BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020453
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 73
L C++C + + C H +CK CI R+ K CP+C + K I +D TL
Sbjct: 12 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 71
Query: 74 QDVVDRFIEG 83
QD+V + + G
Sbjct: 72 QDIVYKLVPG 81
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 73
L C++C + + C H +CK CI R+ K CP+C + K I +D TL
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75
Query: 74 QDVVDRFIEG 83
QD+V + + G
Sbjct: 76 QDIVYKLVPG 85
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 73
L C++C + + C H +CK CI R+ K CP+C + K I +D TL
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75
Query: 74 QDVVDRFIEG 83
QD+V + + G
Sbjct: 76 QDIVYKLVPG 85
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 36.6 bits (83), Expect = 0.018, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 26 CMICQALLFECSKCTPCSHVYCKACISRF----KDCPLC 60
C IC+ L + + T C H +CK+CI R CP C
Sbjct: 18 CSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKC 56
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 35.4 bits (80), Expect = 0.046, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 26 CMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK----IEADTTLQD 75
C IC S PC H +C CI+R+ CPLC +E IE+D+ D
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIESDSEFGD 65
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKIEADTTLQDVV 77
L C+IC E + C+H +C CI+ + +CP+C DI+ L + +
Sbjct: 52 NELQCIICSEYFIE-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNXI 110
Query: 78 DRFI 81
++ +
Sbjct: 111 NKMV 114
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISR-FK----DCPLCGADIEK---IEADTTLQD 75
C+ CQ L+F T C H CK C+ R F+ CP C D+ + ++ + LQ
Sbjct: 53 FQCICCQELVFR-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQT 111
Query: 76 VVDRFIEGHA 85
V+++ G+
Sbjct: 112 VLNQLFPGYG 121
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKIEADTTLQDVV 77
L C+IC E + C+H +C CI+ + +CP+C DI+ L + +
Sbjct: 52 NELQCIICSEYFIE-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCI 110
Query: 78 DRFI 81
++ +
Sbjct: 111 NKMV 114
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKIEADTTLQDVV 77
L C+IC E + C+H +C CI+ + +CP+C DI+ L + +
Sbjct: 63 NELQCIICSEYFIE-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCI 121
Query: 78 DRFI 81
++ +
Sbjct: 122 NKMV 125
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 26 CMICQALLFECSKCTPCSHVYCKACISR-FK----DCPLCGADIEK---IEADTTLQDVV 77
C+ CQ L+++ T C H CK C+ R FK CP C D+ + + + LQ ++
Sbjct: 81 CVCCQELVYQ-PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLL 139
Query: 78 DRFIEGHAR 86
D F G+++
Sbjct: 140 DLFFPGYSK 148
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD-------CPLCGADIEK--IEADTTLQ 74
L C IC L+ E T C H++CK C+ + + CPLC DI K ++ T
Sbjct: 22 LECPICLELIKE-PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFS 80
Query: 75 DVVDRFIE 82
+V+ ++
Sbjct: 81 QLVEELLK 88
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 26 CMICQALLFECSKCTPCSH-VYCKACISRFKDCPLCGADIEKIE 68
CM+C + C PC H V C++C ++ + CP+C + +E ++
Sbjct: 21 CMVCCEEEINSTFC-PCGHTVCCESCAAQLQSCPVCRSRVEHVQ 63
>pdb|3GW4|A Chain A, Crystal Structure Of Uncharacterized Protein From
Deinococcus Radiodurans. Northeast Structural Genomics
Consortium Target Drr162b.
pdb|3GW4|B Chain B, Crystal Structure Of Uncharacterized Protein From
Deinococcus Radiodurans. Northeast Structural Genomics
Consortium Target Drr162b
Length = 203
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDL 226
L +G R G+ DAA F + E L LP D L S + ++ + + GDL
Sbjct: 68 ALHQVGXVERXAGNWDAARRCFLEERELLASLPEDPL----AASANAYEVATVALHFGDL 123
Query: 227 QAARSYYVRSL 237
AR Y +SL
Sbjct: 124 AGARQEYEKSL 134
>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
Representative Structure At Ph 7.5, 30 C, In The
Presence Of Zinc
Length = 56
Score = 31.6 bits (70), Expect = 0.59, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 24 LSCMICQALLFECSKCTPCSHVYCKACI-SRFKDCPLCGA 62
L C CQA +C K PC H C C+ + CP+C A
Sbjct: 7 LRCQQCQAEA-KCPKLLPCLHTLCSGCLEASGMQCPICQA 45
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 46 YCKACISRF--KDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGE 103
Y + +R CP CG +EK D LQD+ + F EG R + + ++ G
Sbjct: 107 YLRVLYARIGKAHCPECGRPLEKKSIDEILQDLFNSFKEG----SRIYILAPVATEKKGT 162
Query: 104 NKKVIYEDVS 113
KK I E +S
Sbjct: 163 FKKEIEEFIS 172
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 23 PLSCMICQALLFECSKCTPCSHVYCKAC-ISRFKDCPLC 60
P C IC+ F+ T C H +C++C + F+ P C
Sbjct: 15 PFRCFICRQA-FQNPVVTKCRHYFCESCALEHFRATPRC 52
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 38 KCTPCSHVYCKACISRFKD-----CPLCGADIEKIEADTTLQDVVDRF 80
K PC H+ C +C++ +++ CP C +I+ E VVD F
Sbjct: 346 KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP-----IVVDPF 388
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 38 KCTPCSHVYCKACISRFKD-----CPLCGADIEKIEADTTLQDVVDRF 80
K PC H+ C +C++ +++ CP C +I+ E VVD F
Sbjct: 348 KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP-----IVVDPF 390
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 38 KCTPCSHVYCKACISRFKD-----CPLCGADIEKIEADTTLQDVVDRF 80
K PC H+ C +C++ +++ CP C +I+ E VVD F
Sbjct: 348 KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP-----IVVDPF 390
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 38 KCTPCSHVYCKACISRFKD-----CPLCGADIEKIEADTTLQDVVDRF 80
K PC H+ C +C++ +++ CP C +I+ E VVD F
Sbjct: 346 KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP-----IVVDPF 388
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 25 SCMICQALLFECSKCTPCSHVYCKACISRFKD-------CPLC 60
SC +C L E C H +CKACI+R+ + CP+C
Sbjct: 17 SCSVCLEYLKE-PVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 38 KCTPCSHVYCKACISRFKD-----CPLCGADIEKIE 68
K PC H+ C +C++ +++ CP C +I+ E
Sbjct: 352 KIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTE 387
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 29.3 bits (64), Expect = 2.8, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 38 KCTPCSHVYCKACISRFKD-----CPLCGADIEKIE 68
K PC H+ C +C++ +++ CP C +I+ E
Sbjct: 38 KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 73
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 29.3 bits (64), Expect = 2.8, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 38 KCTPCSHVYCKACISRFKD-----CPLCGADIEKIE 68
K PC H+ C +C++ +++ CP C +I+ E
Sbjct: 40 KIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTE 75
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 38 KCTPCSHVYCKACISRFKD-----CPLCGADIEKIE 68
K PC H+ C +C++ +++ CP C +I+ E
Sbjct: 41 KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 76
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRFK-----------DCPLCGA--DIEKIEAD 70
++C IC LL E C H C+ACI+ CP+CG E ++A+
Sbjct: 13 VTCPICLELLTE-PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN 71
Query: 71 TTLQDVVD 78
L ++V+
Sbjct: 72 QHLANIVE 79
>pdb|2HO4|A Chain A, Crystal Structure Of Protein From Mouse Mm.236127
pdb|2HO4|B Chain B, Crystal Structure Of Protein From Mouse Mm.236127
Length = 259
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 262 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLP 321
A + D++ ++ ED AV G QEA+KRL + ++ R ++T +K+ L +L
Sbjct: 9 AVLVDLNGTLHIEDAAVPGAQEALKRLRATSVX-------VRFVTNTTKETKKDLLERLK 61
Query: 322 KF 323
K
Sbjct: 62 KL 63
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 41 PCSHVYCKACISRFKD----CPLC 60
PC+H +C+ CI ++ D CP+C
Sbjct: 31 PCAHSFCQKCIDKWSDRHRNCPIC 54
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 179 GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYY----- 233
GD A VA+F +++ E + TLS +++G+ +Y GD A Y+
Sbjct: 62 GDCRAGVAFFQAAIQ-------AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114
Query: 234 -VRSLNVRRDAVKRHSNVPSQV 254
+S+N R K N+ + +
Sbjct: 115 LAKSMNDRLGEAKSSGNLGNTL 136
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 26 CMICQALLFECSKCTPCSHVYCKACISR 53
C IC L E + TPC H +CKACI +
Sbjct: 28 CPICLMALREAVQ-TPCGHRFCKACIIK 54
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 22 GPLS----CMICQALLFECSKCTPCSHVYCKACISR 53
GPL C IC L E + TPC H +CKACI +
Sbjct: 1 GPLGSKYECPICLMALREAVQ-TPCGHRFCKACIIK 35
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 13 GYDAQSFKIG-PLSCMICQALL-------FECSKCTPCSHVYCKACISRFKDCPLCGADI 64
G+D Q F SC CQ LL + C +C +H K C+ R C G D
Sbjct: 518 GHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAH---KECLGRVPPCGRHGQDF 574
>pdb|3Q15|A Chain A, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|B Chain B, Crystal Structure Of Raph Complexed With Spo0f
Length = 378
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 14/117 (11%)
Query: 171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAAR 230
+ + M ++ + +++ P+ + I +L V D K+Y L
Sbjct: 147 VAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLE 206
Query: 231 SYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVAD-VDRSIGNEDVAVDGFQEAIK 286
+ +++++ D +A+SL +A+ DRS G++ +AV+ FQ+A K
Sbjct: 207 AALELAMDIQNDRF------------IAISLLNIANSYDRS-GDDQMAVEHFQKAAK 250
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 41 PCSHVYCKACISRF----KDCPLCGADIE 65
PC H++ + C+ ++ K CP+C DIE
Sbjct: 34 PCMHLFHQVCVDQWLITNKKCPICRVDIE 62
>pdb|1GM6|A Chain A, 3-D Structure Of A Salivary Lipocalin From Boar
Length = 175
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 174 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL-KYYG 223
C +GD VAY+ ++ L+++ D I+H + V+ +K L ++YG
Sbjct: 74 VCDKVGDGVYTVAYYGENKFRLLEVNYSDYVILHLVDVNGDKTFQLMEFYG 124
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 179 GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 238
G+ + A++ D+VE ++ D +S S +IG+ + GDL+ YY +SL
Sbjct: 52 GEYETAISTLNDAVEQGREMRAD----YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107
Query: 239 VRRDA 243
R A
Sbjct: 108 EHRTA 112
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 237 LNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 294
L VRRD + H+++ SQVL S A + D +G V V F E L S L+
Sbjct: 559 LRVRRDTPQLHASIESQVLPSPDSRALLLRRDHPLGGM-VQVYNFSEETVMLPSHVLR 615
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 13 GYDAQSFKIG-PLSCMICQALL-------FECSKCTPCSHVYCKACISRFKDCPLCGADI 64
G+D Q F SC CQ LL + C +C +H K C+ R C G D
Sbjct: 346 GHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAH---KECLGRVPPCGRHGQDF 402
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 28.1 bits (61), Expect = 7.4, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
Query: 24 LSCMICQALLFECSKCTPCSHVYCKACIS------RFKD----CPLC 60
++C IC LL E C+H +C+ACI+ R D CP+C
Sbjct: 20 VTCPICLELLKE-PVSADCNHSFCRACITLNYESNRNTDGKGNCPVC 65
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 28.1 bits (61), Expect = 7.4, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 41 PCSHV-YCKACISRFKDCPLC 60
PC H C C+ F+ CP+C
Sbjct: 32 PCRHTCLCDGCVKYFQQCPMC 52
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 28.1 bits (61), Expect = 7.6, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 24 LSCMICQALLFECSKCTPCSHVYCKACI-----SRFKDCPLC 60
L C IC +L C H +C CI S K+CP C
Sbjct: 35 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTC 76
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 118
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 25 SCMICQALLFECSKCTPCSHVYCKACISR 53
C IC L E + TPC H +CKACI +
Sbjct: 20 ECPICLMALREAVQ-TPCGHRFCKACIIK 47
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 42 CSHVYCKACISRF----KDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSH 91
CSH YC CI +F CP C + E D ++D ++ R+H
Sbjct: 41 CSHNYCSLCIRKFLSYKTQCPTCCVTVT--EPDLKNNRILDELVKS-LNFARNH 91
>pdb|1JM7|B Chain B, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 117
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 24/102 (23%)
Query: 33 LFECSKCT----------PCSHVYCKACISRF--KDCPLC--GADIEKIEADTTLQDVVD 78
L CS+CT C H++C C+S CP+C A I+ ++ + L D
Sbjct: 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQL----D 77
Query: 79 RFIEGHARIKR-SHTN--SDKEEDEAGENKKVIYEDVSMERG 117
I+ ++++ H N SD +ED+ +K ++ D ++G
Sbjct: 78 SMIQLCSKLRNLLHDNELSDLKEDKP---RKSLFNDAGNKKG 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,966,477
Number of Sequences: 62578
Number of extensions: 342384
Number of successful extensions: 1097
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1061
Number of HSP's gapped (non-prelim): 68
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)