccC--------------c-----CCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeE
Confidence 46788888888888776330 0 123444433332221 12 23445566565443 457
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~ 97 (326)
+++.|.+|+|||.+.-. +++.+
T Consensus 159 IiisGESGAGKTe~tK~-i~~yl 180 (795)
T 1w7j_A 159 IIVSGESGAGKTVSAKY-AMRYF 180 (795)
T ss_dssp EEEECSTTSSHHHHHHH-HHHHH
T ss_pred EEEeCCCCCCcchHHHH-HHHHH
Confidence 99999999999998644 33444
No 343
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=64.51 E-value=4.2 Score=36.68 Aligned_cols=71 Identities=17% Similarity=0.375 Sum_probs=45.4
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..+++.+... ++.+..++|+.........+. ...+|+|+|. .+..+ .++.
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idip 347 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LLARG----IDVQ 347 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SCC------CCGG
T ss_pred CcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----ccccC----CCcc
Confidence 47999999999998888877654 778888999887665544332 3568999994 23332 5666
Q ss_pred CeeEEeec
Q 020452 200 TLSFFVLD 207 (326)
Q Consensus 200 ~l~~lViD 207 (326)
+++++|.-
T Consensus 348 ~v~~Vi~~ 355 (414)
T 3eiq_A 348 QVSLVINY 355 (414)
T ss_dssp GCSCEEES
T ss_pred CCCEEEEe
Confidence 77777743
No 344
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=64.35 E-value=5.5 Score=34.88 Aligned_cols=25 Identities=8% Similarity=-0.039 Sum_probs=18.7
Q ss_pred HHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 65 IPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 65 i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+..++..++.+++.||.|+|||...
T Consensus 24 L~~~l~~~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 24 LEESLENYPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp HHHHHHHCSEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCeEEEECCCcCCHHHHH
Confidence 3333445788999999999999654
No 345
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=64.33 E-value=4.1 Score=32.66 Aligned_cols=20 Identities=30% Similarity=0.238 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..+.-+++.|+.|||||...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999765
No 346
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=64.29 E-value=7.4 Score=31.04 Aligned_cols=16 Identities=25% Similarity=0.009 Sum_probs=12.8
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-+.+.+++|||||...
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999643
No 347
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=64.28 E-value=6.1 Score=33.26 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=17.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~ 95 (326)
++++.++.|+|||...+--+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6889999999999886554443
No 348
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=64.27 E-value=4.1 Score=37.23 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=22.1
Q ss_pred ChHHHHHHHHH--------HHhcCCc--EEEEcCCCchHHHHH
Q 020452 57 PTPIQKACIPA--------AAHQGKD--IIGAAETGSGKTLAF 89 (326)
Q Consensus 57 p~~~Q~~~i~~--------~l~~g~d--vlv~apTGsGKT~~~ 89 (326)
+..-|.+++.. ++ +|.| ++.-|.||||||++.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l-~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLL-EGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHT-TTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhh-cCceeeEeeecCCCCCCCeEe
Confidence 44556666543 33 6776 456899999999886
No 349
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=64.24 E-value=86 Score=31.27 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=51.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhc----CCC--EEEeCcHHHHHHHhcCCcccc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA----RPE--LVVGTPGRLWELMSGGEKHLV 196 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~--IlV~Tp~~l~~ll~~~~~~~~ 196 (326)
+-++||.+..+..+..+.+.+... ++.+..++|+++.......+.. ... +++.+... ...| +
T Consensus 572 g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a----gg~G----l 639 (800)
T 3mwy_W 572 GHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA----GGLG----I 639 (800)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH----HTTT----C
T ss_pred CCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc----ccCC----C
Confidence 458999999999888777777655 7888999999988777666643 122 34444322 2333 6
Q ss_pred cCCCeeEEeecchh
Q 020452 197 ELHTLSFFVLDEAD 210 (326)
Q Consensus 197 ~l~~l~~lViDEah 210 (326)
++...+.||+=+.+
T Consensus 640 NL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 640 NLMTADTVVIFDSD 653 (800)
T ss_dssp CCTTCCEEEESSCC
T ss_pred CccccceEEEecCC
Confidence 67777777765554
No 350
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=64.22 E-value=4.3 Score=32.54 Aligned_cols=16 Identities=44% Similarity=0.507 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
.+.+.+|+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999654
No 351
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=63.93 E-value=2.6 Score=34.58 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|.-+.+.||+|||||...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556788999999999653
No 352
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=63.91 E-value=4.5 Score=44.10 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=53.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 151 (326)
|+-+.+.+|.|||||..++- ++....+ .+..|+|+.+-.+|.... ++.+ |
T Consensus 1431 g~~iei~g~~~sGkttl~~~-~~a~~~~----------------------~g~~~~~i~~e~~~~~~~---~~~~----G 1480 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQ-VIAAAQR----------------------EGKTCAFIDAEHALDPIY---ARKL----G 1480 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHH-HHHHHHH----------------------TTCCEEEECTTSCCCHHH---HHHT----T
T ss_pred CCEEEEEcCCCCCHHHHHHH-HHHHHHh----------------------cCCeEEEEecCCCCCHHH---HHHc----C
Confidence 35689999999999977644 3333221 144799999887776553 3343 4
Q ss_pred cEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH---HHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRL---WELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 152 ~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l---~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
+.. -+++|+-|+.- +..+.. ...-..+++||+|.+..+..
T Consensus 1481 v~~-------------------~~l~~~~p~~~e~~l~~~~~----~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1481 VDI-------------------DNLLCSQPDTGEQALEICDA----LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp CCG-------------------GGCEEECCSSHHHHHHHHHH----HHHHTCCSEEEESCSTTCCC
T ss_pred CCH-------------------HHeEEeCCCcHHHHHHHHHH----HHHcCCCCEEEEccHHhCCc
Confidence 321 12566666332 222211 01123478999999887753
No 353
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=63.87 E-value=2.8 Score=34.49 Aligned_cols=22 Identities=27% Similarity=0.025 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l 91 (326)
..|.-+.+.+|+|+|||.....
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3566788999999999966533
No 354
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=63.81 E-value=2.9 Score=35.27 Aligned_cols=32 Identities=6% Similarity=0.177 Sum_probs=23.5
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+.+-+++++||.-.-+|......+..++..+.
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 45568999999988887666667777776653
No 355
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=63.63 E-value=28 Score=31.95 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHHH--hcCCcEEEEcCCCchHHHHHH
Q 020452 56 EPTPIQKACIPAAA--HQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l--~~g~dvlv~apTGsGKT~~~~ 90 (326)
.|-..-.++|..++ ..|+.+.+.+|+|+|||....
T Consensus 156 ~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 156 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp CTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred CcccccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 34555566776642 368899999999999997653
No 356
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=63.54 E-value=3.5 Score=32.23 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~ 90 (326)
-+++++.++.|||||...-
T Consensus 7 ~~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp -CEEEEESCTTSSHHHHHH
T ss_pred cceEEEECCCCCCHHHHHH
Confidence 3688999999999997653
No 357
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=63.33 E-value=3.7 Score=32.40 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
+.+++.++.|||||...-
T Consensus 5 ~~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 368899999999997653
No 358
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=63.33 E-value=3.3 Score=34.47 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=12.4
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|.-+.+.||+|+|||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35667889999999999664
No 359
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=62.77 E-value=3.3 Score=32.83 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|.-+++.++.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667889999999999754
No 360
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=62.71 E-value=4.6 Score=31.97 Aligned_cols=16 Identities=25% Similarity=0.040 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-.++.+|+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5678999999999664
No 361
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=62.68 E-value=3.9 Score=33.66 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+..+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999765
No 362
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=62.62 E-value=3.5 Score=39.55 Aligned_cols=18 Identities=33% Similarity=0.267 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
|..+++.+|+|+|||..+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 678999999999999665
No 363
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=62.56 E-value=3.6 Score=32.79 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~ 90 (326)
+.-+++.|++|||||..+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4567899999999997653
No 364
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=62.40 E-value=3 Score=33.97 Aligned_cols=19 Identities=37% Similarity=0.064 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|.-+.+.||+|||||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3455778999999999654
No 365
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=62.32 E-value=4.3 Score=35.85 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|.-+.+.+|+|+|||...
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 46788899999999999553
No 366
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=62.10 E-value=4.2 Score=32.30 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
..+++.++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999765
No 367
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=62.10 E-value=3.4 Score=37.36 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-.++.||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999765
No 368
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=61.82 E-value=3.7 Score=34.00 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+..+++.|++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 4567899999999999765
No 369
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=61.74 E-value=41 Score=28.65 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=50.3
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH---hc--CCC-EEEeCcHHHHHHHhcCCcccc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---KA--RPE-LVVGTPGRLWELMSGGEKHLV 196 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~--~~~-IlV~Tp~~l~~ll~~~~~~~~ 196 (326)
+-++||.+.++..+..+...+... .++.+..++|+++.......+ .. .+. ++++|- . ... ..
T Consensus 112 ~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~-~----~g~----Gl 179 (271)
T 1z5z_A 112 GDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-A----GGF----GI 179 (271)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC-T----TCC----CC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh-h----hcC----Cc
Confidence 348999999999888888887663 256778899998866554433 22 345 455553 2 122 26
Q ss_pred cCCCeeEEeecchh
Q 020452 197 ELHTLSFFVLDEAD 210 (326)
Q Consensus 197 ~l~~l~~lViDEah 210 (326)
++...+.+|+=+.+
T Consensus 180 nl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 180 NLTSANRVIHFDRW 193 (271)
T ss_dssp CCTTCSEEEECSCC
T ss_pred CcccCCEEEEECCC
Confidence 67778888765554
No 370
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=61.69 E-value=6 Score=31.68 Aligned_cols=16 Identities=38% Similarity=0.254 Sum_probs=12.9
Q ss_pred CcEEEEcCCCchHHHH
Q 020452 73 KDIIGAAETGSGKTLA 88 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~ 88 (326)
.-+++.+++|+|||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 3467899999999954
No 371
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=61.55 E-value=5.3 Score=39.30 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=41.9
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTP 181 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp 181 (326)
.+.++||.+++++-++++++.++.. ++++..++|+...... ...+.+|||+|.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd 447 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD 447 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC
Confidence 3458999999999999988888764 7889999999876542 234568999994
No 372
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=61.55 E-value=3.7 Score=33.60 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997653
No 373
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=61.49 E-value=5.8 Score=32.17 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=19.4
Q ss_pred CCCeeEEeecchhHhh--hCCCHHHHHHHHH
Q 020452 198 LHTLSFFVLDEADRMI--ENGHFRELQSIID 226 (326)
Q Consensus 198 l~~l~~lViDEah~l~--~~~~~~~i~~il~ 226 (326)
..+.+++|+||+..+- +..+...+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 4567899999987773 3345555555554
No 374
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=61.47 E-value=7.3 Score=41.08 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=45.6
Q ss_pred CccccccceeeecCCCCcchhhccCcccccccccccccCC-CCHHHHHHHHHCCCC--CC--hHHHHHHHHHHHhcC--C
Q 020452 1 MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELR-LHPLLMKSIYRLGFK--EP--TPIQKACIPAAAHQG--K 73 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~-l~~~i~~~l~~~g~~--~p--~~~Q~~~i~~~l~~g--~ 73 (326)
+++|-+|+.++..|+.... + ..+.++......... .| +.+=..|+..++..+ +
T Consensus 111 ~iyT~~g~~li~vNP~~~l--------------------~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q 170 (1184)
T 1i84_S 111 LIYTYSGLFCVVINPYKQL--------------------PIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQ 170 (1184)
T ss_dssp CCEEEETTEEEEECCCSCC--------------------SCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCE
T ss_pred CcEEecCcceeeeCCCcCC--------------------CCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCc
Confidence 4778888888888876532 1 134444444332222 22 234445666665444 5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.+|+.|.+|+|||.+.-. +++.+
T Consensus 171 ~i~isGeSGaGKTe~~k~-~~~yl 193 (1184)
T 1i84_S 171 SILCTGESGAGKTENTKK-VIQYL 193 (1184)
T ss_dssp EEECCCSTTSSTTHHHHH-HHHHH
T ss_pred EEEEecCCCCCccHHHHH-HHHHH
Confidence 789999999999988644 33444
No 375
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=61.33 E-value=6.4 Score=35.75 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=48.8
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEE-EEEcCCCHHHHHHHHhcCCCEEEe----CcHHHHHHHhcCCcccccC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVV-PIVGGMSTEKQERLLKARPELVVG----TPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~-~~~g~~~~~~~~~~~~~~~~IlV~----Tp~~l~~ll~~~~~~~~~l 198 (326)
.++||.|+++.-+..+++.+... ++++. .++|. ............+|+|+ |. .+..+ .++
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~h~~--~r~~~~f~~g~~~vLvat~s~T~-----~~~~G----iDi 317 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF--EKNFEDFKVGKINILIGVQAYYG-----KLTRG----VDL 317 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT----TCCEEESSSCH--HHHHHHHHTTSCSEEEEECCTTC-----CCCCC----CCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCceehhhcCc--chHHHHHhCCCCeEEEEecCcCc-----hhhcc----Ccc
Confidence 47999999999999999888775 67776 66664 22223333456899999 53 23333 778
Q ss_pred CC-eeEEeecch
Q 020452 199 HT-LSFFVLDEA 209 (326)
Q Consensus 199 ~~-l~~lViDEa 209 (326)
.+ +++||.-+.
T Consensus 318 p~~v~~VI~~~~ 329 (414)
T 3oiy_A 318 PERIKYVIFWGT 329 (414)
T ss_dssp TTTCCEEEEESC
T ss_pred ccccCEEEEECC
Confidence 88 888875433
No 376
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=61.31 E-value=3.6 Score=32.71 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999654
No 377
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=61.19 E-value=3.5 Score=38.48 Aligned_cols=55 Identities=7% Similarity=0.101 Sum_probs=39.4
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTP 181 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp 181 (326)
+.++||.+|++.-+..+++.++.. ++.+..++|...............+|||+|-
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESS
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECC
Confidence 347999999999999999888775 7788888886322111112234678999994
No 378
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=60.78 E-value=4.1 Score=31.86 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
+.+++.++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45789999999999765
No 379
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=60.71 E-value=4.7 Score=36.69 Aligned_cols=19 Identities=42% Similarity=0.667 Sum_probs=15.4
Q ss_pred cCCc--EEEEcCCCchHHHHH
Q 020452 71 QGKD--IIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~d--vlv~apTGsGKT~~~ 89 (326)
+|.| ++.-+.||||||++.
T Consensus 113 ~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 113 DGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp GTCCEEEEEECSTTSSHHHHH
T ss_pred CCCceEEEEeCCCCCCCceEe
Confidence 6776 456789999999876
No 380
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=60.68 E-value=4.9 Score=32.88 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
++.++... .. ..|.-+++.|+.|+|||...
T Consensus 13 ~~~~r~~~-~~-~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTEL-RN-QRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHHH-HT-SSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhcc-cC-CCCCEEEEECCCCCCHHHHH
Confidence 45555553 33 46778899999999999654
No 381
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=60.67 E-value=7.5 Score=34.87 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~i 93 (326)
.|.-+++.+|+|+|||...+-.+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999997654433
No 382
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=60.65 E-value=4 Score=33.39 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997653
No 383
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=60.60 E-value=4.5 Score=32.68 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
+..+++.|+.|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346889999999999765
No 384
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=60.49 E-value=4.3 Score=33.40 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~ 90 (326)
+..+.+.||+|||||...-
T Consensus 5 ~~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3567889999999997653
No 385
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=60.45 E-value=3.8 Score=32.71 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.+.-+++.|+.|||||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45578899999999997653
No 386
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=60.26 E-value=3.7 Score=34.67 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|.-+.+.+|+|+|||...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46778889999999999543
No 387
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=60.18 E-value=8.3 Score=34.74 Aligned_cols=23 Identities=26% Similarity=0.068 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~i 93 (326)
.|.-+++.+++|+|||..++-.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la 84 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVI 84 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999997664433
No 388
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=59.88 E-value=4.4 Score=33.37 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.+..+++.|+.|||||...-
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34678999999999997653
No 389
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=59.60 E-value=3.8 Score=40.87 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
...++++.||+|+|||..+-
T Consensus 200 ~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 34589999999999997753
No 390
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=59.59 E-value=4.4 Score=32.36 Aligned_cols=16 Identities=25% Similarity=0.165 Sum_probs=12.9
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-+.+.+++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999654
No 391
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=59.39 E-value=5.9 Score=34.28 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l 91 (326)
..|.-+++.||+|+|||.....
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHH
Confidence 4677889999999999965533
No 392
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=59.28 E-value=4.1 Score=33.84 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=26.1
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+.+-+++++||.-.-+|......+..++..+.
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 180 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 45668999999999998888888888777654
No 393
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=59.28 E-value=5.4 Score=34.26 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=18.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~ 92 (326)
..|.-+++.+|+|+|||......
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHH
Confidence 56788899999999999765443
No 394
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=59.26 E-value=4 Score=32.38 Aligned_cols=16 Identities=25% Similarity=0.246 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-+++.|+.|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999765
No 395
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=59.05 E-value=4.9 Score=33.78 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+.-+.+.||+|||||...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3467899999999999765
No 396
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=58.66 E-value=7.4 Score=40.10 Aligned_cols=91 Identities=21% Similarity=0.229 Sum_probs=61.8
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH---HhcC---CCEEEeCcHHHHHHHhcCCcccc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LKAR---PELVVGTPGRLWELMSGGEKHLV 196 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~---~~IlV~Tp~~l~~ll~~~~~~~~ 196 (326)
+.++||.|+++.-+..+.+.+... .|+++..++|+++....... +..+ .+|+|+| .. +..| .
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-~v----~~~G----l 570 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-EI----GSEG----R 570 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-CC----TTCS----S
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-ch----hhcC----C
Confidence 458999999999888877777642 37899999999875544333 3333 8899999 22 3333 7
Q ss_pred cCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCC
Q 020452 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230 (326)
Q Consensus 197 ~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~ 230 (326)
++.+++++|+-+.+ ++ ...+...+.+..+
T Consensus 571 Dl~~~~~VI~~d~p----~~-~~~~~Q~~GR~~R 599 (968)
T 3dmq_A 571 NFQFASHMVMFDLP----FN-PDLLEQRIGRLDR 599 (968)
T ss_dssp CCTTCCEEECSSCC----SS-HHHHHHHHHTTSC
T ss_pred CcccCcEEEEecCC----CC-HHHHHHHhhcccc
Confidence 78889999887665 22 3344455555543
No 397
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=58.63 E-value=4.2 Score=32.87 Aligned_cols=19 Identities=32% Similarity=0.242 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556889999999999765
No 398
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=58.62 E-value=6.5 Score=33.50 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.|..+++.|++|+|||...-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 38999999999999997753
No 399
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=58.36 E-value=18 Score=35.61 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=51.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCC--------------------------CcEEEEEEcCCCHHHHHHHHh----c
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGI--------------------------NVRVVPIVGGMSTEKQERLLK----A 172 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~--------------------------~~~v~~~~g~~~~~~~~~~~~----~ 172 (326)
+.++||.+|++.-+..+++.+....... +..+..++|+....++..... .
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 3479999999999999998887653210 124667899998766644332 4
Q ss_pred CCCEEEeCcHHHHHHHhcCCcccccCCCeeEEee
Q 020452 173 RPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206 (326)
Q Consensus 173 ~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lVi 206 (326)
..+|+|+|. .+..+ .++..+.+||-
T Consensus 322 ~~~vlvaT~-----~l~~G----idip~~~~VI~ 346 (702)
T 2p6r_A 322 NIKVVVATP-----TLAAG----VNLPARRVIVR 346 (702)
T ss_dssp SCCEEEECS-----TTTSS----SCCCBSEEEEC
T ss_pred CCeEEEECc-----HHhcc----CCCCceEEEEc
Confidence 678999995 23332 66777776553
No 400
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=58.18 E-value=25 Score=30.98 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHCCCC-----CChHHHHHHHHHHHhc----------------CCcEEEEcCCCchHHHHHH
Q 020452 40 RLHPLLMKSIYRLGFK-----EPTPIQKACIPAAAHQ----------------GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 40 ~l~~~i~~~l~~~g~~-----~p~~~Q~~~i~~~l~~----------------g~dvlv~apTGsGKT~~~~ 90 (326)
..++.+++..++.|+. ..+.--...+...+.. |+-+++.|++|+|||..++
T Consensus 91 ~~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~ 162 (314)
T 1ko7_A 91 EPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETAL 162 (314)
T ss_dssp CCCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHH
T ss_pred CCCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHH
Confidence 3478888888887763 2222222233333333 7789999999999986553
No 401
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=58.16 E-value=11 Score=35.52 Aligned_cols=78 Identities=21% Similarity=0.304 Sum_probs=35.4
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEE--------EcCCCHHHHHHHH----h-cCCCEEEeCcHHHHHHHh
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPI--------VGGMSTEKQERLL----K-ARPELVVGTPGRLWELMS 189 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~--------~g~~~~~~~~~~~----~-~~~~IlV~Tp~~l~~ll~ 189 (326)
+.++||.++++.-+..+.+.+.......++++..+ +|+....++...+ . ...+|+|||- .+.
T Consensus 390 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~ 464 (556)
T 4a2p_A 390 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD 464 (556)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC--------
T ss_pred CceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----chh
Confidence 45899999999999998888866421112333333 4444443332222 2 3568999994 233
Q ss_pred cCCcccccCCCeeEEeecch
Q 020452 190 GGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEa 209 (326)
.| +++.++++||.=+.
T Consensus 465 ~G----iDip~v~~VI~~d~ 480 (556)
T 4a2p_A 465 EG----IDIVQCNLVVLYEY 480 (556)
T ss_dssp ------------CEEEEETC
T ss_pred cC----CCchhCCEEEEeCC
Confidence 33 67788888886433
No 402
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=57.94 E-value=4.2 Score=34.05 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|.-+.+.+|+|+|||...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 46778889999999999553
No 403
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=57.85 E-value=5 Score=31.16 Aligned_cols=16 Identities=25% Similarity=-0.020 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4788999999999765
No 404
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=57.81 E-value=4.2 Score=36.74 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
=.++.|+||+|||...
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4578999999999774
No 405
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=57.72 E-value=5.5 Score=32.14 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|+-+++.+++|+|||..++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~ 35 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLA 35 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHH
Confidence 567899999999999966543
No 406
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=57.64 E-value=4.9 Score=32.64 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.+.-+++.|+.|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 56778999999999997653
No 407
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=57.58 E-value=4.9 Score=32.57 Aligned_cols=19 Identities=32% Similarity=0.258 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+.-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4667899999999999765
No 408
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=57.52 E-value=4.3 Score=34.77 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=23.1
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+-+++++||.-.-+|......+..++..+.
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~ 202 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 3447999999988887666677777776664
No 409
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=57.47 E-value=4.8 Score=32.51 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
.-+++.|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788999999999765
No 410
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=57.45 E-value=4.3 Score=34.52 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=22.8
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDML 228 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l 228 (326)
+.+-+++++||.-.-+|......+..++..+
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4556899999998877766666676666655
No 411
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=57.43 E-value=4.6 Score=32.66 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
.+.+.|+.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999764
No 412
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=57.39 E-value=7.2 Score=36.30 Aligned_cols=24 Identities=21% Similarity=0.004 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIM 94 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il 94 (326)
.|.-+++.|++|+|||...+-.+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHH
Confidence 455688899999999965544333
No 413
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=57.38 E-value=4.2 Score=33.06 Aligned_cols=19 Identities=32% Similarity=0.013 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+.-+.+.|++|||||...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556788999999999654
No 414
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=57.36 E-value=3.5 Score=34.97 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
+..+++.|++|||||..+
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345789999999999765
No 415
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=57.28 E-value=23 Score=33.81 Aligned_cols=93 Identities=13% Similarity=0.178 Sum_probs=55.8
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcC----CCcEEEEEEcCCCH--HHHHHHHhc-CCC---EEEeCcHHHHHHHhcCC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKG----INVRVVPIVGGMST--EKQERLLKA-RPE---LVVGTPGRLWELMSGGE 192 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~----~~~~v~~~~g~~~~--~~~~~~~~~-~~~---IlV~Tp~~l~~ll~~~~ 192 (326)
+.++||.|+++.-|..+++.+...... .+-.+..++|+... ......+.+ ..+ |+|+|- ++..|
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l~~G- 512 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LLTTG- 512 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TTTTT-
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hhhcC-
Confidence 458999999999999999999876431 12235667777543 111222322 123 666662 23333
Q ss_pred cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.++.++++||++..- .....+...+.+..
T Consensus 513 ---iDip~v~~Vi~~~~~-----~s~~~~~Q~iGR~~ 541 (590)
T 3h1t_A 513 ---VDAPTCKNVVLARVV-----NSMSEFKQIVGRGT 541 (590)
T ss_dssp ---CCCTTEEEEEEESCC-----CCHHHHHHHHTTSC
T ss_pred ---ccchheeEEEEEecC-----CChHHHHHHHhhhc
Confidence 778899999986553 12334444455444
No 416
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=57.22 E-value=4.8 Score=34.28 Aligned_cols=19 Identities=26% Similarity=0.029 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~ 90 (326)
+.-++++|+.|||||..+-
T Consensus 4 ~~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 4468899999999997653
No 417
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=57.10 E-value=4.9 Score=32.21 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
.+++.|+.|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4688999999999654
No 418
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=57.06 E-value=4.3 Score=35.16 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=22.8
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDML 228 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l 228 (326)
..+-++|++||.-.-+|......+..++..+
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l 189 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 4556899999998877766566666666655
No 419
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=56.97 E-value=4.2 Score=33.96 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=23.3
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+.+-+++++||.-.-+|......+..++..+.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~ 187 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 45568999999988777666666666666553
No 420
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=56.87 E-value=5 Score=35.41 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=21.8
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+-++|++||.=.-+|......+...+..+.
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~ 237 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVC 237 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 3457899999987777655666666666554
No 421
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=56.79 E-value=4.9 Score=32.56 Aligned_cols=16 Identities=31% Similarity=0.144 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999765
No 422
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=56.63 E-value=7.3 Score=32.37 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.+..+++.|+.|||||...-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34678999999999997653
No 423
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=56.33 E-value=7.3 Score=32.96 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|.-+.+.+|+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999665
No 424
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=56.32 E-value=4.1 Score=32.15 Aligned_cols=20 Identities=25% Similarity=0.096 Sum_probs=11.7
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.+.-+++.|+.|||||..+-
T Consensus 4 ~~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp -CCEEEEECCC----CHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678899999999997653
No 425
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=56.25 E-value=4.6 Score=34.77 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=21.9
Q ss_pred CeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 200 TLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+-++|++||.-.-+|......+..++..+.
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~ 194 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 568999999987777655666666666553
No 426
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=56.12 E-value=8.8 Score=40.14 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=52.6
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEE-EEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCC-e
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVV-PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT-L 201 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~-~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~-l 201 (326)
.++||.|+++.-+..++..+... ++++. .++|. ............+|||||... .+.+..| +++.+ +
T Consensus 310 ~~~LVF~~s~~~a~~l~~~L~~~----g~~~~~~lhg~--rr~l~~F~~G~~~VLVatas~-TdvlarG----IDip~~V 378 (1104)
T 4ddu_A 310 DGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF--EKNFEDFKVGKINILIGVQAY-YGKLTRG----VDLPERI 378 (1104)
T ss_dssp SSEEEEESSSHHHHHHHHHHHHT----TCCEEESSSSH--HHHHHHHHHTSCSEEEEETTT-HHHHCCS----CCCTTTC
T ss_pred CCEEEEECcHHHHHHHHHHHHhC----CCCeeeEecCc--HHHHHHHHCCCCCEEEEecCC-CCeeEec----CcCCCCC
Confidence 48999999999999998888775 77777 67763 222333334578999993111 1244444 77888 8
Q ss_pred eEEeecchhH
Q 020452 202 SFFVLDEADR 211 (326)
Q Consensus 202 ~~lViDEah~ 211 (326)
++||.=++-.
T Consensus 379 ~~VI~~d~P~ 388 (1104)
T 4ddu_A 379 KYVIFWGTPS 388 (1104)
T ss_dssp CEEEEESCCE
T ss_pred CEEEEECCCC
Confidence 8888766554
No 427
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=56.10 E-value=4.6 Score=34.49 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=23.4
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+-+++++||.-.-+|......+..++..+.
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 200 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 4568999999988887766677777776653
No 428
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=56.07 E-value=5.9 Score=32.57 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+..+++.|+.|||||...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp GCCEEEEEECTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3567899999999999765
No 429
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=55.82 E-value=4.7 Score=34.03 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=23.7
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+.+-+++++||.-.-+|......+..++..+.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 186 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 45568999999988887766667777766553
No 430
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=55.75 E-value=4.1 Score=34.47 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=22.6
Q ss_pred CeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 200 TLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+-+++++||.-.-+|......+..++..+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLM 186 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence 347899999998888777667777666553
No 431
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=55.71 E-value=20 Score=36.14 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=36.9
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh--cCCCEEEeC
Q 020452 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK--ARPELVVGT 180 (326)
Q Consensus 125 ~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~--~~~~IlV~T 180 (326)
.+||.|.|++-++.+.+.+... |+++..++|+....+...... ....|+|+|
T Consensus 434 pvLVft~s~~~se~Ls~~L~~~----gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIAT 487 (844)
T 1tf5_A 434 PVLVGTVAVETSELISKLLKNK----GIPHQVLNAKNHEREAQIIEEAGQKGAVTIAT 487 (844)
T ss_dssp CEEEEESCHHHHHHHHHHHHTT----TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEE
T ss_pred cEEEEECCHHHHHHHHHHHHHC----CCCEEEeeCCccHHHHHHHHHcCCCCeEEEeC
Confidence 5999999999998887776654 888889999864333321111 135789988
No 432
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=55.71 E-value=4.9 Score=34.46 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=22.9
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+-+++++||.-.-+|......+..++..+.
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 4568999999988787666666666666553
No 433
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=55.62 E-value=4.6 Score=40.72 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..+..+++.+|+|+|||..+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 35678999999999999765
No 434
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=55.61 E-value=4.8 Score=40.18 Aligned_cols=17 Identities=35% Similarity=0.241 Sum_probs=14.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999997764
No 435
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=55.53 E-value=5.6 Score=35.79 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=17.5
Q ss_pred HHHHHhcCCcE--EEEcCCCchHHHHH
Q 020452 65 IPAAAHQGKDI--IGAAETGSGKTLAF 89 (326)
Q Consensus 65 i~~~l~~g~dv--lv~apTGsGKT~~~ 89 (326)
+..++ +|.|. +..|.||||||++.
T Consensus 77 v~~~l-~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 77 VQSSL-DGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HGGGG-GTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhc-CCceeEEEEECCCCCCCcEec
Confidence 33443 67764 66899999999876
No 436
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=55.52 E-value=7.1 Score=34.29 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
|.-+.+.+|+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456778999999999654
No 437
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=55.19 E-value=6.8 Score=32.97 Aligned_cols=19 Identities=26% Similarity=0.163 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+..+++.||.|||||...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4457899999999999765
No 438
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=55.17 E-value=5.4 Score=37.77 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=31.6
Q ss_pred cccccccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRLG--FKEPTPIQKACIPAA-AHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g--~~~p~~~Q~~~i~~~-l~~g~dvlv~apTGsGKT~~~~ 90 (326)
+-.+|+++.-.+.....++..- +..+ ..+..+ +.-.+.+++.+|+|+|||..+-
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~-----~~~~~lg~~ip~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCG-----GGTTTTSCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhch-----hhhhhccCCCCceEEEECCCCCCHHHHHH
Confidence 3457999887777777776531 0000 011000 0113459999999999997653
No 439
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=55.15 E-value=5.6 Score=32.53 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-.++.+|+|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4578999999999764
No 440
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=55.02 E-value=4.6 Score=31.76 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.1
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLA 88 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~ 88 (326)
..|.-+.+.+|.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3556678899999999954
No 441
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=54.85 E-value=5.1 Score=34.12 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=20.8
Q ss_pred EEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 203 FFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 203 ~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
++++||.-.-+|......+..++..+.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~ 180 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALS 180 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 999999988887766677777776653
No 442
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=54.84 E-value=11 Score=34.12 Aligned_cols=21 Identities=19% Similarity=-0.004 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|.-+++.+++|+|||..++-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~ 93 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALA 93 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHH
Confidence 345678899999999965543
No 443
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=54.43 E-value=5.7 Score=31.52 Aligned_cols=15 Identities=40% Similarity=0.293 Sum_probs=12.9
Q ss_pred EEEEcCCCchHHHHH
Q 020452 75 IIGAAETGSGKTLAF 89 (326)
Q Consensus 75 vlv~apTGsGKT~~~ 89 (326)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999664
No 444
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=54.41 E-value=5.2 Score=34.11 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=23.3
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+-+++++||.-.-+|......+..++..+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 175 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLA 175 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 4568999999988887766677777776653
No 445
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=54.29 E-value=5.2 Score=34.34 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=24.2
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+.+-+++++||.-.-+|......+..++..+.
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 185 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 45568999999998888766677777776653
No 446
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=54.20 E-value=5.3 Score=34.47 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=25.2
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+.+-+++++||.-.-+|......+..++..+.
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 45568999999998888766777777777764
No 447
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=54.13 E-value=5.4 Score=34.10 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=23.8
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+.+-+++++||.-.-+|......+..++..+.
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 45568999999988887666667777766553
No 448
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=54.12 E-value=11 Score=38.50 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=39.8
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEE--------EEEEcCCCHHHHHHHH----h-cCCCEEEeCcHHHHHH
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRV--------VPIVGGMSTEKQERLL----K-ARPELVVGTPGRLWEL 187 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v--------~~~~g~~~~~~~~~~~----~-~~~~IlV~Tp~~l~~l 187 (326)
..+.++||.++++..+..+.+.+.......++++ ...+|+++..++...+ . ...+|||+|- .
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~ 703 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----V 703 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----c
Confidence 3456999999999999999999887522222333 3344555544433222 2 3568999993 2
Q ss_pred HhcCCcccccCCCeeEEeecch
Q 020452 188 MSGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 188 l~~~~~~~~~l~~l~~lViDEa 209 (326)
+..| +++..+++||.=+.
T Consensus 704 ~~eG----IDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 704 ADEG----IDIVQCNLVVLYEY 721 (936)
T ss_dssp ----------CCCCSEEEEESC
T ss_pred hhcC----CcchhCCEEEEeCC
Confidence 3333 66677777775433
No 449
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=53.92 E-value=1.6 Score=41.40 Aligned_cols=73 Identities=11% Similarity=0.267 Sum_probs=45.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHH----HHHHhcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ----ERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~----~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++++.-+..+++.+.. .+..+..++|+...... ........+|+|+|. .+..+ .++
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~----~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~~G----iDi 423 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTA----DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIARG----IDV 423 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTT----TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC--------------CCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhhcC----CCc
Confidence 34899999999999888877755 36778888887764332 222334678999995 34433 677
Q ss_pred CCeeEEeecc
Q 020452 199 HTLSFFVLDE 208 (326)
Q Consensus 199 ~~l~~lViDE 208 (326)
.++++||...
T Consensus 424 p~v~~VI~~~ 433 (508)
T 3fho_A 424 SQVNLVVNYD 433 (508)
T ss_dssp TTCCEEEC--
T ss_pred cCCCEEEEEC
Confidence 8888888543
No 450
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=53.90 E-value=6 Score=31.56 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=13.3
Q ss_pred EEEEcCCCchHHHHHH
Q 020452 75 IIGAAETGSGKTLAFG 90 (326)
Q Consensus 75 vlv~apTGsGKT~~~~ 90 (326)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999997653
No 451
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=53.64 E-value=5.6 Score=34.19 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=23.9
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+.+-+++++||.-.-+|......+..++..+.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 206 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 45568999999988887766667777776653
No 452
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=53.58 E-value=7.7 Score=34.56 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=17.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~i 93 (326)
.|.-+++.+|+|+|||..++..+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 45667999999999997654433
No 453
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=53.57 E-value=6.9 Score=34.34 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=13.8
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
.-+.+.+|+|+|||...
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 34678999999999764
No 454
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=53.47 E-value=5.9 Score=32.41 Aligned_cols=16 Identities=25% Similarity=0.115 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999765
No 455
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=53.36 E-value=6 Score=39.38 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.+.++++.||+|+|||...-
T Consensus 206 ~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHH
Confidence 35689999999999997653
No 456
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=53.08 E-value=7.3 Score=33.44 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=23.8
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+-+++++||.-.-+|......+..++..+.
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 211 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLR 211 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTC
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 3457999999998887766777777777664
No 457
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=52.86 E-value=6 Score=32.08 Aligned_cols=18 Identities=22% Similarity=-0.082 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
+.-+.+.|++|||||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345778999999999654
No 458
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=52.83 E-value=5.7 Score=34.46 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=22.5
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDML 228 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l 228 (326)
+.+-+++++||.-.-+|......+..++..+
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 207 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSL 207 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 3456899999998877766566666666555
No 459
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=52.73 E-value=7.2 Score=33.07 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=23.9
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+-+++++||.-.-+|......+..++..+.
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 190 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAMR 190 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 3457999999998888766777777777664
No 460
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=52.58 E-value=66 Score=30.29 Aligned_cols=18 Identities=33% Similarity=0.263 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
.+++++++|+|||..+.-
T Consensus 103 vI~ivG~~GvGKTTl~~k 120 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSK 120 (504)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477889999999977644
No 461
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=52.53 E-value=5.6 Score=39.60 Aligned_cols=17 Identities=35% Similarity=0.270 Sum_probs=14.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
++++.||+|+|||..+-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 69999999999997763
No 462
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=52.41 E-value=15 Score=36.85 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=37.2
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCC--------CcEEEEEEcCCCHHHHHHHH----h-cCCCEEEeCcHHHHHHHh
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGI--------NVRVVPIVGGMSTEKQERLL----K-ARPELVVGTPGRLWELMS 189 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~--------~~~v~~~~g~~~~~~~~~~~----~-~~~~IlV~Tp~~l~~ll~ 189 (326)
+.++||.++++..+..+.+.+....... |......+|+.+...+...+ . ...+|+|+|- .+.
T Consensus 631 ~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~-----~~~ 705 (797)
T 4a2q_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD 705 (797)
T ss_dssp SCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC-----C--
T ss_pred CCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC-----chh
Confidence 4589999999999999998887642211 22333344555544333222 2 3578999994 233
Q ss_pred cCCcccccCCCeeEEeecch
Q 020452 190 GGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEa 209 (326)
.| +++..+++||.=+.
T Consensus 706 ~G----IDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 706 EG----IDIVQCNLVVLYEY 721 (797)
T ss_dssp ---------CCCSEEEEESC
T ss_pred cC----CCchhCCEEEEeCC
Confidence 33 67788888886443
No 463
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=52.30 E-value=6.2 Score=31.65 Aligned_cols=16 Identities=31% Similarity=0.194 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-+.+.+++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999999765
No 464
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=51.56 E-value=6.8 Score=32.39 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999765
No 465
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=51.41 E-value=8 Score=34.87 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=14.7
Q ss_pred CCcEEE--EcCCCchHHHHH
Q 020452 72 GKDIIG--AAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv--~apTGsGKT~~~ 89 (326)
+..+++ .||.|+|||...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 346788 899999999765
No 466
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=50.63 E-value=13 Score=32.94 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+.+.+++|+|||.....
T Consensus 107 vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467889999999976543
No 467
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=50.63 E-value=7 Score=34.78 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
=.++.||+|+|||...-
T Consensus 25 ~~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34789999999998753
No 468
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=50.62 E-value=7.2 Score=31.89 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
+.-+.+.|+.|||||...
T Consensus 4 ~~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVA 21 (218)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345788999999999764
No 469
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=50.56 E-value=6.8 Score=39.45 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~ 90 (326)
.+.+++.||+|+|||+.+-
T Consensus 238 p~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999997763
No 470
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=50.55 E-value=11 Score=33.44 Aligned_cols=19 Identities=21% Similarity=-0.272 Sum_probs=15.1
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~ 92 (326)
-+++.+|+|+|||...+-.
T Consensus 30 iteI~G~pGsGKTtL~Lq~ 48 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTM 48 (333)
T ss_dssp EEEEEESSSSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5788999999999665443
No 471
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=50.54 E-value=13 Score=35.00 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~i 93 (326)
.|.-+++.|++|+|||...+-.+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a 263 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQA 263 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHH
Confidence 45668889999999996554333
No 472
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=50.29 E-value=7.2 Score=33.70 Aligned_cols=17 Identities=29% Similarity=0.210 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
-+++.|++|||||..+-
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997653
No 473
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=49.99 E-value=7.4 Score=33.94 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=12.9
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-+.+.|++|||||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567899999999654
No 474
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=49.36 E-value=6.8 Score=32.90 Aligned_cols=19 Identities=26% Similarity=0.074 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|.-+-+.||+|||||...
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4555678999999999765
No 475
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=49.33 E-value=6.5 Score=34.30 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|.-+.+.||+|+|||...
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35777889999999999654
No 476
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=49.31 E-value=14 Score=34.09 Aligned_cols=19 Identities=32% Similarity=0.205 Sum_probs=15.4
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~ 92 (326)
.+++.+++|+|||....-.
T Consensus 101 vI~ivG~~GvGKTTla~~L 119 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKL 119 (432)
T ss_dssp CEEEECCSSSSTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6888999999999776443
No 477
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=48.98 E-value=6.3 Score=39.93 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
..+++.||+|+|||..+-
T Consensus 589 ~~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEEBSCSSSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368999999999997653
No 478
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=48.97 E-value=6.9 Score=30.96 Aligned_cols=17 Identities=24% Similarity=0.220 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCchHHHH
Q 020452 72 GKDIIGAAETGSGKTLA 88 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~ 88 (326)
.-.+++.|++|+|||..
T Consensus 21 ~~ki~v~G~~~~GKSsl 37 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTI 37 (190)
T ss_dssp CEEEEEEECTTSSHHHH
T ss_pred ccEEEEECCCCCCHHHH
Confidence 34789999999999954
No 479
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=48.86 E-value=68 Score=25.85 Aligned_cols=61 Identities=10% Similarity=0.133 Sum_probs=40.2
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHH--HHHHhcCCCEEEeCcHHHHHHHhc
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ--ERLLKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
.++++++|...|.....+.+.++ +..+....++...... ... ..+++|+|+--+. ..++++
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~----~~~i~i~~~~l~~~v~~a~~~-~~~~dVIISRGgt-a~~lr~ 67 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEK----NFIPITKTASLTRASKIAFGL-QDEVDAIISRGAT-SDYIKK 67 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH----TCEEEEEECCHHHHHHHHHHH-TTTCSEEEEEHHH-HHHHHT
T ss_pred CcEEEEEccHHHHHHHHHHHhhh----CCceEEEECCHHHHHHHHHHh-cCCCeEEEECChH-HHHHHH
Confidence 48999999999998766666654 3355556665432222 223 5688999988766 556653
No 480
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=48.85 E-value=8.3 Score=31.20 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
|.-+.+.+|+|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 456788999999999654
No 481
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=48.03 E-value=12 Score=36.98 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=18.8
Q ss_pred HHHHHHhcCCcE--EEEcCCCchHHHHH
Q 020452 64 CIPAAAHQGKDI--IGAAETGSGKTLAF 89 (326)
Q Consensus 64 ~i~~~l~~g~dv--lv~apTGsGKT~~~ 89 (326)
.+..++ +|.|. +.-|.||||||.+.
T Consensus 454 ~v~~~~-~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSL-DGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHh-CCceEEEEccCCCCCchhhcc
Confidence 556665 77764 55799999999875
No 482
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=47.72 E-value=12 Score=34.08 Aligned_cols=20 Identities=20% Similarity=0.066 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|+-+++.||+|+|||...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35678899999999999654
No 483
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=47.70 E-value=4.6 Score=32.83 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=12.7
Q ss_pred EEEEcCCCchHHHHH
Q 020452 75 IIGAAETGSGKTLAF 89 (326)
Q Consensus 75 vlv~apTGsGKT~~~ 89 (326)
+++.|+.|||||...
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999654
No 484
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=47.20 E-value=6.3 Score=30.95 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCchHHHH
Q 020452 71 QGKDIIGAAETGSGKTLA 88 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~ 88 (326)
..-.+++.|++|+|||..
T Consensus 20 ~~~~i~v~G~~~~GKSsl 37 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTI 37 (181)
T ss_dssp -CEEEEEEEETTSSHHHH
T ss_pred ceeEEEEECCCCCCHHHH
Confidence 445899999999999954
No 485
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=46.96 E-value=9.3 Score=32.76 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=24.7
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+.+-+++++||.-.-+|......+..++..+.
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~ 175 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYG 175 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC
T ss_pred HhCCCEEEEECCccccCHHHHHHHHHHHHHhc
Confidence 34568999999988887766777777777765
No 486
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=46.89 E-value=15 Score=32.07 Aligned_cols=18 Identities=22% Similarity=0.023 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
|.-+-+.||+|||||...
T Consensus 80 g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345677899999999654
No 487
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=46.63 E-value=19 Score=40.10 Aligned_cols=27 Identities=22% Similarity=0.020 Sum_probs=21.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.|.++++.+|+|+|||..+...+.+..
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999987765555443
No 488
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=46.63 E-value=15 Score=34.84 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=20.9
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..|.-+.+.+|+|+|||......++.-+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678899999999999977655434444
No 489
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=46.58 E-value=39 Score=24.47 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=35.6
Q ss_pred CeEEEEEeCcHHHHHHHHH-HHHHHHcCCCcE-EEEEEcCCCHHHHHHHHhcCCCEEEeCcHH
Q 020452 123 HLRALIITPTRELALQVTD-HLKEVAKGINVR-VVPIVGGMSTEKQERLLKARPELVVGTPGR 183 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~-~l~~~~~~~~~~-v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~ 183 (326)
..+++++|++---...+.. .+++.++..++. +..-..+ ..+.... ..+.|++|+||.-
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~--~~~~~~~-~~~~DlIi~t~~l 77 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCS--VGEAKGL-ASNYDIVVASNHL 77 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC--HHHHHHH-GGGCSEEEEETTT
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEee--HHHHhhc-cCCCcEEEECCch
Confidence 4579999988755555555 777777766765 4333322 2222222 3468999999854
No 490
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=46.57 E-value=10 Score=34.26 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-+.+.+|+|+|||...
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4678999999999764
No 491
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=46.24 E-value=8.2 Score=34.03 Aligned_cols=19 Identities=21% Similarity=-0.052 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|.-+.+.||+|||||...
T Consensus 89 ~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCchHHHHH
Confidence 3445678999999999654
No 492
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=46.18 E-value=8.3 Score=33.16 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
++.+.||+|+|||...
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999543
No 493
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=45.88 E-value=9.6 Score=30.92 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
.+.+.|+.|||||.+.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999765
No 494
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=45.72 E-value=9.3 Score=32.17 Aligned_cols=16 Identities=31% Similarity=0.142 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-+.+.|+.|||||...
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999765
No 495
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=45.36 E-value=9.7 Score=30.56 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
-+.+.++.|||||...-
T Consensus 4 ~i~i~G~~GsGKst~~~ 20 (208)
T 3ake_A 4 IVTIDGPSASGKSSVAR 20 (208)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999997653
No 496
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=45.34 E-value=9.9 Score=32.02 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
....+.+.+|+|||||...-
T Consensus 8 ~~~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34578889999999997653
No 497
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=45.34 E-value=8.7 Score=31.89 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|.-+.+.|+.|+|||...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CCEEEEEECSTTSCHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3455788999999999643
No 498
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=45.34 E-value=35 Score=33.52 Aligned_cols=74 Identities=24% Similarity=0.274 Sum_probs=50.8
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcC-----------------------------CCcEEEEEEcCCCHHHHHHHH---
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKG-----------------------------INVRVVPIVGGMSTEKQERLL--- 170 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~-----------------------------~~~~v~~~~g~~~~~~~~~~~--- 170 (326)
+.++||.+|++.-+..++..+...... ....+..++|+....++....
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 358999999999999999888775332 012478899999877664433
Q ss_pred -hcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEe
Q 020452 171 -KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205 (326)
Q Consensus 171 -~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lV 205 (326)
....+|+|+|.- +..+ .++..+.+||
T Consensus 317 ~~g~~~vlvaT~~-----l~~G----vdip~~~~VI 343 (720)
T 2zj8_A 317 RKGIIKAVVATPT-----LSAG----INTPAFRVII 343 (720)
T ss_dssp HTTSSCEEEECST-----TGGG----CCCCBSEEEE
T ss_pred HCCCCeEEEECcH-----hhcc----CCCCceEEEE
Confidence 246789999942 2222 5667776544
No 499
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=45.16 E-value=13 Score=30.55 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
.+++.||+||||+..+
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999998654
No 500
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=45.09 E-value=8.5 Score=30.93 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..+..+.+.|++|+|||...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 35667899999999999643
Done!