Query 020453
Match_columns 326
No_of_seqs 236 out of 2606
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 02:29:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15227 zf-C3HC4_4: zinc fing 99.3 6E-13 1.3E-17 81.5 0.8 34 26-60 1-42 (42)
2 KOG4367 Predicted Zn-finger pr 99.2 2E-11 4.4E-16 108.2 5.4 62 159-220 224-296 (699)
3 KOG1840 Kinesin light chain [C 99.0 7.9E-09 1.7E-13 97.2 15.3 183 127-326 209-393 (508)
4 smart00504 Ubox Modified RING 99.0 2.5E-10 5.5E-15 77.2 3.0 56 23-79 1-62 (63)
5 TIGR00599 rad18 DNA repair pro 98.9 4.4E-10 9.6E-15 101.9 3.6 60 22-82 25-90 (397)
6 PLN03208 E3 ubiquitin-protein 98.8 1.2E-09 2.6E-14 88.5 2.3 43 22-65 17-79 (193)
7 PF04564 U-box: U-box domain; 98.8 2.6E-09 5.7E-14 74.2 2.7 61 22-83 3-70 (73)
8 KOG0287 Postreplication repair 98.8 1.7E-09 3.6E-14 93.3 1.9 60 22-82 22-87 (442)
9 KOG2177 Predicted E3 ubiquitin 98.8 4.7E-09 1E-13 94.9 5.0 64 20-84 10-77 (386)
10 PF14835 zf-RING_6: zf-RING of 98.7 1E-08 2.2E-13 67.0 3.2 55 22-77 6-65 (65)
11 PF13923 zf-C3HC4_2: Zinc fing 98.7 2.6E-09 5.7E-14 64.6 -0.3 34 26-60 1-39 (39)
12 KOG0317 Predicted E3 ubiquitin 98.7 7.6E-09 1.7E-13 87.9 2.1 46 19-65 235-284 (293)
13 PHA02929 N1R/p28-like protein; 98.7 5.1E-09 1.1E-13 88.6 0.4 50 21-70 172-232 (238)
14 PF13424 TPR_12: Tetratricopep 98.6 2.9E-07 6.2E-12 64.9 8.9 76 208-290 3-78 (78)
15 PF13920 zf-C3HC4_3: Zinc fing 98.6 9E-09 1.9E-13 65.9 0.7 43 22-65 1-48 (50)
16 PF00097 zf-C3HC4: Zinc finger 98.6 8.1E-09 1.8E-13 63.2 -0.1 34 26-60 1-41 (41)
17 PF14634 zf-RING_5: zinc-RING 98.6 3.2E-08 7E-13 61.4 2.4 38 25-62 1-44 (44)
18 KOG1840 Kinesin light chain [C 98.6 8.6E-07 1.9E-11 83.7 13.0 140 173-323 207-348 (508)
19 PF13639 zf-RING_2: Ring finge 98.6 6.6E-09 1.4E-13 64.7 -0.8 37 25-61 2-44 (44)
20 KOG0320 Predicted E3 ubiquitin 98.5 3.6E-08 7.8E-13 77.8 2.3 43 22-65 130-178 (187)
21 PHA02926 zinc finger-like prot 98.5 3.8E-08 8.3E-13 80.6 1.2 50 21-70 168-235 (242)
22 COG5432 RAD18 RING-finger-cont 98.5 7.2E-08 1.6E-12 81.6 2.4 59 23-82 25-89 (391)
23 KOG0823 Predicted E3 ubiquitin 98.5 5.4E-08 1.2E-12 80.4 1.5 45 20-65 44-95 (230)
24 PF13445 zf-RING_UBOX: RING-ty 98.4 5.9E-08 1.3E-12 59.3 0.3 28 26-55 1-32 (43)
25 cd00162 RING RING-finger (Real 98.3 3E-07 6.4E-12 57.2 1.1 38 25-63 1-44 (45)
26 smart00184 RING Ring finger. E 98.2 4.6E-07 1E-11 54.3 1.2 34 26-60 1-39 (39)
27 KOG2660 Locus-specific chromos 98.2 3.1E-07 6.8E-12 79.7 0.5 63 22-84 14-86 (331)
28 KOG4626 O-linked N-acetylgluco 98.2 6.6E-06 1.4E-10 77.4 8.7 70 159-239 348-417 (966)
29 COG5574 PEX10 RING-finger-cont 98.1 1.2E-06 2.7E-11 73.7 1.5 44 21-65 213-262 (271)
30 TIGR00570 cdk7 CDK-activating 98.0 2.3E-06 5E-11 74.8 2.5 44 22-65 2-54 (309)
31 PF13424 TPR_12: Tetratricopep 98.0 2.6E-06 5.6E-11 59.9 2.2 69 256-326 3-72 (78)
32 KOG2164 Predicted E3 ubiquitin 98.0 1.8E-06 3.8E-11 79.3 0.8 42 23-65 186-236 (513)
33 KOG0311 Predicted E3 ubiquitin 97.8 2.1E-06 4.6E-11 75.1 -2.1 61 22-82 42-110 (381)
34 KOG4159 Predicted E3 ubiquitin 97.7 1.8E-05 3.9E-10 72.3 2.8 63 21-84 82-155 (398)
35 KOG0804 Cytoplasmic Zn-finger 97.7 0.00011 2.4E-09 66.5 7.5 44 21-64 173-221 (493)
36 PF14938 SNAP: Soluble NSF att 97.5 0.0008 1.7E-08 59.7 10.6 137 173-325 43-180 (282)
37 KOG0978 E3 ubiquitin ligase in 97.5 1.6E-05 3.5E-10 76.6 -0.5 43 22-65 642-689 (698)
38 PF12678 zf-rbx1: RING-H2 zinc 97.5 2.6E-05 5.7E-10 54.0 0.6 37 25-61 21-73 (73)
39 COG5152 Uncharacterized conser 97.5 5.2E-05 1.1E-09 61.0 1.5 53 23-76 196-253 (259)
40 KOG4626 O-linked N-acetylgluco 97.5 0.001 2.2E-08 63.2 10.0 64 210-287 354-417 (966)
41 KOG0824 Predicted E3 ubiquitin 97.4 8.9E-05 1.9E-09 63.8 2.1 43 23-66 7-54 (324)
42 KOG1130 Predicted G-alpha GTPa 97.4 0.00034 7.3E-09 63.2 5.7 126 184-324 174-299 (639)
43 PF13374 TPR_10: Tetratricopep 97.4 0.00048 1E-08 41.6 4.8 38 258-295 2-41 (42)
44 KOG1813 Predicted E3 ubiquitin 97.2 0.00024 5.3E-09 61.0 2.7 51 23-74 241-296 (313)
45 KOG0802 E3 ubiquitin ligase [P 97.2 9.5E-05 2.1E-09 71.6 -0.1 43 22-64 290-340 (543)
46 KOG4185 Predicted E3 ubiquitin 97.1 0.026 5.6E-07 50.5 14.7 58 23-80 3-77 (296)
47 COG5222 Uncharacterized conser 97.0 0.001 2.2E-08 57.1 4.3 60 22-82 273-341 (427)
48 CHL00033 ycf3 photosystem I as 97.0 0.043 9.4E-07 44.4 13.9 112 171-297 41-153 (168)
49 KOG2879 Predicted E3 ubiquitin 96.9 0.00063 1.4E-08 57.9 2.9 46 20-66 236-288 (298)
50 TIGR00990 3a0801s09 mitochondr 96.9 0.013 2.7E-07 58.1 12.5 99 212-325 469-567 (615)
51 COG5243 HRD1 HRD ubiquitin lig 96.9 0.00028 6.1E-09 62.3 0.6 49 17-65 281-345 (491)
52 PF14938 SNAP: Soluble NSF att 96.9 0.07 1.5E-06 47.3 15.7 96 179-287 88-184 (282)
53 PF13414 TPR_11: TPR repeat; P 96.8 0.0085 1.8E-07 40.6 7.4 63 211-287 4-67 (69)
54 KOG1130 Predicted G-alpha GTPa 96.7 0.012 2.6E-07 53.5 9.5 127 179-321 209-336 (639)
55 KOG4628 Predicted E3 ubiquitin 96.7 0.00058 1.3E-08 61.0 1.2 41 24-65 230-278 (348)
56 TIGR00990 3a0801s09 mitochondr 96.7 0.02 4.3E-07 56.7 11.9 120 172-324 372-491 (615)
57 CHL00033 ycf3 photosystem I as 96.7 0.016 3.5E-07 47.0 9.2 68 209-287 34-101 (168)
58 PF11789 zf-Nse: Zinc-finger o 96.6 0.0011 2.3E-08 43.3 1.3 37 22-59 10-53 (57)
59 PF13176 TPR_7: Tetratricopept 96.5 0.0075 1.6E-07 35.3 4.8 31 260-290 1-31 (36)
60 PRK02603 photosystem I assembl 96.5 0.091 2E-06 42.8 12.9 113 170-297 40-153 (172)
61 KOG0297 TNF receptor-associate 96.4 0.0025 5.5E-08 59.0 3.2 43 22-65 20-67 (391)
62 KOG1039 Predicted E3 ubiquitin 96.4 0.0015 3.2E-08 58.7 1.5 45 20-65 158-221 (344)
63 PF14447 Prok-RING_4: Prokaryo 96.3 0.002 4.3E-08 41.0 1.5 43 22-65 6-50 (55)
64 COG5540 RING-finger-containing 96.2 0.0017 3.6E-08 56.0 0.9 43 23-65 323-372 (374)
65 PRK15359 type III secretion sy 96.1 0.011 2.4E-07 46.8 5.2 89 215-325 29-117 (144)
66 PF12861 zf-Apc11: Anaphase-pr 96.1 0.0026 5.6E-08 44.7 1.3 28 38-65 48-82 (85)
67 TIGR02521 type_IV_pilW type IV 96.1 0.11 2.5E-06 43.3 11.6 28 260-287 171-198 (234)
68 KOG1173 Anaphase-promoting com 96.0 0.0085 1.8E-07 56.4 4.7 100 211-325 415-514 (611)
69 PRK02603 photosystem I assembl 95.9 0.071 1.5E-06 43.4 9.3 67 210-287 35-101 (172)
70 KOG1173 Anaphase-promoting com 95.8 0.061 1.3E-06 50.9 9.1 97 173-287 422-518 (611)
71 KOG4275 Predicted E3 ubiquitin 95.8 0.0022 4.8E-08 55.0 -0.4 42 23-65 300-342 (350)
72 PF13414 TPR_11: TPR repeat; P 95.7 0.011 2.5E-07 39.9 3.0 61 258-326 3-64 (69)
73 KOG4172 Predicted E3 ubiquitin 95.5 0.0013 2.7E-08 41.4 -2.0 41 24-65 8-54 (62)
74 PF13176 TPR_7: Tetratricopept 95.4 0.034 7.3E-07 32.4 4.1 30 213-242 2-31 (36)
75 TIGR02521 type_IV_pilW type IV 95.4 0.095 2.1E-06 43.8 8.4 90 216-325 71-160 (234)
76 KOG0825 PHD Zn-finger protein 95.3 0.0013 2.7E-08 63.7 -3.7 45 22-66 122-172 (1134)
77 PF13432 TPR_16: Tetratricopep 95.2 0.21 4.6E-06 33.1 7.9 58 216-287 3-60 (65)
78 PF13374 TPR_10: Tetratricopep 95.1 0.067 1.4E-06 31.8 4.9 38 210-247 2-39 (42)
79 PRK11189 lipoprotein NlpI; Pro 95.0 0.13 2.8E-06 45.9 8.5 62 211-286 99-160 (296)
80 KOG1002 Nucleotide excision re 95.0 0.0057 1.2E-07 56.8 -0.4 43 22-65 535-586 (791)
81 KOG1785 Tyrosine kinase negati 95.0 0.0099 2.1E-07 53.3 1.0 43 23-66 369-417 (563)
82 PF00515 TPR_1: Tetratricopept 94.8 0.086 1.9E-06 30.0 4.6 31 258-288 1-31 (34)
83 PRK09782 bacteriophage N4 rece 94.8 0.64 1.4E-05 48.5 13.7 92 212-325 611-702 (987)
84 cd00189 TPR Tetratricopeptide 94.8 0.097 2.1E-06 36.2 5.8 89 214-324 4-92 (100)
85 KOG0553 TPR repeat-containing 94.7 0.11 2.4E-06 45.4 6.8 80 208-287 79-178 (304)
86 PRK15179 Vi polysaccharide bio 94.6 0.38 8.3E-06 48.1 11.2 124 168-324 89-212 (694)
87 KOG1126 DNA-binding cell divis 94.6 1.2 2.6E-05 43.1 13.9 57 215-285 494-550 (638)
88 TIGR02552 LcrH_SycD type III s 94.5 0.11 2.3E-06 40.2 5.9 22 215-236 22-43 (135)
89 KOG3161 Predicted E3 ubiquitin 94.5 0.012 2.6E-07 56.0 0.3 56 22-77 10-76 (861)
90 PLN03098 LPA1 LOW PSII ACCUMUL 94.4 0.34 7.3E-06 45.2 9.5 71 206-287 71-141 (453)
91 PLN03088 SGT1, suppressor of 94.4 0.13 2.8E-06 47.3 6.9 25 261-285 73-97 (356)
92 PRK11447 cellulose synthase su 94.3 1.6 3.5E-05 46.7 15.9 104 212-323 387-518 (1157)
93 PRK11788 tetratricopeptide rep 94.3 1.8 4E-05 39.8 14.6 26 261-286 252-277 (389)
94 COG3063 PilF Tfp pilus assembl 94.3 0.1 2.2E-06 44.0 5.4 91 215-325 74-164 (250)
95 PRK15174 Vi polysaccharide exp 94.2 1.2 2.5E-05 44.6 13.8 91 212-324 286-376 (656)
96 KOG2003 TPR repeat-containing 94.2 0.35 7.7E-06 44.8 9.1 64 210-287 524-587 (840)
97 KOG4265 Predicted E3 ubiquitin 94.1 0.023 4.9E-07 50.6 1.2 43 23-66 290-337 (349)
98 KOG3002 Zn finger protein [Gen 93.8 0.074 1.6E-06 47.2 3.9 60 18-80 43-105 (299)
99 KOG4739 Uncharacterized protei 93.7 0.047 1E-06 46.1 2.4 60 23-82 3-65 (233)
100 PRK11788 tetratricopeptide rep 93.7 0.86 1.9E-05 42.0 11.1 27 212-238 143-169 (389)
101 PRK15363 pathogenicity island 93.5 0.45 9.8E-06 37.9 7.6 56 216-285 41-96 (157)
102 PF13181 TPR_8: Tetratricopept 93.5 0.24 5.1E-06 28.0 4.5 30 259-288 2-31 (34)
103 KOG1125 TPR repeat-containing 93.4 0.29 6.3E-06 46.5 7.2 77 214-290 434-530 (579)
104 PRK15359 type III secretion sy 93.3 0.68 1.5E-05 36.5 8.4 91 172-287 31-121 (144)
105 TIGR03302 OM_YfiO outer membra 93.3 1.7 3.6E-05 37.0 11.5 168 126-324 42-227 (235)
106 KOG1645 RING-finger-containing 93.2 0.045 9.7E-07 49.5 1.6 43 23-65 4-56 (463)
107 KOG4555 TPR repeat-containing 93.2 0.22 4.8E-06 38.3 5.0 55 220-288 53-107 (175)
108 KOG0826 Predicted E3 ubiquitin 93.1 0.043 9.4E-07 48.2 1.3 51 12-63 287-344 (357)
109 TIGR02917 PEP_TPR_lipo putativ 93.0 1.6 3.5E-05 44.4 12.9 57 260-325 806-862 (899)
110 KOG0543 FKBP-type peptidyl-pro 92.9 0.36 7.9E-06 44.1 6.9 76 210-285 208-284 (397)
111 PRK10370 formate-dependent nit 92.9 0.27 5.8E-06 41.1 5.8 92 212-325 75-169 (198)
112 PF07719 TPR_2: Tetratricopept 92.9 0.34 7.3E-06 27.2 4.6 30 259-288 2-31 (34)
113 TIGR02795 tol_pal_ybgF tol-pal 92.8 0.88 1.9E-05 33.7 8.1 61 215-286 7-67 (119)
114 PF12895 Apc3: Anaphase-promot 92.6 0.084 1.8E-06 37.3 2.1 83 223-326 2-84 (84)
115 KOG1814 Predicted E3 ubiquitin 92.6 0.06 1.3E-06 48.8 1.5 55 22-78 183-251 (445)
116 KOG1734 Predicted RING-contain 92.6 0.05 1.1E-06 46.4 0.9 56 8-65 211-281 (328)
117 PF10952 DUF2753: Protein of u 92.5 3.7 8E-05 31.2 12.2 103 215-319 6-112 (140)
118 PF14570 zf-RING_4: RING/Ubox 92.5 0.083 1.8E-06 32.9 1.6 39 26-64 1-47 (48)
119 PF13429 TPR_15: Tetratricopep 92.4 1.1 2.3E-05 39.5 9.2 107 212-326 148-274 (280)
120 KOG3800 Predicted E3 ubiquitin 92.3 0.054 1.2E-06 46.8 0.9 41 25-65 2-51 (300)
121 KOG4692 Predicted E3 ubiquitin 92.3 0.065 1.4E-06 47.5 1.3 46 19-65 418-467 (489)
122 PRK11447 cellulose synthase su 92.1 0.48 1E-05 50.6 7.8 29 211-239 304-332 (1157)
123 PF12862 Apc5: Anaphase-promot 91.8 1.8 3.9E-05 31.3 8.3 65 222-291 10-74 (94)
124 PF00515 TPR_1: Tetratricopept 91.6 0.63 1.4E-05 26.2 4.7 30 211-240 2-31 (34)
125 cd02682 MIT_AAA_Arch MIT: doma 91.6 1.5 3.3E-05 30.3 7.1 43 256-298 4-47 (75)
126 KOG2817 Predicted E3 ubiquitin 91.4 0.11 2.4E-06 47.0 1.8 43 22-64 333-384 (394)
127 PF13371 TPR_9: Tetratricopept 91.3 1.1 2.4E-05 30.2 6.6 57 217-287 2-58 (73)
128 cd00189 TPR Tetratricopeptide 91.2 1.1 2.3E-05 30.7 6.6 61 212-286 36-96 (100)
129 KOG1001 Helicase-like transcri 91.2 0.1 2.2E-06 51.7 1.5 40 24-65 455-500 (674)
130 KOG1155 Anaphase-promoting com 91.0 1.7 3.6E-05 40.7 8.9 66 211-290 433-498 (559)
131 KOG3039 Uncharacterized conser 91.0 0.14 3.1E-06 43.1 1.9 44 22-65 220-270 (303)
132 KOG2376 Signal recognition par 90.8 5.5 0.00012 38.4 12.3 72 215-286 180-252 (652)
133 PLN03088 SGT1, suppressor of 90.8 1.4 3E-05 40.5 8.5 52 177-239 14-65 (356)
134 PRK11189 lipoprotein NlpI; Pro 90.7 2.6 5.5E-05 37.6 10.0 92 170-287 103-194 (296)
135 PF10516 SHNi-TPR: SHNi-TPR; 90.7 0.7 1.5E-05 27.3 4.2 34 212-245 3-36 (38)
136 PF09976 TPR_21: Tetratricopep 90.4 0.73 1.6E-05 36.2 5.5 92 215-326 53-144 (145)
137 PRK10803 tol-pal system protei 90.3 0.73 1.6E-05 40.4 5.9 87 222-324 155-241 (263)
138 PF06552 TOM20_plant: Plant sp 90.3 1.8 3.8E-05 35.4 7.5 79 230-314 4-83 (186)
139 PRK15174 Vi polysaccharide exp 90.2 1.5 3.3E-05 43.8 8.8 58 259-324 285-342 (656)
140 PF05290 Baculo_IE-1: Baculovi 90.1 0.13 2.8E-06 39.2 0.9 44 22-66 79-133 (140)
141 PRK04841 transcriptional regul 90.1 4.9 0.00011 41.7 12.8 103 177-290 503-605 (903)
142 PF07719 TPR_2: Tetratricopept 90.0 1.1 2.3E-05 25.0 4.7 28 212-239 3-30 (34)
143 KOG3617 WD40 and TPR repeat-co 90.0 11 0.00023 38.2 13.8 78 213-291 915-1000(1416)
144 KOG1571 Predicted E3 ubiquitin 90.0 0.13 2.8E-06 46.0 0.9 43 22-65 304-347 (355)
145 TIGR02917 PEP_TPR_lipo putativ 89.8 7.4 0.00016 39.6 13.8 22 215-236 674-695 (899)
146 KOG1941 Acetylcholine receptor 89.7 5.6 0.00012 36.2 10.8 74 210-291 246-324 (518)
147 KOG1129 TPR repeat-containing 89.6 0.85 1.8E-05 40.7 5.6 26 213-238 226-251 (478)
148 PF07191 zinc-ribbons_6: zinc- 89.6 0.049 1.1E-06 36.7 -1.5 38 23-65 1-41 (70)
149 KOG1129 TPR repeat-containing 89.4 5.8 0.00013 35.6 10.6 23 264-286 296-318 (478)
150 PF13181 TPR_8: Tetratricopept 89.2 1.3 2.8E-05 24.8 4.6 30 212-241 3-32 (34)
151 KOG1125 TPR repeat-containing 89.1 1.2 2.7E-05 42.5 6.6 65 212-283 466-530 (579)
152 PRK10370 formate-dependent nit 89.0 7.6 0.00016 32.3 10.9 99 165-288 73-174 (198)
153 KOG1586 Protein required for f 88.8 9.7 0.00021 32.6 11.0 28 214-241 117-145 (288)
154 COG3063 PilF Tfp pilus assembl 88.7 0.47 1E-05 40.2 3.3 54 223-288 116-169 (250)
155 PRK04841 transcriptional regul 88.6 7.1 0.00015 40.5 12.6 72 212-291 493-564 (903)
156 KOG1585 Protein required for f 88.5 2.3 5E-05 36.5 7.2 62 220-290 81-142 (308)
157 PRK15179 Vi polysaccharide bio 88.4 12 0.00026 37.7 13.4 104 160-288 115-218 (694)
158 PRK12370 invasion protein regu 88.3 1.5 3.2E-05 42.9 7.1 60 213-286 341-400 (553)
159 PF04641 Rtf2: Rtf2 RING-finge 88.2 0.36 7.8E-06 42.3 2.4 44 21-65 111-161 (260)
160 PF10516 SHNi-TPR: SHNi-TPR; 88.2 1.3 2.8E-05 26.1 4.1 32 260-291 3-34 (38)
161 PRK15363 pathogenicity island 88.2 12 0.00026 29.9 10.8 105 171-303 41-145 (157)
162 KOG2932 E3 ubiquitin ligase in 88.1 0.25 5.4E-06 43.2 1.3 41 25-65 92-134 (389)
163 KOG0553 TPR repeat-containing 88.1 1.6 3.5E-05 38.4 6.3 97 215-326 79-175 (304)
164 KOG0548 Molecular co-chaperone 88.1 2.8 6E-05 39.8 8.2 106 207-320 295-412 (539)
165 PRK12370 invasion protein regu 88.0 4.9 0.00011 39.3 10.4 28 212-239 374-401 (553)
166 PRK10803 tol-pal system protei 87.8 6.8 0.00015 34.3 10.2 65 212-287 182-246 (263)
167 PRK09782 bacteriophage N4 rece 87.7 15 0.00033 38.6 14.1 63 212-288 645-707 (987)
168 PF11793 FANCL_C: FANCL C-term 87.6 0.11 2.4E-06 35.4 -0.9 43 23-65 2-66 (70)
169 TIGR02795 tol_pal_ybgF tol-pal 87.6 9.2 0.0002 28.0 10.8 93 176-287 13-105 (119)
170 PF09976 TPR_21: Tetratricopep 87.3 5.6 0.00012 31.1 8.7 90 173-285 56-145 (145)
171 KOG2002 TPR-containing nuclear 87.1 2.3 5E-05 43.2 7.4 59 264-326 420-478 (1018)
172 PF12688 TPR_5: Tetratrico pep 87.1 5.6 0.00012 30.3 8.1 61 215-286 6-66 (120)
173 PF12895 Apc3: Anaphase-promot 86.7 3.1 6.6E-05 29.1 6.2 57 213-284 28-84 (84)
174 COG5236 Uncharacterized conser 86.6 0.29 6.3E-06 43.4 0.9 51 14-65 52-108 (493)
175 TIGR03302 OM_YfiO outer membra 86.3 7.6 0.00016 32.9 9.7 64 214-288 37-100 (235)
176 PF02891 zf-MIZ: MIZ/SP-RING z 86.3 0.3 6.5E-06 30.9 0.6 41 23-63 2-50 (50)
177 PF13432 TPR_16: Tetratricopep 85.8 0.46 1E-05 31.4 1.4 54 264-325 3-56 (65)
178 COG5010 TadD Flp pilus assembl 85.7 4.1 8.9E-05 35.2 7.3 22 260-281 170-191 (257)
179 PLN03098 LPA1 LOW PSII ACCUMUL 85.2 0.96 2.1E-05 42.3 3.6 64 255-326 72-138 (453)
180 KOG1126 DNA-binding cell divis 85.1 1.2 2.6E-05 43.1 4.3 107 211-326 422-549 (638)
181 PF13428 TPR_14: Tetratricopep 85.0 2.5 5.4E-05 25.5 4.4 38 260-303 3-40 (44)
182 KOG1100 Predicted E3 ubiquitin 83.9 0.52 1.1E-05 39.6 1.2 39 26-65 161-200 (207)
183 KOG2003 TPR repeat-containing 83.5 1.7 3.7E-05 40.5 4.4 32 258-289 524-555 (840)
184 KOG4362 Transcriptional regula 83.4 0.36 7.7E-06 47.2 0.0 43 22-65 20-69 (684)
185 KOG1941 Acetylcholine receptor 83.1 2.1 4.5E-05 38.9 4.6 70 215-288 167-236 (518)
186 PF07800 DUF1644: Protein of u 82.9 0.87 1.9E-05 36.0 2.0 21 22-43 1-21 (162)
187 KOG2002 TPR-containing nuclear 82.8 16 0.00035 37.5 11.0 74 210-287 452-525 (1018)
188 PF13371 TPR_9: Tetratricopept 82.6 1.3 2.8E-05 29.9 2.6 52 265-324 2-53 (73)
189 smart00028 TPR Tetratricopepti 82.3 2.4 5.2E-05 22.2 3.3 28 260-287 3-30 (34)
190 PF13429 TPR_15: Tetratricopep 82.0 8.8 0.00019 33.6 8.4 61 215-289 219-279 (280)
191 KOG2076 RNA polymerase III tra 81.7 8.6 0.00019 38.9 8.7 90 211-321 415-504 (895)
192 COG5219 Uncharacterized conser 81.3 0.29 6.3E-06 49.1 -1.4 44 22-65 1468-1523(1525)
193 PF06552 TOM20_plant: Plant sp 81.1 14 0.00031 30.2 8.4 74 226-302 44-118 (186)
194 TIGR02552 LcrH_SycD type III s 81.0 22 0.00047 26.9 13.3 94 170-288 22-115 (135)
195 PF04212 MIT: MIT (microtubule 80.7 7.3 0.00016 26.2 5.8 35 257-291 4-38 (69)
196 PF09986 DUF2225: Uncharacteri 80.6 23 0.0005 29.9 10.0 68 219-287 127-194 (214)
197 KOG0827 Predicted E3 ubiquitin 80.6 0.6 1.3E-05 42.2 0.4 41 24-65 5-56 (465)
198 KOG3617 WD40 and TPR repeat-co 80.5 11 0.00023 38.2 8.7 112 214-325 804-937 (1416)
199 smart00744 RINGv The RING-vari 80.4 0.83 1.8E-05 28.7 0.9 36 25-61 1-49 (49)
200 TIGR00540 hemY_coli hemY prote 80.3 7.7 0.00017 36.3 7.8 67 212-291 337-403 (409)
201 PHA03096 p28-like protein; Pro 79.5 0.65 1.4E-05 41.0 0.3 32 24-55 179-217 (284)
202 cd05804 StaR_like StaR_like; a 79.5 2.9 6.2E-05 38.0 4.5 61 212-286 116-176 (355)
203 PF14559 TPR_19: Tetratricopep 79.5 5.9 0.00013 26.0 5.1 47 222-282 3-49 (68)
204 COG2956 Predicted N-acetylgluc 79.3 11 0.00023 34.0 7.6 52 232-289 229-280 (389)
205 PF13174 TPR_6: Tetratricopept 79.2 4.2 9.2E-05 22.2 3.6 26 261-286 3-28 (33)
206 KOG0828 Predicted E3 ubiquitin 79.1 0.64 1.4E-05 43.3 0.1 26 40-65 604-634 (636)
207 KOG2114 Vacuolar assembly/sort 78.3 1.4 3E-05 44.0 2.1 46 20-65 837-883 (933)
208 KOG1493 Anaphase-promoting com 78.2 0.65 1.4E-05 31.7 -0.1 29 37-65 45-81 (84)
209 KOG0548 Molecular co-chaperone 77.8 9.9 0.00021 36.3 7.4 57 210-280 358-414 (539)
210 KOG4234 TPR repeat-containing 77.8 41 0.00089 28.3 10.1 75 213-287 98-197 (271)
211 KOG1812 Predicted E3 ubiquitin 77.7 1.8 3.8E-05 40.2 2.5 34 22-55 145-181 (384)
212 COG5220 TFB3 Cdk activating ki 77.1 0.48 1.1E-05 39.8 -1.2 44 22-65 9-64 (314)
213 KOG0543 FKBP-type peptidyl-pro 77.1 26 0.00055 32.4 9.6 119 174-314 217-339 (397)
214 KOG0547 Translocase of outer m 76.1 7.9 0.00017 36.6 6.2 64 207-284 112-175 (606)
215 PRK10747 putative protoheme IX 75.6 14 0.00031 34.4 8.1 60 214-288 332-391 (398)
216 PRK14720 transcript cleavage f 75.2 11 0.00023 39.0 7.4 62 212-288 118-179 (906)
217 PF10602 RPN7: 26S proteasome 74.7 39 0.00084 27.6 9.5 76 204-290 30-105 (177)
218 COG5010 TadD Flp pilus assembl 74.2 24 0.00053 30.5 8.2 58 216-287 106-163 (257)
219 cd02683 MIT_1 MIT: domain cont 74.1 11 0.00024 26.1 5.2 40 258-297 6-46 (77)
220 PF10367 Vps39_2: Vacuolar sor 74.1 1.6 3.5E-05 32.2 1.1 33 21-53 76-109 (109)
221 PRK10153 DNA-binding transcrip 73.7 12 0.00025 36.4 7.0 57 216-287 426-482 (517)
222 COG1516 FliS Flagellin-specifi 73.3 18 0.0004 27.9 6.6 60 256-317 29-91 (132)
223 TIGR00540 hemY_coli hemY prote 73.2 28 0.0006 32.6 9.4 103 216-325 269-395 (409)
224 PRK10049 pgaA outer membrane p 73.2 19 0.0004 36.9 8.8 38 261-304 119-156 (765)
225 COG4235 Cytochrome c biogenesi 72.9 21 0.00047 31.5 7.8 67 214-287 160-256 (287)
226 COG5109 Uncharacterized conser 71.7 1.9 4.1E-05 38.0 1.0 42 22-63 335-385 (396)
227 KOG1155 Anaphase-promoting com 71.6 55 0.0012 31.1 10.4 68 211-285 467-534 (559)
228 PF04100 Vps53_N: Vps53-like, 71.5 58 0.0013 30.3 10.8 95 198-304 69-166 (383)
229 cd02656 MIT MIT: domain contai 71.5 18 0.0004 24.6 5.9 38 258-295 6-44 (75)
230 KOG0547 Translocase of outer m 71.3 60 0.0013 31.0 10.6 50 235-291 521-570 (606)
231 PRK14574 hmsH outer membrane p 70.2 22 0.00048 36.6 8.4 17 264-280 142-158 (822)
232 smart00745 MIT Microtubule Int 70.1 32 0.00069 23.5 7.7 39 258-296 8-47 (77)
233 KOG2796 Uncharacterized conser 69.9 21 0.00046 31.2 6.9 29 212-240 214-242 (366)
234 cd05804 StaR_like StaR_like; a 69.9 50 0.0011 29.7 10.2 64 212-285 150-213 (355)
235 PF10571 UPF0547: Uncharacteri 69.9 2.7 5.8E-05 22.5 1.0 8 25-32 2-9 (26)
236 PRK10049 pgaA outer membrane p 69.8 36 0.00079 34.8 10.0 66 215-285 315-386 (765)
237 cd02681 MIT_calpain7_1 MIT: do 69.4 16 0.00035 25.3 5.1 35 257-291 5-39 (76)
238 PF04136 Sec34: Sec34-like fam 68.3 28 0.00061 27.8 7.1 18 275-292 69-86 (157)
239 PF10272 Tmpp129: Putative tra 68.0 2.4 5.2E-05 38.6 1.0 22 44-65 313-351 (358)
240 PF10602 RPN7: 26S proteasome 67.8 32 0.00069 28.1 7.5 32 256-287 34-65 (177)
241 PF13431 TPR_17: Tetratricopep 67.3 10 0.00022 21.5 3.2 21 258-278 13-33 (34)
242 cd02678 MIT_VPS4 MIT: domain c 67.2 26 0.00056 24.0 5.8 38 258-295 6-44 (75)
243 PF13428 TPR_14: Tetratricopep 67.1 17 0.00037 21.7 4.4 27 213-239 4-30 (44)
244 PF14559 TPR_19: Tetratricopep 66.7 4.6 9.9E-05 26.6 2.0 46 271-324 4-49 (68)
245 KOG1586 Protein required for f 66.1 21 0.00044 30.7 6.0 23 269-291 158-180 (288)
246 KOG0298 DEAD box-containing he 65.9 1.8 3.9E-05 45.3 -0.3 46 22-67 1152-1201(1394)
247 KOG0994 Extracellular matrix g 65.0 71 0.0015 33.9 10.4 22 267-288 1534-1555(1758)
248 PRK05685 fliS flagellar protei 64.8 51 0.0011 25.5 7.7 52 265-318 42-96 (132)
249 PF02561 FliS: Flagellar prote 64.8 46 0.00099 25.2 7.4 51 265-317 36-89 (122)
250 KOG3970 Predicted E3 ubiquitin 64.2 4.7 0.0001 33.8 1.8 42 24-65 51-105 (299)
251 PF10475 DUF2450: Protein of u 63.8 81 0.0018 28.0 9.9 22 270-291 139-160 (291)
252 PF08631 SPO22: Meiosis protei 63.2 88 0.0019 27.5 10.0 63 222-290 5-68 (278)
253 cd02679 MIT_spastin MIT: domai 62.7 28 0.00061 24.3 5.3 36 256-291 6-41 (79)
254 PF12968 DUF3856: Domain of Un 62.6 68 0.0015 24.5 7.9 100 223-324 22-124 (144)
255 COG5194 APC11 Component of SCF 61.1 3.6 7.7E-05 28.4 0.5 25 41-65 53-81 (88)
256 PF09986 DUF2225: Uncharacteri 60.7 97 0.0021 26.2 9.3 91 224-323 91-188 (214)
257 KOG1585 Protein required for f 60.6 1.2E+02 0.0025 26.5 10.9 101 177-291 83-183 (308)
258 KOG2077 JNK/SAPK-associated pr 60.5 1.7E+02 0.0036 28.6 11.4 56 258-318 395-454 (832)
259 KOG2169 Zn-finger transcriptio 60.3 6.1 0.00013 39.3 2.3 61 22-82 305-375 (636)
260 TIGR03504 FimV_Cterm FimV C-te 60.0 18 0.00039 22.1 3.5 23 263-285 4-26 (44)
261 PF03704 BTAD: Bacterial trans 59.7 78 0.0017 24.3 10.8 76 208-297 60-136 (146)
262 COG3071 HemY Uncharacterized e 59.7 29 0.00062 32.0 6.1 61 213-288 331-391 (400)
263 KOG1174 Anaphase-promoting com 59.2 22 0.00048 33.1 5.4 28 260-287 473-500 (564)
264 PF07721 TPR_4: Tetratricopept 59.2 17 0.00038 19.0 3.0 23 260-282 3-25 (26)
265 KOG3039 Uncharacterized conser 59.2 4 8.6E-05 34.7 0.6 33 22-55 42-74 (303)
266 KOG1839 Uncharacterized protei 58.3 15 0.00033 38.8 4.7 111 205-323 968-1080(1236)
267 KOG4648 Uncharacterized conser 56.7 1E+02 0.0022 28.2 8.9 84 214-301 101-202 (536)
268 PF10579 Rapsyn_N: Rapsyn N-te 56.1 67 0.0015 22.4 6.5 60 221-291 17-76 (80)
269 PRK06975 bifunctional uroporph 56.0 2.3E+02 0.005 28.6 13.3 41 251-291 416-457 (656)
270 PF12862 Apc5: Anaphase-promot 55.7 73 0.0016 22.7 10.1 53 208-268 39-91 (94)
271 cd02680 MIT_calpain7_2 MIT: do 55.7 30 0.00065 23.9 4.4 30 261-290 9-38 (75)
272 cd00021 BBOX B-Box-type zinc f 55.4 0.43 9.3E-06 28.0 -4.3 13 160-172 2-15 (39)
273 KOG0545 Aryl-hydrocarbon recep 55.4 45 0.00097 29.0 6.2 40 260-299 180-221 (329)
274 PF10497 zf-4CXXC_R1: Zinc-fin 55.3 7.9 0.00017 28.7 1.6 23 43-65 37-72 (105)
275 PRK14720 transcript cleavage f 54.9 1.7E+02 0.0038 30.5 11.4 59 169-239 120-178 (906)
276 PF00643 zf-B_box: B-box zinc 54.1 0.42 9.2E-06 28.7 -4.5 28 159-186 4-41 (42)
277 PF05883 Baculo_RING: Baculovi 53.6 4.3 9.4E-05 31.3 -0.0 32 23-54 26-65 (134)
278 PF09295 ChAPs: ChAPs (Chs5p-A 53.3 88 0.0019 29.2 8.5 25 260-284 236-260 (395)
279 KOG1940 Zn-finger protein [Gen 53.2 7.4 0.00016 34.1 1.3 41 22-62 157-204 (276)
280 cd02684 MIT_2 MIT: domain cont 53.1 58 0.0013 22.3 5.6 33 259-291 7-39 (75)
281 COG1729 Uncharacterized protei 52.8 72 0.0016 27.9 7.3 67 211-288 179-245 (262)
282 COG5175 MOT2 Transcriptional r 52.4 7 0.00015 34.9 1.1 44 22-65 13-64 (480)
283 KOG4445 Uncharacterized conser 51.9 2.8 6E-05 36.7 -1.4 32 23-54 115-148 (368)
284 PRK10866 outer membrane biogen 51.7 1.2E+02 0.0026 26.1 8.6 59 219-288 41-99 (243)
285 KOG4555 TPR repeat-containing 51.3 28 0.0006 27.1 4.0 30 259-288 44-73 (175)
286 PRK10747 putative protoheme IX 51.2 2.1E+02 0.0045 26.6 12.8 101 216-325 269-386 (398)
287 PF06844 DUF1244: Protein of u 50.9 4.8 0.0001 26.7 -0.1 11 45-55 11-21 (68)
288 PF03704 BTAD: Bacterial trans 50.4 40 0.00086 26.1 5.1 94 222-323 18-119 (146)
289 cd02677 MIT_SNX15 MIT: domain 50.4 44 0.00096 23.0 4.6 33 259-291 7-39 (75)
290 COG3813 Uncharacterized protei 50.3 8.4 0.00018 26.0 0.9 25 42-66 27-53 (84)
291 KOG3616 Selective LIM binding 49.7 77 0.0017 32.0 7.6 33 208-240 704-736 (1636)
292 PF06906 DUF1272: Protein of u 49.6 9 0.00019 24.6 1.0 41 25-65 7-52 (57)
293 KOG2034 Vacuolar sorting prote 49.6 5.5 0.00012 40.2 0.0 33 22-54 816-849 (911)
294 KOG3785 Uncharacterized conser 48.7 69 0.0015 29.4 6.6 76 223-319 35-110 (557)
295 KOG1815 Predicted E3 ubiquitin 48.5 8.4 0.00018 36.6 1.0 33 22-55 69-102 (444)
296 COG2976 Uncharacterized protei 48.3 1.6E+02 0.0035 24.6 8.7 24 265-288 166-189 (207)
297 PHA02825 LAP/PHD finger-like p 47.1 12 0.00026 29.7 1.5 44 20-65 5-59 (162)
298 cd00350 rubredoxin_like Rubred 46.8 16 0.00036 20.6 1.7 12 53-64 16-27 (33)
299 KOG2076 RNA polymerase III tra 46.5 35 0.00075 34.8 4.9 31 292-324 235-265 (895)
300 smart00101 14_3_3 14-3-3 homol 46.4 79 0.0017 27.4 6.6 61 226-291 144-208 (244)
301 KOG2930 SCF ubiquitin ligase, 46.4 6.9 0.00015 28.5 0.1 23 41-63 80-106 (114)
302 KOG3899 Uncharacterized conser 46.3 6.4 0.00014 34.4 -0.1 24 42-65 325-365 (381)
303 PF12968 DUF3856: Domain of Un 46.0 1.4E+02 0.0029 23.0 10.1 74 215-291 60-133 (144)
304 cd07661 BAR_ICA69 The Bin/Amph 45.3 70 0.0015 26.6 5.7 37 265-301 98-136 (204)
305 TIGR00208 fliS flagellar biosy 45.0 1.4E+02 0.003 22.8 7.7 51 265-317 38-91 (124)
306 KOG2796 Uncharacterized conser 44.7 2.2E+02 0.0048 25.1 9.1 51 232-288 192-242 (366)
307 PF12854 PPR_1: PPR repeat 43.7 58 0.0013 18.2 3.7 27 258-284 7-33 (34)
308 KOG2041 WD40 repeat protein [G 43.7 1.7E+02 0.0036 29.6 8.8 59 207-265 793-866 (1189)
309 KOG1839 Uncharacterized protei 43.6 1.3E+02 0.0027 32.4 8.5 78 208-291 1055-1132(1236)
310 PF13041 PPR_2: PPR repeat fam 43.2 61 0.0013 19.7 4.2 27 259-285 4-30 (50)
311 KOG4340 Uncharacterized conser 43.1 2.5E+02 0.0055 25.3 9.6 23 263-285 183-205 (459)
312 cd00065 FYVE FYVE domain; Zinc 42.8 15 0.00033 23.4 1.3 30 25-54 4-36 (57)
313 KOG1128 Uncharacterized conser 42.1 2.4E+02 0.0052 28.5 9.7 68 219-286 494-581 (777)
314 PF01535 PPR: PPR repeat; Int 42.0 48 0.001 17.3 3.2 26 260-285 2-27 (31)
315 KOG3842 Adaptor protein Pellin 42.0 12 0.00026 33.2 0.9 24 41-65 377-414 (429)
316 COG1729 Uncharacterized protei 41.3 1.3E+02 0.0027 26.4 7.0 81 223-319 154-234 (262)
317 PF03854 zf-P11: P-11 zinc fin 40.8 9.6 0.00021 23.6 0.1 39 24-65 3-46 (50)
318 cd07660 BAR_Arfaptin The Bin/A 39.5 2.3E+02 0.0049 23.8 8.4 33 265-297 97-129 (201)
319 PF13812 PPR_3: Pentatricopept 39.5 63 0.0014 17.3 3.6 27 260-286 3-29 (34)
320 PF08631 SPO22: Meiosis protei 39.2 2.7E+02 0.0058 24.4 14.5 107 178-291 6-113 (278)
321 PF01485 IBR: IBR domain; Int 39.1 9.2 0.0002 24.9 -0.2 31 24-54 19-58 (64)
322 KOG2908 26S proteasome regulat 38.6 3.1E+02 0.0068 25.1 9.4 63 221-291 86-148 (380)
323 PHA02862 5L protein; Provision 38.3 13 0.00028 29.1 0.5 39 25-65 4-53 (156)
324 KOG2789 Putative Zn-finger pro 37.8 17 0.00037 33.3 1.2 31 24-54 75-106 (482)
325 KOG1118 Lysophosphatidic acid 37.8 1.9E+02 0.0042 25.9 7.5 55 225-291 177-231 (366)
326 smart00336 BBOX B-Box-type zin 37.6 1.4 3.1E-05 26.1 -4.0 14 159-172 4-18 (42)
327 COG4700 Uncharacterized protei 37.5 2.3E+02 0.005 23.7 7.5 23 216-238 95-117 (251)
328 PRK04023 DNA polymerase II lar 37.3 38 0.00082 35.3 3.6 59 22-81 625-695 (1121)
329 KOG3726 Uncharacterized conser 36.3 18 0.00039 35.7 1.2 39 23-62 654-697 (717)
330 PF12688 TPR_5: Tetratrico pep 35.4 2E+02 0.0043 21.8 10.4 91 176-285 12-102 (120)
331 KOG2180 Late Golgi protein sor 34.7 5E+02 0.011 26.3 10.7 23 269-291 143-165 (793)
332 smart00064 FYVE Protein presen 34.7 24 0.00053 23.4 1.4 32 23-54 10-44 (68)
333 KOG1156 N-terminal acetyltrans 34.4 1.1E+02 0.0025 30.2 6.1 35 268-302 78-113 (700)
334 KOG1952 Transcription factor N 34.4 17 0.00038 36.7 0.8 12 303-314 920-931 (950)
335 KOG1464 COP9 signalosome, subu 34.1 3.4E+02 0.0073 24.1 9.8 49 198-249 56-104 (440)
336 PF13834 DUF4193: Domain of un 33.8 13 0.00028 27.0 -0.1 28 22-50 69-98 (99)
337 PF04710 Pellino: Pellino; In 33.0 14 0.00031 33.9 0.0 10 23-32 328-337 (416)
338 KOG3616 Selective LIM binding 33.0 2.4E+02 0.0052 28.8 8.1 75 213-291 664-739 (1636)
339 KOG2376 Signal recognition par 32.6 3.2E+02 0.0069 27.0 8.7 32 260-291 177-208 (652)
340 KOG1428 Inhibitor of type V ad 32.6 45 0.00097 36.4 3.3 43 23-65 3486-3544(3738)
341 PF05605 zf-Di19: Drought indu 32.5 19 0.00042 22.8 0.6 34 22-63 1-40 (54)
342 TIGR00756 PPR pentatricopeptid 32.0 85 0.0018 16.6 3.7 25 261-285 3-27 (35)
343 PF12569 NARP1: NMDA receptor- 31.7 2E+02 0.0044 28.0 7.5 62 212-287 196-257 (517)
344 KOG4657 Uncharacterized conser 31.3 2.1E+02 0.0046 24.3 6.4 16 272-287 145-160 (246)
345 PF12761 End3: Actin cytoskele 31.2 2.4E+02 0.0051 23.5 6.7 20 225-244 129-148 (195)
346 PF11817 Foie-gras_1: Foie gra 31.0 2.9E+02 0.0064 23.7 7.9 29 262-290 182-210 (247)
347 PLN03218 maturation of RBCL 1; 29.9 7.3E+02 0.016 26.8 11.8 130 173-325 550-709 (1060)
348 smart00502 BBC B-Box C-termina 29.8 2.3E+02 0.0049 20.8 9.3 29 274-302 84-112 (127)
349 KOG0825 PHD Zn-finger protein 29.5 15 0.00033 36.7 -0.4 43 22-65 95-154 (1134)
350 COG2178 Predicted RNA-binding 29.5 3.4E+02 0.0073 22.7 7.9 13 276-288 80-92 (204)
351 smart00647 IBR In Between Ring 29.4 16 0.00035 23.7 -0.2 14 41-54 45-58 (64)
352 PRK10866 outer membrane biogen 29.4 2.5E+02 0.0053 24.2 7.1 68 202-280 167-234 (243)
353 COG3492 Uncharacterized protei 29.1 18 0.0004 25.6 -0.0 11 45-55 42-52 (104)
354 PF04910 Tcf25: Transcriptiona 29.0 3.3E+02 0.0072 25.0 8.2 60 225-291 9-73 (360)
355 COG2976 Uncharacterized protei 28.9 3.5E+02 0.0076 22.7 9.2 16 222-237 101-116 (207)
356 PF04733 Coatomer_E: Coatomer 28.5 1E+02 0.0022 27.4 4.6 40 259-304 202-241 (290)
357 PF00244 14-3-3: 14-3-3 protei 28.5 2.7E+02 0.0059 23.8 7.1 58 226-288 142-199 (236)
358 KOG3268 Predicted E3 ubiquitin 28.0 23 0.0005 28.6 0.4 25 41-65 189-228 (234)
359 PF04781 DUF627: Protein of un 28.0 2.6E+02 0.0057 20.9 6.9 67 235-304 14-84 (111)
360 PF13525 YfiO: Outer membrane 27.8 3.5E+02 0.0075 22.3 8.6 60 216-286 11-70 (203)
361 PF13719 zinc_ribbon_5: zinc-r 27.4 23 0.0005 20.6 0.2 10 24-33 3-12 (37)
362 PRK04778 septation ring format 26.9 6.2E+02 0.013 24.9 11.4 52 240-291 153-210 (569)
363 PF09295 ChAPs: ChAPs (Chs5p-A 26.9 1.5E+02 0.0032 27.8 5.5 22 264-285 206-227 (395)
364 PRK14890 putative Zn-ribbon RN 26.4 1.4E+02 0.003 19.6 3.6 31 22-62 24-56 (59)
365 KOG0550 Molecular chaperone (D 26.4 96 0.0021 29.1 4.0 62 216-287 255-316 (486)
366 PF11207 DUF2989: Protein of u 26.2 2.1E+02 0.0045 24.0 5.7 55 260-319 143-197 (203)
367 PF14853 Fis1_TPR_C: Fis1 C-te 26.2 1.8E+02 0.0039 18.4 4.4 26 261-286 4-29 (53)
368 PRK15331 chaperone protein Sic 26.0 1.5E+02 0.0032 24.0 4.6 57 216-286 77-133 (165)
369 KOG3799 Rab3 effector RIM1 and 26.0 24 0.00053 27.1 0.2 40 22-65 64-118 (169)
370 COG2956 Predicted N-acetylgluc 25.6 5.2E+02 0.011 23.6 14.4 24 215-238 219-242 (389)
371 PF12569 NARP1: NMDA receptor- 25.5 6.4E+02 0.014 24.6 12.7 33 261-293 308-340 (517)
372 KOG4162 Predicted calmodulin-b 25.2 5E+02 0.011 26.5 8.8 26 264-289 760-785 (799)
373 KOG4543 Uncharacterized conser 25.0 48 0.001 26.8 1.7 53 1-53 132-187 (208)
374 KOG0994 Extracellular matrix g 25.0 9.3E+02 0.02 26.3 13.0 7 48-54 1163-1169(1758)
375 PF10158 LOH1CR12: Tumour supp 25.0 2.3E+02 0.0051 21.9 5.4 11 281-291 103-113 (131)
376 PF08289 Flu_M1_C: Influenza M 24.8 2.1E+02 0.0047 20.0 4.5 40 279-323 50-94 (95)
377 PF04423 Rad50_zn_hook: Rad50 24.8 45 0.00098 21.1 1.3 10 57-66 23-32 (54)
378 KOG2053 Mitochondrial inherita 24.5 2E+02 0.0043 29.8 6.1 17 233-249 25-41 (932)
379 PF08181 DegQ: DegQ (SacQ) fam 24.5 1.3E+02 0.0029 17.8 3.0 27 205-231 9-35 (46)
380 KOG3896 Dynactin, subunit p62 24.4 44 0.00095 30.1 1.5 35 20-55 21-56 (449)
381 PF09297 zf-NADH-PPase: NADH p 24.1 16 0.00034 20.4 -0.9 19 44-62 3-29 (32)
382 KOG4340 Uncharacterized conser 23.9 2.4E+02 0.0052 25.4 5.8 27 212-238 146-172 (459)
383 cd07595 BAR_RhoGAP_Rich-like T 23.6 3.9E+02 0.0084 23.1 7.2 14 278-291 207-220 (244)
384 KOG0976 Rho/Rac1-interacting s 23.3 7.9E+02 0.017 25.5 9.7 82 203-291 389-471 (1265)
385 cd02682 MIT_AAA_Arch MIT: doma 23.3 2.6E+02 0.0056 19.3 7.2 30 221-250 17-46 (75)
386 COG0068 HypF Hydrogenase matur 23.3 47 0.001 33.2 1.6 44 22-65 100-184 (750)
387 PLN03081 pentatricopeptide (PP 23.0 3.4E+02 0.0074 27.4 7.8 25 213-237 293-317 (697)
388 PF05600 DUF773: Protein of un 22.9 7.1E+02 0.015 24.2 10.3 95 188-288 112-214 (507)
389 PF06160 EzrA: Septation ring 22.7 7.5E+02 0.016 24.4 10.8 26 266-291 181-206 (560)
390 COG1194 MutY A/G-specific DNA 22.6 3.7E+02 0.008 24.6 6.9 71 216-299 39-113 (342)
391 COG1722 XseB Exonuclease VII s 22.4 2.8E+02 0.0061 19.4 5.3 38 205-242 12-49 (81)
392 KOG3060 Uncharacterized conser 22.4 2.5E+02 0.0053 24.7 5.5 21 264-284 160-180 (289)
393 KOG0976 Rho/Rac1-interacting s 22.3 2.5E+02 0.0053 28.8 6.1 28 264-291 402-429 (1265)
394 PRK00420 hypothetical protein; 22.3 61 0.0013 24.3 1.7 29 23-65 23-51 (112)
395 cd07639 BAR_ACAP1 The Bin/Amph 22.3 4.7E+02 0.01 21.9 7.3 31 210-240 94-124 (200)
396 cd07606 BAR_SFC_plant The Bin/ 22.2 4.7E+02 0.01 21.9 7.1 32 209-240 95-126 (202)
397 cd02683 MIT_1 MIT: domain cont 22.2 2.7E+02 0.0059 19.1 7.7 29 221-249 17-45 (77)
398 COG1645 Uncharacterized Zn-fin 22.1 43 0.00093 25.8 0.9 13 23-35 28-40 (131)
399 PF02318 FYVE_2: FYVE-type zin 21.7 36 0.00077 25.7 0.4 32 22-53 53-88 (118)
400 PF06160 EzrA: Septation ring 21.7 5.5E+02 0.012 25.3 8.7 27 198-224 435-461 (560)
401 PF13717 zinc_ribbon_4: zinc-r 21.5 36 0.00079 19.6 0.3 8 25-32 4-11 (36)
402 PLN03081 pentatricopeptide (PP 21.5 1.5E+02 0.0033 29.9 4.9 27 259-285 392-418 (697)
403 PF13240 zinc_ribbon_2: zinc-r 21.4 32 0.00068 17.7 0.0 6 26-31 2-7 (23)
404 PF01286 XPA_N: XPA protein N- 21.3 34 0.00074 19.6 0.1 26 36-61 3-28 (34)
405 KOG2047 mRNA splicing factor [ 21.1 2.9E+02 0.0062 27.7 6.2 104 208-324 385-494 (835)
406 KOG3876 Arfaptin and related p 21.1 4.8E+02 0.01 22.8 6.9 37 265-301 220-256 (341)
407 PRK14714 DNA polymerase II lar 21.1 90 0.002 33.5 3.1 59 23-82 667-742 (1337)
408 PRK03947 prefoldin subunit alp 21.0 1.4E+02 0.0031 23.0 3.7 34 211-244 17-50 (140)
409 KOG4234 TPR repeat-containing 20.9 2.5E+02 0.0055 23.8 5.1 34 257-290 94-127 (271)
410 PF04048 Sec8_exocyst: Sec8 ex 20.8 4.1E+02 0.0089 20.7 7.7 97 129-241 38-134 (142)
411 smart00734 ZnF_Rad18 Rad18-lik 20.8 51 0.0011 17.5 0.8 10 56-65 3-12 (26)
412 COG2959 HemX Uncharacterized e 20.8 6.8E+02 0.015 23.2 10.8 42 250-291 128-170 (391)
413 PF14353 CpXC: CpXC protein 20.6 51 0.0011 25.1 1.0 9 57-65 41-49 (128)
414 PF15290 Syntaphilin: Golgi-lo 20.5 6E+02 0.013 22.5 9.4 15 206-220 81-95 (305)
415 PF13779 DUF4175: Domain of un 20.4 7.6E+02 0.016 25.8 9.4 69 222-291 497-573 (820)
416 PF09304 Cortex-I_coil: Cortex 20.3 3.7E+02 0.008 20.0 7.0 43 197-239 6-48 (107)
417 COG4105 ComL DNA uptake lipopr 20.1 4E+02 0.0086 23.2 6.4 65 203-278 160-224 (254)
418 PF12063 DUF3543: Domain of un 20.1 5.7E+02 0.012 22.0 11.1 39 253-291 160-199 (238)
No 1
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.29 E-value=6e-13 Score=81.50 Aligned_cols=34 Identities=41% Similarity=1.176 Sum_probs=28.1
Q ss_pred cccccccccCCCeecccCCcchHHhHhcCCC--------CCCC
Q 020453 26 CMICQALLFECSKCTPCSHVYCKACISRFKD--------CPLC 60 (326)
Q Consensus 26 C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~--------CP~C 60 (326)
||||+++ +.+|++|+|||+||+.||.++|. ||.|
T Consensus 1 CpiC~~~-~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDL-FKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB--SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchh-hCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999 57799999999999999998864 7776
No 2
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=99.19 E-value=2e-11 Score=108.17 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=43.5
Q ss_pred HHHHHH-HHHHHHHH------HH--HHHhCCc--hhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHH
Q 020453 159 ELCSQL-GAVLGMLG------DC--CRAMGDA--DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLK 220 (326)
Q Consensus 159 ~~C~~H-~~~l~~~C------~~--~~~~h~~--H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~ 220 (326)
..|..| ++.+.+|| .| |..+++| |++..+-..+.-++.+|......+...-+++.+.|+.++
T Consensus 224 ~~ct~h~~e~~smyc~~ck~pvc~~clee~khs~hevkal~~~~k~hksqls~al~~lsdrak~a~e~l~~lr 296 (699)
T KOG4367|consen 224 STCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLR 296 (699)
T ss_pred hhccCCCCCCceEEEEecCChHHHHHHHhhcccchhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999 67888899 33 3455444 999999888888887777666556555555666665555
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.03 E-value=7.9e-09 Score=97.23 Aligned_cols=183 Identities=16% Similarity=0.153 Sum_probs=142.5
Q ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHH
Q 020453 127 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 206 (326)
Q Consensus 127 ~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~ 206 (326)
.+.+|+++.|..-+..+-..+... .. ..++.-...+++|+......+++.+++.+++.++.+...+.+. ..
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~-----~G-~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~---~h 279 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKT-----SG-LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE---DH 279 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHc-----cC-ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC---CC
Confidence 345788888877665443322110 00 2233344556678888888899999999999999777665442 23
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 207 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 207 ~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
..++...++|+.++...|++++|..+++++++|++........ +++..+++++.++...+++++|..+|+.+++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~------~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP------EVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH------HHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4567889999999999999999999999999999985554433 6889999999999999999999999999999
Q ss_pred HHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 287 RLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 287 ~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
|+... ..++..+.+..++ +.++.++|++..+.+.|++|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl--~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANL--AELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHHhhccccchHHHHHHHHH--HHHHHHhcchhHHHHHHHHH
Confidence 99876 3445567788899 99999999999999988875
No 4
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.00 E-value=2.5e-10 Score=77.22 Aligned_cols=56 Identities=14% Similarity=0.339 Sum_probs=48.5
Q ss_pred CcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHH
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDR 79 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~ 79 (326)
++.||||.+. .++|+.++|||+||+.||..|+. ||.|+..+. ++..|..+++.++.
T Consensus 1 ~~~Cpi~~~~-~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEV-MKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCc-CCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence 4789999999 57799999999999999998863 999999886 48888888887763
No 5
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.95 E-value=4.4e-10 Score=101.88 Aligned_cols=60 Identities=35% Similarity=0.864 Sum_probs=53.2
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC----CCCCCCcccc--cccccHHHHHHHHHHHh
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIE--KIEADTTLQDVVDRFIE 82 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~--~~~~n~~l~~~~~~~~~ 82 (326)
..+.|+||+++ +..|++++|||+||..||..|+ .||.|+..+. .+..|..|.++|+.|..
T Consensus 25 ~~l~C~IC~d~-~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 25 TSLRCHICKDF-FDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred cccCCCcCchh-hhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 67899999999 5779999999999999999876 3999999887 48889999999998864
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.84 E-value=1.2e-09 Score=88.48 Aligned_cols=43 Identities=33% Similarity=0.942 Sum_probs=38.6
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC--------------------CCCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK--------------------DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~--------------------~CP~Cr~~~~ 65 (326)
+.+.|+||++. +.+|++++|||.||+.||..|+ .||.||..+.
T Consensus 17 ~~~~CpICld~-~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQ-VRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCc-CCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 67999999999 5789999999999999998773 3999999887
No 7
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.81 E-value=2.6e-09 Score=74.21 Aligned_cols=61 Identities=16% Similarity=0.389 Sum_probs=49.5
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCCC-----CCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIE--KIEADTTLQDVVDRFIEG 83 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~ 83 (326)
+.|.|||+..+ ..+|+.+++||+|++.+|+.|+. ||.++..+. ++.+|..|++.++.+...
T Consensus 3 ~~f~CpIt~~l-M~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 3 DEFLCPITGEL-MRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp GGGB-TTTSSB--SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHH
T ss_pred cccCCcCcCcH-hhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHH
Confidence 67999999999 57799999999999999999863 999998887 489999999999998764
No 8
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.80 E-value=1.7e-09 Score=93.27 Aligned_cols=60 Identities=32% Similarity=0.782 Sum_probs=52.5
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHHHHh
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDRFIE 82 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~~~~ 82 (326)
..|.|-||+++ |.-|+..||+|+||.-||..+.. ||.|+..+. .+..|+.+.+|+..|..
T Consensus 22 ~lLRC~IC~ey-f~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 22 DLLRCGICFEY-FNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred HHHHHhHHHHH-hcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 57899999999 56699999999999999998863 999999998 48889999998887643
No 9
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.7e-09 Score=94.94 Aligned_cols=64 Identities=28% Similarity=0.699 Sum_probs=54.1
Q ss_pred ccCCcccccccccccCCCeecccCCcchHHhHhcCC----CCCCCCcccccccccHHHHHHHHHHHhcc
Q 020453 20 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKIEADTTLQDVVDRFIEGH 84 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~~~~~n~~l~~~~~~~~~~~ 84 (326)
..+++.|+||++. +..|++++|||+||..|+..+| .||.||.....+..|..+.++++.+....
T Consensus 10 ~~~~~~C~iC~~~-~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 10 LQEELTCPICLEY-FREPVLLPCGHNFCRACLTRSWEGPLSCPVCRPPSRNLRPNVLLANLVERLRQLR 77 (386)
T ss_pred ccccccChhhHHH-hhcCccccccchHhHHHHHHhcCCCcCCcccCCchhccCccHHHHHHHHHHHhcC
Confidence 3478999999999 5779999999999999999887 49999963336778999999999887643
No 10
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.72 E-value=1e-08 Score=67.00 Aligned_cols=55 Identities=29% Similarity=0.803 Sum_probs=30.5
Q ss_pred CCcccccccccccCCCee-cccCCcchHHhHhcCC--CCCCCCcccc--cccccHHHHHHH
Q 020453 22 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFK--DCPLCGADIE--KIEADTTLQDVV 77 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~-l~C~h~fC~~Cl~~~~--~CP~Cr~~~~--~~~~n~~l~~~~ 77 (326)
..+.|++|.++| ..|++ -.|.|.||+.|+.... .||+|+.+.- ++..|..+.+++
T Consensus 6 ~lLrCs~C~~~l-~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDIL-KEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S---SS-B---SSS--B-TTTGGGGTTTB-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHh-cCCceeccCccHHHHHHhHHhcCCCCCCcCChHHHHHHHhhhhhhccC
Confidence 468899999995 66986 6799999999998875 4999998874 799999988764
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.69 E-value=2.6e-09 Score=64.57 Aligned_cols=34 Identities=44% Similarity=1.184 Sum_probs=27.7
Q ss_pred cccccccccCCC-eecccCCcchHHhHhcCC----CCCCC
Q 020453 26 CMICQALLFECS-KCTPCSHVYCKACISRFK----DCPLC 60 (326)
Q Consensus 26 C~iC~~~l~~~p-~~l~C~h~fC~~Cl~~~~----~CP~C 60 (326)
|+||++.+ .+| +.++|||+||..|+.+|. .||.|
T Consensus 1 C~iC~~~~-~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL-RDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB--SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcc-cCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999994 668 689999999999998874 38876
No 12
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=7.6e-09 Score=87.88 Aligned_cols=46 Identities=28% Similarity=0.793 Sum_probs=40.6
Q ss_pred cccCCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453 19 FKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 19 ~~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
+......|.+|++. ..+|..+||||.||..||..|.. ||.||..+.
T Consensus 235 i~~a~~kC~LCLe~-~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 235 IPEATRKCSLCLEN-RSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCCCCCceEEEecC-CCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 44466899999999 78899999999999999999963 999998876
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.65 E-value=5.1e-09 Score=88.65 Aligned_cols=50 Identities=26% Similarity=0.727 Sum_probs=39.7
Q ss_pred cCCcccccccccccCCC-------eecccCCcchHHhHhcCCC----CCCCCccccccccc
Q 020453 21 IGPLSCMICQALLFECS-------KCTPCSHVYCKACISRFKD----CPLCGADIEKIEAD 70 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p-------~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~~~~n 70 (326)
.+...|+||++.+..++ +..+|+|.||..||.+|.. ||.||..+..+..+
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 35689999999855533 5678999999999999863 99999988754443
No 14
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.63 E-value=2.9e-07 Score=64.90 Aligned_cols=76 Identities=18% Similarity=0.321 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 208 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 208 ~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
.+.....+++.+...++++++|+.+|++++++ .+..... ..+++.++.++|.++..+|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDD------HPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTH------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCC------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45678899999999999999999999999999 5444432 2357899999999999999999999999999999
Q ss_pred HHH
Q 020453 288 LES 290 (326)
Q Consensus 288 ~~~ 290 (326)
.+.
T Consensus 76 ~~k 78 (78)
T PF13424_consen 76 FEK 78 (78)
T ss_dssp HHH
T ss_pred hcC
Confidence 863
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.62 E-value=9e-09 Score=65.95 Aligned_cols=43 Identities=35% Similarity=0.839 Sum_probs=35.6
Q ss_pred CCcccccccccccCCCeecccCCc-chHHhHhcC----CCCCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHV-YCKACISRF----KDCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~-fC~~Cl~~~----~~CP~Cr~~~~ 65 (326)
++..|+||++. ..+++.+||||. ||..|+.+| ..||.||+.+.
T Consensus 1 ~~~~C~iC~~~-~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFEN-PRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSS-BSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCcc-CCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 35789999999 577999999999 999999999 45999998865
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.59 E-value=8.1e-09 Score=63.24 Aligned_cols=34 Identities=41% Similarity=1.205 Sum_probs=29.5
Q ss_pred cccccccccCCCe-ecccCCcchHHhHhcCCC------CCCC
Q 020453 26 CMICQALLFECSK-CTPCSHVYCKACISRFKD------CPLC 60 (326)
Q Consensus 26 C~iC~~~l~~~p~-~l~C~h~fC~~Cl~~~~~------CP~C 60 (326)
|+||++. +..|+ +++|||+||..|+.+|+. ||.|
T Consensus 1 C~iC~~~-~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEP-FEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSB-CSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcc-ccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999 56688 999999999999988753 8876
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.58 E-value=3.2e-08 Score=61.42 Aligned_cols=38 Identities=32% Similarity=0.981 Sum_probs=32.4
Q ss_pred ccccccccc--cCCCeecccCCcchHHhHhcCC----CCCCCCc
Q 020453 25 SCMICQALL--FECSKCTPCSHVYCKACISRFK----DCPLCGA 62 (326)
Q Consensus 25 ~C~iC~~~l--~~~p~~l~C~h~fC~~Cl~~~~----~CP~Cr~ 62 (326)
.|++|+..+ ...|+.++|||+||..|+..+. .||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999984 2359999999999999999887 5999985
No 18
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.58 E-value=8.6e-07 Score=83.66 Aligned_cols=140 Identities=16% Similarity=0.124 Sum_probs=110.5
Q ss_pred HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453 173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 252 (326)
Q Consensus 173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~ 252 (326)
..+...+++..++++.+.+.+...+..+ -....++...++++.++.+++++.+|+..|++++++++...+....
T Consensus 207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G---~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~--- 280 (508)
T KOG1840|consen 207 EMYAVQGRLEKAEPLCKQALRILEKTSG---LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP--- 280 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHccC---ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH---
Confidence 4555678888888888888877555444 1244566677789999999999999999999999999999988776
Q ss_pred hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453 253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF 323 (326)
Q Consensus 253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (326)
.++..+++|+.+|..+|++++|..++++|++|.+.+ ..+|+.+..+.++ +.++...+.+-.+..+|
T Consensus 281 ---~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~--~~~~~~~~~~Eea~~l~ 348 (508)
T KOG1840|consen 281 ---AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL--AAILQSMNEYEEAKKLL 348 (508)
T ss_pred ---HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH--HHHHHHhcchhHHHHHH
Confidence 679999999999999999999999999999999997 5566666666665 55555555555444443
No 19
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.58 E-value=6.6e-09 Score=64.65 Aligned_cols=37 Identities=35% Similarity=0.886 Sum_probs=30.9
Q ss_pred cccccccccc--CCCeecccCCcchHHhHhcCC----CCCCCC
Q 020453 25 SCMICQALLF--ECSKCTPCSHVYCKACISRFK----DCPLCG 61 (326)
Q Consensus 25 ~C~iC~~~l~--~~p~~l~C~h~fC~~Cl~~~~----~CP~Cr 61 (326)
.|+||++.+. ..++.++|||.||..||.+|+ .||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999853 358889999999999999996 399997
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.6e-08 Score=77.82 Aligned_cols=43 Identities=35% Similarity=0.828 Sum_probs=36.1
Q ss_pred CCcccccccccccCC--CeecccCCcchHHhHhcCC----CCCCCCcccc
Q 020453 22 GPLSCMICQALLFEC--SKCTPCSHVYCKACISRFK----DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~--p~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~ 65 (326)
+.+.||||++- +.. |+...|||.||+.||.... .||+|++.+.
T Consensus 130 ~~~~CPiCl~~-~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 130 GTYKCPICLDS-VSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred cccCCCceecc-hhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 56899999997 453 7889999999999998875 3999998655
No 21
>PHA02926 zinc finger-like protein; Provisional
Probab=98.49 E-value=3.8e-08 Score=80.61 Aligned_cols=50 Identities=24% Similarity=0.753 Sum_probs=39.1
Q ss_pred cCCcccccccccccCC--------CeecccCCcchHHhHhcCCC----------CCCCCccccccccc
Q 020453 21 IGPLSCMICQALLFEC--------SKCTPCSHVYCKACISRFKD----------CPLCGADIEKIEAD 70 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~--------p~~l~C~h~fC~~Cl~~~~~----------CP~Cr~~~~~~~~n 70 (326)
..+..|+||++..+.. ++..+|+|+||..||..|.. ||.||..+..+.++
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 3578999999975442 45679999999999999852 99999988754433
No 22
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.47 E-value=7.2e-08 Score=81.62 Aligned_cols=59 Identities=25% Similarity=0.673 Sum_probs=48.9
Q ss_pred CcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHHHHh
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDRFIE 82 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~~~~ 82 (326)
.+.|-||..+| .-|...+|||+||.-||.++.. ||.||.... .++.+..+..+++.+..
T Consensus 25 ~lrC~IC~~~i-~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 25 MLRCRICDCRI-SIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred HHHhhhhhhee-ecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 57899999994 6699999999999999999864 999999887 36677777777766543
No 23
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.4e-08 Score=80.38 Aligned_cols=45 Identities=31% Similarity=0.829 Sum_probs=40.2
Q ss_pred ccCCcccccccccccCCCeecccCCcchHHhHhcCCC-------CCCCCcccc
Q 020453 20 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-------CPLCGADIE 65 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-------CP~Cr~~~~ 65 (326)
.-..+.|.||++. -.+||...|||-||..||-+|.. ||+|+..+.
T Consensus 44 ~~~~FdCNICLd~-akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDL-AKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccc-cCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 3467899999999 68899999999999999999963 999998887
No 24
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.41 E-value=5.9e-08 Score=59.34 Aligned_cols=28 Identities=36% Similarity=1.108 Sum_probs=18.7
Q ss_pred cccccccccCC----CeecccCCcchHHhHhcCC
Q 020453 26 CMICQALLFEC----SKCTPCSHVYCKACISRFK 55 (326)
Q Consensus 26 C~iC~~~l~~~----p~~l~C~h~fC~~Cl~~~~ 55 (326)
||||.+ + .. |+.|+|||+||+.||.+++
T Consensus 1 CpIc~e-~-~~~~n~P~~L~CGH~~c~~cl~~l~ 32 (43)
T PF13445_consen 1 CPICKE-F-STEENPPMVLPCGHVFCKDCLQKLS 32 (43)
T ss_dssp -TTT------TTSS-EEE-SSS-EEEHHHHHHHH
T ss_pred CCcccc-c-cCCCCCCEEEeCccHHHHHHHHHHH
Confidence 899999 3 55 9999999999999998763
No 25
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.26 E-value=3e-07 Score=57.16 Aligned_cols=38 Identities=34% Similarity=0.967 Sum_probs=30.9
Q ss_pred ccccccccccCCCeecc-cCCcchHHhHhcCC-----CCCCCCcc
Q 020453 25 SCMICQALLFECSKCTP-CSHVYCKACISRFK-----DCPLCGAD 63 (326)
Q Consensus 25 ~C~iC~~~l~~~p~~l~-C~h~fC~~Cl~~~~-----~CP~Cr~~ 63 (326)
.|+||.+.+ ..++.++ |||.||..|+..|+ .||.|+..
T Consensus 1 ~C~iC~~~~-~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 599999995 5566665 99999999998764 49999875
No 26
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.22 E-value=4.6e-07 Score=54.28 Aligned_cols=34 Identities=35% Similarity=1.145 Sum_probs=29.5
Q ss_pred cccccccccCCCeecccCCcchHHhHhcCCC-----CCCC
Q 020453 26 CMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLC 60 (326)
Q Consensus 26 C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-----CP~C 60 (326)
|+||++. ...++.++|||.||..|+..|+. ||.|
T Consensus 1 C~iC~~~-~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE-LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC-CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899999 57799999999999999987743 8876
No 27
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.21 E-value=3.1e-07 Score=79.69 Aligned_cols=63 Identities=37% Similarity=0.888 Sum_probs=52.2
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCccccc------ccccHHHHHHHHHHHhcc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEK------IEADTTLQDVVDRFIEGH 84 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~------~~~n~~l~~~~~~~~~~~ 84 (326)
...+|.+|..+|.+.-.+..|.||||++||.+++. ||.|...+.. +..+..|+.++.++..+.
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl 86 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGL 86 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchH
Confidence 67899999999766555567999999999988763 9999988763 677889999998886654
No 28
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.19 E-value=6.6e-06 Score=77.39 Aligned_cols=70 Identities=20% Similarity=0.416 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 159 ELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 238 (326)
Q Consensus 159 ~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~ 238 (326)
..|+.|...+..++....+.++-..++.++..+.+.- ...+..-++++.+.+++|.+++|+..|.+++.
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-----------p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-----------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-----------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 6799999999999999988888888888887766543 33455778888888888888888888888877
Q ss_pred H
Q 020453 239 V 239 (326)
Q Consensus 239 ~ 239 (326)
|
T Consensus 417 I 417 (966)
T KOG4626|consen 417 I 417 (966)
T ss_pred c
Confidence 5
No 29
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.2e-06 Score=73.67 Aligned_cols=44 Identities=34% Similarity=0.954 Sum_probs=37.2
Q ss_pred cCCcccccccccccCCCeecccCCcchHHhHhcCC-----C-CCCCCcccc
Q 020453 21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----D-CPLCGADIE 65 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~-CP~Cr~~~~ 65 (326)
+....|+||++. ...|..++|||.||..||-..| . ||.||..+.
T Consensus 213 ~~d~kC~lC~e~-~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEE-PEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecc-cCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 457889999999 4669999999999999998833 2 999997654
No 30
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.04 E-value=2.3e-06 Score=74.78 Aligned_cols=44 Identities=20% Similarity=0.671 Sum_probs=34.8
Q ss_pred CCcccccccccccCCCe---e-cccCCcchHHhHhcCCC-----CCCCCcccc
Q 020453 22 GPLSCMICQALLFECSK---C-TPCSHVYCKACISRFKD-----CPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~---~-l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~ 65 (326)
++..||+|...-+..|. . -+|||+||.+|+...|. ||.|+..+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr 54 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLR 54 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence 45789999994344454 2 27999999999999763 999998887
No 31
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.04 E-value=2.6e-06 Score=59.95 Aligned_cols=69 Identities=23% Similarity=0.249 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 256 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 256 ~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
+++..++++|.++..+|++++|+++|++++++.+.+ ..+|..+.+..++ +.++..+|++.+++.+|++|
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l--g~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNL--GECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHH--HHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHH
Confidence 578899999999999999999999999999996665 4455667788999 99999999999999988764
No 32
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.8e-06 Score=79.34 Aligned_cols=42 Identities=31% Similarity=0.876 Sum_probs=36.6
Q ss_pred CcccccccccccCCCeecccCCcchHHhHhcCCC---------CCCCCcccc
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKD---------CPLCGADIE 65 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~---------CP~Cr~~~~ 65 (326)
...||||+.. ..-|+...|||.||..||..+|. ||.|+..+.
T Consensus 186 ~~~CPICL~~-~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEP-PSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCC-CCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence 7889999999 45588888999999999988873 999998876
No 33
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=2.1e-06 Score=75.08 Aligned_cols=61 Identities=23% Similarity=0.600 Sum_probs=45.6
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc---ccccHHHHHHHHHHHh
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIE 82 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~---~~~n~~l~~~~~~~~~ 82 (326)
.++.||||+.+|.....+-.|+|.||..||-..+ .||.||+...+ +..+..+-.|+.++..
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~ 110 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYP 110 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhc
Confidence 5799999999976656666799999999996554 39999998873 5555555555555444
No 34
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.8e-05 Score=72.27 Aligned_cols=63 Identities=29% Similarity=0.840 Sum_probs=48.3
Q ss_pred cCCcccccccccccCCCeecccCCcchHHhHhcCC----CCCCCCccccccc-------ccHHHHHHHHHHHhcc
Q 020453 21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKIE-------ADTTLQDVVDRFIEGH 84 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~~~~-------~n~~l~~~~~~~~~~~ 84 (326)
..+|.|-||...|+. |+++||||+||..||.+.. .||.||..+..+. .|+....++.+|....
T Consensus 82 ~sef~c~vc~~~l~~-pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP-PVVTPCGHSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS 155 (398)
T ss_pred cchhhhhhhHhhcCC-CccccccccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 468999999999654 9999999999999987654 3999999988422 2555556676666543
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.72 E-value=0.00011 Score=66.49 Aligned_cols=44 Identities=20% Similarity=0.561 Sum_probs=35.9
Q ss_pred cCCcccccccccccCCC---eecccCCcchHHhHhcCCC--CCCCCccc
Q 020453 21 IGPLSCMICQALLFECS---KCTPCSHVYCKACISRFKD--CPLCGADI 64 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p---~~l~C~h~fC~~Cl~~~~~--CP~Cr~~~ 64 (326)
.+.-+||||++.+-..- +++.|.|+|=..|+..||. ||+||...
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q 221 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQ 221 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhc
Confidence 36779999999853332 6789999999999999985 99999653
No 36
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.0008 Score=59.72 Aligned_cols=137 Identities=15% Similarity=0.186 Sum_probs=92.4
Q ss_pred HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453 173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 252 (326)
Q Consensus 173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~ 252 (326)
.+....++...+...+..+.+...+++.. ........+.+.+.... ++++|+..|++++++..+...
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~-----~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~------- 109 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDK-----FEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR------- 109 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-H-----HHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc-------
Confidence 44456677788888888877777765542 22334445566666555 999999999999998765322
Q ss_pred hhhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 253 QVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 253 ~~~~la~~l~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
....+..+.++|.+++.. |++++|+++|++|.++++.-...-....+..++ +.++..++++.++...|++
T Consensus 110 -~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~--A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 110 -FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA--ADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH--HHHHHHTT-HHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH--HHHHHHhCCHHHHHHHHHH
Confidence 224578899999999999 999999999999999998742111123355566 6666777777777666643
No 37
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=1.6e-05 Score=76.63 Aligned_cols=43 Identities=30% Similarity=0.827 Sum_probs=38.0
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~ 65 (326)
+.|+||+|..- +.+-++..|||.||..|+.+.. .||.|...|.
T Consensus 642 ~~LkCs~Cn~R-~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 642 ELLKCSVCNTR-WKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred hceeCCCccCc-hhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 57899999988 5668999999999999998875 3999999887
No 38
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.52 E-value=2.6e-05 Score=53.96 Aligned_cols=37 Identities=38% Similarity=0.933 Sum_probs=28.5
Q ss_pred ccccccccccCC------------CeecccCCcchHHhHhcCCC----CCCCC
Q 020453 25 SCMICQALLFEC------------SKCTPCSHVYCKACISRFKD----CPLCG 61 (326)
Q Consensus 25 ~C~iC~~~l~~~------------p~~l~C~h~fC~~Cl~~~~~----CP~Cr 61 (326)
.|+||++.|.+. .+..+|||.|-..||.+|.. ||.||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 499999985221 24458999999999999964 99997
No 39
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.46 E-value=5.2e-05 Score=60.99 Aligned_cols=53 Identities=30% Similarity=0.679 Sum_probs=40.5
Q ss_pred CcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCccccc-ccccHHHHHH
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEK-IEADTTLQDV 76 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~-~~~n~~l~~~ 76 (326)
.|.|-||... |..|+...|||+||..|..+... |-.|.+.+.. +.+...+..+
T Consensus 196 PF~C~iCKkd-y~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~km 253 (259)
T COG5152 196 PFLCGICKKD-YESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKM 253 (259)
T ss_pred ceeehhchhh-ccchhhhhcchhHHHHHHHHHhccCCcceecchhhccceeHHhhHHHH
Confidence 5789999999 67799999999999999976653 8888887664 3333333333
No 40
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.45 E-value=0.001 Score=63.21 Aligned_cols=64 Identities=23% Similarity=0.425 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
+.+.++++.++..++.++.|...|.++++..- +.+...+|||.++..+|++++|+..|++++.|
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p--------------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFP--------------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhCh--------------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 45778999999999999999999999887643 34567788999999999999999999988876
No 41
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=8.9e-05 Score=63.77 Aligned_cols=43 Identities=28% Similarity=0.682 Sum_probs=37.1
Q ss_pred CcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK 66 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~ 66 (326)
.-.|+||+.. -..|+.++|+|-||.-||.... .|++||.++.+
T Consensus 7 ~~eC~IC~nt-~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNT-GNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeecc-CCcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 3469999999 5779999999999999998763 29999999984
No 42
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.00034 Score=63.23 Aligned_cols=126 Identities=16% Similarity=0.215 Sum_probs=85.2
Q ss_pred HhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHH
Q 020453 184 AVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAK 263 (326)
Q Consensus 184 ~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~ 263 (326)
++.++.+-+++.++++... ..-....++|..++-+|++.+|+...+.-+.|.++..++..+ ....+|
T Consensus 174 Av~fy~eNL~l~~~lgDr~-----aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAae--------RRA~sN 240 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRL-----AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAE--------RRAHSN 240 (639)
T ss_pred HHHHHHHHHHHHHHhhhHH-----hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHH--------HHhhcc
Confidence 3444444444444444322 123455678888888899999999998888888887666543 466788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 264 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
||..+.-+|+++.|+++|+.++.+-.++.+.-..+..-..+ +..|..+..+-++++||+
T Consensus 241 lgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSL--gNtytll~e~~kAI~Yh~ 299 (639)
T KOG1130|consen 241 LGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSL--GNTYTLLKEVQKAITYHQ 299 (639)
T ss_pred cchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHh--hhHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888877773222223333445 666677777777777765
No 43
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.36 E-value=0.00048 Score=41.65 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCC
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKP 295 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p 295 (326)
+.++++||.++..+|++++|+.++++++.+.+++ ..+|
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccccc
Confidence 6789999999999999999999999999999998 4455
No 44
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00024 Score=61.00 Aligned_cols=51 Identities=25% Similarity=0.711 Sum_probs=40.8
Q ss_pred CcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCccccc-ccccHHHH
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEK-IEADTTLQ 74 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~-~~~n~~l~ 74 (326)
.+.|-||... |.+||...|+|+||..|....+. |++|.+.+.. +.+...|.
T Consensus 241 Pf~c~icr~~-f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL~ 296 (313)
T KOG1813|consen 241 PFKCFICRKY-FYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKELL 296 (313)
T ss_pred Cccccccccc-cccchhhcCCceeehhhhccccccCCcceecccccccccchHHHHH
Confidence 4679999999 56699999999999999987754 9999998874 44444443
No 45
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=9.5e-05 Score=71.57 Aligned_cols=43 Identities=28% Similarity=0.789 Sum_probs=37.8
Q ss_pred CCcccccccccccCC----CeecccCCcchHHhHhcCCC----CCCCCccc
Q 020453 22 GPLSCMICQALLFEC----SKCTPCSHVYCKACISRFKD----CPLCGADI 64 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~----p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~ 64 (326)
....|+||.+.+... |+.++|+|.|+..|+..|+. ||.||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 467899999997665 89999999999999999974 99999844
No 46
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.026 Score=50.46 Aligned_cols=58 Identities=22% Similarity=0.596 Sum_probs=45.1
Q ss_pred CcccccccccccCC-----CeecccCCcchHHhHhcCC-----CCCCCCcccc-------cccccHHHHHHHHHH
Q 020453 23 PLSCMICQALLFEC-----SKCTPCSHVYCKACISRFK-----DCPLCGADIE-------KIEADTTLQDVVDRF 80 (326)
Q Consensus 23 ~l~C~iC~~~l~~~-----p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~-------~~~~n~~l~~~~~~~ 80 (326)
.+.|-||.+.+-.. |+.|.|||+||..|+.... .||.||.... .+..|+.+...++..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 46788888763222 9999999999999998774 3999999854 377788887777765
No 47
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.96 E-value=0.001 Score=57.09 Aligned_cols=60 Identities=27% Similarity=0.641 Sum_probs=44.8
Q ss_pred CCcccccccccccCCCeec-ccCCcchHHhHhcC-----CCCCCCCcc---cccccccHHHHHHHHHHHh
Q 020453 22 GPLSCMICQALLFECSKCT-PCSHVYCKACISRF-----KDCPLCGAD---IEKIEADTTLQDVVDRFIE 82 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~-----~~CP~Cr~~---~~~~~~n~~l~~~~~~~~~ 82 (326)
-.|.||+|..+|.. |... .|+|.||..||... +.||.|... +..+.++...+..|+.+..
T Consensus 273 i~LkCplc~~Llrn-p~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 273 ISLKCPLCHCLLRN-PMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred ccccCcchhhhhhC-cccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence 34999999999766 5555 79999999999854 459999863 3356777766666666544
No 48
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.95 E-value=0.043 Score=44.44 Aligned_cols=112 Identities=20% Similarity=0.286 Sum_probs=79.2
Q ss_pred HHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020453 171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 250 (326)
Q Consensus 171 ~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~ 250 (326)
.+.+....++.-.+...+..+.... +.. .....+..+++.+....+++++|+..|++++++. +..
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~----~~~----~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-------~~~ 105 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLE----IDP----YDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-------PFL 105 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcc----ccc----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCc
Confidence 3455555677777776666555442 111 1123467889999999999999999999998762 232
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCc
Q 020453 251 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEE 297 (326)
Q Consensus 251 ~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~ 297 (326)
......++..+.+++..+..+|+++.|+..+++++..++.. ...|++
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 33344566666777777779999999999999999999887 556654
No 49
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00063 Score=57.85 Aligned_cols=46 Identities=30% Similarity=0.818 Sum_probs=37.0
Q ss_pred ccCCcccccccccccCCCeecc-cCCcchHHhHhcCC------CCCCCCccccc
Q 020453 20 KIGPLSCMICQALLFECSKCTP-CSHVYCKACISRFK------DCPLCGADIEK 66 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~~p~~l~-C~h~fC~~Cl~~~~------~CP~Cr~~~~~ 66 (326)
.....+||+|.+. .+-|.+.- |||.||..|+.... .||.|......
T Consensus 236 ~t~~~~C~~Cg~~-PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 236 GTSDTECPVCGEP-PTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred ccCCceeeccCCC-CCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 3467899999999 67676654 99999999997653 39999988764
No 50
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.93 E-value=0.013 Score=58.06 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
....++.+....|++++|+..|++++++.... ......+...++.....+...|++++|++.+++++.+
T Consensus 469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-------~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l---- 537 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKET-------KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII---- 537 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-------ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----
Confidence 45667888888899999999999988763221 0011112222233333444456666666555555432
Q ss_pred hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+|+.......+ +.++..+|++.+++..|++
T Consensus 538 --~p~~~~a~~~l--a~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 538 --DPECDIAVATM--AQLLLQQGDVDEALKLFER 567 (615)
T ss_pred --CCCcHHHHHHH--HHHHHHccCHHHHHHHHHH
Confidence 34443334444 5555555555555555543
No 51
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00028 Score=62.34 Aligned_cols=49 Identities=24% Similarity=0.711 Sum_probs=40.1
Q ss_pred CCcccCCcccccccccccCC------------CeecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453 17 QSFKIGPLSCMICQALLFEC------------SKCTPCSHVYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 17 ~~~~~~~l~C~iC~~~l~~~------------p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
..+..++-+|.||.+-++-. |+.|||||.+=..|+..|.. ||.||.++.
T Consensus 281 eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred hhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 33455778999999975554 49999999999999999974 999999854
No 52
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.88 E-value=0.07 Score=47.30 Aligned_cols=96 Identities=21% Similarity=0.351 Sum_probs=72.3
Q ss_pred CCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhH
Q 020453 179 GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV 257 (326)
Q Consensus 179 h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~-~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~l 257 (326)
.+...++...+.+.+...+.+. ....+....+++++.... +++++|+..|++++++.+.... ....
T Consensus 88 ~~~~~Ai~~~~~A~~~y~~~G~-----~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~--------~~~a 154 (282)
T PF14938_consen 88 GDPDEAIECYEKAIEIYREAGR-----FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS--------PHSA 154 (282)
T ss_dssp TTHHHHHHHHHHHHHHHHHCT------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---------HHHH
T ss_pred hCHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--------hhhH
Confidence 3667788888888877776665 344567888999999888 9999999999999998775321 1245
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
...+.+++.++..+|+|++|++.|++....
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 677889999999999999999999877654
No 53
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.82 E-value=0.0085 Score=40.56 Aligned_cols=63 Identities=17% Similarity=0.389 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKR 287 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~-~~~~a~~~~~~~~~~ 287 (326)
.....+|.+....+++++|+..|.+++++- + +-+..+.++|.++..+| ++++|++.+++++++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p-------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------P-------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------T-------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------C-------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 456788999999999999999999998872 2 23557889999999999 799999999998875
No 54
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.74 E-value=0.012 Score=53.50 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=87.9
Q ss_pred CCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHH
Q 020453 179 GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVA 258 (326)
Q Consensus 179 h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la 258 (326)
|+...++-..+..+++.++.+. +.....+..+|+....-+++++.|+++|...+.+..++.++..+ |
T Consensus 209 Gdf~~ai~~H~~RL~ia~efGD-----rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE--------A 275 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQEFGD-----RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE--------A 275 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHhhh-----HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH--------H
Confidence 4445555555555566555554 22234567789999988999999999999999988887776644 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHhhccchhhhHHHHhHHhcCc
Q 020453 259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLP 321 (326)
Q Consensus 259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (326)
.+--.||..|..+.++++|++|+++-+.|-++| ..-++ +..-|.=+..++.++.+.+++-
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe---~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE---LRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhhhhHHHHHH
Confidence 555567888888889999999999999999988 43332 1211111455666777766653
No 55
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.00058 Score=60.99 Aligned_cols=41 Identities=37% Similarity=0.862 Sum_probs=35.2
Q ss_pred cccccccccccCC---CeecccCCcchHHhHhcCCC-----CCCCCcccc
Q 020453 24 LSCMICQALLFEC---SKCTPCSHVYCKACISRFKD-----CPLCGADIE 65 (326)
Q Consensus 24 l~C~iC~~~l~~~---p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~ 65 (326)
.+|.||++. |.. -+.|||.|.|=..||..|.. ||.|+....
T Consensus 230 ~~CaIClEd-Y~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLED-YEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecc-cccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 599999998 453 57799999999999999963 999998776
No 56
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.70 E-value=0.02 Score=56.67 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=63.9
Q ss_pred HHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020453 172 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 251 (326)
Q Consensus 172 C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~ 251 (326)
+.+....++...+...++.+.+. .+... .....++.+....|++++|+..|++++++. +.+
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-------P~~- 432 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKL----NSEDP-------DIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-------PDF- 432 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------ccC-
Confidence 34444555666666555554332 22222 234567777777888888888888876642 111
Q ss_pred chhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 252 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 252 ~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
...+.++|.++..+|++++|+..|++++.+ .|.++.+...+ +.++..+|++.+++..|+
T Consensus 433 ------~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~P~~~~~~~~l--g~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 433 ------IFSHIQLGVTQYKEGSIASSMATFRRCKKN------FPEAPDVYNYY--GELLLDQNKFDEAIEKFD 491 (615)
T ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHHHHH--HHHHHHccCHHHHHHHHH
Confidence 123445566666666666666666555432 34444444444 444444444444444443
No 57
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.66 E-value=0.016 Score=47.02 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 209 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 209 i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
.......++.+....+++++|+..|.+++.+.. .+ .+.+.++.++|.++..+|++++|+..+++++.+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DP------YDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cc------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345567788888999999999999999988731 11 123557889999999999999999999988865
No 58
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.57 E-value=0.0011 Score=43.33 Aligned_cols=37 Identities=30% Similarity=0.570 Sum_probs=26.1
Q ss_pred CCcccccccccccCCCee-cccCCcchHHhHhcCCC------CCC
Q 020453 22 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFKD------CPL 59 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~-l~C~h~fC~~Cl~~~~~------CP~ 59 (326)
-.+.|||.+.. +.+|+. ..|||+|.+..|..+.. ||.
T Consensus 10 ~~~~CPiT~~~-~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQP-FEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB--SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCCh-hhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45899999999 577877 58999999999998872 887
No 59
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.54 E-value=0.0075 Score=35.28 Aligned_cols=31 Identities=16% Similarity=0.356 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
++.+||.++..+|++++|+++|++++.+-+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4788999999999999999999999876654
No 60
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.53 E-value=0.091 Score=42.78 Aligned_cols=113 Identities=21% Similarity=0.295 Sum_probs=77.7
Q ss_pred HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453 170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 249 (326)
Q Consensus 170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~ 249 (326)
..+......++...+...++.+...... .. ........++.+....|++++|+..|.+++++. +.
T Consensus 40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~ 104 (172)
T PRK02603 40 RDGMSAQADGEYAEALENYEEALKLEED----PN----DRSYILYNMGIIYASNGEHDKALEYYHQALELN-------PK 104 (172)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhc----cc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cc
Confidence 3345555678888888887766654221 10 123456789999999999999999999988752 23
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCc
Q 020453 250 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEE 297 (326)
Q Consensus 250 ~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~ 297 (326)
.......++..+..++......|+++.|+..|+++++.+++. ..+|++
T Consensus 105 ~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 105 QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 333333445555555556666678899999999999999888 666765
No 61
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.39 E-value=0.0025 Score=58.97 Aligned_cols=43 Identities=30% Similarity=0.807 Sum_probs=36.7
Q ss_pred CCcccccccccccCCCee-cccCCcchHHhHhcCCC----CCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~-l~C~h~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
+.+.|++|..++ .+|+. ..|||.||..|+..|.. ||.|+....
T Consensus 20 ~~l~C~~C~~vl-~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 20 ENLLCPICMSVL-RDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred ccccCccccccc-cCCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 569999999996 55777 59999999999999864 999987766
No 62
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0015 Score=58.71 Aligned_cols=45 Identities=29% Similarity=0.798 Sum_probs=36.2
Q ss_pred ccCCcccccccccccCCCe-----e---cccCCcchHHhHhcCC-----------CCCCCCcccc
Q 020453 20 KIGPLSCMICQALLFECSK-----C---TPCSHVYCKACISRFK-----------DCPLCGADIE 65 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~~p~-----~---l~C~h~fC~~Cl~~~~-----------~CP~Cr~~~~ 65 (326)
...+..|-||.+.... +. . .+|-|+||..||..|. .||.||....
T Consensus 158 ~s~~k~CGICme~i~e-k~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 158 KSSEKECGICMETINE-KAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccccceehhhhccc-cchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 3568899999998544 43 2 5699999999999995 2999998776
No 63
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.35 E-value=0.002 Score=41.01 Aligned_cols=43 Identities=28% Similarity=0.866 Sum_probs=34.1
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhc--CCCCCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISR--FKDCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~--~~~CP~Cr~~~~ 65 (326)
.+..|-.|... ....+.+||||..|..|... +..||.|..++.
T Consensus 6 ~~~~~~~~~~~-~~~~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~ 50 (55)
T PF14447_consen 6 PEQPCVFCGFV-GTKGTVLPCGHLICDNCFPGERYNGCPFCGTPFE 50 (55)
T ss_pred cceeEEEcccc-ccccccccccceeeccccChhhccCCCCCCCccc
Confidence 34567777777 56689999999999999854 456999998875
No 64
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0017 Score=56.05 Aligned_cols=43 Identities=26% Similarity=0.824 Sum_probs=35.3
Q ss_pred CcccccccccccC--CCeecccCCcchHHhHhcCC-----CCCCCCcccc
Q 020453 23 PLSCMICQALLFE--CSKCTPCSHVYCKACISRFK-----DCPLCGADIE 65 (326)
Q Consensus 23 ~l~C~iC~~~l~~--~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~ 65 (326)
...|.||+.-+.. .-+.+||.|.|=..|+..|. +||+||..++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 4789999986433 25679999999999999996 4999998765
No 65
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.14 E-value=0.011 Score=46.81 Aligned_cols=89 Identities=10% Similarity=0.010 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 294 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~ 294 (326)
..+......|++++|...|.+++.+ .+. ....+.++|.++..+|++++|+..|++++. .+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~-------~P~-------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~------l~ 88 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA-------QPW-------SWRAHIALAGTWMMLKEYTTAINFYGHALM------LD 88 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-------CCC-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cC
Confidence 3466667788888888888876543 222 234556677777777777777777776654 24
Q ss_pred CCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 295 PEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 295 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
|.++....++ +..+..+|+...+...|.+
T Consensus 89 p~~~~a~~~l--g~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 89 ASHPEPVYQT--GVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred CCCcHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 5555666666 6666666666666655543
No 66
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.12 E-value=0.0026 Score=44.69 Aligned_cols=28 Identities=29% Similarity=0.758 Sum_probs=23.1
Q ss_pred eecccCCcchHHhHhcCCC-------CCCCCcccc
Q 020453 38 KCTPCSHVYCKACISRFKD-------CPLCGADIE 65 (326)
Q Consensus 38 ~~l~C~h~fC~~Cl~~~~~-------CP~Cr~~~~ 65 (326)
+.-.|+|.|=..||.+|.. ||.||+...
T Consensus 48 v~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 48 VWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3447999999999999963 999998753
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.08 E-value=0.11 Score=43.26 Aligned_cols=28 Identities=18% Similarity=0.067 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
.+..++.++...|++++|...+++++.+
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445566666666666666666655443
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0085 Score=56.39 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
..++.+|-+.+..+.+.+|..+|+.+++..+++..... -..-.++|||-++..++.+++|+.+|++++....
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~- 486 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP- 486 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-
Confidence 35678888888899999999999999976665444332 2355789999999999999999999998886542
Q ss_pred hhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.++.+-..+ +-++..+|+..+|..+|.+
T Consensus 487 -----k~~~~~asi--g~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 487 -----KDASTHASI--GYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred -----CchhHHHHH--HHHHHHhcChHHHHHHHHH
Confidence 233333334 5555666666666666554
No 69
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.94 E-value=0.071 Score=43.40 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
......++......+++++|+..|++++++... .. +.+..+.++|.++..+|++++|+..|++++.+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEED-----PN------DRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cc------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445678888889999999999999999876432 11 12456788999999999999999999988875
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.061 Score=50.88 Aligned_cols=97 Identities=21% Similarity=0.283 Sum_probs=73.3
Q ss_pred HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453 173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 252 (326)
Q Consensus 173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~ 252 (326)
.+........++..++..+++....+..+...|.. ..++||-+...++.+++|+.+|+++|.+..+
T Consensus 422 vvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p----~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k---------- 487 (611)
T KOG1173|consen 422 VVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP----TLNNLGHAYRKLNKYEEAIDYYQKALLLSPK---------- 487 (611)
T ss_pred heeehHhhhHHHHHHHHHHHHHhhhccccccchhH----HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC----------
Confidence 33334455577777777777555555554444433 5689999999999999999999999876332
Q ss_pred hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
-+.+...+|.++..+|+.++|+++|.+++.+
T Consensus 488 ----~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 488 ----DASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred ----chhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 1457788999999999999999999998865
No 71
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.0022 Score=55.04 Aligned_cols=42 Identities=29% Similarity=0.681 Sum_probs=36.0
Q ss_pred CcccccccccccCCCeecccCCcc-hHHhHhcCCCCCCCCcccc
Q 020453 23 PLSCMICQALLFECSKCTPCSHVY-CKACISRFKDCPLCGADIE 65 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~f-C~~Cl~~~~~CP~Cr~~~~ 65 (326)
.-.|.||.+. ..+=+.|+|||.. |..|-.+...||.||+-+.
T Consensus 300 ~~LC~ICmDa-P~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDA-PRDCVFLECGHMVTCTKCGKRMNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcC-CcceEEeecCcEEeehhhccccccCchHHHHHH
Confidence 5679999999 6779999999954 9999999889999997543
No 72
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.66 E-value=0.011 Score=39.91 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHH-hHHhcCcccccC
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQK-NHLNQLPKFRSA 326 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 326 (326)
+..+..+|..+...|++++|+..|++++.+ +|+++.+..++ +..+..++ +..+++.+|++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~--g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNL--GLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHH--HHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHH--HHHHHHhCccHHHHHHHHHHH
Confidence 566788999999999999999999988875 57777788888 88888888 788888777653
No 73
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.0013 Score=41.40 Aligned_cols=41 Identities=39% Similarity=0.743 Sum_probs=33.6
Q ss_pred cccccccccccCCCeecccCC-cchHHhHhcCCC-----CCCCCcccc
Q 020453 24 LSCMICQALLFECSKCTPCSH-VYCKACISRFKD-----CPLCGADIE 65 (326)
Q Consensus 24 l~C~iC~~~l~~~p~~l~C~h-~fC~~Cl~~~~~-----CP~Cr~~~~ 65 (326)
-.|.||.+- ..+.+..-||| -+|..|-.+.|. ||.||.++.
T Consensus 8 dECTICye~-pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEH-PVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccC-cchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 469999998 56689999999 458889877764 999998765
No 74
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.45 E-value=0.034 Score=32.42 Aligned_cols=30 Identities=37% Similarity=0.637 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRD 242 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~ 242 (326)
..+|+.+...+|++++|+.+|++++.+.++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 468999999999999999999999977665
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.38 E-value=0.095 Score=43.76 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=46.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCC
Q 020453 216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKP 295 (326)
Q Consensus 216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p 295 (326)
++.+....+++++|+..|+++++. .+. ....+.+++.++...|++++|++.+++++... ..+
T Consensus 71 la~~~~~~~~~~~A~~~~~~al~~-------~~~-------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~ 132 (234)
T TIGR02521 71 LALYYQQLGELEKAEDSFRRALTL-------NPN-------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP----LYP 132 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-------CCC-------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc----ccc
Confidence 344444455555555555555443 111 11344556666666677777776666665421 123
Q ss_pred CchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 296 EEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
....+..++ +..+...++..++...|++
T Consensus 133 ~~~~~~~~l--~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 133 QPARSLENA--GLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred cchHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 333344444 5555555566666555543
No 76
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.32 E-value=0.0013 Score=63.67 Aligned_cols=45 Identities=16% Similarity=0.459 Sum_probs=33.8
Q ss_pred CCcccccccccccCC--CeecccCCcchHHhHhcCCC----CCCCCccccc
Q 020453 22 GPLSCMICQALLFEC--SKCTPCSHVYCKACISRFKD----CPLCGADIEK 66 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~--p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~ 66 (326)
.+-.||+|+..+.+. -.-.+|+|.||..|+..|-. ||.||..|..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 355789888763332 22347999999999999963 9999999984
No 77
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.17 E-value=0.21 Score=33.08 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=43.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
++......|++++|+..|++.++ ..+. -...+..+|.++..+|++++|+.+|++++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~-------~~P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK-------QDPD-------NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC-------CSTT-------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-------HCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566777888888887777643 3343 3567788999999999999999999988754
No 78
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.11 E-value=0.067 Score=31.83 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 247 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~ 247 (326)
+...++|+.+....|++++|+..+++++++.+.+.+.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~ 39 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPD 39 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccc
Confidence 35678999999999999999999999999999886654
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.05 E-value=0.13 Score=45.94 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
.....++.+....|++++|+..|.+++++ .+. ....+.++|.++...|++++|++.+++++.
T Consensus 99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-------~P~-------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 99 DAYNYLGIYLTQAGNFDAAYEAFDSVLEL-------DPT-------YNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566666777777777777777766554 122 234566777777777777777777766653
No 80
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.99 E-value=0.0057 Score=56.77 Aligned_cols=43 Identities=28% Similarity=0.840 Sum_probs=37.3
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC---------CCCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK---------DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~---------~CP~Cr~~~~ 65 (326)
++..|.+|.+. -.+++...|-|.||+.|+.++. .||.|...+.
T Consensus 535 ~~~~C~lc~d~-aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 535 GEVECGLCHDP-AEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred CceeecccCCh-hhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 56789999999 6789999999999999997663 3999988776
No 81
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.96 E-value=0.0099 Score=53.32 Aligned_cols=43 Identities=30% Similarity=0.829 Sum_probs=36.5
Q ss_pred CcccccccccccCCCeecccCCcchHHhHhcCC------CCCCCCccccc
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIEK 66 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~------~CP~Cr~~~~~ 66 (326)
+-.|.||-+- -.+-+.=||||-.|..|+..|- .||.||..+..
T Consensus 369 FeLCKICaen-dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 369 FELCKICAEN-DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHHhhcc-CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 3469999998 5668889999999999999885 29999998874
No 82
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.85 E-value=0.086 Score=29.95 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
+..+.++|.++..+|++++|++.|++++++-
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3567889999999999999999999998763
No 83
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=94.80 E-value=0.64 Score=48.51 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
...+++.+....|++++|+..|++++++ .+.+ ...+.++|.++...|++++|++.|+++++
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l-------~Pd~-------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~----- 671 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALEL-------EPNN-------SNYQAALGYALWDSGDIAQSREMLERAHK----- 671 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 3456667777777777777777776554 2221 23455666666666666666666555543
Q ss_pred hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
..|+++.+..++ +..+..+|++..++..|++
T Consensus 672 -l~P~~~~a~~nL--A~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 672 -GLPDDPALIRQL--AYVNQRLDDMAATQHYARL 702 (987)
T ss_pred -hCCCCHHHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence 245555555555 5555556665555555543
No 84
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.79 E-value=0.097 Score=36.24 Aligned_cols=89 Identities=19% Similarity=0.288 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 293 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~ 293 (326)
..++.+....+++++|+..|.++++.. +.. ...+..++.++...|++++|.+.+++++.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------ 63 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-------PDN-------ADAYYNLAAAYYKLGKYEEALEDYEKALEL------ 63 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-------Ccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence 356666667788888888888776542 111 134566788888888888888877766553
Q ss_pred CCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 294 KPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 294 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
.|....+...+ +..+...++..++...|+
T Consensus 64 ~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 64 DPDNAKAYYNL--GLAYYKLGKYEEALEAYE 92 (100)
T ss_pred CCcchhHHHHH--HHHHHHHHhHHHHHHHHH
Confidence 23333344444 555555666666555543
No 85
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.71 E-value=0.11 Score=45.44 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---------HH-HhhcCCCC----------CchhhhHHHHHHHHHHH
Q 020453 208 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR---------RD-AVKRHSNV----------PSQVLDVAVSLAKVADV 267 (326)
Q Consensus 208 ~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~---------~~-~~~~~~~~----------~~~~~~la~~l~~l~~~ 267 (326)
.+++.++.=|.-....++|++|+..|.+++++- |- ..-+..+- +..--.-...+..||.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 345555555666666778888888888888732 10 00000000 00001234567789999
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q 020453 268 DRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~ 287 (326)
|..+|++++|++.|++++++
T Consensus 159 ~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHccCcHHHHHHHHHhhhcc
Confidence 99999999999999888765
No 86
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.60 E-value=0.38 Score=48.09 Aligned_cols=124 Identities=13% Similarity=-0.001 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 020453 168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 247 (326)
Q Consensus 168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~ 247 (326)
+.++...-...|.+.++..+.+.. -++.+....... ..+.+...++++++|+..+++ .....
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~----~~~~Pd~~~a~~-------~~a~~L~~~~~~eeA~~~~~~-------~l~~~ 150 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGI----HQRFPDSSEAFI-------LMLRGVKRQQGIEAGRAEIEL-------YFSGG 150 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHH----HhhCCCcHHHHH-------HHHHHHHHhccHHHHHHHHHH-------HhhcC
Confidence 334444444455555554443332 234454444333 333444444455555554444 44445
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 248 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 248 ~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
+++ +..+..+|.++..+|++++|++.|++++. .+|+.+..+-++ +.....+|+..+|..-|+
T Consensus 151 p~~-------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~------~~p~~~~~~~~~--a~~l~~~G~~~~A~~~~~ 212 (694)
T PRK15179 151 SSS-------AREILLEAKSWDEIGQSEQADACFERLSR------QHPEFENGYVGW--AQSLTRRGALWRARDVLQ 212 (694)
T ss_pred CCC-------HHHHHHHHHHHHHhcchHHHHHHHHHHHh------cCCCcHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence 543 45667778888888888888877776654 345555555555 555555555555544444
No 87
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.58 E-value=1.2 Score=43.12 Aligned_cols=57 Identities=16% Similarity=0.328 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
-+|.++..+++++.|.-.|++++++ ++.+. +.+..+|.+++.+|+.++|+.+|++|.
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~I-------NP~ns-------vi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEI-------NPSNS-------VILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcC-------Cccch-------hHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 4677777777888888888877664 22221 234445555666666666665555443
No 88
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.53 E-value=0.11 Score=40.17 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 020453 215 KIGDLKYYGGDLQAARSYYVRS 236 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~s 236 (326)
.++......+++++|+..|++.
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~ 43 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLL 43 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHH
Confidence 3444444555555555555444
No 89
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.012 Score=55.99 Aligned_cols=56 Identities=21% Similarity=0.398 Sum_probs=39.1
Q ss_pred CCcccccccccccC---CCeecccCCcchHHhHhcCCC--CCCCCcccc------cccccHHHHHHH
Q 020453 22 GPLSCMICQALLFE---CSKCTPCSHVYCKACISRFKD--CPLCGADIE------KIEADTTLQDVV 77 (326)
Q Consensus 22 ~~l~C~iC~~~l~~---~p~~l~C~h~fC~~Cl~~~~~--CP~Cr~~~~------~~~~n~~l~~~~ 77 (326)
+.+.|+||...|+. .|+.|-|||+.|+.|++.... ||+=+.... ..+.|+.+...+
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~scp~~~De~~~~~~~~e~p~n~alL~~~ 76 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNASCPTKRDEDSSLMQLKEEPRNYALLRRE 76 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhccCCCCccccchhcChhhcchhHHHHHhh
Confidence 46789999876544 499999999999999998754 883222222 256666665444
No 90
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.41 E-value=0.34 Score=45.25 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
.........+++.....+++|++|+..|++++++. +.+. +....+.|+|.+|..+|++++|++.+++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-------Pd~a----eA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-------PNPD----EAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCch----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33345567889999999999999999999998873 2211 122568999999999999999999999999
Q ss_pred HH
Q 020453 286 KR 287 (326)
Q Consensus 286 ~~ 287 (326)
++
T Consensus 140 el 141 (453)
T PLN03098 140 RD 141 (453)
T ss_pred Hh
Confidence 87
No 91
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.36 E-value=0.13 Score=47.25 Aligned_cols=25 Identities=4% Similarity=0.032 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 261 LAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 261 l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
+.++|.++..+|++++|+..|++++
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al 97 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4445555555555555555554444
No 92
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.35 E-value=1.6 Score=46.74 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----------Hhhc-CCCCCchhh------------h-----HHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRD----------AVKR-HSNVPSQVL------------D-----VAVSLAK 263 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~----------~~~~-~~~~~~~~~------------~-----la~~l~~ 263 (326)
....++.+....+++++|+..|++++++.-. +... ..+.....+ + ....+..
T Consensus 387 a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 466 (1157)
T PRK11447 387 AVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ 466 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence 4456788888889999999999988864210 0000 000000000 0 0112334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453 264 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF 323 (326)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (326)
++.++...|++++|++.|++++.+ +|++..+...+ +.++...|+..++...|
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~------~P~~~~~~~~L--A~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLAL------DPGSVWLTYRL--AQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHcCCHHHHHHHH
Confidence 567777888888888888877643 45555444444 44554555554444433
No 93
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.29 E-value=1.8 Score=39.76 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 261 LAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 261 l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
+..++.++...|++++|+..+++++.
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566666666666655555433
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.28 E-value=0.1 Score=44.02 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 294 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~ 294 (326)
-+..++..+|+.+.|...|++++.+. +. -+..+||-|.-+-.+|++++|..+|.+|+.. ..-
T Consensus 74 ~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~-------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y 135 (250)
T COG3063 74 VRAHYYQKLGENDLADESYRKALSLA-------PN-------NGDVLNNYGAFLCAQGRPEEAMQQFERALAD----PAY 135 (250)
T ss_pred HHHHHHHHcCChhhHHHHHHHHHhcC-------CC-------ccchhhhhhHHHHhCCChHHHHHHHHHHHhC----CCC
Confidence 34555566666666666666665542 11 1345777776667777777777666655421 122
Q ss_pred CCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 295 PEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 295 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
|...+...|+ +-+..-.|+..++..+|++
T Consensus 136 ~~~s~t~eN~--G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 136 GEPSDTLENL--GLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred CCcchhhhhh--HHHHhhcCCchhHHHHHHH
Confidence 3444455555 5555555666666666654
No 95
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.23 E-value=1.2 Score=44.64 Aligned_cols=91 Identities=16% Similarity=0.122 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
....++.+....|++++|+..|++++++ .+.+ .....+++.++..+|++++|+..|++++.
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l-------~P~~-------~~a~~~La~~l~~~G~~~eA~~~l~~al~----- 346 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLAT-------HPDL-------PYVRAMYARALRQVGQYTAASDEFVQLAR----- 346 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 4556788888888888888888887654 2221 23345677888888888888777655443
Q ss_pred hcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
.+|+...+...+ +..+..+|+..++...|+
T Consensus 347 -~~P~~~~~~~~~--a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 347 -EKGVTSKWNRYA--AAALLQAGKTSEAESVFE 376 (656)
T ss_pred -hCccchHHHHHH--HHHHHHCCCHHHHHHHHH
Confidence 244443333222 334444555555544443
No 96
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.22 E-value=0.35 Score=44.80 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
.+++=+||-....++.+++|+..|-+.+.+.... +..|-.++.+|+.+.+..+|+++|-++.++
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~il~nn--------------~evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAILLNN--------------AEVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 3455677777777888888888888887775532 445677888999999988999888776543
No 97
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.023 Score=50.63 Aligned_cols=43 Identities=30% Similarity=0.862 Sum_probs=35.7
Q ss_pred CcccccccccccCCCeecccCCc-chHHhHhcCC----CCCCCCccccc
Q 020453 23 PLSCMICQALLFECSKCTPCSHV-YCKACISRFK----DCPLCGADIEK 66 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~-fC~~Cl~~~~----~CP~Cr~~~~~ 66 (326)
...|-||+.- ..+-+.|||.|. .|..|..... .||.||..+..
T Consensus 290 gkeCVIClse-~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSE-SRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecC-CcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 6789999999 466999999995 4999987663 49999998763
No 98
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.77 E-value=0.074 Score=47.19 Aligned_cols=60 Identities=23% Similarity=0.618 Sum_probs=43.5
Q ss_pred CcccCCcccccccccccCCCeeccc--CCcchHHhHhcC-CCCCCCCcccccccccHHHHHHHHHH
Q 020453 18 SFKIGPLSCMICQALLFECSKCTPC--SHVYCKACISRF-KDCPLCGADIEKIEADTTLQDVVDRF 80 (326)
Q Consensus 18 ~~~~~~l~C~iC~~~l~~~p~~l~C--~h~fC~~Cl~~~-~~CP~Cr~~~~~~~~n~~l~~~~~~~ 80 (326)
.+..+.|.||||.+.+ . |-+..| ||.-|..|-.+. ..||.||..+..+ .+..+..+++..
T Consensus 43 ~~~~~lleCPvC~~~l-~-~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~-R~~amEkV~e~~ 105 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPL-S-PPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNI-RCRAMEKVAEAV 105 (299)
T ss_pred ccchhhccCchhhccC-c-ccceecCCCcEehhhhhhhhcccCCccccccccH-HHHHHHHHHHhc
Confidence 3456889999999995 5 445555 899999999544 5699999998844 455555555543
No 99
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.67 E-value=0.047 Score=46.09 Aligned_cols=60 Identities=25% Similarity=0.585 Sum_probs=40.5
Q ss_pred CcccccccccccCC-CeecccCCcchHHhHhcCC--CCCCCCcccccccccHHHHHHHHHHHh
Q 020453 23 PLSCMICQALLFEC-SKCTPCSHVYCKACISRFK--DCPLCGADIEKIEADTTLQDVVDRFIE 82 (326)
Q Consensus 23 ~l~C~iC~~~l~~~-p~~l~C~h~fC~~Cl~~~~--~CP~Cr~~~~~~~~n~~l~~~~~~~~~ 82 (326)
...|-.|...-... -..+.|+|.||..|..... .||.|++.+..+..|..+..-+-.++.
T Consensus 3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir~i~l~~slp~~ik~~F~ 65 (233)
T KOG4739|consen 3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIRIIQLNRSLPTDIKSYFA 65 (233)
T ss_pred eEEeccccccCCCCceeeeechhhhhhhhcccCCccccccccceeeeeecccccchhHHHHcc
Confidence 45677777652122 3456899999999997654 499999998765555555554444443
No 100
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=93.66 E-value=0.86 Score=41.99 Aligned_cols=27 Identities=19% Similarity=0.076 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLN 238 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~ 238 (326)
....++.+....+++++|+..|.++++
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEK 169 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 344556666666777777776666544
No 101
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.54 E-value=0.45 Score=37.94 Aligned_cols=56 Identities=5% Similarity=-0.105 Sum_probs=26.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
++......|++++|...|+-...+ ++. ...-.-+||.++..+|++++|+..|..+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~-------Dp~-------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIY-------DAW-------SFDYWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-------Ccc-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444555666666555544322 111 12233344555555555555555555443
No 102
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.46 E-value=0.24 Score=28.00 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
..+-.+|.++..+|++++|++.|++++++-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456778999999999999999999998874
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.39 E-value=0.29 Score=46.53 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH------HHHhhcCCCCCchhhhH--------------HHHHHHHHHHHHhcCC
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVR------RDAVKRHSNVPSQVLDV--------------AVSLAKVADVDRSIGN 273 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~------~~~~~~~~~~~~~~~~l--------------a~~l~~l~~~~~~~~~ 273 (326)
.-||.|.+..+++++|+..|+.+|... -...+...++...--+- +++-.|||.-+.++|.
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh
Confidence 467888888899999999999998743 11111111111111111 1222446666666677
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020453 274 EDVAVDGFQEAIKRLES 290 (326)
Q Consensus 274 ~~~a~~~~~~~~~~~~~ 290 (326)
|++|+++|-.|+.+.+.
T Consensus 514 ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 514 YKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 77777766666666644
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=93.29 E-value=0.68 Score=36.48 Aligned_cols=91 Identities=19% Similarity=0.135 Sum_probs=64.8
Q ss_pred HHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020453 172 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 251 (326)
Q Consensus 172 C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~ 251 (326)
+......++...+...+..+. .+.+.. ......++.+....|++++|+..|.+++++ .+.+
T Consensus 31 g~~~~~~g~~~~A~~~~~~al----~~~P~~-------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-------~p~~- 91 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLV----MAQPWS-------WRAHIALAGTWMMLKEYTTAINFYGHALML-------DASH- 91 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHH----HcCCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------CCCC-
Confidence 344446677777766655433 233333 234567888888999999999999998765 2332
Q ss_pred chhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 252 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 252 ~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
+..+.++|.++..+|++++|++.|++++.+
T Consensus 92 ------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 92 ------PEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred ------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778899999999999999999887653
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=93.26 E-value=1.7 Score=37.04 Aligned_cols=168 Identities=12% Similarity=-0.027 Sum_probs=90.0
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+... +...+... .........+.+....++...+....+.+.+.. +....+
T Consensus 42 ~~~~~~~~~~A~~~~~~~-------~~~~p~~~----~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~ 106 (235)
T TIGR03302 42 EALDSGDYTEAIKYFEAL-------ESRYPFSP----YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH----PNHPDA 106 (235)
T ss_pred HHHHcCCHHHHHHHHHHH-------HHhCCCch----hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----cCCCch
Confidence 456678888877666422 11111111 111233344556666777777777776655432 222221
Q ss_pred HHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHHhhcCCCCCch---hhh-------HHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYG--------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQ---VLD-------VAVSLAKVADV 267 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~--------~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~---~~~-------la~~l~~l~~~ 267 (326)
....-.++.+.... +++++|+..|++.++. .+.+... ... +....-.++..
T Consensus 107 ----~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 107 ----DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-------YPNSEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred ----HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233444444333 5666777777666543 2222111 011 11111256788
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 268 DRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
+...|++.+|+..|++++... ...|..+....++ +..+.-+|+..++.++++
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~a~~~l--~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENY---PDTPATEEALARL--VEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHC---CCCcchHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence 999999999998888777654 2234444555556 666667777776666554
No 106
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.045 Score=49.49 Aligned_cols=43 Identities=26% Similarity=0.685 Sum_probs=34.2
Q ss_pred CcccccccccccC----CCeecccCCcchHHhHhcCC------CCCCCCcccc
Q 020453 23 PLSCMICQALLFE----CSKCTPCSHVYCKACISRFK------DCPLCGADIE 65 (326)
Q Consensus 23 ~l~C~iC~~~l~~----~p~~l~C~h~fC~~Cl~~~~------~CP~Cr~~~~ 65 (326)
..+||||++-.-. .-+.+.|||-|-..||++|. .||.|.....
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 4689999996322 15678999999999999995 4999986654
No 107
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.20 E-value=0.22 Score=38.31 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=42.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 220 KYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 220 ~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
...-|+++.|+..|.+++.+.- + -++.+||-+..+..+|+-++|++-+++++++-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P-------~-------raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAP-------E-------RASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcc-------c-------chHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3556789999999999887631 1 25678888888999999888888888887764
No 108
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.043 Score=48.17 Aligned_cols=51 Identities=22% Similarity=0.464 Sum_probs=36.5
Q ss_pred CCCCCCCc--ccCCcccccccccccCCCeeccc-CCcchHHhHhcCC----CCCCCCcc
Q 020453 12 FGYDAQSF--KIGPLSCMICQALLFECSKCTPC-SHVYCKACISRFK----DCPLCGAD 63 (326)
Q Consensus 12 ~~~~~~~~--~~~~l~C~iC~~~l~~~p~~l~C-~h~fC~~Cl~~~~----~CP~Cr~~ 63 (326)
..+..... ..+.-.||+|+.. ..+|..+.- |-.||..|+-.+. .||+-..+
T Consensus 287 ~~~~se~e~l~~~~~~CpvClk~-r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 287 KQYNSESELLPPDREVCPVCLKK-RQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred hhcccccccCCCccccChhHHhc-cCCCceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 34444443 3356789999998 677888776 9999999998775 39874443
No 109
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=93.03 E-value=1.6 Score=44.43 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.+.+++.++...|+ .+|+.++++++.+ .|+++.+...+ +..+...|++.+++.+|++
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKL------APNIPAILDTL--GWLLVEKGEADRALPLLRK 862 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhh------CCCCcHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 44555555555555 5555555544432 34444444444 4455555555555555543
No 110
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=0.36 Score=44.08 Aligned_cols=76 Identities=9% Similarity=0.101 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhh-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL-DVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~-~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
+...+.-|+.....++|..|...|++++...........+.....- -....+.||+.++..++.+.+|++.-++++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455667888889999999999999998865422111111111111 234456678888888877776665544433
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=92.93 E-value=0.27 Score=41.15 Aligned_cols=92 Identities=17% Similarity=0.198 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADV-DRSIGN--EDVAVDGFQEAIKRL 288 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~-~~~~~~--~~~a~~~~~~~~~~~ 288 (326)
....++.+....+++++|+..|++++++. +.+ ...+..+|.+ +...|+ +.+|.+.+++++
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------P~~-------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al--- 137 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQLR-------GEN-------AELYAALATVLYYQAGQHMTPQTREMIDKAL--- 137 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCC-------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH---
Confidence 45678888899999999999999887653 222 2344555654 345455 244444444333
Q ss_pred HHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 289 ESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 289 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
..+|.+...+..+ +......|++.+++..|++
T Consensus 138 ---~~dP~~~~al~~L--A~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 138 ---ALDANEVTALMLL--ASDAFMQADYAQAIELWQK 169 (198)
T ss_pred ---HhCCCChhHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 4456666666666 6666667777777666554
No 112
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.88 E-value=0.34 Score=27.21 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
..+..+|.++..+|++++|++.+++++.+-
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456788999999999999999999998763
No 113
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=92.75 E-value=0.88 Score=33.70 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
.++......+++++|+..|.+.++. .+.+. ......-.+|.++...|+++.|+..|++++.
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKK-------YPKST----YAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-------CCCcc----ccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3445555667777777777776532 11110 1123344567777777777777777766654
No 114
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=92.64 E-value=0.084 Score=37.26 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHh
Q 020453 223 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ 302 (326)
Q Consensus 223 ~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~ 302 (326)
.++++.|+..|++.++.... +. ....+-++|.++..+|++++|++.+++ .. .++.+....-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-------~~-----~~~~~~~la~~~~~~~~y~~A~~~~~~-~~------~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-------NP-----NSAYLYNLAQCYFQQGKYEEAIELLQK-LK------LDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-------TH-----HHHHHHHHHHHHHHTTHHHHHHHHHHC-HT------HHHCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-------Ch-----hHHHHHHHHHHHHHCCCHHHHHHHHHH-hC------CCCCCHHHHH
Confidence 56788888888888766432 00 122344589999999999999988877 11 1122222232
Q ss_pred hccchhhhHHHHhHHhcCcccccC
Q 020453 303 RCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
-+ +..+..++++.+++..|++|
T Consensus 63 l~--a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LL--ARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HH--HHHHHHTT-HHHHHHHHHHH
T ss_pred HH--HHHHHHhCCHHHHHHHHhcC
Confidence 23 66677777888887776653
No 115
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=0.06 Score=48.78 Aligned_cols=55 Identities=29% Similarity=0.710 Sum_probs=36.9
Q ss_pred CCccccccccccc--CCCeecccCCcchHHhHhcCC------------CCCCCCcccccccccHHHHHHHH
Q 020453 22 GPLSCMICQALLF--ECSKCTPCSHVYCKACISRFK------------DCPLCGADIEKIEADTTLQDVVD 78 (326)
Q Consensus 22 ~~l~C~iC~~~l~--~~p~~l~C~h~fC~~Cl~~~~------------~CP~Cr~~~~~~~~n~~l~~~~~ 78 (326)
..+.|.||++... ..-+.+||+|.||++|+..++ .||.+...-. .+.-.++++++
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~--a~~g~vKelvg 251 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSV--APPGQVKELVG 251 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCccc--CCchHHHHHHH
Confidence 4678999998621 236789999999999998774 3888654433 22225555543
No 116
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=0.05 Score=46.42 Aligned_cols=56 Identities=21% Similarity=0.558 Sum_probs=40.0
Q ss_pred CCCCCCCCCCCcccCCcccccccccccC---------CCeecccCCcchHHhHhcCC------CCCCCCcccc
Q 020453 8 PKCPFGYDAQSFKIGPLSCMICQALLFE---------CSKCTPCSHVYCKACISRFK------DCPLCGADIE 65 (326)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~C~iC~~~l~~---------~p~~l~C~h~fC~~Cl~~~~------~CP~Cr~~~~ 65 (326)
+-=|.|.++... +.-.|.+|...+.. +-..|.|+|+|=..||..|- .||.|++.+.
T Consensus 211 fYs~~glPtkhl--~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 211 FYSPSGLPTKHL--SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred ccCCCCCCCCCC--CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 333445554443 35679999987433 13478999999999999994 2999998776
No 117
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=92.54 E-value=3.7 Score=31.24 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc-hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-h
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS-QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-T 292 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~-~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~ 292 (326)
.+++.....++.-.++-.|++++.+.++.......+.. .++--+.+--|||..|+.+|+-+=++.|++=|.+..-.| .
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiP 85 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIP 85 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhcc
Confidence 45566666778888899999999998887433333222 223344566799999999999999999999888877776 2
Q ss_pred cC--CCchhHHhhccchhhhHHHHhHHhc
Q 020453 293 LK--PEEAGLEQRCWNSSTTNFQKNHLNQ 319 (326)
Q Consensus 293 ~~--p~~~~~~~~~~~~~~~~~~~~~~~~ 319 (326)
.- ++-.++...+ +-...-+-++++-
T Consensus 86 QCp~~~C~afi~sL--GCCk~ALl~F~KR 112 (140)
T PF10952_consen 86 QCPNTECEAFIDSL--GCCKKALLDFMKR 112 (140)
T ss_pred CCCCcchHHHHHhh--hccHHHHHHHHHh
Confidence 22 2234456555 4444444444443
No 118
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.49 E-value=0.083 Score=32.89 Aligned_cols=39 Identities=23% Similarity=0.598 Sum_probs=17.2
Q ss_pred cccccccc-cCCCeec--ccCCcchHHhHhcCC-----CCCCCCccc
Q 020453 26 CMICQALL-FECSKCT--PCSHVYCKACISRFK-----DCPLCGADI 64 (326)
Q Consensus 26 C~iC~~~l-~~~p~~l--~C~h~fC~~Cl~~~~-----~CP~Cr~~~ 64 (326)
||+|.+.+ .++-..+ +||..+|+.|..... .||-||+..
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 67887764 1222222 589999999976554 399999864
No 119
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=92.35 E-value=1.1 Score=39.54 Aligned_cols=107 Identities=13% Similarity=0.077 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-------HHhhc--CCCCCchhhhHHH-----------HHHHHHHHHHhc
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRR-------DAVKR--HSNVPSQVLDVAV-----------SLAKVADVDRSI 271 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~-------~~~~~--~~~~~~~~~~la~-----------~l~~l~~~~~~~ 271 (326)
.....+.+....|+.++|+..|+++++..- ...-. ...+......+.. ....+|.++..+
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 345677788888999999999999888431 11000 0010000001111 113367888888
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 272 GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 272 ~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
|++++|+.+|++++ ..+|.++.++..+ +.++.-.|+...+...+++|
T Consensus 228 g~~~~Al~~~~~~~------~~~p~d~~~~~~~--a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 228 GRYEEALEYLEKAL------KLNPDDPLWLLAY--ADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp T-HHHHHHHHHHHH------HHSTT-HHHHHHH--HHHHT---------------
T ss_pred cccccccccccccc------ccccccccccccc--cccccccccccccccccccc
Confidence 99888888877644 3467787888888 88888888888887776653
No 120
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=0.054 Score=46.84 Aligned_cols=41 Identities=24% Similarity=0.706 Sum_probs=31.2
Q ss_pred ccccccccccCCCee----cccCCcchHHhHhcCCC-----CCCCCcccc
Q 020453 25 SCMICQALLFECSKC----TPCSHVYCKACISRFKD-----CPLCGADIE 65 (326)
Q Consensus 25 ~C~iC~~~l~~~p~~----l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~ 65 (326)
.||+|.-.-+.+|-+ -+|+|+.|.+|....+. ||.|...+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 488988633444432 38999999999988763 999998776
No 121
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.26 E-value=0.065 Score=47.51 Aligned_cols=46 Identities=28% Similarity=0.530 Sum_probs=35.0
Q ss_pred cccCCcccccccccccCCCeecccCCcchHHhHhcCC-C---CCCCCcccc
Q 020453 19 FKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-D---CPLCGADIE 65 (326)
Q Consensus 19 ~~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-~---CP~Cr~~~~ 65 (326)
...++-.||||..- .-..+..||+|.-|+.||.+.. . |=.|+..+.
T Consensus 418 p~sEd~lCpICyA~-pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 418 PDSEDNLCPICYAG-PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CCcccccCcceecc-cchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 34578899999887 3448889999999999998874 2 655665544
No 122
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=92.06 E-value=0.48 Score=50.62 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNV 239 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~ 239 (326)
.....++.+....+++++|+..|++++++
T Consensus 304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKALAL 332 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567888999999999999999998864
No 123
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.78 E-value=1.8 Score=31.26 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=48.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 222 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 222 ~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
..++|.+|+..+.+............. .......+-+++.++...|++++|+..+++++.+-++.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~-----~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSS-----NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchh-----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 357888888888887776544322221 22344556678999999999999999999999999875
No 124
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.59 E-value=0.63 Score=26.19 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVR 240 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~ 240 (326)
....++|.+...++++++|+..|++++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356789999999999999999999999863
No 125
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=91.59 E-value=1.5 Score=30.25 Aligned_cols=43 Identities=23% Similarity=0.317 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCch
Q 020453 256 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEA 298 (326)
Q Consensus 256 ~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~~ 298 (326)
+.|..+...|-.....|++++|+..|+++++.+.++ ...||..
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 356677777888888999999999999999999998 6667764
No 126
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.37 E-value=0.11 Score=46.95 Aligned_cols=43 Identities=21% Similarity=0.484 Sum_probs=32.6
Q ss_pred CCccccccccccc--CCCeecccCCcchHHhHhcCC-------CCCCCCccc
Q 020453 22 GPLSCMICQALLF--ECSKCTPCSHVYCKACISRFK-------DCPLCGADI 64 (326)
Q Consensus 22 ~~l~C~iC~~~l~--~~p~~l~C~h~fC~~Cl~~~~-------~CP~Cr~~~ 64 (326)
..|.|||=.+.-- ++|..|.|||..|+.-+.+.. .||.|....
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 4688998555311 369999999999999997663 499998654
No 127
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=91.31 E-value=1.1 Score=30.17 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=42.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 217 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 217 ~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
..+....+++++|+..+++++++ .+.+ ...+...|.++..+|++++|.+.++++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~-------~p~~-------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL-------DPDD-------PELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-------Cccc-------chhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667778899998888888766 3332 234556789999999999999988887743
No 128
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.25 E-value=1.1 Score=30.69 Aligned_cols=61 Identities=13% Similarity=0.257 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
....++.+....+++++|+..|.+++++. +... ..+..++.++...|++++|...+.+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELD-------PDNA-------KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------Ccch-------hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 44567777777788888888888876542 2211 4456778888888998888888877654
No 129
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.23 E-value=0.1 Score=51.73 Aligned_cols=40 Identities=30% Similarity=0.786 Sum_probs=34.6
Q ss_pred cccccccccccCCCeecccCCcchHHhHhcCCC------CCCCCcccc
Q 020453 24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD------CPLCGADIE 65 (326)
Q Consensus 24 l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~------CP~Cr~~~~ 65 (326)
..|++|.+ .+.++..+|+|.||..|+...+. ||.||....
T Consensus 455 ~~c~ic~~--~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD--LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc--cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 79999999 37799999999999999988763 999986654
No 130
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=1.7 Score=40.67 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
.....+|+.+..+++.++|+..|.+++..-. .+ ...+..||.+++.+++.++|..+|.+-++....
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~d------te--------~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~ 498 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLGD------TE--------GSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL 498 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhccc------cc--------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999865422 12 356888999999999999999999999887743
No 131
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.95 E-value=0.14 Score=43.11 Aligned_cols=44 Identities=18% Similarity=0.400 Sum_probs=35.7
Q ss_pred CCcccccccccccCC---CeecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453 22 GPLSCMICQALLFEC---SKCTPCSHVYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~---p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
..+.||+|.+.|-+. -+.-||||.||..|.+.++. ||.|..+..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 457899999986332 45568999999999999864 999998876
No 132
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.81 E-value=5.5 Score=38.42 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC-CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~-~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
|.+-+....|+|.+|++.+++++.+-++.+.....+ .....++...--.++.++..+|+.++|...|...+.
T Consensus 180 N~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 180 NTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 445566677999999999999999988877655444 333344555556789999999999999988775543
No 133
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=90.78 E-value=1.4 Score=40.52 Aligned_cols=52 Identities=10% Similarity=0.138 Sum_probs=30.4
Q ss_pred HhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 177 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 239 (326)
Q Consensus 177 ~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~ 239 (326)
..+++..++..++.+... .+... ....+++.+...++++++|+..+++++++
T Consensus 14 ~~~~~~~Ai~~~~~Al~~----~P~~~-------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l 65 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDL----DPNNA-------ELYADRAQANIKLGNFTEAVADANKAIEL 65 (356)
T ss_pred HcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445556666555554432 22222 23346666677777888888877777665
No 134
>PRK11189 lipoprotein NlpI; Provisional
Probab=90.75 E-value=2.6 Score=37.61 Aligned_cols=92 Identities=21% Similarity=0.213 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453 170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 249 (326)
Q Consensus 170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~ 249 (326)
..+......++...+...++.+.+ +.+.. .....+++.+....|++++|+..|++.+++ .+.
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~-------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-------~P~ 164 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLE----LDPTY-------NYAYLNRGIALYYGGRYELAQDDLLAFYQD-------DPN 164 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCC
Confidence 333444445555555544443332 22322 234567899999999999999999998754 333
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 250 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 250 ~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
+. . ..-++ .+....+++++|++.++++...
T Consensus 165 ~~------~-~~~~~-~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 165 DP------Y-RALWL-YLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred CH------H-HHHHH-HHHHccCCHHHHHHHHHHHHhh
Confidence 21 0 11111 2344567889999888776533
No 135
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.68 E-value=0.7 Score=27.31 Aligned_cols=34 Identities=12% Similarity=0.358 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 245 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~ 245 (326)
....+|++....++|++|+..|.++++++++...
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 4567899999999999999999999999987654
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=90.38 E-value=0.73 Score=36.21 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 294 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~ 294 (326)
.++.+....|++++|+..|++.++.. +.. ....+ ..-+|+.++...|++++|+..++. +...
T Consensus 53 ~lA~~~~~~g~~~~A~~~l~~~~~~~-------~d~--~l~~~--a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~ 114 (145)
T PF09976_consen 53 QLAKAAYEQGDYDEAKAALEKALANA-------PDP--ELKPL--ARLRLARILLQQGQYDEALATLQQ-------IPDE 114 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC-------CCH--HHHHH--HHHHHHHHHHHcCCHHHHHHHHHh-------ccCc
Confidence 46778888899999999998876532 110 01111 233578999999998888876643 3222
Q ss_pred CCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 295 PEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 295 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
+..+...... +.++.-.|+..++...|++|
T Consensus 115 ~~~~~~~~~~--Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 115 AFKALAAELL--GDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred chHHHHHHHH--HHHHHHCCCHHHHHHHHHHh
Confidence 2233344434 77777888888887777664
No 137
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=90.33 E-value=0.73 Score=40.40 Aligned_cols=87 Identities=9% Similarity=0.055 Sum_probs=53.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHH
Q 020453 222 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE 301 (326)
Q Consensus 222 ~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~ 301 (326)
..++|++|+..|++.++ ..+... .....+-|+|.++...|++++|+..|+..+... ..+|.....+
T Consensus 155 ~~~~y~~Ai~af~~fl~-------~yP~s~----~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~~dAl 220 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVK-------KYPDST----YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKAADAM 220 (263)
T ss_pred hcCCHHHHHHHHHHHHH-------HCcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcchhHHH
Confidence 34667776666665543 344322 224556799999999999999998877666544 2334344455
Q ss_pred hhccchhhhHHHHhHHhcCcccc
Q 020453 302 QRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
..+ +.++..+++..++...|+
T Consensus 221 ~kl--g~~~~~~g~~~~A~~~~~ 241 (263)
T PRK10803 221 FKV--GVIMQDKGDTAKAKAVYQ 241 (263)
T ss_pred HHH--HHHHHHcCCHHHHHHHHH
Confidence 445 555556666666655543
No 138
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.28 E-value=1.8 Score=35.37 Aligned_cols=79 Identities=9% Similarity=0.092 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHhhccchh
Q 020453 230 RSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWNSS 308 (326)
Q Consensus 230 ~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~~~~~~~~~~~~ 308 (326)
+-.|+++.+..+.....++.+...+......|-.|+. .....++.+.++++++-++.. ..+|..+..+-++ +.
T Consensus 4 l~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAq----fk~g~es~~miedAisK~eeAL~I~P~~hdAlw~l--Gn 77 (186)
T PF06552_consen 4 LLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQ----FKQGPESKKMIEDAISKFEEALKINPNKHDALWCL--GN 77 (186)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHh----ccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHH--HH
Confidence 3467888888888888888865444444444444432 244456778888888888887 7788888877777 55
Q ss_pred hhHHHH
Q 020453 309 TTNFQK 314 (326)
Q Consensus 309 ~~~~~~ 314 (326)
.+..++
T Consensus 78 A~ts~A 83 (186)
T PF06552_consen 78 AYTSLA 83 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 139
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=90.19 E-value=1.5 Score=43.79 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
..+.++|.++..+|++++|+..+++++.+ +|++..+..++ +..+..+|++.+++..|+
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l------~P~~~~a~~~L--a~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLAT------HPDLPYVRAMY--ARALRQVGQYTAASDEFV 342 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHCCCHHHHHHHHH
Confidence 45667788888889988888888776653 56665555555 555555555555554443
No 140
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.12 E-value=0.13 Score=39.17 Aligned_cols=44 Identities=23% Similarity=0.648 Sum_probs=35.9
Q ss_pred CCcccccccccccCCCeecc----cCCcchHHhHhcCCC-------CCCCCccccc
Q 020453 22 GPLSCMICQALLFECSKCTP----CSHVYCKACISRFKD-------CPLCGADIEK 66 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~----C~h~fC~~Cl~~~~~-------CP~Cr~~~~~ 66 (326)
....|.||.+.. .+..-|. ||-+.|..|--..|. ||.|+.++.+
T Consensus 79 ~lYeCnIC~etS-~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETS-AEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCccccc-chhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 456899999994 5555553 999999999998884 9999998874
No 141
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.11 E-value=4.9 Score=41.71 Aligned_cols=103 Identities=15% Similarity=0.069 Sum_probs=66.3
Q ss_pred HhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhh
Q 020453 177 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 256 (326)
Q Consensus 177 ~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~ 256 (326)
..++...+..+.+.+.......+... ........++.+....|++++|...+++++++.+....... ..
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~-----~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~------~~ 571 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYH-----YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL------PM 571 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc------cH
Confidence 34555556555555554444433311 12234567888888999999999999999988765432111 01
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
.+.....++.++...|++++|...+++++.+.+.
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 1222445677777889999999998888887654
No 142
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.03 E-value=1.1 Score=25.03 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNV 239 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~ 239 (326)
..-.++.+....+++++|+..|++++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999876
No 143
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.97 E-value=11 Score=38.20 Aligned_cols=78 Identities=18% Similarity=0.142 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH----hhcCCCC---Cchhh-hHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDA----VKRHSNV---PSQVL-DVAVSLAKVADVDRSIGNEDVAVDGFQEA 284 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~----~~~~~~~---~~~~~-~la~~l~~l~~~~~~~~~~~~a~~~~~~~ 284 (326)
.+..+.-..+.|+.+.|+.+|..+-.-.-.+ ....... +.... +.| .--.||..|++.|+..+|+.+|.+|
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~A-AcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKA-ACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHH-HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3445555577899999999999876522100 0000000 00011 122 2235788999999999999999888
Q ss_pred HHHHHHh
Q 020453 285 IKRLESL 291 (326)
Q Consensus 285 ~~~~~~l 291 (326)
...-.-+
T Consensus 994 qafsnAI 1000 (1416)
T KOG3617|consen 994 QAFSNAI 1000 (1416)
T ss_pred HHHHHHH
Confidence 6655433
No 144
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.97 E-value=0.13 Score=46.04 Aligned_cols=43 Identities=30% Similarity=0.824 Sum_probs=32.5
Q ss_pred CCcccccccccccCCCeecccCCcch-HHhHhcCCCCCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYC-KACISRFKDCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC-~~Cl~~~~~CP~Cr~~~~ 65 (326)
....|.||.+- +.+-+-+||||..| ..|-+....||.||....
T Consensus 304 ~p~lcVVcl~e-~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDE-PKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCC-ccceeeecCCcEEEchHHHhhCCCCchhHHHHH
Confidence 45689999998 45599999999765 334455567999997654
No 145
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=89.81 E-value=7.4 Score=39.60 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 020453 215 KIGDLKYYGGDLQAARSYYVRS 236 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~s 236 (326)
.+..+....+++++|+..+.+.
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555556666666655544
No 146
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.73 E-value=5.6 Score=36.23 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHH-----HHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV-----AVDGFQEA 284 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~-----a~~~~~~~ 284 (326)
+.....+++|+.+.++.+.|...|+++..++..+.++..+ +..+.-.+..++.+.-..+ |+++.++.
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq--------v~al~g~Akc~~~~r~~~k~~~Crale~n~r~ 317 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ--------VEALDGAAKCLETLRLQNKICNCRALEFNTRL 317 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH--------HHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 4456678999999999999999999999999887777644 3344444544544444444 88888887
Q ss_pred HHHHHHh
Q 020453 285 IKRLESL 291 (326)
Q Consensus 285 ~~~~~~l 291 (326)
+++-.++
T Consensus 318 levA~~I 324 (518)
T KOG1941|consen 318 LEVASSI 324 (518)
T ss_pred HHHHHHh
Confidence 7777665
No 147
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.61 E-value=0.85 Score=40.72 Aligned_cols=26 Identities=19% Similarity=0.108 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLN 238 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~ 238 (326)
++.|++.+..+|-+..|...|+.+++
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~ 251 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLT 251 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhh
Confidence 35688888888988888888888876
No 148
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=89.61 E-value=0.049 Score=36.71 Aligned_cols=38 Identities=39% Similarity=0.834 Sum_probs=22.5
Q ss_pred CcccccccccccCCCeecccCCcchHHhHhcCCC---CCCCCcccc
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKD---CPLCGADIE 65 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~---CP~Cr~~~~ 65 (326)
++.||.|...| + +.. ++-+|..|-..+.. ||.|..++.
T Consensus 1 e~~CP~C~~~L-~-~~~---~~~~C~~C~~~~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQEL-E-WQG---GHYHCEACQKDYKKEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBE-E-EET---TEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred CCcCCCCCCcc-E-EeC---CEEECccccccceecccCCCcccHHH
Confidence 47899999985 4 444 88889999987753 999998865
No 149
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.41 E-value=5.8 Score=35.63 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=11.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 020453 264 VADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
++.+++.+++++.|+++|+.+++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk 318 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLK 318 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHh
Confidence 34445555555555555554443
No 150
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.19 E-value=1.3 Score=24.76 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRR 241 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~ 241 (326)
..-.++.+...++++++|+..|++++++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456789999999999999999999998753
No 151
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.06 E-value=1.2 Score=42.47 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 283 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~ 283 (326)
..|++|.....-.+.++|++.|.++++++ +..+-..+.++.+.-|+|.-.+..+.+-.|+...+.
T Consensus 466 lWNRLGAtLAN~~~s~EAIsAY~rALqLq-------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 466 LWNRLGATLANGNRSEEAISAYNRALQLQ-------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHhhHHhcCCcccHHHHHHHHHHHhcC-------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 56788888877789999999999998863 444444556777777777666666666666665544
No 152
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=88.98 E-value=7.6 Score=32.35 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHHHHH
Q 020453 165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL-KYYGGD--LQAARSYYVRSLNVRR 241 (326)
Q Consensus 165 ~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l-~~~~~~--~~~a~~~~~~sl~~~~ 241 (326)
.+.+..++......++...+...++.+.. +.+...++ ...++.+ ....++ +++|+..|+++++
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----l~P~~~~~-------~~~lA~aL~~~~g~~~~~~A~~~l~~al~--- 138 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQ----LRGENAEL-------YAALATVLYYQAGQHMTPQTREMIDKALA--- 138 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHH-------HHHHHHHHHHhcCCCCcHHHHHHHHHHHH---
Confidence 34455566666677888877766654443 44544443 3455554 345555 4677776666644
Q ss_pred HHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 242 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
..+.+ ...+.++|..+..+|++++|+..++++++..
T Consensus 139 ----~dP~~-------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 139 ----LDANE-------VTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred ----hCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34443 3567888999999999999999999886654
No 153
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.85 E-value=9.7 Score=32.63 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=20.8
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHH
Q 020453 214 NKIGDLKYY-GGDLQAARSYYVRSLNVRR 241 (326)
Q Consensus 214 ~~l~~l~~~-~~~~~~a~~~~~~sl~~~~ 241 (326)
-.|++++.+ +.++++|+.+|+++-+-.+
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 367777744 4789999999999876544
No 154
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.68 E-value=0.47 Score=40.15 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 223 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 223 ~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
+|++++|..+|+++++. +. ..+...++.|+|.+--..|+...|.++|++++.+.
T Consensus 116 qg~~~eA~q~F~~Al~~--------P~----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 116 QGRPEEAMQQFERALAD--------PA----YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred CCChHHHHHHHHHHHhC--------CC----CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 45677777777776431 11 22356788999988888899999998888887665
No 155
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.57 E-value=7.1 Score=40.55 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
....++.+....|++++|...|+++++..+..... ...+..+.+++.++...|+++.|...+++++.+.+..
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~--------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVY--------HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 45678888888999999999999999876643211 1335577889999999999999999999999988764
No 156
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.53 E-value=2.3 Score=36.51 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=33.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 220 KYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 220 ~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
...+..+.++..+|+++..+..+....+++ +..|.+-+.+.+. .+.++|+++|++++.++++
T Consensus 81 ake~~klsEvvdl~eKAs~lY~E~GspdtA--------AmaleKAak~len-v~Pd~AlqlYqralavve~ 142 (308)
T KOG1585|consen 81 AKELSKLSEVVDLYEKASELYVECGSPDTA--------AMALEKAAKALEN-VKPDDALQLYQRALAVVEE 142 (308)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhCCcchH--------HHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhc
Confidence 333344456666666666665554333332 4455555555555 4556666666666666544
No 157
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=88.37 E-value=12 Score=37.75 Aligned_cols=104 Identities=11% Similarity=-0.050 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 160 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 239 (326)
Q Consensus 160 ~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~ 239 (326)
.+|.|......|..+.....+..++....+.+. ...+... .....++.....+|++++|...|++.++
T Consensus 115 ~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l----~~~p~~~-------~~~~~~a~~l~~~g~~~~A~~~y~~~~~- 182 (694)
T PRK15179 115 RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF----SGGSSSA-------REILLEAKSWDEIGQSEQADACFERLSR- 182 (694)
T ss_pred hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh----hcCCCCH-------HHHHHHHHHHHHhcchHHHHHHHHHHHh-
Confidence 455555554455555544444444443333222 1223333 3445677777888899999999998855
Q ss_pred HHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 240 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 240 ~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
..+.. ...+-++|.++..+|+.++|...|+++++..
T Consensus 183 ------~~p~~-------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 183 ------QHPEF-------ENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred ------cCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 22221 3456667888888899999998888887664
No 158
>PRK12370 invasion protein regulator; Provisional
Probab=88.34 E-value=1.5 Score=42.94 Aligned_cols=60 Identities=12% Similarity=0.003 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
...++.+....+++++|+..|++++++ .+.+ +..+..+|.++...|++++|+..+++++.
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l-------~P~~-------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLL-------SPIS-------ADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345677777788899999988888764 2221 23345566666666776666666665543
No 159
>PF04641 Rtf2: Rtf2 RING-finger
Probab=88.22 E-value=0.36 Score=42.26 Aligned_cols=44 Identities=23% Similarity=0.627 Sum_probs=35.6
Q ss_pred cCCcccccccccccCC----CeecccCCcchHHhHhcCC---CCCCCCcccc
Q 020453 21 IGPLSCMICQALLFEC----SKCTPCSHVYCKACISRFK---DCPLCGADIE 65 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~----p~~l~C~h~fC~~Cl~~~~---~CP~Cr~~~~ 65 (326)
...+.|||....| +. -...+|||.|+..++.... .||.|..++.
T Consensus 111 ~~~~~CPvt~~~~-~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 111 EGRFICPVTGKEF-NGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFT 161 (260)
T ss_pred CceeECCCCCccc-CCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccc
Confidence 4678999999884 42 2334899999999998875 5999999998
No 160
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.17 E-value=1.3 Score=26.14 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
.+..||++-...+++.+|++-|++++++.+++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 46678888888899999999999999999886
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=88.16 E-value=12 Score=29.95 Aligned_cols=105 Identities=12% Similarity=0.000 Sum_probs=73.6
Q ss_pred HHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020453 171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 250 (326)
Q Consensus 171 ~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~ 250 (326)
+..-....|+..++..+++.... +. ..-..-.-+++-+...++++++|+..|.++..+. +++
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~----~D-------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-------~dd 102 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI----YD-------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-------IDA 102 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH----hC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCC
Confidence 33444567777877777654322 22 2223455689999999999999999999986652 222
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhh
Q 020453 251 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQR 303 (326)
Q Consensus 251 ~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~ 303 (326)
....-+.|.++-.+|+.+.|.+.|+.++.... .+|....+.++
T Consensus 103 -------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~---~~~~~~~l~~~ 145 (157)
T PRK15363 103 -------PQAPWAAAECYLACDNVCYAIKALKAVVRICG---EVSEHQILRQR 145 (157)
T ss_pred -------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc---cChhHHHHHHH
Confidence 34667889999999999999999999999884 34555444443
No 162
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=88.12 E-value=0.25 Score=43.18 Aligned_cols=41 Identities=29% Similarity=0.765 Sum_probs=29.9
Q ss_pred ccccccccccCCCeecccCCcchHHhHhcCC--CCCCCCcccc
Q 020453 25 SCMICQALLFECSKCTPCSHVYCKACISRFK--DCPLCGADIE 65 (326)
Q Consensus 25 ~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~--~CP~Cr~~~~ 65 (326)
.|--|---+..=-+++||.|.||..|..... .||.|...+.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHH
Confidence 4667765333336889999999999997554 5999986543
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.11 E-value=1.6 Score=38.38 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=61.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 294 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~ 294 (326)
.+++-....|.-...-..|+.++....+..+-.+.+ ++-+.+-+.+|..+|+++.|++--+.++.+ +
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-------AVyycNRAAAy~~Lg~~~~AVkDce~Al~i------D 145 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-------AVYYCNRAAAYSKLGEYEDAVKDCESALSI------D 145 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-------chHHHHHHHHHHHhcchHHHHHHHHHHHhc------C
Confidence 344444466777777788999999999988888776 456677777888888877777555444433 2
Q ss_pred CCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 295 PEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 295 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
|.-...-.++ +..+..+|++..++..|++|
T Consensus 146 p~yskay~RL--G~A~~~~gk~~~A~~aykKa 175 (304)
T KOG0553|consen 146 PHYSKAYGRL--GLAYLALGKYEEAIEAYKKA 175 (304)
T ss_pred hHHHHHHHHH--HHHHHccCcHHHHHHHHHhh
Confidence 2222233344 55555555555555555543
No 164
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.05 E-value=2.8 Score=39.80 Aligned_cols=106 Identities=22% Similarity=0.213 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------HhhcCCCCCchhhhHHHHHHHHHHHHHhcCCH
Q 020453 207 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD------------AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE 274 (326)
Q Consensus 207 ~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~------------~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~ 274 (326)
..|+..+..+|..+...++++.++.+|++++...+. ...........-.+++.....-|......|+|
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence 346667777888888889999999999998874432 00000000001113344444457788888999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcC
Q 020453 275 DVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQL 320 (326)
Q Consensus 275 ~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (326)
..|+..|.+++. .+|+++.+-.|. +-.+..++++..++
T Consensus 375 ~~Av~~YteAIk------r~P~Da~lYsNR--Aac~~kL~~~~~aL 412 (539)
T KOG0548|consen 375 PEAVKHYTEAIK------RDPEDARLYSNR--AACYLKLGEYPEAL 412 (539)
T ss_pred HHHHHHHHHHHh------cCCchhHHHHHH--HHHHHHHhhHHHHH
Confidence 999999998553 347776666666 66666666555443
No 165
>PRK12370 invasion protein regulator; Provisional
Probab=87.99 E-value=4.9 Score=39.34 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNV 239 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~ 239 (326)
....++.+....|++++|+..|++++++
T Consensus 374 a~~~lg~~l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 374 IKYYYGWNLFMAGQLEEALQTINECLKL 401 (553)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3456777888889999999999988764
No 166
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=87.84 E-value=6.8 Score=34.35 Aligned_cols=65 Identities=23% Similarity=0.336 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
+.-.+|.++...+++++|+..|++.++..- .+. .....+-++|.++..+|++++|...|++.+..
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-------~s~----~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYP-------KSP----KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-------CCc----chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456899999999999999999988765422 211 12445667888999999999999888866543
No 167
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=87.66 E-value=15 Score=38.59 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
...+++.+....|++++|+..|++++++ .+.+ ...+.++|.++..+|++++|+..|++++.+-
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l-------~P~~-------~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKG-------LPDD-------PALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4567888888899999999999988664 3332 4567789999999999999999988887543
No 168
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=87.59 E-value=0.11 Score=35.44 Aligned_cols=43 Identities=26% Similarity=0.729 Sum_probs=18.9
Q ss_pred CcccccccccccCC---Ceec----ccCCcchHHhHhcCC---------------CCCCCCcccc
Q 020453 23 PLSCMICQALLFEC---SKCT----PCSHVYCKACISRFK---------------DCPLCGADIE 65 (326)
Q Consensus 23 ~l~C~iC~~~l~~~---p~~l----~C~h~fC~~Cl~~~~---------------~CP~Cr~~~~ 65 (326)
++.|+||...+... |... .|+..|=..||..|+ .||.|+..+.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 57899999874422 2211 466666678998884 1999998764
No 169
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=87.57 E-value=9.2 Score=27.99 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=58.8
Q ss_pred HHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhh
Q 020453 176 RAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL 255 (326)
Q Consensus 176 ~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~ 255 (326)
...++...+....+.+... .+... ......-.++.+....++++.|+..|++.+... +...
T Consensus 13 ~~~~~~~~A~~~~~~~~~~----~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~---- 73 (119)
T TIGR02795 13 LKAGDYADAIQAFQAFLKK----YPKST----YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-------PKSP---- 73 (119)
T ss_pred HHcCCHHHHHHHHHHHHHH----CCCcc----ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-------CCCC----
Confidence 3456666666665554422 11111 112344568888889999999999999886532 1111
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 256 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 256 ~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
.....+..++.++..+|++++|+..+++++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 11345677888899999999999888766654
No 170
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=87.32 E-value=5.6 Score=31.09 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=56.9
Q ss_pred HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453 173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 252 (326)
Q Consensus 173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~ 252 (326)
......++...+...++.+.... ....+. ....-.++.+....+++++|+..++.. .. . .
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~---~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~-~-~--- 115 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANA-----PDPELK---PLARLRLARILLQQGQYDEALATLQQI-------PD-E-A--- 115 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC-----CCHHHH---HHHHHHHHHHHHHcCCHHHHHHHHHhc-------cC-c-c---
Confidence 34445677766666655544321 111222 223346888889999999999877441 11 0 0
Q ss_pred hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
-.......+|+++...|++++|...|++++
T Consensus 116 ---~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 ---FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ---hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 112345568999999999999999999874
No 171
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=87.11 E-value=2.3 Score=43.22 Aligned_cols=59 Identities=20% Similarity=0.152 Sum_probs=45.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 264 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
++.+|+. ++..+++.+|+.|+.++..... +--+.+++|+ +++...+|+..+|...|++|
T Consensus 420 laql~e~-~d~~~sL~~~~~A~d~L~~~~~-~ip~E~LNNv--aslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 420 LAQLLEQ-TDPWASLDAYGNALDILESKGK-QIPPEVLNNV--ASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHh-cChHHHHHHHHHHHHHHHHcCC-CCCHHHHHhH--HHHHHHhcChHHHHHHHHHH
Confidence 4556666 6666779999999999987621 2224689999 99999999999998888765
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=87.10 E-value=5.6 Score=30.27 Aligned_cols=61 Identities=23% Similarity=0.234 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
+++......|+.++|+..|+++++. +-... .....+-.++..+..+|++++|+..+++.+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~------~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAA-----GLSGA------DRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CCCch------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555667889999999999999762 11111 1233445688999999999999988876653
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=86.72 E-value=3.1 Score=29.06 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~ 284 (326)
.-.++.+....+++++|+..+.+ ++.... .....-.+|.++..+|++++|++.|+++
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--------------~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK-LKLDPS--------------NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--------------HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--------------CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 34589999999999999998887 222111 1222334589999999999999988864
No 174
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.62 E-value=0.29 Score=43.38 Aligned_cols=51 Identities=33% Similarity=0.764 Sum_probs=39.3
Q ss_pred CCCCCcccCCcccccccccccCCCeecccCCcchHHhHhcCC------CCCCCCcccc
Q 020453 14 YDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIE 65 (326)
Q Consensus 14 ~~~~~~~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~------~CP~Cr~~~~ 65 (326)
.+.+....+...|-||-.-+ +=.-.+||+|..|.-|-.+.. .||.||....
T Consensus 52 sSaddtDEen~~C~ICA~~~-TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 52 SSADDTDEENMNCQICAGST-TYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccccccccceeEEecCCc-eEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 33444555778999999973 546889999999999987652 4999998765
No 175
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=86.32 E-value=7.6 Score=32.92 Aligned_cols=64 Identities=14% Similarity=0.050 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
-..+......+++++|+..|++.++.. +.+. ........+|.++...|++++|+..|++++...
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~-------p~~~----~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESRY-------PFSP----YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCch----hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 455666677899999999888875542 2211 122345678899999999999999988877543
No 176
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=86.26 E-value=0.3 Score=30.88 Aligned_cols=41 Identities=20% Similarity=0.426 Sum_probs=19.4
Q ss_pred CcccccccccccCCCeecccCCcchHHhH--------hcCCCCCCCCcc
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACI--------SRFKDCPLCGAD 63 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl--------~~~~~CP~Cr~~ 63 (326)
.|.||+....+..+-+...|.|.-|-+=. .+.|.||.|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 37899999886665556789997664321 223779999863
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=85.82 E-value=0.46 Score=31.38 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=38.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 264 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+|..+...|++++|+..|++++ ..+|.+......+ +.++...|++.++...|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l------~~~P~~~~a~~~l--g~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQAL------KQDPDNPEAWYLL--GRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHH------CCSTTHHHHHHHH--HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH------HHCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 5677778888777776665433 5668887777777 8888888888888777764
No 178
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=85.71 E-value=4.1 Score=35.16 Aligned_cols=22 Identities=9% Similarity=-0.164 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 020453 260 SLAKVADVDRSIGNEDVAVDGF 281 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~ 281 (326)
.++|++..+...|+++.|..++
T Consensus 170 ~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 170 IANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred hhhhHHHHHHHcCCHHHHHHHH
Confidence 3556665565656655555443
No 179
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=85.23 E-value=0.96 Score=42.30 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCch---hHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 255 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA---GLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 255 ~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
-+.+....|+|.++..+|+|++|+..|++++++ +|+++ ....|+ +..+..+|+..+++..|++|
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL------~Pd~aeA~~A~yNL--Acaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL------NPNPDEAQAAYYNK--ACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCchHHHHHHHHH--HHHHHHcCCHHHHHHHHHHH
Confidence 356778899999999999999999999988765 35544 345666 77777777777776666543
No 180
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.06 E-value=1.2 Score=43.12 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH------hhcCCCCCchhhhHH---------------HHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA------VKRHSNVPSQVLDVA---------------VSLAKVADVDR 269 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~------~~~~~~~~~~~~~la---------------~~l~~l~~~~~ 269 (326)
+..--+|....-+++.+.|+..|++++++-... .+.+. .....+|.| +..--||.+|.
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~-~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHES-IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChh-hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 344556777777889999999999999854310 00000 000111111 11122568888
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 270 SIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 270 ~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
.+++++.|.-.|++|++| +|.+-.++-.+ +..+..++...+++..|++|
T Consensus 501 Kqek~e~Ae~~fqkA~~I------NP~nsvi~~~~--g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEI------NPSNSVILCHI--GRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred ccchhhHHHHHHHhhhcC------CccchhHHhhh--hHHHHHhhhhhHHHHHHHHH
Confidence 888888888888777653 56666666666 77777777777777666654
No 181
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=84.95 E-value=2.5 Score=25.50 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhh
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQR 303 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~ 303 (326)
.+..++.++..+|++++|++.|+++++ .+|++..+...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~------~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA------LDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH------HCcCCHHHHHH
Confidence 345688999999999999988886665 45666554443
No 182
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.91 E-value=0.52 Score=39.61 Aligned_cols=39 Identities=26% Similarity=0.679 Sum_probs=31.7
Q ss_pred cccccccccCCCeecccCC-cchHHhHhcCCCCCCCCcccc
Q 020453 26 CMICQALLFECSKCTPCSH-VYCKACISRFKDCPLCGADIE 65 (326)
Q Consensus 26 C~iC~~~l~~~p~~l~C~h-~fC~~Cl~~~~~CP~Cr~~~~ 65 (326)
|-.|... -..-.++||.| .+|..|-.....||.|+....
T Consensus 161 Cr~C~~~-~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER-EATVLLLPCRHLCLCGICDESLRICPICRSPKT 200 (207)
T ss_pred ceecCcC-CceEEeecccceEecccccccCccCCCCcChhh
Confidence 9999987 34477899999 789999987666999997654
No 183
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.52 E-value=1.7 Score=40.47 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 289 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 289 (326)
...|-++|..++.+|+.++|++.|-+.-.|+.
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH
Confidence 34566788888899999999887766555543
No 184
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.42 E-value=0.36 Score=47.24 Aligned_cols=43 Identities=35% Similarity=0.802 Sum_probs=35.7
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC-------CCCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-------~CP~Cr~~~~ 65 (326)
-.+.|+||....++ |+.+.|.|.||..|+...+ .||.|+....
T Consensus 20 k~lEc~ic~~~~~~-p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKE-PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeec-cchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 57899999998455 9999999999999997653 3999986665
No 185
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.15 E-value=2.1 Score=38.87 Aligned_cols=70 Identities=20% Similarity=0.122 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
.++++...++++++|..+..++.++.+...-.... .-..+.++-.++-.+..+|..-.|.++-+++.++-
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~----~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS----LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh----HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 57888888889999999999998887764322111 01233444555555666666555555555555443
No 186
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=82.93 E-value=0.87 Score=35.98 Aligned_cols=21 Identities=24% Similarity=0.418 Sum_probs=16.0
Q ss_pred CCcccccccccccCCCeecccC
Q 020453 22 GPLSCMICQALLFECSKCTPCS 43 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~ 43 (326)
++.+||||++. .-+-|.|-|.
T Consensus 1 ed~~CpICme~-PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEH-PHNAVLLLCS 21 (162)
T ss_pred CCccCceeccC-CCceEEEEec
Confidence 46799999999 4558888653
No 187
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=82.79 E-value=16 Score=37.46 Aligned_cols=74 Identities=14% Similarity=0.220 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
.+.+|+++.+...+|.+.+|...|.+++.........+.... -.+...-|++.+.+.+++++.|.+.|.+++.-
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~----~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKS----TNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccccc----chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 357899999999999999999999999887544333222100 01334558899999999999999888877654
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=82.56 E-value=1.3 Score=29.86 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=34.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 265 ADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 265 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
..++...+++++|++.++.++. .+|+++.+.... +.++..+|++.+++..|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~------~~p~~~~~~~~~--a~~~~~~g~~~~A~~~l~ 53 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE------LDPDDPELWLQR--ARCLFQLGRYEEALEDLE 53 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH------hCcccchhhHHH--HHHHHHhccHHHHHHHHH
Confidence 4566777887777766665444 366666666656 777777777777766554
No 189
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.32 E-value=2.4 Score=22.18 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
.+.++|.++..+|++++|...+++++.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4567889999999999999999887754
No 190
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=82.05 E-value=8.8 Score=33.63 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 289 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 289 (326)
.++.....+|++++|+..|++.++. .+.+ ...+..+|+++...|+.++|...+.++...++
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~-------~p~d-------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKL-------NPDD-------PLWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHH-------STT--------HHHHHHHHHHHT--------------------
T ss_pred HHHHHhccccccccccccccccccc-------cccc-------cccccccccccccccccccccccccccccccC
Confidence 4566667778888888888876543 3332 34566789999999999999999998887664
No 191
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=81.75 E-value=8.6 Score=38.93 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
...-.+.+...+.+.+..|+.+|..... ...... +...-++|..+..+|.++.|+++|+.++.
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~-------~~~~~~------~~vw~~~a~c~~~l~e~e~A~e~y~kvl~---- 477 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITN-------REGYQN------AFVWYKLARCYMELGEYEEAIEFYEKVLI---- 477 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhc-------Cccccc------hhhhHHHHHHHHHHhhHHHHHHHHHHHHh----
Confidence 3455677777778888888888776532 222211 34556678888888888888888886653
Q ss_pred hhcCCCchhHHhhccchhhhHHHHhHHhcCc
Q 020453 291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLP 321 (326)
Q Consensus 291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (326)
..|++.+.+..+ .+++.-+|++.++++
T Consensus 478 --~~p~~~D~Ri~L--asl~~~~g~~EkalE 504 (895)
T KOG2076|consen 478 --LAPDNLDARITL--ASLYQQLGNHEKALE 504 (895)
T ss_pred --cCCCchhhhhhH--HHHHHhcCCHHHHHH
Confidence 467777777777 888888887777654
No 192
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.34 E-value=0.29 Score=49.15 Aligned_cols=44 Identities=30% Similarity=0.861 Sum_probs=33.0
Q ss_pred CCcccccccccccCC------CeecccCCcchHHhHhcCCC------CCCCCcccc
Q 020453 22 GPLSCMICQALLFEC------SKCTPCSHVYCKACISRFKD------CPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~------p~~l~C~h~fC~~Cl~~~~~------CP~Cr~~~~ 65 (326)
+.-.|+||.-+|.-- -++-.|.|-|=.+|+-.|+. ||.||..++
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 456799998775411 23345999999999999963 999997654
No 193
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.10 E-value=14 Score=30.20 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHh
Q 020453 226 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQ 302 (326)
Q Consensus 226 ~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~~~~~~ 302 (326)
-.++...++.++...++...-++.....+..+...+..+|. ...+..+|.++|+++..-+++. ..+|.+.....
T Consensus 44 g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~---l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k 118 (186)
T PF06552_consen 44 GPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF---LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK 118 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34556666677666666666677765555555555555553 2244567778888888888777 66777654443
No 194
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=80.98 E-value=22 Score=26.91 Aligned_cols=94 Identities=13% Similarity=0.046 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453 170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 249 (326)
Q Consensus 170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~ 249 (326)
.++......+++..+....+.... +.+... .....++.+....+++++|+..|++++++ .+.
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~p~ 83 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAA----YDPYNS-------RYWLGLAACCQMLKEYEEAIDAYALAAAL-------DPD 83 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHH----hCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCC
Confidence 344444556666666655543322 233322 23456777777788888988888887664 222
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 250 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 250 ~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
......++|.++...|++++|+..+++++...
T Consensus 84 -------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 84 -------DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred -------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 23456778999999999999999888776643
No 195
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=80.66 E-value=7.3 Score=26.17 Aligned_cols=35 Identities=31% Similarity=0.317 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
.+..+-+.|...+..|++++|+++|.++++.+-..
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 34556666777788899999999999999999887
No 196
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=80.58 E-value=23 Score=29.93 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=45.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 219 LKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 219 l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
+...+++.+....+++++++..++..+.+..-.. ..+.+..+-.+|++...+|++++|..++.+.+..
T Consensus 127 lyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~-~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 127 LYRDLGDEENEKRFLRKALEFYEEAYENEDFPIE-GMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCC-CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3344455555566666777777666665543222 3344556677899999999999999998866544
No 197
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.56 E-value=0.6 Score=42.18 Aligned_cols=41 Identities=22% Similarity=0.764 Sum_probs=29.1
Q ss_pred cccccccccccCCCe----ecccCCcchHHhHhcCCC-------CCCCCcccc
Q 020453 24 LSCMICQALLFECSK----CTPCSHVYCKACISRFKD-------CPLCGADIE 65 (326)
Q Consensus 24 l~C~iC~~~l~~~p~----~l~C~h~fC~~Cl~~~~~-------CP~Cr~~~~ 65 (326)
..|.||.+. +..-. +=.|||+|=..|+..|+. ||.|+....
T Consensus 5 A~C~Ic~d~-~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDG-RPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccC-CccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 469999666 33211 123999999999999963 999994444
No 198
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=80.53 E-value=11 Score=38.21 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH--HHHHHhhcC--------CCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLN--VRRDAVKRH--------SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 283 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~--~~~~~~~~~--------~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~ 283 (326)
.+.+.+...+|-+++|+..|++.-. +..++.+.. .+...-...+..++-+.+.-++..++.+.|+++|++
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 4555666667777788887776532 222222211 011111224566777788888889999999999998
Q ss_pred HH----HHHHHhhcCCCc-hhHHhhccchhhhHH-------HHhHHhcCccccc
Q 020453 284 AI----KRLESLTLKPEE-AGLEQRCWNSSTTNF-------QKNHLNQLPKFRS 325 (326)
Q Consensus 284 ~~----~~~~~l~~~p~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 325 (326)
+- ++.+-|..+|.. ....++--+-++|.+ .|+|..++.+|..
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 74 334444333332 223333333344444 4455555555544
No 199
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=80.40 E-value=0.83 Score=28.68 Aligned_cols=36 Identities=25% Similarity=0.692 Sum_probs=26.1
Q ss_pred ccccccc--cccCCCeecccC-----CcchHHhHhcCC------CCCCCC
Q 020453 25 SCMICQA--LLFECSKCTPCS-----HVYCKACISRFK------DCPLCG 61 (326)
Q Consensus 25 ~C~iC~~--~l~~~p~~l~C~-----h~fC~~Cl~~~~------~CP~Cr 61 (326)
.|.||++ . ..+|...||. |.+=..|+.+|. .||.|+
T Consensus 1 ~CrIC~~~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC-CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 2 3458889984 445578999885 398884
No 200
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=80.31 E-value=7.7 Score=36.29 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
....+|-+....+++++|+.+|+++..... .+. ......++.++..+|+.++|.++|++++...-.+
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-----~p~--------~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKE-----QLD--------ANDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhc-----CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 344678888888999999999995322211 222 1123478999999999999999999998877555
No 201
>PHA03096 p28-like protein; Provisional
Probab=79.52 E-value=0.65 Score=40.98 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=23.9
Q ss_pred cccccccccccCCC-------eecccCCcchHHhHhcCC
Q 020453 24 LSCMICQALLFECS-------KCTPCSHVYCKACISRFK 55 (326)
Q Consensus 24 l~C~iC~~~l~~~p-------~~l~C~h~fC~~Cl~~~~ 55 (326)
-.|.||++.....| ..-.|-|.||..|+..|.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr 217 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWM 217 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHH
Confidence 57999998644433 222699999999999885
No 202
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=79.51 E-value=2.9 Score=37.98 Aligned_cols=61 Identities=16% Similarity=0.041 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
....++.+....|++++|...|++++++. +.+ ......++.++...|++++|+.++++++.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-------PDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 33456666677777777777777776642 111 12234455556666666666665555544
No 203
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=79.50 E-value=5.9 Score=26.02 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=29.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 020453 222 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 282 (326)
Q Consensus 222 ~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~ 282 (326)
..|++++|+..|++.++. .+.+. ...-.++.++...|++++|.+.++
T Consensus 3 ~~~~~~~A~~~~~~~l~~-------~p~~~-------~~~~~la~~~~~~g~~~~A~~~l~ 49 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-------NPDNP-------EARLLLAQCYLKQGQYDEAEELLE 49 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-------TTTSH-------HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH-------CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356677777777776543 44432 334468899999999777665544
No 204
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=79.31 E-value=11 Score=33.98 Aligned_cols=52 Identities=8% Similarity=0.178 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453 232 YYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 289 (326)
Q Consensus 232 ~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 289 (326)
.|+++++..+.+.+.+++ .+-..+..|...|..+|+.+..+.++..+.+...
T Consensus 229 ~y~~AV~~~e~v~eQn~~------yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 229 DYQKAVEALERVLEQNPE------YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred chHHHHHHHHHHHHhChH------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 333333333344444444 3445567778888899998888888887777653
No 205
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.21 E-value=4.2 Score=22.20 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 261 LAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 261 l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
+-++|.++..+|++++|++.|++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45678888899998888888887654
No 206
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.10 E-value=0.64 Score=43.35 Aligned_cols=26 Identities=35% Similarity=1.164 Sum_probs=23.0
Q ss_pred cccCCcchHHhHhcCCC-----CCCCCcccc
Q 020453 40 TPCSHVYCKACISRFKD-----CPLCGADIE 65 (326)
Q Consensus 40 l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~ 65 (326)
.||-|.|=..|+.+|+. ||.||.+++
T Consensus 604 tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 604 TPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred cchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 49999999999999964 999998865
No 207
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.33 E-value=1.4 Score=44.04 Aligned_cols=46 Identities=22% Similarity=0.475 Sum_probs=36.4
Q ss_pred ccCCcccccccccccCCCeecccCCcchHHhHhcC-CCCCCCCcccc
Q 020453 20 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRF-KDCPLCGADIE 65 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~-~~CP~Cr~~~~ 65 (326)
+++.-+|..|...|--+-|...|||+|=+.|+++. ..||.|+-...
T Consensus 837 i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 837 IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLEDKEDKCPKCLPELR 883 (933)
T ss_pred eeeeeeecccCCccccceeeeecccHHHHHhhccCcccCCccchhhh
Confidence 34556899999987666677999999999999854 35999987433
No 208
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=78.24 E-value=0.65 Score=31.68 Aligned_cols=29 Identities=24% Similarity=0.709 Sum_probs=22.6
Q ss_pred Ceec-ccCCcchHHhHhcCCC-------CCCCCcccc
Q 020453 37 SKCT-PCSHVYCKACISRFKD-------CPLCGADIE 65 (326)
Q Consensus 37 p~~l-~C~h~fC~~Cl~~~~~-------CP~Cr~~~~ 65 (326)
|..+ -|.|.|=..||.+|.. ||.||+.+.
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4433 4899999999999963 999998753
No 209
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=77.81 E-value=9.9 Score=36.25 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG 280 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~ 280 (326)
+...+.-|.-....++|.+|+..|.+++.. .++ -+..++|.+..|..+|.+..|+.-
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-------~P~-------Da~lYsNRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKR-------DPE-------DARLYSNRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhc-------CCc-------hhHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444455556678888888888886443 343 356777777777777777666643
No 210
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.77 E-value=41 Score=28.27 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc---------------------CCCCCchhh----hHHHHHHHHHHH
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR---------------------HSNVPSQVL----DVAVSLAKVADV 267 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~---------------------~~~~~~~~~----~la~~l~~l~~~ 267 (326)
++.=|.-...-|+|++|...|..+|++....... .....+... .-...|..-+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 3344444556789999999999888844221110 000000000 111223345678
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q 020453 268 DRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~ 287 (326)
|+.+..++.|++-|++.+++
T Consensus 178 yek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHh
Confidence 88888888888777766654
No 211
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.73 E-value=1.8 Score=40.20 Aligned_cols=34 Identities=26% Similarity=0.568 Sum_probs=24.3
Q ss_pred CCcccccccccccCCCe---ecccCCcchHHhHhcCC
Q 020453 22 GPLSCMICQALLFECSK---CTPCSHVYCKACISRFK 55 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~---~l~C~h~fC~~Cl~~~~ 55 (326)
...+|.||..-...... +..|+|.||..|+.+++
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~i 181 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHI 181 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHh
Confidence 35689999943233222 45699999999998775
No 212
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=77.07 E-value=0.48 Score=39.84 Aligned_cols=44 Identities=25% Similarity=0.695 Sum_probs=31.4
Q ss_pred CCcccccccccccCCCee--c---ccCCcchHHhHhcCCC-----CC--CCCcccc
Q 020453 22 GPLSCMICQALLFECSKC--T---PCSHVYCKACISRFKD-----CP--LCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~--l---~C~h~fC~~Cl~~~~~-----CP--~Cr~~~~ 65 (326)
.+-.||+|...-+-+|-+ | .|-|.+|.+|+.+.+. || -|.+.+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 456899999743343422 1 4999999999998863 98 5776655
No 213
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=77.07 E-value=26 Score=32.42 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=69.1
Q ss_pred HHHHhCCchhHhhHHHHHHHHHHh---CCC-ChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453 174 CCRAMGDADAAVAYFADSVEFLMK---LPM-DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 249 (326)
Q Consensus 174 ~~~~~h~~H~~~~~~e~~~~~~~~---L~~-~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~ 249 (326)
.....++...+..-++.+...... ... ..............||...+..+.+|.+|+....+.|++ .+.
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-------~~~ 289 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-------DPN 289 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-------CCC
Confidence 334556665555555544433221 111 122233344456677888888888888888877776654 344
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHH
Q 020453 250 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQK 314 (326)
Q Consensus 250 ~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 314 (326)
++ ..|-.-|.++..+|+++.|...|+++++ ..|++..+..-+ ..+..-.+
T Consensus 290 N~-------KALyRrG~A~l~~~e~~~A~~df~ka~k------~~P~Nka~~~el--~~l~~k~~ 339 (397)
T KOG0543|consen 290 NV-------KALYRRGQALLALGEYDLARDDFQKALK------LEPSNKAARAEL--IKLKQKIR 339 (397)
T ss_pred ch-------hHHHHHHHHHHhhccHHHHHHHHHHHHH------hCCCcHHHHHHH--HHHHHHHH
Confidence 43 3344557788888888888877776654 456665555544 44444443
No 214
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.14 E-value=7.9 Score=36.65 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453 207 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284 (326)
Q Consensus 207 ~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~ 284 (326)
...+...++.|+-....++|++|+.+|.++++..- .. ..-++|++..|+.+|+.++.++.=.++
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p-------~e-------piFYsNraAcY~~lgd~~~Vied~TkA 175 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCP-------DE-------PIFYSNRAACYESLGDWEKVIEDCTKA 175 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCC-------CC-------chhhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 34455667778888888999999999999987532 11 223455555666666555544443333
No 215
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=75.65 E-value=14 Score=34.36 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
--++.+....+++.+|+.+|++++++ .+. ....-.++.+++.+|+.++|.++|++++...
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~-------~P~--------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQ-------RPD--------AYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc-------CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 34577777788999999999988765 222 1223468999999999999999999988754
No 216
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=75.18 E-value=11 Score=38.99 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
++..++..+..+++.+++.+.|++.++.- +. -+..++++|..+... +.++|++++.+|+.++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~-------n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-------RD-------NPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cc-------cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 55677888888899999999999987764 32 357899999888888 9999999999988775
No 217
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=74.74 E-value=39 Score=27.59 Aligned_cols=76 Identities=18% Similarity=0.136 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020453 204 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 283 (326)
Q Consensus 204 ~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~ 283 (326)
..+..|......+++.....|+++.|+..|.++.+-- .... ..+...=++..+....+++..+..+..+
T Consensus 30 ~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~--------~~~~---~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 30 LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC--------TSPG---HKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc--------CCHH---HHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3466778888899999999999999999999864421 1111 1122222334455555777777777777
Q ss_pred HHHHHHH
Q 020453 284 AIKRLES 290 (326)
Q Consensus 284 ~~~~~~~ 290 (326)
+..+++.
T Consensus 99 a~~~~~~ 105 (177)
T PF10602_consen 99 AESLIEK 105 (177)
T ss_pred HHHHHhc
Confidence 7777654
No 218
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=74.15 E-value=24 Score=30.52 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=33.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
.++.....|++..|+..|.++.... +.+ ....+.+|.++..+|+.+.|...|.++++.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~-------p~d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L 163 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLA-------PTD-------WEAWNLLGAALDQLGRFDEARRAYRQALEL 163 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccC-------CCC-------hhhhhHHHHHHHHccChhHHHHHHHHHHHh
Confidence 5555556666777776666654331 111 234555666666666666666666665554
No 219
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=74.11 E-value=11 Score=26.10 Aligned_cols=40 Identities=25% Similarity=0.123 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCc
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEE 297 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~ 297 (326)
+..+-..|......|++++|+.+|.++++.+..+ ...|+.
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~ 46 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 4445556677778899999999999999999887 445543
No 220
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=74.07 E-value=1.6 Score=32.17 Aligned_cols=33 Identities=30% Similarity=0.583 Sum_probs=25.5
Q ss_pred cCCcccccccccccCC-CeecccCCcchHHhHhc
Q 020453 21 IGPLSCMICQALLFEC-SKCTPCSHVYCKACISR 53 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~-p~~l~C~h~fC~~Cl~~ 53 (326)
.+.-.|++|...|... -...||||.|-..|+.+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 3566799999987654 44579999999988753
No 221
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=73.71 E-value=12 Score=36.42 Aligned_cols=57 Identities=12% Similarity=0.186 Sum_probs=44.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
++.+....+++++|...|++++++. + . +..+..+|.+++..|+.++|++.|++|..+
T Consensus 426 la~~~~~~g~~~~A~~~l~rAl~L~-------p-------s-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 426 LAVQALVKGKTDEAYQAINKAIDLE-------M-------S-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-------C-------C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4445555689999999999988775 1 1 346777899999999999999999988643
No 222
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=73.28 E-value=18 Score=27.87 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCc-hhHHhhccchhhhHHHHhHH
Q 020453 256 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRCWNSSTTNFQKNHL 317 (326)
Q Consensus 256 ~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~-~~~~~~~~~~~~~~~~~~~~ 317 (326)
+-+...-..+......+++.++.+...++.+|+.+| ..+.+. ..+..++ ..+|.|+.+++
T Consensus 29 eg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL--~~LY~y~~~rL 91 (132)
T COG1516 29 EGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNL--DALYDYMVRRL 91 (132)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHH--HHHHHHHHHHH
Confidence 333333344555556688888888999999999888 334443 4467777 77777777554
No 223
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=73.22 E-value=28 Score=32.57 Aligned_cols=103 Identities=8% Similarity=0.007 Sum_probs=54.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH-----------HHHhhcCCCCCchhhhH-----------H--HHHHHHHHHHHhc
Q 020453 216 IGDLKYYGGDLQAARSYYVRSLNVR-----------RDAVKRHSNVPSQVLDV-----------A--VSLAKVADVDRSI 271 (326)
Q Consensus 216 l~~l~~~~~~~~~a~~~~~~sl~~~-----------~~~~~~~~~~~~~~~~l-----------a--~~l~~l~~~~~~~ 271 (326)
++.+....|++++|...+++.++.. .....-.+.+....... . ..+..+|-++...
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH 348 (409)
T ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc
Confidence 4455566788888888888777632 11111122222111111 1 3344567788888
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 272 GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 272 ~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
|++.+|.++++.+...- .+|+..... .+ +.++.-+|+..++..+|++
T Consensus 349 ~~~~~A~~~le~a~a~~----~~p~~~~~~-~L--a~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 349 GEFIEAADAFKNVAACK----EQLDANDLA-MA--ADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred ccHHHHHHHHHHhHHhh----cCCCHHHHH-HH--HHHHHHcCCHHHHHHHHHH
Confidence 88888888887433222 234443322 34 5555555555555444443
No 224
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=73.15 E-value=19 Score=36.88 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhc
Q 020453 261 LAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRC 304 (326)
Q Consensus 261 l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~ 304 (326)
+..++.++...|++++|+..++++++ ..|++..+...+
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~------~~P~~~~~~~~l 156 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALP------RAPQTQQYPTEY 156 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH------hCCCCHHHHHHH
Confidence 44567777777887777777666554 356665555444
No 225
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=72.87 E-value=21 Score=31.51 Aligned_cols=67 Identities=18% Similarity=0.126 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH------------------------------HHHhhcCCCCCchhhhHHHHHHH
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVR------------------------------RDAVKRHSNVPSQVLDVAVSLAK 263 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~------------------------------~~~~~~~~~~~~~~~~la~~l~~ 263 (326)
--|+.++...+++..|...|.+++++. ++....++. .+.++.-
T Consensus 160 ~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-------~iral~l 232 (287)
T COG4235 160 DLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-------NIRALSL 232 (287)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-------cHHHHHH
Confidence 457888999999999999999998843 122222322 2456677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 264 VADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
|+..+...|+|.+|+..++..++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 888899999988888887755543
No 226
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=71.68 E-value=1.9 Score=37.99 Aligned_cols=42 Identities=24% Similarity=0.482 Sum_probs=30.8
Q ss_pred CCccccccccccc--CCCeecccCCcchHHhHhcCC-------CCCCCCcc
Q 020453 22 GPLSCMICQALLF--ECSKCTPCSHVYCKACISRFK-------DCPLCGAD 63 (326)
Q Consensus 22 ~~l~C~iC~~~l~--~~p~~l~C~h~fC~~Cl~~~~-------~CP~Cr~~ 63 (326)
..|+||+=.+.-. ++|+++.|||..-+.-+.... .||.|...
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 4689998554311 359999999999888776653 49999754
No 227
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=71.64 E-value=55 Score=31.06 Aligned_cols=68 Identities=16% Similarity=0.097 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
.+...|+++...++++++|..+|++-++......... + +.....-+|+.-+...+++++|..+-..++
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~-~------~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID-D------ETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc-h------HHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 4567899999999999999999999998763222222 2 245566678888888899988887655443
No 228
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=71.55 E-value=58 Score=30.30 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=51.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHH
Q 020453 198 LPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVA 277 (326)
Q Consensus 198 L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a 277 (326)
|-....+++..-...+..+.++-.....++-|+.....++...+.+.- ++..+..|..... .++|.++
T Consensus 69 L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~M-----------Lv~a~~qL~~~~~-~r~Y~e~ 136 (383)
T PF04100_consen 69 LFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQM-----------LVTAVEQLKELAK-KRQYKEI 136 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH-cCCHHHH
Confidence 333344455555566666666666666777777777666665554221 2333333333333 3666677
Q ss_pred HHHHHHHHHHHHHh---hcCCCchhHHhhc
Q 020453 278 VDGFQEAIKRLESL---TLKPEEAGLEQRC 304 (326)
Q Consensus 278 ~~~~~~~~~~~~~l---~~~p~~~~~~~~~ 304 (326)
...++-+.+++... ..-|..+.+...+
T Consensus 137 a~~L~av~~L~~~F~~yksi~~I~~L~~~i 166 (383)
T PF04100_consen 137 ASLLQAVKELLEHFKPYKSIPQIAELSKRI 166 (383)
T ss_pred HHHHHHHHHHHHHHHcccCcHHHHHHHHHH
Confidence 76666666666554 2223334444444
No 229
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=71.54 E-value=18 Score=24.64 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCC
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKP 295 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p 295 (326)
+..+-..|......|++++|+.+|.++++.+... ...|
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~ 44 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEK 44 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 4444555666777799999999999999999887 4443
No 230
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.34 E-value=60 Score=31.05 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 235 RSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 235 ~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
+++++.++..+-++.. +. .+..+|.+...+|+.++|+++|+++...-+..
T Consensus 521 ~a~~Ll~KA~e~Dpkc-----e~--A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 521 QAENLLRKAIELDPKC-----EQ--AYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHHccCchH-----HH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 4444444444444431 22 35567888999999999999999998776543
No 231
>PRK14574 hmsH outer membrane protein; Provisional
Probab=70.20 E-value=22 Score=36.60 Aligned_cols=17 Identities=12% Similarity=0.175 Sum_probs=8.9
Q ss_pred HHHHHHhcCCHHHHHHH
Q 020453 264 VADVDRSIGNEDVAVDG 280 (326)
Q Consensus 264 l~~~~~~~~~~~~a~~~ 280 (326)
++.++...++.++|++.
T Consensus 142 La~~y~~~~q~~eAl~~ 158 (822)
T PRK14574 142 MIMTQADAGRGGVVLKQ 158 (822)
T ss_pred HHHHHhhcCCHHHHHHH
Confidence 35555555555555444
No 232
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=70.10 E-value=32 Score=23.49 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE 296 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~ 296 (326)
+..+-..|...+..|++++|+.+|.++++.+... ...|+
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3344445666667899999999999999999886 44443
No 233
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.93 E-value=21 Score=31.21 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVR 240 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~ 240 (326)
....++.+..+.|+.+.|..+|+..-+..
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~ 242 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVT 242 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 44678999999999999999999765433
No 234
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=69.92 E-value=50 Score=29.74 Aligned_cols=64 Identities=9% Similarity=0.038 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
....++.+....+++++|+..|.+.+..... ... ......-.++.++..+|++++|+..|++++
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSM------LRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----Ccc------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 4457888999999999999999988765331 111 011223457888999999999999998874
No 235
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=69.87 E-value=2.7 Score=22.50 Aligned_cols=8 Identities=38% Similarity=0.750 Sum_probs=4.9
Q ss_pred cccccccc
Q 020453 25 SCMICQAL 32 (326)
Q Consensus 25 ~C~iC~~~ 32 (326)
+||-|...
T Consensus 2 ~CP~C~~~ 9 (26)
T PF10571_consen 2 TCPECGAE 9 (26)
T ss_pred cCCCCcCC
Confidence 46666665
No 236
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=69.82 E-value=36 Score=34.80 Aligned_cols=66 Identities=11% Similarity=-0.046 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHH------HhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRD------AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~------~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
.+..+....+++++|+..+++..+..-. .....+++ +....+..++.++...|++++|++.+++++
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~-----~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND-----DWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444456678888888888776543210 00011110 112233445666666677666666555443
No 237
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.35 E-value=16 Score=25.29 Aligned_cols=35 Identities=29% Similarity=0.157 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
.+..+...|.-....|+|++|+.+|+++++.+-..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 45666677777888899999999999999999774
No 238
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=68.29 E-value=28 Score=27.82 Aligned_cols=18 Identities=17% Similarity=0.087 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 020453 275 DVAVDGFQEAIKRLESLT 292 (326)
Q Consensus 275 ~~a~~~~~~~~~~~~~l~ 292 (326)
..-+.+|.+...+.++|+
T Consensus 69 ~~~L~yF~~Ld~itr~Ln 86 (157)
T PF04136_consen 69 SEKLQYFEELDPITRRLN 86 (157)
T ss_pred HHHhHHHhhHHHHHHHHc
Confidence 345778888777777773
No 239
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=67.98 E-value=2.4 Score=38.62 Aligned_cols=22 Identities=27% Similarity=0.913 Sum_probs=17.1
Q ss_pred CcchHHhHhcCCC-----------------CCCCCcccc
Q 020453 44 HVYCKACISRFKD-----------------CPLCGADIE 65 (326)
Q Consensus 44 h~fC~~Cl~~~~~-----------------CP~Cr~~~~ 65 (326)
..-|..|+.+|+. ||+||+.|-
T Consensus 313 PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 3448899998862 999998864
No 240
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=67.76 E-value=32 Score=28.09 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 256 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 256 ~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
++...+..+|..|...|+++.|++.|.++.+-
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~ 65 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDY 65 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 56778888999999999999999999876554
No 241
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=67.32 E-value=10 Score=21.50 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 020453 258 AVSLAKVADVDRSIGNEDVAV 278 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~ 278 (326)
...+.++|.++...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 567889999999999998886
No 242
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=67.16 E-value=26 Score=24.02 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCC
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKP 295 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p 295 (326)
+..+-.-|.-....|++++|+.+|.++++.+-.. ...|
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~ 44 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEK 44 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4444555666777799999999999999999886 4444
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=67.12 E-value=17 Score=21.70 Aligned_cols=27 Identities=15% Similarity=0.071 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNV 239 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~ 239 (326)
...++......|++++|+..|++.++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 346788888999999999999988664
No 244
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=66.69 E-value=4.6 Score=26.60 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 271 IGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 271 ~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
.|++++|++.|++++ ..+|.+..+...+ +..+...|+..++...++
T Consensus 4 ~~~~~~A~~~~~~~l------~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~l~ 49 (68)
T PF14559_consen 4 QGDYDEAIELLEKAL------QRNPDNPEARLLL--AQCYLKQGQYDEAEELLE 49 (68)
T ss_dssp TTHHHHHHHHHHHHH------HHTTTSHHHHHHH--HHHHHHTT-HHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH------HHCCCCHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence 356556665555443 4467776766667 777777777776655544
No 245
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.13 E-value=21 Score=30.72 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=18.4
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHh
Q 020453 269 RSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
....+|..-++.|.+++.|++++
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33356777889999999999998
No 246
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=65.86 E-value=1.8 Score=45.31 Aligned_cols=46 Identities=26% Similarity=0.616 Sum_probs=38.5
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC----CCCCCCcccccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKI 67 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~~~ 67 (326)
+...|++|++++...-...-|||.+|..|...|. .||.|.....++
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~df 1201 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIKGDF 1201 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhhhhh
Confidence 6779999999976567788899999999999885 499998766643
No 247
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=64.96 E-value=71 Score=33.87 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=11.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHH
Q 020453 267 VDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
+++..|+...|..+.++|....
T Consensus 1534 L~~T~~di~ra~~L~s~A~~a~ 1555 (1758)
T KOG0994|consen 1534 LSRTKGDIARAENLQSEAERAR 1555 (1758)
T ss_pred HHhhhhhHHHHHHHHHHHHHHH
Confidence 3444455555555555444433
No 248
>PRK05685 fliS flagellar protein FliS; Validated
Probab=64.84 E-value=51 Score=25.46 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCc-hhHHhhccchhhhHHHHhHHh
Q 020453 265 ADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRCWNSSTTNFQKNHLN 318 (326)
Q Consensus 265 ~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~-~~~~~~~~~~~~~~~~~~~~~ 318 (326)
+......|+++++.....++..|+..| ..+++. ..+-.++ .++|.|+...+.
T Consensus 42 A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L--~~LY~y~~~~L~ 96 (132)
T PRK05685 42 AKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNL--SALYDYMIRRLL 96 (132)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHH--HHHHHHHHHHHH
Confidence 444555699999999999999999998 445543 4677888 888888875543
No 249
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=64.82 E-value=46 Score=25.22 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=38.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCc-hhHHhhccchhhhHHHHhHH
Q 020453 265 ADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRCWNSSTTNFQKNHL 317 (326)
Q Consensus 265 ~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~-~~~~~~~~~~~~~~~~~~~~ 317 (326)
+......|+++.+.....++..|+..| ..+++. ..+-.++ ..+|.|+...+
T Consensus 36 a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L--~~lY~y~~~~L 89 (122)
T PF02561_consen 36 AKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNL--FRLYDYMIRQL 89 (122)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHH--HHHHHHHHHHH
Confidence 444556688889999999999999998 556653 4577778 88888887554
No 250
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.16 E-value=4.7 Score=33.77 Aligned_cols=42 Identities=24% Similarity=0.627 Sum_probs=33.0
Q ss_pred cccccccccccC-CCeecccCCcchHHhHhcCC------------CCCCCCcccc
Q 020453 24 LSCMICQALLFE-CSKCTPCSHVYCKACISRFK------------DCPLCGADIE 65 (326)
Q Consensus 24 l~C~iC~~~l~~-~p~~l~C~h~fC~~Cl~~~~------------~CP~Cr~~~~ 65 (326)
-.|.+|...|-. +-+.|-|-|-|=..|+.+|- +||.|...+-
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 368999887544 46778999999999998873 3999987643
No 251
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=63.77 E-value=81 Score=27.99 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=16.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHh
Q 020453 270 SIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 270 ~~~~~~~a~~~~~~~~~~~~~l 291 (326)
..|+|..|++...+...+++.+
T Consensus 139 ~~~dy~~Al~li~~~~~~l~~l 160 (291)
T PF10475_consen 139 EEGDYPGALDLIEECQQLLEEL 160 (291)
T ss_pred hcCCHHHHHHHHHHHHHHHHhc
Confidence 3488888888888777777664
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=63.22 E-value=88 Score=27.47 Aligned_cols=63 Identities=24% Similarity=0.194 Sum_probs=47.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q 020453 222 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 222 ~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~ 290 (326)
..|+++.|..+|.++-.+.. .........++..+-++|.-....+ +++.|..+++++.++++.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~------~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~ 68 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLN------SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEK 68 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHh------cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 35788888888888755433 2233334467888888997666667 999999999999999976
No 253
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=62.68 E-value=28 Score=24.29 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 256 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 256 ~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
+.|...-+.|.-.+..|+.+.|+.+|++++.++.+=
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 344444445655556699999999999999998775
No 254
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=62.62 E-value=68 Score=24.55 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=58.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchh-H
Q 020453 223 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAG-L 300 (326)
Q Consensus 223 ~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~~~-~ 300 (326)
.+.|++|-..+.+++++.+.+-..+ ...-.-| .+-....|+..+-.+|+|++++.--..++.-+.+- ..+.+... +
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eE-aFDh~GF-DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEE-AFDHDGF-DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS----HHHH-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHh-hcccccH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 4678899998999888766432222 1111122 24456678899999999999998888888888776 44544421 1
Q ss_pred Hhh-ccchhhhHHHHhHHhcCcccc
Q 020453 301 EQR-CWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 301 ~~~-~~~~~~~~~~~~~~~~~~~~~ 324 (326)
+.- +.......-+|+...+++.|+
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr 124 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFR 124 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHH
Confidence 111 111344455566666666665
No 255
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=61.06 E-value=3.6 Score=28.44 Aligned_cols=25 Identities=36% Similarity=0.796 Sum_probs=21.5
Q ss_pred ccCCcchHHhHhcCCC----CCCCCcccc
Q 020453 41 PCSHVYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 41 ~C~h~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
-|-|.|=..||.+|.. ||.+|+.+.
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 3999999999999974 999998754
No 256
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.74 E-value=97 Score=26.18 Aligned_cols=91 Identities=20% Similarity=0.085 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hc-CCCc---
Q 020453 224 GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TL-KPEE--- 297 (326)
Q Consensus 224 ~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~-~p~~--- 297 (326)
..++.|+..|.-++-..+.. +.... .+|...-++|=++..+|+.+....++++|+..+++. .. .|..
T Consensus 91 Rt~~~ai~~YkLAll~~~~~-~~~~s------~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIK-KEKPS------KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHh-CCCHH------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 46778888777766543321 21111 355555667888888999888889999999998887 22 2221
Q ss_pred -hhHHhhccchhhhHHHHhHHhcCccc
Q 020453 298 -AGLEQRCWNSSTTNFQKNHLNQLPKF 323 (326)
Q Consensus 298 -~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (326)
+.++.-+ +.+..-+|++.+|...|
T Consensus 164 ~~~l~YLi--geL~rrlg~~~eA~~~f 188 (214)
T PF09986_consen 164 EATLLYLI--GELNRRLGNYDEAKRWF 188 (214)
T ss_pred HHHHHHHH--HHHHHHhCCHHHHHHHH
Confidence 3344444 66667777777766555
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.61 E-value=1.2e+02 Score=26.54 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=52.3
Q ss_pred HhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhh
Q 020453 177 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 256 (326)
Q Consensus 177 ~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~ 256 (326)
...+..+++.+++.+.....+-+.-.. -+.++.+-+.+. ...+.+.|++.|++.+++.++- ++ ....++
T Consensus 83 e~~klsEvvdl~eKAs~lY~E~Gspdt-----AAmaleKAak~l-env~Pd~AlqlYqralavve~~-dr----~~ma~e 151 (308)
T KOG1585|consen 83 ELSKLSEVVDLYEKASELYVECGSPDT-----AAMALEKAAKAL-ENVKPDDALQLYQRALAVVEED-DR----DQMAFE 151 (308)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCcch-----HHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHhcc-ch----HHHHHH
Confidence 334445666666666555554443211 112222322222 1235788899999988876531 11 111222
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
.+..++.++..+..+.+|...+.+-..+....
T Consensus 152 ---l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~ 183 (308)
T KOG1585|consen 152 ---LYGKCSRVLVRLEKFTEAATAFLKEGVAADKC 183 (308)
T ss_pred ---HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH
Confidence 34555667777777766666555555554444
No 258
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=60.52 E-value=1.7e+02 Score=28.61 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh---hcCCCchhHH-hhccchhhhHHHHhHHh
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL---TLKPEEAGLE-QRCWNSSTTNFQKNHLN 318 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l---~~~p~~~~~~-~~~~~~~~~~~~~~~~~ 318 (326)
..+-..++.++..+..|++-+..++++..--+-+ ..+| .+. ..- .++|+|..+...
T Consensus 395 RFTRvEMaRVLMeRNqYKErLMELqEavrWTEMiRAsre~p---~vqeKK~--s~IWqFFSrLfs 454 (832)
T KOG2077|consen 395 RFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRASRENP---AVQEKKR--SSIWQFFSRLFS 454 (832)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhcCc---hhhhhcc--ccHHHHHHHHhc
Confidence 3444567788888899999998899887766555 2344 222 223 778888776543
No 259
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=60.26 E-value=6.1 Score=39.31 Aligned_cols=61 Identities=15% Similarity=0.358 Sum_probs=43.2
Q ss_pred CCcccccccccccCCCeecccCCcchHHhH--------hcCCCCCCCCcccc--cccccHHHHHHHHHHHh
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACI--------SRFKDCPLCGADIE--KIEADTTLQDVVDRFIE 82 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl--------~~~~~CP~Cr~~~~--~~~~n~~l~~~~~~~~~ 82 (326)
-.|.||++.-.+..+.+...|.|--|.+=. ...|.||+|.+... .+..+..+.+++.....
T Consensus 305 vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 305 VSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQA 375 (636)
T ss_pred eEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhccC
Confidence 468999988776666777778885554433 12267999998776 57778888888776544
No 260
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.00 E-value=18 Score=22.07 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 020453 263 KVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 263 ~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
+++.+|..+|+++.|.+.+++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 47889999999888888777665
No 261
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=59.71 E-value=78 Score=24.34 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 208 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 208 ~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
........+.......+++++|+....+.+.+ ++-+ -.....+..++...|++..|+..|++....
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~-------dP~~-------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALAL-------DPYD-------EEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-------STT--------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-------CCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 33445556666777777888777766665443 3332 123455678889999999999999999998
Q ss_pred HHH-hhcCCCc
Q 020453 288 LES-LTLKPEE 297 (326)
Q Consensus 288 ~~~-l~~~p~~ 297 (326)
+.+ +...|+.
T Consensus 126 l~~elg~~Ps~ 136 (146)
T PF03704_consen 126 LREELGIEPSP 136 (146)
T ss_dssp HHHHHS----H
T ss_pred HHHHhCcCcCH
Confidence 875 4555553
No 262
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=59.69 E-value=29 Score=32.00 Aligned_cols=61 Identities=23% Similarity=0.216 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
...+|.+....+.+.+|..+|+.+++...+ +...+.+|.++..+|+...|.+.+++++...
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s---------------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPS---------------ASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCC---------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 345677777778889999998877554322 5567889999999999999999999999443
No 263
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=59.24 E-value=22 Score=33.12 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
..+.||++......+++|.++|..|+.+
T Consensus 473 LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 473 LHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4466889999999999999999877655
No 264
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=59.17 E-value=17 Score=18.95 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQ 282 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~ 282 (326)
....++.++..+|+.++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34568899999999999988765
No 265
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.15 E-value=4 Score=34.74 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=27.8
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK 55 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~ 55 (326)
++--|++|+.. +.+|++.|=||.||+.||.+++
T Consensus 42 ~FdcCsLtLqP-c~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 42 PFDCCSLTLQP-CRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred Ccceeeeeccc-ccCCccCCCCeeeeHHHHHHHH
Confidence 34458999999 6779999999999999997663
No 266
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=58.27 E-value=15 Score=38.81 Aligned_cols=111 Identities=13% Similarity=0.022 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453 205 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284 (326)
Q Consensus 205 ~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~ 284 (326)
++..+......++.+...++++++|+.+-.++.-+.+.....+.. +-+..+.+++......++...|+..+..+
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~------~t~~~y~nlal~~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP------NTKLAYGNLALYEFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH------HHHHHhhHHHHHHHhccCccchhhhHHHH
Confidence 445566677788888888999999998877777777766666554 33455666666666666777777777777
Q ss_pred HHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453 285 IKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF 323 (326)
Q Consensus 285 ~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (326)
+.+.--. ..+|+.+.+-.++ ..+..-++++..++.+.
T Consensus 1042 ~~l~~Ls~ge~hP~~a~~~~nl--e~l~~~v~e~d~al~~l 1080 (1236)
T KOG1839|consen 1042 LKLKLLSSGEDHPPTALSFINL--ELLLLGVEEADTALRYL 1080 (1236)
T ss_pred HHhhccccCCCCCchhhhhhHH--HHHHhhHHHHHHHHHHH
Confidence 7766443 4467776665555 44444455555554443
No 267
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=56.72 E-value=1e+02 Score=28.20 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH----------------HHHhhcCCCCCchhhhHHHHHHHHH-HHHHhcCCHHH
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVR----------------RDAVKRHSNVPSQVLDVAVSLAKVA-DVDRSIGNEDV 276 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~----------------~~~~~~~~~~~~~~~~la~~l~~l~-~~~~~~~~~~~ 276 (326)
++-|.-+..+|.|++|+..|.+++... .+.+.. ...-..+|..|+.+- .+|..++....
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~----AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQ----AEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHH----HHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445666778899999999999887622 111111 111123455555442 55666555555
Q ss_pred HHHHHHHHHHHHHHh-hcCCCchhHH
Q 020453 277 AVDGFQEAIKRLESL-TLKPEEAGLE 301 (326)
Q Consensus 277 a~~~~~~~~~~~~~l-~~~p~~~~~~ 301 (326)
++....+|.+-.+.+ ...|.+..+.
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHHHH
Confidence 555555555555555 4455544433
No 268
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.10 E-value=67 Score=22.44 Aligned_cols=60 Identities=17% Similarity=0.106 Sum_probs=43.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 221 YYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 221 ~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
+...+.++|+..+.++++...+.. +.-..|..+..++...|+|++.+.+--.-+++-+++
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~-----------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDRE-----------DRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 355566777777777665433211 233567788899999999999999988888888776
No 269
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=56.01 E-value=2.3e+02 Score=28.55 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=31.3
Q ss_pred CchhhhHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 251 PSQVLDVAVSLAKVA-DVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 251 ~~~~~~la~~l~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
..+....+..+-+++ .-....|+.+.|+..++.+..++.++
T Consensus 416 ~dW~laEae~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La~~ 457 (656)
T PRK06975 416 DDWMIAEVEQMLSSASQQLQLTGNVQLALIALQNADARLATS 457 (656)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 456666677777776 33444499999999999999999886
No 270
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.74 E-value=73 Score=22.72 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHH
Q 020453 208 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVD 268 (326)
Q Consensus 208 ~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~ 268 (326)
....+.-+++.+....|.+++|+..+++++++.++..+.. .++..+.++..+.
T Consensus 39 ~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~--------~l~~al~~~~~l~ 91 (94)
T PF12862_consen 39 GLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRR--------CLAYALSWLANLL 91 (94)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHHHh
Confidence 3445566788899999999999999999999988755532 3555666665443
No 271
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.68 E-value=30 Score=23.88 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 261 LAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 261 l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
|-.-|......|++++|+++|.++++.+-.
T Consensus 9 Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 9 LVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 334455556669999999999999998866
No 272
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=55.44 E-value=0.43 Score=28.02 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=9.9
Q ss_pred HHHHHHH-HHHHHH
Q 020453 160 LCSQLGA-VLGMLG 172 (326)
Q Consensus 160 ~C~~H~~-~l~~~C 172 (326)
.|+.|++ ++.+||
T Consensus 2 ~C~~H~~~~~~~fC 15 (39)
T cd00021 2 LCDEHGEEPLSLFC 15 (39)
T ss_pred CCCccCCcceEEEe
Confidence 4778866 888888
No 273
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.37 E-value=45 Score=28.96 Aligned_cols=40 Identities=28% Similarity=0.283 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchh
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAG 299 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~ 299 (326)
.|..-|+-...+|+|++|...|.+|+.++++| ...|-...
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e 221 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE 221 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH
Confidence 44455777778899999999999999999999 44554433
No 274
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=55.29 E-value=7.9 Score=28.69 Aligned_cols=23 Identities=22% Similarity=0.651 Sum_probs=17.1
Q ss_pred CCcchHHhHhcC-------------CCCCCCCcccc
Q 020453 43 SHVYCKACISRF-------------KDCPLCGADIE 65 (326)
Q Consensus 43 ~h~fC~~Cl~~~-------------~~CP~Cr~~~~ 65 (326)
.-.||..||... |.||.||..-.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 667999998554 45999887544
No 275
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=54.88 E-value=1.7e+02 Score=30.54 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 169 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 239 (326)
Q Consensus 169 ~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~ 239 (326)
..+..|+..+++..++..+++.+++.- +.+. .+.|+++...... ++++|+.++.++++.
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D----~~n~-------~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKAD----RDNP-------EIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC----cccH-------HHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 334466656666666666666555432 3333 3567777777666 888999999998874
No 276
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=54.06 E-value=0.42 Score=28.73 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=18.5
Q ss_pred HHHHHHHHH-HHHHH---------HHHHHhCCchhHhh
Q 020453 159 ELCSQLGAV-LGMLG---------DCCRAMGDADAAVA 186 (326)
Q Consensus 159 ~~C~~H~~~-l~~~C---------~~~~~~h~~H~~~~ 186 (326)
..|..|.+. +.+|| .|....|+.|++++
T Consensus 4 ~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~H~~~~ 41 (42)
T PF00643_consen 4 PKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKGHKIVP 41 (42)
T ss_dssp SB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTTSEEEE
T ss_pred ccCccCCccceEEEecCCCCccCccCCCCCCCCCEEeE
Confidence 368888765 88888 44445588887654
No 277
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=53.60 E-value=4.3 Score=31.30 Aligned_cols=32 Identities=19% Similarity=0.506 Sum_probs=23.8
Q ss_pred CcccccccccccC--CCeecccC------CcchHHhHhcC
Q 020453 23 PLSCMICQALLFE--CSKCTPCS------HVYCKACISRF 54 (326)
Q Consensus 23 ~l~C~iC~~~l~~--~p~~l~C~------h~fC~~Cl~~~ 54 (326)
...|.||++.+-. --+.++|| |-||..|+.+|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 6789999997544 23445555 67899999998
No 278
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=53.32 E-value=88 Score=29.25 Aligned_cols=25 Identities=20% Similarity=0.053 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEA 284 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~ 284 (326)
.|...+..+...++++.|++..+++
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444455555555555555444433
No 279
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=53.20 E-value=7.4 Score=34.12 Aligned_cols=41 Identities=27% Similarity=0.754 Sum_probs=31.2
Q ss_pred CCcccccccccccC---CCeecccCCcchHHhHhcC----CCCCCCCc
Q 020453 22 GPLSCMICQALLFE---CSKCTPCSHVYCKACISRF----KDCPLCGA 62 (326)
Q Consensus 22 ~~l~C~iC~~~l~~---~p~~l~C~h~fC~~Cl~~~----~~CP~Cr~ 62 (326)
.+..||+|.+.++. .|..++|||..=..|++.. ..||.|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 35669999986554 4888999998766777655 45999998
No 280
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=53.12 E-value=58 Score=22.35 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
..+-.-|......|++++|+.+|.++++.+-..
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSALQYFVPA 39 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 334444566667799999999999999999876
No 281
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.79 E-value=72 Score=27.89 Aligned_cols=67 Identities=24% Similarity=0.310 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
.+.=.||+..+.+|+|+.|...|...++. ....+.- -..|=+||.....+|+.++|...|++.++.+
T Consensus 179 nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~----~P~s~KA-------pdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 179 NAYYWLGESLYAQGDYEDAAYIFARVVKD----YPKSPKA-------PDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred hhHHHHHHHHHhcccchHHHHHHHHHHHh----CCCCCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 34557899999999999999999887652 2222221 2455667888888888888887777665543
No 282
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=52.44 E-value=7 Score=34.89 Aligned_cols=44 Identities=20% Similarity=0.532 Sum_probs=30.7
Q ss_pred CCccccccccccc-C--CCeecccCCcchHHhHhcCC-----CCCCCCcccc
Q 020453 22 GPLSCMICQALLF-E--CSKCTPCSHVYCKACISRFK-----DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~-~--~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~ 65 (326)
++-.||+|.+.+- + +-+--+||-..|+-|+-... .||.||....
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 3444999998521 1 23334799999999986553 3999998877
No 283
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=51.92 E-value=2.8 Score=36.74 Aligned_cols=32 Identities=28% Similarity=0.608 Sum_probs=23.8
Q ss_pred CcccccccccccCCC--eecccCCcchHHhHhcC
Q 020453 23 PLSCMICQALLFECS--KCTPCSHVYCKACISRF 54 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p--~~l~C~h~fC~~Cl~~~ 54 (326)
.-.|.||+--|-+.| ...+|.|-|=..|+-++
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRy 148 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARY 148 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHH
Confidence 456899988755545 55789998878888666
No 284
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=51.65 E-value=1.2e+02 Score=26.12 Aligned_cols=59 Identities=12% Similarity=-0.067 Sum_probs=40.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 219 LKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 219 l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
.....|++++|+..|++.++. .+... ......-++|.++...+++..|+..+++.+...
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~-------yP~s~----~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNR-------YPFGP----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-------CCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 334578889999888886552 22211 122345588999999999999998888766544
No 285
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=51.34 E-value=28 Score=27.13 Aligned_cols=30 Identities=23% Similarity=0.097 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
..|..-|.....-|+.+.|++.|.+++.+.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~ 73 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLA 73 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhc
Confidence 334444555555577777777777776665
No 286
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=51.20 E-value=2.1e+02 Score=26.62 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=52.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH-----HHhh-cCCCCCchhhhH-----------HHHHHHHHHHHHhcCCHHHHH
Q 020453 216 IGDLKYYGGDLQAARSYYVRSLNVRR-----DAVK-RHSNVPSQVLDV-----------AVSLAKVADVDRSIGNEDVAV 278 (326)
Q Consensus 216 l~~l~~~~~~~~~a~~~~~~sl~~~~-----~~~~-~~~~~~~~~~~l-----------a~~l~~l~~~~~~~~~~~~a~ 278 (326)
++......|+.++|....++.++... .... -...+....... ...+-.+|.+....|++.+|.
T Consensus 269 ~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~ 348 (398)
T PRK10747 269 MAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEAS 348 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35555566788888887777766110 0000 011111111111 223344678888889988888
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 279 DGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 279 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
++|+.++++ .|+..... .+ ..++.-.|+..++..+|++
T Consensus 349 ~~le~al~~------~P~~~~~~-~L--a~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 349 LAFRAALKQ------RPDAYDYA-WL--ADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHhc------CCCHHHHH-HH--HHHHHHcCCHHHHHHHHHH
Confidence 888877654 34443311 12 3444444555555444443
No 287
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=50.94 E-value=4.8 Score=26.72 Aligned_cols=11 Identities=27% Similarity=1.102 Sum_probs=7.2
Q ss_pred cchHHhHhcCC
Q 020453 45 VYCKACISRFK 55 (326)
Q Consensus 45 ~fC~~Cl~~~~ 55 (326)
.||+.||.+|.
T Consensus 11 gFCRNCLskWy 21 (68)
T PF06844_consen 11 GFCRNCLSKWY 21 (68)
T ss_dssp S--HHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 48999998884
No 288
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=50.45 E-value=40 Score=26.06 Aligned_cols=94 Identities=17% Similarity=0.137 Sum_probs=44.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhh--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 020453 222 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD--------VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 293 (326)
Q Consensus 222 ~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~--------la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~ 293 (326)
..++.+.++..+++++.+.+--+-.......+... ....+..++..+...|++++|+..++.++ ..
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l------~~ 91 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL------AL 91 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH------HH
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH------hc
Confidence 34566777777778877665322111111122222 22344455666777788777766655443 44
Q ss_pred CCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453 294 KPEEAGLEQRCWNSSTTNFQKNHLNQLPKF 323 (326)
Q Consensus 294 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (326)
+|.+..+-..+ ...+...|+...++..|
T Consensus 92 dP~~E~~~~~l--m~~~~~~g~~~~A~~~Y 119 (146)
T PF03704_consen 92 DPYDEEAYRLL--MRALAAQGRRAEALRVY 119 (146)
T ss_dssp STT-HHHHHHH--HHHHHHTT-HHHHHHHH
T ss_pred CCCCHHHHHHH--HHHHHHCcCHHHHHHHH
Confidence 56654444444 44444555555544444
No 289
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=50.38 E-value=44 Score=22.98 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
..+-..|......|+|++|+..|.++++.+...
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344444555666699999999999999999775
No 290
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.27 E-value=8.4 Score=26.01 Aligned_cols=25 Identities=24% Similarity=0.776 Sum_probs=19.7
Q ss_pred cCCcchHHhHhcCCC--CCCCCccccc
Q 020453 42 CSHVYCKACISRFKD--CPLCGADIEK 66 (326)
Q Consensus 42 C~h~fC~~Cl~~~~~--CP~Cr~~~~~ 66 (326)
--++||..|.+..+. ||.|.-.+..
T Consensus 27 fEcTFCadCae~~l~g~CPnCGGelv~ 53 (84)
T COG3813 27 FECTFCADCAENRLHGLCPNCGGELVA 53 (84)
T ss_pred EeeehhHhHHHHhhcCcCCCCCchhhc
Confidence 456899999997653 9999987763
No 291
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=49.70 E-value=77 Score=32.05 Aligned_cols=33 Identities=18% Similarity=0.093 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 208 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 240 (326)
Q Consensus 208 ~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~ 240 (326)
.+...+...|....++|+++.|+..|-++--..
T Consensus 704 evv~lee~wg~hl~~~~q~daainhfiea~~~~ 736 (1636)
T KOG3616|consen 704 EVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI 736 (1636)
T ss_pred HHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH
Confidence 445566777888888999999999887765443
No 292
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=49.64 E-value=9 Score=24.59 Aligned_cols=41 Identities=27% Similarity=0.703 Sum_probs=26.8
Q ss_pred ccccccccccCC-CeecccCC--cchHHhHhcCC--CCCCCCcccc
Q 020453 25 SCMICQALLFEC-SKCTPCSH--VYCKACISRFK--DCPLCGADIE 65 (326)
Q Consensus 25 ~C~iC~~~l~~~-p~~l~C~h--~fC~~Cl~~~~--~CP~Cr~~~~ 65 (326)
.|-.|...|..+ +-..-|.+ +||..|.+..+ .||.|.-.+.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCcCCCCccc
Confidence 466666654322 22334554 79999999883 5999987654
No 293
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.63 E-value=5.5 Score=40.24 Aligned_cols=33 Identities=27% Similarity=0.551 Sum_probs=26.7
Q ss_pred CCcccccccccccCCCe-ecccCCcchHHhHhcC
Q 020453 22 GPLSCMICQALLFECSK-CTPCSHVYCKACISRF 54 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~-~l~C~h~fC~~Cl~~~ 54 (326)
..-+|.+|...|...|. ..||||.|=+.|+.+.
T Consensus 816 p~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred CccchHHhcchhhcCcceeeeccchHHHHHHHHH
Confidence 45689999997666565 4799999999999765
No 294
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.70 E-value=69 Score=29.38 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=44.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHh
Q 020453 223 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ 302 (326)
Q Consensus 223 ~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~ 302 (326)
..+|..|++.++-.+. .+++.+ -..--|+|..+..+|+|++|++.|+-+.. ..++ ++.+--
T Consensus 35 ~rDytGAislLefk~~-----~~~EEE--------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-----~~~~-~~el~v 95 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLN-----LDREEE--------DSLQLWIAHCYFHLGDYEEALNVYTFLMN-----KDDA-PAELGV 95 (557)
T ss_pred cccchhHHHHHHHhhc-----cchhhh--------HHHHHHHHHHHHhhccHHHHHHHHHHHhc-----cCCC-Ccccch
Confidence 4577777776554432 122211 22345899999999999999887764332 1222 233444
Q ss_pred hccchhhhHHHHhHHhc
Q 020453 303 RCWNSSTTNFQKNHLNQ 319 (326)
Q Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (326)
++ .-.+.|+|.+.++
T Consensus 96 nL--Acc~FyLg~Y~eA 110 (557)
T KOG3785|consen 96 NL--ACCKFYLGQYIEA 110 (557)
T ss_pred hH--HHHHHHHHHHHHH
Confidence 45 5666677776655
No 295
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.47 E-value=8.4 Score=36.58 Aligned_cols=33 Identities=24% Similarity=0.701 Sum_probs=27.5
Q ss_pred CCcccccccccccC-CCeecccCCcchHHhHhcCC
Q 020453 22 GPLSCMICQALLFE-CSKCTPCSHVYCKACISRFK 55 (326)
Q Consensus 22 ~~l~C~iC~~~l~~-~p~~l~C~h~fC~~Cl~~~~ 55 (326)
....|.||... +. ....+.|||.||..|+..+.
T Consensus 69 ~~~~c~ic~~~-~~~~~~~~~c~H~~c~~cw~~yl 102 (444)
T KOG1815|consen 69 GDVQCGICVES-YDGEIIGLGCGHPFCPPCWTGYL 102 (444)
T ss_pred ccccCCcccCC-CcchhhhcCCCcHHHHHHHHHHh
Confidence 45789999998 45 37788999999999998764
No 296
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.27 E-value=1.6e+02 Score=24.58 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=14.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 265 ADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 265 ~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
|+++...|+.++|..-|++++...
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHcc
Confidence 566666666666666666665544
No 297
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=47.08 E-value=12 Score=29.74 Aligned_cols=44 Identities=18% Similarity=0.573 Sum_probs=29.8
Q ss_pred ccCCcccccccccccCCCeecccCCc--c---hHHhHhcCC------CCCCCCcccc
Q 020453 20 KIGPLSCMICQALLFECSKCTPCSHV--Y---CKACISRFK------DCPLCGADIE 65 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~~p~~l~C~h~--f---C~~Cl~~~~------~CP~Cr~~~~ 65 (326)
...+-.|-||.+. .. +-..||.=+ . =+.|+++|. .|+.|+..+.
T Consensus 5 s~~~~~CRIC~~~-~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDE-YD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCCeeEecCCC-CC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3456689999987 34 444566410 0 167999985 3999998876
No 298
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=46.81 E-value=16 Score=20.56 Aligned_cols=12 Identities=42% Similarity=0.772 Sum_probs=8.1
Q ss_pred cCCCCCCCCccc
Q 020453 53 RFKDCPLCGADI 64 (326)
Q Consensus 53 ~~~~CP~Cr~~~ 64 (326)
.-|.||.|...-
T Consensus 16 ~~~~CP~Cg~~~ 27 (33)
T cd00350 16 APWVCPVCGAPK 27 (33)
T ss_pred CCCcCcCCCCcH
Confidence 455699987643
No 299
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=46.52 E-value=35 Score=34.81 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=19.0
Q ss_pred hcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
...|++-.+.-+. .+++.-+|+...++.-|+
T Consensus 235 ~~~p~n~~~~~er--s~L~~~~G~~~~Am~~f~ 265 (895)
T KOG2076|consen 235 QANPSNWELIYER--SSLYQKTGDLKRAMETFL 265 (895)
T ss_pred hcCCcchHHHHHH--HHHHHHhChHHHHHHHHH
Confidence 3456665555444 677777777777666554
No 300
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=46.45 E-value=79 Score=27.38 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHHHh
Q 020453 226 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD----GFQEAIKRLESL 291 (326)
Q Consensus 226 ~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~l 291 (326)
.++|...|++++++.+... .+.++ ..+...||---..|+.+++.++|.+ .|++++..++.+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L--~pt~P---irLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l 208 (244)
T smart00101 144 AENTLVAYKSAQDIALAEL--PPTHP---IRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTL 208 (244)
T ss_pred HHHHHHHHHHHHHHHHccC--CCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 4577788888887755411 22222 2344456665678999999999884 455555556655
No 301
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=46.35 E-value=6.9 Score=28.50 Aligned_cols=23 Identities=39% Similarity=0.918 Sum_probs=19.6
Q ss_pred ccCCcchHHhHhcCCC----CCCCCcc
Q 020453 41 PCSHVYCKACISRFKD----CPLCGAD 63 (326)
Q Consensus 41 ~C~h~fC~~Cl~~~~~----CP~Cr~~ 63 (326)
.|-|.|=..||.+|.. ||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 4999999999999964 9998764
No 302
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.32 E-value=6.4 Score=34.39 Aligned_cols=24 Identities=25% Similarity=1.041 Sum_probs=18.0
Q ss_pred cCCcchHHhHhcCC-----------------CCCCCCcccc
Q 020453 42 CSHVYCKACISRFK-----------------DCPLCGADIE 65 (326)
Q Consensus 42 C~h~fC~~Cl~~~~-----------------~CP~Cr~~~~ 65 (326)
|..-.|.+|+-+|+ .||+||+.+-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 44456889998874 2999998875
No 303
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=45.96 E-value=1.4e+02 Score=22.98 Aligned_cols=74 Identities=12% Similarity=0.011 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
.|..-...+++|++++..-..+|.-...-.+-+.+ .-. -.+..+-+-+...+.+|..++|+..|+.+-+++.+-
T Consensus 60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd--eGk-lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 60 GLSGALAGLGRYDECLQSADRALRYFNRRGELHQD--EGK-LWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST--HHH-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc--cch-hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 34444455667777777666666654433332222 111 123344445778889999999999999999998764
No 304
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=45.26 E-value=70 Score=26.61 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=19.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHH
Q 020453 265 ADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLE 301 (326)
Q Consensus 265 ~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~ 301 (326)
.+.+..+..++.|...|.-++.-++.+ ..+|+++..+
T Consensus 98 ~Dtl~Ti~~~E~aR~EY~a~~~~mk~~s~eldP~~~~~l 136 (204)
T cd07661 98 ADTLQTIQRMEKCRTEYRAALLWMKSVSQELDPDTYKQL 136 (204)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHhhhcCCccchhH
Confidence 355555555555555555555555444 3455554433
No 305
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=44.95 E-value=1.4e+02 Score=22.78 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=37.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCc-hhHHhhccchhhhHHHHhHH
Q 020453 265 ADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRCWNSSTTNFQKNHL 317 (326)
Q Consensus 265 ~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~-~~~~~~~~~~~~~~~~~~~~ 317 (326)
+......|+++++-....++..|+..| ..+.+. ..+-.++ ..+|.|+...+
T Consensus 38 a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL--~~LY~y~~~~L 91 (124)
T TIGR00208 38 AAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELSASL--GALYDYMYRRL 91 (124)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHH--HHHHHHHHHHH
Confidence 444455588999999999999999988 444443 4577778 88888877554
No 306
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.74 E-value=2.2e+02 Score=25.15 Aligned_cols=51 Identities=22% Similarity=0.235 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 232 YYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 232 ~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
.|.=++.+..++.++.++.. -..++.|+.+.-+.|+.+.|..+++...+.-
T Consensus 192 Ey~iS~d~~~~vi~~~~e~~------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~ 242 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKYYPEQE------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVT 242 (366)
T ss_pred hhhhhHHHHHHHHHhCCccc------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34445555555555554422 3455677888888888888888887555443
No 307
>PF12854 PPR_1: PPR repeat
Probab=43.71 E-value=58 Score=18.23 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEA 284 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~ 284 (326)
..+++.|...+-..|+.++|.+.+++.
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 457888888999999999999888753
No 308
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=43.67 E-value=1.7e+02 Score=29.59 Aligned_cols=59 Identities=12% Similarity=0.056 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---------------HHHhhcCCCCCchhhhHHHHHHHHH
Q 020453 207 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR---------------RDAVKRHSNVPSQVLDVAVSLAKVA 265 (326)
Q Consensus 207 ~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~---------------~~~~~~~~~~~~~~~~la~~l~~l~ 265 (326)
+.+..+.++|++....+.+++.|.++|.+..... +..+...+++...+..++.-+...|
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svG 866 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVG 866 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhc
Confidence 3456678899999999999999999998754321 2334455555544444554444443
No 309
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=43.59 E-value=1.3e+02 Score=32.42 Aligned_cols=78 Identities=13% Similarity=0.066 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 208 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 208 ~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
..+....+++.+...+++++.|+.+.+.++++.+.+...... ..+.+...++.+.+..+.++-|+...+....+
T Consensus 1055 ~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l------~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1055 PTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKEL------ETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred chhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccch------hhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 345566788888888899999999999999977776664433 33556667889999999999999999999999
Q ss_pred HHHh
Q 020453 288 LESL 291 (326)
Q Consensus 288 ~~~l 291 (326)
+...
T Consensus 1129 y~~q 1132 (1236)
T KOG1839|consen 1129 YKEQ 1132 (1236)
T ss_pred HHHh
Confidence 9876
No 310
>PF13041 PPR_2: PPR repeat family
Probab=43.18 E-value=61 Score=19.70 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 259 VSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
.+++.+-..+-..|+.++|.+.|++..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467778888888999888888887665
No 311
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.12 E-value=2.5e+02 Score=25.29 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 020453 263 KVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 263 ~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
+++......|++..|+++-.+.+
T Consensus 183 niALaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 183 NLALAHYSSRQYASALKHISEII 205 (459)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Confidence 34555555566666665544433
No 312
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=42.79 E-value=15 Score=23.35 Aligned_cols=30 Identities=30% Similarity=0.741 Sum_probs=19.8
Q ss_pred cccccccc---ccCCCeecccCCcchHHhHhcC
Q 020453 25 SCMICQAL---LFECSKCTPCSHVYCKACISRF 54 (326)
Q Consensus 25 ~C~iC~~~---l~~~p~~l~C~h~fC~~Cl~~~ 54 (326)
.|++|... +........||+.||..|....
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 56777653 2223555679999999988644
No 313
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=42.05 E-value=2.4e+02 Score=28.49 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=36.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHHH--------------------HHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHH
Q 020453 219 LKYYGGDLQAARSYYVRSLNVR--------------------RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAV 278 (326)
Q Consensus 219 l~~~~~~~~~a~~~~~~sl~~~--------------------~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~ 278 (326)
.-.+.++++++...|+.++++. +..++.-..-+....+-+.+-||++..|...|+..+|.
T Consensus 494 ~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 494 LILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred ccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHH
Confidence 3344578888888888888743 11111111112222244556667766666666665555
Q ss_pred HHHHHHHH
Q 020453 279 DGFQEAIK 286 (326)
Q Consensus 279 ~~~~~~~~ 286 (326)
..+++|++
T Consensus 574 ~~l~EAlK 581 (777)
T KOG1128|consen 574 RKLKEALK 581 (777)
T ss_pred HHHHHHhh
Confidence 55554443
No 314
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=42.00 E-value=48 Score=17.29 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
+++.+-..+-..|+.++|.+.|++..
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHh
Confidence 35667778888899899988887654
No 315
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=41.99 E-value=12 Score=33.16 Aligned_cols=24 Identities=29% Similarity=1.024 Sum_probs=15.6
Q ss_pred ccCCcchHHhHhcCCC--------------CCCCCcccc
Q 020453 41 PCSHVYCKACISRFKD--------------CPLCGADIE 65 (326)
Q Consensus 41 ~C~h~fC~~Cl~~~~~--------------CP~Cr~~~~ 65 (326)
|||| .|..=...+|. ||.|-..+.
T Consensus 377 PCGH-v~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 377 PCGH-VCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred Cccc-ccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 7888 45544444552 999987665
No 316
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.26 E-value=1.3e+02 Score=26.43 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHh
Q 020453 223 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ 302 (326)
Q Consensus 223 ~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~ 302 (326)
.++|..|.+.|.. ..+.-+... ......-|||..+..+|+++.|...|..+...+ ..+|-..+.+-
T Consensus 154 sgdy~~A~~~F~~-------fi~~YP~s~----~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~---P~s~KApdall 219 (262)
T COG1729 154 SGDYAEAEQAFQA-------FIKKYPNST----YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY---PKSPKAPDALL 219 (262)
T ss_pred cCCHHHHHHHHHH-------HHHcCCCCc----ccchhHHHHHHHHHhcccchHHHHHHHHHHHhC---CCCCCChHHHH
Confidence 3455555555544 344445433 356778899999999999999998877655422 22333334443
Q ss_pred hccchhhhHHHHhHHhc
Q 020453 303 RCWNSSTTNFQKNHLNQ 319 (326)
Q Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (326)
.+ +.....+++...+
T Consensus 220 Kl--g~~~~~l~~~d~A 234 (262)
T COG1729 220 KL--GVSLGRLGNTDEA 234 (262)
T ss_pred HH--HHHHHHhcCHHHH
Confidence 44 5555555544433
No 317
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=40.84 E-value=9.6 Score=23.56 Aligned_cols=39 Identities=26% Similarity=0.734 Sum_probs=20.5
Q ss_pred cccccccccccCCCeecccCC-cchHHhHhcCCC----CCCCCcccc
Q 020453 24 LSCMICQALLFECSKCTPCSH-VYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 24 l~C~iC~~~l~~~p~~l~C~h-~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
+.|..|.-. +--.+.|.. -.|..|+..... ||.|..+++
T Consensus 3 ~nCKsCWf~---~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 3 YNCKSCWFA---NKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp ----SS-S-----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred ccChhhhhc---CCCeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 456666543 345566764 559999987753 999998765
No 318
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=39.53 E-value=2.3e+02 Score=23.75 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=18.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCc
Q 020453 265 ADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE 297 (326)
Q Consensus 265 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~ 297 (326)
.+.+..+..|+.|.-.|.-...-++++...|.+
T Consensus 97 ~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~~ 129 (201)
T cd07660 97 EDTLMTVKQYESARIEYDAYRNDLEALNLGPRD 129 (201)
T ss_pred cHHHHHHHHHHhhhHhHHHHhccHHHcccCCCc
Confidence 366666666666665555555444554334443
No 319
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=39.50 E-value=63 Score=17.32 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
+++.+...+...|+.+.|...+++..+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567777888888999998888876553
No 320
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=39.19 E-value=2.7e+02 Score=24.42 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=64.6
Q ss_pred hCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhhcCCCCCchhhh
Q 020453 178 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG-DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 256 (326)
Q Consensus 178 ~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~-~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~ 256 (326)
.++..-+..++..+..... ...++....++...=++|.-....+ +++.|...+++++++.....+.........--
T Consensus 6 ~~~~~~A~~~~~K~~~~~~---~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLN---SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hCCHHHHHHHHHHhhhHHh---cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3444555555555554443 2233445667777778888888888 99999999999999876532222221111111
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
....+..++.++...+.+ +.++++...++.+
T Consensus 83 r~~iL~~La~~~l~~~~~----~~~~ka~~~l~~l 113 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTY----ESVEKALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHcCCCh----HHHHHHHHHHHHH
Confidence 345566777777776664 3444556655555
No 321
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=39.15 E-value=9.2 Score=24.89 Aligned_cols=31 Identities=16% Similarity=0.461 Sum_probs=15.4
Q ss_pred ccccc--ccccccCCC------ee-cccCCcchHHhHhcC
Q 020453 24 LSCMI--CQALLFECS------KC-TPCSHVYCKACISRF 54 (326)
Q Consensus 24 l~C~i--C~~~l~~~p------~~-l~C~h~fC~~Cl~~~ 54 (326)
..||- |...+..+. ++ ..|++.||..|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 36766 776533321 22 238899998888765
No 322
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=38.56 E-value=3.1e+02 Score=25.07 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=44.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 221 YYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 221 ~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
.+.++.++|+++.++..+..+..-+ + ..++.....++.++-.+|+...+.+.+.+..+++.++
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e--~------~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~ 148 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKE--P------DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSL 148 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhcc--c------hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcc
Confidence 3445777888888887665443222 2 1344555567777779999999999999999999887
No 323
>PHA02862 5L protein; Provisional
Probab=38.30 E-value=13 Score=29.05 Aligned_cols=39 Identities=21% Similarity=0.612 Sum_probs=26.8
Q ss_pred ccccccccccCCCeecccCCc-----chHHhHhcCCC------CCCCCcccc
Q 020453 25 SCMICQALLFECSKCTPCSHV-----YCKACISRFKD------CPLCGADIE 65 (326)
Q Consensus 25 ~C~iC~~~l~~~p~~l~C~h~-----fC~~Cl~~~~~------CP~Cr~~~~ 65 (326)
.|-||++. -+ +..-||.=+ .=+.|+.+|.. ||.|+.++.
T Consensus 4 iCWIC~~~-~~-e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 4 ICWICNDV-CD-ERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred EEEEecCc-CC-CCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 58899887 44 334566411 11678988863 999998886
No 324
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=37.80 E-value=17 Score=33.28 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=23.7
Q ss_pred cccccccccccC-CCeecccCCcchHHhHhcC
Q 020453 24 LSCMICQALLFE-CSKCTPCSHVYCKACISRF 54 (326)
Q Consensus 24 l~C~iC~~~l~~-~p~~l~C~h~fC~~Cl~~~ 54 (326)
..||||+.+... --.+.-|..+.|..|+.++
T Consensus 75 ~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 75 TECPICFLYYPSAKNLVRCCSETICGECFAPF 106 (482)
T ss_pred ccCceeeeecccccchhhhhccchhhhheecc
Confidence 579999998433 1345579999999999766
No 325
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=37.75 E-value=1.9e+02 Score=25.86 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 225 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 225 ~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
++-.|+..|+++.++.+...-...+. .+..+++|. .-.+..+++++++..|++.|
T Consensus 177 elrqA~eKfEESkE~aE~sM~nlle~------d~eqvsqL~------~Li~aqLdfhrqs~~iL~~l 231 (366)
T KOG1118|consen 177 ELRQALEKFEESKELAEDSMFNLLEN------DVEQVSQLS------ALIQAQLDFHRQSTQILQEL 231 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc------CHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 34566677777766655322111110 022223332 22345678888888888777
No 326
>smart00336 BBOX B-Box-type zinc finger.
Probab=37.59 E-value=1.4 Score=26.14 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=11.1
Q ss_pred HHHHHHH-HHHHHHH
Q 020453 159 ELCSQLG-AVLGMLG 172 (326)
Q Consensus 159 ~~C~~H~-~~l~~~C 172 (326)
..|+.|+ +++.+||
T Consensus 4 ~~C~~h~~~~~~~~C 18 (42)
T smart00336 4 PKCDSHGDEPAEFFC 18 (42)
T ss_pred CcCCCCCCCceEEEC
Confidence 3688886 7888888
No 327
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=37.53 E-value=2.3e+02 Score=23.69 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=18.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 020453 216 IGDLKYYGGDLQAARSYYVRSLN 238 (326)
Q Consensus 216 l~~l~~~~~~~~~a~~~~~~sl~ 238 (326)
+++-...+|++.+|...|++++.
T Consensus 95 La~al~elGr~~EA~~hy~qals 117 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALS 117 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhc
Confidence 44555667899999999999886
No 328
>PRK04023 DNA polymerase II large subunit; Validated
Probab=37.31 E-value=38 Score=35.25 Aligned_cols=59 Identities=20% Similarity=0.529 Sum_probs=39.8
Q ss_pred CCcccccccccccCCCeecccCC-----cchHHhHhcCC--CCCCCCccccc-----ccccHHHHHHHHHHH
Q 020453 22 GPLSCMICQALLFECSKCTPCSH-----VYCKACISRFK--DCPLCGADIEK-----IEADTTLQDVVDRFI 81 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h-----~fC~~Cl~~~~--~CP~Cr~~~~~-----~~~n~~l~~~~~~~~ 81 (326)
....|+-|....+. .++..||. .||..|-.... .||.|...... +.....+...++.+.
T Consensus 625 g~RfCpsCG~~t~~-frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~~~s~~~i~l~~~~~~A~~~lg 695 (1121)
T PRK04023 625 GRRKCPSCGKETFY-RRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTPYSKRKIDLKELYDRALENLG 695 (1121)
T ss_pred cCccCCCCCCcCCc-ccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCCccceEEecHHHHHHHHHHHhC
Confidence 46689999998534 77778985 48999965443 39999988873 344444444444443
No 329
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.31 E-value=18 Score=35.66 Aligned_cols=39 Identities=28% Similarity=0.686 Sum_probs=30.5
Q ss_pred CcccccccccccCC----CeecccCCcchHHhHhcCCC-CCCCCc
Q 020453 23 PLSCMICQALLFEC----SKCTPCSHVYCKACISRFKD-CPLCGA 62 (326)
Q Consensus 23 ~l~C~iC~~~l~~~----p~~l~C~h~fC~~Cl~~~~~-CP~Cr~ 62 (326)
.-+|-+|+.. -+. +.++.|+..||.+|.....+ ||.|.-
T Consensus 654 ~r~C~vcq~p-edse~~v~rt~~C~~~~C~~c~~~~~~~~~vC~~ 697 (717)
T KOG3726|consen 654 IRTCKVCQLP-EDSETDVCRTTFCYTPYCVACSLDYASISEVCGP 697 (717)
T ss_pred HHHHHHhcCC-cCccccccCccccCCcchHhhhhhhhccCcccCc
Confidence 4578899876 331 77789999999999988776 999963
No 330
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=35.37 E-value=2e+02 Score=21.79 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=54.8
Q ss_pred HHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhh
Q 020453 176 RAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL 255 (326)
Q Consensus 176 ~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~ 255 (326)
...|+.-.++++++.+... -|.... .....=.++.....+|++++|+..+++.+.. .+... ..
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~--gL~~~~------~~~a~i~lastlr~LG~~deA~~~L~~~~~~-------~p~~~--~~ 74 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAA--GLSGAD------RRRALIQLASTLRNLGRYDEALALLEEALEE-------FPDDE--LN 74 (120)
T ss_pred HhcCCHHHHHHHHHHHHHc--CCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCcc--cc
Confidence 3457888899998877652 222211 1123335777888899999999988876432 12100 00
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 256 DVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 256 ~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
...-.-++.+...+|++++|++.+-.++
T Consensus 75 --~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 75 --AALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111235677888899888887665443
No 331
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.70 E-value=5e+02 Score=26.30 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=13.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHh
Q 020453 269 RSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
...+.|.+++..++-....++..
T Consensus 143 ~~kr~y~e~a~~lqai~~ll~~F 165 (793)
T KOG2180|consen 143 LSKRSYGEAASPLQAILQLLNHF 165 (793)
T ss_pred HhhccHHHHHhHHHHHHHHHHHH
Confidence 33466666666666666666544
No 332
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=34.37 E-value=1.1e+02 Score=30.22 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=16.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHh
Q 020453 268 DRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQ 302 (326)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~~~~~~ 302 (326)
|...|-+...-.-|.+++.-+++. ...|++-.++.
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILR 113 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 444444444444444444444443 44555544433
No 334
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=34.35 E-value=17 Score=36.67 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=5.0
Q ss_pred hccchhhhHHHH
Q 020453 303 RCWNSSTTNFQK 314 (326)
Q Consensus 303 ~~~~~~~~~~~~ 314 (326)
++|..+..++..
T Consensus 920 ~~v~~~~~~~~~ 931 (950)
T KOG1952|consen 920 NLVDSSDKNWGS 931 (950)
T ss_pred cccccCccccch
Confidence 344444444443
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.13 E-value=3.4e+02 Score=24.13 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=35.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453 198 LPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 249 (326)
Q Consensus 198 L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~ 249 (326)
|.+...+|.- .+++.+-.+...++.|++-..+|.+.+.-.+..+.++-.
T Consensus 56 lEgEKgeWGF---KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS 104 (440)
T KOG1464|consen 56 LEGEKGEWGF---KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS 104 (440)
T ss_pred cccccchhHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4444555532 234556667888999999999999999988887776543
No 336
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=33.81 E-value=13 Score=27.03 Aligned_cols=28 Identities=18% Similarity=0.503 Sum_probs=18.7
Q ss_pred CCcccccccccccCCCeecc--cCCcchHHh
Q 020453 22 GPLSCMICQALLFECSKCTP--CSHVYCKAC 50 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~--C~h~fC~~C 50 (326)
++|+|..|+.+ .-.-..-. =|+.+|..|
T Consensus 69 DEFTCssCFLV-~HRSqLa~~~~g~~iC~DC 98 (99)
T PF13834_consen 69 DEFTCSSCFLV-HHRSQLAREKDGQPICRDC 98 (99)
T ss_pred CceeeeeeeeE-echhhhccccCCCEecccc
Confidence 68999999987 33222221 277888877
No 337
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=33.03 E-value=14 Score=33.86 Aligned_cols=10 Identities=20% Similarity=0.873 Sum_probs=0.0
Q ss_pred Cccccccccc
Q 020453 23 PLSCMICQAL 32 (326)
Q Consensus 23 ~l~C~iC~~~ 32 (326)
.-+||+|+..
T Consensus 328 ~r~CPlCr~~ 337 (416)
T PF04710_consen 328 SRTCPLCRQV 337 (416)
T ss_dssp ----------
T ss_pred cccCCCcccc
Confidence 5689999864
No 338
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=33.03 E-value=2.4e+02 Score=28.76 Aligned_cols=75 Identities=23% Similarity=0.235 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLA-KVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
..+.|++...+.++++|+.+|.+--...+.+.-...+.. +.+..|. .-|.-.+.+|+++.|+..|-++....+-+
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp----~evv~lee~wg~hl~~~~q~daainhfiea~~~~kai 739 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP----EEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAI 739 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc----HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 344566666677788888877653332222111111111 2233333 34677778888888888877776655544
No 339
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.60 E-value=3.2e+02 Score=27.00 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
.+-|.+-++...|+|.+|++.++.++.+.++-
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~ 208 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKALRICREK 208 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh
Confidence 34567888899999999999999998887664
No 340
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=32.60 E-value=45 Score=36.38 Aligned_cols=43 Identities=30% Similarity=0.659 Sum_probs=28.3
Q ss_pred Ccccccccc-cccC-CCeecccCCcchHHh----HhcCC----------CCCCCCcccc
Q 020453 23 PLSCMICQA-LLFE-CSKCTPCSHVYCKAC----ISRFK----------DCPLCGADIE 65 (326)
Q Consensus 23 ~l~C~iC~~-~l~~-~p~~l~C~h~fC~~C----l~~~~----------~CP~Cr~~~~ 65 (326)
.-.|-||+- .|-. +-..|.|+|.|=..| +++.| .||.|...+.
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 346788875 2222 346689999994444 45444 2999998766
No 341
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=32.51 E-value=19 Score=22.81 Aligned_cols=34 Identities=24% Similarity=0.634 Sum_probs=19.9
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcC------CCCCCCCcc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGAD 63 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~------~~CP~Cr~~ 63 (326)
+.+.||.|... ++.. . ++.-|.... ..||.|...
T Consensus 1 ~~f~CP~C~~~-~~~~-~------L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKG-FSES-S------LVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCc-cCHH-H------HHHHHHhHCcCCCCCccCCCchhh
Confidence 35789999885 5622 2 223344332 349999863
No 342
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=32.00 E-value=85 Score=16.60 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 261 LAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 261 l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
++.+-..+...|+.++|.+.|.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556677788899888888887654
No 343
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=31.70 E-value=2e+02 Score=27.97 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
..--++......|++++|+.+..++++. .+. ++..+-..|.++...|++.+|.+.++.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h-------tPt-------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH-------TPT-------LVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc-------CCC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 3345566667778888888877776543 333 3445556788888888888888877766544
No 344
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.29 E-value=2.1e+02 Score=24.32 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHHHH
Q 020453 272 GNEDVAVDGFQEAIKR 287 (326)
Q Consensus 272 ~~~~~a~~~~~~~~~~ 287 (326)
-+..+|+.+|+..+.+
T Consensus 145 a~~~e~a~wy~dyLGl 160 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGL 160 (246)
T ss_pred hccHHHHHHHHHhcCc
Confidence 4455667777777655
No 345
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=31.16 E-value=2.4e+02 Score=23.51 Aligned_cols=20 Identities=5% Similarity=0.149 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 020453 225 DLQAARSYYVRSLNVRRDAV 244 (326)
Q Consensus 225 ~~~~a~~~~~~sl~~~~~~~ 244 (326)
+..-++..|++.|+-.+...
T Consensus 129 ~~~lvk~e~EqLL~YK~~ql 148 (195)
T PF12761_consen 129 KPALVKREFEQLLDYKERQL 148 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888655444
No 346
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.02 E-value=2.9e+02 Score=23.70 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 262 AKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 262 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
-.+|..+...|++++|+++|+.+...+++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~ 210 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRR 210 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999766653
No 347
>PLN03218 maturation of RBCL 1; Provisional
Probab=29.94 E-value=7.3e+02 Score=26.76 Aligned_cols=130 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453 173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 252 (326)
Q Consensus 173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~ 252 (326)
..+...++...+..+++........+.+... ..+.+-......|++++|...|+++.+. .-.+.
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v--------TynaLI~ay~k~G~ldeA~elf~~M~e~-----gi~p~--- 613 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHI--------TVGALMKACANAGQVDRAKEVYQMIHEY-----NIKGT--- 613 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH--------HHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCC---
Q ss_pred hhhhHHHHHHHHHHHHHhcCCHHHHHHHH----------------------------HHHHHHHHHh--hcCCCchhHHh
Q 020453 253 QVLDVAVSLAKVADVDRSIGNEDVAVDGF----------------------------QEAIKRLESL--TLKPEEAGLEQ 302 (326)
Q Consensus 253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~----------------------------~~~~~~~~~l--~~~p~~~~~~~ 302 (326)
..+++.+...+...|+.++|++.| +++..+++.+ ...+.+..+-.
T Consensus 614 -----~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 614 -----PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred -----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q ss_pred hccchhhhHHHHhHHhcCccccc
Q 020453 303 RCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.+ ...+...|+...+...|++
T Consensus 689 sL--I~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 689 SL--MGACSNAKNWKKALELYED 709 (1060)
T ss_pred HH--HHHHHhCCCHHHHHHHHHH
No 348
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=29.78 E-value=2.3e+02 Score=20.83 Aligned_cols=29 Identities=14% Similarity=-0.008 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhHHh
Q 020453 274 EDVAVDGFQEAIKRLESLTLKPEEAGLEQ 302 (326)
Q Consensus 274 ~~~a~~~~~~~~~~~~~l~~~p~~~~~~~ 302 (326)
.+..+.....+..-.+.+...++.+.++.
T Consensus 84 l~~~l~~l~~~~~~~e~~l~~~~~~e~L~ 112 (127)
T smart00502 84 LTQKQEKLSHAINFTEEALNSGDPTELLL 112 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 33344444445555555422344444443
No 349
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=29.53 E-value=15 Score=36.70 Aligned_cols=43 Identities=16% Similarity=0.350 Sum_probs=31.7
Q ss_pred CCcccccccccccCC----Ceecc---cCCcchHHhHhcCCC----------CCCCCcccc
Q 020453 22 GPLSCMICQALLFEC----SKCTP---CSHVYCKACISRFKD----------CPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~----p~~l~---C~h~fC~~Cl~~~~~----------CP~Cr~~~~ 65 (326)
+.-+|++|..- +.+ --..| |+|.||..||..|.. |+.|...+.
T Consensus 95 ~s~Ss~~C~~E-~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKE-HSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhhee-cCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 45678888877 454 23345 999999999998852 788877666
No 350
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.49 E-value=3.4e+02 Score=22.70 Aligned_cols=13 Identities=23% Similarity=0.233 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 020453 276 VAVDGFQEAIKRL 288 (326)
Q Consensus 276 ~a~~~~~~~~~~~ 288 (326)
-|.+.|-+|....
T Consensus 80 ~a~QEyvEA~~l~ 92 (204)
T COG2178 80 TALQEYVEATLLY 92 (204)
T ss_pred chHHHHHHHHHHH
Confidence 3344444444333
No 351
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=29.43 E-value=16 Score=23.72 Aligned_cols=14 Identities=21% Similarity=0.809 Sum_probs=12.0
Q ss_pred ccCCcchHHhHhcC
Q 020453 41 PCSHVYCKACISRF 54 (326)
Q Consensus 41 ~C~h~fC~~Cl~~~ 54 (326)
.|++.||..|...|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 58999999998776
No 352
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=29.37 E-value=2.5e+02 Score=24.17 Aligned_cols=68 Identities=10% Similarity=-0.036 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHH
Q 020453 202 DLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG 280 (326)
Q Consensus 202 ~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~ 280 (326)
...++..++..+-.|+..+...+.+..|+..|+..++-.. ... ..-..|-.++..+..+|..+.|.+.
T Consensus 167 l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-------~t~----~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 167 LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYP-------DTQ----ATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCC-------CCc----hHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3456677777777788888888899888888877765322 111 1234566678888888887777654
No 353
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.07 E-value=18 Score=25.63 Aligned_cols=11 Identities=27% Similarity=1.029 Sum_probs=9.5
Q ss_pred cchHHhHhcCC
Q 020453 45 VYCKACISRFK 55 (326)
Q Consensus 45 ~fC~~Cl~~~~ 55 (326)
.||+.|+..|.
T Consensus 42 gFCRNCLs~Wy 52 (104)
T COG3492 42 GFCRNCLSNWY 52 (104)
T ss_pred HHHHHHHHHHH
Confidence 59999999885
No 354
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=28.96 E-value=3.3e+02 Score=25.04 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHHH-----HHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 225 DLQAARSYYVRSLNVR-----RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 225 ~~~~a~~~~~~sl~~~-----~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
.|.++...|..++... -.+..+.+ ..+.+|-.++.+...+|+++.|.++.++|+=.+++.
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~P-------yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~ 73 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLLQKNP-------YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERA 73 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4556666666665522 22334444 356788889999999999999999999999999875
No 355
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.86 E-value=3.5e+02 Score=22.68 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=7.1
Q ss_pred hcCCHHHHHHHHHHHH
Q 020453 222 YGGDLQAARSYYVRSL 237 (326)
Q Consensus 222 ~~~~~~~a~~~~~~sl 237 (326)
..+++++|...+++++
T Consensus 101 e~~~~d~A~aqL~~~l 116 (207)
T COG2976 101 EANNLDKAEAQLKQAL 116 (207)
T ss_pred hhccHHHHHHHHHHHH
Confidence 3344444444444444
No 356
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=28.53 E-value=1e+02 Score=27.45 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhc
Q 020453 259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRC 304 (326)
Q Consensus 259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~ 304 (326)
..++-++.+...+|++++|.+.+++++ ..+|.++.++.|+
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al------~~~~~~~d~LaNl 241 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEAL------EKDPNDPDTLANL 241 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHC------CC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH------HhccCCHHHHHHH
Confidence 457778899999999999998877653 3455555656555
No 357
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=28.49 E-value=2.7e+02 Score=23.82 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 226 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 226 ~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
.+.|...|++++++.+.... +.+ -.-+.-.||.-...|+.+|+.++|.+.-+++..-.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~--~~~---p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELP--PTH---PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSC--TTS---HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccC--CCC---cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 36788888899888776422 222 12344456665688999999999997777765443
No 358
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.03 E-value=23 Score=28.60 Aligned_cols=25 Identities=24% Similarity=0.915 Sum_probs=20.8
Q ss_pred ccCCcchHHhHhcCC---------------CCCCCCcccc
Q 020453 41 PCSHVYCKACISRFK---------------DCPLCGADIE 65 (326)
Q Consensus 41 ~C~h~fC~~Cl~~~~---------------~CP~Cr~~~~ 65 (326)
.||.+|=.-|+..|. .||.|..++.
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 599999999998884 2999988765
No 359
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=27.97 E-value=2.6e+02 Score=20.94 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCCCCCch-hhh--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHhhc
Q 020453 235 RSLNVRRDAVKRHSNVPSQ-VLD--VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRC 304 (326)
Q Consensus 235 ~sl~~~~~~~~~~~~~~~~-~~~--la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~~~~~~~~ 304 (326)
++|+++++..-...++... +.. -...+..++ ..+.+.+--..++..+++-..+- ...|..|..+-.+
T Consensus 14 KAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA---~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~l 84 (111)
T PF04781_consen 14 KALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA---KKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFEL 84 (111)
T ss_pred HHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH---HhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHH
Confidence 5666777665554444321 111 111222233 22334444556677777777665 5566666655444
No 360
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=27.77 E-value=3.5e+02 Score=22.30 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=36.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
.+......|++.+|+..|++.+.. .+... ......=+++.++...|++..|+..+++-+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~-------~P~s~----~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDR-------YPNSP----YAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH--------TTST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-------CCCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344456678888888888876443 22211 1223445778899999998888877665543
No 361
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=27.40 E-value=23 Score=20.59 Aligned_cols=10 Identities=30% Similarity=0.839 Sum_probs=5.8
Q ss_pred cccccccccc
Q 020453 24 LSCMICQALL 33 (326)
Q Consensus 24 l~C~iC~~~l 33 (326)
.+||-|.-.|
T Consensus 3 i~CP~C~~~f 12 (37)
T PF13719_consen 3 ITCPNCQTRF 12 (37)
T ss_pred EECCCCCceE
Confidence 3566666653
No 362
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=26.94 E-value=6.2e+02 Score=24.95 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=30.3
Q ss_pred HHHHhhcCCCCCchhhhHHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 240 RRDAVKRHSNVPSQVLDVAVSLAKVA------DVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 240 ~~~~~~~~~~~~~~~~~la~~l~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
++.+......-..+.-.+-..|.++. ..+..-|++.+|.+.+.+....+..+
T Consensus 153 rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l 210 (569)
T PRK04778 153 RKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAAL 210 (569)
T ss_pred HHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443 34555599999998887776666665
No 363
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=26.92 E-value=1.5e+02 Score=27.82 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=10.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 020453 264 VADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
++.++...++..+|+..+++++
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL 227 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEAL 227 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHH
Confidence 3444444444445555544444
No 364
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=26.42 E-value=1.4e+02 Score=19.57 Aligned_cols=31 Identities=26% Similarity=0.728 Sum_probs=17.2
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC--CCCCCCc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK--DCPLCGA 62 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~--~CP~Cr~ 62 (326)
..|.||.|.+.+.. -|..|-.... .||.|..
T Consensus 24 ~~F~CPnCG~~~I~----------RC~~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 24 VKFLCPNCGEVIIY----------RCEKCRKQSNPYTCPKCGF 56 (59)
T ss_pred CEeeCCCCCCeeEe----------echhHHhcCCceECCCCCC
Confidence 35667777654212 1566665543 3888764
No 365
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=26.39 E-value=96 Score=29.06 Aligned_cols=62 Identities=23% Similarity=0.278 Sum_probs=34.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
-|+-....|.|..|-..|..+|.+- +.++. -.+..+-+.+.+...+|+..+|+.--+++++|
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~id-------P~n~~---~naklY~nra~v~~rLgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNID-------PSNKK---TNAKLYGNRALVNIRLGRLREAISDCNEALKI 316 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCC-------ccccc---hhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence 3444455677777777777766643 22210 13444555666666666666666544444444
No 366
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=26.25 E-value=2.1e+02 Score=24.00 Aligned_cols=55 Identities=9% Similarity=-0.052 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhc
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQ 319 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 319 (326)
..-.||..|.. .+.++++.+|..+++....- +.-++.++..+ .+++.-++++..+
T Consensus 143 lq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~--~~~n~eil~sL--as~~~~~~~~e~A 197 (203)
T PF11207_consen 143 LQYALATYYTK-RDPEKTIQLLLRALELSNPD--DNFNPEILKSL--ASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHH--HHHHHHhcchhhh
Confidence 33445655654 77889999999888877542 13345677778 8888888777665
No 367
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=26.22 E-value=1.8e+02 Score=18.44 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 261 LAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 261 l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
+-.+|..+..+|+|.+|..+.+..+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34567778889998888877664443
No 368
>PRK15331 chaperone protein SicA; Provisional
Probab=25.98 E-value=1.5e+02 Score=24.00 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
|+.+...+++|++|+..|..+..+....-....- .|..+-.+|+...|...|+.++.
T Consensus 77 Laa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~--------------agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 77 LAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF--------------TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch--------------HHHHHHHhCCHHHHHHHHHHHHh
No 369
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.96 E-value=24 Score=27.06 Aligned_cols=40 Identities=33% Similarity=0.728 Sum_probs=24.2
Q ss_pred CCcccccccccccCCCeecccCC-------cchHHhHhcC--------CCCCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSH-------VYCKACISRF--------KDCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h-------~fC~~Cl~~~--------~~CP~Cr~~~~ 65 (326)
+..+|-||+..=|.+ -||| .||.+|-.+. |.|..|+....
T Consensus 64 ddatC~IC~KTKFAD----G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~ 118 (169)
T KOG3799|consen 64 DDATCGICHKTKFAD----GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQE 118 (169)
T ss_pred cCcchhhhhhccccc----ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHH
Confidence 577999999863443 4555 4455554332 34777776543
No 370
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=25.57 E-value=5.2e+02 Score=23.63 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLN 238 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~ 238 (326)
.+|.+....|+|++|+..++..++
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHH
Confidence 468888888999999998887776
No 371
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=25.52 E-value=6.4e+02 Score=24.61 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 020453 261 LAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 293 (326)
Q Consensus 261 l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~ 293 (326)
+...|..+..+|++-.|+..|..+..+++....
T Consensus 308 ~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 308 ETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 344688999999999999999999999988733
No 372
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=25.21 E-value=5e+02 Score=26.55 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=20.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453 264 VADVDRSIGNEDVAVDGFQEAIKRLE 289 (326)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~~~~ 289 (326)
+|.+...+|+.++|.+-|+-++.+-+
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhcc
Confidence 67788888888888888887776543
No 373
>KOG4543 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.03 E-value=48 Score=26.84 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCCCCCCC--cccCCcccccccccccCCCe-ecccCCcchHHhHhc
Q 020453 1 MDSASIPPKCPFGYDAQS--FKIGPLSCMICQALLFECSK-CTPCSHVYCKACISR 53 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~--~~~~~l~C~iC~~~l~~~p~-~l~C~h~fC~~Cl~~ 53 (326)
|+-+++||...+.-.... +..-...|++|...+--++- .+-=+-+||..|..+
T Consensus 132 mrdpfrpP~p~~a~kp~~~~~~~~Gt~cs~c~~~vc~~~acs~~~~Atfc~pC~kr 187 (208)
T KOG4543|consen 132 MRDPFRPPGPACARKPAELGAAMPGTVCSPCGAAVCPRGACSQLGAATFCGPCSKR 187 (208)
T ss_pred ccCCCCCCChhhhcChhhhcccccCCccccccCccccCCceeeeeecccccchhHH
Confidence 556667766666544444 44466778888775333332 122344667666643
No 374
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.98 E-value=9.3e+02 Score=26.29 Aligned_cols=7 Identities=14% Similarity=0.795 Sum_probs=3.4
Q ss_pred HHhHhcC
Q 020453 48 KACISRF 54 (326)
Q Consensus 48 ~~Cl~~~ 54 (326)
..|...|
T Consensus 1163 h~CF~~W 1169 (1758)
T KOG0994|consen 1163 HECFQTW 1169 (1758)
T ss_pred HHHHHHH
Confidence 3455545
No 375
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=24.97 E-value=2.3e+02 Score=21.86 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=5.5
Q ss_pred HHHHHHHHHHh
Q 020453 281 FQEAIKRLESL 291 (326)
Q Consensus 281 ~~~~~~~~~~l 291 (326)
+++.+..++.+
T Consensus 103 L~~~v~~ie~L 113 (131)
T PF10158_consen 103 LNQTVPSIETL 113 (131)
T ss_pred HHHHHHHHHHH
Confidence 44455555554
No 376
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=24.80 E-value=2.1e+02 Score=19.98 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhcCCCc-----hhHHhhccchhhhHHHHhHHhcCccc
Q 020453 279 DGFQEAIKRLESLTLKPEE-----AGLEQRCWNSSTTNFQKNHLNQLPKF 323 (326)
Q Consensus 279 ~~~~~~~~~~~~l~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (326)
+..++.+..++.+..+|.+ .+++.++ ..|..+|...+.+|
T Consensus 50 sq~r~~i~amRsiGt~~~~~~Gl~dDlle~L-----q~yQk~MG~~mqrf 94 (95)
T PF08289_consen 50 SQARSMIQAMRSIGTHPKNSEGLADDLLENL-----QAYQKRMGAQMQRF 94 (95)
T ss_pred HHHHHHHHHHHHhcCCCCCccchHHHHHHHH-----HHHHHHHhHHHHhc
Confidence 3344445555555445544 2244433 33445555445555
No 377
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=24.79 E-value=45 Score=21.10 Aligned_cols=10 Identities=50% Similarity=1.551 Sum_probs=5.0
Q ss_pred CCCCCccccc
Q 020453 57 CPLCGADIEK 66 (326)
Q Consensus 57 CP~Cr~~~~~ 66 (326)
||+|..++..
T Consensus 23 CPlC~r~l~~ 32 (54)
T PF04423_consen 23 CPLCGRPLDE 32 (54)
T ss_dssp -TTT--EE-H
T ss_pred CCCCCCCCCH
Confidence 9999988774
No 378
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=24.50 E-value=2e+02 Score=29.76 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhhcCCC
Q 020453 233 YVRSLNVRRDAVKRHSN 249 (326)
Q Consensus 233 ~~~sl~~~~~~~~~~~~ 249 (326)
|.++++...++..+.+.
T Consensus 25 fkkal~~~~kllkk~Pn 41 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPN 41 (932)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 44555544444444444
No 379
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=24.48 E-value=1.3e+02 Score=17.78 Aligned_cols=27 Identities=11% Similarity=-0.018 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 020453 205 IIHTLSVSLNKIGDLKYYGGDLQAARS 231 (326)
Q Consensus 205 ~~~~i~~~~~~l~~l~~~~~~~~~a~~ 231 (326)
+++.+=..++.|.+...++...++.+.
T Consensus 9 lkqll~rle~eirett~sl~ninksid 35 (46)
T PF08181_consen 9 LKQLLWRLENEIRETTDSLRNINKSID 35 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344444444555544433333333333
No 380
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=24.39 E-value=44 Score=30.05 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=22.7
Q ss_pred ccCCcccccccccccC-CCeecccCCcchHHhHhcCC
Q 020453 20 KIGPLSCMICQALLFE-CSKCTPCSHVYCKACISRFK 55 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~-~p~~l~C~h~fC~~Cl~~~~ 55 (326)
..+.+.|.-|..+ .. +=++=.-..+||.+|++...
T Consensus 21 l~~L~FCRyC~kl-rc~~Cv~hEvdshfCp~CLEn~p 56 (449)
T KOG3896|consen 21 LPDLVFCRYCFKL-RCDDCVLHEVDSHFCPRCLENSP 56 (449)
T ss_pred ccceeeeeccccc-ccccccccccccccchhhccCCC
Confidence 4466788888776 33 22333345579999998874
No 381
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=24.07 E-value=16 Score=20.40 Aligned_cols=19 Identities=42% Similarity=1.071 Sum_probs=8.6
Q ss_pred CcchHHhHhcCC--------CCCCCCc
Q 020453 44 HVYCKACISRFK--------DCPLCGA 62 (326)
Q Consensus 44 h~fC~~Cl~~~~--------~CP~Cr~ 62 (326)
|.||..|-.+.. .||.|..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 556666654431 2777764
No 382
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.93 E-value=2.4e+02 Score=25.41 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLN 238 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~ 238 (326)
...+.+-+.+..|++++|++.|+.+++
T Consensus 146 ~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 146 GQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred hhccchheeeccccHHHHHHHHHHHHh
Confidence 445666677777888888887776665
No 383
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=23.61 E-value=3.9e+02 Score=23.11 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHh
Q 020453 278 VDGFQEAIKRLESL 291 (326)
Q Consensus 278 ~~~~~~~~~~~~~l 291 (326)
++|++++.++++.+
T Consensus 207 l~YH~~a~e~L~~l 220 (244)
T cd07595 207 REYHRTALSVLEAV 220 (244)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555544
No 384
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=23.34 E-value=7.9e+02 Score=25.46 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHh-cCCHHHHHHHH
Q 020453 203 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS-IGNEDVAVDGF 281 (326)
Q Consensus 203 ~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~-~~~~~~a~~~~ 281 (326)
.+.+..|....+.|-.+.....+-+.|+..+.++++..... +.. ++..-..++++-.+++. -|..+.|++.-
T Consensus 389 aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~m-gth------l~mad~Q~s~fk~Lke~aegsrrraIeQc 461 (1265)
T KOG0976|consen 389 AERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLM-GTH------LSMADYQLSNFKVLKEHAEGSRRRAIEQC 461 (1265)
T ss_pred HHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHH-hHH------HHHHHHHHhhHHHHHHhhhhhHhhHHHHH
Confidence 33444444444444444444445555555555554422211 111 11112223333333332 24556777777
Q ss_pred HHHHHHHHHh
Q 020453 282 QEAIKRLESL 291 (326)
Q Consensus 282 ~~~~~~~~~l 291 (326)
++.+..++.+
T Consensus 462 nemv~rir~l 471 (1265)
T KOG0976|consen 462 NEMVDRIRAL 471 (1265)
T ss_pred HHHHHHHHHH
Confidence 7777777666
No 385
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=23.28 E-value=2.6e+02 Score=19.28 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=25.3
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020453 221 YYGGDLQAARSYYVRSLNVRRDAVKRHSNV 250 (326)
Q Consensus 221 ~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~ 250 (326)
...|++++|+.+|+++++...++....++.
T Consensus 17 D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~ 46 (75)
T cd02682 17 EKEGNAEDAITNYKKAIEVLSQIVKNYPDS 46 (75)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 567899999999999999888877776664
No 386
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.28 E-value=47 Score=33.21 Aligned_cols=44 Identities=30% Similarity=0.837 Sum_probs=30.9
Q ss_pred CCcccccccccccCC-------C--eecccCCcc--------------------hHHhHhcCC------------CCCCC
Q 020453 22 GPLSCMICQALLFEC-------S--KCTPCSHVY--------------------CKACISRFK------------DCPLC 60 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~-------p--~~l~C~h~f--------------------C~~Cl~~~~------------~CP~C 60 (326)
+.-+|+-|+.-++++ | .+..||..| |..|.+++. .||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 567899999876663 1 234688877 888887763 29999
Q ss_pred Ccccc
Q 020453 61 GADIE 65 (326)
Q Consensus 61 r~~~~ 65 (326)
.=.+.
T Consensus 180 GP~~~ 184 (750)
T COG0068 180 GPHLF 184 (750)
T ss_pred CCCeE
Confidence 75443
No 387
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=22.98 E-value=3.4e+02 Score=27.36 Aligned_cols=25 Identities=16% Similarity=-0.023 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSL 237 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl 237 (326)
.+.|-......|+.++|...|.++.
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3445555555666677776666653
No 388
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=22.92 E-value=7.1e+02 Score=24.22 Aligned_cols=95 Identities=8% Similarity=0.122 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHHHHhhcCCCCCchhhhHHHHHHH
Q 020453 188 FADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARS----YYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAK 263 (326)
Q Consensus 188 ~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~----~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~ 263 (326)
.+.+..+.+.+.-..+.+++.++.....+.++.....++....+ .|..+.+. .+-...++ ..++...+..
T Consensus 112 ~E~a~~L~r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~----lGI~G~ni--r~ELl~l~~~ 185 (507)
T PF05600_consen 112 AEAAQILVRNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQ----LGIKGENI--REELLELVKE 185 (507)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----hCCccchh--HHHHHHHHHh
Confidence 34455555555555666666666666666666655544444333 33333221 11111211 1122222222
Q ss_pred H----HHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 264 V----ADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 264 l----~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
| ..+-+.+.+..+|+++|+....-.
T Consensus 186 LP~~~~~i~~~i~~l~~aie~Y~~f~~~~ 214 (507)
T PF05600_consen 186 LPSLFDEIVEAISDLQEAIEYYQAFVEFV 214 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223333345778888887766643
No 389
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=22.68 E-value=7.5e+02 Score=24.37 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=19.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 266 DVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
..+...|++.+|.+.+.+....+..+
T Consensus 181 ~~lt~~GD~~~A~eil~~l~~~~~~l 206 (560)
T PF06160_consen 181 EELTENGDYLEAREILEKLKEETDEL 206 (560)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 34555699999998887777666665
No 390
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=22.56 E-value=3.7e+02 Score=24.58 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=47.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH---HHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-
Q 020453 216 IGDLKYYGGDLQAARSYYVRSLNVR---RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL- 291 (326)
Q Consensus 216 l~~l~~~~~~~~~a~~~~~~sl~~~---~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l- 291 (326)
+.++--++.+.+..+.+|.+-++.. +.++. .....+..+|+.+|.|..|..+.+-+..+.++-
T Consensus 39 vSEiMLQQT~v~~Vi~yy~~fl~rfPti~~LA~-------------A~~~evl~~W~gLGYysRArnL~~~A~~v~~~~~ 105 (342)
T COG1194 39 VSEIMLQQTQVATVIPYYERFLERFPTIKALAA-------------APEDEVLKAWEGLGYYSRARNLHKAAQEVVERHG 105 (342)
T ss_pred hHHHHhhhccHhhhhhhHHHHHHhCCCHHHHhc-------------CCHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcC
Confidence 3444455566777777888776532 22221 123456789999999999999999888888876
Q ss_pred hcCCCchh
Q 020453 292 TLKPEEAG 299 (326)
Q Consensus 292 ~~~p~~~~ 299 (326)
..-|++..
T Consensus 106 G~~P~~~~ 113 (342)
T COG1194 106 GEFPDDEE 113 (342)
T ss_pred CCCCCCHH
Confidence 44455543
No 391
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=22.39 E-value=2.8e+02 Score=19.41 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 205 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 242 (326)
Q Consensus 205 ~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~ 242 (326)
+...++..++-+..|....-.+++++..|++.+++.+.
T Consensus 12 fE~~l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~ 49 (81)
T COG1722 12 FEEALAELEEIVESLESGELPLEEALKEFERGMALYKE 49 (81)
T ss_pred HHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHH
Confidence 34445555555555555556777777777777776654
No 392
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.36 E-value=2.5e+02 Score=24.68 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=14.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 020453 264 VADVDRSIGNEDVAVDGFQEA 284 (326)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~ 284 (326)
++++|...|++++|.=-|++.
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHH
Confidence 567777777777776555544
No 393
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=22.33 E-value=2.5e+02 Score=28.83 Aligned_cols=28 Identities=18% Similarity=0.430 Sum_probs=18.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 264 VADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
+........+.+.|...++++++.+..+
T Consensus 402 if~~e~~~~dhe~~kneL~~a~ekld~m 429 (1265)
T KOG0976|consen 402 IFRLEQGKKDHEAAKNELQEALEKLDLM 429 (1265)
T ss_pred hhhhhhccchhHHHHHHHHHHHHHHHHH
Confidence 3344444456777777788888777665
No 394
>PRK00420 hypothetical protein; Validated
Probab=22.30 E-value=61 Score=24.32 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=17.8
Q ss_pred CcccccccccccCCCeecccCCcchHHhHhcCCCCCCCCcccc
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIE 65 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~CP~Cr~~~~ 65 (326)
.-.||+|.-.||.. .=|..| ||.|.....
T Consensus 23 ~~~CP~Cg~pLf~l----k~g~~~----------Cp~Cg~~~~ 51 (112)
T PRK00420 23 SKHCPVCGLPLFEL----KDGEVV----------CPVHGKVYI 51 (112)
T ss_pred cCCCCCCCCcceec----CCCceE----------CCCCCCeee
Confidence 46799998876541 222222 888887554
No 395
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.26 E-value=4.7e+02 Score=21.89 Aligned_cols=31 Identities=3% Similarity=0.036 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 240 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~ 240 (326)
.-..+.|+.++...+.++++...|..++...
T Consensus 94 ~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~ 124 (200)
T cd07639 94 LLVKEDLRGFRDARKEFERGAESLEAALQHN 124 (200)
T ss_pred HHHHhhhHHHHHHhhhHhhcchhHHHHHHHH
Confidence 3444556677777777788777777776543
No 396
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.20 E-value=4.7e+02 Score=21.90 Aligned_cols=32 Identities=9% Similarity=0.018 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 209 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 240 (326)
Q Consensus 209 i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~ 240 (326)
..-....|+.++.....++++...|..++...
T Consensus 95 ~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~ 126 (202)
T cd07606 95 AQFADTDLQEVKDARRRFDKASLDYEQARSKF 126 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777766777888888777776543
No 397
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=22.17 E-value=2.7e+02 Score=19.13 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=23.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453 221 YYGGDLQAARSYYVRSLNVRRDAVKRHSN 249 (326)
Q Consensus 221 ~~~~~~~~a~~~~~~sl~~~~~~~~~~~~ 249 (326)
...|+|++|+..|.++++........+++
T Consensus 17 D~~g~y~eAl~~Y~~aie~l~~~lk~e~d 45 (77)
T cd02683 17 DQEGRFQEALVCYQEGIDLLMQVLKGTKD 45 (77)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 55689999999999999988776666554
No 398
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=22.06 E-value=43 Score=25.81 Aligned_cols=13 Identities=31% Similarity=0.646 Sum_probs=10.2
Q ss_pred CcccccccccccC
Q 020453 23 PLSCMICQALLFE 35 (326)
Q Consensus 23 ~l~C~iC~~~l~~ 35 (326)
.-.||.|.-.||.
T Consensus 28 ~~hCp~Cg~PLF~ 40 (131)
T COG1645 28 AKHCPKCGTPLFR 40 (131)
T ss_pred HhhCcccCCccee
Confidence 3579999988776
No 399
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.75 E-value=36 Score=25.72 Aligned_cols=32 Identities=34% Similarity=0.747 Sum_probs=19.9
Q ss_pred CCccccccccc---ccC-CCeecccCCcchHHhHhc
Q 020453 22 GPLSCMICQAL---LFE-CSKCTPCSHVYCKACISR 53 (326)
Q Consensus 22 ~~l~C~iC~~~---l~~-~p~~l~C~h~fC~~Cl~~ 53 (326)
..-.|.+|... |+. .-+...|.|.+|..|-..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc
Confidence 55689999764 222 245567888888888653
No 400
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.74 E-value=5.5e+02 Score=25.26 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=16.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcC
Q 020453 198 LPMDDLEIIHTLSVSLNKIGDLKYYGG 224 (326)
Q Consensus 198 L~~~~~~~~~~i~~~~~~l~~l~~~~~ 224 (326)
|.+.-.++...+..+.+.|..+...+.
T Consensus 435 LPGlp~~y~~~~~~~~~~i~~l~~~L~ 461 (560)
T PF06160_consen 435 LPGLPEDYLDYFFDVSDEIEELSDELN 461 (560)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445566666666666766665554
No 401
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=21.53 E-value=36 Score=19.64 Aligned_cols=8 Identities=50% Similarity=0.928 Sum_probs=3.9
Q ss_pred cccccccc
Q 020453 25 SCMICQAL 32 (326)
Q Consensus 25 ~C~iC~~~ 32 (326)
.||-|.-.
T Consensus 4 ~Cp~C~~~ 11 (36)
T PF13717_consen 4 TCPNCQAK 11 (36)
T ss_pred ECCCCCCE
Confidence 45555544
No 402
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=21.46 E-value=1.5e+02 Score=29.88 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 259 VSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
.+.+.+...|...|+.++|++.|++..
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456777788888888888888888755
No 403
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=21.41 E-value=32 Score=17.69 Aligned_cols=6 Identities=50% Similarity=1.065 Sum_probs=2.4
Q ss_pred cccccc
Q 020453 26 CMICQA 31 (326)
Q Consensus 26 C~iC~~ 31 (326)
||-|..
T Consensus 2 Cp~CG~ 7 (23)
T PF13240_consen 2 CPNCGA 7 (23)
T ss_pred CcccCC
Confidence 344433
No 404
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=21.32 E-value=34 Score=19.61 Aligned_cols=26 Identities=23% Similarity=0.627 Sum_probs=11.1
Q ss_pred CCeecccCCcchHHhHhcCCCCCCCC
Q 020453 36 CSKCTPCSHVYCKACISRFKDCPLCG 61 (326)
Q Consensus 36 ~p~~l~C~h~fC~~Cl~~~~~CP~Cr 61 (326)
.|....|+..|--+-+...+.+|+|.
T Consensus 3 ~~~C~eC~~~f~dSyL~~~F~~~VCD 28 (34)
T PF01286_consen 3 YPKCDECGKPFMDSYLLNNFDLPVCD 28 (34)
T ss_dssp -EE-TTT--EES-SSCCCCTS-S--T
T ss_pred CchHhHhCCHHHHHHHHHhCCccccc
Confidence 35666777776666665555555443
No 405
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=21.10 E-value=2.9e+02 Score=27.73 Aligned_cols=104 Identities=19% Similarity=0.181 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 208 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 208 ~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
..-...-..++++..-++++.|+..|+++++.-=. ..-+++..-.+-|+..-...+++.|+...+.|...
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~----------~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK----------TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc----------chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 33445566788888889999999988888654211 11245555555555555556666666655555433
Q ss_pred HHH--h----hcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 288 LES--L----TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 288 ~~~--l----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
=.. + +.+|..+ .+.+ ++.+|.+.-++..++.-|+
T Consensus 455 P~~~~~~~yd~~~pvQ~-rlhr--SlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQA-RLHR--SLKIWSMYADLEESLGTFE 494 (835)
T ss_pred CCchhhhhhcCCCcHHH-HHHH--hHHHHHHHHHHHHHhccHH
Confidence 211 0 1122221 1121 3677777777777666554
No 406
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=21.09 E-value=4.8e+02 Score=22.83 Aligned_cols=37 Identities=27% Similarity=0.235 Sum_probs=21.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHH
Q 020453 265 ADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE 301 (326)
Q Consensus 265 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~ 301 (326)
.+.+..+.+|+.|.=.|.--..-++.+...|.++...
T Consensus 220 ~DTL~Ti~qyEsARiEyDayR~Dle~~~l~P~~~~t~ 256 (341)
T KOG3876|consen 220 EDTLMTIKQYESARIEYDAYRTDLEELTLGPRDALTK 256 (341)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHhcCCccccccc
Confidence 3555666667777655555555555555555554433
No 407
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=21.09 E-value=90 Score=33.53 Aligned_cols=59 Identities=20% Similarity=0.604 Sum_probs=39.7
Q ss_pred CcccccccccccCCCeecccCCcc-----hHHhHhcC-------CCCCCCCccccc-----ccccHHHHHHHHHHHh
Q 020453 23 PLSCMICQALLFECSKCTPCSHVY-----CKACISRF-------KDCPLCGADIEK-----IEADTTLQDVVDRFIE 82 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~f-----C~~Cl~~~-------~~CP~Cr~~~~~-----~~~n~~l~~~~~~~~~ 82 (326)
.+.||-|....+. .++-.||... |..|-... ..||.|...+.. +.....+...++.+..
T Consensus 667 ~rkCPkCG~~t~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~i~~~~~~~~A~~~~g~ 742 (1337)
T PRK14714 667 RRRCPSCGTETYE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTINVKEEYRSALENVGE 742 (1337)
T ss_pred EEECCCCCCcccc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceEEecHHHHHHHHHHHhCc
Confidence 4789999987444 5777888764 88887643 249999987763 4445555555555433
No 408
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.01 E-value=1.4e+02 Score=23.00 Aligned_cols=34 Identities=15% Similarity=0.011 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 244 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~ 244 (326)
.....+..+...+..+..++..|..+++..+.+.
T Consensus 17 ~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~ 50 (140)
T PRK03947 17 ALQAQIEALQQQLEELQASINELDTAKETLEELK 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334445555555555566666666665555443
No 409
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.89 E-value=2.5e+02 Score=23.75 Aligned_cols=34 Identities=29% Similarity=0.199 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
.+.++..-|.-+..-|+|++|...|++|+++...
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~ 127 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPS 127 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcc
Confidence 3445555565555567777777777777776533
No 410
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=20.83 E-value=4.1e+02 Score=20.65 Aligned_cols=97 Identities=11% Similarity=0.098 Sum_probs=0.0
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHH
Q 020453 129 RAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHT 208 (326)
Q Consensus 129 ~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~ 208 (326)
....+.+-..-+..+...++ .....|.+.+. ..-+.+|.+......+.+....++....+.+..
T Consensus 38 ~~~~~~~f~~~~~~~~~~L~----------~vV~eh~q~Fn------~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~ 101 (142)
T PF04048_consen 38 RAHRYQEFEELKKRIEKALQ----------EVVNEHYQGFN------SSIGSYSQILSSISESQERIRELKESLQEAKSL 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453 209 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 241 (326)
Q Consensus 209 i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~ 241 (326)
+......|..++....++.+.+..+.+.-++++
T Consensus 102 L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~ 134 (142)
T PF04048_consen 102 LGCRREELKELWQRSQEYKEMIEILDQIEELRQ 134 (142)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 411
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=20.82 E-value=51 Score=17.46 Aligned_cols=10 Identities=30% Similarity=1.092 Sum_probs=6.6
Q ss_pred CCCCCCcccc
Q 020453 56 DCPLCGADIE 65 (326)
Q Consensus 56 ~CP~Cr~~~~ 65 (326)
.||.|.+.+.
T Consensus 3 ~CPiC~~~v~ 12 (26)
T smart00734 3 QCPVCFREVP 12 (26)
T ss_pred cCCCCcCccc
Confidence 4777776654
No 412
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=20.80 E-value=6.8e+02 Score=23.20 Aligned_cols=42 Identities=24% Similarity=0.056 Sum_probs=32.1
Q ss_pred CCchhhhHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 250 VPSQVLDVAVSLAKVA-DVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 250 ~~~~~~~la~~l~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
...+++..+..+-+++ .-+...++..-|...++-+.+++..+
T Consensus 128 ~~dWllaEad~Ll~lA~rkL~l~~DV~TAv~lLk~aD~~La~~ 170 (391)
T COG2959 128 RKDWLLAEADFLLKLAGRKLVLDQDVTTAVALLKSADARLAAM 170 (391)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhc
Confidence 4567777777777776 45556688999999999998888775
No 413
>PF14353 CpXC: CpXC protein
Probab=20.61 E-value=51 Score=25.14 Aligned_cols=9 Identities=44% Similarity=1.339 Sum_probs=7.0
Q ss_pred CCCCCcccc
Q 020453 57 CPLCGADIE 65 (326)
Q Consensus 57 CP~Cr~~~~ 65 (326)
||.|...+.
T Consensus 41 CP~Cg~~~~ 49 (128)
T PF14353_consen 41 CPSCGHKFR 49 (128)
T ss_pred CCCCCCcee
Confidence 888887765
No 414
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=20.54 E-value=6e+02 Score=22.48 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLK 220 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~ 220 (326)
...+.+.+.+|.+|+
T Consensus 81 ~~~l~dRetEI~eLk 95 (305)
T PF15290_consen 81 ENRLHDRETEIDELK 95 (305)
T ss_pred HHHHHhhHHHHHHHH
Confidence 334444444555554
No 415
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=20.39 E-value=7.6e+02 Score=25.76 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=41.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcC---C---CC--CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 222 YGGDLQAARSYYVRSLNVRRDAVKRH---S---NV--PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 222 ~~~~~~~a~~~~~~sl~~~~~~~~~~---~---~~--~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
-+.++.+|++.|.+.+.......... + .+ ....-++-.-+..|.++-+. |+.++|.+.+++...+++++
T Consensus 497 Lm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~mmd~ie~la~~-G~~~~A~q~L~qlq~mmenm 573 (820)
T PF13779_consen 497 LMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRMMDRIEELARS-GRMDEARQLLEQLQQMMENM 573 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhc
Confidence 33455688888888776543322111 1 00 11122344444444444444 99999999999999999998
No 416
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=20.32 E-value=3.7e+02 Score=19.95 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=25.6
Q ss_pred hCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 197 KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 239 (326)
Q Consensus 197 ~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~ 239 (326)
.|.....+++..++...+.|+..+.+.+++.+-+..++.++..
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~ 48 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQS 48 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Confidence 4555566777888888888888888887776666665555543
No 417
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=20.14 E-value=4e+02 Score=23.24 Aligned_cols=65 Identities=22% Similarity=0.189 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHH
Q 020453 203 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAV 278 (326)
Q Consensus 203 ~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~ 278 (326)
..+...++.-+-.|+..+...+.+-.|+..|+.+++-... .. .....|-.+.+.+..+|..+.|.
T Consensus 160 ~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~----t~-------~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 160 VKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD----TS-------AVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc----cc-------chHHHHHHHHHHHHHhCChHHHH
Confidence 3445556666666777777778888888888877654322 11 12456777888999999866665
No 418
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=20.09 E-value=5.7e+02 Score=22.01 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=35.6
Q ss_pred hhhhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh
Q 020453 253 QVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 253 ~~~~la~~l~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~l 291 (326)
.+++-|..++.-|.+.+..| +.......|..|+-+++.|
T Consensus 160 LiYdrALemsr~AA~~El~g~~~~~ce~~Y~tA~~lLe~L 199 (238)
T PF12063_consen 160 LIYDRALEMSRTAAVDELFGENLEGCEQRYETAIWLLEAL 199 (238)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHhHHHHHHHHHHHHHHHH
Confidence 56778888899999999999 8999999999999999998
Done!