BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020454
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 16/97 (16%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
F++G+ D VRL+D R V ++ E I +V PD G+ G D+RT
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 290 GKLLGCFIGKCSGSIRSIARHP-----TLPIIASCGF 321
G L + R P LPI+ S F
Sbjct: 281 GHQLQVY-----------NREPDRNDNELPIVTSVAF 306
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 170 VDISEKFSLFGGKGVEVNV--WDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDD 226
VDIS + ++ ++ WDL+ ++I + P ++ + F+P D
Sbjct: 86 VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP------------D 133
Query: 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286
+ GT+ +V ++ + ++ S D R I ++A PD + G G + D
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 192
Query: 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319
I TGKLL G IRS+ P ++ +
Sbjct: 193 IATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTA 224
>pdb|1G03|A Chain A, Nmr Structure Of N-Terminal Domain Of Htlv-I Ca1-134
Length = 134
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG 98
L AS+ Q D L++ A G+T NPL G LRV +N G
Sbjct: 66 LVASLHHQQLDSLISEAETRGITSY-NPLAGPLRVQANNPQQQG 108
>pdb|1QRJ|B Chain B, Solution Structure Of Htlv-I Capsid Protein
Length = 199
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE 102
L AS+ Q D L++ A G+T NPL G LRV +N G + E
Sbjct: 51 LVASLHHQQLDSLISEAETRGITGY-NPLAGPLRVQANNPQQQGLRRE 97
>pdb|3KL9|A Chain A, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|B Chain B, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|C Chain C, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|D Chain D, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|E Chain E, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|F Chain F, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|G Chain G, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|H Chain H, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|I Chain I, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|J Chain J, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|K Chain K, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|L Chain L, Crystal Structure Of Pepa From Streptococcus Pneumoniae
Length = 355
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFI 297
+R YD P M DF T AEE + Y G G D + ++ G + I
Sbjct: 257 IRFYDPGHLLLPGMK-DFLLT----TAEEAGIKYQYYCGKGGTDAGAAHLKNGGVPSTTI 311
Query: 298 GKCSGSIRSIARHPTLPIIASCGFLEAAS 326
G C+ R I H TL A FLEA +
Sbjct: 312 GVCA---RYIHSHQTL--YAMDDFLEAQA 335
>pdb|3RGA|A Chain A, Crystal Structure Of Epoxide Hydrolase For Polyether
Lasalocid A Biosynthesis
Length = 283
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 1 MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS 51
+P T T+ PG PP R +G+I+V GE G + ++ WG SS
Sbjct: 82 LPATVTVGAPGAPPQRRGRTRVMGVIEV----GEDGLIREMRVMWGVTDSS 128
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 18 LTFDSLGLIKVIEARGEHGGVPKVVERW--GDPHSSNCVLAASIDDSQNDPLLAVARKNG 75
L F ++G +V G ++++ + D + A + D + + PLLAVA G
Sbjct: 72 LVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 131
Query: 76 LTDILNPL 83
+ I+NP+
Sbjct: 132 IIRIINPI 139
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 18 LTFDSLGLIKVI----EARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK 73
L F ++G +V ++GE + V+ D + C A + D + + PLLAVA
Sbjct: 35 LVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTC--AWTYDSNTSHPLLAVAGS 92
Query: 74 NGLTDILNPL 83
G+ I+NP+
Sbjct: 93 RGIIRIINPI 102
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 18 LTFDSLGLIKVI----EARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK 73
L F ++G +V ++GE + V+ D + C A + D + + PLLAVA
Sbjct: 36 LVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTC--AWTYDSNTSHPLLAVAGS 93
Query: 74 NGLTDILNPL 83
G+ I+NP+
Sbjct: 94 RGIIRIINPI 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,406,765
Number of Sequences: 62578
Number of extensions: 367654
Number of successful extensions: 811
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 14
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)