Query 020453
Match_columns 326
No_of_seqs 236 out of 2606
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 03:12:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.5 5.7E-14 2E-18 101.9 5.2 62 21-83 11-82 (92)
2 1wgm_A Ubiquitin conjugation f 99.4 3.5E-13 1.2E-17 98.4 7.6 62 22-84 21-89 (98)
3 1t1h_A Gspef-atpub14, armadill 99.4 6E-14 2E-18 98.5 2.8 62 21-83 6-74 (78)
4 2kr4_A Ubiquitin conjugation f 99.4 1.2E-13 4E-18 98.4 3.3 61 22-83 13-79 (85)
5 2kre_A Ubiquitin conjugation f 99.4 1.8E-13 6.3E-18 100.3 4.4 61 22-83 28-94 (100)
6 3fl2_A E3 ubiquitin-protein li 99.4 1E-13 3.4E-18 106.4 2.4 62 22-84 51-120 (124)
7 4ayc_A E3 ubiquitin-protein li 99.3 3.8E-13 1.3E-17 105.1 3.3 60 22-82 52-115 (138)
8 1jm7_B BARD1, BRCA1-associated 99.3 9.8E-13 3.3E-17 99.8 4.7 62 22-84 21-87 (117)
9 2y43_A E3 ubiquitin-protein li 99.3 8.2E-13 2.8E-17 97.1 2.7 62 22-84 21-89 (99)
10 2ckl_A Polycomb group ring fin 99.3 1.4E-12 4.8E-17 97.5 2.8 61 22-83 14-85 (108)
11 2egp_A Tripartite motif-contai 99.3 5E-13 1.7E-17 94.0 0.3 53 21-74 10-75 (79)
12 3l11_A E3 ubiquitin-protein li 99.3 4E-12 1.4E-16 96.1 5.0 63 20-83 12-88 (115)
13 1z6u_A NP95-like ring finger p 99.3 1.7E-12 5.9E-17 102.5 3.0 61 22-83 77-145 (150)
14 3lrq_A E3 ubiquitin-protein li 99.3 9E-13 3.1E-17 97.0 1.2 61 22-83 21-89 (100)
15 2yu4_A E3 SUMO-protein ligase 99.3 2.7E-12 9.3E-17 93.2 3.7 63 21-84 5-83 (94)
16 1bor_A Transcription factor PM 99.2 6.8E-12 2.3E-16 81.8 2.8 44 21-65 4-48 (56)
17 2csy_A Zinc finger protein 183 99.2 1.1E-11 3.8E-16 87.4 4.1 53 20-73 12-69 (81)
18 2f42_A STIP1 homology and U-bo 99.2 9.7E-12 3.3E-16 100.1 2.9 61 22-83 105-172 (179)
19 3hct_A TNF receptor-associated 99.2 9.5E-12 3.3E-16 94.4 2.6 67 13-80 6-81 (118)
20 2c2l_A CHIP, carboxy terminus 99.1 1.3E-11 4.5E-16 108.2 2.8 61 22-83 207-274 (281)
21 2ysl_A Tripartite motif-contai 99.1 5.9E-11 2E-15 81.9 5.2 44 21-65 18-68 (73)
22 2d8t_A Dactylidin, ring finger 99.1 4.6E-11 1.6E-15 81.9 4.2 45 20-65 12-60 (71)
23 3knv_A TNF receptor-associated 99.1 9E-12 3.1E-16 97.3 0.6 52 12-64 17-76 (141)
24 1jm7_A BRCA1, breast cancer ty 99.1 1.3E-11 4.3E-16 92.9 1.2 60 22-82 20-88 (112)
25 2yur_A Retinoblastoma-binding 99.1 1.5E-11 5.1E-16 85.1 1.0 43 22-65 14-63 (74)
26 2ckl_B Ubiquitin ligase protei 99.1 2.2E-11 7.6E-16 98.1 2.0 61 22-83 53-122 (165)
27 2djb_A Polycomb group ring fin 99.1 3.5E-11 1.2E-15 82.8 2.5 43 22-65 14-61 (72)
28 2ecw_A Tripartite motif-contai 99.1 2.5E-11 8.6E-16 86.4 1.7 52 22-74 18-81 (85)
29 2ecy_A TNF receptor-associated 99.1 2.7E-11 9.3E-16 81.9 1.7 44 21-65 13-61 (66)
30 2ecv_A Tripartite motif-contai 99.1 2.2E-11 7.4E-16 86.7 1.0 53 21-74 17-81 (85)
31 3n71_A Histone lysine methyltr 99.1 8.5E-10 2.9E-14 104.0 11.8 137 176-324 320-459 (490)
32 4ic3_A E3 ubiquitin-protein li 99.0 5.9E-11 2E-15 82.0 2.2 44 22-66 23-67 (74)
33 3htk_C E3 SUMO-protein ligase 99.0 9.8E-11 3.4E-15 98.8 3.7 61 22-83 180-251 (267)
34 2ysj_A Tripartite motif-contai 99.0 1.9E-10 6.5E-15 76.8 4.0 39 21-60 18-63 (63)
35 2ct2_A Tripartite motif protei 99.0 6.9E-11 2.4E-15 84.7 1.6 44 21-65 13-67 (88)
36 1g25_A CDK-activating kinase a 99.0 1E-10 3.5E-15 78.7 2.0 43 22-65 2-54 (65)
37 1e4u_A Transcriptional repress 99.0 2.5E-10 8.6E-15 79.4 3.6 46 21-66 9-62 (78)
38 3hcs_A TNF receptor-associated 99.0 1.1E-10 3.7E-15 94.5 2.0 68 13-81 6-82 (170)
39 1rmd_A RAG1; V(D)J recombinati 99.0 8.5E-11 2.9E-15 88.9 1.1 57 22-79 22-86 (116)
40 2ecj_A Tripartite motif-contai 99.0 3.8E-10 1.3E-14 74.0 3.8 38 22-60 14-58 (58)
41 2yho_A E3 ubiquitin-protein li 98.9 1.7E-10 5.7E-15 80.7 1.3 44 22-66 17-61 (79)
42 3ng2_A RNF4, snurf, ring finge 98.9 8.7E-11 3E-15 80.5 -0.2 45 20-65 7-62 (71)
43 2ea6_A Ring finger protein 4; 98.9 1.5E-10 5.3E-15 78.8 0.8 45 20-65 12-67 (69)
44 2ecg_A Baculoviral IAP repeat- 98.9 2.7E-10 9.3E-15 78.9 1.8 44 22-66 24-68 (75)
45 3qww_A SET and MYND domain-con 98.9 9.9E-09 3.4E-13 95.2 12.2 116 179-304 312-430 (433)
46 1iym_A EL5; ring-H2 finger, ub 98.9 1E-09 3.5E-14 71.0 3.4 43 22-65 4-54 (55)
47 1x4j_A Ring finger protein 38; 98.9 4.9E-10 1.7E-14 77.7 1.4 51 14-65 14-71 (75)
48 2xeu_A Ring finger protein 4; 98.8 2.3E-10 7.8E-15 76.7 -0.5 43 22-65 2-55 (64)
49 1chc_A Equine herpes virus-1 r 98.8 4.6E-10 1.6E-14 76.2 0.7 44 22-66 4-52 (68)
50 3qww_A SET and MYND domain-con 98.8 4.4E-09 1.5E-13 97.5 7.1 118 201-326 287-408 (433)
51 2ect_A Ring finger protein 126 98.8 1.4E-09 4.7E-14 75.9 2.7 45 20-65 12-63 (78)
52 2ecm_A Ring finger and CHY zin 98.8 8.2E-10 2.8E-14 71.5 0.9 44 22-65 4-54 (55)
53 2ecn_A Ring finger protein 141 98.8 1E-09 3.4E-14 74.9 1.3 42 22-65 14-59 (70)
54 2kiz_A E3 ubiquitin-protein li 98.8 2E-09 6.7E-14 73.2 2.7 46 21-66 12-63 (69)
55 3n71_A Histone lysine methyltr 98.8 9.4E-09 3.2E-13 96.8 7.9 116 203-326 300-419 (490)
56 2l0b_A E3 ubiquitin-protein li 98.8 1.2E-09 3.9E-14 78.7 0.9 43 22-65 39-88 (91)
57 2ea5_A Cell growth regulator w 98.8 5.4E-09 1.8E-13 70.6 4.0 46 20-66 12-58 (68)
58 3qwp_A SET and MYND domain-con 98.7 4.8E-08 1.6E-12 90.6 11.1 118 177-304 299-419 (429)
59 4ap4_A E3 ubiquitin ligase RNF 98.7 1.7E-09 5.8E-14 83.6 0.2 45 21-66 5-60 (133)
60 2ep4_A Ring finger protein 24; 98.7 5.2E-09 1.8E-13 72.2 1.8 44 22-66 14-64 (74)
61 2ecl_A Ring-box protein 2; RNF 98.6 1.7E-08 5.8E-13 70.8 3.9 47 18-65 10-75 (81)
62 1v87_A Deltex protein 2; ring- 98.6 7.4E-09 2.5E-13 77.8 1.7 44 22-66 24-94 (114)
63 3t6p_A Baculoviral IAP repeat- 98.6 1.2E-08 4.1E-13 91.1 2.6 44 22-66 294-338 (345)
64 1wim_A KIAA0161 protein; ring 98.6 5.6E-09 1.9E-13 75.6 -0.2 60 22-82 4-83 (94)
65 3edt_B KLC 2, kinesin light ch 98.6 1.5E-06 5E-11 74.2 14.5 150 165-325 43-194 (283)
66 2vje_A E3 ubiquitin-protein li 98.5 9.7E-09 3.3E-13 68.5 0.1 45 21-66 6-57 (64)
67 3ulq_A Response regulator aspa 98.5 2.1E-06 7.3E-11 77.7 15.7 179 126-326 112-290 (383)
68 4ap4_A E3 ubiquitin ligase RNF 98.5 1.5E-08 5E-13 78.3 0.7 57 8-65 52-124 (133)
69 2vje_B MDM4 protein; proto-onc 98.5 1.9E-08 6.5E-13 66.9 0.7 44 22-66 6-56 (63)
70 3qwp_A SET and MYND domain-con 98.5 7.8E-08 2.7E-12 89.1 4.2 109 209-326 287-397 (429)
71 3q15_A PSP28, response regulat 98.5 3.8E-06 1.3E-10 76.0 15.1 177 126-325 110-286 (378)
72 2y1n_A E3 ubiquitin-protein li 98.4 4E-08 1.4E-12 88.3 1.2 42 23-65 332-378 (389)
73 2ifu_A Gamma-SNAP; membrane fu 98.4 5.6E-06 1.9E-10 72.9 14.6 174 128-325 47-220 (307)
74 3u3w_A Transcriptional activat 98.4 8.4E-06 2.9E-10 71.1 15.4 141 172-326 122-263 (293)
75 3ro3_A PINS homolog, G-protein 98.4 5.6E-06 1.9E-10 64.1 12.5 144 167-325 11-154 (164)
76 3nf1_A KLC 1, kinesin light ch 98.4 1.3E-05 4.6E-10 69.3 16.1 184 125-325 35-220 (311)
77 1qqe_A Vesicular transport pro 98.4 2.6E-06 8.8E-11 74.5 11.1 137 174-325 46-183 (292)
78 2ifu_A Gamma-SNAP; membrane fu 98.4 1.9E-06 6.4E-11 76.0 10.3 137 173-325 44-180 (307)
79 3gw4_A Uncharacterized protein 98.4 6.5E-06 2.2E-10 66.9 12.7 146 166-325 27-172 (203)
80 4gcn_A Protein STI-1; structur 98.3 1.8E-06 6E-11 65.7 8.0 103 207-325 5-108 (127)
81 3dpl_R Ring-box protein 1; ubi 98.3 2.6E-07 8.8E-12 68.0 2.3 44 21-65 35-100 (106)
82 1qqe_A Vesicular transport pro 98.3 1.9E-05 6.3E-10 68.9 14.5 172 128-325 48-224 (292)
83 4gyw_A UDP-N-acetylglucosamine 98.3 2.6E-06 8.9E-11 84.0 9.7 132 160-324 4-135 (723)
84 3edt_B KLC 2, kinesin light ch 98.3 2.8E-06 9.5E-11 72.4 8.8 138 177-325 13-152 (283)
85 3ulq_A Response regulator aspa 98.2 6.4E-06 2.2E-10 74.5 10.3 140 173-326 111-250 (383)
86 3q15_A PSP28, response regulat 98.2 7.7E-06 2.6E-10 73.9 10.7 140 173-326 109-248 (378)
87 4a1s_A PINS, partner of inscut 98.2 3E-05 1E-09 70.3 14.6 175 126-325 57-248 (411)
88 2hr2_A Hypothetical protein; a 98.2 8.1E-06 2.8E-10 64.5 8.9 113 210-326 11-128 (159)
89 2qfc_A PLCR protein; TPR, HTH, 98.2 3.1E-05 1.1E-09 67.4 13.6 140 172-325 122-262 (293)
90 3sf4_A G-protein-signaling mod 98.1 4.9E-05 1.7E-09 68.3 15.0 175 126-325 18-212 (406)
91 3nf1_A KLC 1, kinesin light ch 98.1 2.1E-05 7.2E-10 68.0 11.7 150 165-325 27-178 (311)
92 2bay_A PRE-mRNA splicing facto 98.1 5E-07 1.7E-11 59.4 0.4 42 23-65 3-49 (61)
93 4gco_A Protein STI-1; structur 98.1 1.6E-05 5.6E-10 60.2 8.7 99 205-325 8-106 (126)
94 4gyw_A UDP-N-acetylglucosamine 98.1 1.8E-05 6.1E-10 78.1 11.0 152 126-324 18-169 (723)
95 3sf4_A G-protein-signaling mod 98.1 0.00014 4.6E-09 65.4 16.1 135 167-316 229-363 (406)
96 4a1s_A PINS, partner of inscut 98.0 0.0001 3.4E-09 66.8 14.6 144 167-325 225-368 (411)
97 3ro2_A PINS homolog, G-protein 98.0 5.6E-05 1.9E-09 65.6 12.0 175 126-325 14-208 (338)
98 4g1t_A Interferon-induced prot 98.0 1.7E-05 5.7E-10 73.5 9.0 109 210-325 51-163 (472)
99 3ro2_A PINS homolog, G-protein 98.0 0.00019 6.4E-09 62.3 14.7 176 126-324 52-247 (338)
100 3ro3_A PINS homolog, G-protein 98.0 0.0011 3.9E-08 50.5 17.7 144 126-290 18-161 (164)
101 4a0k_B E3 ubiquitin-protein li 97.9 1.4E-06 4.9E-11 64.9 0.4 43 22-65 47-111 (117)
102 3gw4_A Uncharacterized protein 97.9 0.00056 1.9E-08 55.1 16.0 146 126-291 35-180 (203)
103 3rkv_A Putative peptidylprolyl 97.9 8.4E-05 2.9E-09 58.4 10.6 109 209-325 10-122 (162)
104 3vtx_A MAMA; tetratricopeptide 97.9 0.00012 4.2E-09 58.4 11.5 153 126-325 14-166 (184)
105 4i17_A Hypothetical protein; T 97.9 0.00019 6.6E-09 59.5 12.7 152 126-316 16-169 (228)
106 4b4t_Q 26S proteasome regulato 97.8 0.00021 7.1E-09 65.2 13.2 176 126-323 13-198 (434)
107 4gcn_A Protein STI-1; structur 97.8 0.00037 1.3E-08 52.6 12.0 102 168-287 11-112 (127)
108 3u3w_A Transcriptional activat 97.8 0.00087 3E-08 58.1 16.0 114 167-292 157-271 (293)
109 2pl2_A Hypothetical conserved 97.7 0.00043 1.5E-08 57.3 12.6 92 212-326 120-211 (217)
110 2d8s_A Cellular modulator of i 97.7 1.5E-05 5.2E-10 55.3 2.5 44 22-65 14-69 (80)
111 2qfc_A PLCR protein; TPR, HTH, 97.6 0.0016 5.5E-08 56.4 15.0 113 167-291 157-270 (293)
112 4eqf_A PEX5-related protein; a 97.6 0.0011 3.6E-08 59.0 14.0 166 126-324 74-271 (365)
113 3uq3_A Heat shock protein STI1 97.6 0.0035 1.2E-07 52.1 16.3 136 126-287 14-168 (258)
114 1hz4_A MALT regulatory protein 97.6 0.0036 1.2E-07 55.8 17.0 145 126-290 23-167 (373)
115 3gyz_A Chaperone protein IPGC; 97.5 0.00036 1.2E-08 54.6 8.6 94 210-325 36-129 (151)
116 3upv_A Heat shock protein STI1 97.5 0.00037 1.3E-08 51.9 8.2 92 211-324 5-96 (126)
117 4eqf_A PEX5-related protein; a 97.5 0.0019 6.5E-08 57.3 14.0 92 212-325 215-306 (365)
118 1p5q_A FKBP52, FK506-binding p 97.5 0.0033 1.1E-07 55.8 15.4 136 162-319 144-283 (336)
119 4g1t_A Interferon-induced prot 97.5 0.00042 1.4E-08 63.9 9.8 112 168-287 54-167 (472)
120 2hr2_A Hypothetical protein; a 97.5 0.0077 2.6E-07 47.3 15.5 116 168-290 14-134 (159)
121 4gco_A Protein STI-1; structur 97.4 0.0024 8.2E-08 47.9 11.9 111 163-304 11-121 (126)
122 3vk6_A E3 ubiquitin-protein li 97.4 2.1E-05 7.2E-10 55.7 0.1 42 25-66 3-49 (101)
123 3hym_B Cell division cycle pro 97.4 0.0015 5.1E-08 56.6 12.1 103 211-326 194-296 (330)
124 4ga2_A E3 SUMO-protein ligase 97.4 0.0012 4E-08 51.3 9.8 83 212-316 33-115 (150)
125 3sz7_A HSC70 cochaperone (SGT) 97.4 0.00057 1.9E-08 53.6 7.9 29 259-287 80-108 (164)
126 1fch_A Peroxisomal targeting s 97.4 0.0039 1.3E-07 55.1 14.2 93 211-325 218-310 (368)
127 3upv_A Heat shock protein STI1 97.3 0.0089 3E-07 44.1 13.8 112 168-304 7-118 (126)
128 3gyz_A Chaperone protein IPGC; 97.3 0.006 2.1E-07 47.5 13.1 103 161-288 32-134 (151)
129 1ihg_A Cyclophilin 40; ppiase 97.3 0.00076 2.6E-08 61.0 8.8 110 208-325 221-332 (370)
130 1p5q_A FKBP52, FK506-binding p 97.3 0.00039 1.3E-08 61.9 6.4 112 206-325 143-255 (336)
131 2fbn_A 70 kDa peptidylprolyl i 97.2 0.014 4.9E-07 46.9 15.3 133 166-320 39-176 (198)
132 2vgx_A Chaperone SYCD; alterna 97.2 0.0018 6E-08 50.2 8.9 61 214-288 59-119 (148)
133 3uq3_A Heat shock protein STI1 97.2 0.0035 1.2E-07 52.1 11.5 137 167-324 7-163 (258)
134 3rkv_A Putative peptidylprolyl 97.2 0.011 3.6E-07 46.0 13.4 130 168-319 14-151 (162)
135 4i17_A Hypothetical protein; T 97.2 0.0095 3.3E-07 49.0 13.7 149 126-304 51-220 (228)
136 2fbn_A 70 kDa peptidylprolyl i 97.1 0.00074 2.5E-08 54.7 6.2 108 206-325 34-147 (198)
137 2vq2_A PILW, putative fimbrial 97.1 0.011 3.8E-07 47.8 13.5 124 126-286 17-141 (225)
138 3q49_B STIP1 homology and U bo 97.1 0.0018 6E-08 48.6 7.8 60 213-286 12-71 (137)
139 1kt0_A FKBP51, 51 kDa FK506-bi 97.1 0.0074 2.5E-07 56.0 13.5 135 162-318 265-403 (457)
140 2l6j_A TPR repeat-containing p 97.1 0.003 1E-07 45.3 8.7 93 211-325 5-103 (111)
141 3vtx_A MAMA; tetratricopeptide 97.1 0.0027 9.3E-08 50.3 9.2 99 211-325 6-132 (184)
142 1w3b_A UDP-N-acetylglucosamine 97.1 0.007 2.4E-07 54.1 12.8 59 214-286 173-231 (388)
143 2jun_A Midline-1; B-BOX, TRIM, 97.0 0.00022 7.6E-09 51.7 1.9 34 22-55 2-38 (101)
144 1hz4_A MALT regulatory protein 97.0 0.011 3.7E-07 52.6 13.4 141 168-324 17-159 (373)
145 4abn_A Tetratricopeptide repea 97.0 0.0011 3.7E-08 61.9 7.0 152 126-325 111-283 (474)
146 1w3b_A UDP-N-acetylglucosamine 97.0 0.0039 1.3E-07 55.8 10.4 58 260-325 137-194 (388)
147 3hym_B Cell division cycle pro 97.0 0.0034 1.2E-07 54.3 9.7 95 215-325 164-261 (330)
148 1hxi_A PEX5, peroxisome target 97.0 0.0032 1.1E-07 46.8 8.2 89 215-325 22-110 (121)
149 1kt0_A FKBP51, 51 kDa FK506-bi 97.0 0.0011 3.6E-08 61.8 6.6 113 206-326 264-377 (457)
150 1fch_A Peroxisomal targeting s 97.0 0.011 3.9E-07 52.0 13.1 130 167-323 219-353 (368)
151 2ho1_A Type 4 fimbrial biogene 96.9 0.0098 3.4E-07 49.4 11.9 16 126-141 46-61 (252)
152 3ieg_A DNAJ homolog subfamily 96.9 0.019 6.6E-07 49.9 14.3 136 168-325 191-331 (359)
153 1elr_A TPR2A-domain of HOP; HO 96.9 0.0016 5.5E-08 47.9 6.1 100 210-325 4-104 (131)
154 2pl2_A Hypothetical conserved 96.9 0.021 7.3E-07 46.8 13.7 152 126-325 14-176 (217)
155 2xcb_A PCRH, regulatory protei 96.9 0.0047 1.6E-07 47.0 8.9 61 214-288 56-116 (142)
156 2q7f_A YRRB protein; TPR, prot 96.9 0.011 3.7E-07 48.6 11.9 151 126-323 66-216 (243)
157 1ihg_A Cyclophilin 40; ppiase 96.9 0.032 1.1E-06 50.1 15.7 131 167-319 225-360 (370)
158 4b4t_Q 26S proteasome regulato 96.9 0.0012 4E-08 60.2 6.1 139 177-325 16-160 (434)
159 2vyi_A SGTA protein; chaperone 96.9 0.0051 1.7E-07 45.0 8.6 59 214-286 50-108 (131)
160 2vsy_A XCC0866; transferase, g 96.9 0.0034 1.1E-07 59.8 9.5 127 166-325 24-153 (568)
161 3qky_A Outer membrane assembly 96.9 0.012 4.1E-07 49.6 12.0 168 126-324 24-219 (261)
162 4ga2_A E3 SUMO-protein ligase 96.9 0.00014 4.7E-09 56.7 -0.3 89 215-325 2-90 (150)
163 1a17_A Serine/threonine protei 96.9 0.0045 1.5E-07 47.7 8.5 94 211-324 48-141 (166)
164 2xpi_A Anaphase-promoting comp 96.9 0.013 4.4E-07 55.5 13.4 97 212-324 443-540 (597)
165 2y4t_A DNAJ homolog subfamily 96.9 0.029 9.9E-07 50.9 15.3 133 170-324 216-353 (450)
166 1a17_A Serine/threonine protei 96.9 0.024 8.3E-07 43.4 12.8 101 166-289 48-148 (166)
167 2ct0_A Non-SMC element 1 homol 96.9 0.0009 3.1E-08 45.3 3.7 47 19-65 11-63 (74)
168 3k9i_A BH0479 protein; putativ 96.8 0.00066 2.3E-08 50.0 3.1 57 259-323 28-84 (117)
169 4abn_A Tetratricopeptide repea 96.8 0.0044 1.5E-07 57.8 9.4 154 126-324 146-316 (474)
170 2lni_A Stress-induced-phosphop 96.8 0.0023 7.8E-08 47.3 6.0 24 214-237 20-43 (133)
171 1xnf_A Lipoprotein NLPI; TPR, 96.8 0.0043 1.5E-07 52.2 8.4 27 212-238 45-71 (275)
172 3as5_A MAMA; tetratricopeptide 96.8 0.011 3.7E-07 46.1 10.3 125 167-324 44-168 (186)
173 3sz7_A HSC70 cochaperone (SGT) 96.8 0.027 9.3E-07 43.7 12.5 59 170-239 16-74 (164)
174 1elw_A TPR1-domain of HOP; HOP 96.8 0.0033 1.1E-07 45.1 6.5 59 214-286 8-66 (118)
175 2c2l_A CHIP, carboxy terminus 96.7 0.0018 6.2E-08 55.9 5.8 89 213-323 7-95 (281)
176 2vgx_A Chaperone SYCD; alterna 96.7 0.043 1.5E-06 42.1 13.2 62 212-287 23-84 (148)
177 2h6f_A Protein farnesyltransfe 96.7 0.0081 2.8E-07 54.4 10.1 67 162-239 94-161 (382)
178 1hh8_A P67PHOX, NCF-2, neutrop 96.7 0.0014 4.8E-08 53.3 4.7 123 173-325 14-146 (213)
179 3fp2_A TPR repeat-containing p 96.7 0.0089 3E-07 55.7 10.8 128 171-325 350-487 (537)
180 2xpi_A Anaphase-promoting comp 96.7 0.012 4.1E-07 55.8 11.8 99 212-325 477-575 (597)
181 3u4t_A TPR repeat-containing p 96.7 0.0029 1E-07 53.3 6.6 124 126-285 12-135 (272)
182 2vq2_A PILW, putative fimbrial 96.7 0.013 4.3E-07 47.4 10.4 127 167-324 10-137 (225)
183 2dba_A Smooth muscle cell asso 96.7 0.0033 1.1E-07 47.5 6.3 94 212-324 30-123 (148)
184 1zu2_A Mitochondrial import re 96.7 0.0039 1.3E-07 49.0 6.6 88 230-326 15-117 (158)
185 2pzi_A Probable serine/threoni 96.7 0.008 2.7E-07 58.8 10.4 62 167-239 435-496 (681)
186 1wao_1 Serine/threonine protei 96.7 0.012 4E-07 55.0 11.1 115 177-324 18-134 (477)
187 3u4t_A TPR repeat-containing p 96.7 0.0077 2.6E-07 50.6 9.1 127 170-326 8-134 (272)
188 3cv0_A Peroxisome targeting si 96.6 0.021 7.1E-07 49.1 12.0 134 166-326 173-312 (327)
189 3cv0_A Peroxisome targeting si 96.6 0.045 1.6E-06 46.9 14.1 88 126-238 30-117 (327)
190 2xcb_A PCRH, regulatory protei 96.6 0.12 4.1E-06 38.9 15.0 62 212-287 20-81 (142)
191 2y4t_A DNAJ homolog subfamily 96.6 0.026 9E-07 51.2 12.9 100 169-286 98-205 (450)
192 2ho1_A Type 4 fimbrial biogene 96.6 0.011 3.8E-07 49.1 9.5 60 257-324 140-199 (252)
193 3ma5_A Tetratricopeptide repea 96.6 0.031 1.1E-06 39.6 10.5 65 212-290 9-73 (100)
194 3urz_A Uncharacterized protein 96.6 0.0097 3.3E-07 48.6 8.8 98 216-325 10-113 (208)
195 1na3_A Designed protein CTPR2; 96.5 0.027 9.1E-07 38.4 9.8 74 211-304 10-83 (91)
196 1na0_A Designed protein CTPR3; 96.5 0.011 3.6E-07 42.8 7.8 24 215-238 14-37 (125)
197 3urz_A Uncharacterized protein 96.5 0.19 6.5E-06 40.6 16.2 60 214-287 58-117 (208)
198 1elr_A TPR2A-domain of HOP; HO 96.5 0.11 3.6E-06 37.6 13.3 100 170-287 9-108 (131)
199 2vyi_A SGTA protein; chaperone 96.4 0.15 5.2E-06 36.7 14.0 64 210-287 12-75 (131)
200 1wao_1 Serine/threonine protei 96.4 0.00098 3.4E-08 62.4 1.9 92 213-326 9-100 (477)
201 2if4_A ATFKBP42; FKBP-like, al 96.4 0.006 2E-07 54.2 7.0 110 209-326 178-290 (338)
202 2lni_A Stress-induced-phosphop 96.4 0.048 1.6E-06 39.8 11.1 98 165-287 16-113 (133)
203 2kck_A TPR repeat; tetratricop 96.4 0.0024 8.3E-08 45.5 3.6 88 214-323 10-100 (112)
204 2v5f_A Prolyl 4-hydroxylase su 96.3 0.024 8.3E-07 40.7 8.6 77 215-304 10-86 (104)
205 2fo7_A Synthetic consensus TPR 96.3 0.046 1.6E-06 39.7 10.3 118 173-323 9-126 (136)
206 3fp2_A TPR repeat-containing p 96.3 0.03 1E-06 52.1 11.3 92 212-325 312-403 (537)
207 2q7f_A YRRB protein; TPR, prot 96.2 0.019 6.7E-07 47.1 8.8 125 166-323 58-182 (243)
208 2gw1_A Mitochondrial precursor 96.1 0.017 5.8E-07 53.3 8.8 97 212-324 374-473 (514)
209 1ouv_A Conserved hypothetical 96.1 0.039 1.3E-06 46.6 10.4 88 212-325 76-175 (273)
210 3ieg_A DNAJ homolog subfamily 96.0 0.099 3.4E-06 45.2 13.0 132 126-286 12-148 (359)
211 1ouv_A Conserved hypothetical 96.0 0.078 2.7E-06 44.7 11.9 90 210-325 110-211 (273)
212 3k9i_A BH0479 protein; putativ 96.0 0.047 1.6E-06 39.7 9.2 65 210-288 27-91 (117)
213 1hh8_A P67PHOX, NCF-2, neutrop 96.0 0.014 4.7E-07 47.3 6.8 88 213-325 9-96 (213)
214 2xev_A YBGF; tetratricopeptide 96.0 0.016 5.6E-07 42.5 6.7 60 215-285 44-103 (129)
215 3q49_B STIP1 homology and U bo 96.0 0.15 5E-06 37.6 12.0 98 168-290 12-109 (137)
216 3as5_A MAMA; tetratricopeptide 95.9 0.025 8.7E-07 43.9 7.6 92 211-324 43-134 (186)
217 2e2e_A Formate-dependent nitri 95.8 0.023 7.9E-07 44.5 7.0 27 213-239 47-73 (177)
218 2vsy_A XCC0866; transferase, g 95.8 0.013 4.5E-07 55.6 6.5 93 211-325 24-116 (568)
219 2kat_A Uncharacterized protein 95.8 0.067 2.3E-06 38.5 9.1 65 212-290 21-85 (115)
220 2dba_A Smooth muscle cell asso 95.6 0.14 4.8E-06 38.0 10.7 97 169-287 32-128 (148)
221 3qou_A Protein YBBN; thioredox 95.6 0.069 2.4E-06 45.9 9.9 129 171-325 123-280 (287)
222 2gw1_A Mitochondrial precursor 95.5 0.041 1.4E-06 50.6 8.7 92 210-324 6-97 (514)
223 2if4_A ATFKBP42; FKBP-like, al 95.5 0.065 2.2E-06 47.4 9.7 107 167-287 181-293 (338)
224 2xev_A YBGF; tetratricopeptide 95.5 0.35 1.2E-05 35.0 12.4 63 214-287 6-68 (129)
225 2fo7_A Synthetic consensus TPR 95.5 0.036 1.2E-06 40.3 6.6 61 213-287 4-64 (136)
226 3mkr_A Coatomer subunit epsilo 95.4 0.19 6.4E-06 43.3 12.1 63 222-304 178-240 (291)
227 1elw_A TPR1-domain of HOP; HOP 95.4 0.23 7.9E-06 34.9 10.9 91 171-286 10-100 (118)
228 1na0_A Designed protein CTPR3; 95.3 0.47 1.6E-05 33.6 13.4 104 170-304 14-117 (125)
229 2h6f_A Protein farnesyltransfe 95.3 0.042 1.4E-06 49.7 7.8 66 207-286 94-160 (382)
230 1xnf_A Lipoprotein NLPI; TPR, 95.3 0.3 1E-05 40.6 12.7 98 165-287 43-140 (275)
231 3k1l_B Fancl; UBC, ring, RWD, 95.2 0.0041 1.4E-07 54.5 0.6 43 22-65 307-372 (381)
232 3qou_A Protein YBBN; thioredox 95.2 0.035 1.2E-06 47.8 6.6 97 213-325 120-244 (287)
233 2csv_A Tripartite motif protei 94.9 0.0011 3.6E-08 44.8 -3.2 42 159-200 19-69 (72)
234 2kc7_A BFR218_protein; tetratr 94.9 0.11 3.6E-06 36.2 7.4 58 216-287 6-64 (99)
235 3qky_A Outer membrane assembly 94.8 0.13 4.3E-06 43.1 8.9 98 212-325 17-122 (261)
236 1hxi_A PEX5, peroxisome target 94.7 0.13 4.6E-06 37.7 7.7 91 172-287 24-114 (121)
237 2pzi_A Probable serine/threoni 94.6 0.055 1.9E-06 52.8 7.0 99 212-326 435-560 (681)
238 2kck_A TPR repeat; tetratricop 94.6 0.054 1.9E-06 38.0 5.2 92 171-285 12-104 (112)
239 2l6j_A TPR repeat-containing p 94.4 0.032 1.1E-06 39.5 3.7 60 258-325 4-63 (111)
240 1vyx_A ORF K3, K3RING; zinc-bi 94.4 0.013 4.3E-07 37.9 1.2 43 22-65 5-58 (60)
241 2e2e_A Formate-dependent nitri 94.2 0.57 1.9E-05 36.2 11.0 97 166-287 45-144 (177)
242 2kat_A Uncharacterized protein 94.1 0.12 4E-06 37.2 6.2 60 258-325 19-78 (115)
243 3ma5_A Tetratricopeptide repea 94.1 0.045 1.5E-06 38.7 3.7 60 258-325 7-66 (100)
244 2r5s_A Uncharacterized protein 93.9 0.05 1.7E-06 42.8 4.1 54 215-282 11-64 (176)
245 2r5s_A Uncharacterized protein 93.7 0.096 3.3E-06 41.1 5.4 59 259-325 109-169 (176)
246 1na3_A Designed protein CTPR2; 93.2 0.094 3.2E-06 35.5 4.1 61 257-325 8-68 (91)
247 1zu2_A Mitochondrial import re 93.1 0.77 2.6E-05 35.7 9.5 78 212-302 38-129 (158)
248 2yhc_A BAMD, UPF0169 lipoprote 93.0 0.47 1.6E-05 38.7 8.8 64 213-287 7-70 (225)
249 3mkr_A Coatomer subunit epsilo 92.4 0.33 1.1E-05 41.7 7.3 94 212-325 132-225 (291)
250 3rjv_A Putative SEL1 repeat pr 92.4 0.14 4.8E-06 41.6 4.7 56 212-284 20-79 (212)
251 3m62_A Ubiquitin conjugation f 92.3 0.083 2.9E-06 52.7 3.7 62 22-84 890-958 (968)
252 2v5f_A Prolyl 4-hydroxylase su 91.7 0.1 3.4E-06 37.4 2.7 62 262-325 9-71 (104)
253 2yhc_A BAMD, UPF0169 lipoprote 91.0 2.1 7.1E-05 34.7 10.6 62 211-283 148-209 (225)
254 3rjv_A Putative SEL1 repeat pr 90.3 0.54 1.8E-05 38.1 6.2 90 167-286 20-117 (212)
255 2kc7_A BFR218_protein; tetratr 90.0 0.21 7.2E-06 34.5 3.0 54 264-325 6-60 (99)
256 1xi4_A Clathrin heavy chain; a 89.5 1.1 3.7E-05 47.1 8.7 58 212-288 1107-1164(1630)
257 1klx_A Cysteine rich protein B 88.3 2.5 8.5E-05 31.5 8.3 61 211-287 58-126 (138)
258 2jne_A Hypothetical protein YF 88.2 0.058 2E-06 37.7 -1.0 48 13-66 23-73 (101)
259 3ffl_A Anaphase-promoting comp 88.1 5.3 0.00018 31.1 10.0 65 222-291 32-96 (167)
260 2ffw_A Midline-1; B-BOX, ring 87.9 0.0032 1.1E-07 43.1 -7.6 31 105-151 28-65 (78)
261 2d8u_A Ubiquitin ligase TRIM63 87.4 0.0018 6E-08 42.6 -8.9 42 159-200 9-61 (64)
262 2ko5_A Ring finger protein Z; 86.9 1.3 4.4E-05 30.7 5.1 42 22-65 27-72 (99)
263 2ond_A Cleavage stimulation fa 86.9 10 0.00034 32.2 12.4 27 260-286 101-127 (308)
264 3ffl_A Anaphase-promoting comp 86.6 3.3 0.00011 32.3 8.0 102 177-280 32-144 (167)
265 2yvr_A Transcription intermedi 86.4 0.0083 2.8E-07 37.1 -5.7 33 159-191 7-49 (50)
266 1klx_A Cysteine rich protein B 85.1 0.83 2.9E-05 34.2 3.9 55 216-286 31-89 (138)
267 2did_A Tripartite motif protei 83.3 0.0063 2.2E-07 38.2 -7.4 32 159-190 9-50 (53)
268 2dja_A Midline-2; tripartite m 83.1 0.0021 7E-08 44.8 -10.8 46 159-204 19-75 (84)
269 2w2u_A Hypothetical P60 katani 83.0 6.3 0.00021 26.8 7.3 36 256-291 17-52 (83)
270 3i2d_A E3 SUMO-protein ligase 82.7 0.73 2.5E-05 40.9 3.0 58 23-80 249-316 (371)
271 3txn_A 26S proteasome regulato 82.4 1.6 5.5E-05 39.4 5.2 72 212-291 101-172 (394)
272 2rpa_A Katanin P60 ATPase-cont 81.7 3.9 0.00013 27.5 5.6 50 263-314 17-66 (78)
273 3nw0_A Non-structural maintena 81.6 0.69 2.4E-05 38.7 2.3 44 22-65 179-228 (238)
274 2xm6_A Protein corresponding t 81.1 2.8 9.7E-05 38.4 6.7 27 212-238 77-107 (490)
275 3bee_A Putative YFRE protein; 80.9 11 0.00038 25.8 8.8 47 226-286 25-71 (93)
276 4fo9_A E3 SUMO-protein ligase 80.2 1 3.5E-05 39.8 3.0 57 23-79 215-281 (360)
277 2v6y_A AAA family ATPase, P60 79.1 11 0.00038 25.5 7.4 36 256-291 9-44 (83)
278 2yrg_A Tripartite motif-contai 77.5 0.014 4.9E-07 37.4 -7.3 32 159-190 15-56 (59)
279 4f3v_A ESX-1 secretion system 75.1 14 0.00047 31.6 8.6 96 171-287 141-237 (282)
280 2xm6_A Protein corresponding t 74.7 12 0.00041 34.1 8.9 59 214-288 367-433 (490)
281 2ond_A Cleavage stimulation fa 74.6 5.2 0.00018 34.0 6.0 12 227-238 33-44 (308)
282 4f3v_A ESX-1 secretion system 74.1 2.5 8.5E-05 36.2 3.7 93 214-324 139-232 (282)
283 2cpt_A SKD1 protein, vacuolar 72.3 13 0.00043 27.1 6.6 38 254-291 14-51 (117)
284 1wfd_A Hypothetical protein 15 71.0 13 0.00046 25.7 6.3 38 254-291 11-48 (93)
285 1pc2_A Mitochondria fission pr 70.5 12 0.00041 28.7 6.5 30 258-287 71-100 (152)
286 1xi4_A Clathrin heavy chain; a 70.2 19 0.00065 38.1 9.6 52 214-287 1199-1250(1630)
287 4a5x_A MITD1, MIT domain-conta 69.8 16 0.00053 25.0 6.3 40 257-296 15-55 (86)
288 3ly7_A Transcriptional activat 67.9 26 0.0009 31.1 8.9 58 215-287 282-339 (372)
289 2egm_A Tripartite motif-contai 66.4 0.072 2.5E-06 33.8 -5.8 28 159-186 19-56 (57)
290 1fre_A Nuclear factor XNF7; zi 65.9 0.037 1.3E-06 32.6 -6.9 27 160-186 5-41 (42)
291 2kmz_A Tumor necrosis factor r 64.3 8.6 0.00029 22.9 3.4 39 3-50 2-40 (53)
292 2v6x_A Vacuolar protein sortin 64.3 20 0.00067 24.2 6.0 38 254-291 9-46 (85)
293 1vh6_A Flagellar protein FLIS; 63.7 14 0.00047 28.1 5.5 51 264-317 39-91 (145)
294 2jmo_A Parkin; IBR, E3 ligase, 62.6 2.2 7.5E-05 28.9 0.8 39 23-62 25-75 (80)
295 2jrp_A Putative cytoplasmic pr 60.7 1.7 5.7E-05 29.5 -0.2 37 24-65 3-42 (81)
296 2ooe_A Cleavage stimulation fa 60.5 85 0.0029 28.6 11.6 59 170-238 326-384 (530)
297 2gmg_A Hypothetical protein PF 59.9 3.3 0.00011 29.5 1.3 31 34-65 65-95 (105)
298 3ddt_A E3 ubiquitin-protein li 58.9 0.16 5.6E-06 30.7 -5.0 29 159-187 7-46 (48)
299 3iqc_A FLIS, flagellar protein 58.2 31 0.001 25.6 6.5 51 265-317 43-96 (131)
300 3e4b_A ALGK; tetratricopeptide 58.2 13 0.00043 33.8 5.3 27 212-238 178-207 (452)
301 1orj_A Flagellar protein FLIS; 57.9 43 0.0015 24.8 7.2 51 265-317 36-93 (130)
302 3e4b_A ALGK; tetratricopeptide 57.7 7.4 0.00025 35.4 3.7 24 214-237 252-278 (452)
303 2ooe_A Cleavage stimulation fa 57.3 55 0.0019 29.9 9.7 27 260-286 323-349 (530)
304 1b89_A Protein (clathrin heavy 54.8 6.9 0.00024 35.8 2.8 54 212-287 124-177 (449)
305 2cs3_A Protein C14ORF4, MY039 54.5 13 0.00044 24.9 3.3 34 21-55 13-50 (93)
306 1weo_A Cellulose synthase, cat 52.8 4.7 0.00016 27.6 1.0 42 22-65 15-69 (93)
307 2lbm_A Transcriptional regulat 49.6 8.5 0.00029 29.1 2.1 39 23-62 63-116 (142)
308 2cup_A Skeletal muscle LIM-pro 49.6 13 0.00044 25.8 3.1 44 22-65 32-77 (101)
309 3mjh_B Early endosome antigen 49.4 2 7E-05 23.8 -1.0 11 22-32 4-14 (34)
310 1deq_A Fibrinogen (alpha chain 48.5 69 0.0024 28.2 7.9 11 280-290 180-190 (390)
311 2ct7_A Ring finger protein 31; 47.7 4.4 0.00015 27.7 0.3 29 26-54 28-61 (86)
312 1vp7_A Exodeoxyribonuclease VI 45.8 58 0.002 22.9 5.8 41 203-243 30-70 (100)
313 2lri_C Autoimmune regulator; Z 45.1 35 0.0012 21.9 4.3 42 22-64 11-60 (66)
314 1o9d_A 14-3-3-like protein C; 45.0 92 0.0031 26.0 8.0 60 227-291 152-215 (260)
315 1b89_A Protein (clathrin heavy 42.9 57 0.0019 29.8 6.9 72 212-286 150-235 (449)
316 1zbd_B Rabphilin-3A; G protein 41.6 8.5 0.00029 28.8 1.0 32 21-52 53-88 (134)
317 1pc2_A Mitochondria fission pr 41.5 12 0.0004 28.7 1.8 41 282-324 52-95 (152)
318 2xqn_T Testin, TESS; metal-bin 40.7 12 0.00041 27.3 1.8 44 22-65 29-74 (126)
319 1wd2_A Ariadne-1 protein homol 40.4 7.5 0.00026 24.6 0.5 14 42-55 32-45 (60)
320 3mkq_A Coatomer beta'-subunit; 39.3 2.6E+02 0.0089 26.6 11.7 26 212-237 683-708 (814)
321 2o35_A Hypothetical protein DU 37.6 6 0.00021 27.6 -0.3 11 45-55 42-52 (105)
322 3fyb_A Protein of unknown func 37.6 6.1 0.00021 27.6 -0.3 11 45-55 41-51 (104)
323 3ql9_A Transcriptional regulat 36.9 11 0.00037 28.1 0.9 38 24-62 58-110 (129)
324 1deq_A Fibrinogen (alpha chain 36.2 2.3E+02 0.0077 25.0 10.1 49 197-245 78-126 (390)
325 1wfp_A Zinc finger (AN1-like) 33.7 79 0.0027 20.8 4.6 30 20-49 22-51 (74)
326 4b4t_P 26S proteasome regulato 33.1 1.2E+02 0.004 27.5 7.5 71 210-288 137-207 (445)
327 3u64_A Protein TP_0956; tetrat 32.8 2E+02 0.007 24.5 8.4 62 212-286 201-268 (301)
328 3oja_A Leucine-rich immune mol 31.2 1E+02 0.0034 28.1 6.8 13 163-175 337-349 (487)
329 2d8v_A Zinc finger FYVE domain 30.2 19 0.00066 23.1 1.2 31 22-54 7-38 (67)
330 4ayb_P DNA-directed RNA polyme 29.1 16 0.00055 21.7 0.6 27 39-65 6-34 (48)
331 1x4l_A Skeletal muscle LIM-pro 28.9 36 0.0012 21.7 2.5 34 22-55 34-67 (72)
332 3iqu_A 14-3-3 protein sigma; s 28.8 73 0.0025 26.2 4.8 54 227-285 150-203 (236)
333 2co8_A NEDD9 interacting prote 28.5 81 0.0028 20.7 4.3 52 4-65 2-53 (82)
334 2d8z_A Four and A half LIM dom 28.3 31 0.0011 21.8 2.1 34 22-55 30-63 (70)
335 2kn0_A FN14; tweak, TNF recept 28.2 14 0.00047 23.1 0.2 26 7-32 2-27 (66)
336 1wil_A KIAA1045 protein; ring 28.2 32 0.0011 23.3 2.0 30 22-53 14-46 (89)
337 2zet_C Melanophilin; complex, 27.8 22 0.00075 27.2 1.4 42 22-63 67-117 (153)
338 1wff_A Riken cDNA 2810002D23 p 27.4 1.1E+02 0.0039 20.6 4.7 29 21-49 23-52 (85)
339 2dar_A PDZ and LIM domain prot 26.9 33 0.0011 23.1 2.1 38 23-65 25-62 (90)
340 1joc_A EEA1, early endosomal a 26.7 27 0.00091 25.7 1.6 32 22-54 68-103 (125)
341 1x4u_A Zinc finger, FYVE domai 26.6 42 0.0014 22.5 2.5 31 22-53 13-47 (84)
342 1nzn_A CGI-135 protein, fissio 26.4 1.9E+02 0.0065 21.1 6.4 46 235-285 56-101 (126)
343 1x68_A FHL5 protein; four-and- 26.3 29 0.00099 22.5 1.6 34 23-56 35-68 (76)
344 2l5g_B Putative uncharacterize 26.1 58 0.002 18.7 2.5 19 205-223 14-32 (42)
345 3bee_A Putative YFRE protein; 25.9 85 0.0029 21.1 4.1 27 212-238 45-71 (93)
346 2jvx_A NF-kappa-B essential mo 25.0 10 0.00036 19.9 -0.6 11 23-33 3-13 (28)
347 2wb7_A PT26-6P; extra chromoso 24.6 2.1E+02 0.0072 26.3 7.3 20 226-245 448-467 (526)
348 1y02_A CARP2, FYVE-ring finger 24.5 27 0.00091 25.5 1.2 32 22-54 18-53 (120)
349 3ghg_A Fibrinogen alpha chain; 24.3 1.5E+02 0.0051 27.4 6.2 15 277-291 174-188 (562)
350 3ghg_A Fibrinogen alpha chain; 24.3 35 0.0012 31.5 2.2 13 306-318 174-186 (562)
351 3mv2_B Coatomer subunit epsilo 23.8 1.2E+02 0.0043 25.9 5.6 59 214-284 104-162 (310)
352 3t7l_A Zinc finger FYVE domain 23.6 30 0.001 23.7 1.3 32 22-54 19-54 (90)
353 3o36_A Transcription intermedi 23.4 34 0.0012 26.8 1.8 40 24-64 5-52 (184)
354 1y8m_A FIS1; mitochondria, unk 23.2 2.4E+02 0.0082 21.1 7.2 51 235-297 60-110 (144)
355 3u64_A Protein TP_0956; tetrat 23.0 2.7E+02 0.0092 23.8 7.4 31 258-288 199-234 (301)
356 1wyh_A SLIM 2, skeletal muscle 23.0 34 0.0012 21.7 1.5 32 23-54 33-64 (72)
357 1vfy_A Phosphatidylinositol-3- 22.9 33 0.0011 22.4 1.3 27 25-52 13-43 (73)
358 2d8x_A Protein pinch; LIM doma 22.6 34 0.0011 21.7 1.4 29 24-52 32-60 (70)
359 1x4k_A Skeletal muscle LIM-pro 22.3 37 0.0013 21.6 1.5 31 24-54 34-64 (72)
360 3o48_A Mitochondria fission 1 22.3 2.3E+02 0.0079 20.9 6.0 51 235-297 61-111 (134)
361 3lqh_A Histone-lysine N-methyl 22.2 66 0.0023 25.3 3.2 13 54-66 54-66 (183)
362 1z2q_A LM5-1; membrane protein 22.2 38 0.0013 22.8 1.6 31 22-53 20-54 (84)
363 3u5n_A E3 ubiquitin-protein li 21.6 27 0.00093 28.0 0.9 41 23-64 7-55 (207)
364 2ro1_A Transcription intermedi 21.5 46 0.0016 26.3 2.2 38 25-63 4-49 (189)
365 2w2u_A Hypothetical P60 katani 21.5 1.9E+02 0.0064 19.3 8.8 29 221-249 30-58 (83)
366 2iyb_E Testin, TESS, TES; LIM 21.2 49 0.0017 20.6 1.9 32 22-53 31-63 (65)
367 2pk7_A Uncharacterized protein 20.9 36 0.0012 22.1 1.2 32 21-65 6-37 (69)
368 1x64_A Alpha-actinin-2 associa 20.9 1.8E+02 0.006 19.2 4.9 39 22-65 24-62 (89)
369 2jr6_A UPF0434 protein NMA0874 20.8 34 0.0012 22.1 1.0 33 20-65 5-37 (68)
370 2yw8_A RUN and FYVE domain-con 20.7 41 0.0014 22.5 1.5 32 22-54 18-53 (82)
371 2dl1_A Spartin; SPG20, MIT, st 20.5 2.4E+02 0.0082 20.3 5.6 21 271-291 35-55 (116)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.45 E-value=5.7e-14 Score=101.93 Aligned_cols=62 Identities=27% Similarity=0.666 Sum_probs=55.1
Q ss_pred cCCcccccccccccCCCeecc-cCCcchHHhHhcCC------CCCCCCcccc---cccccHHHHHHHHHHHhc
Q 020453 21 IGPLSCMICQALLFECSKCTP-CSHVYCKACISRFK------DCPLCGADIE---KIEADTTLQDVVDRFIEG 83 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p~~l~-C~h~fC~~Cl~~~~------~CP~Cr~~~~---~~~~n~~l~~~~~~~~~~ 83 (326)
.+.++|+||+++ +.+|++++ |||+||..||..|+ .||.||..+. .+.+|..+.++++.+...
T Consensus 11 ~~~~~C~IC~~~-~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~ 82 (92)
T 3ztg_A 11 PDELLCLICKDI-MTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNE 82 (92)
T ss_dssp CTTTEETTTTEE-CSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHH
T ss_pred CcCCCCCCCChh-hcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHH
Confidence 378999999999 57799999 99999999999885 4999999974 589999999999998764
No 2
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.42 E-value=3.5e-13 Score=98.44 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=56.4
Q ss_pred CCcccccccccccCCCeecccC-CcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHHHHhcc
Q 020453 22 GPLSCMICQALLFECSKCTPCS-HVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDRFIEGH 84 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~-h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~~ 84 (326)
++|.||||+++ +.+||+++|| |+||+.||..||. ||.|+..+. .+.+|..|+++++.+....
T Consensus 21 ~~~~CpI~~~~-m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 21 DEFLDPIMSTL-MCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp TTTBCTTTCSB-CSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred HhcCCcCcccc-ccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence 68999999999 5779999999 9999999999985 999999987 5889999999999987654
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.41 E-value=6e-14 Score=98.53 Aligned_cols=62 Identities=16% Similarity=0.349 Sum_probs=54.9
Q ss_pred cCCcccccccccccCCCeecccCCcchHHhHhcCCC-----CCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453 21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIE--KIEADTTLQDVVDRFIEG 83 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~ 83 (326)
.+.+.||||+++ +.+|++++|||+||+.||..|+. ||.||..+. .+.+|..+.++++.+...
T Consensus 6 ~~~~~C~IC~~~-~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~ 74 (78)
T 1t1h_A 6 PEYFRCPISLEL-MKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCES 74 (78)
T ss_dssp SSSSSCTTTSCC-CSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHH
T ss_pred cccCCCCCcccc-ccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHH
Confidence 478999999999 57799999999999999998863 999999986 488899999999988764
No 4
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.39 E-value=1.2e-13 Score=98.39 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=55.5
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDRFIEG 83 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~ 83 (326)
++|.||||+++ +.+|++++|||+||+.||..||. ||.|+..+. .+.+|..++++++.+...
T Consensus 13 ~~~~CpI~~~~-m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 13 DEFRDPLMDTL-MTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMRE 79 (85)
T ss_dssp TTTBCTTTCSB-CSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred hheECcccCch-hcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHHH
Confidence 68999999999 57799999999999999999973 999999887 588999999999998764
No 5
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.39 E-value=1.8e-13 Score=100.29 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=56.0
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDRFIEG 83 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~ 83 (326)
++|.||||+++ +.+|++++|||+||+.||..||. ||.|+..+. .+.+|..++++++.+...
T Consensus 28 ~~~~CpI~~~~-m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 28 DEFRDPLMDTL-MTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 94 (100)
T ss_dssp TTTBCTTTCSB-CSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHT
T ss_pred HhhCCcCccCc-ccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHHH
Confidence 68999999999 57799999999999999999985 999999987 589999999999998764
No 6
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.38 E-value=1e-13 Score=106.45 Aligned_cols=62 Identities=31% Similarity=0.712 Sum_probs=55.2
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc---ccccHHHHHHHHHHHhcc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIEGH 84 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~---~~~n~~l~~~~~~~~~~~ 84 (326)
+.++|+||++. +.+|++++|||+||..||..|+ .||.||..+.. +.+|..+.++++.+....
T Consensus 51 ~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 51 ETFQCICCQEL-VFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY 120 (124)
T ss_dssp HHTBCTTTSSB-CSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred cCCCCCcCChH-HcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence 56899999999 5679999999999999999886 49999999974 889999999999987754
No 7
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.33 E-value=3.8e-13 Score=105.10 Aligned_cols=60 Identities=27% Similarity=0.783 Sum_probs=50.9
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccccccccHHHHHHHHHHHh
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDRFIE 82 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~~~~n~~l~~~~~~~~~ 82 (326)
++++|+||++. +.+|++++|||+||..||..|+. ||.||..+.....|..+.++++.+..
T Consensus 52 ~~~~C~iC~~~-~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~~ 115 (138)
T 4ayc_A 52 NELQCIICSEY-FIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVN 115 (138)
T ss_dssp HHSBCTTTCSB-CSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHHHHHT
T ss_pred ccCCCcccCcc-cCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHHHHHH
Confidence 46789999999 56799999999999999999974 99999999876677777777776654
No 8
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=9.8e-13 Score=99.77 Aligned_cols=62 Identities=21% Similarity=0.604 Sum_probs=55.3
Q ss_pred CCcccccccccccCCCeec-ccCCcchHHhHhcCCC--CCCCCcccc--cccccHHHHHHHHHHHhcc
Q 020453 22 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFKD--CPLCGADIE--KIEADTTLQDVVDRFIEGH 84 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~~--CP~Cr~~~~--~~~~n~~l~~~~~~~~~~~ 84 (326)
+.+.|+||+++ +.+|+++ +|||+||..||..|+. ||.||..+. .+.+|..+.++++.+....
T Consensus 21 ~~~~C~IC~~~-~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 21 KLLRCSRCTNI-LREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HTTSCSSSCSC-CSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hCCCCCCCChH-hhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 68999999999 5779999 9999999999999975 999999986 5889999999999886643
No 9
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.29 E-value=8.2e-13 Score=97.13 Aligned_cols=62 Identities=29% Similarity=0.708 Sum_probs=54.7
Q ss_pred CCcccccccccccCCCeec-ccCCcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHHHHhcc
Q 020453 22 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDRFIEGH 84 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~~ 84 (326)
+.+.|+||++. +.+|+++ +|||+||..||..|+. ||.||..+. .+.+|..+.++++.+....
T Consensus 21 ~~~~C~IC~~~-~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 21 DLLRCGICFEY-FNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHTBCTTTCSB-CSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCcccCChh-hCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 57899999999 5679988 8999999999999863 999999988 4889999999999987653
No 10
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.27 E-value=1.4e-12 Score=97.48 Aligned_cols=61 Identities=36% Similarity=0.886 Sum_probs=53.5
Q ss_pred CCcccccccccccCCCeec-ccCCcchHHhHhcCC----CCCCCCcccc------cccccHHHHHHHHHHHhc
Q 020453 22 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIE------KIEADTTLQDVVDRFIEG 83 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~----~CP~Cr~~~~------~~~~n~~l~~~~~~~~~~ 83 (326)
+.+.|+||++. +.+|+++ +|||+||..||..|+ .||.||..+. .+..|..+.++++.+...
T Consensus 14 ~~~~C~IC~~~-~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~ 85 (108)
T 2ckl_A 14 PHLMCVLCGGY-FIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG 85 (108)
T ss_dssp GGTBCTTTSSB-CSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT
T ss_pred CcCCCccCChH-HhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhh
Confidence 68899999999 5679998 999999999999985 3999999987 367899999999988664
No 11
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.26 E-value=5e-13 Score=93.97 Aligned_cols=53 Identities=30% Similarity=0.760 Sum_probs=43.9
Q ss_pred cCCcccccccccccCCCeecccCCcchHHhHhcCC-----------CCCCCCcccc--cccccHHHH
Q 020453 21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----------DCPLCGADIE--KIEADTTLQ 74 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----------~CP~Cr~~~~--~~~~n~~l~ 74 (326)
.+.+.|+||++. +.+|++++|||+||..|+..|+ .||.||..+. .+..|..+.
T Consensus 10 ~~~~~C~IC~~~-~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~ 75 (79)
T 2egp_A 10 QEEVTCPICLEL-LTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLA 75 (79)
T ss_dssp CCCCEETTTTEE-CSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSC
T ss_pred ccCCCCcCCCcc-cCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHH
Confidence 368999999999 5779999999999999999875 3999999986 355565543
No 12
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.26 E-value=4e-12 Score=96.11 Aligned_cols=63 Identities=21% Similarity=0.605 Sum_probs=53.7
Q ss_pred ccCCcccccccccccCCCeecccCCcchHHhHhcCCC-----CCCCCcccc---------cccccHHHHHHHHHHHhc
Q 020453 20 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIE---------KIEADTTLQDVVDRFIEG 83 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~---------~~~~n~~l~~~~~~~~~~ 83 (326)
..+++.|+||++. +.+|++++|||+||..||..|+. ||.||..+. .+..|..+.+++.++...
T Consensus 12 ~~~~~~C~iC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 12 SLSECQCGICMEI-LVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR 88 (115)
T ss_dssp CHHHHBCTTTCSB-CSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred CCCCCCCccCCcc-cCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence 3468999999999 46699999999999999999973 999999875 366789999999887654
No 13
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.25 E-value=1.7e-12 Score=102.55 Aligned_cols=61 Identities=33% Similarity=0.686 Sum_probs=54.3
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCcccc---cccccHHHHHHHHHHHhc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIE---KIEADTTLQDVVDRFIEG 83 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~---~~~~n~~l~~~~~~~~~~ 83 (326)
+.+.|+||++. +.+|++++|||+||..||..|+ .||.||..+. .+.+|..+.++++.+...
T Consensus 77 ~~~~C~IC~~~-~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 77 QSFMCVCCQEL-VYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHTBCTTTSSB-CSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred cCCEeecCChh-hcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 46899999999 5779999999999999999885 4999999998 478999999999988764
No 14
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.25 E-value=9e-13 Score=96.99 Aligned_cols=61 Identities=23% Similarity=0.569 Sum_probs=52.4
Q ss_pred CCcccccccccccCCCee-cccCCcchHHhHhcCC-----CCCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453 22 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFK-----DCPLCGADIE--KIEADTTLQDVVDRFIEG 83 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~-l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~--~~~~n~~l~~~~~~~~~~ 83 (326)
+.+.|+||++. +.+|++ ++|||+||..||..|+ .||.||..+. .+..|..+.++++.+...
T Consensus 21 ~~~~C~IC~~~-~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 21 EVFRCFICMEK-LRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHTBCTTTCSB-CSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCccCCcc-ccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 67999999999 567999 9999999999999884 4999999987 477888888888876553
No 15
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=2.7e-12 Score=93.17 Aligned_cols=63 Identities=21% Similarity=0.444 Sum_probs=54.2
Q ss_pred cCCcccccccccccCCCeecc-cCCcchHHhHhcCC----------CCCC--CCcc-c--ccccccHHHHHHHHHHHhcc
Q 020453 21 IGPLSCMICQALLFECSKCTP-CSHVYCKACISRFK----------DCPL--CGAD-I--EKIEADTTLQDVVDRFIEGH 84 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p~~l~-C~h~fC~~Cl~~~~----------~CP~--Cr~~-~--~~~~~n~~l~~~~~~~~~~~ 84 (326)
.++|.||||+++ +.+||+++ |||+||+.||..|| .||. |+.. + ..+.+|..|+++++.+....
T Consensus 5 ~~~~~CPI~~~~-~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 5 SSGFTCPITKEE-MKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp SSCCBCTTTCSB-CSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CcEeECcCcCch-hcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 367999999999 57799996 99999999999885 4999 9855 4 36999999999999987653
No 16
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=6.8e-12 Score=81.78 Aligned_cols=44 Identities=36% Similarity=0.844 Sum_probs=38.8
Q ss_pred cCCcccccccccccCCCeecccCCcchHHhHhcCC-CCCCCCcccc
Q 020453 21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-DCPLCGADIE 65 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-~CP~Cr~~~~ 65 (326)
.+.++|+||++. +.+|++++|||+||..|+..+. .||.||..+.
T Consensus 4 ~~~~~C~IC~~~-~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAE-AKCPKLLPCLHTLCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSS-CBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred ccCCCceEeCCc-cCCeEEcCCCCcccHHHHccCCCCCCcCCcEee
Confidence 467899999999 5779999999999999998864 5999999876
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=87.42 Aligned_cols=53 Identities=25% Similarity=0.662 Sum_probs=44.1
Q ss_pred ccCCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCccccc-ccccHHH
Q 020453 20 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEK-IEADTTL 73 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~-~~~n~~l 73 (326)
..+.+.|+||++. +.+|++++|||+||..||..|+. ||.||..+.. +.+|..+
T Consensus 12 ~~~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 69 (81)
T 2csy_A 12 EEIPFRCFICRQA-FQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKEL 69 (81)
T ss_dssp CCCCSBCSSSCSB-CCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHH
T ss_pred CCCCCCCcCCCch-hcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHH
Confidence 3367899999999 57799999999999999999864 9999999874 5666443
No 18
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.16 E-value=9.7e-12 Score=100.13 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=55.0
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCCC-----CCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIE--KIEADTTLQDVVDRFIEG 83 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~ 83 (326)
+.|.||||+++ +.+||+++|||+||+.||..|+. ||.|+..+. .+.+|..|+++++.+...
T Consensus 105 ~~f~CPI~~el-m~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 105 DYLCGKISFEL-MREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQE 172 (179)
T ss_dssp GGGBCTTTCSB-CSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred HhhcccCcccc-CCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHH
Confidence 68999999999 57799999999999999999862 999999987 489999999999988754
No 19
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.16 E-value=9.5e-12 Score=94.42 Aligned_cols=67 Identities=27% Similarity=0.514 Sum_probs=52.7
Q ss_pred CCCCCCc--ccCCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc--ccccHHHHHHHHHH
Q 020453 13 GYDAQSF--KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRF 80 (326)
Q Consensus 13 ~~~~~~~--~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~--~~~n~~l~~~~~~~ 80 (326)
||+..+. ..+.+.|+||++. +.+|++++|||+||..||..|+ .||.||..+.. +.+|..+.+++..+
T Consensus 6 g~~~~~~~~~~~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 6 GYDVEFDPPLESKYECPICLMA-LREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CBCSCBSSCCCGGGBCTTTCSB-CSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCChhhccCCCCCCCCCcCChh-hcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 5555532 2367899999999 5679999999999999999885 59999999884 55777777766643
No 20
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.13 E-value=1.3e-11 Score=108.17 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=55.1
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCCC-----CCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIE--KIEADTTLQDVVDRFIEG 83 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~ 83 (326)
+.+.||||+++ +.+||+++|||+||+.||..|+. ||.|+.++. .+.+|..++++++.+...
T Consensus 207 ~~~~c~i~~~~-~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 207 DYLCGKISFEL-MREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISE 274 (281)
T ss_dssp STTBCTTTCSB-CSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTT
T ss_pred cccCCcCcCCH-hcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHH
Confidence 68999999999 57799999999999999998862 999999988 588999999999998754
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=5.9e-11 Score=81.89 Aligned_cols=44 Identities=27% Similarity=0.810 Sum_probs=39.3
Q ss_pred cCCcccccccccccCCCeecccCCcchHHhHhcCC-------CCCCCCcccc
Q 020453 21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIE 65 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-------~CP~Cr~~~~ 65 (326)
.+.+.|+||++. +.+|+.++|||+||..||..|+ .||.||..+.
T Consensus 18 ~~~~~C~IC~~~-~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDI-LQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSB-CSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcc-cCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 367899999999 5779999999999999999987 3999998875
No 22
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.6e-11 Score=81.94 Aligned_cols=45 Identities=29% Similarity=0.705 Sum_probs=39.8
Q ss_pred ccCCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453 20 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
..+.+.|+||++. +.+|+.++|||.||..||..|+. ||.||..+.
T Consensus 12 ~~~~~~C~IC~~~-~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQT-CVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSB-CSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcc-cCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 4477899999999 57799999999999999999863 999999876
No 23
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.11 E-value=9e-12 Score=97.32 Aligned_cols=52 Identities=21% Similarity=0.551 Sum_probs=42.9
Q ss_pred CCCCCCCc---ccCCcccccccccccCCCeecccCCcchHHhHhcCCC-----CCCCCccc
Q 020453 12 FGYDAQSF---KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADI 64 (326)
Q Consensus 12 ~~~~~~~~---~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~ 64 (326)
.||+...+ ..+.+.|+||+++| .+|++++|||+||..||..|+. ||.||..+
T Consensus 17 ~g~~~~~~~~~l~~~~~C~IC~~~~-~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 17 PGFSKTLLGTKLEAKYLCSACRNVL-RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CSBCGGGTGGGCCGGGBCTTTCSBC-SSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcchhhhhccCCcCcCCCCCChhh-cCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 46666555 23689999999994 6699999999999999999863 99999864
No 24
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=1.3e-11 Score=92.86 Aligned_cols=60 Identities=32% Similarity=0.822 Sum_probs=49.4
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC-------CCCCCCcccc--cccccHHHHHHHHHHHh
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIE--KIEADTTLQDVVDRFIE 82 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-------~CP~Cr~~~~--~~~~n~~l~~~~~~~~~ 82 (326)
+.+.|+||++. +.+|++++|||+||..||..|+ .||.||..+. .+..|..+.++++.+..
T Consensus 20 ~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 20 KILECPICLEL-IKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHTSCSSSCCC-CSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred CCCCCcccChh-hcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 46799999999 5779999999999999998885 4999999887 46667666666666654
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.09 E-value=1.5e-11 Score=85.13 Aligned_cols=43 Identities=30% Similarity=0.828 Sum_probs=38.4
Q ss_pred CCcccccccccccCCCeecc-cCCcchHHhHhcCC------CCCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTP-CSHVYCKACISRFK------DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~-C~h~fC~~Cl~~~~------~CP~Cr~~~~ 65 (326)
+.+.|+||++. +.+|++++ |||+||..||..|+ .||.||..+.
T Consensus 14 ~~~~C~IC~~~-~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDI-MTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCC-CTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChH-HhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 67899999999 57799999 99999999999885 4999999754
No 26
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.09 E-value=2.2e-11 Score=98.10 Aligned_cols=61 Identities=23% Similarity=0.663 Sum_probs=51.7
Q ss_pred CCcccccccccccCCCeec-ccCCcchHHhHhcCC-----CCCCCCcccc---cccccHHHHHHHHHHHhc
Q 020453 22 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK-----DCPLCGADIE---KIEADTTLQDVVDRFIEG 83 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~-----~CP~Cr~~~~---~~~~n~~l~~~~~~~~~~ 83 (326)
+.+.|+||++. +.+|+++ +|||+||..||..|+ .||.||..+. .+.+|..+.++++.+...
T Consensus 53 ~~~~C~IC~~~-~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 53 SELMCPICLDM-LKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp HHHBCTTTSSB-CSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred CCCCCcccChH-hhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 46799999999 4669987 999999999999985 2999999885 488999999999988653
No 27
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=3.5e-11 Score=82.79 Aligned_cols=43 Identities=30% Similarity=0.773 Sum_probs=38.4
Q ss_pred CCcccccccccccCCCeec-ccCCcchHHhHhcCC----CCCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~----~CP~Cr~~~~ 65 (326)
+.+.|+||++. +.+|+++ +|||+||..||..|+ .||.||..+.
T Consensus 14 ~~~~C~IC~~~-~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 14 PYILCSICKGY-LIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp GGGSCTTTSSC-CSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCChH-HHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 67899999999 4669997 999999999999886 4999999876
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.07 E-value=2.5e-11 Score=86.36 Aligned_cols=52 Identities=25% Similarity=0.742 Sum_probs=43.0
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC----------CCCCCCcccc--cccccHHHH
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----------DCPLCGADIE--KIEADTTLQ 74 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~----------~CP~Cr~~~~--~~~~n~~l~ 74 (326)
+.+.|+||++. +.+|++++|||+||..|+..|+ .||.||..+. .+.+|..+.
T Consensus 18 ~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecw_A 18 EEVTCPICLEL-LKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVA 81 (85)
T ss_dssp TTTSCTTTCSC-CSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCC
T ss_pred cCCCCcCCChh-hCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHH
Confidence 67899999999 5779999999999999998752 4999999887 355665543
No 29
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.7e-11 Score=81.85 Aligned_cols=44 Identities=25% Similarity=0.705 Sum_probs=39.0
Q ss_pred cCCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCcccc
Q 020453 21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIE 65 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~ 65 (326)
.+.+.|+||++. +.+|+.++|||+||..||..|+ .||.||..+.
T Consensus 13 ~~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLV-LCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCE-ESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CcCCCCCCCChH-hcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 367999999999 5779999999999999999886 3999998875
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.2e-11 Score=86.71 Aligned_cols=53 Identities=25% Similarity=0.716 Sum_probs=43.3
Q ss_pred cCCcccccccccccCCCeecccCCcchHHhHhcC----------CCCCCCCcccc--cccccHHHH
Q 020453 21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRF----------KDCPLCGADIE--KIEADTTLQ 74 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~----------~~CP~Cr~~~~--~~~~n~~l~ 74 (326)
.+.+.|+||++. +.+|+.++|||+||..|+..| ..||.||..+. .+.+|..+.
T Consensus 17 ~~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecv_A 17 KEEVTCPICLEL-LTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 81 (85)
T ss_dssp CCCCCCTTTCSC-CSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCC
T ss_pred cCCCCCCCCCcc-cCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHH
Confidence 367899999999 577999999999999999876 34999999887 355555443
No 31
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.06 E-value=8.5e-10 Score=103.95 Aligned_cols=137 Identities=13% Similarity=0.067 Sum_probs=115.6
Q ss_pred HHhCCchhHhhHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchh
Q 020453 176 RAMGDADAAVAYFADSVEFLMK-LPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV 254 (326)
Q Consensus 176 ~~~h~~H~~~~~~e~~~~~~~~-L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~ 254 (326)
...|++.++.++.+.++....+ |+..+.. +....++|+.++..+|+|++|..+|++++++.+.....+..
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~----~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp----- 390 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLY----VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA----- 390 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH-----
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH-----
Confidence 3567888999999988877655 5655554 56788999999999999999999999999999998887655
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 255 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 255 ~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
+++.++++||.+|..+|++++|+.+|++|++|++.. ..||..+.++..+ ...+..++.+.++..-|+
T Consensus 391 -~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l--~~~~~e~~~~~~ae~~~~ 459 (490)
T 3n71_A 391 -QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMR--MQTEMELRMFRQNEFMYH 459 (490)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999987 6678888888777 777777777777765554
No 32
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.04 E-value=5.9e-11 Score=82.04 Aligned_cols=44 Identities=30% Similarity=0.652 Sum_probs=40.0
Q ss_pred CCcccccccccccCCCeecccCCc-chHHhHhcCCCCCCCCccccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 66 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~-fC~~Cl~~~~~CP~Cr~~~~~ 66 (326)
+.+.|+||++. +.+|+.+||||. ||..|+..|..||.||..+..
T Consensus 23 ~~~~C~iC~~~-~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDR-NIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSS-BCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSE
T ss_pred cCCCCCCCCCC-CCCEEEcCCCChhHHHHhhhcCccCCCcCcCccC
Confidence 46899999999 577999999999 999999999889999998874
No 33
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.03 E-value=9.8e-11 Score=98.77 Aligned_cols=61 Identities=20% Similarity=0.382 Sum_probs=53.8
Q ss_pred CCcccccccccccCCCeec-ccCCcchHHhHhcCCC------CCC--CCcccc--cccccHHHHHHHHHHHhc
Q 020453 22 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFKD------CPL--CGADIE--KIEADTTLQDVVDRFIEG 83 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~~------CP~--Cr~~~~--~~~~n~~l~~~~~~~~~~ 83 (326)
.+++||||+++ +.+||+. .|||+||+.||..||. ||. |+..+. .+.+|..|.++++.....
T Consensus 180 ~el~CPIcl~~-f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 180 IELTCPITCKP-YEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp CCSBCTTTSSB-CSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred eeeECcCccCc-ccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 67999999999 5779985 9999999999999874 999 999876 589999999999877654
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.9e-10 Score=76.85 Aligned_cols=39 Identities=31% Similarity=0.883 Sum_probs=34.5
Q ss_pred cCCcccccccccccCCCeecccCCcchHHhHhcCC-------CCCCC
Q 020453 21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLC 60 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-------~CP~C 60 (326)
.+.+.|+||++. +.+|++++|||+||..||.+|+ .||.|
T Consensus 18 ~~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDI-LQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSB-CSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCch-hCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 368899999999 5779999999999999999885 38887
No 35
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=6.9e-11 Score=84.69 Aligned_cols=44 Identities=30% Similarity=0.764 Sum_probs=38.9
Q ss_pred cCCcccccccccccCC----CeecccCCcchHHhHhcCC-------CCCCCCcccc
Q 020453 21 IGPLSCMICQALLFEC----SKCTPCSHVYCKACISRFK-------DCPLCGADIE 65 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~----p~~l~C~h~fC~~Cl~~~~-------~CP~Cr~~~~ 65 (326)
.+.+.|+||++. +.+ |+.++|||+||..|+..|+ .||.||..+.
T Consensus 13 ~~~~~C~IC~~~-~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 13 REVLECPICMES-FTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCBCTTTCCB-CCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cCCCCCccCCcc-ccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 367899999999 577 9999999999999999883 4999999876
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=1e-10 Score=78.72 Aligned_cols=43 Identities=23% Similarity=0.781 Sum_probs=37.1
Q ss_pred CCcccccccc-cccCCC----eecccCCcchHHhHhcCC-----CCCCCCcccc
Q 020453 22 GPLSCMICQA-LLFECS----KCTPCSHVYCKACISRFK-----DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~-~l~~~p----~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~ 65 (326)
+++.||||++ . +.+| +.++|||+||..|+.+|+ .||.||..+.
T Consensus 2 ~~~~C~IC~~~~-~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTK-YRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHH-HHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCc-cCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 6789999999 7 4667 578999999999999883 4999999886
No 37
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.98 E-value=2.5e-10 Score=79.37 Aligned_cols=46 Identities=26% Similarity=0.659 Sum_probs=37.9
Q ss_pred cCCccccccccccc-CCCeecc--cCCcchHHhHhcCC-----CCCCCCccccc
Q 020453 21 IGPLSCMICQALLF-ECSKCTP--CSHVYCKACISRFK-----DCPLCGADIEK 66 (326)
Q Consensus 21 ~~~l~C~iC~~~l~-~~p~~l~--C~h~fC~~Cl~~~~-----~CP~Cr~~~~~ 66 (326)
.++++||||++.+- .+++.+| |||+||+.|+..+| .||.||+.+..
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 47899999999842 3466666 99999999999887 39999998873
No 38
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.98 E-value=1.1e-10 Score=94.53 Aligned_cols=68 Identities=26% Similarity=0.519 Sum_probs=53.3
Q ss_pred CCCCCCc--ccCCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc--ccccHHHHHHHHHHH
Q 020453 13 GYDAQSF--KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFI 81 (326)
Q Consensus 13 ~~~~~~~--~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~--~~~n~~l~~~~~~~~ 81 (326)
|++..+. ..+.+.|+||+++ +.+|++++|||+||..||..|+ .||.||..+.. +.++..+.+++..+.
T Consensus 6 g~~~~~~~~~~~~~~C~IC~~~-~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 6 GYDVEFDPPLESKYECPICLMA-LREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp CBCSEESSCCCGGGBCTTTCSB-CSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCChhhccCCCCCCCCCCCChh-hcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 5555533 2367999999999 4669999999999999999985 59999999884 566777777776543
No 39
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.98 E-value=8.5e-11 Score=88.89 Aligned_cols=57 Identities=25% Similarity=0.624 Sum_probs=45.4
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc---ccccHHHHHHHHH
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDR 79 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~---~~~n~~l~~~~~~ 79 (326)
+.+.|+||++. +.+|++++|||+||..||.+|+ .||.||..+.. ...+..+.+++..
T Consensus 22 ~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 22 KSISCQICEHI-LADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHTBCTTTCSB-CSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred CCCCCCCCCcH-hcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 57899999999 5779999999999999998885 39999999873 3345555555543
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.8e-10 Score=73.99 Aligned_cols=38 Identities=37% Similarity=0.950 Sum_probs=33.7
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC-------CCCCC
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLC 60 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-------~CP~C 60 (326)
+.+.|+||++. +.+|+.++|||+||..||..|+ .||.|
T Consensus 14 ~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEY-LKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCB-CSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcc-cCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 67899999999 5779999999999999999983 38887
No 41
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.94 E-value=1.7e-10 Score=80.67 Aligned_cols=44 Identities=30% Similarity=0.860 Sum_probs=39.9
Q ss_pred CCcccccccccccCCCeecccCCc-chHHhHhcCCCCCCCCccccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 66 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~-fC~~Cl~~~~~CP~Cr~~~~~ 66 (326)
+...|+||++. +.+|+.+||||. ||..|+..++.||.||..+..
T Consensus 17 ~~~~C~IC~~~-~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEE-EINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSS-BCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCE
T ss_pred CCCEeEEeCcc-cCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhC
Confidence 45789999999 577999999999 999999999999999999884
No 42
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.94 E-value=8.7e-11 Score=80.54 Aligned_cols=45 Identities=33% Similarity=0.763 Sum_probs=39.1
Q ss_pred ccCCcccccccccccCCC-------eecccCCcchHHhHhcCC----CCCCCCcccc
Q 020453 20 KIGPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIE 65 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~~p-------~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~ 65 (326)
..+.+.|+||++.+ .+| +.++|||+||..||.+|+ .||.||..+.
T Consensus 7 ~~~~~~C~IC~~~~-~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGY-SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBH-HHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCcccChhh-hccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 34788999999994 557 899999999999999886 4999999877
No 43
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.5e-10 Score=78.76 Aligned_cols=45 Identities=33% Similarity=0.763 Sum_probs=38.4
Q ss_pred ccCCcccccccccccCCC-------eecccCCcchHHhHhcCC----CCCCCCcccc
Q 020453 20 KIGPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIE 65 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~~p-------~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~ 65 (326)
..+.+.|+||++.+ .+| +.++|||.||..||..|+ .||.||..+.
T Consensus 12 ~~~~~~C~IC~~~~-~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGY-SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCH-HHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCcccCccc-cccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 34788999999994 546 899999999999999985 4999998764
No 44
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=2.7e-10 Score=78.91 Aligned_cols=44 Identities=30% Similarity=0.652 Sum_probs=39.8
Q ss_pred CCcccccccccccCCCeecccCCc-chHHhHhcCCCCCCCCccccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 66 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~-fC~~Cl~~~~~CP~Cr~~~~~ 66 (326)
+.+.|+||++. +.+|+.+||||. ||..|+.....||.||..+..
T Consensus 24 ~~~~C~IC~~~-~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDR-NIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSS-CCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcCCCC-CCCEEEecCCCHHHHHHHhhCCCCCccCCceecC
Confidence 46789999999 577999999999 999999988889999998874
No 45
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.90 E-value=9.9e-09 Score=95.16 Aligned_cols=116 Identities=14% Similarity=0.087 Sum_probs=97.2
Q ss_pred CCchhHhhHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhH
Q 020453 179 GDADAAVAYFADSVEFLMK-LPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV 257 (326)
Q Consensus 179 h~~H~~~~~~e~~~~~~~~-L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~l 257 (326)
+++.++..+.+.++.++.+ |++.+.. +....++|+.++..+|+|++|..+|++++++.++....+.. ++
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~----~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp------~~ 381 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVY----MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL------NV 381 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH------HH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchH----HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh------HH
Confidence 4567888888888876654 5665554 46788999999999999999999999999999998887765 78
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHhhc
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRC 304 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~~~~ 304 (326)
+.++++||.+|..+|++++|+.+|++|++|++.. ..||..+.+.+++
T Consensus 382 a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 382 ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999886 5566655555444
No 46
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.87 E-value=1e-09 Score=71.04 Aligned_cols=43 Identities=30% Similarity=0.807 Sum_probs=36.6
Q ss_pred CCcccccccccccCC---Ceecc-cCCcchHHhHhcCCC----CCCCCcccc
Q 020453 22 GPLSCMICQALLFEC---SKCTP-CSHVYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~---p~~l~-C~h~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
+...|+||++.+ .. ++.++ |||.||..|+.+|+. ||.||..+.
T Consensus 4 ~~~~C~IC~~~~-~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAEL-EDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCC-CTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccc-cCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 567899999984 54 78887 999999999999964 999998753
No 47
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=4.9e-10 Score=77.65 Aligned_cols=51 Identities=24% Similarity=0.770 Sum_probs=40.7
Q ss_pred CCCCCcccCCcccccccccccCCC---eecccCCcchHHhHhcCC----CCCCCCcccc
Q 020453 14 YDAQSFKIGPLSCMICQALLFECS---KCTPCSHVYCKACISRFK----DCPLCGADIE 65 (326)
Q Consensus 14 ~~~~~~~~~~l~C~iC~~~l~~~p---~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~ 65 (326)
+.......+...|+||++.+ ..+ +.++|+|.||..||..|+ .||.||..+.
T Consensus 14 ~~~~~~~~~~~~C~IC~~~~-~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 14 FNPNNHQSEQTLCVVCMCDF-ESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp BCSSSCSSSCCEETTTTEEC-CBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred ecCccccCCCCCCeECCccc-CCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 44334445778999999984 546 789999999999999985 4999998765
No 48
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.85 E-value=2.3e-10 Score=76.67 Aligned_cols=43 Identities=33% Similarity=0.750 Sum_probs=37.4
Q ss_pred CCcccccccccccCCC-------eecccCCcchHHhHhcCC----CCCCCCcccc
Q 020453 22 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p-------~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~ 65 (326)
+.+.|+||++.+ .+| +.++|||.||..|+.+|+ .||.||..+.
T Consensus 2 ~~~~C~IC~~~~-~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGY-SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBH-HHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhh-hCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 568999999994 546 899999999999999886 4999999876
No 49
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.84 E-value=4.6e-10 Score=76.19 Aligned_cols=44 Identities=34% Similarity=0.800 Sum_probs=37.6
Q ss_pred CCcccccccccccCCC-eecccCCcchHHhHhcCC----CCCCCCccccc
Q 020453 22 GPLSCMICQALLFECS-KCTPCSHVYCKACISRFK----DCPLCGADIEK 66 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p-~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~~ 66 (326)
+...|+||++.+ .+| +.++|||.||..|+.+|+ .||.||..+..
T Consensus 4 ~~~~C~IC~~~~-~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDP-SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCC-CSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccc-cCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 567899999995 555 899999999999999885 49999998764
No 50
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.83 E-value=4.4e-09 Score=97.54 Aligned_cols=118 Identities=10% Similarity=-0.064 Sum_probs=99.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHH
Q 020453 201 DDLEIIHTLSVSLNKIGDLKY--YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAV 278 (326)
Q Consensus 201 ~~~~~~~~i~~~~~~l~~l~~--~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~ 278 (326)
....++..+......+..... ..|+|++|+..|++++++.+++...+.. +++.++++||.+|..+|++++|+
T Consensus 287 ~~e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp------~~a~~~~nLa~~y~~~g~~~eA~ 360 (433)
T 3qww_A 287 QAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV------YMLHMMYQAMGVCLYMQDWEGAL 360 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSH------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhch------HHHHHHHHHHHHHHhhcCHHHHH
Confidence 334455555555566666553 3579999999999999999887766544 78999999999999999999999
Q ss_pred HHHHHHHHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 279 DGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 279 ~~~~~~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
.+|++++++.+++ ..+|+.+..+.++ +.++..+|++.+|++.|++|
T Consensus 361 ~~~~~aL~i~~~~lG~~Hp~~a~~l~nL--a~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 361 KYGQKIIKPYSKHYPVYSLNVASMWLKL--GRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHHSCSSCHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHH--HHHHHhccCHHHHHHHHHHH
Confidence 9999999999998 7789999999999 99999999999999988765
No 51
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.82 E-value=1.4e-09 Score=75.93 Aligned_cols=45 Identities=24% Similarity=0.749 Sum_probs=37.4
Q ss_pred ccCCcccccccccccCCC---eecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453 20 KIGPLSCMICQALLFECS---KCTPCSHVYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~~p---~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
..+.+.|+||++.+ ..+ +.++|+|.||..||..|+. ||.||..+.
T Consensus 12 ~~~~~~C~IC~~~~-~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 12 VGSGLECPVCKEDY-ALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp SSSSCCCTTTTSCC-CTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCCCCCeeCCccc-cCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 34678999999984 444 5679999999999999863 999999887
No 52
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.80 E-value=8.2e-10 Score=71.50 Aligned_cols=44 Identities=27% Similarity=0.760 Sum_probs=37.1
Q ss_pred CCcccccccccccC---CCeecccCCcchHHhHhcCC----CCCCCCcccc
Q 020453 22 GPLSCMICQALLFE---CSKCTPCSHVYCKACISRFK----DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~---~p~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~ 65 (326)
+...|+||++.+.+ .++.++|||.||..|+..|+ .||.||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 56789999998533 38889999999999999985 5999998764
No 53
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1e-09 Score=74.94 Aligned_cols=42 Identities=31% Similarity=0.880 Sum_probs=37.4
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
+.+.|+||++. +.+ +.++|||.||..|+..|+. ||.||..+.
T Consensus 14 ~~~~C~IC~~~-~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 14 DEEECCICMDG-RAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCSSSCCS-CCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCeeCCcC-ccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 67899999999 465 9999999999999999864 999998876
No 54
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.79 E-value=2e-09 Score=73.25 Aligned_cols=46 Identities=33% Similarity=0.820 Sum_probs=38.2
Q ss_pred cCCccccccccccc--CCCeecccCCcchHHhHhcCC----CCCCCCccccc
Q 020453 21 IGPLSCMICQALLF--ECSKCTPCSHVYCKACISRFK----DCPLCGADIEK 66 (326)
Q Consensus 21 ~~~l~C~iC~~~l~--~~p~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~~ 66 (326)
.+...|+||++.+. ..++.++|||.||..||..|+ .||.||..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 35788999999843 347889999999999999985 39999998763
No 55
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.78 E-value=9.4e-09 Score=96.83 Aligned_cols=116 Identities=9% Similarity=-0.039 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHH
Q 020453 203 LEIIHTLSVSLNKIGDLK--YYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG 280 (326)
Q Consensus 203 ~~~~~~i~~~~~~l~~l~--~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~ 280 (326)
..+...++.....++... ..+|+|++|+..|++++++.+.+...+.. +++.++++||.+|..+|++++|+.+
T Consensus 300 e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp------~~a~~~~nLa~~y~~~g~~~eA~~~ 373 (490)
T 3n71_A 300 EVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNL------YVLRLLSIASEVLSYLQAYEEASHY 373 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSH------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 344454554544444443 46799999999999999999887776544 7899999999999999999999999
Q ss_pred HHHHHHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 281 FQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 281 ~~~~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
|++++++.+++ ..+|+.+..+.++ +.++..+|++.+|++.|++|
T Consensus 374 ~~~aL~i~~~~lG~~Hp~~a~~l~nL--a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 374 ARRMVDGYMKLYHHNNAQLGMAVMRA--GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH--HHHHHHCCCHHHHHHHHHHH
Confidence 99999999988 7789999999999 99999999999999988765
No 56
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.77 E-value=1.2e-09 Score=78.73 Aligned_cols=43 Identities=28% Similarity=0.748 Sum_probs=37.0
Q ss_pred CCcccccccccccCC---CeecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453 22 GPLSCMICQALLFEC---SKCTPCSHVYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~---p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
+...|+||++. +.. ++.++|||.||..||..|+. ||.||..+.
T Consensus 39 ~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCcccChh-hcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 56789999998 454 77899999999999999864 999998765
No 57
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=5.4e-09 Score=70.64 Aligned_cols=46 Identities=26% Similarity=0.747 Sum_probs=40.9
Q ss_pred ccCCcccccccccccCCCeecccCCc-chHHhHhcCCCCCCCCccccc
Q 020453 20 KIGPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 66 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~~p~~l~C~h~-fC~~Cl~~~~~CP~Cr~~~~~ 66 (326)
..+...|+||++. ..+++.+||||. ||..|+.....||.||..+..
T Consensus 12 ~~~~~~C~IC~~~-~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNG-TVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSS-CCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcC-CCCEEEECCCChhhhHHHHhcCCCCCCCCcchhc
Confidence 3467899999999 577999999999 999999998899999998874
No 58
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.74 E-value=4.8e-08 Score=90.58 Aligned_cols=118 Identities=16% Similarity=0.014 Sum_probs=95.4
Q ss_pred HhCCchhHhhHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhh
Q 020453 177 AMGDADAAVAYFADSVEFLM-KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL 255 (326)
Q Consensus 177 ~~h~~H~~~~~~e~~~~~~~-~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~ 255 (326)
..+++.++..+.+.++.... .|++.+. .+....++|+.+...+|+|++|+.+|++++++.+........
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~----~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp------ 368 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINI----YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP------ 368 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH------
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccch----HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh------
Confidence 44566666666666664433 3454444 456788999999999999999999999999999998887655
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHhhc
Q 020453 256 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRC 304 (326)
Q Consensus 256 ~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~~~~ 304 (326)
+++.++++||.+|..+|++++|+.+|++|++|++.. ..||..+.+++++
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL 419 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 789999999999999999999999999999999887 5566666666666
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.71 E-value=1.7e-09 Score=83.59 Aligned_cols=45 Identities=33% Similarity=0.813 Sum_probs=39.4
Q ss_pred cCCcccccccccccCCC-------eecccCCcchHHhHhcCCC----CCCCCccccc
Q 020453 21 IGPLSCMICQALLFECS-------KCTPCSHVYCKACISRFKD----CPLCGADIEK 66 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p-------~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~ 66 (326)
.+.+.|+||++. +.+| ++++|||+||..||.+|+. ||.||..+..
T Consensus 5 ~~~~~C~IC~~~-~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDG-YSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCB-HHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChh-hhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 467999999999 4657 9999999999999999963 9999998873
No 60
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=5.2e-09 Score=72.17 Aligned_cols=44 Identities=23% Similarity=0.652 Sum_probs=36.6
Q ss_pred CCcccccccccccCCCeec---ccCCcchHHhHhcCC----CCCCCCccccc
Q 020453 22 GPLSCMICQALLFECSKCT---PCSHVYCKACISRFK----DCPLCGADIEK 66 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l---~C~h~fC~~Cl~~~~----~CP~Cr~~~~~ 66 (326)
+...|+||++.+ ..+..+ +|+|.||..||..|+ .||.||..+..
T Consensus 14 ~~~~C~IC~~~~-~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDF-KPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBC-CSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCcCCCccc-CCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 578999999994 545444 999999999999986 39999998764
No 61
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.7e-08 Score=70.83 Aligned_cols=47 Identities=28% Similarity=0.649 Sum_probs=37.3
Q ss_pred CcccCCcccccccccccCC--------------Ceecc-cCCcchHHhHhcCCC----CCCCCcccc
Q 020453 18 SFKIGPLSCMICQALLFEC--------------SKCTP-CSHVYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 18 ~~~~~~l~C~iC~~~l~~~--------------p~~l~-C~h~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
....+...|+||++.| .+ ++.++ |+|.|+..||.+|+. ||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~-~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 10 SWDVECDTCAICRVQV-MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCCCSCBTTTTBCT-TSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred eecCCCCCCcccChhh-hccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 3445678899999984 43 45555 999999999999974 999998865
No 62
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.63 E-value=7.4e-09 Score=77.83 Aligned_cols=44 Identities=27% Similarity=0.635 Sum_probs=36.5
Q ss_pred CCcccccccccccCCCe------------------ecccCCcchHHhHhcCC---------CCCCCCccccc
Q 020453 22 GPLSCMICQALLFECSK------------------CTPCSHVYCKACISRFK---------DCPLCGADIEK 66 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~------------------~l~C~h~fC~~Cl~~~~---------~CP~Cr~~~~~ 66 (326)
.+..|+||++.| ..|. .++|+|.||..||..|+ .||.||..+..
T Consensus 24 ~~~~C~ICl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKL-AVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEET-TSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhh-cCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 456899999995 4454 78999999999999986 39999998763
No 63
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.61 E-value=1.2e-08 Score=91.11 Aligned_cols=44 Identities=25% Similarity=0.742 Sum_probs=40.4
Q ss_pred CCcccccccccccCCCeecccCCc-chHHhHhcCCCCCCCCccccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 66 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~-fC~~Cl~~~~~CP~Cr~~~~~ 66 (326)
+++.|+||++. +.+|+.+||||+ ||..|+..+..||.||..+..
T Consensus 294 ~~~~C~IC~~~-~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDK-EVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSS-BCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCE
T ss_pred CCCCCCccCCc-CCceEEcCCCChhHhHHHHhcCCcCCCCCCCccC
Confidence 57899999999 577999999999 999999999899999998874
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.58 E-value=5.6e-09 Score=75.59 Aligned_cols=60 Identities=18% Similarity=0.667 Sum_probs=41.9
Q ss_pred CCcccccccccccCCCeec---ccCCcchHHhHhcCC------------CCCC--CCcc--ccc-ccccHHHHHHHHHHH
Q 020453 22 GPLSCMICQALLFECSKCT---PCSHVYCKACISRFK------------DCPL--CGAD--IEK-IEADTTLQDVVDRFI 81 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l---~C~h~fC~~Cl~~~~------------~CP~--Cr~~--~~~-~~~n~~l~~~~~~~~ 81 (326)
+.++|+||++. +..|.++ +|||+||+.|+..+| .||. |+.. +.. .-.+....++++++.
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHH
T ss_pred CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHH
Confidence 57899999999 4657665 799999999997764 2999 9988 542 111222245555555
Q ss_pred h
Q 020453 82 E 82 (326)
Q Consensus 82 ~ 82 (326)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 65
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.56 E-value=1.5e-06 Score=74.16 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 020453 165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 244 (326)
Q Consensus 165 ~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~ 244 (326)
...+..++.+....++...+..+.+.+.....+..... ..........++.+....+++++|+..|++++++.++..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD---HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 34555566777788899999999888887665542211 123455778999999999999999999999999988765
Q ss_pred hcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCcc
Q 020453 245 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPK 322 (326)
Q Consensus 245 ~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (326)
..... ..+..+.++|.++..+|++++|+.++++++.+.+.. ..+|..+.+..++ +.++...|++.+++..
T Consensus 120 ~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~ 191 (283)
T 3edt_B 120 GKFHP------DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL--ASCYLKQGKYQDAETL 191 (283)
T ss_dssp CTTCH------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH--HHHHHHHTCHHHHHHH
T ss_pred CCCCh------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHHHHcCCHHHHHHH
Confidence 54322 456788899999999999999999999999998876 3345555667777 7788888888887777
Q ss_pred ccc
Q 020453 323 FRS 325 (326)
Q Consensus 323 ~~~ 325 (326)
|++
T Consensus 192 ~~~ 194 (283)
T 3edt_B 192 YKE 194 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 66
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.54 E-value=9.7e-09 Score=68.53 Aligned_cols=45 Identities=27% Similarity=0.609 Sum_probs=38.6
Q ss_pred cCCcccccccccccCCCeec--ccCCc-chHHhHhcCCC----CCCCCccccc
Q 020453 21 IGPLSCMICQALLFECSKCT--PCSHV-YCKACISRFKD----CPLCGADIEK 66 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p~~l--~C~h~-fC~~Cl~~~~~----CP~Cr~~~~~ 66 (326)
.++..|+||++. +.+++.+ ||||. ||..|+..|+. ||.||..+..
T Consensus 6 ~~~~~C~IC~~~-~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGR-PKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSS-CSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCC-CCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 466789999999 5668877 99999 89999998864 9999998764
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.53 E-value=2.1e-06 Score=77.68 Aligned_cols=179 Identities=9% Similarity=-0.028 Sum_probs=131.4
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+..+.... ...+. -+.....+..++.+....++...+......+.....+... .
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~----~~~~~----~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~----~ 179 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKL----IFVKD----RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA----Y 179 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTG----GGCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST----T
T ss_pred HHHHhcCHHHHHHHHHHHHHHH----hhCCC----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc----c
Confidence 4566788888877665432110 00000 1122345556677777889999999999998888776643 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
...+......+|.+...+|++++|+..|++++++.++... ....+..+.++|.++..+|++++|+.++++++
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ--------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3345678899999999999999999999999998775421 22467789999999999999999999999999
Q ss_pred HHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 286 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 286 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
.+.+.....|..+....++ +..+..+|++.++..+|++|
T Consensus 252 ~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 252 AVFEESNILPSLPQAYFLI--TQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHTTCGGGHHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhccchhHHHHHHHH--HHHHHHCCCHHHHHHHHHHH
Confidence 9988764335556677777 78888888888887777653
No 68
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.52 E-value=1.5e-08 Score=78.26 Aligned_cols=57 Identities=30% Similarity=0.698 Sum_probs=44.5
Q ss_pred CCCCCCCCCCC-----cccCCcccccccccccCCC-------eecccCCcchHHhHhcCC----CCCCCCcccc
Q 020453 8 PKCPFGYDAQS-----FKIGPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIE 65 (326)
Q Consensus 8 ~~~~~~~~~~~-----~~~~~l~C~iC~~~l~~~p-------~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~ 65 (326)
|.|+..+.... +..+.+.|+||++.+ .+| +.++|||.||..||.+|+ .||.||..+.
T Consensus 52 P~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~-~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 52 PTCRKKINHKRYHPIYIGSGTVSCPICMDGY-SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp TTTCCBCTTTCEEECBCSSSSCBCTTTCCBH-HHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCcCccccccccccCCCCCCCCCCCCcc-ccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 45555554443 244678999999984 546 899999999999999986 3999999876
No 69
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.50 E-value=1.9e-08 Score=66.86 Aligned_cols=44 Identities=25% Similarity=0.602 Sum_probs=38.1
Q ss_pred CCcccccccccccCCCeec--ccCCc-chHHhHhcCC----CCCCCCccccc
Q 020453 22 GPLSCMICQALLFECSKCT--PCSHV-YCKACISRFK----DCPLCGADIEK 66 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l--~C~h~-fC~~Cl~~~~----~CP~Cr~~~~~ 66 (326)
....|+||++. ..+++.+ ||||. ||..|+..++ .||.||..+..
T Consensus 6 ~~~~C~IC~~~-~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKR-PRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSS-BSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCc-CCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 45689999998 5668888 99998 9999999987 79999998764
No 70
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.46 E-value=7.8e-08 Score=89.14 Aligned_cols=109 Identities=13% Similarity=0.024 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 209 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 209 i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
.....+.+..+. ..|++++|+..|++++++.++....+.. +.+.++++|+.+|..+|++++|+.++++++.+.
T Consensus 287 ~~~ll~~ie~~~-~~g~~~~a~~~~~~~L~~~~~~lg~~h~------~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~ 359 (429)
T 3qwp_A 287 VQESLKKIEELK-AHWKWEQVLAMCQAIISSNSERLPDINI------YQLKVLDCAMDACINLGLLEEALFYGTRTMEPY 359 (429)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCSSCCCCTTSH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhccHHHHHHHHHHHHHhccCcCCccch------HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH
Confidence 445555666555 5679999999999999887665554432 689999999999999999999999999999999
Q ss_pred HHh--hcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 289 ESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 289 ~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
+.+ ..+|+.+..+.++ +.++..+|++.+|++.|++|
T Consensus 360 ~~~lg~~Hp~~a~~l~nL--a~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 360 RIFFPGSHPVRGVQVMKV--GKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHSCSSCHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCCChHHHHHHHHH--HHHHHhcCCHHHHHHHHHHH
Confidence 998 7788889999999 99999999999999988765
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.46 E-value=3.8e-06 Score=76.02 Aligned_cols=177 Identities=14% Similarity=0.023 Sum_probs=128.4
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+..+... ..... --+.....+..++.+....++...+....+.+.....+... .
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~-------~~~~~-~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~----~ 177 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKE-------LPFVS-DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL----Y 177 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT-------GGGCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT----C
T ss_pred HHHHHCCHHHHHHHHHHHHHH-------HhhCC-ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC----c
Confidence 455678888887766543211 00000 01233445566677777889999999999988887766543 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
...+......+|.+....|++++|+..|.+++++.+.... ....+..+.++|.++..+|++++|+.++++++
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN--------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2345678889999999999999999999999998765321 11467789999999999999999999999999
Q ss_pred HHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 286 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 286 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.+.+... +|..+....++ +.++..+|+..++..+|++
T Consensus 250 ~~~~~~~-~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 250 KVSREKV-PDLLPKVLFGL--SWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHHHC-GGGHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhC-ChhHHHHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence 9988752 34445666677 7777778888888777665
No 72
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.43 E-value=4e-08 Score=88.26 Aligned_cols=42 Identities=31% Similarity=0.872 Sum_probs=37.3
Q ss_pred CcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCcccc
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIE 65 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~ 65 (326)
...|+||++. +.+|+.+||||.||..|+..|. .||.||..+.
T Consensus 332 ~~~C~ICle~-~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSS-BCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCcC-CCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 3799999999 5779999999999999998773 4999999877
No 73
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.41 E-value=5.6e-06 Score=72.86 Aligned_cols=174 Identities=14% Similarity=0.083 Sum_probs=114.9
Q ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHH
Q 020453 128 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH 207 (326)
Q Consensus 128 ~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~ 207 (326)
...|++++|...+..+-..... .... ......+...+.+....++...++..++.+.....+++. ..
T Consensus 47 ~~~g~~~~A~~~~~~al~~~~~-----~~~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----~~ 113 (307)
T 2ifu_A 47 KNAKQLEQAKDAYLQEAEAHAN-----NRSL---FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-----PD 113 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH-----TTCH---HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-----HH
T ss_pred HHcCCHHHHHHHHHHHHHHHHH-----cCCH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-----HH
Confidence 3467777777666543222110 0000 011234445556777788999999999999888766554 22
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 208 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 208 ~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
.......+++.+... +++++|+.+|++++++...... ....+..+.++|.++..+|++++|+.+|++++.+
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER--------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC--------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677899999988 9999999999999998765211 1235678899999999999999999999999999
Q ss_pred HHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 288 LESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 288 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.......+..+....++ +..+..++++.++..+|++
T Consensus 185 ~~~~~~~~~~~~~~~~~--g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQ--VLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHTTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 87642211112233333 4444445666666666554
No 74
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.40 E-value=8.4e-06 Score=71.05 Aligned_cols=141 Identities=8% Similarity=-0.085 Sum_probs=102.6
Q ss_pred HHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020453 172 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 251 (326)
Q Consensus 172 C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~ 251 (326)
+......++...++...+.+........ .. ........+||.+...+|++++|+.+|++++++.+....
T Consensus 122 ~~~~~~~~~~~~Ai~~~~~al~~~~~~~----~~-~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~------ 190 (293)
T 3u3w_A 122 AAYVLKKVDYEYCILELKKLLNQQLTGI----DV-YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD------ 190 (293)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHTCCCCS----CT-THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC------
T ss_pred HHHHHcccCHHHHHHHHHHHHHHhcccc----cH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc------
Confidence 3444444566777777776665322211 11 123456789999999999999999999999987665311
Q ss_pred chhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHH-hHHhcCcccccC
Q 020453 252 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQK-NHLNQLPKFRSA 326 (326)
Q Consensus 252 ~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 326 (326)
.....+..+.++|.++..+|++++|++++++++.+.......+..+.+..++ +..+..+| .+.++..+|++|
T Consensus 191 -~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--g~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 191 -NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR--GECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHH--HHHHHHTTCCHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH--HHHHHHhCCcHHHHHHHHHHH
Confidence 1235677899999999999999999999999999988765455556677777 77777788 457777777654
No 75
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.38 E-value=5.6e-06 Score=64.05 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453 167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 246 (326)
Q Consensus 167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~ 246 (326)
.+...+.+....++...++...+.+......... ...+......++.+....+++++|+..|++++++......
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~- 84 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD- 84 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-
Confidence 3444556666778888888888888877655433 2334567788999999999999999999999988765311
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
....+..+.++|.++..+|++++|++++++++.+.+.....+..+.....+ +..+...|++.++..+|++
T Consensus 85 -------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 85 -------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL--GNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHH--HHHHHHccCHHHHHHHHHH
Confidence 123466788999999999999999999999999987753223334455556 6677777777777766654
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.38 E-value=1.3e-05 Score=69.27 Aligned_cols=184 Identities=17% Similarity=0.167 Sum_probs=128.8
Q ss_pred HHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhH
Q 020453 125 MRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE 204 (326)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~ 204 (326)
...+..|++++|...+..+-........ .. -+.....+..++.+....++...+..+.+.+.....+.....
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-- 106 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSG--HD----HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-- 106 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHC--SS----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcC--CC----CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC--
Confidence 3566788999988877654332221110 00 122233445566777778888999988888876655431111
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453 205 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284 (326)
Q Consensus 205 ~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~ 284 (326)
..........++.+....+++++|+..|++++++.+........ ..+..+.++|.++..+|++++|+++++++
T Consensus 107 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 107 -HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP------DVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp -CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12345567889999999999999999999999988776443322 45677889999999999999999999999
Q ss_pred HHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 285 IKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 285 ~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+.+.+.. ..+|....+...+ +.++..+|++.++...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNL--ASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 9998876 3344445566666 7777778888887777654
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.36 E-value=2.6e-06 Score=74.49 Aligned_cols=137 Identities=9% Similarity=-0.003 Sum_probs=102.6
Q ss_pred HHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q 020453 174 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ 253 (326)
Q Consensus 174 ~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~ 253 (326)
+....++...+...+..+.....+++. .........+++.+...+|++++|+..|++++++..+...
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-------- 112 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGN-----EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-------- 112 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC--------
Confidence 345678889999999888887776653 2334567789999999999999999999999998765311
Q ss_pred hhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 254 VLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 254 ~~~la~~l~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
....+..+.++|.++... |++++|+..|++++.+..........+.+..++ +.++..+|++.+++..|++
T Consensus 113 ~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l--g~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC--ADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH--HHHHHHhCCHHHHHHHHHH
Confidence 224577899999999996 999999999999999987532111123355566 6677777777777766654
No 78
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.36 E-value=1.9e-06 Score=75.96 Aligned_cols=137 Identities=12% Similarity=0.040 Sum_probs=104.7
Q ss_pred HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453 173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 252 (326)
Q Consensus 173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~ 252 (326)
.+....++...+...+..+.+...+++. .........+++.+...++++++|+..|++++++.++..
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-------- 110 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRS-----LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-------- 110 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--------
Confidence 4455678888888888888887776654 234456778999999999999999999999999865421
Q ss_pred hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.....+..+.++|.++.. |++++|+++|++++.+..........+.+..++ +.++..+|++.+++.+|++
T Consensus 111 ~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l--g~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 111 TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA--SRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 122457789999999999 999999999999999987642212224466677 7777778888888777765
No 79
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.35 E-value=6.5e-06 Score=66.87 Aligned_cols=146 Identities=17% Similarity=0.126 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 020453 166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 245 (326)
Q Consensus 166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~ 245 (326)
..+...+.+....++...+....+.+......++. .........+++.+....|++++|+..|++++++.+....
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 101 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-----HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE 101 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence 44555667777788899999999888887776654 3344567789999999999999999999999998764211
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 246 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 246 ~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
. ....+..+.++|.++..+|++++|+.++++++.+.+........+....++ +.++...|+..++..+|++
T Consensus 102 -~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 102 -D------PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL--GDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp -C------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred -c------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH--HHHHHHCcCHHHHHHHHHH
Confidence 1 123567788999999999999999999999999887642211223344555 6666666777776666554
No 80
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=1.8e-06 Score=65.71 Aligned_cols=103 Identities=13% Similarity=0.059 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 207 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 207 ~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
...+.+.+++|......|++++|+..|.+++++ .+.+ +..+.++|.++..+|++++|++.++++++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-------~p~~-------~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-------DPSN-------ITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345667889999999999999999999999876 2322 46788999999999999999999999998
Q ss_pred HHHHh-hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 287 RLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 287 ~~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+-... ...+..+.+..++ +..+..++++.+++.+|++
T Consensus 71 ~~~~~~~~~~~~a~~~~~l--g~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 71 VGRETRADYKLIAKAMSRA--GNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHTTCCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred hCcccchhhHHHHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 87543 1111113344455 6666666677777666654
No 81
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.28 E-value=2.6e-07 Score=68.01 Aligned_cols=44 Identities=32% Similarity=0.602 Sum_probs=36.0
Q ss_pred cCCcccccccccccCCC------------------eecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453 21 IGPLSCMICQALLFECS------------------KCTPCSHVYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p------------------~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
.+.-.|+||++.| ..+ +.++|+|.|+..||..|.. ||.||..+.
T Consensus 35 ~~~d~CaIC~~~~-~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHI-MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCT-TSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhH-hCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 3567899999984 534 4589999999999999853 999998754
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.27 E-value=1.9e-05 Score=68.94 Aligned_cols=172 Identities=11% Similarity=0.047 Sum_probs=112.4
Q ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHH
Q 020453 128 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH 207 (326)
Q Consensus 128 ~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~ 207 (326)
...|++++|...+..+-..... .... ......+...+.+....++...++..++.+.......+. ..
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~-----~~~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----~~ 114 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKK-----AGNE---DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----FR 114 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHH-----TTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HH
T ss_pred HHcCCHHHHHHHHHHHHHHHHH-----hCCH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-----HH
Confidence 3467777777766544221110 0000 111234455667777888999999999988888766554 22
Q ss_pred HHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 208 TLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 208 ~i~~~~~~l~~l~~~~-~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
.......+++.+.... +++++|+..|++++++...... ....+..+.++|.++..+|++++|+..|++++.
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS--------VALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC--------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456778999999995 9999999999999998764211 113356788999999999999999999998876
Q ss_pred HHHHhhcCCCc----hhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 287 RLESLTLKPEE----AGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 287 ~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+... .+.. .....++ +.++..+|++.++..+|++
T Consensus 187 ~~~~---~~~~~~~~~~~~~~l--g~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 187 SSMG---NRLSQWSLKDYFLKK--GLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp TTSS---CTTTGGGHHHHHHHH--HHHHHHTTCHHHHHHHHHG
T ss_pred HHhc---CCcccHHHHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 5321 1111 1133344 5555556666666666554
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.26 E-value=2.6e-06 Score=84.02 Aligned_cols=132 Identities=17% Similarity=0.260 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 160 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 239 (326)
Q Consensus 160 ~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~ 239 (326)
.||.|.+.+..++.+....|+..+++..++.+.+.. +.. ..+..+++.+...+|++++|+..|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~----P~~-------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEF-------AAAHSNLASVLQQQGKLQEALMHYKEAIRI 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 578888888888888888888888887777666442 222 234566777777777777777777777654
Q ss_pred HHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhc
Q 020453 240 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQ 319 (326)
Q Consensus 240 ~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 319 (326)
. +. .+..+.++|.++..+|++++|++.|++++++ +|+.+....++ +.++..+|++.++
T Consensus 73 ~-------P~-------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l------~P~~~~a~~~L--g~~~~~~g~~~eA 130 (723)
T 4gyw_A 73 S-------PT-------FADAYSNMGNTLKEMQDVQGALQCYTRAIQI------NPAFADAHSNL--ASIHKDSGNIPEA 130 (723)
T ss_dssp C-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHH
T ss_pred C-------CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHcCCHHHH
Confidence 2 11 1334455555555555555555555544432 34444444444 4444444444444
Q ss_pred Ccccc
Q 020453 320 LPKFR 324 (326)
Q Consensus 320 ~~~~~ 324 (326)
+..|+
T Consensus 131 i~~~~ 135 (723)
T 4gyw_A 131 IASYR 135 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.26 E-value=2.8e-06 Score=72.41 Aligned_cols=138 Identities=17% Similarity=0.116 Sum_probs=106.0
Q ss_pred HhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhh
Q 020453 177 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 256 (326)
Q Consensus 177 ~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~ 256 (326)
..++.+.++.+++.+.+...++.... ..........++.+....+++++|+..|++++++.++....... .
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~ 83 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHD---HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP------A 83 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSS---SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH------H
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch------H
Confidence 34677889999998887766543322 12345577889999999999999999999999998776543322 4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.+..+.++|.++..+|++++|+++|++++.+.++. ..+|.......++ +..+..++++.+++.+|++
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~ 152 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNL--ALLCQNQGKAEEVEYYYRR 152 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH--HHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 67788999999999999999999999999999887 3245555666667 7777777777777776654
No 85
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.20 E-value=6.4e-06 Score=74.52 Aligned_cols=140 Identities=13% Similarity=0.054 Sum_probs=108.3
Q ss_pred HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453 173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 252 (326)
Q Consensus 173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~ 252 (326)
......++...+....+.+......+.. ..........++.+....+++++|+.+|.+++++.+....
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~------- 178 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKD-----RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA------- 178 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST-------
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc-------
Confidence 5555668888888888877766555433 2334667889999999999999999999999998765311
Q ss_pred hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
.....+..+.++|.++..+|++++|+++|++++.+.+.....+..+.+..++ +.++..+|++.+++.+|++|
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--g~~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI--GLCKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH--HHHHHHCCCHHHHHHHHHHH
Confidence 1235678899999999999999999999999999998764333445567777 88888888888888777653
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.19 E-value=7.7e-06 Score=73.93 Aligned_cols=140 Identities=11% Similarity=0.005 Sum_probs=109.0
Q ss_pred HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453 173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 252 (326)
Q Consensus 173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~ 252 (326)
......++...+...++.+......+.. .........+++.+....+++++|+.+|.+++++.+....
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~------- 176 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSD-----DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL------- 176 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT-------
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC-------
Confidence 4455678888888888887766555543 2445677889999999999999999999999988764221
Q ss_pred hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
.....+..+.++|.++..+|++++|+++|++++.+.+.....+..+.+..++ +.++..+|++.+++.+|++|
T Consensus 177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--g~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI--ANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHHTCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHCCCHHHHHHHHHHH
Confidence 1124678899999999999999999999999999998763333345577778 88888888888888887653
No 87
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.19 E-value=3e-05 Score=70.25 Aligned_cols=175 Identities=16% Similarity=0.168 Sum_probs=124.5
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+...- ...+.... .....+..++.+....++...+..+++.+......+..
T Consensus 57 ~~~~~g~~~~A~~~~~~al-------~~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 121 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAI-------QAGTEDLR---TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND----- 121 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHH-------HHCCSCHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHhCcHHHHHHHHHHHH-------HhcccChh---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-----
Confidence 5677888888887775432 21222110 11234455667777788999999999888877666543
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCC------------
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN------------ 273 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~------------ 273 (326)
..........++.+....|++++|+..|++++++.+.... ....+..+.++|.++..+|+
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 193 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD--------RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc--------hHHHHHHHHHHHHHHHHcCcccccccchhhhh
Confidence 3445567788999999999999999999999998776422 12457788899999999999
Q ss_pred -----HHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 274 -----EDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 274 -----~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+++|++++++++.+.+.....+..+.+..++ +..+...+++.+++.+|++
T Consensus 194 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNL--GNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHcCChHHHHHHHHH
Confidence 9999999999998887763334444455556 6666677777777666654
No 88
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.17 E-value=8.1e-06 Score=64.47 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 289 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 289 (326)
+....+.|......|+|++|+..|.+++++.-.....+..+ .....+....++|.++..+|++++|+..|+++++++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~--~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD--HAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhh--hccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 45567888899999999999999999999865421111001 1111244788999999999999999999999999977
Q ss_pred Hh-hcCCCchhHH----hhccchhhhHHHHhHHhcCcccccC
Q 020453 290 SL-TLKPEEAGLE----QRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 290 ~l-~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
+- ..+|+.+... .+. +..+..++++..++..|++|
T Consensus 89 ~~~e~~pd~~~A~~~~~~~r--G~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSR--ALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhH--HHHHHHCCCHHHHHHHHHHH
Confidence 76 7788887777 778 88999999999999888764
No 89
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.16 E-value=3.1e-05 Score=67.38 Aligned_cols=140 Identities=7% Similarity=-0.108 Sum_probs=94.1
Q ss_pred HHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020453 172 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 251 (326)
Q Consensus 172 C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~ 251 (326)
+......++...+....+.+......... .........++|.+....+++++|+.+|++++++.+... ...
T Consensus 122 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~----~~~ 192 (293)
T 2qfc_A 122 AAYVLKKVDYEYCILELKKLLNQQLTGID-----VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH----DNE 192 (293)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHTTCCCSSC-----TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----CCH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC----ccc
Confidence 34444456677777666655543222111 112355788999999999999999999999998866422 110
Q ss_pred chhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhc-Cccccc
Q 020453 252 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQ-LPKFRS 325 (326)
Q Consensus 252 ~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 325 (326)
...+..+.++|.++..+|++++|++++++++.+..........+.+..++ +..+..+|++.++ ..+|++
T Consensus 193 ---~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~l--g~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 193 ---EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR--GECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHH--HHHHHHTTCCHHHHHHHHHH
T ss_pred ---cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH--HHHHHHcCCcHHHHHHHHHH
Confidence 01236788999999999999999999999999986543333334555566 6666666666666 444443
No 90
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.14 E-value=4.9e-05 Score=68.32 Aligned_cols=175 Identities=15% Similarity=0.172 Sum_probs=125.2
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+...- ...+.... .....+..++.+....++...+....+.+......+..
T Consensus 18 ~~~~~g~~~~A~~~~~~al-------~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 82 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAV-------QVGTEDLK---TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD----- 82 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHH-------HHCCSCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHhccHHHHHHHHHHHH-------hcCcccHH---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-----
Confidence 5677888888888775432 21222211 11234445566777788889999998888877666543
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCC------------
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN------------ 273 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~------------ 273 (326)
..........++.+....|++++|+..|.+++++....... ...+..+.++|.++..+|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 154 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--------VGEARALYNLGNVYHAKGKSFGCPGPQDVGE 154 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--------HHHHHHHHHHHHHHHHHHHTCC-------CC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------cchHHHHHHHHHHHHHcCCcccccccchhhh
Confidence 23445677889999999999999999999999987764321 2457788899999999999
Q ss_pred --------HHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 274 --------EDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 274 --------~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+++|+.++++++.+.+.....+..+.+..++ +.++..+|++.+++..|++
T Consensus 155 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 155 FPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNL--GNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHHTBHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH--HHHHHHccCHHHHHHHHHH
Confidence 9999999999999887764334444566666 7777777777777766654
No 91
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.13 E-value=2.1e-05 Score=68.03 Aligned_cols=150 Identities=17% Similarity=0.076 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 020453 165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 244 (326)
Q Consensus 165 ~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~ 244 (326)
...+...+.+....++...+..+.+.+.....+..... ..........++.+....+++++|+..|++++++.+...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD---HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS---SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 34455566666778888999988888887655443111 223355678899999999999999999999999887765
Q ss_pred hcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCcc
Q 020453 245 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPK 322 (326)
Q Consensus 245 ~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (326)
..... ..+..+.++|.++..+|++++|+.++++++.+.+.. ..+|....+..++ +.++...+++.+++..
T Consensus 104 ~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 104 GKDHP------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL--ALLCQNQGKYEEVEYY 175 (311)
T ss_dssp CTTCH------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH--HHHHHTTTCHHHHHHH
T ss_pred CCCCh------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH--HHHHHHcCCHHHHHHH
Confidence 43322 456788899999999999999999999999998876 3344445555556 6666666666666666
Q ss_pred ccc
Q 020453 323 FRS 325 (326)
Q Consensus 323 ~~~ 325 (326)
|++
T Consensus 176 ~~~ 178 (311)
T 3nf1_A 176 YQR 178 (311)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 92
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.09 E-value=5e-07 Score=59.36 Aligned_cols=42 Identities=10% Similarity=0.262 Sum_probs=37.1
Q ss_pred CcccccccccccCCCeec-ccCCcchHHhHhcCCC----CCCCCcccc
Q 020453 23 PLSCMICQALLFECSKCT-PCSHVYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
.+.|||++++ ..+|+.+ ++||+|++.||++|+. ||..+..+.
T Consensus 3 ~~~CpIs~~~-m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKV-PRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSC-CSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCC-CCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 4789999999 5779999 9999999999999963 999998876
No 93
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.07 E-value=1.6e-05 Score=60.20 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453 205 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284 (326)
Q Consensus 205 ~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~ 284 (326)
+....++..++.|......|++++|+..|++++++ .+.+ ...+.++|.++..+|++++|++.++++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-------DPEN-------AILYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 44566778889999999999999999999998765 2222 456778899999999999999888877
Q ss_pred HHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 285 IKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 285 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+++ +|..+....++ +.++..+|++.+++..|++
T Consensus 74 l~~------~p~~~~a~~~l--g~~~~~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 74 IRL------DSKFIKGYIRK--AACLVAMREWSKAQRAYED 106 (126)
T ss_dssp HHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred HHh------hhhhhHHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence 654 56666666667 7777778888877777664
No 94
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.06 E-value=1.8e-05 Score=78.07 Aligned_cols=152 Identities=15% Similarity=0.204 Sum_probs=110.4
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
....+|++++|...+..+ +.. -|.+...+..++.+....++..+++..++.+.+. .+..
T Consensus 18 ~~~~~G~~~eAi~~~~kA-------l~l-------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----~P~~--- 76 (723)
T 4gyw_A 18 IKREQGNIEEAVRLYRKA-------LEV-------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----SPTF--- 76 (723)
T ss_dssp HHHHTTCHHHHHHHHHHH-------HHH-------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC---
T ss_pred HHHHcCCHHHHHHHHHHH-------HHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC---
Confidence 456789999998877643 222 2333455666777777889988888887776654 2322
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
..+..+++.+...++++++|+..|++++++ .+. .+..+.++|.++..+|++++|++.|++++
T Consensus 77 ----~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-------~P~-------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 138 (723)
T 4gyw_A 77 ----ADAYSNMGNTLKEMQDVQGALQCYTRAIQI-------NPA-------FADAHSNLASIHKDSGNIPEAIASYRTAL 138 (723)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346678999999999999999999999876 222 25678899999999999999999999887
Q ss_pred HHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 286 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 286 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
++ +|+.+....++ +.++..++++.++...|+
T Consensus 139 ~l------~P~~~~a~~~L--~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 139 KL------KPDFPDAYCNL--AHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp HH------CSCCHHHHHHH--HHHHHHTTCCTTHHHHHH
T ss_pred Hh------CCCChHHHhhh--hhHHHhcccHHHHHHHHH
Confidence 64 56776666666 666666665555544443
No 95
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.06 E-value=0.00014 Score=65.40 Aligned_cols=135 Identities=14% Similarity=0.140 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453 167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 246 (326)
Q Consensus 167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~ 246 (326)
.+..++.+....++...+..+.+.+......... ..........++.+....|++++|+..|++++++......
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~- 302 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-----RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND- 302 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC-----chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-
Confidence 4445556677788889999888888877666543 3344567788999999999999999999999988765321
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhH
Q 020453 247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNH 316 (326)
Q Consensus 247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 316 (326)
....+..+..+|.++..+|++++|+.++++++.+.+.....+..+.....+ +.++..+|+.
T Consensus 303 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~ 363 (406)
T 3sf4_A 303 -------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNL--SDLQMVLGLS 363 (406)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHHHTT
T ss_pred -------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHH--HHHHHHhhHh
Confidence 234567788999999999999999999999999988763333334444445 5555555543
No 96
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.03 E-value=0.0001 Score=66.79 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453 167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 246 (326)
Q Consensus 167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~ 246 (326)
.+..++.+....++...+..+.+.+......... ..........++.+....+++++|+..|++++++......
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~- 298 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD-----RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE- 298 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC-
Confidence 4445556677788888898888888776655432 2334557788999999999999999999999988765311
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
....+..+..+|.++..+|++++|+.++++++.+.......+..+.+...+ +.++..+|++.++..+|++
T Consensus 299 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 299 -------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSL--GNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHH--HHHHHHhccHHHHHHHHHH
Confidence 124567788899999999999999999999999988763223334455556 6667777777777776654
No 97
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.00 E-value=5.6e-05 Score=65.64 Aligned_cols=175 Identities=15% Similarity=0.163 Sum_probs=119.7
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+...- ...+... ......+..++.+....++...+..+.+.+.........
T Consensus 14 ~~~~~g~~~~A~~~~~~al-------~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 78 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAV-------QVGTEDL---KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD----- 78 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHH-------HHCCSCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHhccHHHHHHHHHHHH-------hhCcccH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc-----
Confidence 4567888888887775432 2122211 111234445566677788889999888888877655443
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCC------------
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN------------ 273 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~------------ 273 (326)
..........++.+....|++++|+..|++++++...... ....+..+..++.++..+|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--------KVGEARALYNLGNVYHAKGKSFGCPGPQDTGE 150 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHHHTSSSSSCC----
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--------chHHHHHHHHHHHHHHHcCcccccchhhhhhh
Confidence 2334566788999999999999999999999988765321 12356778889999999999
Q ss_pred --------HHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 274 --------EDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 274 --------~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+++|+.++++++.+.+.....+..+.+..++ +..+...+++.++...|++
T Consensus 151 ~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~ 208 (338)
T 3ro2_A 151 FPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL--GNTHYLLGNFRDAVIAHEQ 208 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH--HHHHHHhCCHHHHHHHHHH
Confidence 8999999999888877653333334455555 6666666676666665543
No 98
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.00 E-value=1.7e-05 Score=73.48 Aligned_cols=109 Identities=14% Similarity=0.034 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 289 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 289 (326)
....+.|+.+...+|++++|+..|++++++.+........ ...+.++.++|.++..+|++++|+.+|++++.+.+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~-----~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAE-----IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCT-----TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccc-----hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 4467889999999999999999999999998876543321 13467899999999999999999999999999998
Q ss_pred Hh--hcCCCchhHHhhccchhhhHHH--HhHHhcCccccc
Q 020453 290 SL--TLKPEEAGLEQRCWNSSTTNFQ--KNHLNQLPKFRS 325 (326)
Q Consensus 290 ~l--~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 325 (326)
.+ ..+++.+.+..+. +..+..+ +++.+|+..|++
T Consensus 126 ~~~~~~~~~~~~~~~~~--g~~~~~~~~~~y~~A~~~~~k 163 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEE--GWTRLKCGGNQNERAKVCFEK 163 (472)
T ss_dssp HSCCSSCCCCHHHHHHH--HHHHHHHCTTHHHHHHHHHHH
T ss_pred hcccccchhhHHHHHHH--HHHHHHHccccHHHHHHHHHH
Confidence 87 2244444444433 2222222 255666666654
No 99
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.96 E-value=0.00019 Score=62.25 Aligned_cols=176 Identities=15% Similarity=0.123 Sum_probs=110.0
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+..+-...... .. -+.....+..++.+....++...+....+.+.........
T Consensus 52 ~~~~~g~~~~A~~~~~~al~~~~~~----~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 118 (338)
T 3ro2_A 52 AYFYLHDYAKALEYHHHDLTLARTI----GD----QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----- 118 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHH----TC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhcc----cc----cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-----
Confidence 4566788888877665443221110 00 1112334445556667788888999888888877666543
Q ss_pred HHHHHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGD--------------------LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVA 265 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~--------------------~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~ 265 (326)
..........++.+....++ +++|+..|++++++.+.... ....+..+.+++
T Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~~~~l~ 190 (338)
T 3ro2_A 119 KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD--------RAAQGRAFGNLG 190 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHH
Confidence 23345567788888888888 89999999888887655321 123456677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 266 DVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
.++..+|++++|+.++++++.+.......+..+....++ +..+...|+..++...|+
T Consensus 191 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL--GNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence 888888888888888888887776542222222234444 455555555555554443
No 100
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.95 E-value=0.0011 Score=50.53 Aligned_cols=144 Identities=13% Similarity=0.147 Sum_probs=102.0
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+..+-...... ... ......+..++.+....++...+..+.+.+.........
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~~----~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----- 84 (164)
T 3ro3_A 18 THYLLGNFRDAVIAHEQRLLIAKEF----GDK----AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----- 84 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHH----TCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHh----CCc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 3456788888877665443222110 000 011234445567777788999999999888877666543
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
..........++.+....+++++|+..|++++++.+.... ....+..+.+++.++..+|++++|++++++++
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc--------hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2334556778999999999999999999999988665321 22456778889999999999999999999999
Q ss_pred HHHHH
Q 020453 286 KRLES 290 (326)
Q Consensus 286 ~~~~~ 290 (326)
.+.++
T Consensus 157 ~~~~~ 161 (164)
T 3ro3_A 157 EISRE 161 (164)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 88764
No 101
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.94 E-value=1.4e-06 Score=64.93 Aligned_cols=43 Identities=30% Similarity=0.585 Sum_probs=1.0
Q ss_pred CCcccccccccccCCC------------------eecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453 22 GPLSCMICQALLFECS------------------KCTPCSHVYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p------------------~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
+.-.|+||++.| ..+ +.++|+|.|+..||.+|.. ||.||..+.
T Consensus 47 ~~d~CaICl~~~-~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHI-MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhh-cCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 456899999984 432 2358999999999999974 999998753
No 102
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.92 E-value=0.00056 Score=55.07 Aligned_cols=146 Identities=21% Similarity=0.215 Sum_probs=104.9
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+..+-..... ... -+.....+...+.+....++...+....+.+.......+...
T Consensus 35 ~~~~~g~~~~A~~~~~~al~~~~~-----~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--- 103 (203)
T 3gw4_A 35 VYAFMDRFDEARASFQALQQQAQK-----SGD---HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP--- 103 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHT-----TCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHH-----cCC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH---
Confidence 456678888887766544322110 000 111223444556777778899999999988888776665321
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
........+++.+....|++++|+..|++++++.+.... ....+..+.+++.++..+|++++|+..+++++
T Consensus 104 -~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 104 -LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--------QVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp -HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--------hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 234556788999999999999999999999988654221 22456678899999999999999999999999
Q ss_pred HHHHHh
Q 020453 286 KRLESL 291 (326)
Q Consensus 286 ~~~~~l 291 (326)
.+.++.
T Consensus 175 ~~~~~~ 180 (203)
T 3gw4_A 175 DIFAEL 180 (203)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 999876
No 103
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.92 E-value=8.4e-05 Score=58.39 Aligned_cols=109 Identities=14% Similarity=0.055 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCch----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453 209 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ----VLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284 (326)
Q Consensus 209 i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~----~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~ 284 (326)
........|......|++++|+..|.+++++.............. ....+..+.++|.++..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 355677899999999999999999999999876554322221110 1234567889999999999999999999888
Q ss_pred HHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 285 IKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 285 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+.+ +|.++....++ +..+..+|++.+++..|++
T Consensus 90 l~~------~p~~~~a~~~~--g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 90 LKR------EETNEKALFRR--AKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp HHH------STTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred Hhc------CCcchHHHHHH--HHHHHHHhcHHHHHHHHHH
Confidence 765 56666666666 7777777777777766654
No 104
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.90 E-value=0.00012 Score=58.40 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=73.7
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+..+ +.. -|.+...+..++.+....++...+......+... .+...
T Consensus 14 ~~~~~g~~~~A~~~~~~a-------l~~-------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~----~~~~~-- 73 (184)
T 3vtx_A 14 KKRTKGDFDGAIRAYKKV-------LKA-------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL----DTTSA-- 73 (184)
T ss_dssp HHHHHTCHHHHHHHHHHH-------HHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCH--
T ss_pred HHHHcCCHHHHHHHHHHH-------HHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CchhH--
Confidence 345688999998877644 222 2223334444555555566666555544433321 11111
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
.....++.+....++++.+...+.+++++ .+.+ ......+|.++..+|++++|++.|++++
T Consensus 74 -----~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-------~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~l 134 (184)
T 3vtx_A 74 -----EAYYILGSANFMIDEKQAAIDALQRAIAL-------NTVY-------ADAYYKLGLVYDSMGEHDKAIEAYEKTI 134 (184)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------Cccc-------hHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 12233444445555555555555554432 1111 2233445555555555555555555443
Q ss_pred HHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 286 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 286 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
++ +|.++.+..++ +.++..+|++.+++..|++
T Consensus 135 ~~------~p~~~~~~~~l--g~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 135 SI------KPGFIRAYQSI--GLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp HH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred Hh------cchhhhHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence 32 34444444444 5555555555555554443
No 105
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.88 E-value=0.00019 Score=59.49 Aligned_cols=152 Identities=13% Similarity=0.020 Sum_probs=102.5
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+...- ...+. .....+.+.+.+....++...++...+.+.. +.+..
T Consensus 16 ~~~~~~~~~~A~~~~~~al-------~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~--- 75 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYL-------KLTNN------QDSVTAYNCGVCADNIKKYKEAADYFDIAIK----KNYNL--- 75 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHH-------HHTTT------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCSH---
T ss_pred HHHHccCHHHHHHHHHHHH-------hccCC------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH----hCcch---
Confidence 4667888888888776432 11110 1123344466777778888888777766552 33332
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
......++.+...++++++|+..|++++++ .+.+......++..+.++|.++..+|++++|++.|++++
T Consensus 76 ----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 76 ----ANAYIGKSAAYRDMKNNQEYIATLTEGIKA-------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 335667899999999999999999998765 334444444567788899999999999999999988776
Q ss_pred HHHHHhhcCCC--chhHHhhccchhhhHHHHhH
Q 020453 286 KRLESLTLKPE--EAGLEQRCWNSSTTNFQKNH 316 (326)
Q Consensus 286 ~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~ 316 (326)
.+ +|+ .+....++ +.++...+..
T Consensus 145 ~~------~p~~~~~~~~~~l--~~~~~~~~~~ 169 (228)
T 4i17_A 145 DV------TSKKWKTDALYSL--GVLFYNNGAD 169 (228)
T ss_dssp TS------SCHHHHHHHHHHH--HHHHHHHHHH
T ss_pred hc------CCCcccHHHHHHH--HHHHHHHHHH
Confidence 53 566 55555555 5555555544
No 106
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00021 Score=65.22 Aligned_cols=176 Identities=13% Similarity=0.126 Sum_probs=105.3
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCh----------HHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTS----------ELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFL 195 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~----------~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~ 195 (326)
..+..|++.+|...+... +...+... ..-....+.+..++..+...++...+..+...+....
T Consensus 13 ~l~~~~~y~eA~~~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSL-------LDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHTCHHHHHHHHHHH-------HHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHCCCHHHHHHHHHHH-------HhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 456678888887766422 22222110 1222233456667777778899888888888777766
Q ss_pred HhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHH
Q 020453 196 MKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNED 275 (326)
Q Consensus 196 ~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~ 275 (326)
..+.. ........+.++.+....+++++++..+.+++.+.+..... +..+....++|.++...|++.
T Consensus 86 ~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~ 152 (434)
T 4b4t_Q 86 MQFAK-----SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV--------FLKHSLSIKLATLHYQKKQYK 152 (434)
T ss_dssp HTSCH-----HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC--------SSHHHHHHHHHHHHHHHTCHH
T ss_pred HHccc-----hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc--------HHHHHHHHHHHHHHHHccChH
Confidence 65542 11123345567777777788888888888877765542111 124566677788888888888
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453 276 VAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF 323 (326)
Q Consensus 276 ~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (326)
+|+..+++++.........+..+.+...+ +.++..++++.++...|
T Consensus 153 ~A~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~ 198 (434)
T 4b4t_Q 153 DSLALINDLLREFKKLDDKPSLVDVHLLE--SKVYHKLRNLAKSKASL 198 (434)
T ss_dssp HHHHHHHHHHHHHTTSSCSTHHHHHHHHH--HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHhCcHHHHHHHH
Confidence 88888877776665543333334444444 44555555555554443
No 107
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.80 E-value=0.00037 Score=52.55 Aligned_cols=102 Identities=12% Similarity=0.191 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 020453 168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 247 (326)
Q Consensus 168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~ 247 (326)
.+.+|......++...++..++.+.+. .+.. .....+++.+...++++++|+..|++++++......
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~----~p~~-------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~-- 77 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL----DPSN-------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA-- 77 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch--
Confidence 344566667888889998888877654 3322 335678999999999999999999999988654221
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 248 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 248 ~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
....++..+.++|.++..+|++++|++.|++++..
T Consensus 78 -----~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 78 -----DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23356778999999999999999999999988753
No 108
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.80 E-value=0.00087 Score=58.07 Aligned_cols=114 Identities=9% Similarity=0.033 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453 167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 246 (326)
Q Consensus 167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~ 246 (326)
.+..++.+....++...+..+++.+......+.. ..........+++.+...++++++|+.+|++++++.++...
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~- 231 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS- 231 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc-
Confidence 3455667777888999999999999887776643 23445667889999999999999999999999998765321
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhh
Q 020453 247 HSNVPSQVLDVAVSLAKVADVDRSIGN-EDVAVDGFQEAIKRLESLT 292 (326)
Q Consensus 247 ~~~~~~~~~~la~~l~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~l~ 292 (326)
...++..+.++|.++..+|+ +++|+++|++++.+.+.+.
T Consensus 232 -------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~ 271 (293)
T 3u3w_A 232 -------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp -------CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 12468889999999999995 6999999999999998763
No 109
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.74 E-value=0.00043 Score=57.28 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
....++.+....|++++|+..|++++++. .+ ...+.++|.++..+|++++|+..|++++.+
T Consensus 120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 180 (217)
T 2pl2_A 120 LHLQRGLVYALLGERDKAEASLKQALALE--------DT-------PEIRSALAELYLSMGRLDEALAQYAKALEQ---- 180 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc--------cc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 45678999999999999999999998773 11 345678999999999999999999887753
Q ss_pred hcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
+|++..+..++ +.++..+|++.++...|+++
T Consensus 181 --~P~~~~~~~~l--a~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 181 --APKDLDLRVRY--ASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp --STTCHHHHHHH--HHHHTC--------------
T ss_pred --CCCChHHHHHH--HHHHHHccCHHHHHHHHHHH
Confidence 67777777777 78888888988888888764
No 110
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=1.5e-05 Score=55.25 Aligned_cols=44 Identities=30% Similarity=0.592 Sum_probs=36.9
Q ss_pred CCccccccccccc-CCCeecccC-----CcchHHhHhcCC------CCCCCCcccc
Q 020453 22 GPLSCMICQALLF-ECSKCTPCS-----HVYCKACISRFK------DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~-~~p~~l~C~-----h~fC~~Cl~~~~------~CP~Cr~~~~ 65 (326)
+...|+||++.+. .++..+||. |.|-..||.+|. .||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 5678999998732 358899996 999999999994 4999999876
No 111
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.63 E-value=0.0016 Score=56.35 Aligned_cols=113 Identities=9% Similarity=0.089 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453 167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 246 (326)
Q Consensus 167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~ 246 (326)
.+...+.+....++...+..+++.+........... ........+++.+...++++++|+.+|++++++.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~----~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~- 230 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE----EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-N- 230 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc----cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-C-
Confidence 445566777788999999999998887766655321 1112577899999999999999999999999987431 1
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHh
Q 020453 247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVA-VDGFQEAIKRLESL 291 (326)
Q Consensus 247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~l 291 (326)
. ...++..+.++|.++..+|++++| ..+|++++.+.+.+
T Consensus 231 ~------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 231 S------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp B------CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred c------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 1 113577889999999999999999 78899999999876
No 112
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.61 E-value=0.0011 Score=58.99 Aligned_cols=166 Identities=13% Similarity=0.076 Sum_probs=95.8
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+... +. ..|.+...+..++.+....++...++.+++.+... .+..
T Consensus 74 ~~~~~g~~~~A~~~~~~a-------l~-------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~--- 132 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAA-------IL-------QDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL----QPNN--- 132 (365)
T ss_dssp HHHHHTCHHHHHHHHHHH-------HH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC---
T ss_pred HHHHCCCHHHHHHHHHHH-------HH-------hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCC---
Confidence 567788888888777533 11 12233445556667777778888888777766544 2222
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC----------------Cc------hhh--------
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV----------------PS------QVL-------- 255 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~----------------~~------~~~-------- 255 (326)
......++.+....|++++|+..|++++++........... .. ..+
T Consensus 133 ----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 208 (365)
T 4eqf_A 133 ----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG 208 (365)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC
T ss_pred ----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc
Confidence 23456778888888888888888888877543321111000 00 000
Q ss_pred h--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 256 D--VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 256 ~--la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
. ....+.++|.++..+|++++|++.|++++.+ .|.++.+..++ +.++...|++.+++..|+
T Consensus 209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV------RPEDYSLWNRL--GATLANGDRSEEAVEAYT 271 (365)
T ss_dssp SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence 0 1345566778888888888888877776654 33344444444 444444444444444443
No 113
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0035 Score=52.06 Aligned_cols=136 Identities=21% Similarity=0.195 Sum_probs=89.1
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+...- ... .....+...+.+....++...++...+.+...........
T Consensus 14 ~~~~~~~~~~A~~~~~~a~-------~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--- 75 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAW-------ELH--------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY--- 75 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHH-------HHS--------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH---
T ss_pred HHHHhccHHHHHHHHHHHH-------Hhh--------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch---
Confidence 4566788888887775332 111 1123444556677778888999888888777665544322
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------------------HHHhhcCCCCCchhhhHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR-------------------RDAVKRHSNVPSQVLDVAVSLAKVAD 266 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~-------------------~~~~~~~~~~~~~~~~la~~l~~l~~ 266 (326)
.........++.+....+++++|+..|++++++. +...... ......+.++|.
T Consensus 76 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~ 147 (258)
T 3uq3_A 76 -KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN-------PEKAEEARLEGK 147 (258)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcC-------cchHHHHHHHHH
Confidence 2234567789999999999999999999998831 1111111 123455666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHH
Q 020453 267 VDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~~~~ 287 (326)
++...|++++|+..|++++.+
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~ 168 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKR 168 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc
Confidence 788888888888777776653
No 114
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.57 E-value=0.0036 Score=55.80 Aligned_cols=145 Identities=15% Similarity=0.094 Sum_probs=97.5
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+... +...+.... ......+...+......++...+....+.+.......+.
T Consensus 23 ~~~~~g~~~~A~~~~~~a-------l~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 88 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLA-------LEELPPGWF--YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV----- 88 (373)
T ss_dssp HHHHTTCHHHHHHHHHHH-------HHTCCTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHCCCHHHHHHHHHHH-------HHcCCCCch--hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc-----
Confidence 455678888876655422 222211111 011123344455666678888888888888777665443
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
..........++.+....|++++|+..|++++++.+....... ...+..+.+++.++..+|++++|..++++++
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL------PMHEFLVRIRAQLLWAWARLDEAEASARSGI 162 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1223455678999999999999999999999998775432211 1345667789999999999999999999998
Q ss_pred HHHHH
Q 020453 286 KRLES 290 (326)
Q Consensus 286 ~~~~~ 290 (326)
.+...
T Consensus 163 ~~~~~ 167 (373)
T 1hz4_A 163 EVLSS 167 (373)
T ss_dssp HHTTT
T ss_pred HHhhc
Confidence 87654
No 115
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.54 E-value=0.00036 Score=54.63 Aligned_cols=94 Identities=11% Similarity=-0.042 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 289 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 289 (326)
....-.++......|++++|+..|++++++ .+.+ ...+.++|.++..+|++++|++.|++++.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~P~~-------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-- 99 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-------DFYN-------VDYIMGLAAIYQIKEQFQQAADLYAVAFAL-- 99 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence 345667888888889999999999888665 2332 345677888889999988888888877654
Q ss_pred HhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 290 SLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 290 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+|+++....++ +..+..+|++.++...|++
T Consensus 100 ----~P~~~~~~~~l--g~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 100 ----GKNDYTPVFHT--GQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp ----SSSCCHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred ----CCCCcHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 56666677777 7888888888888777764
No 116
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00037 Score=51.95 Aligned_cols=92 Identities=14% Similarity=0.067 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
.....++......+++++|+..|++++++. +.+ ...+.++|.++..+|++++|+..+++++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--- 67 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-------PED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEK--- 67 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence 344556666666667777777666665541 111 234555666666666666666666555443
Q ss_pred hhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
+|.+.....++ +.++..+|++.+++..|+
T Consensus 68 ---~p~~~~~~~~l--g~~~~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 68 ---DPNFVRAYIRK--ATAQIAVKEYASALETLD 96 (126)
T ss_dssp ---CTTCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred ---CCCcHHHHHHH--HHHHHHHhCHHHHHHHHH
Confidence 34444444444 555555555555544443
No 117
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.50 E-value=0.0019 Score=57.30 Aligned_cols=92 Identities=13% Similarity=0.109 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
....++.+....|++++|+..|++++++. +. ....+.++|.++..+|++++|+..|++++.+
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 276 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVR-------PE-------DYSLWNRLGATLANGDRSEEAVEAYTRALEI---- 276 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence 45667888888899999999998887652 22 1346677888888888888888888777654
Q ss_pred hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+|+++.+..++ +.++..+|++.++...|++
T Consensus 277 --~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 277 --QPGFIRSRYNL--GISCINLGAYREAVSNFLT 306 (365)
T ss_dssp --CTTCHHHHHHH--HHHHHHHTCCHHHHHHHHH
T ss_pred --CCCchHHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence 45555556556 6666666666666655543
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.49 E-value=0.0033 Score=55.84 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCC----ChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 162 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM----DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL 237 (326)
Q Consensus 162 ~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~----~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl 237 (326)
+.....+...+......++...++..++.+......... ...++.........+++.+...++++++|+..|++++
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333445556667777888999998888877766443321 1123444556788899999999999999999999998
Q ss_pred HHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHH
Q 020453 238 NVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHL 317 (326)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 317 (326)
++. +. ....+.++|.++..+|++++|+..|++++.+ +|.+.....++ +.++..++++.
T Consensus 224 ~~~-------p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l--~~~~~~~~~~~ 281 (336)
T 1p5q_A 224 ELD-------SN-------NEKGLSRRGEAHLAVNDFELARADFQKVLQL------YPNNKAAKTQL--AVCQQRIRRQL 281 (336)
T ss_dssp HHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHH--HHHHHHHHHHH
T ss_pred HhC-------CC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHH--HHHHHHHHHHH
Confidence 762 22 2456788999999999999999999988764 56666666666 66666666655
Q ss_pred hc
Q 020453 318 NQ 319 (326)
Q Consensus 318 ~~ 319 (326)
++
T Consensus 282 ~a 283 (336)
T 1p5q_A 282 AR 283 (336)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 119
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.48 E-value=0.00042 Score=63.95 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 020453 168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 247 (326)
Q Consensus 168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~ 247 (326)
...++.+....|++.+++..++.+.++......... .........+++.+...+|++++|+.+|++++++.+......
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~--~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA--EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC--TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc--chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 445566777789999999999988877655443222 122345678999999999999999999999999988754433
Q ss_pred CCCCchhhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHH
Q 020453 248 SNVPSQVLDVAVSLAKVADVDRS--IGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 248 ~~~~~~~~~la~~l~~l~~~~~~--~~~~~~a~~~~~~~~~~ 287 (326)
.. +.+..+.++|.++.. .+++++|++.|++++.+
T Consensus 132 ~~------~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 132 RI------ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167 (472)
T ss_dssp CC------CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred ch------hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 22 235566667655544 45688999999888764
No 120
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.48 E-value=0.0077 Score=47.31 Aligned_cols=116 Identities=11% Similarity=0.031 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453 168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD-LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 246 (326)
Q Consensus 168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~-~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~ 246 (326)
+...+......+++..++..++.+.+......... ......-.....+++.+...+|++++|+..|.+++++.....+-
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 33445555678888999988888887765422110 01122234477899999999999999999999999986665555
Q ss_pred CCCCCchhhhHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 247 HSNVPSQVLDVAVSL----AKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 247 ~~~~~~~~~~la~~l----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
.+. .+..+ .+.|.++..+|++++|+..|++++++--+
T Consensus 94 ~pd-------~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 94 NQD-------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp TST-------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCc-------hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 553 34455 89999999999999999999999998744
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.44 E-value=0.0024 Score=47.92 Aligned_cols=111 Identities=12% Similarity=0.091 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 163 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 242 (326)
Q Consensus 163 ~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~ 242 (326)
...+.+...|......++...++..++.+.+. .+.. .....+++.+...+|++++|+..|++++++
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~----~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----DPEN-------AILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 34445555677777889999998888776643 2322 235678899999999999999999999876
Q ss_pred HhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhc
Q 020453 243 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRC 304 (326)
Q Consensus 243 ~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~ 304 (326)
.+.+ ...+.++|.++..+|++++|++.|++++++ +|++..+..++
T Consensus 77 ----~p~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l------~P~~~~a~~~l 121 (126)
T 4gco_A 77 ----DSKF-------IKGYIRKAACLVAMREWSKAQRAYEDALQV------DPSNEEAREGV 121 (126)
T ss_dssp ----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH
T ss_pred ----hhhh-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CcCCHHHHHHH
Confidence 2222 456788999999999999999999988764 67776655544
No 122
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.43 E-value=2.1e-05 Score=55.70 Aligned_cols=42 Identities=26% Similarity=0.714 Sum_probs=35.1
Q ss_pred ccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc
Q 020453 25 SCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK 66 (326)
Q Consensus 25 ~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~ 66 (326)
.|++|.-.+..-.+++||.|.||.+|+..|+ .||.|+..+..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5888988755568999999999999997653 49999998874
No 123
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.43 E-value=0.0015 Score=56.62 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
.....++.+....+++++|+..|++++++......... .......+.++|.++..+|++++|+..+++++.+
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--- 265 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT-----VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--- 265 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT-----TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc-----ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh---
Confidence 34567888889999999999999999887544222111 0122456778899999999999999999888764
Q ss_pred hhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
.|.+..+..++ +.++..+|+..++...|++|
T Consensus 266 ---~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 266 ---IPQNASTYSAI--GYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp ---STTCSHHHHHH--HHHHHHHTCHHHHHHHHHTT
T ss_pred ---CccchHHHHHH--HHHHHHhccHHHHHHHHHHH
Confidence 45566666667 77777778888777777654
No 124
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.38 E-value=0.0012 Score=51.28 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
..-.++.+....+++++|+..|++++++ .+.+ ...+.++|.++..+|++++|+..|++++++
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~-------~p~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---- 94 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINV-------QERD-------PKAHRFLGLLYELEENTDKAVECYRRSVEL---- 94 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHcCchHHHHHHHHHHHHh----
Confidence 3346899999999999999999999876 2322 456788999999999999999999888764
Q ss_pred hcCCCchhHHhhccchhhhHHHHhH
Q 020453 292 TLKPEEAGLEQRCWNSSTTNFQKNH 316 (326)
Q Consensus 292 ~~~p~~~~~~~~~~~~~~~~~~~~~ 316 (326)
+|.++.+..++ +.++..+++.
T Consensus 95 --~p~~~~~~~~l--a~~~~~~~~~ 115 (150)
T 4ga2_A 95 --NPTQKDLVLKI--AELLCKNDVT 115 (150)
T ss_dssp --CTTCHHHHHHH--HHHHHHHCSS
T ss_pred --CCCCHHHHHHH--HHHHHHcCCh
Confidence 45555555545 4444444433
No 125
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.37 E-value=0.00057 Score=53.60 Aligned_cols=29 Identities=7% Similarity=0.170 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 259 VSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
..+.++|.++..+|++++|+..|++++.+
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34455555555555555555555555443
No 126
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.35 E-value=0.0039 Score=55.07 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
.....++.+....|++++|+..|++++++ .+. ....+.++|.++..+|++++|+..|++++.+
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 280 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSV-------RPN-------DYLLWNKLGATLANGNQSEEAVAAYRRALEL--- 280 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CcC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 34566788888889999999999888765 122 1346677888888888888888888877654
Q ss_pred hhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.|....+..++ +.++..+|++.++...|++
T Consensus 281 ---~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 281 ---QPGYIRSRYNL--GISCINLGAHREAVEHFLE 310 (368)
T ss_dssp ---CTTCHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred ---CCCcHHHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence 45555566666 6666677777776666554
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0089 Score=44.12 Aligned_cols=112 Identities=10% Similarity=0.054 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 020453 168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 247 (326)
Q Consensus 168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~ 247 (326)
+...+......++...++..++.+... .+.. .....+++.+...++++++|+..|++++++ .
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~ 68 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR----APED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEK-------D 68 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------C
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------C
Confidence 344455556778888888777766544 2222 245678899999999999999999999876 2
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhc
Q 020453 248 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRC 304 (326)
Q Consensus 248 ~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~ 304 (326)
+.+ ...+.++|.++..+|++++|+..|++++.+-......|.+..+...+
T Consensus 69 p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 69 PNF-------VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred CCc-------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 221 45677899999999999999999999999876554456665555444
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.31 E-value=0.006 Score=47.48 Aligned_cols=103 Identities=10% Similarity=0.057 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 161 CSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 240 (326)
Q Consensus 161 C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~ 240 (326)
-|.+.+.+..++......++...++..++.+... .+... .....++.+...+|++++|+..|++++++
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~P~~~-------~~~~~lg~~~~~~g~~~~Ai~~~~~al~l- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----DFYNV-------DYIMGLAAIYQIKEQFQQAADLYAVAFAL- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHHccHHHHHHHHHHHHhh-
Confidence 3555556666777777888988888887765543 33333 34568999999999999999999999776
Q ss_pred HHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 241 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 241 ~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
.+.+ ...+.++|.++..+|++++|+..|++++.+-
T Consensus 100 ------~P~~-------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 100 ------GKND-------YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ------SSSC-------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ------CCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2333 2457789999999999999999999888753
No 129
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.29 E-value=0.00076 Score=60.99 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC--CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 208 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN--VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 208 ~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~--~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
........++......+++++|+..|++++++.......... ........+..+.++|.++..+|++++|++++++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 345567788999999999999999999999976553211000 000112356778889999999999999998888777
Q ss_pred HHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 286 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 286 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
++ +|+++....++ +..+..++++.+++..|++
T Consensus 301 ~~------~p~~~~a~~~l--g~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 301 EI------DPSNTKALYRR--AQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp TT------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred Hh------CchhHHHHHHH--HHHHHHccCHHHHHHHHHH
Confidence 53 45565566666 6666666777666666654
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.26 E-value=0.00039 Score=61.93 Aligned_cols=112 Identities=10% Similarity=0.015 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC-CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~-~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~ 284 (326)
..........++.+....+++++|+..|++++++.........+. .......+..+.++|.++..+|++++|+..|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344566778899999999999999999999988743211000000 0011123567889999999999999999999988
Q ss_pred HHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 285 IKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 285 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+.+ +|.++....++ +..+..++++.+++..|++
T Consensus 223 l~~------~p~~~~a~~~l--g~~~~~~g~~~~A~~~~~~ 255 (336)
T 1p5q_A 223 LEL------DSNNEKGLSRR--GEAHLAVNDFELARADFQK 255 (336)
T ss_dssp HHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred HHh------CCCcHHHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence 765 56676777777 7788888888888777765
No 131
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.24 E-value=0.014 Score=46.89 Aligned_cols=133 Identities=11% Similarity=0.054 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCC-----ChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM-----DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 240 (326)
Q Consensus 166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~-----~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~ 240 (326)
..+...+......++...++..+..+......... ..............+++.+....+++++|+..|++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI- 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence 34444556666778888888887776654322110 000111222356778999999999999999999999876
Q ss_pred HHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcC
Q 020453 241 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQL 320 (326)
Q Consensus 241 ~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (326)
.+. ....+.++|.++..+|++++|+..|++++.+ .|.+..+...+ ..+...+++..+..
T Consensus 118 ------~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l--~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 ------DKN-------NVKALYKLGVANMYFGFLEEAKENLYKAASL------NPNNLDIRNSY--ELCVNKLKEARKKD 176 (198)
T ss_dssp ------STT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHH--HHHHHHHHHHHC--
T ss_pred ------Ccc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHH--HHHHHHHHHHHHHH
Confidence 222 2456778899999999999999999888765 56666666666 66666666665554
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.20 E-value=0.0018 Score=50.17 Aligned_cols=61 Identities=15% Similarity=0.016 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
..++.+....|++++|+..|++++++ .+.+ ...+.++|.++..+|++++|+..|++++.+.
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~al~l-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSYGAVM-------DIXE-------PRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc-------CCCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34455555555555555555555443 1111 1234455566666666666665555554443
No 133
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0035 Score=52.05 Aligned_cols=137 Identities=15% Similarity=0.194 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453 167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 246 (326)
Q Consensus 167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~ 246 (326)
.+...+.+....++...++.+++.+.... .. ......++.+....+++++|+..|++++++......
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~- 73 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-----KD-------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA- 73 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----CC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh-----cc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc-
Confidence 34445566667788888888887766543 11 234567888999999999999999999887554211
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------------------HHHh-hcCCCchhHHhhccc
Q 020453 247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR-------------------LESL-TLKPEEAGLEQRCWN 306 (326)
Q Consensus 247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~l-~~~p~~~~~~~~~~~ 306 (326)
.....+..+..+|.++..+|++++|++.+++++.+ +++. ..+|..+.+...+
T Consensus 74 ------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 145 (258)
T 3uq3_A 74 ------DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLE-- 145 (258)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--
T ss_pred ------chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHH--
Confidence 11134677888999999999999999999999883 2222 2344444444444
Q ss_pred hhhhHHHHhHHhcCcccc
Q 020453 307 SSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~ 324 (326)
+..+...+++.+++..|+
T Consensus 146 ~~~~~~~~~~~~A~~~~~ 163 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYT 163 (258)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHH
Confidence 555555555555555444
No 134
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.18 E-value=0.011 Score=45.96 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCC----CChh---HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLP----MDDL---EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 240 (326)
Q Consensus 168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~----~~~~---~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~ 240 (326)
+...+......++...++..+..+........ +... .+.........+++.+...++++++|+..|.+++++
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~- 92 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR- 92 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-
Confidence 34445555677888889888888876643221 1111 123444567788999999999999999999999877
Q ss_pred HHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCch-hHHhhccchhhhHHHHhHHhc
Q 020453 241 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA-GLEQRCWNSSTTNFQKNHLNQ 319 (326)
Q Consensus 241 ~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~~~ 319 (326)
.+. .+..+.++|.++..+|++++|+..|++++.+ +|.+. .+...+ ..+...++.+.+.
T Consensus 93 ------~p~-------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~~l--~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 93 ------EET-------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN------HPAAASVVAREM--KIVTERRAEKKAD 151 (162)
T ss_dssp ------STT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CGGGHHHHHHHH--HHHHHHHHHHTTS
T ss_pred ------CCc-------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCCCHHHHHHHH--HHHHHHHHHHHHH
Confidence 232 2456778999999999999999999888765 45555 455555 4454555544433
No 135
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.16 E-value=0.0095 Score=48.96 Aligned_cols=149 Identities=17% Similarity=0.160 Sum_probs=96.4
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+..+ +. .-|.....+..++.+....++...++...+.+.. +.+....+
T Consensus 51 ~~~~~~~~~~A~~~~~~a-------l~-------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~ 112 (228)
T 4i17_A 51 CADNIKKYKEAADYFDIA-------IK-------KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIK----AVPGNATI 112 (228)
T ss_dssp HHHHTTCHHHHHHHHHHH-------HH-------TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHH
T ss_pred HHHHhhcHHHHHHHHHHH-------HH-------hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCcHHH
Confidence 456678888887766533 11 1222334555666777788888888877766554 34555666
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCH-----------
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE----------- 274 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~----------- 274 (326)
...+......+|.+....+++++|+..|++++++ .+.+ ..+..+.++|.++..+|+.
T Consensus 113 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~~-----~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~ 180 (228)
T 4i17_A 113 EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-------TSKK-----WKTDALYSLGVLFYNNGADVLRKATPLASS 180 (228)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------SCHH-----HHHHHHHHHHHHHHHHHHHHHHHHGGGTTT
T ss_pred HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-------CCCc-----ccHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 6777778889999999999999999999998764 2210 0233444555555544443
Q ss_pred ---------HHHHHHHHHHHHHHHHh-hcCCCchhHHhhc
Q 020453 275 ---------DVAVDGFQEAIKRLESL-TLKPEEAGLEQRC 304 (326)
Q Consensus 275 ---------~~a~~~~~~~~~~~~~l-~~~p~~~~~~~~~ 304 (326)
..+...|++|+..+++. ...|++..+...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 220 (228)
T 4i17_A 181 NKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ 220 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 44556667777777776 6678776655433
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.11 E-value=0.00074 Score=54.75 Aligned_cols=108 Identities=8% Similarity=-0.004 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCch-h-----hhHHHHHHHHHHHHHhcCCHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ-V-----LDVAVSLAKVADVDRSIGNEDVAVD 279 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~-~-----~~la~~l~~l~~~~~~~~~~~~a~~ 279 (326)
..........++......+++++|+..|.+++++.... ...... . .-.+..+.++|.++..+|++++|+.
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 109 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT----EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID 109 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC----TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 33445567788999999999999999999998753221 100000 0 0023667889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 280 GFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 280 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.+++++.+ +|.+.....++ +..+..++++.+++..|++
T Consensus 110 ~~~~al~~------~p~~~~~~~~l--g~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 110 HASKVLKI------DKNNVKALYKL--GVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHH------STTCHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHh------CcccHHHHHHH--HHHHHHcccHHHHHHHHHH
Confidence 99988765 56666666666 7777777888777776654
No 137
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.11 E-value=0.011 Score=47.79 Aligned_cols=124 Identities=10% Similarity=0.055 Sum_probs=66.4
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+...- ... +.....+..++.+....++...+..+.+.+... .+..
T Consensus 17 ~~~~~~~~~~A~~~~~~~~-------~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~--- 75 (225)
T 2vq2_A 17 EYMRGQDYRQATASIEDAL-------KSD-------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI----KPDS--- 75 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHH-------HHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC---
T ss_pred HHHHHhhHHHHHHHHHHHH-------HhC-------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCC---
Confidence 3456778888877664321 111 112233344455555666766666666554432 1211
Q ss_pred HHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~-~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~ 284 (326)
......++.+.... +++++|+..|+++++ ....+ .....+..+|.++...|++++|+..++++
T Consensus 76 ----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 139 (225)
T 2vq2_A 76 ----AEINNNYGWFLCGRLNRPAESMAYFDKALA-----DPTYP-------TPYIANLNKGICSAKQGQFGLAEAYLKRS 139 (225)
T ss_dssp ----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-----STTCS-------CHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-----CcCCc-------chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12334566667777 777777777777654 00111 12334555666666666666666666655
Q ss_pred HH
Q 020453 285 IK 286 (326)
Q Consensus 285 ~~ 286 (326)
+.
T Consensus 140 ~~ 141 (225)
T 2vq2_A 140 LA 141 (225)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 138
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.10 E-value=0.0018 Score=48.58 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
...++......+++++|+..|.+++++. +. ....+.++|.++..+|++++|+..+++++.
T Consensus 12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 12 LKEQGNRLFVGRKYPEAAACYGRAITRN-------PL-------VAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhC-------cC-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3455555556666666666666655431 11 123344455555555555555555544443
No 139
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.09 E-value=0.0074 Score=55.99 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCC----ChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 162 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM----DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL 237 (326)
Q Consensus 162 ~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~----~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl 237 (326)
+.....+...+......+++..++..+..+......... ...+..........+++.+...++++++|+..|.+++
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 334445556667777788999999888888776544321 1122344556778899999999999999999999998
Q ss_pred HHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHH
Q 020453 238 NVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHL 317 (326)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 317 (326)
++. +. .+..+.++|.++..+|++++|+..|++++.+ +|.+..+...+ +.++..++++.
T Consensus 345 ~~~-------p~-------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l--~~~~~~~~~~~ 402 (457)
T 1kt0_A 345 GLD-------SA-------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV------NPQNKAARLQI--SMCQKKAKEHN 402 (457)
T ss_dssp HHS-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------C----CHHHHH--HHHHHHHHHHH
T ss_pred hcC-------Cc-------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHHHHHH
Confidence 762 22 2456788999999999999999999887653 45555555555 55555565544
Q ss_pred h
Q 020453 318 N 318 (326)
Q Consensus 318 ~ 318 (326)
+
T Consensus 403 ~ 403 (457)
T 1kt0_A 403 E 403 (457)
T ss_dssp H
T ss_pred H
Confidence 3
No 140
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.003 Score=45.25 Aligned_cols=93 Identities=12% Similarity=0.097 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
.....++......+++++|+..|++++++ .+.+ ...+.++|.++..+|++++|++.+++++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-------QPQN-------PVGYSNKAMALIKLGEYTQAIQMCQQGLRY--- 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence 34567888999999999999999999876 2221 456788999999999999999988877643
Q ss_pred hhcCCCc------hhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 291 LTLKPEE------AGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 291 l~~~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.|++ ..+..++ +..+..++....++..|++
T Consensus 68 ---~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 68 ---TSTAEHVAIRSKLQYRL--ELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp ---CSSTTSHHHHHHHHHHH--HHHHHHHHCCCCCSSSSSS
T ss_pred ---CCCccHHHHHHHHHHHH--HHHHHHHHhHhhhHhHHHH
Confidence 4444 3344444 5555566655555555543
No 141
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.08 E-value=0.0027 Score=50.34 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR--- 287 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~--- 287 (326)
....++|.+....|++++|+..|++++++ .+.+ ...+..+|.++..+|++++|+..++++...
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 71 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKA-------DPNN-------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch
Confidence 45678999999999999999999998865 2222 334556666666667766666666554332
Q ss_pred ------------------------HHHh-hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 288 ------------------------LESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 288 ------------------------~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+++. ...|.+..+...+ +..+..+|++.+++..|++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~l--g~~~~~~g~~~~A~~~~~~ 132 (184)
T 3vtx_A 72 SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKL--GLVYDSMGEHDKAIEAYEK 132 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH--HHHHHHhCCchhHHHHHHH
Confidence 1111 2345555555555 6666666666666665553
No 142
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.07 E-value=0.007 Score=54.13 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
..++.+....|++++|+..|++++++ .+. ....+.++|.++...|++++|+..|++++.
T Consensus 173 ~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 231 (388)
T 1w3b_A 173 SNLGCVFNAQGEIWLAIHHFEKAVTL-------DPN-------FLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-------CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444555555555555555555432 111 134556677777777777777776665544
No 143
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.02 E-value=0.00022 Score=51.74 Aligned_cols=34 Identities=18% Similarity=0.493 Sum_probs=28.6
Q ss_pred CCcccccccccccCCCee--cccCCcchHHhHhc-CC
Q 020453 22 GPLSCMICQALLFECSKC--TPCSHVYCKACISR-FK 55 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~--l~C~h~fC~~Cl~~-~~ 55 (326)
+++.|++|.+.++.+|+. ++|+|+||..|+.. +.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 578999999753566888 99999999999997 53
No 144
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.01 E-value=0.011 Score=52.58 Aligned_cols=141 Identities=14% Similarity=0.050 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 020453 168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 247 (326)
Q Consensus 168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~ 247 (326)
+...+......++...+..+.+.+... ... .. ..........++.+....|++++|...|++++++......
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~~~-~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 88 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEE---LPP-GW--FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-- 88 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---CCT-TC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc---CCC-Cc--hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc--
Confidence 333445555667777777766655542 221 11 1223446678899999999999999999999988765211
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc--CCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 248 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL--KPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 248 ~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
....+..+.+++.++..+|++++|+..+++++.+.+.... +|.......++ +.++...|+..++...|+
T Consensus 89 ------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~ 159 (373)
T 1hz4_A 89 ------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR--AQLLWAWARLDEAEASAR 159 (373)
T ss_dssp ------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH--HHHHHHhcCHHHHHHHHH
Confidence 1234667889999999999999999999999999887622 23334445555 566666666666655554
No 145
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.00 E-value=0.0011 Score=61.94 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=96.5
Q ss_pred HHhhhcCH-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhH
Q 020453 126 RAFRAQNV-ESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE 204 (326)
Q Consensus 126 ~~~~~~~~-~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~ 204 (326)
..+..|++ ++|...+... +.. -+.+...+..++.+....++...+...++.+... .+.
T Consensus 111 ~~~~~g~~~~~A~~~~~~a-------l~~-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~--- 169 (474)
T 4abn_A 111 ALNVTPDYSPEAEVLLSKA-------VKL-------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH----CKN--- 169 (474)
T ss_dssp HHTSSSSCCHHHHHHHHHH-------HHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----CCC---
T ss_pred HHHhccccHHHHHHHHHHH-------Hhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC---
Confidence 44557778 8877766533 221 2223345556667777788888887776665432 232
Q ss_pred HHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhc----
Q 020453 205 IIHTLSVSLNKIGDLKYYG---------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI---- 271 (326)
Q Consensus 205 ~~~~i~~~~~~l~~l~~~~---------~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~---- 271 (326)
......++.+.... +++++|+..|++++++ .+.+ ...+.++|.++..+
T Consensus 170 -----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 170 -----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-------DVLD-------GRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp -----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHHHHhh
Confidence 13556788888777 7788888888887765 3332 34567778888777
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhhcCC---CchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 272 ----GNEDVAVDGFQEAIKRLESLTLKP---EEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 272 ----~~~~~a~~~~~~~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
|++++|+..|++++.+ +| .++.+..++ +..+..+|++.+++..|++
T Consensus 231 ~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~l--g~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKV------DRKASSNPDLHLNR--ATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHH------CGGGGGCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHh------CCCcccCHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 8888888888887765 33 445555555 5666666666666555543
No 146
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.00 E-value=0.0039 Score=55.84 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
....++.++..+|++++|++.|++++. .+|..+....++ +..+...|+..+++..|++
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIE------TQPNFAVAWSNL--GCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH------HCTTCHHHHHHH--HHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 345566677777777777766665543 356666666666 6666666667666666654
No 147
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.99 E-value=0.0034 Score=54.32 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hc
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TL 293 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~ 293 (326)
.++.+....+++++|+..|++++++ .+. ....+..+|.++...|++++|+..+++++.+.... ..
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~-------~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 229 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSI-------APE-------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh-------CCC-------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc
Confidence 4666666677777777777766543 222 14567788999999999999999999999988766 21
Q ss_pred --CCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 294 --KPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 294 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.|..+.+..++ +..+..+|++.++...|++
T Consensus 230 ~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 230 VTVDKWEPLLNNL--GHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp CTTTTCCHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHH--HHHHHHhcCHHHHHHHHHH
Confidence 14445566666 6777777777777666654
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.98 E-value=0.0032 Score=46.78 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=68.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 294 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~ 294 (326)
.++......|++++|+..|++++++ .+.+ ...+..+|.++..+|++++|+..|++++. .+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~-------~P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~------l~ 81 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK-------EPER-------EEAWRSLGLTQAENEKDGLAIIALNHARM------LD 81 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-------STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hC
Confidence 4566777889999999999988764 3332 45567789999999999999988887665 36
Q ss_pred CCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 295 PEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 295 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
|++.....++ +..+..+|++.+++..|++
T Consensus 82 P~~~~~~~~l--a~~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 82 PKDIAVHAAL--AVSHTNEHNANAALASLRA 110 (121)
T ss_dssp TTCHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 7777777777 8888888888888777654
No 149
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.97 E-value=0.0011 Score=61.76 Aligned_cols=113 Identities=10% Similarity=0.025 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC-CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN-VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~-~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~ 284 (326)
.........+++......++|++|+..|.+++++.........+ ........+..+.++|.++..+|++++|+..|+++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44456677889999999999999999999999865321100000 00011123577889999999999999999999988
Q ss_pred HHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 285 IKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 285 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
+.+ +|.++....++ +..+..++++.+|+..|++|
T Consensus 344 l~~------~p~~~~a~~~~--g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 344 LGL------DSANEKGLYRR--GEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HHH------STTCHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred Hhc------CCccHHHHHHH--HHHHHHccCHHHHHHHHHHH
Confidence 764 46666667667 77777888888887777653
No 150
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.96 E-value=0.011 Score=51.98 Aligned_cols=130 Identities=18% Similarity=0.123 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453 167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 246 (326)
Q Consensus 167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~ 246 (326)
.+..++.+....++...++...+.+... .+.. ......++.+....|++++|+..|++++++.
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------ 281 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSV----RPND-------YLLWNKLGATLANGNQSEEAVAAYRRALELQ------ 281 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 3444556666778888888777766544 2222 2356788999999999999999999998752
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-h----cCCCchhHHhhccchhhhHHHHhHHhcCc
Q 020453 247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-T----LKPEEAGLEQRCWNSSTTNFQKNHLNQLP 321 (326)
Q Consensus 247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (326)
+. ....+.++|.++..+|++++|+..|++++.+.... . .++....+...+ +..+..+|+...+..
T Consensus 282 -~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 282 -PG-------YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL--RLALSMLGQSDAYGA 351 (368)
T ss_dssp -TT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHH--HHHHHHHTCGGGHHH
T ss_pred -CC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHH--HHHHHHhCChHhHHH
Confidence 22 24567889999999999999999999999876543 1 122334455555 556666665555443
Q ss_pred cc
Q 020453 322 KF 323 (326)
Q Consensus 322 ~~ 323 (326)
.+
T Consensus 352 ~~ 353 (368)
T 1fch_A 352 AD 353 (368)
T ss_dssp HH
T ss_pred hH
Confidence 33
No 151
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.95 E-value=0.0098 Score=49.41 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=10.2
Q ss_pred HHhhhcCHHHHHHHHH
Q 020453 126 RAFRAQNVESAKSRLS 141 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~ 141 (326)
..+..|++++|...+.
T Consensus 46 ~~~~~~~~~~A~~~~~ 61 (252)
T 2ho1_A 46 GYLQRGNTEQAKVPLR 61 (252)
T ss_dssp HHHHTTCTGGGHHHHH
T ss_pred HHHHcCChHHHHHHHH
Confidence 3455677777766654
No 152
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.94 E-value=0.019 Score=49.94 Aligned_cols=136 Identities=10% Similarity=0.092 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTL-----SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 242 (326)
Q Consensus 168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i-----~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~ 242 (326)
+..++.+....++...+....+.+... .+......... ....-.++.+....+++++|+..|+++++..
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 264 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-- 264 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 334445555666666666665554432 22222211111 1112244777788899999999999887642
Q ss_pred HhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcc
Q 020453 243 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPK 322 (326)
Q Consensus 243 ~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (326)
+.+. ......+..+|.++..+|++++|+..+++++.+ +|++..+...+ +.++..+|+..++...
T Consensus 265 -----~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~g~~~~A~~~ 328 (359)
T 3ieg_A 265 -----PSVA---EYTVRSKERICHCFSKDEKPVEAIRICSEVLQM------EPDNVNALKDR--AEAYLIEEMYDEAIQD 328 (359)
T ss_dssp -----CSSH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHH
T ss_pred -----CCch---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CcccHHHHHHH--HHHHHHcCCHHHHHHH
Confidence 2211 112344667888899999998888888877664 45566666666 6666667777776666
Q ss_pred ccc
Q 020453 323 FRS 325 (326)
Q Consensus 323 ~~~ 325 (326)
|++
T Consensus 329 ~~~ 331 (359)
T 3ieg_A 329 YEA 331 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 153
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.93 E-value=0.0016 Score=47.89 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 289 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 289 (326)
......++.+....+++++|+..|+++++.. +.+ ...+.++|.++...|++++|+.++++++.+..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-------PTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------Ccc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 3456778888999999999999999997652 221 35677889999999999999999999988765
Q ss_pred Hh-hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 290 SL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 290 ~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.. ...+....+..++ +..+..++++.++...|++
T Consensus 70 ~~~~~~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 70 ENREDYRQIAKAYARI--GNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HSTTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHH--HHHHHHhccHHHHHHHHHH
Confidence 32 1000003344445 5555566666666655543
No 154
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.93 E-value=0.021 Score=46.81 Aligned_cols=152 Identities=13% Similarity=0.026 Sum_probs=98.1
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+... +...+. ....+..++.+....++...++...+.+... .+....
T Consensus 14 ~~~~~g~~~~A~~~~~~a-------l~~~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~~- 74 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERA-------LKENPQ-------DPEALYWLARTQLKLGLVNPALENGKTLVAR----TPRYLG- 74 (217)
T ss_dssp HHHHTTCHHHHHHHHHHH-------HTTSSS-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHH-
T ss_pred HHHHcCCHHHHHHHHHHH-------HHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHH-
Confidence 356678888887766532 222222 2344555667777788888887776655543 343332
Q ss_pred HHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCH
Q 020453 206 IHTLSVSLNKIGDLKYYG-----------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE 274 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~-----------~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~ 274 (326)
....++.+.... |++++|+..|++++++ .+.+ ...+.++|.++..+|++
T Consensus 75 ------a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~P~~-------~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 75 ------GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-------NPRY-------APLHLQRGLVYALLGER 134 (217)
T ss_dssp ------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-------Cccc-------HHHHHHHHHHHHHcCCh
Confidence 334566666666 7888888888887665 3332 35667889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 275 DVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 275 ~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
++|+..|++++++- +++.+..++ +.++..+|++.+++..|++
T Consensus 135 ~~A~~~~~~al~~~-------~~~~~~~~l--a~~~~~~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 135 DKAEASLKQALALE-------DTPEIRSAL--AELYLSMGRLDEALAQYAK 176 (217)
T ss_dssp HHHHHHHHHHHHHC-------CCHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-------cchHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 99999999888763 233444555 6666666666666555543
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.93 E-value=0.0047 Score=47.01 Aligned_cols=61 Identities=20% Similarity=0.104 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
..++.+....+++++|+..|++++++ .+.+ ...+.++|.++..+|++++|+..|++++.+.
T Consensus 56 ~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 56 LGLGACRQSLGLYEQALQSYSYGALM-------DINE-------PRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc-------CCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34455555555555555555555443 1111 1234455666666666666666666555443
No 156
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.92 E-value=0.011 Score=48.61 Aligned_cols=151 Identities=14% Similarity=0.070 Sum_probs=81.6
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+...- ...+ .....+..++.+....++...+..+.+.+.... +...
T Consensus 66 ~~~~~~~~~~A~~~~~~~~-------~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~-- 125 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKAL-------ELDS-------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG----MENG-- 125 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHH-------HHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----CCSH--
T ss_pred HHHHcCCHHHHHHHHHHHH-------HcCC-------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCCH--
Confidence 3455677777766554321 1111 122333344455556677777766665554331 2221
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
.....++.+....+++++|+..|++++++. +.+ ...+..++.++...|++++|+..+++++
T Consensus 126 -----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 126 -----DLFYMLGTVLVKLEQPKLALPYLQRAVELN-------END-------TEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp -----HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------Ccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234567777778888888888888876542 111 2345566777777777777777776655
Q ss_pred HHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453 286 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF 323 (326)
Q Consensus 286 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (326)
.. .|.+..+...+ +.++...++..++...|
T Consensus 187 ~~------~~~~~~~~~~l--a~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 187 EQ------DPGHADAFYNA--GVTYAYKENREKALEML 216 (243)
T ss_dssp HH------CTTCHHHHHHH--HHHHHHTTCTTHHHHHH
T ss_pred Hh------CcccHHHHHHH--HHHHHHccCHHHHHHHH
Confidence 43 33333334334 44444444444443333
No 157
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.91 E-value=0.032 Score=50.14 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCC-----CChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453 167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP-----MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 241 (326)
Q Consensus 167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~-----~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~ 241 (326)
.+...+......++...++..++.+........ ....+..........+++.+...++++++|+..|++++++
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 344455666678888888888887776433210 0011134455677889999999999999999999999864
Q ss_pred HHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhc
Q 020453 242 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQ 319 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 319 (326)
.+. .+..+.++|.++..+|++++|+..|++++++ .|++..+...+ ..+...++++.++
T Consensus 303 -----~p~-------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l------~P~~~~~~~~l--~~~~~~~~~~~~a 360 (370)
T 1ihg_A 303 -----DPS-------NTKALYRRAQGWQGLKEYDQALADLKKAQEI------APEDKAIQAEL--LKVKQKIKAQKDK 360 (370)
T ss_dssp -----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHHHHHHHH
T ss_pred -----Cch-------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHHHHHHHH
Confidence 222 2456788999999999999999999988764 46666666666 6666666665544
No 158
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.0012 Score=60.19 Aligned_cols=139 Identities=12% Similarity=0.013 Sum_probs=98.0
Q ss_pred HhCCchhHhhHHHHHHHHHHhCCC------ChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020453 177 AMGDADAAVAYFADSVEFLMKLPM------DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 250 (326)
Q Consensus 177 ~~h~~H~~~~~~e~~~~~~~~L~~------~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~ 250 (326)
..++..++...+............ ...........+..+|+.+....|++++|+..|.+++++.....+.
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~---- 91 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS---- 91 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH----
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch----
Confidence 456677777666655533222111 1112234445667889999999999999999999998876643221
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 251 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 251 ~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.......+.++.++...|+++.|++++++++.+.......+.-+.+..++ +.++...|++.++...+++
T Consensus 92 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 92 ----KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL--ATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp ----HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH--HHHHHHccChHHHHHHHHH
Confidence 12345567789999999999999999999999988765455556677778 8888888888877766543
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.89 E-value=0.0051 Score=44.99 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
..++.+....+++++|+..|.++++. .+. ....+..+|.++..+|++++|+..+++++.
T Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 50 CNRAAAYSKLGNYAGAVQDCERAICI-------DPA-------YSKAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhc-------Ccc-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34444555555555555555555443 111 123445555666666666666555555443
No 160
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.89 E-value=0.0034 Score=59.80 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 020453 166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 245 (326)
Q Consensus 166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~ 245 (326)
..+..++.+....++...+...++.+.. +.+.. ......++.+....+++++|+..|++++++.
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----- 87 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLA----LHPGH-------PEAVARLGRVRWTQQRHAEAAVLLQQASDAA----- 87 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHT----TSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence 4445556666677777777766665543 23322 2345678889999999999999999988752
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHH---HhHHhcCcc
Q 020453 246 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQ---KNHLNQLPK 322 (326)
Q Consensus 246 ~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 322 (326)
+.+ ...+.++|.++..+|++++|++.|++++++ +|++.....++ +..+..+ +++.++...
T Consensus 88 --p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l--~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 88 --PEH-------PGIALWLGHALEDAGQAEAAAAAYTRAHQL------LPEEPYITAQL--LNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp --TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCCTTHHHHHHH
T ss_pred --CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHhhccccHHHHHHH
Confidence 221 456778899999999999999888877654 45565666666 6666666 666666555
Q ss_pred ccc
Q 020453 323 FRS 325 (326)
Q Consensus 323 ~~~ 325 (326)
|++
T Consensus 151 ~~~ 153 (568)
T 2vsy_A 151 VRA 153 (568)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 161
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.89 E-value=0.012 Score=49.58 Aligned_cols=168 Identities=7% Similarity=-0.064 Sum_probs=100.8
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+... +...+... .....+..++.+....++...++..++.+.... +...
T Consensus 24 ~~~~~g~~~~A~~~~~~~-------l~~~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~----p~~~-- 86 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAV-------FTYGRTHE----WAADAQFYLARAYYQNKEYLLAASEYERFIQIY----QIDP-- 86 (261)
T ss_dssp HHHHTTCHHHHHHHHHHH-------GGGCSCST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCT--
T ss_pred HHHHhCCHHHHHHHHHHH-------HHhCCCCc----chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC----CCCc--
Confidence 567788888888776532 22222211 113455667778778888888888777665442 2111
Q ss_pred HHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchh----------hhHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYY--------GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV----------LDVAVSLAKVADV 267 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~--------~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~----------~~la~~l~~l~~~ 267 (326)
....+.-.++.+... .+++++|+..|++.++.. +.+.... ..++...-++|.+
T Consensus 87 --~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~~~~~~~~~~~~~~~la~~ 157 (261)
T 3qky_A 87 --RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-------PNHELVDDATQKIRELRAKLARKQYEAARL 157 (261)
T ss_dssp --THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-------TTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-------cCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123455677888877 889999999999887642 2211110 0122223677999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHH----------HhHHhcCcccc
Q 020453 268 DRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQ----------KNHLNQLPKFR 324 (326)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 324 (326)
+..+|++++|+..|++++... ..++........+ +..+..+ +++.+++..|+
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l--~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 219 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAY---PDTPWADDALVGA--MRAYIAYAEQSVRARQPERYRRAVELYE 219 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHHH--HHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHC---CCCchHHHHHHHH--HHHHHHhcccchhhcccchHHHHHHHHH
Confidence 999999999999998877543 1122233344444 5555544 55555555544
No 162
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.88 E-value=0.00014 Score=56.69 Aligned_cols=89 Identities=11% Similarity=0.057 Sum_probs=61.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 294 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~ 294 (326)
.||.+....+++++|++.|++++....+ -....-.+|.+|..+|++++|++.|++++++ +
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~--------------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~------~ 61 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQ--------------KSIKGFYFAKLYYEAKEYDLAKKYICTYINV------Q 61 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHH--------------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcc--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------C
Confidence 3566666667777777777776554332 1222345899999999999999999988754 6
Q ss_pred CCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 295 PEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 295 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
|.++....++ +.++..++++.+++..|++
T Consensus 62 p~~~~a~~~l--g~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 62 ERDPKAHRFL--GLLYELEENTDKAVECYRR 90 (150)
T ss_dssp TTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHH--HHHHHHcCchHHHHHHHHH
Confidence 7777777777 8888888888888777765
No 163
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.87 E-value=0.0045 Score=47.73 Aligned_cols=94 Identities=11% Similarity=0.068 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
.....++.+....+++++|+..|.+++++. +. ....+.++|.++..+|++++|+..|++++.+
T Consensus 48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--- 110 (166)
T 1a17_A 48 IYYGNRSLAYLRTECYGYALGDATRAIELD-------KK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV--- 110 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cc-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 334456666666777777777777766541 11 1345677888888888888888887776643
Q ss_pred hhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
.|.+..+...+..+..+...+++.+++..|.
T Consensus 111 ---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 111 ---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp ---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3444443333311333444566666655543
No 164
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.87 E-value=0.013 Score=55.48 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
....++.+....|++++|+..|++++++ .+.+ ...+..++.++...|++++|++.|++++++....
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYAL-------FQYD-------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 3445666777778888888888877654 1221 3457788999999999999999999998887654
Q ss_pred hcCCCc-hhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 292 TLKPEE-AGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 292 ~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
..+|+. +.+...+ +..+...|++.++...|+
T Consensus 509 ~~~p~~~~~~~~~l--~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 509 QSNEKPWAATWANL--GHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp CCCSGGGHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred ccchhhHHHHHHHH--HHHHHHhcCHHHHHHHHH
Confidence 334543 3444555 555555556555555544
No 165
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.86 E-value=0.029 Score=50.89 Aligned_cols=133 Identities=10% Similarity=0.109 Sum_probs=76.7
Q ss_pred HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 020453 170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLS-----VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 244 (326)
Q Consensus 170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~-----~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~ 244 (326)
.++.+....++...++..++.+.. +.+........+. .....++.+....+++++|+..|++++++.
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---- 287 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLK----LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---- 287 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Confidence 334455555666666666655542 2232222221111 112334777788899999999999987642
Q ss_pred hcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 245 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 245 ~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
+.+. ......+..++.++..+|++++|+..+++++.+ .|+++.+...+ +..+...+++.++...|+
T Consensus 288 ---p~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~l--~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 288 ---PSIA---EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM------EPDNVNALKDR--AEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp ---CSSH---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred ---Ccch---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHH--HHHHHHhcCHHHHHHHHH
Confidence 2211 112346677888888888888888888777654 34444444445 555555555555554443
No 166
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.86 E-value=0.024 Score=43.40 Aligned_cols=101 Identities=11% Similarity=-0.035 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 020453 166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 245 (326)
Q Consensus 166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~ 245 (326)
..+..++.+....++...+....+.+... .+.. ......++.+....+++++|+..|++++++
T Consensus 48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 110 (166)
T 1a17_A 48 IYYGNRSLAYLRTECYGYALGDATRAIEL----DKKY-------IKGYYRRAASNMALGKFRAALRDYETVVKV------ 110 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----Cccc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh------
Confidence 33444445555666766666666555443 2211 234567888999999999999999998765
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453 246 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 289 (326)
Q Consensus 246 ~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 289 (326)
.+.+ ..+...-.++..+...|++++|++.+.++..+..
T Consensus 111 -~p~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 111 -KPHD-----KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp -STTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 2221 1122222334556677888888888887776664
No 167
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.86 E-value=0.0009 Score=45.29 Aligned_cols=47 Identities=23% Similarity=0.655 Sum_probs=37.0
Q ss_pred cccCCcccccccccccCCCeecccCCcchHHhHhcCCC------CCCCCcccc
Q 020453 19 FKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD------CPLCGADIE 65 (326)
Q Consensus 19 ~~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~------CP~Cr~~~~ 65 (326)
+....-.|+||..++...-....|+|.|=..||.+|+. ||.|+....
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred ccCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 34456789999999654445558999999999998863 999998765
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.83 E-value=0.00066 Score=50.02 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453 259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF 323 (326)
Q Consensus 259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (326)
..+.++|.++..+|++++|+..|++++.+ +|+++.+..++ +..+..+|++.+++..|
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l--~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPNHQALRVFY--AMVLYNLGRYEQGVELL 84 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCchHHHHHH--HHHHHHcCCHHHHHHHH
Confidence 34445555555555555555555544432 33333444444 44444444444444433
No 169
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.81 E-value=0.0044 Score=57.77 Aligned_cols=154 Identities=18% Similarity=0.089 Sum_probs=97.6
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh---------CCchhHhhHHHHHHHHHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAM---------GDADAAVAYFADSVEFLM 196 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~---------h~~H~~~~~~e~~~~~~~ 196 (326)
..+..|++++|...+..+ +...+ . ...+..++.+.... ++...++..++.+...
T Consensus 146 ~~~~~g~~~~A~~~~~~a-------l~~~p-------~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-- 208 (474)
T 4abn_A 146 VYWKKGDVTSAHTCFSGA-------LTHCK-------N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-- 208 (474)
T ss_dssp HHHHHTCHHHHHHHHHHH-------HTTCC-------C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHcCCHHHHHHHHHHH-------HhhCC-------C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--
Confidence 455677777777666533 22211 1 13344455555444 4444455444444332
Q ss_pred hCCCChhHHHHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHH
Q 020453 197 KLPMDDLEIIHTLSVSLNKIGDLKYYG--------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVD 268 (326)
Q Consensus 197 ~L~~~~~~~~~~i~~~~~~l~~l~~~~--------~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~ 268 (326)
.+... .....++.+.... +++++|+..|++++++... ..+....+.++|.++
T Consensus 209 --~p~~~-------~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----------~~~~~~~~~~lg~~~ 268 (474)
T 4abn_A 209 --DVLDG-------RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-----------ASSNPDLHLNRATLH 268 (474)
T ss_dssp --CTTCH-------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-----------GGGCHHHHHHHHHHH
T ss_pred --CCCCH-------HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-----------cccCHHHHHHHHHHH
Confidence 33332 2455677777777 8899999999999876210 112356788899999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 269 RSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
..+|++++|++.|++++.+ +|++.....++ +.++..+++..+++..+.
T Consensus 269 ~~~g~~~~A~~~~~~al~l------~p~~~~a~~~l--~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 269 KYEESYGEALEGFSQAAAL------DPAWPEPQQRE--QQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHHHHHHHHHHHhc
Confidence 9999999999999988764 56666666666 777777777777665544
No 170
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.80 E-value=0.0023 Score=47.31 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSL 237 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl 237 (326)
..++.+....+++++|+..|++++
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al 43 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAI 43 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344445555555555555555544
No 171
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.79 E-value=0.0043 Score=52.23 Aligned_cols=27 Identities=26% Similarity=0.130 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLN 238 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~ 238 (326)
....++.+....|++++|+..|+++++
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALA 71 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344555555555555555555555544
No 172
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.78 E-value=0.011 Score=46.06 Aligned_cols=125 Identities=17% Similarity=0.161 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453 167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 246 (326)
Q Consensus 167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~ 246 (326)
.+...+.+....++...+..+.+.+... .+.. ......++.+....+++++|+..|+++++..
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------ 106 (186)
T 3as5_A 44 VALHLGIAYVKTGAVDRGTELLERSLAD----APDN-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN------ 106 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------
Confidence 3344445555667777777666655433 2222 1234567777777888888888888876651
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
+.+ ...+..++.++..+|++++|+..+++++.. .|....+...+ +..+...|++.++...|+
T Consensus 107 -~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 107 -PIN-------FNVRFRLGVALDNLGRFDEAIDSFKIALGL------RPNEGKVHRAI--AFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp -TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred -cHh-------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc------CccchHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence 111 344566778888888888888887776543 34444444445 555555555555555443
No 173
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.77 E-value=0.027 Score=43.67 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 239 (326)
Q Consensus 170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~ 239 (326)
..+......++...++..++.+.... +.. .....+++.+....+++++|+..|++++++
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~~----p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSIA----PAN-------PIYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS----TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC----CcC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34444555666666666665554332 111 224456666777777777777777776654
No 174
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.75 E-value=0.0033 Score=45.14 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
..++......+++++|+..|+++++.. +.+ ...+.++|.++..+|++++|+..+++++.
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 66 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-------PHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-------CCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 445555555666666666666655431 111 23344555555566666666655555443
No 175
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.75 E-value=0.0018 Score=55.88 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 292 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~ 292 (326)
...++......|++++|+..|.+++++ .+. ....+.++|.++..+|++++|+..+++++.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~------ 66 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITR-------NPL-------VAVYYTNRALCYLKMQQPEQALADCRRALE------ 66 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------
Confidence 345555666666666666666666553 111 123344555555555555555544443332
Q ss_pred cCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453 293 LKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF 323 (326)
Q Consensus 293 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (326)
.+|++.....++ +..+..+|++.+++..|
T Consensus 67 ~~p~~~~~~~~l--g~~~~~~g~~~~A~~~~ 95 (281)
T 2c2l_A 67 LDGQSVKAHFFL--GQCQLEMESYDEAIANL 95 (281)
T ss_dssp SCTTCHHHHHHH--HHHHHHTTCHHHHHHHH
T ss_pred hCCCCHHHHHHH--HHHHHHcCCHHHHHHHH
Confidence 234444444444 44444444444444433
No 176
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.73 E-value=0.043 Score=42.06 Aligned_cols=62 Identities=11% Similarity=0.172 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
....++.+....|++++|+..|++++++ .+.+ ...+.++|.++..+|++++|+..|++++.+
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL-------DHYD-------SRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-------Cccc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4556788888899999999999988754 2222 345567888999999999999988888765
No 177
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.72 E-value=0.0081 Score=54.45 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHH
Q 020453 162 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGD-LQAARSYYVRSLNV 239 (326)
Q Consensus 162 ~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~-~~~a~~~~~~sl~~ 239 (326)
+.+...+.+++.+....++...++..++.+... .+... .....++.+...+++ +++|+..|++++++
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l----~P~~~-------~a~~~~g~~l~~~g~d~~eAl~~~~~al~l 161 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL----NAANY-------TVWHFRRVLLKSLQKDLHEEMNYITAIIEE 161 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CccCH-------HHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 444555566666666677777777776655532 23222 245567777777775 88888888877664
No 178
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.72 E-value=0.0014 Score=53.31 Aligned_cols=123 Identities=15% Similarity=0.075 Sum_probs=82.0
Q ss_pred HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453 173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 252 (326)
Q Consensus 173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~ 252 (326)
......++...++..++.+ +.. . .....+++.+....|++++|+..|++++++. +.
T Consensus 14 ~~~~~~~~~~~A~~~~~~a------~~~-~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~--- 69 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAV------QDP-H-------SRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KH--- 69 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTS------SSC-C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT---
T ss_pred HHHHHhCCHHHHHHHHHHH------cCC-C-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cc---
Confidence 3444556666666555433 222 1 2366789999999999999999999998762 22
Q ss_pred hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh----------cCCCchhHHhhccchhhhHHHHhHHhcCcc
Q 020453 253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT----------LKPEEAGLEQRCWNSSTTNFQKNHLNQLPK 322 (326)
Q Consensus 253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (326)
....+.++|.++..+|++++|++.|++++.+...-. ..|....+..++ +..+..+|++.++...
T Consensus 70 ----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 70 ----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI--AFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH--HHHHHHTTCHHHHHHH
T ss_pred ----chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH--HHHHHHccCHHHHHHH
Confidence 245678899999999999999999999887542211 122333455555 6666666666666665
Q ss_pred ccc
Q 020453 323 FRS 325 (326)
Q Consensus 323 ~~~ 325 (326)
|++
T Consensus 144 ~~~ 146 (213)
T 1hh8_A 144 LAL 146 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 179
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.71 E-value=0.0089 Score=55.69 Aligned_cols=128 Identities=13% Similarity=0.029 Sum_probs=79.1
Q ss_pred HHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020453 171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 250 (326)
Q Consensus 171 ~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~ 250 (326)
++.+....++...+..+.+.+... .+... .....++.+....|++++|+..|++++++........
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~----~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--- 415 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLK----FPTLP-------EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH--- 415 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CTTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh----CCCCh-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH---
Confidence 344444556666665555544433 12221 2445678888888999999999999888764321111
Q ss_pred CchhhhHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcC
Q 020453 251 PSQVLDVAVSLAKVADVDRSI----------GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQL 320 (326)
Q Consensus 251 ~~~~~~la~~l~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (326)
.. ...+..++.++..+ |++++|+..|++++.+ +|.+..+...+ +.++..+|++.++.
T Consensus 416 ----~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l--~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 416 ----VG-IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL------DPRSEQAKIGL--AQLKLQMEKIDEAI 482 (537)
T ss_dssp ----ST-THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHHH
T ss_pred ----HH-HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHhccHHHHH
Confidence 11 12334556677776 8888888888777654 56666666666 77777777777776
Q ss_pred ccccc
Q 020453 321 PKFRS 325 (326)
Q Consensus 321 ~~~~~ 325 (326)
..|++
T Consensus 483 ~~~~~ 487 (537)
T 3fp2_A 483 ELFED 487 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 180
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.71 E-value=0.012 Score=55.76 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
....++.+....|++++|+..|++++++..+. ...+. ..+..+..++.++...|++++|++.+++++++
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~p~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 545 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKT-QSNEK------PWAATWANLGHAYRKLKMYDAAIDALNQGLLL---- 545 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCSG------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc-ccchh------hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----
Confidence 45678889999999999999999998875431 11111 12567888999999999999999988877654
Q ss_pred hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.|+++.+...+ +.++...|+..++...|++
T Consensus 546 --~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 546 --STNDANVHTAI--ALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp --SSCCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred --CCCChHHHHHH--HHHHHHhCCHHHHHHHHHH
Confidence 46666666666 6666777777776666654
No 181
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.69 E-value=0.0029 Score=53.34 Aligned_cols=124 Identities=13% Similarity=0.091 Sum_probs=76.9
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+... +...+.. ...+..++.+....++...++...+.+.. . . ....+
T Consensus 12 ~~~~~~~~~~A~~~~~~~-------l~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~---~-~~~~~ 72 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKL-------EAKKYNS-------PYIYNRRAVCYYELAKYDLAQKDIETYFS-K---V-NATKA 72 (272)
T ss_dssp HHHTTTCHHHHHHHHHHH-------HHTTCCC-------STTHHHHHHHHHHTTCHHHHHHHHHHHHT-T---S-CTTTC
T ss_pred HHHHhcCHHHHHHHHHHH-------HHhCCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-c---c-CchhH
Confidence 456778888887776543 2222221 22344455666677888888777666554 1 1 11111
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
.......++.+....+++++|+..|++++++. +.. ...+..+|.++..+|++++|+..|++++
T Consensus 73 ---~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 73 ---KSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-------TTR-------LDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTC-------THHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred ---HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------ccc-------HHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 23445678888899999999999999987742 111 2346667777777777777776665543
No 182
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.69 E-value=0.013 Score=47.43 Aligned_cols=127 Identities=10% Similarity=-0.029 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453 167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 246 (326)
Q Consensus 167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~ 246 (326)
.+...+.+....++...+..+.+.+... .+.. ......++.+....+++++|+..|+++++..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------ 72 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKS----DPKN-------ELAWLVRAEIYQYLKVNDKAQESFRQALSIK------ 72 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh----Cccc-------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------
Confidence 3344455666677878887777665543 2222 2345678888899999999999999987652
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 247 HSNVPSQVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 247 ~~~~~~~~~~la~~l~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
+. ....+..++.++... |++++|+..+++++. ....|....+...+ +..+...++..+++..|+
T Consensus 73 -~~-------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~ 137 (225)
T 2vq2_A 73 -PD-------SAEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNK--GICSAKQGQFGLAEAYLK 137 (225)
T ss_dssp -TT-------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred -CC-------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence 22 134567789999999 999999999988876 12234334444444 444444555555544443
No 183
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.0033 Score=47.50 Aligned_cols=94 Identities=19% Similarity=0.155 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
....++......+++++|+..|++++++. +.+ ......+.+++.++..+|++++|+..+++++.+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 94 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLD-------ATP----QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---- 94 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSC-------CCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc-------ccc----hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 34456666666677777777776665421 110 012445566666777777777776666665543
Q ss_pred hcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
.|.+..+..++ +.++..++++.++...|+
T Consensus 95 --~~~~~~~~~~~--a~~~~~~~~~~~A~~~~~ 123 (148)
T 2dba_A 95 --DGGDVKALYRR--SQALEKLGRLDQAVLDLQ 123 (148)
T ss_dssp --TSCCHHHHHHH--HHHHHHHTCHHHHHHHHH
T ss_pred --CccCHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence 34444444444 555555555555544443
No 184
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.67 E-value=0.0039 Score=48.96 Aligned_cols=88 Identities=15% Similarity=0.045 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHh-hcCCCchhHHhhcc
Q 020453 230 RSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE---DVAVDGFQEAIKRLESL-TLKPEEAGLEQRCW 305 (326)
Q Consensus 230 ~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~l-~~~p~~~~~~~~~~ 305 (326)
...|+++++..+...+..+.+. ..+.++|.++..++++ ..|++.+++|+..+++. ..+|..+....++
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~a-------ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~L- 86 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDA-------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI- 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH-
T ss_pred HhHHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHH-
Confidence 3455566666666666677654 4555566666655543 45667788888888887 7789998888888
Q ss_pred chhhhHHHH-----------hHHhcCcccccC
Q 020453 306 NSSTTNFQK-----------NHLNQLPKFRSA 326 (326)
Q Consensus 306 ~~~~~~~~~-----------~~~~~~~~~~~~ 326 (326)
+..+..++ ++.+++.+|++|
T Consensus 87 -G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA 117 (158)
T 1zu2_A 87 -GNAYTSFAFLTPDETEAKHNFDLATQFFQQA 117 (158)
T ss_dssp -HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhcccCcchhhhhccHHHHHHHHHHH
Confidence 88887764 788888888764
No 185
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.67 E-value=0.008 Score=58.78 Aligned_cols=62 Identities=16% Similarity=0.041 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 239 (326)
Q Consensus 167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~ 239 (326)
.+...+.+....++...++..++.+.... +.. ......++.+....+++++|+..|++++++
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 496 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERV----GWR-------WRLVWYRAVAELLTGDYDSATKHFTEVLDT 496 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH----CCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC----cch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444556667788888877776665442 222 235567888899999999999999998875
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.67 E-value=0.012 Score=55.00 Aligned_cols=115 Identities=11% Similarity=0.147 Sum_probs=79.2
Q ss_pred HhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhh
Q 020453 177 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 256 (326)
Q Consensus 177 ~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~ 256 (326)
..++..+++..++.+.+. .+.. .....+++.+...++++++|+..|++++++ .+.
T Consensus 18 ~~g~~~~A~~~~~~Al~~----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-------~p~------- 72 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIEL----NPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL-------DKK------- 72 (477)
T ss_dssp TTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------CTT-------
T ss_pred HhCCHHHHHHHHHHHHHh----CCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCC-------
Confidence 455666777666665544 2222 346678999999999999999999999876 222
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhh--hHHHHhHHhcCcccc
Q 020453 257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSST--TNFQKNHLNQLPKFR 324 (326)
Q Consensus 257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 324 (326)
.+..+.++|.++..+|++++|++.|++++++ +|++......+ +.+ +...+++.+++..|+
T Consensus 73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l--~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 73 YIKGYYRRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKY--QECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCTTHHHHH--HHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHHHHHHHHHHhcccc
Confidence 2457788999999999999999999988765 45555555555 444 555678888877766
No 187
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.66 E-value=0.0077 Score=50.65 Aligned_cols=127 Identities=10% Similarity=0.048 Sum_probs=89.0
Q ss_pred HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453 170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 249 (326)
Q Consensus 170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~ 249 (326)
.++.+....++...++.+++.+... .+.... ....++.+....+++++|+..|+++++.- ....
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~ 71 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAK----KYNSPY-------IYNRRAVCYYELAKYDLAQKDIETYFSKV-----NATK 71 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHT----TCCCST-------THHHHHHHHHHTTCHHHHHHHHHHHHTTS-----CTTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHhcc-----Cchh
Confidence 3445555677777787777665533 332222 34567888889999999999999986521 1111
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 250 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 250 ~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
..+..+..+|.++..+|++++|++.|++++.+ +|..+.+...+ +..+..+|++.+++..|++|
T Consensus 72 ------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 72 ------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDR------DTTRLDMYGQI--GSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp ------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHH--HHHHHHTTCHHHHHHHHGGG
T ss_pred ------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------CcccHHHHHHH--HHHHHHccCHHHHHHHHHHH
Confidence 13556788999999999999999999888763 45566666667 77777788888887777653
No 188
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.64 E-value=0.021 Score=49.11 Aligned_cols=134 Identities=19% Similarity=0.127 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 020453 166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 245 (326)
Q Consensus 166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~ 245 (326)
..+..++.+....++...+..+.+.+... .+.. ......++.+....+++++|+..|++++++.
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----- 236 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVEL----RPDD-------AQLWNKLGATLANGNRPQEALDAYNRALDIN----- 236 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Confidence 34445556666778888887777665543 2222 2345678889999999999999999987652
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC-----chhHHhhccchhhhHHHHhHHhc
Q 020453 246 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE-----EAGLEQRCWNSSTTNFQKNHLNQ 319 (326)
Q Consensus 246 ~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~ 319 (326)
+. ....+..++.++..+|++++|+..+++++.+.... ...+. ...+...+ +..+..+|+..++
T Consensus 237 --~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A 305 (327)
T 3cv0_A 237 --PG-------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFF--RMLLNVMNRPDLV 305 (327)
T ss_dssp --TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHH--HHHHHHTTCHHHH
T ss_pred --CC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHH--HHHHHhcCCHHHH
Confidence 22 13456788999999999999999999998775432 10110 33444555 6666666777766
Q ss_pred CcccccC
Q 020453 320 LPKFRSA 326 (326)
Q Consensus 320 ~~~~~~~ 326 (326)
...|++|
T Consensus 306 ~~~~~~~ 312 (327)
T 3cv0_A 306 ELTYAQN 312 (327)
T ss_dssp HHHTTCC
T ss_pred HHHHHHH
Confidence 6666543
No 189
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.63 E-value=0.045 Score=46.91 Aligned_cols=88 Identities=10% Similarity=-0.012 Sum_probs=51.7
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+...- ... +.....+...+.+....++...+....+.+... .+..
T Consensus 30 ~~~~~~~~~~A~~~~~~~~-------~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~--- 88 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVC-------QAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKD--- 88 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHH-------HHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC---
T ss_pred HHHHhccHHHHHHHHHHHH-------HhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CcCC---
Confidence 4567788888877665331 111 222333444555666677777777666655543 2222
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 238 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~ 238 (326)
......++.+....+++++|+..|+++++
T Consensus 89 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 117 (327)
T 3cv0_A 89 ----IAVHAALAVSHTNEHNANAALASLRAWLL 117 (327)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12345567777777788888777777665
No 190
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.63 E-value=0.12 Score=38.87 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
..-.++......|++++|+..|+++++. .+.+ ...+..+|.++..+|++++|+..|++++.+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML-------DHYD-------ARYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh-------CCcc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4456788888999999999999998754 2332 345667899999999999999999988765
No 191
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.60 E-value=0.026 Score=51.18 Aligned_cols=100 Identities=21% Similarity=0.094 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChh---HHHHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 169 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL---EIIHTLSV-----SLNKIGDLKYYGGDLQAARSYYVRSLNVR 240 (326)
Q Consensus 169 ~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~---~~~~~i~~-----~~~~l~~l~~~~~~~~~a~~~~~~sl~~~ 240 (326)
..++.+....++...+..+++.+. ++.+... .....+.. ....++.+....+++++|+..|++++++.
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVL----KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH----hcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 334455555666666665554433 2333333 22222211 23344666777889999999888887631
Q ss_pred HHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 241 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 241 ~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
+. ....+..++.++...|++++|+..|++++.
T Consensus 174 -------~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 205 (450)
T 2y4t_A 174 -------VW-------DAELRELRAECFIKEGEPRKAISDLKAASK 205 (450)
T ss_dssp -------TT-------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred -------CC-------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 123344555555566666666555555543
No 192
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.58 E-value=0.011 Score=49.05 Aligned_cols=60 Identities=5% Similarity=0.080 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
....+..++.++..+|++++|+..+++++.. .|.+..+...+ +.++...++..++...|+
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRL------NRNQPSVALEM--ADLLYKEREYVPARQYYD 199 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CcccHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence 3455566677777777777777666655432 34444455555 555556666666655554
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.57 E-value=0.031 Score=39.60 Aligned_cols=65 Identities=8% Similarity=0.138 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
....++.+....|++++|+..|++++++ .+.. ...+.++|.++..+|++++|++.|++++.+...
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVET-------DPDY-------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4567889999999999999999999775 2332 235778899999999999999999999988754
No 194
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.56 E-value=0.0097 Score=48.57 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=60.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhh-----cCCCCCchhhhHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453 216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVK-----RHSNVPSQVLDVAV-SLAKVADVDRSIGNEDVAVDGFQEAIKRLE 289 (326)
Q Consensus 216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~-----~~~~~~~~~~~la~-~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 289 (326)
.+......|++++|+..|++++++.-.... ...... .+.. ...++|.++..+|++++|+..|++++++
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNS----EISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTS----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchh----hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 445556789999999999999886432111 011111 1111 2234888888899988888888877654
Q ss_pred HhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 290 SLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 290 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+|.++....++ +.++..+|++.+++..|++
T Consensus 84 ----~p~~~~~~~~l--g~~~~~~g~~~~A~~~~~~ 113 (208)
T 3urz_A 84 ----APNNVDCLEAC--AEMQVCRGQEKDALRMYEK 113 (208)
T ss_dssp ----CTTCHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred ----CCCCHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 45555555555 5556666666665555543
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.54 E-value=0.027 Score=38.39 Aligned_cols=74 Identities=24% Similarity=0.391 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
.....++.+....+++++|+..|++++++. +.+ ...+.++|.++..+|++++|+..+++++.+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--- 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--- 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCC-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 455678888899999999999999998652 221 345678899999999999999999888764
Q ss_pred hhcCCCchhHHhhc
Q 020453 291 LTLKPEEAGLEQRC 304 (326)
Q Consensus 291 l~~~p~~~~~~~~~ 304 (326)
+|.+.....++
T Consensus 73 ---~p~~~~~~~~l 83 (91)
T 1na3_A 73 ---DPNNAEAKQNL 83 (91)
T ss_dssp ---CTTCHHHHHHH
T ss_pred ---CCCCHHHHHHH
Confidence 45555444444
No 196
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.50 E-value=0.011 Score=42.78 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLN 238 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~ 238 (326)
.++.+....+++++|+..|+++++
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~ 37 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALE 37 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444455555555555555443
No 197
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.49 E-value=0.19 Score=40.65 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
.+++.+....|++++|+..|++++++ .+.+ ...+.++|.++..+|++++|+..|++++.+
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK-------APNN-------VDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45899999999999999999998775 2332 456788999999999999999999988764
No 198
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.46 E-value=0.11 Score=37.59 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=71.0
Q ss_pred HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453 170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 249 (326)
Q Consensus 170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~ 249 (326)
..+......++...++.+++.+... .+.. ......++.+....+++++|+..|++++++..... .
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~ 73 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKEL----DPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR----E 73 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST----T
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc----CCcc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc----h
Confidence 3445555677777777777665543 2222 23456788888999999999999999988754311 1
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 250 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 250 ~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
........+.++|.++..+|++++|++.|++++.+
T Consensus 74 ---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 74 ---DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11233567788999999999999999999988764
No 199
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.42 E-value=0.15 Score=36.66 Aligned_cols=64 Identities=22% Similarity=0.260 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
......++.+....+++++|+..|+++++. .+.+ ...+..+|.++...|++++|+..+++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL-------NPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc-------CCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence 345566777888888999999999888764 1211 345667788888889999998888887764
No 200
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.41 E-value=0.00098 Score=62.39 Aligned_cols=92 Identities=11% Similarity=0.076 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 292 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~ 292 (326)
...++......+++++|+..|++++++ .+. .+..+.++|.++..+|++++|++.|++++++
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 69 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIEL-------NPS-------NAIYYGNRSLAYLRTECYGYALGDATRAIEL----- 69 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 345566667789999999999999876 222 2567889999999999999999999888754
Q ss_pred cCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 293 LKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 293 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
+|.++....++ +..+..++++.+|+..|++|
T Consensus 70 -~p~~~~~~~~l--g~~~~~~g~~~eA~~~~~~a 100 (477)
T 1wao_1 70 -DKKYIKGYYRR--AASNMALGKFRAALRDYETV 100 (477)
T ss_dssp -CTTCHHHHHHH--HHHHHHHTCHHHHHHHHHHH
T ss_pred -CCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHH
Confidence 67777777778 88888888888888777653
No 201
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.41 E-value=0.006 Score=54.20 Aligned_cols=110 Identities=12% Similarity=0.013 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCC-CCC-chhhh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 209 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS-NVP-SQVLD-VAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 209 i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~-~~~-~~~~~-la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
.......++......+++++|+..|++++++......... ... ..... ....+.++|.++..+|++++|+..+++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455677888888999999999999999886433221000 000 00000 11367789999999999999999998887
Q ss_pred HHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 286 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 286 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
.+ +|.++....++ +..+..++++.++...|++|
T Consensus 258 ~~------~p~~~~a~~~l--g~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 258 TE------EEKNPKALFRR--GKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HH------CTTCHHHHHHH--HHHHHTTTCHHHHHHHHHHT
T ss_pred Hh------CCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHH
Confidence 54 46666666666 77777777777777666543
No 202
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.39 E-value=0.048 Score=39.83 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 020453 165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 244 (326)
Q Consensus 165 ~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~ 244 (326)
...+...+......++...++..++.+... .+.. ......++.+....+++++|+..|++++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---- 80 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQLE---- 80 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT----CTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----
Confidence 344445556666778888888777665432 2222 2345678888889999999999999988752
Q ss_pred hcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 245 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 245 ~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
+. ....+.++|.++..+|++++|+..+++++.+
T Consensus 81 ---~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 81 ---PT-------FIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp ---TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---CC-------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 22 1346778899999999999999999887754
No 203
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.39 E-value=0.0024 Score=45.48 Aligned_cols=88 Identities=9% Similarity=0.091 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 293 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~ 293 (326)
..++.+....+++++|+..|++++++. +.+ ...+.++|.++..+|++++|+..+++++.+
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 69 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-------PEE-------SKYWLMKGKALYNLERYEEAVDCYNYVINV------ 69 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-------CCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------
Confidence 467788888999999999999987652 221 345678899999999999999988877653
Q ss_pred CCC--chhHHhhccchhhhHHH-HhHHhcCccc
Q 020453 294 KPE--EAGLEQRCWNSSTTNFQ-KNHLNQLPKF 323 (326)
Q Consensus 294 ~p~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 323 (326)
.|. ...+..++ +..+..+ +++.+++.+|
T Consensus 70 ~~~~~~~~~~~~l--~~~~~~~~~~~~~A~~~~ 100 (112)
T 2kck_A 70 IEDEYNKDVWAAK--ADALRYIEGKEVEAEIAE 100 (112)
T ss_dssp SCCTTCHHHHHHH--HHHHTTCSSCSHHHHHHH
T ss_pred CcccchHHHHHHH--HHHHHHHhCCHHHHHHHH
Confidence 444 44444444 4444445 5444444443
No 204
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.31 E-value=0.024 Score=40.75 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 294 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~ 294 (326)
.||......++|..|+..|+++++...... . .-......+..+|.++..+|+++.|+.++++++. ..
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~--~-----~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~------l~ 76 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGE--I-----STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE------LD 76 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--C-----CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HC
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccC--C-----CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh------cC
Confidence 689999999999999999999987653211 0 1123566788999999999999999999888765 36
Q ss_pred CCchhHHhhc
Q 020453 295 PEEAGLEQRC 304 (326)
Q Consensus 295 p~~~~~~~~~ 304 (326)
|.+..++.++
T Consensus 77 P~~~~~~~n~ 86 (104)
T 2v5f_A 77 PEHQRANGNL 86 (104)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHhhH
Confidence 7776666655
No 205
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.27 E-value=0.046 Score=39.68 Aligned_cols=118 Identities=19% Similarity=0.313 Sum_probs=67.4
Q ss_pred HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453 173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 252 (326)
Q Consensus 173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~ 252 (326)
.+....++...+..+.+.+... .+.. ......++.+....+++++|+..|+++++.. +..
T Consensus 9 ~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~-- 68 (136)
T 2fo7_A 9 NAYYKQGDYDEAIEYYQKALEL----DPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRS-- 68 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTC--
T ss_pred HHHHHcCcHHHHHHHHHHHHHc----CCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-------CCc--
Confidence 3344556666666665554332 1211 1234556777777888888888888876541 111
Q ss_pred hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453 253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF 323 (326)
Q Consensus 253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (326)
...+..++.++...|++++|+..+++++.+ .|....+...+ +..+...++..++...|
T Consensus 69 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l--a~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 69 -----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNL--GNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp -----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHTTTCHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCChHHHHHH--HHHHHHHccHHHHHHHH
Confidence 234566788888888888888887776653 33333333334 44444444554444443
No 206
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.26 E-value=0.03 Score=52.05 Aligned_cols=92 Identities=9% Similarity=0.085 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
....++.+....+++++|+..|++++++ .+.+ ...+..+|.++...|++++|+..+++++.+
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---- 373 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSL-------NPEN-------VYPYIQLACLLYKQGKFTESEAFFNETKLK---- 373 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 3445666666667777777766666553 1111 234566788888888888888777766543
Q ss_pred hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.|.+..+...+ +..+...|++.++...|++
T Consensus 374 --~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 374 --FPTLPEVPTFF--AEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp --CTTCTHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred --CCCChHHHHHH--HHHHHHhCCHHHHHHHHHH
Confidence 45666666666 7777777777777766654
No 207
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.22 E-value=0.019 Score=47.05 Aligned_cols=125 Identities=10% Similarity=0.124 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 020453 166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 245 (326)
Q Consensus 166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~ 245 (326)
..+..++.+....++...+....+.+... .+.. ......++.+....+++++|+..|++++++.
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----- 121 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALEL----DSSA-------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG----- 121 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCcc-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----
Confidence 34445556666778888887777665543 2222 2345678888889999999999999987652
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453 246 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF 323 (326)
Q Consensus 246 ~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (326)
+.+ ...+..++.++..+|++++|+..+++++.+ .|.+..+...+ +..+...+++.++...|
T Consensus 122 --~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l--~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 122 --MEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL------NENDTEARFQF--GMCLANEGMLDEALSQF 182 (243)
T ss_dssp --CCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHHTCCHHHHHHH
T ss_pred --CCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCccHHHHHHH--HHHHHHcCCHHHHHHHH
Confidence 221 335677899999999999999999888754 33333334334 44444444444444333
No 208
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.017 Score=53.28 Aligned_cols=97 Identities=13% Similarity=0.031 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS---IGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~---~~~~~~a~~~~~~~~~~~ 288 (326)
....++.+....|++++|+..|++++++........ ..+..+..+|.++.. .|++++|+..+++++.+
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~- 444 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--------VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL- 444 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--------SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--------HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-
Confidence 445678888889999999999999877643211100 112356677888888 88888888888777653
Q ss_pred HHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 289 ESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 289 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
.|........+ +.++...|+..++...|+
T Consensus 445 -----~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 445 -----DPRSEQAKIGL--AQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp -----CTTCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred -----CcccHHHHHHH--HHHHHHhcCHHHHHHHHH
Confidence 34444444444 555555555555555544
No 209
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.13 E-value=0.039 Score=46.59 Aligned_cols=88 Identities=17% Similarity=0.212 Sum_probs=50.0
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 020453 212 SLNKIGDLKYY----GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQE 283 (326)
Q Consensus 212 ~~~~l~~l~~~----~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~----~~~~~~a~~~~~~ 283 (326)
....++.+... .+++++|+..|+++++. .....+.++|.++.. .+++++|+.+|++
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 139 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK 139 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 44556666666 66666666666665432 013456677777777 7777777777776
Q ss_pred HHHHHHHhhcCCCchhHHhhccchhhhHH----HHhHHhcCccccc
Q 020453 284 AIKRLESLTLKPEEAGLEQRCWNSSTTNF----QKNHLNQLPKFRS 325 (326)
Q Consensus 284 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 325 (326)
+++. . ......++ +.++.. .++..+++..|++
T Consensus 140 a~~~------~--~~~a~~~l--g~~~~~~~~~~~~~~~A~~~~~~ 175 (273)
T 1ouv_A 140 ACDL------N--DGDGCTIL--GSLYDAGRGTPKDLKKALASYDK 175 (273)
T ss_dssp HHHT------T--CHHHHHHH--HHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHhc------C--cHHHHHHH--HHHHHcCCCCCCCHHHHHHHHHH
Confidence 6542 1 22333334 444444 4555555555543
No 210
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.05 E-value=0.099 Score=45.25 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=77.1
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453 126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 205 (326)
Q Consensus 126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~ 205 (326)
..+..|++++|...+...- .. .|.....+...+.+....++...+....+.+... .+...
T Consensus 12 ~~~~~g~~~~A~~~~~~~l-------~~-------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~-- 71 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAV-------DG-------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----KMDFT-- 71 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHH-------HH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCH--
T ss_pred HHHHcCCHHHHHHHHHHHH-------hh-------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcc--
Confidence 4567888888887775432 11 2222344555667777788888888777766544 22222
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhH-----HHHHHHHHHHHHhcCCHHHHHHH
Q 020453 206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV-----AVSLAKVADVDRSIGNEDVAVDG 280 (326)
Q Consensus 206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~l-----a~~l~~l~~~~~~~~~~~~a~~~ 280 (326)
.....++.+....+++++|+..|++++++..... .+......+ ......++.++...|++++|++.
T Consensus 72 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 142 (359)
T 3ieg_A 72 -----AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ----EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITF 142 (359)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCccc----ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3456788888899999999999998876422000 111111111 11222335666666776666666
Q ss_pred HHHHHH
Q 020453 281 FQEAIK 286 (326)
Q Consensus 281 ~~~~~~ 286 (326)
+++++.
T Consensus 143 ~~~~~~ 148 (359)
T 3ieg_A 143 LDKILE 148 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 211
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.04 E-value=0.078 Score=44.66 Aligned_cols=90 Identities=10% Similarity=0.156 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHh----cCCHHHHHHHH
Q 020453 210 SVSLNKIGDLKYY----GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGF 281 (326)
Q Consensus 210 ~~~~~~l~~l~~~----~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~----~~~~~~a~~~~ 281 (326)
......++.+... .+++++|+..|+++++. . ......+++.++.. .+++++|+.+|
T Consensus 110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~---------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~ 173 (273)
T 1ouv_A 110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------N---------DGDGCTILGSLYDAGRGTPKDLKKALASY 173 (273)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------T---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------C---------cHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 3466788999988 99999999999998763 1 14678899999998 99999999999
Q ss_pred HHHHHHHHHhhcCCCchhHHhhccchhhhHH----HHhHHhcCccccc
Q 020453 282 QEAIKRLESLTLKPEEAGLEQRCWNSSTTNF----QKNHLNQLPKFRS 325 (326)
Q Consensus 282 ~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 325 (326)
+++++. .......++ +.++.. .+++.+++..|++
T Consensus 174 ~~a~~~--------~~~~a~~~l--g~~~~~g~~~~~~~~~A~~~~~~ 211 (273)
T 1ouv_A 174 DKACDL--------KDSPGCFNA--GNMYHHGEGATKNFKEALARYSK 211 (273)
T ss_dssp HHHHHT--------TCHHHHHHH--HHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHHHC--------CCHHHHHHH--HHHHHcCCCCCccHHHHHHHHHH
Confidence 988753 123444455 566666 6677777766654
No 212
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.04 E-value=0.047 Score=39.69 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
......++.+....+++++|+..|++++++ .+.+ ...+.++|.++..+|++++|+..+++++.+.
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQ-------FPNH-------QALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 456778999999999999999999998766 2332 4567789999999999999999999887653
No 213
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.03 E-value=0.014 Score=47.25 Aligned_cols=88 Identities=13% Similarity=-0.009 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 292 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~ 292 (326)
.-.++......+++++|+..|++++ .. ....+.++|.++..+|++++|++.|++++.+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~---------~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----- 66 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ---------DP--------HSRICFNIGCMYTILKNMTEAEKAFTRSINR----- 66 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS---------SC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc---------CC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 3567888888999999999998873 11 1356788999999999999999999988765
Q ss_pred cCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 293 LKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 293 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+|..+....++ +.++..++++.+++..|++
T Consensus 67 -~~~~~~~~~~l--g~~~~~~~~~~~A~~~~~~ 96 (213)
T 1hh8_A 67 -DKHLAVAYFQR--GMLYYQTEKYDLAIKDLKE 96 (213)
T ss_dssp -CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred -CccchHHHHHH--HHHHHHcccHHHHHHHHHH
Confidence 46666666667 7777777777777766654
No 214
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.02 E-value=0.016 Score=42.54 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
.++.+....|++++|+..|+++++. .+.+. .....+.++|.++..+|++++|+..|++++
T Consensus 44 ~lg~~~~~~~~~~~A~~~~~~~~~~-------~p~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 44 WLGESYYATRNFQLAEAQFRDLVSR-------YPTHD----KAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-------CTTST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH-------CCCCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555432 11111 123445555666666666555555555444
No 215
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.97 E-value=0.15 Score=37.59 Aligned_cols=98 Identities=12% Similarity=-0.010 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 020453 168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 247 (326)
Q Consensus 168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~ 247 (326)
+...+......++...++..+..+.... +.. ......++.+....+++++|+..|++++++.
T Consensus 12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------- 73 (137)
T 3q49_B 12 LKEQGNRLFVGRKYPEAAACYGRAITRN----PLV-------AVYYTNRALCYLKMQQPEQALADCRRALELD------- 73 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhC----cCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------
Confidence 3344555667788888877776655442 222 2356788999999999999999999988752
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 248 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 248 ~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
+. ....+.++|.++..+|++++|+..|++++.+-..
T Consensus 74 p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 74 GQ-------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ch-------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 22 2456778999999999999999999999988755
No 216
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.88 E-value=0.025 Score=43.87 Aligned_cols=92 Identities=12% Similarity=0.052 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
.....++.+....+++++|+..|++++++ .+. ....+..++.++...|++++|++.+++++.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 105 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLAD-------APD-------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--- 105 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCC-------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Confidence 34567888888999999999999998765 122 1345677899999999999999998887754
Q ss_pred hhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
.|.+..+...+ +..+...++..++...|+
T Consensus 106 ---~~~~~~~~~~~--a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 106 ---NPINFNVRFRL--GVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp ---CTTCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred ---CcHhHHHHHHH--HHHHHHcCcHHHHHHHHH
Confidence 34444444444 455555555555555443
No 217
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.79 E-value=0.023 Score=44.55 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNV 239 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~ 239 (326)
...++.+....+++++|+..|++++++
T Consensus 47 ~~~lg~~~~~~~~~~~A~~~~~~al~~ 73 (177)
T 2e2e_A 47 WALLGEYYLWQNDYSNSLLAYRQALQL 73 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 345566666666666666666666553
No 218
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.79 E-value=0.013 Score=55.61 Aligned_cols=93 Identities=17% Similarity=0.154 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
.....++.+....+++++|+..|++++++ .+. ....+.++|.++..+|++++|++.|++++++
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 86 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLAL-------HPG-------HPEAVARLGRVRWTQQRHAEAAVLLQQASDA--- 86 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTT-------STT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 35667888888999999999999998764 222 2456788999999999999999999988764
Q ss_pred hhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+|++.....++ +..+..++++.++...|++
T Consensus 87 ---~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~ 116 (568)
T 2vsy_A 87 ---APEHPGIALWL--GHALEDAGQAEAAAAAYTR 116 (568)
T ss_dssp ---CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred ---CCCCHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 56666666667 7777777777777766654
No 219
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.78 E-value=0.067 Score=38.53 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (326)
....++.+....+++++|+..|++++++ .+. ....+.++|.++..+|++++|+..|++++.+...
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDF-------DPT-------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH-------CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4568899999999999999999999865 222 1346678899999999999999999999887654
No 220
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.62 E-value=0.14 Score=38.05 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=68.8
Q ss_pred HHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCC
Q 020453 169 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 248 (326)
Q Consensus 169 ~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~ 248 (326)
...+......++...++..++.+.. +.+.. .........++.+....+++++|+..|++++++ .+
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~ 96 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALG----LDATP----QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-------DG 96 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHT----SCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------TS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH----Hcccc----hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-------Cc
Confidence 3344555567777777776665542 23322 123456678899999999999999999998765 22
Q ss_pred CCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 249 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 249 ~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
.+ ...+.++|.++..+|++++|+..|++++.+
T Consensus 97 ~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 97 GD-------VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 21 345678899999999999999998887754
No 221
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=95.61 E-value=0.069 Score=45.87 Aligned_cols=129 Identities=7% Similarity=-0.047 Sum_probs=81.1
Q ss_pred HHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------
Q 020453 171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN------------ 238 (326)
Q Consensus 171 ~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~------------ 238 (326)
........++...+...++.+... .+... .....++.+....|++++|+..|+++++
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~----~P~~~-------~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQL----SNQNG-------EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----TTSCH-------HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh----CCcch-------hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 344445667777777666655433 23232 2455778888888999999888887533
Q ss_pred ---------------HHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCc--hhHH
Q 020453 239 ---------------VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE--AGLE 301 (326)
Q Consensus 239 ---------------~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~--~~~~ 301 (326)
..++.....+.+ .....++|.++...|++++|++.|.+++.+ +|+. ....
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~-------~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------~p~~~~~~a~ 258 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPED-------AALATQLALQLHQVGRNEEALELLFGHLRX------DLTAADGQTR 258 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTGGGGHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCcc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhc------ccccccchHH
Confidence 112222223332 345667899999999999999888776653 4444 4566
Q ss_pred hhccchhhhHHHHhHHhcCccccc
Q 020453 302 QRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.++ +.++..+|+...+...|++
T Consensus 259 ~~l--~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 259 XTF--QEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHH--HHHHHHHCTTCHHHHHHHH
T ss_pred HHH--HHHHHHcCCCCcHHHHHHH
Confidence 666 6677777666666555543
No 222
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.041 Score=50.65 Aligned_cols=92 Identities=16% Similarity=0.243 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 289 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 289 (326)
......++......|++++|+..|+++++.. +. ...+.++|.++..+|++++|+..+++++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 68 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-------ED--------PVFYSNLSACYVSVGDLKKVVEMSTKALEL-- 68 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------CC--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------cc--------HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--
Confidence 3455567777777788888888888776652 11 345666777777777777777777666542
Q ss_pred HhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 290 SLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 290 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
+|.+......+ +.++..+|++.++...|+
T Consensus 69 ----~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 69 ----KPDYSKVLLRR--ASANEGLGKFADAMFDLS 97 (514)
T ss_dssp ----CSCCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred ----ChHHHHHHHHH--HHHHHHHhhHHHHHHHHH
Confidence 45554444444 555555555555554443
No 223
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.53 E-value=0.065 Score=47.36 Aligned_cols=107 Identities=13% Similarity=0.044 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhCCchhHhhHHHHHHHHHHh------CCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMK------LPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 240 (326)
Q Consensus 167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~------L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~ 240 (326)
.+...+......++...++..++.+...... ++...............+++.+...++++++|+..|.+++++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3444555555667788888777766643211 0000011112222467789999999999999999999998752
Q ss_pred HHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 241 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 241 ~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
+. ....+.++|.++..+|++++|+..|++++.+
T Consensus 261 -------p~-------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 261 -------EK-------NPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp -------TT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred -------CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 2456788999999999999999988877654
No 224
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.53 E-value=0.35 Score=35.01 Aligned_cols=63 Identities=14% Similarity=0.128 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
-.++......+++++|+..|++.++.. +.+. .....+-++|.++..+|++++|+..|++++..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-------PNGV----YTPNALYWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-------CCCc----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356777788899999999999987642 2211 12345667888888899999999888877653
No 225
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.46 E-value=0.036 Score=40.28 Aligned_cols=61 Identities=23% Similarity=0.399 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
...++.+....+++++|+..|+++++. .+.. ...+..++.++...|++++|+..+++++..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 64 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL-------DPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc-------CCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 456777888889999999999998754 1221 345667888899999999999998887654
No 226
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.44 E-value=0.19 Score=43.27 Aligned_cols=63 Identities=19% Similarity=0.110 Sum_probs=39.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHH
Q 020453 222 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE 301 (326)
Q Consensus 222 ~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~ 301 (326)
..+++++|+..|+++++. .+.+ ...+.++|.++..+|++++|.+.|++++.+ +|+++.++
T Consensus 178 ~~~~~~eA~~~~~~~l~~-------~p~~-------~~~~~~la~~~~~~g~~~eA~~~l~~al~~------~p~~~~~l 237 (291)
T 3mkr_A 178 GGEKLQDAYYIFQEMADK-------CSPT-------LLLLNGQAACHMAQGRWEAAEGVLQEALDK------DSGHPETL 237 (291)
T ss_dssp CTTHHHHHHHHHHHHHHH-------SCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred CchHHHHHHHHHHHHHHh-------CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHH
Confidence 345666666666666543 2221 345677788888888888888777766643 45555555
Q ss_pred hhc
Q 020453 302 QRC 304 (326)
Q Consensus 302 ~~~ 304 (326)
.++
T Consensus 238 ~~l 240 (291)
T 3mkr_A 238 INL 240 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 227
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.43 E-value=0.23 Score=34.92 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=64.6
Q ss_pred HHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020453 171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 250 (326)
Q Consensus 171 ~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~ 250 (326)
.+......++...++...+.+... .+.. ......++.+....+++++|+..|++++++. +.
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~- 70 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKL----DPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------PD- 70 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TT-
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH----CCCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------cc-
Confidence 344555677778887777665543 2222 2345678888888999999999999987652 22
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 251 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 251 ~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
....+.++|.++..+|++++|+..+++++.
T Consensus 71 ------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 71 ------WGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 134567889999999999999988876653
No 228
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.35 E-value=0.47 Score=33.56 Aligned_cols=104 Identities=25% Similarity=0.444 Sum_probs=70.2
Q ss_pred HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453 170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 249 (326)
Q Consensus 170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~ 249 (326)
.++.+....++...+..+.+.+... .+.. ......++.+....+++++|+..|+++++. .+.
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~ 75 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALEL----DPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPN 75 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH----CcCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCc
Confidence 3445555667777777776665543 2211 224567888888999999999999998764 122
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhc
Q 020453 250 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRC 304 (326)
Q Consensus 250 ~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~ 304 (326)
+ ...+..++.++...|++++|+..+++++.+ .|.+..+...+
T Consensus 76 ~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l 117 (125)
T 1na0_A 76 N-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAKQNL 117 (125)
T ss_dssp C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH
T ss_pred c-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHH
Confidence 1 345678899999999999999988877653 45554444433
No 229
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.33 E-value=0.042 Score=49.69 Aligned_cols=66 Identities=5% Similarity=-0.069 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 020453 207 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN-EDVAVDGFQEAI 285 (326)
Q Consensus 207 ~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~-~~~a~~~~~~~~ 285 (326)
..-......++.+....+++++|+..|++++++. +.+ ...+.++|.++..+|+ +++|+..|++++
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~-------~~a~~~~g~~l~~~g~d~~eAl~~~~~al 159 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AAN-------YTVWHFRRVLLKSLQKDLHEEMNYITAII 159 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccC-------HHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 3345567778888888999999999999887642 221 2344455555555554 555555555554
Q ss_pred H
Q 020453 286 K 286 (326)
Q Consensus 286 ~ 286 (326)
.
T Consensus 160 ~ 160 (382)
T 2h6f_A 160 E 160 (382)
T ss_dssp H
T ss_pred H
Confidence 4
No 230
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.30 E-value=0.3 Score=40.56 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 020453 165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 244 (326)
Q Consensus 165 ~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~ 244 (326)
...+...+.+....++...+...++.+... .+.. ......++.+....+++++|+..|++++++.
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---- 107 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAI----RPDM-------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---- 107 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCc-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----
Confidence 345555667777778888888777766553 2222 2245678888899999999999999988752
Q ss_pred hcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 245 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 245 ~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
+.+ ...+..+|.++..+|++++|+..+++++.+
T Consensus 108 ---~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 108 ---PTY-------NYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp ---TTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---ccc-------cHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 221 245677888889999999999888887653
No 231
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.21 E-value=0.0041 Score=54.50 Aligned_cols=43 Identities=26% Similarity=0.572 Sum_probs=33.6
Q ss_pred CCcccccccccccCC----Ce----ecccCCcchHHhHhcCC---------------CCCCCCcccc
Q 020453 22 GPLSCMICQALLFEC----SK----CTPCSHVYCKACISRFK---------------DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~----p~----~l~C~h~fC~~Cl~~~~---------------~CP~Cr~~~~ 65 (326)
+...|+||...+ .+ |. ...|+|.|=..||.+|+ .||.||..+.
T Consensus 307 ~~~ECaICys~~-l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYR-LDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSS-CTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceee-cCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 556899999984 43 21 24799999999999985 2999998766
No 232
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=95.19 E-value=0.035 Score=47.77 Aligned_cols=97 Identities=10% Similarity=0.042 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH--------
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA-------- 284 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~-------- 284 (326)
.-.++......|++++|+..|+++++. .+.+ ...+..+|.++..+|++++|+..++++
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~-------~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQL-------SNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------TTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence 346777778889999999999998664 3332 345677888888899999998887764
Q ss_pred -------------------HHHHHHh-hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 285 -------------------IKRLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 285 -------------------~~~~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+..+++. ..+|+++.+..++ +..+...|++.+++..|++
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~l--a~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQL--ALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHH--HHHHHHcccHHHHHHHHHH
Confidence 2334443 5578887777777 7777777777777665543
No 233
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=94.92 E-value=0.0011 Score=44.84 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHH---------HHHHHhCCchhHhhHHHHHHHHHHhCCC
Q 020453 159 ELCSQLGAVLGMLG---------DCCRAMGDADAAVAYFADSVEFLMKLPM 200 (326)
Q Consensus 159 ~~C~~H~~~l~~~C---------~~~~~~h~~H~~~~~~e~~~~~~~~L~~ 200 (326)
..|+.|++.+++|| .|....|++|.++++.+++...+.+|..
T Consensus 19 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~H~~H~~~~l~ea~~~~k~~L~~ 69 (72)
T 2csv_A 19 RKCPVHGKTMELFCQTDQTCICYLCMFQEHKNHSTVTVEEAKAEKETESGP 69 (72)
T ss_dssp CBCTTTCCBCCEEESSSCCEECHHHHHTTTSSSCEEEHHHHHHHHSSCCCC
T ss_pred CcCcccCCceEEEeCCCCeEEccccCCCCCCCCCEecHHHHHHHHHHHHHH
Confidence 57999999999999 4444568889999999999998887765
No 234
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.91 E-value=0.11 Score=36.15 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAV-SLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~-~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
.+......+++++|+..|++++++ .+.+ .. .+.++|.++..+|++++|++.|++++.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~-------~p~~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT-------EPVG-------KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-------CSST-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-------CCCc-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 455667788999999999988764 2322 34 6778899999999999999999888754
No 235
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.82 E-value=0.13 Score=43.08 Aligned_cols=98 Identities=12% Similarity=0.035 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
..-.++......|++++|+..|++.++. .+.+. .....+-++|.++..+|++++|+..|++++.+.
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--- 82 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTY-------GRTHE----WAADAQFYLARAYYQNKEYLLAASEYERFIQIY--- 82 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGG-------CSCST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCCCc----chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC---
Confidence 3446777788899999999999887543 23321 234567789999999999999999998877653
Q ss_pred hcCCCchhHHhhccchhhhHH--------HHhHHhcCccccc
Q 020453 292 TLKPEEAGLEQRCWNSSTTNF--------QKNHLNQLPKFRS 325 (326)
Q Consensus 292 ~~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 325 (326)
..+|........+ +..+.. +++..+++..|++
T Consensus 83 p~~~~~~~a~~~l--g~~~~~~~~~~~~~~~~~~~A~~~~~~ 122 (261)
T 3qky_A 83 QIDPRVPQAEYER--AMCYYKLSPPYELDQTDTRKAIEAFQL 122 (261)
T ss_dssp TTCTTHHHHHHHH--HHHHHHHCCCTTSCCHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHH--HHHHHHhcccccccchhHHHHHHHHHH
Confidence 1233333344444 555544 6666666665543
No 236
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.66 E-value=0.13 Score=37.66 Aligned_cols=91 Identities=10% Similarity=-0.006 Sum_probs=64.3
Q ss_pred HHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020453 172 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 251 (326)
Q Consensus 172 C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~ 251 (326)
+......++...++...+.+... .+.. ......++.+....|++++|+..|++++++ .+.+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~----~P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------~P~~- 84 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQK----EPER-------EEAWRSLGLTQAENEKDGLAIIALNHARML-------DPKD- 84 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH----CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-
Confidence 34445667777777666655443 2322 234567888999999999999999998775 3332
Q ss_pred chhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 252 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 252 ~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
...+.++|.++..+|++++|+..|++++.+
T Consensus 85 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 85 ------IAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677899999999999999888877653
No 237
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.63 E-value=0.055 Score=52.79 Aligned_cols=99 Identities=9% Similarity=-0.041 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL--- 288 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 288 (326)
....++.+....|++++|+..|++++++. +.+ ...+.++|.++..+|++++|++.|++++++-
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 500 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERV-------GWR-------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE 500 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------CCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC-------cch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 34566777888899999999999987652 221 3456677788888888888888887777541
Q ss_pred -----------------------HHh-hcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453 289 -----------------------ESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 326 (326)
Q Consensus 289 -----------------------~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (326)
++. ..+|.++....++ +.++..+|++.+++..|++|
T Consensus 501 ~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~l--g~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 501 LAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGL--ARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp SHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHH--HHHHHHTTCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHH--HHHHHHcCCHHHHHHHHHhh
Confidence 111 2345555555555 55566666666666665543
No 238
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=94.59 E-value=0.054 Score=38.04 Aligned_cols=92 Identities=20% Similarity=0.099 Sum_probs=64.4
Q ss_pred HHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020453 171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 250 (326)
Q Consensus 171 ~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~ 250 (326)
.+.+....++...++..++.+... .+... .....++.+....+++++|+..|++++++. +.
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~- 72 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQL----DPEES-------KYWLMKGKALYNLERYEEAVDCYNYVINVI-------ED- 72 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHH----CCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------CC-
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh----CcCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------cc-
Confidence 344555667777777777665543 22222 244678889999999999999999987652 21
Q ss_pred CchhhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 020453 251 PSQVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAI 285 (326)
Q Consensus 251 ~~~~~~la~~l~~l~~~~~~~-~~~~~a~~~~~~~~ 285 (326)
......+.+++.++..+ |++++|++.+++++
T Consensus 73 ----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 73 ----EYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp ----TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred ----cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 00245677899999999 99999998887664
No 239
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.032 Score=39.54 Aligned_cols=60 Identities=8% Similarity=-0.060 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
+..+.++|.++...|++++|++.|++++.+ .|.++.+..++ +..+..++++.+++..|++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l--g~~~~~~g~~~~A~~~~~~ 63 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA------QPQNPVGYSNK--AMALIKLGEYTQAIQMCQQ 63 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHH--HHHHHHhcCHHHHHHHHHH
Confidence 456778899999999999999999988765 56666666677 7777777777777766654
No 240
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.39 E-value=0.013 Score=37.88 Aligned_cols=43 Identities=21% Similarity=0.600 Sum_probs=32.6
Q ss_pred CCcccccccccccCCCeecccCC-----cchHHhHhcCC------CCCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSH-----VYCKACISRFK------DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h-----~fC~~Cl~~~~------~CP~Cr~~~~ 65 (326)
+.-.|.||+.. ..+|..+||.. .|=..||.+|. .||.|+..+.
T Consensus 5 ~~~~CrIC~~~-~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEE-LGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEE-CSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecC-CCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 55689999987 56688899653 44467998884 3999998764
No 241
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=94.22 E-value=0.57 Score=36.23 Aligned_cols=97 Identities=13% Similarity=0.175 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHHHHH
Q 020453 166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL-KYYGGDL--QAARSYYVRSLNVRRD 242 (326)
Q Consensus 166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l-~~~~~~~--~~a~~~~~~sl~~~~~ 242 (326)
..+..++.+....++...++..++.+.... +.. ......++.+ ....+++ ++|+..|++++++
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~-------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~--- 110 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR----GEN-------AELYAALATVLYYQASQHMTAQTRAMIDKALAL--- 110 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----CSC-------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---
Confidence 344556677777888888888777666543 222 2244567777 6788898 9999999998765
Q ss_pred HhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 243 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 243 ~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
.+.+ ...+..+|.++..+|++++|+..|++++.+
T Consensus 111 ----~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 111 ----DSNE-------ITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp ----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----CCCc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 2222 345677899999999999999988877653
No 242
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.10 E-value=0.12 Score=37.16 Aligned_cols=60 Identities=12% Similarity=0.008 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
...+.++|.++...|++++|+..|++++.+ +|.......++ +..+..+|++.++...|++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDF------DPTYSVAWKWL--GKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH------CCCcHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 356778899999999999999999888754 45555556666 6677777777777666654
No 243
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.07 E-value=0.045 Score=38.73 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
...+.++|.++..+|++++|+..|++++.+ +|.......++ +.++..+|++.++...|++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~l--g~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET------DPDYVGTYYHL--GKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 345678899999999999999999888754 45665666666 7777777777777766654
No 244
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=93.92 E-value=0.05 Score=42.77 Aligned_cols=54 Identities=11% Similarity=-0.104 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 282 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~ 282 (326)
..+......|++++|+..|++++++.- .+ ...+..+|.++..+|++++|+..++
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P-------~~-------~~a~~~la~~~~~~g~~~~A~~~~~ 64 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQ-------SR-------GDVKLAKADCLLETKQFELAQELLA 64 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHH-------TS-------HHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-------Cc-------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345556667788888887777665321 11 2334455555566666665555443
No 245
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=93.66 E-value=0.096 Score=41.06 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCC--chhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE--EAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
..+.++|.++...|++++|+..|++++. .+|+ +.....++ +.++..+|+...++..|++
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~a~~~l--~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILK------VNLGAQDGEVKKTF--MDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT------TCTTTTTTHHHHHH--HHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH------hCcccChHHHHHHH--HHHHHHhCCCCcHHHHHHH
Confidence 4556788999999999999988886643 3443 23355556 6666666666555555543
No 246
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.17 E-value=0.094 Score=35.49 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.+..+..+|.++...|++++|+..|++++.+ .|.+.....++ +..+...+++.+++..|++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNL--GNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHH--HHHHHHHhhHHHHHHHHHH
Confidence 3556778899999999999999999988764 45555555556 6666666677766666554
No 247
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.06 E-value=0.77 Score=35.74 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcC-----------CHHHH
Q 020453 212 SLNKIGDLKYYGGDL---QAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-----------NEDVA 277 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~---~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~-----------~~~~a 277 (326)
...++|.+...++++ ..++..+++++...++..+-++... ..+.++|.+|..+| ++++|
T Consensus 38 a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~-------~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA 110 (158)
T 1zu2_A 38 NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD-------EAVWCIGNAYTSFAFLTPDETEAKHNFDLA 110 (158)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH-------HHHHHHHHHHHHhcccCcchhhhhccHHHH
Confidence 334555555444433 2333444444444444455566543 44556666666554 56666
Q ss_pred HHHHHHHHHHHHHhhcCCCchhHHh
Q 020453 278 VDGFQEAIKRLESLTLKPEEAGLEQ 302 (326)
Q Consensus 278 ~~~~~~~~~~~~~l~~~p~~~~~~~ 302 (326)
+++|++++++ +|++....+
T Consensus 111 ~~~~~kAl~l------~P~~~~y~~ 129 (158)
T 1zu2_A 111 TQFFQQAVDE------QPDNTHYLK 129 (158)
T ss_dssp HHHHHHHHHH------CTTCHHHHH
T ss_pred HHHHHHHHHh------CCCCHHHHH
Confidence 6666665544 565544433
No 248
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.97 E-value=0.47 Score=38.66 Aligned_cols=64 Identities=11% Similarity=-0.037 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
.-.++......|++++|+..|++.++. .+... .....+-++|.++..+|++++|++.|++++..
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~-------~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNR-------YPFGP----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 345666777889999999999998764 22211 12346778899999999999999888877653
No 249
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=92.39 E-value=0.33 Score=41.73 Aligned_cols=94 Identities=11% Similarity=-0.045 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
....++.+...+|++++|+..|+++++.. +... ...++..+ ..+....|++++|+..|+++++
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-------p~~~--~~~l~~a~---~~l~~~~~~~~eA~~~~~~~l~----- 194 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQD-------EDAT--LTQLATAW---VSLAAGGEKLQDAYYIFQEMAD----- 194 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH--HHHHHHHH---HHHHHCTTHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------cCcH--HHHHHHHH---HHHHhCchHHHHHHHHHHHHHH-----
Confidence 44567778888999999999999987651 2211 11111111 1223344777788777776654
Q ss_pred hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
..|+++.+..++ +..+..+|++.++...|++
T Consensus 195 -~~p~~~~~~~~l--a~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 195 -KCSPTLLLLNGQ--AACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp -HSCCCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred -hCCCcHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 367777777777 7777778888877777664
No 250
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=92.37 E-value=0.14 Score=41.64 Aligned_cols=56 Identities=18% Similarity=0.091 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcC----CHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG----NEDVAVDGFQEA 284 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~----~~~~a~~~~~~~ 284 (326)
+...++.+....+++++|+.+|+++.+. .....+.+||.++.. + ++++|+.+|+++
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQ----------------GDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4456777777778888888888887541 012344555555555 4 566666666655
No 251
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.31 E-value=0.083 Score=52.67 Aligned_cols=62 Identities=10% Similarity=0.089 Sum_probs=54.1
Q ss_pred CCcccccccccccCCCeecccC-CcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHHHHhcc
Q 020453 22 GPLSCMICQALLFECSKCTPCS-HVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDRFIEGH 84 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~-h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~~ 84 (326)
++|.|||-.++ ..+||++|-| ++|=+..|.+|.. ||.-|.++. .+.+|..+++.++.+....
T Consensus 890 ~~F~cPIs~~l-M~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~ 958 (968)
T 3m62_A 890 DEFLDPLMYTI-MKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQK 958 (968)
T ss_dssp GGGBCTTTCSB-CSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred HHhCCcchhhH-HhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHHHH
Confidence 68999999999 4779999998 6999999999964 998888887 4889999999999987754
No 252
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.74 E-value=0.1 Score=37.38 Aligned_cols=62 Identities=10% Similarity=-0.016 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-cCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453 262 AKVADVDRSIGNEDVAVDGFQEAIKRLESLT-LKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 262 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
-.||..+...|++..|+.+|++|+.....-. ..+..+.+...+ +..+.-+|++..++..+++
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L--~~~~~~~g~~~~A~~~~~~ 71 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYL--SYAVYQQGDLDKALLLTKK 71 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHH--HHHHHHccCHHHHHHHHHH
Confidence 3578999999999999999999998875421 123345567777 7777777777777666654
No 253
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.02 E-value=2.1 Score=34.66 Aligned_cols=62 Identities=10% Similarity=-0.055 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020453 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 283 (326)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~ 283 (326)
...-.++.+....+++++|+..|++.++.. +.+. .....+..++.++..+|++++|++.++.
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~----~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-------PDTQ----ATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTSH----HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-------cCCC----ccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 333467778888899999999998886652 2211 2335678899999999999999877653
No 254
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=90.26 E-value=0.54 Score=38.06 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHH
Q 020453 167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG----DLQAARSYYVRSLNVRRD 242 (326)
Q Consensus 167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~----~~~~a~~~~~~sl~~~~~ 242 (326)
.+..++.+....++...++..++.+.+. + . ..+..+|+.+... + ++++|+.+|+++.+.
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g--~-------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--- 82 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQ----G--D-------GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--- 82 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHT----T--C-------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc----C--C-------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---
Confidence 3445555655667777777776655431 1 1 2345677777766 5 899999999988431
Q ss_pred HhhcCCCCCchhhhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 020453 243 AVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIK 286 (326)
Q Consensus 243 ~~~~~~~~~~~~~~la~~l~~l~~~~~~----~~~~~~a~~~~~~~~~ 286 (326)
.......+||.++.. .+++++|+.+|+++.+
T Consensus 83 -------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 83 -------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp -------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred -------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 124456677777776 7788888888776653
No 255
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=89.96 E-value=0.21 Score=34.54 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=34.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchh-HHhhccchhhhHHHHhHHhcCccccc
Q 020453 264 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAG-LEQRCWNSSTTNFQKNHLNQLPKFRS 325 (326)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (326)
.|..+...|++++|+..|++++++ +|.+.. +..++ +..+..++++.+++..|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~l--g~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT------EPVGKDEAYYLM--GNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH------CSSTHHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 466667778887777777766543 455555 55555 6666666676666666554
No 256
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=89.47 E-value=1.1 Score=47.13 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
...+++..+...|++++|+..|.++ . -...+.+++..+..+|++++|+++|+.+.+..
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA------------d-------D~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA------------D-------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc------------C-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 3445666777778888888888664 1 13455668888999999999999998876543
No 257
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=88.33 E-value=2.5 Score=31.47 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 020453 211 VSLNKIGDLKYY----GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQ 282 (326)
Q Consensus 211 ~~~~~l~~l~~~----~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~----~~~~~~a~~~~~ 282 (326)
....+++.+... .+++++|+.+|+++.+. .......+|+.++.. .+++++|+.+|+
T Consensus 58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 121 (138)
T 1klx_A 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121 (138)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 455788888877 78999999999998542 124567889999988 899999999999
Q ss_pred HHHHH
Q 020453 283 EAIKR 287 (326)
Q Consensus 283 ~~~~~ 287 (326)
++.+.
T Consensus 122 ~Aa~~ 126 (138)
T 1klx_A 122 KACRL 126 (138)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 88653
No 258
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=88.21 E-value=0.058 Score=37.65 Aligned_cols=48 Identities=25% Similarity=0.608 Sum_probs=28.2
Q ss_pred CCCCCCcccCCcccccccccccCCCeecccCCcchHHhHhcCCC---CCCCCccccc
Q 020453 13 GYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD---CPLCGADIEK 66 (326)
Q Consensus 13 ~~~~~~~~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~---CP~Cr~~~~~ 66 (326)
|...+...++ ..||.|...| + +. =++.+|..|-..+.. ||.|.+++..
T Consensus 23 ~~~~~~~~M~-~~CP~Cq~eL-~-~~---g~~~hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 23 GLVPRGSHME-LHCPQCQHVL-D-QD---NGHARCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp --------CC-CBCSSSCSBE-E-EE---TTEEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccccCccccc-ccCccCCCcc-e-ec---CCEEECccccchhhccccCcchhhHHHH
Confidence 3333333334 8999999875 3 22 134458888877643 9999988663
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.12 E-value=5.3 Score=31.14 Aligned_cols=65 Identities=15% Similarity=-0.019 Sum_probs=47.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 222 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 222 ~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
..+.|+.|+....-.+.+.+. ..+.......+..+..+|+++...|+|.+|..+|++++...+.+
T Consensus 32 d~~LY~sA~~La~lLlSl~~~-----~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 32 AAGLHSNVRLLSSLLLTLSNN-----NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH-----STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HhhhHHHHHHHHHHHHHhhcC-----CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 456777777666665555322 12222233467788999999999999999999999999999866
No 260
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=87.89 E-value=0.0032 Score=43.14 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=23.6
Q ss_pred CCceeccCCcccc------hhhHHHHHHHhhhcCHHHHHHHHHHHHHHHHH-HH
Q 020453 105 KKVIYEDVSMERG------AFLVQQAMRAFRAQNVESAKSRLSLCTEDIRD-QI 151 (326)
Q Consensus 105 ~~~~~C~~C~~~~------~C~~c~~~~~~~~~~~~~a~~~~~~c~~~l~~-~l 151 (326)
+..+.|+.|.+.+ .|+.|.+ ++|+.|+.. |.
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~----------------s~C~~hl~~~H~ 65 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEV----------------SYCDECLKATHP 65 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTE----------------EECHHHHHHHSC
T ss_pred CCCccCCcCCCCCCCCCeeEccCccc----------------hhhhhhhHhhcC
Confidence 3568899997633 2999999 889888875 54
No 261
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=87.41 E-value=0.0018 Score=42.55 Aligned_cols=42 Identities=7% Similarity=0.015 Sum_probs=32.1
Q ss_pred HHHHHH-HHHHHHHH---------HHHH-HhCCchhHhhHHHHHHHHHHhCCC
Q 020453 159 ELCSQL-GAVLGMLG---------DCCR-AMGDADAAVAYFADSVEFLMKLPM 200 (326)
Q Consensus 159 ~~C~~H-~~~l~~~C---------~~~~-~~h~~H~~~~~~e~~~~~~~~L~~ 200 (326)
..|+.| ++.+++|| .|.. ..|++|.++++.+++...+.+|..
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~~a~~~~k~~L~~ 61 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPLQSVFQGQKTESGP 61 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTTSSCEECTTTCCSSCCCCSSC
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCCCCCeeCHHHHHHHHHHHHHH
Confidence 479999 89999999 4433 368889999998887766665543
No 262
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=86.94 E-value=1.3 Score=30.75 Aligned_cols=42 Identities=24% Similarity=0.598 Sum_probs=32.4
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~ 65 (326)
+-+.|..|.-. ++ -.+.-..|-.|..|+..... ||.|...++
T Consensus 27 G~~nCKsCWf~-~k-~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFE-NK-GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSC-CS-SEEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred CcccChhhccc-cC-CeeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 56789999877 34 34444567789999988764 999999887
No 263
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=86.89 E-value=10 Score=32.15 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
....++.++..+|++++|.+.|++++.
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 344556666667777777666666554
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.57 E-value=3.3 Score=32.34 Aligned_cols=102 Identities=12% Similarity=-0.018 Sum_probs=59.8
Q ss_pred HhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCC--------
Q 020453 177 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS-------- 248 (326)
Q Consensus 177 ~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~-------- 248 (326)
..+.+..++.+..-....-.. .+... --....+..-.+++.....++|..|...|+++|+.++.+.....
T Consensus 32 d~~LY~sA~~La~lLlSl~~~-~~~~~-sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ 109 (167)
T 3ffl_A 32 AAGLHSNVRLLSSLLLTLSNN-NPELF-SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS 109 (167)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH-STTSS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------
T ss_pred HhhhHHHHHHHHHHHHHhhcC-Ccccc-cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 345556666666554433321 11100 01223445667899999999999999999999998874321110
Q ss_pred ---CCCchhhhHHHHHHHHHHHHHhcCCHHHHHHH
Q 020453 249 ---NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG 280 (326)
Q Consensus 249 ---~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~ 280 (326)
.....++..+...-+++..+..+++.++|+..
T Consensus 110 ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 110 ASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 00011233344455689999999997766654
No 265
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=86.45 E-value=0.0083 Score=37.08 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=24.3
Q ss_pred HHHHHH-HHHHHHHH---------HHHHHhCCchhHhhHHHHH
Q 020453 159 ELCSQL-GAVLGMLG---------DCCRAMGDADAAVAYFADS 191 (326)
Q Consensus 159 ~~C~~H-~~~l~~~C---------~~~~~~h~~H~~~~~~e~~ 191 (326)
..|+.| ++.|++|| .|....|++|.++++.+++
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~~H~~~~l~ea~ 49 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHKDHQYQFLEDAV 49 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTTTTCCEEETTC--
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcCCCCceecHHHHh
Confidence 469999 89999999 4444568889988876654
No 266
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=85.08 E-value=0.83 Score=34.21 Aligned_cols=55 Identities=9% Similarity=0.019 Sum_probs=43.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 020453 216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIK 286 (326)
Q Consensus 216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~----~~~~~~a~~~~~~~~~ 286 (326)
++.+......+++|+.+|+++.+. .......+|+.++.. .+++++|+.+|+++.+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~----------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL----------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG 89 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC----------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc
Confidence 777776667788888888888543 124677889999888 8999999999998865
No 267
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=83.30 E-value=0.0063 Score=38.17 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHH---------HHHH-HhCCchhHhhHHHH
Q 020453 159 ELCSQLGAVLGMLG---------DCCR-AMGDADAAVAYFAD 190 (326)
Q Consensus 159 ~~C~~H~~~l~~~C---------~~~~-~~h~~H~~~~~~e~ 190 (326)
..|+.|++.|++|| .|.. ..|++|.++++.++
T Consensus 9 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ea 50 (53)
T 2did_A 9 SLCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVPLSGP 50 (53)
T ss_dssp CBCTTTCCBCCEEESSSCSEECHHHHTSSTTTTSCEEECCCT
T ss_pred CcChhhCCeeeEEeCCCCeEEeccccCCCCCCCCcEeeHHHH
Confidence 47999999999999 3333 45888988877654
No 268
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=83.09 E-value=0.0021 Score=44.81 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=34.9
Q ss_pred HHHHHH-HHHHHHHH---------HHHH-HhCCchhHhhHHHHHHHHHHhCCCChhH
Q 020453 159 ELCSQL-GAVLGMLG---------DCCR-AMGDADAAVAYFADSVEFLMKLPMDDLE 204 (326)
Q Consensus 159 ~~C~~H-~~~l~~~C---------~~~~-~~h~~H~~~~~~e~~~~~~~~L~~~~~~ 204 (326)
..|+.| ++.+++|| .|.. ..|++|.+.++.+++...+.+|......
T Consensus 19 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ea~~~~k~~L~~~l~~ 75 (84)
T 2dja_A 19 ITCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLTN 75 (84)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHTSTTTTCCBCCCCSSCCCCCCCCCCCCCC
T ss_pred CcCcCcCCccccEEcCCCCceEcccCcCCCCCCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 479999 68999999 4443 4688899999998888777766654443
No 269
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=83.03 E-value=6.3 Score=26.82 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 256 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 256 ~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
+.|..+-..|......|++++|+.+|.++++.+...
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 445556666777788899999999999999999886
No 270
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=82.72 E-value=0.73 Score=40.89 Aligned_cols=58 Identities=24% Similarity=0.472 Sum_probs=42.8
Q ss_pred CcccccccccccCCCeecccCCcchHHh--------HhcCCCCCCCCcccc--cccccHHHHHHHHHH
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKAC--------ISRFKDCPLCGADIE--KIEADTTLQDVVDRF 80 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~C--------l~~~~~CP~Cr~~~~--~~~~n~~l~~~~~~~ 80 (326)
.|.||+=...+..+-+...|.|.-|.+- -.+.|.||.|.+.+. ++..+..+..++...
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 5889998888655455578999855432 234588999999886 688888888877643
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.43 E-value=1.6 Score=39.37 Aligned_cols=72 Identities=8% Similarity=-0.041 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
.+.+++.++...|+|.+|...+.+.++..+.. .+.. .+....-....++..++++.++...|.++..+...+
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-----dd~~---~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKL-----DDKN---LLVEVQLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-----SCTH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-----ccch---hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 45689999999999999999998887765431 1221 233334445688899999999999999998887654
No 272
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=81.65 E-value=3.9 Score=27.51 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHH
Q 020453 263 KVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQK 314 (326)
Q Consensus 263 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 314 (326)
++|.-+-..|+|+.|+.+|+.++..+.+.-..-+++.....| ..++.-+.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW--~~~~~ei~ 66 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKW--QQVWQEIN 66 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhH--HHHHHHHH
Confidence 457788888999999999999999998872222355566666 55555544
No 273
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=81.58 E-value=0.69 Score=38.67 Aligned_cols=44 Identities=25% Similarity=0.685 Sum_probs=34.2
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC------CCCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~------~CP~Cr~~~~ 65 (326)
....|.+|..+....-++-.|+|.|=..|+..|+ .||.|+...+
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 3668999999855444455589999899998886 3999998765
No 274
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=81.14 E-value=2.8 Score=38.42 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=19.4
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYY----GGDLQAARSYYVRSLN 238 (326)
Q Consensus 212 ~~~~l~~l~~~----~~~~~~a~~~~~~sl~ 238 (326)
+...++.+... .+++++|+..|+++.+
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 44567777766 7788888888887754
No 275
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=80.92 E-value=11 Score=25.84 Aligned_cols=47 Identities=11% Similarity=0.039 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 226 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 226 ~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
.++|...|++++++ ++.+ ...+..+|..+...|+|++|+.+++++++
T Consensus 25 ~~~A~~~l~~AL~~-------dp~~-------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQL-------EPYN-------EAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH-------CcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67888888777664 4443 45666789999999999999988886543
No 276
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=80.16 E-value=1 Score=39.84 Aligned_cols=57 Identities=18% Similarity=0.416 Sum_probs=42.5
Q ss_pred CcccccccccccCCCeecccCCcchHHhH--------hcCCCCCCCCcccc--cccccHHHHHHHHH
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACI--------SRFKDCPLCGADIE--KIEADTTLQDVVDR 79 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl--------~~~~~CP~Cr~~~~--~~~~n~~l~~~~~~ 79 (326)
.|.||+=...+..+-+...|.|.-|-+-. .+.|.||.|.+.+. ++..+..+.+++..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 57899988876554555789998543322 34588999999887 68888888888764
No 277
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=79.06 E-value=11 Score=25.52 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 256 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 256 ~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
+.|..+-..|......|++++|+.+|.++++.+...
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 345555566666778899999999999999999886
No 278
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.49 E-value=0.014 Score=37.43 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHH---------HHHH-HhCCchhHhhHHHH
Q 020453 159 ELCSQLGAVLGMLG---------DCCR-AMGDADAAVAYFAD 190 (326)
Q Consensus 159 ~~C~~H~~~l~~~C---------~~~~-~~h~~H~~~~~~e~ 190 (326)
..|+.|++.|++|| .|.. ..|++|.+.++.++
T Consensus 15 ~~C~~H~e~L~lfC~~d~~~iC~~C~~s~eH~~H~~~~l~ea 56 (59)
T 2yrg_A 15 DHCARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFPTSGP 56 (59)
T ss_dssp SBCTTTCCBCCEEETTTCSEECHHHHTSTTTTTCCEEECCSS
T ss_pred ccChhhCceeeeecCCCCcEEecccCCCCcCCCCcEeeHHHH
Confidence 47999999999999 3333 45888988776543
No 279
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=75.10 E-value=14 Score=31.55 Aligned_cols=96 Identities=13% Similarity=-0.071 Sum_probs=61.9
Q ss_pred HHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC-CC
Q 020453 171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH-SN 249 (326)
Q Consensus 171 ~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~-~~ 249 (326)
.+..+...++...++...+.. +.-..+ . .-....-.+|.+...+|++++|+..|++++. ... +.
T Consensus 141 ~a~l~~~~~r~~dA~~~l~~a------~~~~d~-~--~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~ 205 (282)
T 4f3v_A 141 KAVVYGAAERWTDVIDQVKSA------GKWPDK-F--LAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEA 205 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHTTG------GGCSCH-H--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHh------hccCCc-c--cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCcc
Confidence 334555666776666555411 110011 0 1133556789999999999999999998741 111 21
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 250 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 250 ~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
. ....+-++|.++..+|+.++|...|++++.+
T Consensus 206 ---~---~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 206 ---C---ARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp ---T---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---c---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1 2345677899999999999999988877654
No 280
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=74.68 E-value=12 Score=34.12 Aligned_cols=59 Identities=12% Similarity=0.047 Sum_probs=38.8
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 020453 214 NKIGDLKYY----GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAI 285 (326)
Q Consensus 214 ~~l~~l~~~----~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~----~~~~~~a~~~~~~~~ 285 (326)
..++.+... .+++++|+..|+++++. .....+.+||.++.. .+++++|..+|++++
T Consensus 367 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 367 FNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------------GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 344555544 45566666665555431 113456778888887 789999999999888
Q ss_pred HHH
Q 020453 286 KRL 288 (326)
Q Consensus 286 ~~~ 288 (326)
+.-
T Consensus 431 ~~~ 433 (490)
T 2xm6_A 431 TND 433 (490)
T ss_dssp HHH
T ss_pred HCC
Confidence 765
No 281
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=74.64 E-value=5.2 Score=34.04 Aligned_cols=12 Identities=17% Similarity=0.080 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 020453 227 QAARSYYVRSLN 238 (326)
Q Consensus 227 ~~a~~~~~~sl~ 238 (326)
++|+..|+++++
T Consensus 33 ~~a~~~~~~al~ 44 (308)
T 2ond_A 33 KRVMFAYEQCLL 44 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555555544
No 282
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=74.12 E-value=2.5 Score=36.24 Aligned_cols=93 Identities=5% Similarity=-0.144 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 293 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~ 293 (326)
-.++.+....+++++|+..|++++.. .. ........-++|.++..+|++++|+..|+++... ..
T Consensus 139 ~~~a~l~~~~~r~~dA~~~l~~a~~~--------~d----~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g----~~ 202 (282)
T 4f3v_A 139 WMKAVVYGAAERWTDVIDQVKSAGKW--------PD----KFLAGAAGVAHGVAAANLALFTEAERRLTEANDS----PA 202 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTGGGC--------SC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcc--------CC----cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC----CC
Confidence 35566888889999999888643211 10 0011335667899999999999999999977520 11
Q ss_pred CCC-chhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 294 KPE-EAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 294 ~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
+|. ......++ +..+.-+|+..++...|+
T Consensus 203 ~P~~~~da~~~~--glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 203 GEACARAIAWYL--AMARRSQGNESAAVALLE 232 (282)
T ss_dssp TTTTHHHHHHHH--HHHHHHHTCHHHHHHHHH
T ss_pred CccccHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence 143 23344444 666666776666655554
No 283
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=72.31 E-value=13 Score=27.15 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 254 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 254 ~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
..+.|..+-..|......|+|++|+.+|.++++.+-..
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~a 51 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV 51 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 34455556666666667799999999999999998876
No 284
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=71.04 E-value=13 Score=25.70 Aligned_cols=38 Identities=24% Similarity=0.091 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 254 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 254 ~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
+.+.|..+-..|......|++++|+.+|.++++.+...
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a 48 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQV 48 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 34556666667777778899999999999999999887
No 285
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=70.53 E-value=12 Score=28.66 Aligned_cols=30 Identities=7% Similarity=-0.047 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
...+-++|..+..+|+|++|+.+++.++++
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456778899999999999999988876654
No 286
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=70.22 E-value=19 Score=38.12 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
.++|....+.|+|++|+.+|.++ .....++.++..+|++++|++.+.++...
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA----------------------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV----------------------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh----------------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 35777777778888888888773 34566778888888888888888777443
No 287
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=69.84 E-value=16 Score=24.97 Aligned_cols=40 Identities=23% Similarity=0.078 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 020453 257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE 296 (326)
Q Consensus 257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~ 296 (326)
-+..+-.-|.-....|++++|+.+|.++++.+-.. ...|+
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d 55 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKD 55 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 34445555666677899999999999999998877 44443
No 288
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=67.86 E-value=26 Score=31.10 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
-++-.....|++++|+..+++++++. +. +..+..+|.+++..|+.++|++.|.+|+.+
T Consensus 282 alal~~l~~gd~d~A~~~l~rAl~Ln-------~s--------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 282 IKAVSALVKGKTDESYQAINTGIDLE-------MS--------WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-------CC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC-------CC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34444445599999999999998873 11 234566789999999999999999888765
No 289
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.40 E-value=0.072 Score=33.79 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHH---------HHHH-HhCCchhHhh
Q 020453 159 ELCSQLGAVLGMLG---------DCCR-AMGDADAAVA 186 (326)
Q Consensus 159 ~~C~~H~~~l~~~C---------~~~~-~~h~~H~~~~ 186 (326)
..|..|++.|++|| .|.. ..|++|.+++
T Consensus 19 ~~C~~H~e~L~lfC~~d~~~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 19 GICPKHQEALKLFCEVDEEAICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp SBCTTTCCBCCEEETTTTEEECHHHHHSHHHHSSCEEC
T ss_pred CcChhhCceeeEEcCCCCcEEecccCCCCCCCCCcEec
Confidence 47999999999999 3333 4577776543
No 290
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=65.87 E-value=0.037 Score=32.59 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHH---------HHHH-HhCCchhHhh
Q 020453 160 LCSQLGAVLGMLG---------DCCR-AMGDADAAVA 186 (326)
Q Consensus 160 ~C~~H~~~l~~~C---------~~~~-~~h~~H~~~~ 186 (326)
.|+.|++.+++|| .|.. ..|++|.+.+
T Consensus 5 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 5 KCSEHDERLKLYCKDDGTLSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp CCCSSCSSCCCCCCSSSSSSCCTTSSCSSCTTCCCCC
T ss_pred cchhhCCeeeEEeCCCCeEEeccCCCCCCCCCCcEec
Confidence 6899999999999 2322 3577787654
No 291
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=64.34 E-value=8.6 Score=22.86 Aligned_cols=39 Identities=21% Similarity=0.390 Sum_probs=25.1
Q ss_pred CCCCCCCCCCCCCCCCcccCCcccccccccccCCCeecccCCcchHHh
Q 020453 3 SASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKAC 50 (326)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~C 50 (326)
.++.+-+||.|.+-..=...=..|+.|... |.. .||..|
T Consensus 2 ~~p~~~pC~~GsswS~DLdKCmdcs~C~~~----p~S-----DFC~gc 40 (53)
T 2kmz_A 2 QAPGTAPCSRGSSWSADLDKCMDCASCRAR----PHS-----DFCLGC 40 (53)
T ss_dssp CCSSCCSSCSSCBCCTTTTCCBCSTTCSSC----CCC-----HHHHHH
T ss_pred CCCCcCcCCCCcccchhhhhhhccccCCCC----ccc-----cccccc
Confidence 467888999986655433344566666544 433 388888
No 292
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=64.29 E-value=20 Score=24.24 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453 254 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 254 ~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l 291 (326)
..+.+..+-..|.-....|++++|+.+|.++++.+-..
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a 46 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA 46 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 33455556666666677799999999999999998776
No 293
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=63.68 E-value=14 Score=28.09 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=35.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHhhccchhhhHHHHhHH
Q 020453 264 VADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHL 317 (326)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~ 317 (326)
.+......|+++++-....++..|+..| ..+.+ ..+..++ ..+|.|+...+
T Consensus 39 ~A~~aie~~d~~~k~~~i~KA~~Ii~eL~~sLd~e-geiA~nL--~~LY~y~~~~L 91 (145)
T 1vh6_A 39 LAAQAIENDDMERKNENLIKAQNIIQELNFTLNRN-IELSASM--GAMYDYMYRRL 91 (145)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTHH--HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHH--HHHHHHHHHHH
Confidence 3444555688888888888888888887 33444 5677777 77777776544
No 294
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=62.63 E-value=2.2 Score=28.86 Aligned_cols=39 Identities=23% Similarity=0.600 Sum_probs=25.1
Q ss_pred Cccccc--ccccccCC----Ceec------ccCCcchHHhHhcCCCCCCCCc
Q 020453 23 PLSCMI--CQALLFEC----SKCT------PCSHVYCKACISRFKDCPLCGA 62 (326)
Q Consensus 23 ~l~C~i--C~~~l~~~----p~~l------~C~h~fC~~Cl~~~~~CP~Cr~ 62 (326)
..-||. |...+..+ ++.= .|++.||..|...|=. -.|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 445776 77653322 2222 5899999999998855 55544
No 295
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=60.70 E-value=1.7 Score=29.48 Aligned_cols=37 Identities=24% Similarity=0.725 Sum_probs=23.9
Q ss_pred cccccccccccCCCeecccCCcchHHhHhcCC---CCCCCCcccc
Q 020453 24 LSCMICQALLFECSKCTPCSHVYCKACISRFK---DCPLCGADIE 65 (326)
Q Consensus 24 l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~---~CP~Cr~~~~ 65 (326)
+.||.|...+..+-. +.+|..|-..+. .||.|..++.
T Consensus 3 ~~CP~C~~~l~~~~~-----~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-----TAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS-----EEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC-----ceECccccccCCCcccCcchhhHHH
Confidence 678999877533222 334777766553 2999988765
No 296
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=60.50 E-value=85 Score=28.62 Aligned_cols=59 Identities=5% Similarity=0.039 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 238 (326)
Q Consensus 170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~ 238 (326)
.+.......++...+..+++.+.. +.+.... ......+.+....+++++|+..|+++++
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLA----IEDIDPT------LVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----SSSSCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhC----ccccCch------HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 344444455666667666665543 2332211 1334445555556677788888887764
No 297
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=59.88 E-value=3.3 Score=29.45 Aligned_cols=31 Identities=26% Similarity=0.586 Sum_probs=20.3
Q ss_pred cCCCeecccCCcchHHhHhcCCCCCCCCcccc
Q 020453 34 FECSKCTPCSHVYCKACISRFKDCPLCGADIE 65 (326)
Q Consensus 34 ~~~p~~l~C~h~fC~~Cl~~~~~CP~Cr~~~~ 65 (326)
..+|++..||+.|+ .=+..-..||.|+..-.
T Consensus 65 v~p~~C~~CG~~F~-~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 65 IKPAQCRKCGFVFK-AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp ECCCBBTTTCCBCC-CCSSCCSSCSSSCCCCB
T ss_pred EECcChhhCcCeec-ccCCCCCCCcCCCCCcc
Confidence 45689999999991 11112234999997644
No 298
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=58.92 E-value=0.16 Score=30.73 Aligned_cols=29 Identities=10% Similarity=0.352 Sum_probs=20.9
Q ss_pred HHHHHHH-HHHHHHH--------HHHH--HhCCchhHhhH
Q 020453 159 ELCSQLG-AVLGMLG--------DCCR--AMGDADAAVAY 187 (326)
Q Consensus 159 ~~C~~H~-~~l~~~C--------~~~~--~~h~~H~~~~~ 187 (326)
..|+.|. +.+++|| ..|. ..|++|.++++
T Consensus 7 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 7 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp CBCSSSTTSBCCEEETTTTEEECHHHHHHSTTTTSCEEEC
T ss_pred CcCCCCCCccccEEcCCCCeeEcccccCCCcCCCCcEEeC
Confidence 4699998 8899999 3343 35888887654
No 299
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=58.24 E-value=31 Score=25.59 Aligned_cols=51 Identities=12% Similarity=-0.005 Sum_probs=36.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCc-hhHHhhccchhhhHHHHhHH
Q 020453 265 ADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRCWNSSTTNFQKNHL 317 (326)
Q Consensus 265 ~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~-~~~~~~~~~~~~~~~~~~~~ 317 (326)
+......|+++++-....++..|+..| ..+.+. ..+..++ ..+|.|+...+
T Consensus 43 A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL--~~LY~y~~~~L 96 (131)
T 3iqc_A 43 AKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYL--TGLYTHQIKVL 96 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHH--HHHHHHHHHHH
Confidence 444455688888888889999998888 444443 3577777 77787777554
No 300
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=58.23 E-value=13 Score=33.83 Aligned_cols=27 Identities=0% Similarity=-0.112 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGG---DLQAARSYYVRSLN 238 (326)
Q Consensus 212 ~~~~l~~l~~~~~---~~~~a~~~~~~sl~ 238 (326)
....++.+....+ ++++|+..|+++.+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~ 207 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVS 207 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence 3456777777777 78888888887755
No 301
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=57.94 E-value=43 Score=24.77 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=38.1
Q ss_pred HHHHHhcCCH-HHH---HHHHHHHHHHHHHh--hcCCCc-hhHHhhccchhhhHHHHhHH
Q 020453 265 ADVDRSIGNE-DVA---VDGFQEAIKRLESL--TLKPEE-AGLEQRCWNSSTTNFQKNHL 317 (326)
Q Consensus 265 ~~~~~~~~~~-~~a---~~~~~~~~~~~~~l--~~~p~~-~~~~~~~~~~~~~~~~~~~~ 317 (326)
+......|++ +++ -+...++..|+..| ..+.+. ..+..++ ..+|.|+...+
T Consensus 36 A~~ai~~~d~~~~k~~~~~~i~KA~~Ii~eL~~sLd~e~GgeiA~nL--~~LY~y~~~~L 93 (130)
T 1orj_A 36 AIEIYDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAKNL--DTIYTIILNTL 93 (130)
T ss_dssp HHHTGGGTTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcHHHHHH--HHHHHHHHHHH
Confidence 3333445788 777 78889999999888 455554 4688888 88999988877
No 302
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=57.66 E-value=7.4 Score=35.39 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=12.9
Q ss_pred HHHHHH-H--HhcCCHHHHHHHHHHHH
Q 020453 214 NKIGDL-K--YYGGDLQAARSYYVRSL 237 (326)
Q Consensus 214 ~~l~~l-~--~~~~~~~~a~~~~~~sl 237 (326)
.+++.+ . ...+++++|+.+|+++.
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 344544 2 23456666666666654
No 303
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=57.26 E-value=55 Score=29.94 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 260 SLAKVADVDRSIGNEDVAVDGFQEAIK 286 (326)
Q Consensus 260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (326)
....++.++...|++++|...|+++++
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 344567777778888888887777664
No 304
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=54.81 E-value=6.9 Score=35.82 Aligned_cols=54 Identities=24% Similarity=0.339 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~ 287 (326)
....+|......|.+++|+.+|.++ .....++.++..+|+++.|++.+.++..+
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~ 177 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------------SNFGRLASTLVHLGEYQAAVDGARKANST 177 (449)
T ss_dssp -------------CTTTHHHHHHHT----------------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----------------------hhHHHHHHHHHHhccHHHHHHHHHHcCCc
Confidence 5677888888888999999988865 24667889999999999999999888544
No 305
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=54.46 E-value=13 Score=24.90 Aligned_cols=34 Identities=38% Similarity=0.823 Sum_probs=24.6
Q ss_pred cCCcccccccccccCCCeeccc----CCcchHHhHhcCC
Q 020453 21 IGPLSCMICQALLFECSKCTPC----SHVYCKACISRFK 55 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p~~l~C----~h~fC~~Cl~~~~ 55 (326)
...|.|.+|.+.| .+--...| .|.||..|-....
T Consensus 13 ~a~l~CtlC~erL-EdtHFVQCPsv~~HkFCFpCsr~sI 50 (93)
T 2cs3_A 13 SGPLCCTICHERL-EDTHFVQCPSVPSHKFCFPCSRESI 50 (93)
T ss_dssp CCSCCCSSSCSCC-SSTTSEECSSCSSCEECHHHHHHHH
T ss_pred CCeeEeecchhhh-ccCceeeCCCccCCeeeccccHHHH
Confidence 4679999999985 44333333 7999999987663
No 306
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=52.77 E-value=4.7 Score=27.65 Aligned_cols=42 Identities=29% Similarity=0.765 Sum_probs=30.4
Q ss_pred CCccccccccc--------ccCCCeecccCCcchHHhHhcC-----CCCCCCCcccc
Q 020453 22 GPLSCMICQAL--------LFECSKCTPCSHVYCKACISRF-----KDCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~--------l~~~p~~l~C~h~fC~~Cl~~~-----~~CP~Cr~~~~ 65 (326)
..-.|.||.+. +|. ..-.|+-..|+.|.+-- ..||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FV--AC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFV--ACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCC--SCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEE--eeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 44689999885 222 34468989999999532 24999998876
No 307
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=49.63 E-value=8.5 Score=29.14 Aligned_cols=39 Identities=28% Similarity=0.613 Sum_probs=25.2
Q ss_pred CcccccccccccCCCeecccCCcchHHhHhc---------------CCCCCCCCc
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACISR---------------FKDCPLCGA 62 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~---------------~~~CP~Cr~ 62 (326)
+-.|.+|.+- -.---.-.|..+||..||.+ .|.||.|+.
T Consensus 63 ~d~C~vC~~G-G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEG-GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCC-SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCC-CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456666653 22112236888999999972 367999974
No 308
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=49.59 E-value=13 Score=25.80 Aligned_cols=44 Identities=20% Similarity=0.399 Sum_probs=33.3
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCCC--CCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD--CPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~--CP~Cr~~~~ 65 (326)
+=|.|..|...|...+....=+..||..|..+.+. |..|...+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 45889999988655455566778899999987753 888887765
No 309
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=49.44 E-value=2 Score=23.79 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=6.4
Q ss_pred CCccccccccc
Q 020453 22 GPLSCMICQAL 32 (326)
Q Consensus 22 ~~l~C~iC~~~ 32 (326)
+.|+||+|...
T Consensus 4 EGFiCP~C~~~ 14 (34)
T 3mjh_B 4 EGFICPQCMKS 14 (34)
T ss_dssp EEEECTTTCCE
T ss_pred cccCCcHHHHH
Confidence 34566666655
No 310
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=48.48 E-value=69 Score=28.23 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 020453 280 GFQEAIKRLES 290 (326)
Q Consensus 280 ~~~~~~~~~~~ 290 (326)
.|++.++.|.+
T Consensus 180 ~ye~qqKQL~q 190 (390)
T 1deq_A 180 DYKNQQKQLEQ 190 (390)
T ss_pred HHHHHHHHHHh
Confidence 33333333433
No 311
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=47.74 E-value=4.4 Score=27.72 Aligned_cols=29 Identities=17% Similarity=0.585 Sum_probs=20.0
Q ss_pred cccccccccCC----Ceec-ccCCcchHHhHhcC
Q 020453 26 CMICQALLFEC----SKCT-PCSHVYCKACISRF 54 (326)
Q Consensus 26 C~iC~~~l~~~----p~~l-~C~h~fC~~Cl~~~ 54 (326)
||-|...+..+ ++.= .|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 88887753322 2333 39999999998877
No 312
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=45.81 E-value=58 Score=22.86 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 020453 203 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA 243 (326)
Q Consensus 203 ~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~ 243 (326)
..+...+++.+.-+..|....-.+++++..|++.+++.+.-
T Consensus 30 ~sFEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C 70 (100)
T 1vp7_A 30 QDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVC 70 (100)
T ss_dssp CSHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34666677777777777766778999999999998877653
No 313
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=45.07 E-value=35 Score=21.87 Aligned_cols=42 Identities=21% Similarity=0.536 Sum_probs=26.3
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcC--------CCCCCCCccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRF--------KDCPLCGADI 64 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~--------~~CP~Cr~~~ 64 (326)
..-.|.+|.+- -.--..-.|...|=..|+... |.||.|....
T Consensus 11 ~~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 44568899764 221222347777778888533 5699997643
No 314
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=45.02 E-value=92 Score=26.05 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHHHh
Q 020453 227 QAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG----FQEAIKRLESL 291 (326)
Q Consensus 227 ~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~l 291 (326)
+.+...|+++.++.+.. -.+.++ ..+.-.||---..|+.+++.++|..+ |.+++..+..+
T Consensus 152 e~a~~aY~~A~~iA~~~--L~pthP---irLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L 215 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTE--LAPTHP---IRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTL 215 (260)
T ss_dssp HHHHHHHHHHHHHHHHH--SCTTCH---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc--CCCCCc---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhhhcc
Confidence 46777888888876532 222322 22444566666889999999998854 55556666666
No 315
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=42.91 E-value=57 Score=29.75 Aligned_cols=72 Identities=13% Similarity=0.067 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HH------------HhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVR--RD------------AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVA 277 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~--~~------------~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a 277 (326)
-..+++.....+|++++|+..|+++.... +. .+......+. ..+..+..+...|+..|++++|
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhhHHHHHHHHHHCCCHHHH
Confidence 34578888899999999999999885432 11 1111111111 1233345577889999999999
Q ss_pred HHHHHHHHH
Q 020453 278 VDGFQEAIK 286 (326)
Q Consensus 278 ~~~~~~~~~ 286 (326)
+.++++++.
T Consensus 227 i~lLe~aL~ 235 (449)
T 1b89_A 227 ITMLEAALG 235 (449)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 999988853
No 316
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=41.57 E-value=8.5 Score=28.83 Aligned_cols=32 Identities=25% Similarity=0.609 Sum_probs=22.8
Q ss_pred cCCcccccccccc-cCC---CeecccCCcchHHhHh
Q 020453 21 IGPLSCMICQALL-FEC---SKCTPCSHVYCKACIS 52 (326)
Q Consensus 21 ~~~l~C~iC~~~l-~~~---p~~l~C~h~fC~~Cl~ 52 (326)
...-.|.+|...| |.. -+...|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 3567899999985 222 3556788888888875
No 317
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=41.46 E-value=12 Score=28.72 Aligned_cols=41 Identities=20% Similarity=0.063 Sum_probs=20.5
Q ss_pred HHHHHHHHHh-hcC-C-CchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453 282 QEAIKRLESL-TLK-P-EEAGLEQRCWNSSTTNFQKNHLNQLPKFR 324 (326)
Q Consensus 282 ~~~~~~~~~l-~~~-p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (326)
++++.+++.+ ..+ | ...+.+.++ +..+..++++.++..+|+
T Consensus 52 ~~gI~lLe~ll~~~~p~~~rd~lY~L--Av~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 52 RKGIVLLEELLPKGSKEEQRDYVFYL--AVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHH--HHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccchHHHHHHH--HHHHHHccCHHHHHHHHH
Confidence 3444444444 223 3 234455555 555566666666655543
No 318
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=40.65 E-value=12 Score=27.26 Aligned_cols=44 Identities=20% Similarity=0.446 Sum_probs=34.1
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC--CCCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK--DCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~--~CP~Cr~~~~ 65 (326)
+-|.|..|...|...+....=|..||..|..+.. .|+.|.+.+.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCC
Confidence 4588999999865445666678889999998754 4999998776
No 319
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=40.35 E-value=7.5 Score=24.57 Aligned_cols=14 Identities=21% Similarity=0.968 Sum_probs=10.0
Q ss_pred cCCcchHHhHhcCC
Q 020453 42 CSHVYCKACISRFK 55 (326)
Q Consensus 42 C~h~fC~~Cl~~~~ 55 (326)
|++.||..|...|.
T Consensus 32 C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 32 CKAEFCWVCLGPWE 45 (60)
T ss_dssp GGSCCSSSSCSCSG
T ss_pred cCCEEeeCcCCCcc
Confidence 77777777776653
No 320
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=39.28 E-value=2.6e+02 Score=26.65 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSL 237 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl 237 (326)
..+++++.....++++.|...|.++-
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 45788888889999999999999853
No 321
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=37.62 E-value=6 Score=27.64 Aligned_cols=11 Identities=27% Similarity=1.029 Sum_probs=9.4
Q ss_pred cchHHhHhcCC
Q 020453 45 VYCKACISRFK 55 (326)
Q Consensus 45 ~fC~~Cl~~~~ 55 (326)
.||+.||.+|.
T Consensus 42 GFCRNCLskWy 52 (105)
T 2o35_A 42 GFCRNCLSNWY 52 (105)
T ss_dssp SCCHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 49999999885
No 322
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=37.57 E-value=6.1 Score=27.58 Aligned_cols=11 Identities=18% Similarity=1.081 Sum_probs=9.3
Q ss_pred cchHHhHhcCC
Q 020453 45 VYCKACISRFK 55 (326)
Q Consensus 45 ~fC~~Cl~~~~ 55 (326)
.||+.||++|.
T Consensus 41 GFCRNCLskWy 51 (104)
T 3fyb_A 41 DFCRNCLAKWL 51 (104)
T ss_dssp SCCHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 49999999884
No 323
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=36.94 E-value=11 Score=28.05 Aligned_cols=38 Identities=29% Similarity=0.635 Sum_probs=25.1
Q ss_pred cccccccccccCCCeecccCCcchHHhHhc---------------CCCCCCCCc
Q 020453 24 LSCMICQALLFECSKCTPCSHVYCKACISR---------------FKDCPLCGA 62 (326)
Q Consensus 24 l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~---------------~~~CP~Cr~ 62 (326)
-.|.+|.+- -+-.-.-.|-..||..||.+ .|.|+.|+-
T Consensus 58 ~~C~vC~dG-G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 58 EQCRWCAEG-GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SSCTTTCCC-SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CcCeecCCC-CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 347777654 22122336888999999973 277999964
No 324
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.24 E-value=2.3e+02 Score=25.03 Aligned_cols=49 Identities=4% Similarity=-0.077 Sum_probs=28.8
Q ss_pred hCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 020453 197 KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 245 (326)
Q Consensus 197 ~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~ 245 (326)
.+.....++...+....+.+.....+..+.+.....|...|+.+....+
T Consensus 78 ~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk 126 (390)
T 1deq_A 78 NYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILR 126 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666666666666666777776666666654443333
No 325
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.73 E-value=79 Score=20.77 Aligned_cols=30 Identities=17% Similarity=0.403 Sum_probs=19.7
Q ss_pred ccCCcccccccccccCCCeecccCCcchHH
Q 020453 20 KIGPLSCMICQALLFECSKCTPCSHVYCKA 49 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~ 49 (326)
......|..|...+--.++.=.|+.+||..
T Consensus 22 k~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp TCCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred cccCccchhhcCcccccceEeccCCEeccc
Confidence 334568999986422224555799999874
No 326
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.08 E-value=1.2e+02 Score=27.46 Aligned_cols=71 Identities=8% Similarity=0.042 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (326)
+.....++.++...|++.+|......... +..+... ..+.+..+-....++...+++.+|..+++++....
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~---Et~~~~~-----~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~ 207 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQV---ETYGSME-----MSEKIQFILEQMELSILKGDYSQATVLSRKILKKT 207 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCSSSC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH---HHHhccc-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 44566789999999999999887766542 2322221 22344455556677888899999998888775443
No 327
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=32.78 E-value=2e+02 Score=24.50 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYG-----GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS-IGNEDVAVDGFQEAI 285 (326)
Q Consensus 212 ~~~~l~~l~~~~-----~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~-~~~~~~a~~~~~~~~ 285 (326)
....++.++... |+.++|...|++++++. +.. -+......|..+.. +|+++.|..++++++
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-------P~~------~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-------SAH------DPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-------CTT------CSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-------CCC------CchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 556788898886 89999999999998873 221 01223334555544 589999998888876
Q ss_pred H
Q 020453 286 K 286 (326)
Q Consensus 286 ~ 286 (326)
.
T Consensus 268 ~ 268 (301)
T 3u64_A 268 A 268 (301)
T ss_dssp H
T ss_pred c
Confidence 5
No 328
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.17 E-value=1e+02 Score=28.11 Aligned_cols=13 Identities=0% Similarity=-0.084 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 020453 163 QLGAVLGMLGDCC 175 (326)
Q Consensus 163 ~H~~~l~~~C~~~ 175 (326)
.|...+.+.+.|.
T Consensus 337 ~HrNLV~L~gyC~ 349 (487)
T 3oja_A 337 RQREIDALKEQYR 349 (487)
T ss_dssp HHHHHHHHHHHTC
T ss_pred cccchhhHHHHhc
Confidence 4555555555443
No 329
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=30.21 E-value=19 Score=23.08 Aligned_cols=31 Identities=29% Similarity=0.753 Sum_probs=24.2
Q ss_pred CCcccccccccccCCCeeccc-CCcchHHhHhcC
Q 020453 22 GPLSCMICQALLFECSKCTPC-SHVYCKACISRF 54 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C-~h~fC~~Cl~~~ 54 (326)
+..-|-||.+. -+ -+.+.| +--||..|..+.
T Consensus 7 e~pWC~ICneD-At-lrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED-AT-LRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC-CC-EEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC-Ce-EEecCCCCceehHHHHHHH
Confidence 44569999998 45 788889 778999998654
No 330
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=29.08 E-value=16 Score=21.68 Aligned_cols=27 Identities=26% Similarity=0.728 Sum_probs=15.5
Q ss_pred ecccCCcchHHhHhcC--CCCCCCCcccc
Q 020453 39 CTPCSHVYCKACISRF--KDCPLCGADIE 65 (326)
Q Consensus 39 ~l~C~h~fC~~Cl~~~--~~CP~Cr~~~~ 65 (326)
.+.||++|=..=++.. ..||.|...+-
T Consensus 6 C~rCg~~fs~~el~~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 6 CGKCWKTFTDEQLKVLPGVRCPYCGYKII 34 (48)
T ss_dssp CCCTTTTCCCCCSCCCSSSCCTTTCCSCE
T ss_pred eeccCCCccHHHHhhCCCcccCccCcEEE
Confidence 4556666655444333 24999986653
No 331
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.91 E-value=36 Score=21.65 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=22.0
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK 55 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~ 55 (326)
+=|.|..|...|...+....=+..||..|..+.+
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 67 (72)
T 1x4l_A 34 DCFNCKKCSLSLVGRGFLTERDDILCPDCGKDIS 67 (72)
T ss_dssp TTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCC
T ss_pred ccCEeccCCCcCCCCccEeECCEEEChhHcCccc
Confidence 3477777877654445555566777888776554
No 332
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=28.76 E-value=73 Score=26.23 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 227 QAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 227 ~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
+.+...|+++.++.+.. -.+.++ ..+.-.||---..|+.+++.++|...-+++.
T Consensus 150 e~a~~aY~~A~~iA~~~--L~pthP---irLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKE--MPPTNP---IRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHH--SCTTCH---HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--CCCCCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46667788887776542 223332 2244446655578999999999987665553
No 333
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.49 E-value=81 Score=20.69 Aligned_cols=52 Identities=17% Similarity=0.351 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCCCCCcccCCcccccccccccCCCeecccCCcchHHhHhcCCCCCCCCcccc
Q 020453 4 ASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIE 65 (326)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~CP~Cr~~~~ 65 (326)
++.||+-|..+. ..-.|+.|...++..-.+..-+..|=..|+ .|-.|+..+.
T Consensus 2 ~~~~~~~~~~~~------~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF----~C~~C~~~L~ 53 (82)
T 2co8_A 2 SSGSSGQHQEAG------AGDLCALCGEHLYVLERLCVNGHFFHRSCF----RCHTCEATLW 53 (82)
T ss_dssp CCCCCCCCCCCC------SSCBCSSSCCBCCTTTBCCBTTBCCBTTTC----BCSSSCCBCC
T ss_pred CCCCCCCCcCCC------CCCCCcccCCCcccceEEEECCCeeCCCcC----EEcCCCCCcC
Confidence 444555554433 235799998875432233332322223333 3777776654
No 334
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.27 E-value=31 Score=21.80 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=19.9
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCC
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK 55 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~ 55 (326)
+-|.|..|...|...+....=+..||..|..+.+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 3466777777654334444445667777765543
No 335
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=28.25 E-value=14 Score=23.11 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCCcccCCccccccccc
Q 020453 7 PPKCPFGYDAQSFKIGPLSCMICQAL 32 (326)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~C~iC~~~ 32 (326)
.-+||.|..-+.+...=..|.+|...
T Consensus 2 ~~pCprGssws~dLdkCM~Cs~C~~~ 27 (66)
T 2kn0_A 2 QGECPEGRAYSQDLGKCMECSVCKNS 27 (66)
T ss_dssp CCCCCSSEEEETTTTEEEESTTCSSC
T ss_pred cccCCCCcccchhHHhhcccCcCCCC
Confidence 45799887666655455667777554
No 336
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=28.20 E-value=32 Score=23.29 Aligned_cols=30 Identities=23% Similarity=0.721 Sum_probs=17.0
Q ss_pred CCcccccccccccCCCeecc---cCCcchHHhHhc
Q 020453 22 GPLSCMICQALLFECSKCTP---CSHVYCKACISR 53 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~---C~h~fC~~Cl~~ 53 (326)
.+-.|+||... +.-..+| |+..|=..|+.+
T Consensus 14 ~D~~C~VC~~~--t~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 14 NDEMCDVCEVW--TAESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CSCCCTTTCCC--CSSCCSSCSSSSSCCCHHHHHH
T ss_pred CCcccCccccc--cccceeccccccccccHhhccc
Confidence 45679999854 2233343 444554666655
No 337
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.75 E-value=22 Score=27.21 Aligned_cols=42 Identities=24% Similarity=0.534 Sum_probs=27.0
Q ss_pred CCcccccccccc--c--CCCeecccCCcchHHhHh-----cCCCCCCCCcc
Q 020453 22 GPLSCMICQALL--F--ECSKCTPCSHVYCKACIS-----RFKDCPLCGAD 63 (326)
Q Consensus 22 ~~l~C~iC~~~l--~--~~p~~l~C~h~fC~~Cl~-----~~~~CP~Cr~~ 63 (326)
.+-.|.+|...| . ..-+...|.|.+|..|-. ..|.|-.|++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 567899999863 1 123456789999988873 22446555543
No 338
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=27.36 E-value=1.1e+02 Score=20.61 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=20.0
Q ss_pred cCCcccccccccccC-CCeecccCCcchHH
Q 020453 21 IGPLSCMICQALLFE-CSKCTPCSHVYCKA 49 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~-~p~~l~C~h~fC~~ 49 (326)
.....|..|...+-- .|+.=.||..||..
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred ccCccchhhCCeecccCCeEcCCCCEeccc
Confidence 345689999974222 26666799999874
No 339
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.94 E-value=33 Score=23.11 Aligned_cols=38 Identities=11% Similarity=0.335 Sum_probs=21.8
Q ss_pred CcccccccccccCCCeecccCCcchHHhHhcCCCCCCCCcccc
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIE 65 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~CP~Cr~~~~ 65 (326)
.-.|+.|...+ ...++..-+..|=..|+. |-.|+..+.
T Consensus 25 ~~~C~~C~~~I-~~~~v~a~~~~~H~~CF~----C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVI-RGPFLVALGKSWHPEEFN----CAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBC-CSCEEEETTEEECTTTCB----CSSSCCBCS
T ss_pred CCCCccCCCEe-cceEEEECCccccccCCc----cCCCCCCCC
Confidence 45688888874 335554444444344442 667776665
No 340
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.74 E-value=27 Score=25.66 Aligned_cols=32 Identities=25% Similarity=0.799 Sum_probs=22.4
Q ss_pred CCcccccccccccC----CCeecccCCcchHHhHhcC
Q 020453 22 GPLSCMICQALLFE----CSKCTPCSHVYCKACISRF 54 (326)
Q Consensus 22 ~~l~C~iC~~~l~~----~p~~l~C~h~fC~~Cl~~~ 54 (326)
+.-.|.+|... |+ .--...||+.||..|....
T Consensus 68 ~~~~C~~C~~~-Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKG-FSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCB-CCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCc-cccccccccCCCCCeEEChHHhCCc
Confidence 34579999887 44 1334579999999987543
No 341
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.64 E-value=42 Score=22.53 Aligned_cols=31 Identities=29% Similarity=0.719 Sum_probs=21.7
Q ss_pred CCcccccccccccC----CCeecccCCcchHHhHhc
Q 020453 22 GPLSCMICQALLFE----CSKCTPCSHVYCKACISR 53 (326)
Q Consensus 22 ~~l~C~iC~~~l~~----~p~~l~C~h~fC~~Cl~~ 53 (326)
+...|.+|... |. .--...||..||..|...
T Consensus 13 ~~~~C~~C~~~-F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSAT-FSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCC-CCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCc-cccchhhhhhcCCCcEEChhhcCC
Confidence 44579999886 34 233457999999988653
No 342
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=26.44 E-value=1.9e+02 Score=21.09 Aligned_cols=46 Identities=7% Similarity=0.016 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453 235 RSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285 (326)
Q Consensus 235 ~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~ 285 (326)
+.+.+.++++.... . ..-...+-.||..+..+|+|.+|+.+.+..+
T Consensus 56 ~GI~lLe~l~~~~~--p---~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 56 KGIVLLEELLPKGS--K---EEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHHHHHHHTTTSC--H---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--c---chHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45556666555431 1 0234456678889999999988887766444
No 343
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.29 E-value=29 Score=22.51 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=22.4
Q ss_pred CcccccccccccCCCeecccCCcchHHhHhcCCC
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKD 56 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~ 56 (326)
=|.|..|...|...+....=+..||..|..+.+.
T Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 68 (76)
T 1x68_A 35 CFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDT 68 (76)
T ss_dssp GCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCC
T ss_pred cCChhhCCCcCCCCceEeECCEEECHHHhhhhhC
Confidence 4778888777544455555666778877766543
No 344
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.05 E-value=58 Score=18.73 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 020453 205 IIHTLSVSLNKIGDLKYYG 223 (326)
Q Consensus 205 ~~~~i~~~~~~l~~l~~~~ 223 (326)
+...|+..+++|.+++..+
T Consensus 14 VdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 14 VDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555566666555333
No 345
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.93 E-value=85 Score=21.13 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453 212 SLNKIGDLKYYGGDLQAARSYYVRSLN 238 (326)
Q Consensus 212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~ 238 (326)
..-.+|.+....|+|++|+..+++.++
T Consensus 45 A~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 45 ALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345678899999999999999998754
No 346
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=25.04 E-value=10 Score=19.89 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=6.7
Q ss_pred Ccccccccccc
Q 020453 23 PLSCMICQALL 33 (326)
Q Consensus 23 ~l~C~iC~~~l 33 (326)
.+.||+|...+
T Consensus 3 k~~CpvCk~q~ 13 (28)
T 2jvx_A 3 DFCCPKCQYQA 13 (28)
T ss_dssp CEECTTSSCEE
T ss_pred cccCccccccC
Confidence 35677776653
No 347
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=24.59 E-value=2.1e+02 Score=26.33 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 020453 226 LQAARSYYVRSLNVRRDAVK 245 (326)
Q Consensus 226 ~~~a~~~~~~sl~~~~~~~~ 245 (326)
.++|+..|+++++..+++..
T Consensus 448 A~kAi~~Y~~Ai~~L~k~~~ 467 (526)
T 2wb7_A 448 AQGAIDEYKAAINDLQKAAQ 467 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 35788888888887776553
No 348
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=24.47 E-value=27 Score=25.53 Aligned_cols=32 Identities=31% Similarity=0.704 Sum_probs=22.4
Q ss_pred CCcccccccccccC----CCeecccCCcchHHhHhcC
Q 020453 22 GPLSCMICQALLFE----CSKCTPCSHVYCKACISRF 54 (326)
Q Consensus 22 ~~l~C~iC~~~l~~----~p~~l~C~h~fC~~Cl~~~ 54 (326)
+...|..|... |+ ..-...||..||..|....
T Consensus 18 ~~~~C~~C~~~-Fs~~~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 18 LEPSCKSCGAH-FANTARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp --CCCTTTCCC-CSSGGGCEECTTTCCEECGGGEEC-
T ss_pred ccCcccCcCCc-cccccccccCCCCCCeeCHHHhCCC
Confidence 44679999886 44 2345679999999998765
No 349
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.28 E-value=1.5e+02 Score=27.39 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHh
Q 020453 277 AVDGFQEAIKRLESL 291 (326)
Q Consensus 277 a~~~~~~~~~~~~~l 291 (326)
.++.|+...+.|+++
T Consensus 174 d~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 174 DLKDYEDQQKQLEQV 188 (562)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 356667676777776
No 350
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.27 E-value=35 Score=31.48 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=6.1
Q ss_pred chhhhHHHHhHHh
Q 020453 306 NSSTTNFQKNHLN 318 (326)
Q Consensus 306 ~~~~~~~~~~~~~ 318 (326)
+...|..+..++.
T Consensus 174 d~~sY~~~QKQLe 186 (562)
T 3ghg_A 174 DLKDYEDQQKQLE 186 (562)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 4444555554443
No 351
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=23.84 E-value=1.2e+02 Score=25.91 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453 214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284 (326)
Q Consensus 214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~ 284 (326)
--++.+....|++++|+..+.+.+. ..+. .+-...+..++.++..+|+.+.|.+.+++.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~-------~~~~-----~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGID-------NDEA-----EGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHT-------SSCS-----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc-------cCCC-----cCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3677788888999999988877632 1110 012233344556666667766666655443
No 352
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=23.62 E-value=30 Score=23.65 Aligned_cols=32 Identities=34% Similarity=0.877 Sum_probs=22.5
Q ss_pred CCcccccccccccC----CCeecccCCcchHHhHhcC
Q 020453 22 GPLSCMICQALLFE----CSKCTPCSHVYCKACISRF 54 (326)
Q Consensus 22 ~~l~C~iC~~~l~~----~p~~l~C~h~fC~~Cl~~~ 54 (326)
+...|.+|... |. .--...||..||..|....
T Consensus 19 ~~~~C~~C~~~-F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVK-FTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCB-CCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCc-ccchhhCccccCCCCEECCcccCCe
Confidence 44579999886 33 2334579999999988644
No 353
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=23.37 E-value=34 Score=26.84 Aligned_cols=40 Identities=25% Similarity=0.433 Sum_probs=22.0
Q ss_pred cccccccccccCCCeecccCCcchHHhHhc--------CCCCCCCCccc
Q 020453 24 LSCMICQALLFECSKCTPCSHVYCKACISR--------FKDCPLCGADI 64 (326)
Q Consensus 24 l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~--------~~~CP~Cr~~~ 64 (326)
-.|.+|..- -.--..-.|...|-..|+.+ -|.||.|+...
T Consensus 5 ~~C~~C~~~-g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 5 DWCAVCQNG-GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SSCTTTCCC-SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CccccCCCC-CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 347777654 22112223555565666633 26799998654
No 354
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=23.24 E-value=2.4e+02 Score=21.14 Aligned_cols=51 Identities=10% Similarity=0.006 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCc
Q 020453 235 RSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE 297 (326)
Q Consensus 235 ~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~ 297 (326)
+.+.+.+++....+. .....+-.||..+..+|+|..|+.+.+..+ ...|++
T Consensus 60 ~GI~LLe~l~~~~~~------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL------~~eP~n 110 (144)
T 1y8m_A 60 LGVKILTDIYKEAES------RRRECLYYLTIGCYKLGEYSMAKRYVDTLF------EHERNN 110 (144)
T ss_dssp HHHHHHHHHHHHCCS------THHHHHHHHHHHHHTTTCHHHHHHHHHHHH------HTCCCC
T ss_pred HHHHHHHHHHhcCcc------chhHHHHHHHHHHHHhhhHHHHHHHHHHHH------hcCCCc
Confidence 455555555554443 234556778889999999888887655333 345665
No 355
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=23.01 E-value=2.7e+02 Score=23.75 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHH
Q 020453 258 AVSLAKVADVDRSI-----GNEDVAVDGFQEAIKRL 288 (326)
Q Consensus 258 a~~l~~l~~~~~~~-----~~~~~a~~~~~~~~~~~ 288 (326)
......+|.+|..+ |+.++|.++|++++.+-
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln 234 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC 234 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC
Confidence 44566688888886 99999999999999875
No 356
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.99 E-value=34 Score=21.71 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=16.9
Q ss_pred CcccccccccccCCCeecccCCcchHHhHhcC
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACISRF 54 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~ 54 (326)
=|.|..|...|...+....=+..||..|..+.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 33 CFLCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64 (72)
T ss_dssp TCBCTTTCCBTTTSCEEEETTEEEEHHHHHHH
T ss_pred cCeECCCCCcCCCCccCCcCCeEECHHHHHHH
Confidence 35666666654333444444555666666543
No 357
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=22.94 E-value=33 Score=22.38 Aligned_cols=27 Identities=37% Similarity=0.958 Sum_probs=19.7
Q ss_pred ccccccccccC----CCeecccCCcchHHhHh
Q 020453 25 SCMICQALLFE----CSKCTPCSHVYCKACIS 52 (326)
Q Consensus 25 ~C~iC~~~l~~----~p~~l~C~h~fC~~Cl~ 52 (326)
.|.+|... |+ .--...||..||..|..
T Consensus 13 ~C~~C~~~-F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 13 ACMICSKK-FSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp BCTTTCCB-CBTTBCCEECTTTCCEECGGGSC
T ss_pred cccCCCCc-cCCccccccCCCCCEEEcccccC
Confidence 79999886 34 23345699999998874
No 358
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.65 E-value=34 Score=21.68 Aligned_cols=29 Identities=21% Similarity=0.608 Sum_probs=13.3
Q ss_pred cccccccccccCCCeecccCCcchHHhHh
Q 020453 24 LSCMICQALLFECSKCTPCSHVYCKACIS 52 (326)
Q Consensus 24 l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~ 52 (326)
|.|..|...|........=+..||..|..
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~ 60 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHN 60 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhh
Confidence 45555555443323333344455555543
No 359
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.32 E-value=37 Score=21.56 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=15.5
Q ss_pred cccccccccccCCCeecccCCcchHHhHhcC
Q 020453 24 LSCMICQALLFECSKCTPCSHVYCKACISRF 54 (326)
Q Consensus 24 l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~ 54 (326)
|.|..|...|...+....=+..||..|..+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPCYEKQ 64 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHHHHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHHHhHH
Confidence 5566666554333333333455566665443
No 360
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=22.28 E-value=2.3e+02 Score=20.94 Aligned_cols=51 Identities=10% Similarity=0.006 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCc
Q 020453 235 RSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE 297 (326)
Q Consensus 235 ~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~ 297 (326)
+.+.+.+++....+. .....+--||..+..+|+|..|+.+.+..+ ...|++
T Consensus 61 ~GI~LLe~l~~~~~~------~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL------~~eP~N 111 (134)
T 3o48_A 61 LGVKILTDIYKEAES------RRRECLYYLTIGCYKLGEYSMAKRYVDTLF------EHERNN 111 (134)
T ss_dssp HHHHHHHHHHHHCGG------GHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------TTCTTC
T ss_pred HHHHHHHHHHhcCcc------hhHHHHHHHHHHHHHhhhHHHHHHHHHHHH------hhCCCC
Confidence 444444555543332 234556667888889999888887654322 456666
No 361
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=22.22 E-value=66 Score=25.32 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=9.7
Q ss_pred CCCCCCCCccccc
Q 020453 54 FKDCPLCGADIEK 66 (326)
Q Consensus 54 ~~~CP~Cr~~~~~ 66 (326)
.+.||.|+.....
T Consensus 54 ~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 54 AYTCVNCTERHPA 66 (183)
T ss_dssp CCCCTTTCCSSSC
T ss_pred eeECcCCCCCCCH
Confidence 4679999987653
No 362
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=22.18 E-value=38 Score=22.76 Aligned_cols=31 Identities=26% Similarity=0.705 Sum_probs=22.3
Q ss_pred CCcccccccccccC----CCeecccCCcchHHhHhc
Q 020453 22 GPLSCMICQALLFE----CSKCTPCSHVYCKACISR 53 (326)
Q Consensus 22 ~~l~C~iC~~~l~~----~p~~l~C~h~fC~~Cl~~ 53 (326)
+...|.+|... |+ .--...||..||..|...
T Consensus 20 ~~~~C~~C~~~-Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCV-FTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCB-CCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCc-cccchhcccccCCCcEEChHHhCC
Confidence 45679999887 44 233457999999998754
No 363
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=21.62 E-value=27 Score=28.04 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=24.0
Q ss_pred CcccccccccccCCCeecccCCcchHHhHhcC--------CCCCCCCccc
Q 020453 23 PLSCMICQALLFECSKCTPCSHVYCKACISRF--------KDCPLCGADI 64 (326)
Q Consensus 23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~--------~~CP~Cr~~~ 64 (326)
.-.|.+|..- -.--..-.|...|-..|+.+. |.||.|+...
T Consensus 7 ~~~C~~C~~~-g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNG-GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCC-EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCC-CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3458888754 221122246666667777432 6799998654
No 364
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=21.54 E-value=46 Score=26.33 Aligned_cols=38 Identities=24% Similarity=0.549 Sum_probs=19.6
Q ss_pred ccccccccccCCCeecccCCcchHHhHhc--------CCCCCCCCcc
Q 020453 25 SCMICQALLFECSKCTPCSHVYCKACISR--------FKDCPLCGAD 63 (326)
Q Consensus 25 ~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~--------~~~CP~Cr~~ 63 (326)
.|.+|..- -.--..-.|...|-..|+.+ -|.||.|+..
T Consensus 4 ~C~~C~~~-g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 4 ICRVCQKP-GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CBTTTCCC-SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred cCccCCCC-CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 46666543 12112223444555556632 2669999865
No 365
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=21.53 E-value=1.9e+02 Score=19.28 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=23.4
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453 221 YYGGDLQAARSYYVRSLNVRRDAVKRHSN 249 (326)
Q Consensus 221 ~~~~~~~~a~~~~~~sl~~~~~~~~~~~~ 249 (326)
...|+|++|+..|.++++........++.
T Consensus 30 D~~g~y~eAl~lY~~aie~l~~alk~e~d 58 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIEVLAQLVSLYRD 58 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 66799999999999999987776655443
No 366
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=21.22 E-value=49 Score=20.60 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=18.3
Q ss_pred CCcccccccccccCCCeecccCCcch-HHhHhc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYC-KACISR 53 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC-~~Cl~~ 53 (326)
+=|.|..|...|...+....=|..|| ..|...
T Consensus 31 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k 63 (65)
T 2iyb_E 31 ECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 63 (65)
T ss_dssp TTSBCTTTCCBCTTSCCEEETTEEESSHHHHHT
T ss_pred CCEECCCCCCcCCCCceEEECCEEecCHHHhhh
Confidence 44667777766544344444466667 666543
No 367
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=20.92 E-value=36 Score=22.07 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=20.0
Q ss_pred cCCcccccccccccCCCeecccCCcchHHhHhcCCCCCCCCcccc
Q 020453 21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIE 65 (326)
Q Consensus 21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~CP~Cr~~~~ 65 (326)
.+.|.||+|...|.-... .....||.|+..++
T Consensus 6 LeiL~CP~ck~~L~~~~~-------------~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 6 LDILACPICKGPLKLSAD-------------KTELISKGAGLAYP 37 (69)
T ss_dssp GGTCCCTTTCCCCEECTT-------------SSEEEETTTTEEEE
T ss_pred HhheeCCCCCCcCeEeCC-------------CCEEEcCCCCcEec
Confidence 467899999986532210 12234888877766
No 368
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.88 E-value=1.8e+02 Score=19.21 Aligned_cols=39 Identities=13% Similarity=0.310 Sum_probs=23.6
Q ss_pred CCcccccccccccCCCeecccCCcchHHhHhcCCCCCCCCcccc
Q 020453 22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIE 65 (326)
Q Consensus 22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~CP~Cr~~~~ 65 (326)
..-.|..|...+.. .++..-+..|=..|+ .|-.|+..+.
T Consensus 24 ~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF----~C~~C~~~L~ 62 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVKARDKYRHPECF----VCADCNLNLK 62 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEESSSCEECTTTC----CCSSSCCCTT
T ss_pred cCCCcccCCCEecc-cEEEECCceECccCC----EecCCCCCCC
Confidence 45689999997544 444444443334443 3778877655
No 369
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.84 E-value=34 Score=22.14 Aligned_cols=33 Identities=9% Similarity=-0.109 Sum_probs=20.3
Q ss_pred ccCCcccccccccccCCCeecccCCcchHHhHhcCCCCCCCCcccc
Q 020453 20 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIE 65 (326)
Q Consensus 20 ~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~CP~Cr~~~~ 65 (326)
..+.|.||+|...|.-.. .. ....||.|+..++
T Consensus 5 LL~iL~CP~ck~~L~~~~---~~----------~~LiC~~cg~~YP 37 (68)
T 2jr6_A 5 FLDILVCPVTKGRLEYHQ---DK----------QELWSRQAKLAYP 37 (68)
T ss_dssp SSCCCBCSSSCCBCEEET---TT----------TEEEETTTTEEEE
T ss_pred HhhheECCCCCCcCeEeC---CC----------CEEEcCCCCcEec
Confidence 347889999998653211 11 2233787877766
No 370
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=20.73 E-value=41 Score=22.49 Aligned_cols=32 Identities=28% Similarity=0.816 Sum_probs=22.4
Q ss_pred CCcccccccccccC----CCeecccCCcchHHhHhcC
Q 020453 22 GPLSCMICQALLFE----CSKCTPCSHVYCKACISRF 54 (326)
Q Consensus 22 ~~l~C~iC~~~l~~----~p~~l~C~h~fC~~Cl~~~ 54 (326)
+...|.+|... |+ .--...||..||..|....
T Consensus 18 ~~~~C~~C~~~-Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKE-FSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCB-CBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCc-ccCccccccCCCCCCEEChHHhCCe
Confidence 34579999887 44 1234579999999998643
No 371
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.47 E-value=2.4e+02 Score=20.27 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=17.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHh
Q 020453 271 IGNEDVAVDGFQEAIKRLESL 291 (326)
Q Consensus 271 ~~~~~~a~~~~~~~~~~~~~l 291 (326)
.|+.+.|+++|++.+.-+++=
T Consensus 35 ~g~k~~Al~lYk~GI~eLe~G 55 (116)
T 2dl1_A 35 LGQKEEAKNYYKQGIGHLLRG 55 (116)
T ss_dssp HTCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHh
Confidence 488999999999998888664
Done!