Query 020454
Match_columns 326
No_of_seqs 457 out of 2195
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 02:30:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.4E-41 5.1E-46 264.5 23.0 279 15-325 128-475 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 9.1E-42 2E-46 269.7 20.5 266 15-325 188-454 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 6.7E-38 1.5E-42 247.9 18.1 234 54-325 178-412 (459)
4 KOG0271 Notchless-like WD40 re 100.0 2.6E-37 5.7E-42 241.9 21.1 249 48-325 112-433 (480)
5 KOG0286 G-protein beta subunit 100.0 1.8E-35 4E-40 223.9 28.7 266 15-325 68-339 (343)
6 KOG0315 G-protein beta subunit 100.0 6.8E-35 1.5E-39 216.1 27.5 269 13-326 9-283 (311)
7 KOG0284 Polyadenylation factor 100.0 4.1E-36 8.9E-41 236.9 15.7 264 15-325 109-374 (464)
8 KOG0273 Beta-transducin family 100.0 5.4E-34 1.2E-38 228.7 27.9 264 14-325 247-517 (524)
9 KOG0295 WD40 repeat-containing 100.0 2.4E-34 5.3E-39 223.8 23.3 267 15-325 121-400 (406)
10 KOG0263 Transcription initiati 100.0 3.2E-35 7E-40 249.5 19.8 195 101-325 449-643 (707)
11 KOG0279 G protein beta subunit 100.0 1.3E-32 2.9E-37 207.1 27.2 269 15-325 29-307 (315)
12 KOG0265 U5 snRNP-specific prot 100.0 7.3E-33 1.6E-37 210.5 24.8 266 15-325 60-332 (338)
13 KOG0279 G protein beta subunit 100.0 2.6E-32 5.6E-37 205.6 26.7 235 49-320 13-252 (315)
14 KOG0318 WD40 repeat stress pro 100.0 2.6E-31 5.7E-36 216.2 32.1 289 13-325 159-554 (603)
15 KOG0284 Polyadenylation factor 100.0 1.3E-34 2.9E-39 228.3 12.4 229 59-325 102-331 (464)
16 KOG0319 WD40-repeat-containing 100.0 3E-32 6.5E-37 229.7 26.5 273 15-325 294-613 (775)
17 KOG0315 G-protein beta subunit 100.0 7E-32 1.5E-36 200.2 25.1 259 13-309 50-308 (311)
18 KOG0319 WD40-repeat-containing 100.0 4E-32 8.7E-37 228.9 25.5 291 6-324 110-570 (775)
19 KOG0276 Vesicle coat complex C 100.0 8.3E-32 1.8E-36 223.3 24.1 278 3-324 12-292 (794)
20 KOG0273 Beta-transducin family 100.0 2.1E-31 4.7E-36 213.9 24.6 267 17-325 194-476 (524)
21 KOG0313 Microtubule binding pr 100.0 4.4E-31 9.5E-36 206.8 25.1 277 14-325 115-412 (423)
22 KOG0286 G-protein beta subunit 100.0 1.3E-30 2.7E-35 197.8 26.8 234 58-324 60-296 (343)
23 KOG0285 Pleiotropic regulator 100.0 7.2E-32 1.6E-36 209.8 19.6 225 60-324 158-382 (460)
24 KOG0291 WD40-repeat-containing 100.0 2.4E-30 5.1E-35 218.9 30.2 260 20-324 326-605 (893)
25 cd00200 WD40 WD40 domain, foun 100.0 8.2E-30 1.8E-34 209.0 32.9 264 15-325 22-285 (289)
26 KOG0291 WD40-repeat-containing 100.0 5.8E-30 1.3E-34 216.6 31.3 283 13-326 106-503 (893)
27 KOG0276 Vesicle coat complex C 100.0 1.9E-31 4.2E-36 221.1 21.7 230 60-326 20-252 (794)
28 KOG0296 Angio-associated migra 100.0 1.4E-30 2.9E-35 203.1 24.9 273 15-325 77-392 (399)
29 KOG0306 WD40-repeat-containing 100.0 1.8E-30 3.9E-35 219.5 26.0 271 16-326 386-659 (888)
30 KOG0281 Beta-TrCP (transducin 100.0 8.4E-33 1.8E-37 214.5 10.9 255 15-325 208-471 (499)
31 PLN00181 protein SPA1-RELATED; 100.0 2.5E-29 5.5E-34 232.6 35.6 269 15-325 496-787 (793)
32 KOG0263 Transcription initiati 100.0 1.1E-30 2.3E-35 222.1 22.4 230 50-319 450-703 (707)
33 KOG0295 WD40 repeat-containing 100.0 5.3E-31 1.1E-35 205.3 18.0 227 62-325 117-358 (406)
34 KOG0285 Pleiotropic regulator 100.0 4.7E-30 1E-34 199.8 23.1 263 15-325 164-433 (460)
35 KOG0318 WD40 repeat stress pro 100.0 1E-28 2.2E-33 201.2 30.0 285 15-325 203-596 (603)
36 KOG1407 WD40 repeat protein [F 100.0 4.4E-29 9.6E-34 186.6 24.7 266 12-324 30-295 (313)
37 KOG0266 WD40 repeat-containing 100.0 5.8E-29 1.3E-33 215.1 28.7 269 15-325 172-448 (456)
38 KOG0316 Conserved WD40 repeat- 100.0 3.4E-29 7.5E-34 184.6 21.1 256 16-320 31-289 (307)
39 KOG0305 Anaphase promoting com 100.0 8.6E-29 1.9E-33 206.6 26.0 264 16-326 189-456 (484)
40 KOG0282 mRNA splicing factor [ 100.0 4.9E-30 1.1E-34 206.7 17.1 267 15-325 228-499 (503)
41 KOG0266 WD40 repeat-containing 100.0 1.7E-28 3.7E-33 212.2 27.7 231 60-325 166-403 (456)
42 KOG0281 Beta-TrCP (transducin 100.0 2.3E-30 5E-35 201.0 12.3 223 51-325 197-422 (499)
43 PLN00181 protein SPA1-RELATED; 100.0 1E-27 2.2E-32 222.0 32.2 261 23-325 457-732 (793)
44 KOG0277 Peroxisomal targeting 100.0 8.9E-29 1.9E-33 184.3 20.1 264 22-325 36-303 (311)
45 KOG3881 Uncharacterized conser 100.0 1.1E-28 2.3E-33 194.3 21.2 254 54-326 58-315 (412)
46 KOG0316 Conserved WD40 repeat- 100.0 1.8E-28 3.9E-33 180.8 20.0 229 53-325 19-251 (307)
47 KOG0268 Sof1-like rRNA process 100.0 1.4E-29 3.1E-34 197.4 14.6 230 67-326 81-340 (433)
48 KOG0310 Conserved WD40 repeat- 100.0 1.4E-27 3.1E-32 192.9 24.8 265 12-326 38-304 (487)
49 KOG0643 Translation initiation 100.0 4.3E-28 9.2E-33 181.9 19.9 227 62-326 19-312 (327)
50 KOG0772 Uncharacterized conser 100.0 9.5E-28 2.1E-32 195.2 22.6 290 5-325 173-481 (641)
51 KOG0292 Vesicle coat complex C 100.0 1.4E-27 3.1E-32 205.6 24.5 273 15-324 22-315 (1202)
52 KOG0293 WD40 repeat-containing 100.0 5.8E-28 1.3E-32 191.4 20.0 267 15-326 237-508 (519)
53 KOG0308 Conserved WD40 repeat- 100.0 3E-28 6.6E-33 203.1 19.2 244 61-325 33-279 (735)
54 cd00200 WD40 WD40 domain, foun 100.0 2.8E-26 6.1E-31 188.0 30.8 234 52-325 10-243 (289)
55 KOG1446 Histone H3 (Lys4) meth 100.0 4.7E-26 1E-30 175.0 29.4 262 15-321 27-295 (311)
56 KOG0274 Cdc4 and related F-box 100.0 5.1E-27 1.1E-31 202.9 26.7 257 15-325 219-476 (537)
57 KOG0292 Vesicle coat complex C 100.0 7.9E-28 1.7E-32 207.1 20.0 234 53-326 11-275 (1202)
58 KOG0288 WD40 repeat protein Ti 100.0 3.6E-28 7.7E-33 192.5 16.5 263 15-325 188-455 (459)
59 KOG0645 WD40 repeat protein [G 100.0 7.1E-26 1.5E-30 170.3 26.6 266 16-325 29-305 (312)
60 KOG1407 WD40 repeat protein [F 100.0 8.3E-27 1.8E-31 174.5 21.1 229 60-325 27-255 (313)
61 KOG0277 Peroxisomal targeting 100.0 3.2E-27 6.9E-32 176.1 18.8 220 73-325 36-259 (311)
62 KOG0275 Conserved WD40 repeat- 100.0 1.4E-27 3E-32 184.2 17.3 268 15-324 226-502 (508)
63 KOG0278 Serine/threonine kinas 100.0 6.5E-28 1.4E-32 179.4 14.6 268 9-326 23-292 (334)
64 PTZ00421 coronin; Provisional 100.0 2.5E-25 5.4E-30 192.0 32.8 261 15-312 33-314 (493)
65 KOG0645 WD40 repeat protein [G 100.0 1.1E-25 2.5E-30 169.3 26.4 224 65-325 27-255 (312)
66 KOG0313 Microtubule binding pr 100.0 1.3E-26 2.8E-31 181.9 20.7 236 65-325 115-370 (423)
67 KOG0289 mRNA splicing factor [ 100.0 2.4E-26 5.1E-31 183.4 21.4 224 65-323 231-454 (506)
68 KOG0289 mRNA splicing factor [ 100.0 1.5E-25 3.3E-30 178.8 25.9 265 14-324 231-499 (506)
69 KOG0294 WD40 repeat-containing 100.0 1.8E-25 3.9E-30 171.6 24.2 267 15-325 2-275 (362)
70 KOG0265 U5 snRNP-specific prot 100.0 7.7E-26 1.7E-30 172.5 21.9 238 48-325 44-290 (338)
71 KOG1036 Mitotic spindle checkp 100.0 2.3E-25 5.1E-30 170.5 24.1 257 15-321 26-294 (323)
72 KOG0264 Nucleosome remodeling 100.0 4.3E-26 9.3E-31 182.8 20.9 241 64-324 136-397 (422)
73 KOG1446 Histone H3 (Lys4) meth 99.9 1.1E-24 2.3E-29 167.6 27.2 231 54-325 17-256 (311)
74 KOG1539 WD repeat protein [Gen 99.9 3.4E-25 7.5E-30 189.8 26.9 281 15-324 173-640 (910)
75 KOG0275 Conserved WD40 repeat- 99.9 1.6E-26 3.4E-31 178.4 16.6 235 61-324 221-460 (508)
76 KOG0306 WD40-repeat-containing 99.9 3.8E-25 8.2E-30 187.6 25.8 269 21-325 341-616 (888)
77 PTZ00420 coronin; Provisional 99.9 2.7E-24 5.8E-29 186.7 31.5 259 20-313 50-318 (568)
78 KOG0640 mRNA cleavage stimulat 99.9 9.5E-26 2.1E-30 173.0 19.8 279 13-326 123-421 (430)
79 KOG0283 WD40 repeat-containing 99.9 5.2E-25 1.1E-29 189.2 24.0 243 49-325 265-570 (712)
80 KOG0308 Conserved WD40 repeat- 99.9 8.9E-26 1.9E-30 188.5 18.8 277 14-323 36-319 (735)
81 KOG0310 Conserved WD40 repeat- 99.9 1.9E-25 4.1E-30 180.6 20.1 238 48-325 23-262 (487)
82 PTZ00420 coronin; Provisional 99.9 2.8E-24 6E-29 186.6 28.8 226 71-325 50-287 (568)
83 PTZ00421 coronin; Provisional 99.9 6.6E-24 1.4E-28 183.3 29.9 237 68-325 35-284 (493)
84 KOG0301 Phospholipase A2-activ 99.9 1.3E-24 2.8E-29 182.8 23.6 258 13-325 24-282 (745)
85 KOG0283 WD40 repeat-containing 99.9 9.3E-25 2E-29 187.6 22.7 204 53-289 371-577 (712)
86 KOG0647 mRNA export protein (c 99.9 7.4E-24 1.6E-28 161.9 24.4 264 15-322 41-315 (347)
87 KOG0299 U3 snoRNP-associated p 99.9 4.5E-24 9.8E-29 171.6 23.8 260 15-319 155-443 (479)
88 KOG0296 Angio-associated migra 99.9 3.4E-24 7.3E-29 167.6 22.3 234 50-326 63-351 (399)
89 KOG0282 mRNA splicing factor [ 99.9 2.8E-25 6.1E-30 179.5 16.7 229 15-286 271-503 (503)
90 KOG2106 Uncharacterized conser 99.9 3.9E-23 8.4E-28 168.2 28.2 265 18-322 216-512 (626)
91 KOG0973 Histone transcription 99.9 9.6E-24 2.1E-28 186.0 25.0 282 15-325 26-349 (942)
92 KOG0647 mRNA export protein (c 99.9 1.1E-23 2.4E-28 160.9 22.0 233 53-325 29-275 (347)
93 KOG1332 Vesicle coat complex C 99.9 8.7E-24 1.9E-28 157.0 20.4 243 15-288 24-286 (299)
94 KOG0772 Uncharacterized conser 99.9 1.4E-24 3E-29 176.9 17.5 254 48-321 164-429 (641)
95 KOG0646 WD40 repeat protein [G 99.9 5.9E-24 1.3E-28 171.2 20.8 256 22-325 16-301 (476)
96 KOG0294 WD40 repeat-containing 99.9 3.8E-23 8.3E-28 158.9 23.3 258 3-310 42-306 (362)
97 KOG1036 Mitotic spindle checkp 99.9 6E-23 1.3E-27 157.4 23.8 231 51-325 13-256 (323)
98 KOG0646 WD40 repeat protein [G 99.9 7.5E-24 1.6E-28 170.6 19.7 225 60-314 88-332 (476)
99 KOG0293 WD40 repeat-containing 99.9 3.6E-24 7.9E-29 170.0 17.1 232 15-289 282-514 (519)
100 KOG0274 Cdc4 and related F-box 99.9 1.4E-23 3E-28 181.7 22.0 216 65-325 218-435 (537)
101 KOG1332 Vesicle coat complex C 99.9 7.1E-24 1.5E-28 157.4 17.1 235 65-324 23-279 (299)
102 KOG0269 WD40 repeat-containing 99.9 8.1E-24 1.7E-28 180.1 19.7 268 18-325 54-334 (839)
103 KOG0278 Serine/threonine kinas 99.9 2.3E-24 5.1E-29 160.6 14.3 229 15-292 72-301 (334)
104 KOG0641 WD40 repeat protein [G 99.9 1.2E-21 2.5E-26 144.4 28.1 254 48-325 86-343 (350)
105 KOG2048 WD40 repeat protein [G 99.9 2.3E-22 5E-27 169.0 27.4 272 15-325 38-313 (691)
106 KOG0269 WD40 repeat-containing 99.9 1.9E-24 4.1E-29 183.9 14.7 239 15-290 101-342 (839)
107 KOG1274 WD40 repeat protein [G 99.9 1.7E-22 3.6E-27 175.2 26.6 258 15-316 26-285 (933)
108 KOG1408 WD40 repeat protein [F 99.9 2.3E-23 5E-28 176.2 20.5 279 12-325 390-707 (1080)
109 KOG0639 Transducin-like enhanc 99.9 1.1E-23 2.4E-28 171.3 17.1 240 49-325 417-698 (705)
110 KOG0307 Vesicle coat complex C 99.9 4.4E-24 9.5E-29 189.0 15.6 233 66-326 81-322 (1049)
111 KOG1408 WD40 repeat protein [F 99.9 1.5E-22 3.3E-27 171.3 23.2 294 15-325 271-665 (1080)
112 KOG4378 Nuclear protein COP1 [ 99.9 6.8E-23 1.5E-27 166.5 20.3 250 21-313 54-305 (673)
113 KOG0300 WD40 repeat-containing 99.9 1.1E-22 2.3E-27 156.9 19.8 231 65-325 160-470 (481)
114 KOG1539 WD repeat protein [Gen 99.9 1.6E-21 3.5E-26 167.6 28.7 280 15-326 125-601 (910)
115 KOG0264 Nucleosome remodeling 99.9 2.3E-22 5.1E-27 161.6 22.2 241 15-288 138-404 (422)
116 KOG0643 Translation initiation 99.9 3.9E-22 8.5E-27 150.1 22.0 196 100-325 7-214 (327)
117 KOG4283 Transcription-coupled 99.9 2.5E-22 5.5E-27 153.2 20.3 203 61-290 52-278 (397)
118 KOG2445 Nuclear pore complex c 99.9 3.3E-21 7.2E-26 147.9 24.7 257 51-326 13-313 (361)
119 KOG0267 Microtubule severing p 99.9 5.9E-24 1.3E-28 179.7 10.4 221 63-321 38-258 (825)
120 KOG0302 Ribosome Assembly prot 99.9 2.4E-22 5.1E-27 158.1 18.4 195 122-325 164-372 (440)
121 KOG0302 Ribosome Assembly prot 99.9 9E-22 1.9E-26 154.8 21.0 234 64-324 164-432 (440)
122 KOG0321 WD40 repeat-containing 99.9 1.7E-21 3.8E-26 162.8 23.9 299 8-325 56-385 (720)
123 KOG0288 WD40 repeat protein Ti 99.9 1.4E-22 2.9E-27 161.1 16.5 225 15-285 232-458 (459)
124 KOG2048 WD40 repeat protein [G 99.9 4.3E-21 9.3E-26 161.4 26.2 235 53-325 27-269 (691)
125 KOG2445 Nuclear pore complex c 99.9 2.5E-21 5.4E-26 148.5 22.5 265 15-311 26-342 (361)
126 KOG1274 WD40 repeat protein [G 99.9 2.8E-21 6.1E-26 167.7 25.6 232 53-325 15-256 (933)
127 KOG0305 Anaphase promoting com 99.9 6.9E-22 1.5E-26 165.5 21.1 229 15-290 230-463 (484)
128 KOG2096 WD40 repeat protein [G 99.9 1.6E-21 3.5E-26 150.3 21.1 274 15-325 99-396 (420)
129 KOG0640 mRNA cleavage stimulat 99.9 1.1E-22 2.3E-27 156.3 14.4 207 101-325 110-329 (430)
130 KOG0299 U3 snoRNP-associated p 99.9 1.7E-21 3.6E-26 156.9 21.1 228 11-277 211-444 (479)
131 KOG1034 Transcriptional repres 99.9 7.7E-21 1.7E-25 147.1 23.1 286 11-325 51-377 (385)
132 KOG0650 WD40 repeat nucleolar 99.9 2E-21 4.2E-26 161.4 21.0 281 4-326 405-730 (733)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.3E-19 5E-24 148.6 32.9 257 16-324 3-272 (300)
134 KOG4328 WD40 protein [Function 99.9 3.1E-21 6.7E-26 155.3 20.5 274 15-321 201-484 (498)
135 KOG0973 Histone transcription 99.9 3.3E-21 7.1E-26 170.2 22.2 248 57-326 17-307 (942)
136 KOG2919 Guanine nucleotide-bin 99.9 6E-21 1.3E-25 147.5 20.3 279 15-322 62-361 (406)
137 KOG0267 Microtubule severing p 99.9 2.3E-23 5.1E-28 176.1 7.3 215 68-326 7-221 (825)
138 KOG0268 Sof1-like rRNA process 99.9 1E-22 2.2E-27 159.4 10.0 196 100-326 63-297 (433)
139 KOG0270 WD40 repeat-containing 99.9 5E-21 1.1E-25 153.6 19.1 246 13-293 191-454 (463)
140 KOG0301 Phospholipase A2-activ 99.9 8.6E-21 1.9E-25 160.0 19.6 217 67-326 27-244 (745)
141 KOG0641 WD40 repeat protein [G 99.9 4.8E-19 1E-23 130.6 25.3 236 15-288 102-349 (350)
142 KOG4283 Transcription-coupled 99.9 9.8E-21 2.1E-25 144.6 17.0 205 101-324 41-269 (397)
143 KOG0270 WD40 repeat-containing 99.9 3.8E-20 8.2E-25 148.6 21.2 229 62-320 189-438 (463)
144 KOG2055 WD40 repeat protein [G 99.9 5.8E-20 1.2E-24 148.3 21.5 270 16-325 227-506 (514)
145 KOG1188 WD40 repeat protein [G 99.9 9.2E-21 2E-25 147.4 15.6 231 66-325 41-340 (376)
146 KOG1517 Guanine nucleotide bin 99.9 1.6E-19 3.5E-24 159.1 22.9 278 15-325 1077-1375(1387)
147 KOG1445 Tumor-specific antigen 99.9 1.3E-19 2.8E-24 151.9 20.4 157 165-325 630-788 (1012)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1E-17 2.2E-22 138.7 31.6 250 17-311 46-300 (300)
149 KOG0650 WD40 repeat nucleolar 99.8 8.5E-20 1.8E-24 151.8 17.8 244 50-325 399-674 (733)
150 KOG1007 WD repeat protein TSSC 99.8 4.1E-19 8.9E-24 135.4 20.0 198 104-325 124-355 (370)
151 KOG2055 WD40 repeat protein [G 99.8 1.2E-19 2.6E-24 146.5 18.1 234 52-321 214-455 (514)
152 KOG2106 Uncharacterized conser 99.8 4.3E-18 9.3E-23 139.1 26.0 265 20-325 176-471 (626)
153 KOG2096 WD40 repeat protein [G 99.8 1.5E-18 3.2E-23 134.2 22.0 245 49-320 84-350 (420)
154 KOG4378 Nuclear protein COP1 [ 99.8 3.2E-19 7E-24 145.4 18.3 262 20-324 8-273 (673)
155 KOG4328 WD40 protein [Function 99.8 4.6E-19 1E-23 142.9 19.0 242 52-322 187-441 (498)
156 KOG0321 WD40 repeat-containing 99.8 4.8E-19 1E-23 148.3 19.4 249 56-325 54-341 (720)
157 KOG1007 WD repeat protein TSSC 99.8 5.5E-19 1.2E-23 134.7 17.9 231 74-325 39-283 (370)
158 KOG1063 RNA polymerase II elon 99.8 4.7E-18 1E-22 143.7 24.4 287 11-324 21-384 (764)
159 KOG0649 WD40 repeat protein [G 99.8 3.3E-18 7.2E-23 127.5 20.3 227 60-321 17-264 (325)
160 KOG0322 G-protein beta subunit 99.8 6E-19 1.3E-23 132.9 16.5 292 2-326 12-318 (323)
161 KOG0639 Transducin-like enhanc 99.8 8.4E-20 1.8E-24 149.0 12.6 183 125-324 432-615 (705)
162 KOG1273 WD40 repeat protein [G 99.8 4.2E-18 9.1E-23 131.5 20.3 261 15-319 36-311 (405)
163 KOG1587 Cytoplasmic dynein int 99.8 2.3E-17 4.9E-22 142.4 23.0 255 15-289 256-517 (555)
164 KOG2110 Uncharacterized conser 99.8 1.6E-16 3.5E-21 125.3 25.3 223 62-325 14-242 (391)
165 KOG0290 Conserved WD40 repeat- 99.8 1.4E-17 2.9E-22 127.3 18.5 280 15-321 60-356 (364)
166 KOG0642 Cell-cycle nuclear pro 99.8 3.6E-18 7.7E-23 141.3 16.3 213 102-326 293-556 (577)
167 KOG0300 WD40 repeat-containing 99.8 3.1E-18 6.7E-23 132.5 14.3 203 101-325 146-380 (481)
168 KOG0307 Vesicle coat complex C 99.8 1.4E-18 3.1E-23 154.6 12.5 242 16-291 82-330 (1049)
169 KOG1188 WD40 repeat protein [G 99.8 1.3E-17 2.9E-22 130.0 16.3 237 15-288 41-346 (376)
170 KOG1273 WD40 repeat protein [G 99.8 6.3E-17 1.4E-21 125.1 18.8 232 56-321 26-269 (405)
171 KOG1587 Cytoplasmic dynein int 99.8 1.4E-16 3E-21 137.6 23.0 277 24-324 222-509 (555)
172 KOG1009 Chromatin assembly com 99.8 2.6E-16 5.6E-21 125.5 22.3 291 5-325 17-366 (434)
173 KOG1063 RNA polymerase II elon 99.8 2.5E-16 5.4E-21 133.5 23.1 281 15-325 280-642 (764)
174 KOG2919 Guanine nucleotide-bin 99.8 1E-16 2.2E-21 124.4 18.6 253 60-326 56-322 (406)
175 PRK11028 6-phosphogluconolacto 99.8 9E-15 2E-19 122.7 31.7 276 17-325 5-298 (330)
176 KOG1524 WD40 repeat-containing 99.8 7.8E-17 1.7E-21 132.9 17.1 206 64-324 74-279 (737)
177 KOG0771 Prolactin regulatory e 99.8 4.2E-17 9E-22 130.6 14.9 186 122-325 155-348 (398)
178 KOG1517 Guanine nucleotide bin 99.8 3.8E-16 8.2E-21 138.3 22.2 235 64-321 1075-1324(1387)
179 KOG0642 Cell-cycle nuclear pro 99.7 4.9E-17 1.1E-21 134.7 14.8 257 15-299 307-572 (577)
180 COG2319 FOG: WD40 repeat [Gene 99.7 5.5E-14 1.2E-18 121.7 33.7 265 15-323 78-351 (466)
181 KOG0290 Conserved WD40 repeat- 99.7 7.1E-16 1.5E-20 118.1 18.7 222 23-278 120-356 (364)
182 KOG0303 Actin-binding protein 99.7 1.1E-16 2.3E-21 127.3 13.3 151 160-324 79-238 (472)
183 KOG1240 Protein kinase contain 99.7 4.6E-15 1E-19 133.4 24.1 245 15-289 1062-1335(1431)
184 KOG1272 WD40-repeat-containing 99.7 3.7E-17 8.1E-22 132.4 9.6 215 58-315 134-348 (545)
185 KOG1034 Transcriptional repres 99.7 2E-16 4.3E-21 123.0 13.1 248 16-288 107-383 (385)
186 KOG1538 Uncharacterized conser 99.7 2.2E-14 4.8E-19 121.7 24.5 243 53-325 14-287 (1081)
187 KOG2394 WD40 protein DMR-N9 [G 99.7 3.5E-15 7.7E-20 123.2 18.5 199 66-311 186-384 (636)
188 KOG1524 WD40 repeat-containing 99.7 1.8E-15 3.9E-20 125.0 16.6 173 122-321 74-246 (737)
189 KOG0303 Actin-binding protein 99.7 9.2E-15 2E-19 116.5 20.0 220 72-320 54-282 (472)
190 KOG4227 WD40 repeat protein [G 99.7 1.2E-14 2.7E-19 115.8 20.7 277 15-323 69-379 (609)
191 KOG1009 Chromatin assembly com 99.7 1.7E-16 3.7E-21 126.5 9.9 158 161-324 12-188 (434)
192 KOG2110 Uncharacterized conser 99.7 4E-13 8.7E-18 106.4 28.4 223 17-289 20-249 (391)
193 KOG1445 Tumor-specific antigen 99.7 3.2E-15 7E-20 126.0 17.0 193 71-289 599-799 (1012)
194 KOG0649 WD40 repeat protein [G 99.7 8.6E-13 1.9E-17 99.0 27.3 257 17-310 25-294 (325)
195 KOG1334 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 123.6 13.5 282 15-325 155-460 (559)
196 COG2319 FOG: WD40 repeat [Gene 99.7 3.8E-13 8.3E-18 116.5 29.3 227 62-324 74-307 (466)
197 KOG0322 G-protein beta subunit 99.7 4.7E-15 1E-19 112.1 14.6 156 124-287 166-322 (323)
198 KOG2321 WD40 repeat protein [G 99.6 8.7E-14 1.9E-18 116.1 21.9 277 3-322 53-334 (703)
199 KOG1523 Actin-related protein 99.6 5.1E-14 1.1E-18 109.4 19.2 235 60-322 17-269 (361)
200 KOG2139 WD40 repeat protein [G 99.6 1.6E-13 3.4E-18 108.5 20.5 225 67-319 112-363 (445)
201 KOG3881 Uncharacterized conser 99.6 8E-14 1.7E-18 111.0 18.2 208 66-312 116-342 (412)
202 KOG1963 WD40 repeat protein [G 99.6 6.2E-13 1.3E-17 116.2 24.4 278 15-325 28-316 (792)
203 KOG1310 WD40 repeat protein [G 99.6 1.4E-14 3E-19 120.2 13.4 230 49-295 48-310 (758)
204 PF08662 eIF2A: Eukaryotic tra 99.6 9.7E-14 2.1E-18 106.2 17.0 100 214-322 60-164 (194)
205 PRK11028 6-phosphogluconolacto 99.6 1.3E-11 2.8E-16 103.7 30.5 241 18-288 51-304 (330)
206 KOG4227 WD40 repeat protein [G 99.6 1.9E-13 4.1E-18 109.2 17.2 240 50-322 55-313 (609)
207 KOG2111 Uncharacterized conser 99.6 3.9E-12 8.5E-17 99.0 23.7 210 75-324 75-315 (346)
208 PF08662 eIF2A: Eukaryotic tra 99.6 2.4E-13 5.2E-18 104.0 16.9 127 153-297 50-187 (194)
209 KOG1240 Protein kinase contain 99.6 4.6E-13 9.9E-18 120.9 19.9 220 80-321 1034-1261(1431)
210 KOG1523 Actin-related protein 99.6 8E-14 1.7E-18 108.3 13.2 153 162-325 10-170 (361)
211 PRK01742 tolB translocation pr 99.6 1.3E-12 2.9E-17 113.1 22.0 236 23-312 183-426 (429)
212 KOG1310 WD40 repeat protein [G 99.6 3.2E-14 7E-19 118.1 11.0 157 160-325 48-225 (758)
213 KOG2111 Uncharacterized conser 99.6 1.2E-11 2.6E-16 96.4 24.1 170 133-324 75-249 (346)
214 KOG2394 WD40 protein DMR-N9 [G 99.5 1.3E-13 2.8E-18 114.2 13.5 148 171-325 182-356 (636)
215 KOG0771 Prolactin regulatory e 99.5 4.1E-13 8.8E-18 108.1 14.3 197 63-289 154-355 (398)
216 KOG1354 Serine/threonine prote 99.5 5.2E-12 1.1E-16 99.4 19.9 257 15-290 38-361 (433)
217 PRK01742 tolB translocation pr 99.5 2.6E-12 5.6E-17 111.4 20.3 206 74-325 183-395 (429)
218 KOG1354 Serine/threonine prote 99.5 1.1E-12 2.5E-17 103.0 15.9 261 49-323 23-351 (433)
219 KOG0644 Uncharacterized conser 99.5 7.6E-14 1.6E-18 121.2 10.1 252 15-318 203-455 (1113)
220 KOG1272 WD40-repeat-containing 99.5 7.3E-14 1.6E-18 113.7 9.3 253 15-320 142-398 (545)
221 KOG2139 WD40 repeat protein [G 99.5 2.6E-12 5.7E-17 101.7 16.7 182 122-317 109-296 (445)
222 KOG0280 Uncharacterized conser 99.5 2.1E-11 4.6E-16 94.0 20.9 226 67-320 87-320 (339)
223 KOG0974 WD-repeat protein WDR6 99.5 2.2E-11 4.7E-16 108.6 23.2 185 122-325 98-282 (967)
224 PF02239 Cytochrom_D1: Cytochr 99.5 7.8E-11 1.7E-15 99.2 25.4 277 17-324 51-338 (369)
225 TIGR03300 assembly_YfgL outer 99.4 2.7E-10 6E-15 97.5 26.8 261 15-325 66-373 (377)
226 KOG4547 WD40 repeat-containing 99.4 4.1E-11 8.9E-16 100.7 19.6 178 122-312 4-195 (541)
227 KOG1963 WD40 repeat protein [G 99.4 1.3E-10 2.7E-15 102.0 22.9 186 122-325 170-369 (792)
228 KOG1538 Uncharacterized conser 99.4 1.6E-10 3.4E-15 98.8 22.0 227 24-289 33-294 (1081)
229 KOG4497 Uncharacterized conser 99.4 3.8E-12 8.2E-17 99.7 11.3 214 62-326 17-235 (447)
230 PRK02889 tolB translocation pr 99.4 1.4E-10 3E-15 100.5 22.3 205 75-323 176-392 (427)
231 PRK03629 tolB translocation pr 99.4 7E-10 1.5E-14 96.1 25.7 205 76-324 180-396 (429)
232 KOG1334 WD40 repeat protein [G 99.4 1.4E-11 3E-16 101.2 13.5 250 49-324 140-417 (559)
233 PRK03629 tolB translocation pr 99.4 8.8E-10 1.9E-14 95.5 25.7 211 58-312 203-428 (429)
234 PF02239 Cytochrom_D1: Cytochr 99.4 4E-09 8.6E-14 89.0 28.4 201 68-297 9-211 (369)
235 KOG4547 WD40 repeat-containing 99.4 2E-10 4.4E-15 96.6 20.1 199 65-289 5-221 (541)
236 PRK04922 tolB translocation pr 99.4 3.5E-10 7.7E-15 98.3 22.0 204 75-322 184-399 (433)
237 PRK05137 tolB translocation pr 99.4 1.4E-09 3.1E-14 94.6 25.6 203 76-322 183-397 (435)
238 KOG4532 WD40-like repeat conta 99.3 7.9E-10 1.7E-14 84.5 20.5 242 13-289 83-332 (344)
239 KOG0280 Uncharacterized conser 99.3 9.5E-11 2.1E-15 90.5 15.4 223 73-323 44-277 (339)
240 KOG0644 Uncharacterized conser 99.3 3.5E-12 7.6E-17 111.1 8.3 219 62-324 199-419 (1113)
241 KOG0974 WD-repeat protein WDR6 99.3 7.1E-11 1.5E-15 105.4 16.5 191 64-289 98-289 (967)
242 KOG1064 RAVE (regulator of V-A 99.3 7.2E-12 1.6E-16 117.3 10.5 219 57-324 2212-2439(2439)
243 PF10282 Lactonase: Lactonase, 99.3 3.9E-08 8.4E-13 82.9 32.3 274 17-322 2-312 (345)
244 KOG4497 Uncharacterized conser 99.3 5.2E-09 1.1E-13 82.4 24.6 277 15-323 62-424 (447)
245 KOG2321 WD40 repeat protein [G 99.3 1.1E-10 2.3E-15 98.0 16.2 187 68-289 148-344 (703)
246 KOG4532 WD40-like repeat conta 99.3 2.5E-09 5.4E-14 81.8 19.3 227 65-323 84-324 (344)
247 PRK04922 tolB translocation pr 99.3 5E-09 1.1E-13 91.1 24.3 210 58-311 208-432 (433)
248 PRK02889 tolB translocation pr 99.3 9.2E-09 2E-13 89.3 25.5 212 59-312 201-425 (427)
249 TIGR02800 propeller_TolB tol-p 99.2 1.5E-08 3.2E-13 88.2 25.9 175 122-323 200-386 (417)
250 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.1E-07 2.3E-12 78.8 28.2 240 22-297 75-339 (352)
251 TIGR02658 TTQ_MADH_Hv methylam 99.2 7.9E-07 1.7E-11 73.7 33.4 270 13-324 11-323 (352)
252 COG5170 CDC55 Serine/threonine 99.2 2.7E-10 5.9E-15 88.8 12.1 258 50-322 25-358 (460)
253 COG2706 3-carboxymuconate cycl 99.2 5.1E-07 1.1E-11 72.4 30.6 268 23-323 15-312 (346)
254 KOG1064 RAVE (regulator of V-A 99.2 2.3E-10 4.9E-15 107.6 11.4 168 122-324 2219-2391(2439)
255 PF10282 Lactonase: Lactonase, 99.2 2.1E-06 4.5E-11 72.5 33.8 266 22-309 60-345 (345)
256 KOG4190 Uncharacterized conser 99.1 1.8E-10 3.9E-15 96.6 7.5 176 101-297 733-915 (1034)
257 KOG4714 Nucleoporin [Nuclear s 99.1 2.6E-09 5.7E-14 81.3 12.6 198 67-289 49-255 (319)
258 KOG2315 Predicted translation 99.1 7.5E-08 1.6E-12 81.1 21.1 120 183-321 250-374 (566)
259 PRK05137 tolB translocation pr 99.1 3.9E-08 8.5E-13 85.7 20.7 146 161-322 200-354 (435)
260 PF15492 Nbas_N: Neuroblastoma 99.1 7.8E-07 1.7E-11 69.3 25.1 244 14-298 8-269 (282)
261 KOG1409 Uncharacterized conser 99.1 4.7E-08 1E-12 77.6 18.6 227 15-289 37-271 (404)
262 TIGR03300 assembly_YfgL outer 99.1 1.3E-07 2.7E-12 81.1 23.2 231 15-285 106-376 (377)
263 PF13360 PQQ_2: PQQ-like domai 99.1 9E-07 2E-11 70.7 26.2 229 22-295 1-237 (238)
264 PRK11138 outer membrane biogen 99.1 3.3E-07 7.2E-12 78.9 25.2 264 15-324 70-387 (394)
265 PRK00178 tolB translocation pr 99.0 3.6E-07 7.8E-12 79.7 24.1 203 76-322 180-394 (430)
266 COG4946 Uncharacterized protei 99.0 9.5E-07 2.1E-11 73.4 24.1 220 68-318 280-505 (668)
267 KOG1409 Uncharacterized conser 99.0 8.6E-08 1.9E-12 76.1 17.3 224 67-325 38-264 (404)
268 PF08450 SGL: SMP-30/Gluconola 99.0 4.4E-06 9.6E-11 67.1 27.8 213 64-319 11-243 (246)
269 COG5170 CDC55 Serine/threonine 99.0 3.4E-08 7.3E-13 77.4 14.4 263 15-288 39-367 (460)
270 PRK04792 tolB translocation pr 99.0 4.4E-07 9.6E-12 79.2 22.9 142 165-323 264-414 (448)
271 TIGR02800 propeller_TolB tol-p 99.0 1.3E-07 2.8E-12 82.3 19.7 146 162-323 189-343 (417)
272 KOG2041 WD40 repeat protein [G 99.0 1E-07 2.2E-12 82.8 18.1 269 15-319 27-326 (1189)
273 PRK00178 tolB translocation pr 99.0 1.1E-06 2.3E-11 76.8 25.0 211 58-312 203-428 (430)
274 PRK01029 tolB translocation pr 99.0 8.6E-07 1.9E-11 76.8 23.9 145 163-320 231-389 (428)
275 KOG2314 Translation initiation 98.9 3.1E-07 6.7E-12 77.5 19.3 254 24-322 282-558 (698)
276 PRK01029 tolB translocation pr 98.9 2.7E-06 5.8E-11 73.8 25.9 133 165-312 283-425 (428)
277 PLN02919 haloacid dehalogenase 98.9 3.6E-06 7.9E-11 80.6 28.9 251 64-325 579-882 (1057)
278 KOG2695 WD40 repeat protein [G 98.9 3.9E-09 8.5E-14 83.6 6.9 142 162-310 252-401 (425)
279 PLN02919 haloacid dehalogenase 98.9 7.7E-06 1.7E-10 78.4 29.5 162 124-292 696-892 (1057)
280 KOG3914 WD repeat protein WDR4 98.9 1.3E-07 2.8E-12 76.5 14.6 162 61-255 70-232 (390)
281 KOG2041 WD40 repeat protein [G 98.9 9.7E-08 2.1E-12 83.0 14.6 239 57-325 18-282 (1189)
282 KOG4714 Nucleoporin [Nuclear s 98.8 1.8E-08 4E-13 76.8 8.5 144 173-324 100-247 (319)
283 COG2706 3-carboxymuconate cycl 98.8 4.1E-05 8.8E-10 61.8 29.8 268 22-309 62-344 (346)
284 PF00400 WD40: WD domain, G-be 98.8 2.1E-08 4.5E-13 55.1 5.6 37 250-286 3-39 (39)
285 KOG3914 WD repeat protein WDR4 98.8 2.4E-07 5.2E-12 75.1 13.6 82 212-297 150-232 (390)
286 KOG4190 Uncharacterized conser 98.8 2E-07 4.3E-12 78.8 13.2 272 15-325 748-1030(1034)
287 KOG1275 PAB-dependent poly(A) 98.8 3.4E-07 7.5E-12 81.6 14.8 94 183-287 245-341 (1118)
288 PRK04792 tolB translocation pr 98.8 7E-07 1.5E-11 78.0 16.9 144 162-322 217-370 (448)
289 KOG2695 WD40 repeat protein [G 98.8 1.3E-07 2.7E-12 75.2 10.7 166 69-267 228-401 (425)
290 COG5354 Uncharacterized protei 98.8 1.7E-05 3.7E-10 66.6 23.5 99 214-319 275-377 (561)
291 KOG2314 Translation initiation 98.8 5.6E-06 1.2E-10 70.2 20.8 221 62-322 258-513 (698)
292 PRK11138 outer membrane biogen 98.8 1.3E-05 2.7E-10 69.2 24.1 233 15-287 121-393 (394)
293 PF15492 Nbas_N: Neuroblastoma 98.7 2.9E-05 6.3E-10 60.8 22.8 196 122-326 7-254 (282)
294 PF13360 PQQ_2: PQQ-like domai 98.7 1.3E-05 2.7E-10 64.1 21.8 210 74-324 2-223 (238)
295 COG5354 Uncharacterized protei 98.7 9.2E-06 2E-10 68.2 21.0 208 76-323 109-337 (561)
296 PF04762 IKI3: IKI3 family; I 98.7 1.8E-05 3.8E-10 74.7 24.9 203 101-322 73-325 (928)
297 PF04762 IKI3: IKI3 family; I 98.7 9.3E-05 2E-09 69.9 29.6 242 41-314 62-361 (928)
298 COG4946 Uncharacterized protei 98.7 7.7E-05 1.7E-09 62.4 25.1 176 122-324 276-466 (668)
299 KOG2315 Predicted translation 98.7 2.3E-06 5.1E-11 72.4 16.7 150 75-269 251-411 (566)
300 KOG0882 Cyclophilin-related pe 98.7 1.2E-06 2.6E-11 72.3 14.0 251 15-296 21-313 (558)
301 KOG1912 WD40 repeat protein [G 98.6 2.5E-05 5.4E-10 69.1 22.3 198 12-244 77-303 (1062)
302 KOG2114 Vacuolar assembly/sort 98.6 2.6E-05 5.7E-10 69.6 22.1 209 63-299 33-255 (933)
303 KOG0309 Conserved WD40 repeat- 98.6 1.9E-07 4.1E-12 81.5 8.9 151 164-325 69-226 (1081)
304 KOG1832 HIV-1 Vpr-binding prot 98.6 3.3E-08 7.3E-13 87.7 4.2 205 63-317 1111-1317(1516)
305 KOG2066 Vacuolar assembly/sort 98.6 1.3E-06 2.8E-11 77.0 13.3 162 122-316 48-220 (846)
306 cd00216 PQQ_DH Dehydrogenases 98.6 0.00013 2.8E-09 64.7 25.7 268 15-324 62-417 (488)
307 KOG1275 PAB-dependent poly(A) 98.6 2.4E-06 5.2E-11 76.5 14.4 176 123-325 147-336 (1118)
308 PF11768 DUF3312: Protein of u 98.5 0.00026 5.6E-09 61.1 25.0 73 212-289 258-330 (545)
309 cd00216 PQQ_DH Dehydrogenases 98.5 0.00024 5.2E-09 63.0 25.8 104 176-298 303-434 (488)
310 PF14783 BBS2_Mid: Ciliary BBS 98.5 2.5E-05 5.5E-10 52.5 13.9 91 66-188 16-110 (111)
311 KOG0309 Conserved WD40 repeat- 98.5 1.4E-06 3.1E-11 76.1 10.1 171 123-312 81-256 (1081)
312 PRK04043 tolB translocation pr 98.4 0.00046 1E-08 59.7 25.1 142 162-322 232-388 (419)
313 KOG1912 WD40 repeat protein [G 98.4 0.00027 5.8E-09 62.9 22.7 241 16-289 27-305 (1062)
314 PRK02888 nitrous-oxide reducta 98.4 0.00015 3.3E-09 64.0 21.2 104 212-319 319-449 (635)
315 PF00400 WD40: WD domain, G-be 98.4 6.4E-07 1.4E-11 49.0 3.9 35 290-325 1-35 (39)
316 PF11768 DUF3312: Protein of u 98.4 0.00033 7.2E-09 60.5 21.5 83 151-246 248-330 (545)
317 KOG2066 Vacuolar assembly/sort 98.3 0.00018 3.9E-09 64.0 19.8 174 65-288 49-233 (846)
318 KOG1645 RING-finger-containing 98.3 0.00018 3.9E-09 59.0 17.1 242 17-288 209-461 (463)
319 KOG0882 Cyclophilin-related pe 98.3 6.6E-06 1.4E-10 68.0 9.1 189 122-325 19-225 (558)
320 PF07433 DUF1513: Protein of u 98.3 0.00023 4.9E-09 57.5 17.3 151 164-323 6-184 (305)
321 PF06977 SdiA-regulated: SdiA- 98.2 0.0015 3.2E-08 51.9 21.2 210 49-285 19-247 (248)
322 KOG4640 Anaphase-promoting com 98.2 8E-06 1.7E-10 70.4 8.8 95 213-311 20-115 (665)
323 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0027 5.8E-08 54.9 24.4 209 76-314 62-272 (410)
324 PF03178 CPSF_A: CPSF A subuni 98.2 0.0014 3.1E-08 54.8 22.0 224 75-325 2-259 (321)
325 PF07433 DUF1513: Protein of u 98.2 0.0023 4.9E-08 51.8 23.8 219 67-321 19-276 (305)
326 KOG2114 Vacuolar assembly/sort 98.2 0.00027 5.9E-09 63.5 17.5 182 122-319 34-233 (933)
327 KOG1008 Uncharacterized conser 98.2 9E-07 2E-11 76.2 2.1 192 64-289 69-276 (783)
328 PRK04043 tolB translocation pr 98.1 0.0012 2.7E-08 57.1 20.3 141 164-322 189-339 (419)
329 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0026 5.5E-08 49.6 19.6 187 66-297 24-215 (354)
330 PF03178 CPSF_A: CPSF A subuni 98.1 0.0043 9.4E-08 52.0 22.6 183 65-285 42-262 (321)
331 KOG1645 RING-finger-containing 98.1 4.9E-05 1.1E-09 62.2 10.2 77 212-291 192-269 (463)
332 PF08596 Lgl_C: Lethal giant l 98.0 0.0015 3.1E-08 55.9 19.1 253 54-322 4-327 (395)
333 PF06977 SdiA-regulated: SdiA- 98.0 0.0034 7.3E-08 49.9 19.9 191 104-319 22-239 (248)
334 KOG1920 IkappaB kinase complex 98.0 0.00064 1.4E-08 63.5 17.6 196 101-319 66-307 (1265)
335 PF06433 Me-amine-dh_H: Methyl 98.0 0.0034 7.3E-08 51.5 19.6 207 63-298 104-330 (342)
336 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.011 2.4E-07 53.0 27.1 60 237-298 441-500 (527)
337 KOG1920 IkappaB kinase complex 98.0 0.0096 2.1E-07 56.1 23.8 209 52-291 69-325 (1265)
338 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0012 2.5E-08 51.4 15.2 111 174-298 23-133 (354)
339 PRK02888 nitrous-oxide reducta 98.0 0.0088 1.9E-07 53.3 22.5 86 236-324 295-397 (635)
340 PF08553 VID27: VID27 cytoplas 98.0 0.0012 2.6E-08 60.7 17.8 139 131-287 502-646 (794)
341 PF08553 VID27: VID27 cytoplas 97.9 0.00046 9.9E-09 63.3 14.2 135 174-320 493-637 (794)
342 PF04053 Coatomer_WDAD: Coatom 97.9 0.0011 2.3E-08 57.5 15.8 132 164-323 34-166 (443)
343 KOG3621 WD40 repeat-containing 97.9 0.00023 4.9E-09 62.6 11.1 136 164-310 35-179 (726)
344 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.019 4.2E-07 51.4 29.3 212 15-247 70-335 (527)
345 smart00320 WD40 WD40 repeats. 97.7 0.00011 2.5E-09 39.1 4.9 37 250-286 4-40 (40)
346 KOG3630 Nuclear pore complex, 97.6 0.001 2.2E-08 61.9 11.9 155 159-319 97-261 (1405)
347 KOG3621 WD40 repeat-containing 97.6 0.00042 9.1E-09 61.0 9.0 99 226-325 44-148 (726)
348 KOG1008 Uncharacterized conser 97.6 1.5E-05 3.3E-10 68.9 -0.2 182 124-323 71-266 (783)
349 KOG3617 WD40 and TPR repeat-co 97.6 0.00025 5.4E-09 63.8 7.0 108 167-288 20-131 (1416)
350 KOG1832 HIV-1 Vpr-binding prot 97.5 8.1E-05 1.7E-09 67.1 4.0 141 162-317 1101-1246(1516)
351 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.012 2.6E-07 39.8 13.1 100 216-324 2-107 (111)
352 PF08450 SGL: SMP-30/Gluconola 97.5 0.035 7.7E-07 44.5 27.1 105 163-277 134-244 (246)
353 KOG2444 WD40 repeat protein [G 97.5 0.00028 6E-09 53.7 5.5 96 228-324 71-170 (238)
354 PF00780 CNH: CNH domain; Int 97.5 0.043 9.4E-07 44.8 28.5 256 10-299 3-266 (275)
355 PF08596 Lgl_C: Lethal giant l 97.4 0.067 1.5E-06 46.0 20.1 173 122-297 12-252 (395)
356 KOG3617 WD40 and TPR repeat-co 97.4 0.014 3.1E-07 53.1 15.9 244 56-318 62-372 (1416)
357 KOG4640 Anaphase-promoting com 97.4 0.0015 3.2E-08 57.0 9.5 94 162-267 20-114 (665)
358 KOG2395 Protein involved in va 97.3 0.0042 9E-08 53.3 11.3 132 176-320 348-490 (644)
359 TIGR03074 PQQ_membr_DH membran 97.3 0.15 3.3E-06 47.7 25.1 228 65-297 194-486 (764)
360 COG3386 Gluconolactonase [Carb 97.3 0.073 1.6E-06 44.0 21.5 215 67-321 39-275 (307)
361 PF05694 SBP56: 56kDa selenium 97.3 0.095 2.1E-06 44.7 20.1 160 153-319 169-391 (461)
362 COG0823 TolB Periplasmic compo 97.3 0.0083 1.8E-07 51.9 12.8 145 163-322 193-346 (425)
363 KOG2079 Vacuolar assembly/sort 97.2 0.0017 3.7E-08 60.1 8.6 92 229-321 101-195 (1206)
364 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0016 3.6E-08 36.7 5.1 35 162-197 11-45 (47)
365 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0021 4.5E-08 36.3 5.0 34 258-292 11-44 (47)
366 KOG2395 Protein involved in va 97.1 0.021 4.6E-07 49.2 12.8 142 127-288 350-500 (644)
367 KOG4441 Proteins containing BT 97.0 0.084 1.8E-06 47.9 17.3 136 173-324 380-534 (571)
368 smart00320 WD40 WD40 repeats. 97.0 0.002 4.4E-08 33.9 4.4 35 290-325 2-36 (40)
369 COG0823 TolB Periplasmic compo 96.8 0.024 5.1E-07 49.2 11.6 136 165-316 240-384 (425)
370 PF04841 Vps16_N: Vps16, N-ter 96.8 0.33 7.2E-06 42.2 23.8 70 214-288 217-287 (410)
371 KOG2444 WD40 repeat protein [G 96.7 0.0094 2E-07 45.6 7.1 106 174-289 70-178 (238)
372 PF12234 Rav1p_C: RAVE protein 96.6 0.3 6.5E-06 44.3 17.0 115 164-288 31-156 (631)
373 COG3490 Uncharacterized protei 96.6 0.22 4.9E-06 39.8 14.3 151 163-323 68-247 (366)
374 COG3391 Uncharacterized conser 96.6 0.35 7.5E-06 41.7 17.0 140 165-319 76-224 (381)
375 KOG4499 Ca2+-binding protein R 96.6 0.24 5.2E-06 38.4 18.1 103 217-321 161-275 (310)
376 PF06433 Me-amine-dh_H: Methyl 96.5 0.39 8.4E-06 39.9 23.7 219 71-323 63-312 (342)
377 PF00780 CNH: CNH domain; Int 96.5 0.36 7.8E-06 39.4 22.0 217 64-322 6-247 (275)
378 PHA02713 hypothetical protein; 96.4 0.34 7.4E-06 44.0 16.3 72 226-299 463-544 (557)
379 PF04053 Coatomer_WDAD: Coatom 96.3 0.64 1.4E-05 40.7 20.0 172 67-289 81-263 (443)
380 KOG2377 Uncharacterized conser 96.3 0.15 3.2E-06 43.5 12.5 152 122-289 32-186 (657)
381 PF00930 DPPIV_N: Dipeptidyl p 96.3 0.6 1.3E-05 39.8 22.5 147 165-318 186-344 (353)
382 PF10168 Nup88: Nuclear pore c 96.3 0.5 1.1E-05 44.0 16.9 91 164-255 86-189 (717)
383 KOG2079 Vacuolar assembly/sort 96.2 0.035 7.5E-07 52.0 9.0 71 124-204 100-172 (1206)
384 PF15390 DUF4613: Domain of un 96.1 0.57 1.2E-05 41.5 15.1 121 162-289 56-187 (671)
385 PF08728 CRT10: CRT10; InterP 96.0 0.52 1.1E-05 43.3 15.1 116 122-244 113-245 (717)
386 PF05694 SBP56: 56kDa selenium 95.9 0.97 2.1E-05 38.9 20.9 136 132-276 221-391 (461)
387 KOG2280 Vacuolar assembly/sort 95.8 0.99 2.1E-05 41.2 15.9 190 75-297 64-255 (829)
388 COG3204 Uncharacterized protei 95.8 0.8 1.7E-05 37.0 19.0 174 54-246 88-264 (316)
389 TIGR03074 PQQ_membr_DH membran 95.7 2 4.3E-05 40.6 25.2 69 183-253 413-484 (764)
390 PRK13616 lipoprotein LpqB; Pro 95.6 0.67 1.5E-05 42.3 14.5 135 164-317 351-512 (591)
391 PHA02713 hypothetical protein; 95.6 1.8 3.8E-05 39.5 18.9 136 173-324 351-524 (557)
392 PF12234 Rav1p_C: RAVE protein 95.6 0.64 1.4E-05 42.3 14.1 111 67-192 43-156 (631)
393 PF10647 Gmad1: Lipoprotein Lp 95.6 0.98 2.1E-05 36.4 16.2 145 164-323 25-187 (253)
394 PF14727 PHTB1_N: PTHB1 N-term 95.6 1.4 3.1E-05 38.2 27.8 157 14-192 37-204 (418)
395 KOG1897 Damage-specific DNA bi 95.5 2.2 4.8E-05 40.4 24.2 277 2-321 583-888 (1096)
396 PF14781 BBS2_N: Ciliary BBSom 95.5 0.53 1.2E-05 33.2 12.9 110 124-246 11-126 (136)
397 PF10313 DUF2415: Uncharacteri 95.5 0.098 2.1E-06 28.6 5.4 32 259-290 1-35 (43)
398 COG3391 Uncharacterized conser 95.4 1.5 3.3E-05 37.8 23.4 196 67-297 88-292 (381)
399 PF02333 Phytase: Phytase; In 95.4 1.5 3.1E-05 37.4 21.3 218 15-255 69-300 (381)
400 PF02897 Peptidase_S9_N: Proly 95.4 1.2 2.6E-05 38.9 15.1 112 166-290 127-262 (414)
401 PF00930 DPPIV_N: Dipeptidyl p 95.2 0.59 1.3E-05 39.8 12.5 35 163-198 43-77 (353)
402 KOG4441 Proteins containing BT 95.2 2.4 5.1E-05 38.8 20.8 191 66-292 334-550 (571)
403 PF05096 Glu_cyclase_2: Glutam 95.1 1.4 2.9E-05 35.4 16.8 129 154-297 36-166 (264)
404 KOG1897 Damage-specific DNA bi 95.1 3.1 6.7E-05 39.5 25.9 272 14-324 269-559 (1096)
405 TIGR02604 Piru_Ver_Nterm putat 95.0 1.4 3E-05 37.8 14.0 143 163-320 14-202 (367)
406 KOG4460 Nuclear pore complex, 94.9 0.75 1.6E-05 40.2 11.6 83 164-247 105-200 (741)
407 PF08728 CRT10: CRT10; InterP 94.8 0.77 1.7E-05 42.3 12.3 161 125-288 51-246 (717)
408 PF14655 RAB3GAP2_N: Rab3 GTPa 94.7 0.77 1.7E-05 39.7 11.5 97 167-267 6-117 (415)
409 PRK13616 lipoprotein LpqB; Pro 94.6 0.27 5.8E-06 44.8 9.2 96 215-320 351-466 (591)
410 COG3490 Uncharacterized protei 94.4 0.98 2.1E-05 36.3 10.5 101 217-320 71-180 (366)
411 KOG4499 Ca2+-binding protein R 94.2 2.1 4.6E-05 33.5 15.3 95 166-268 161-263 (310)
412 PF05096 Glu_cyclase_2: Glutam 94.2 2.4 5.3E-05 34.0 24.0 172 123-319 56-248 (264)
413 PF10313 DUF2415: Uncharacteri 94.1 0.28 6.2E-06 26.8 5.1 30 164-193 2-34 (43)
414 PF14870 PSII_BNR: Photosynthe 93.5 3 6.6E-05 34.5 12.4 103 215-321 146-252 (302)
415 PF07569 Hira: TUP1-like enhan 93.3 0.58 1.3E-05 36.7 7.6 67 226-293 21-100 (219)
416 COG5167 VID27 Protein involved 93.1 1.2 2.6E-05 38.9 9.6 131 177-320 483-622 (776)
417 TIGR02276 beta_rpt_yvtn 40-res 93.0 0.7 1.5E-05 25.0 5.8 31 268-298 1-32 (42)
418 PF14655 RAB3GAP2_N: Rab3 GTPa 92.9 5.8 0.00013 34.5 26.9 81 215-298 309-408 (415)
419 KOG2247 WD40 repeat-containing 92.8 0.014 3E-07 49.9 -2.0 142 167-324 39-181 (615)
420 KOG4659 Uncharacterized conser 92.6 12 0.00025 37.2 19.0 75 5-87 348-431 (1899)
421 PF07676 PD40: WD40-like Beta 92.6 0.7 1.5E-05 24.6 5.3 30 256-285 6-38 (39)
422 PF10214 Rrn6: RNA polymerase 92.5 10 0.00022 36.3 20.2 150 154-312 71-257 (765)
423 PF07250 Glyoxal_oxid_N: Glyox 92.3 4.9 0.00011 32.1 12.9 145 136-298 49-207 (243)
424 KOG3630 Nuclear pore complex, 92.2 3.6 7.8E-05 39.8 12.1 135 129-274 120-259 (1405)
425 PF07995 GSDH: Glucose / Sorbo 91.4 7.9 0.00017 32.7 23.0 67 259-325 253-329 (331)
426 KOG2280 Vacuolar assembly/sort 91.3 9.3 0.0002 35.4 13.3 37 163-199 217-253 (829)
427 PF11715 Nup160: Nucleoporin N 91.3 1.5 3.2E-05 40.0 8.9 69 228-296 159-256 (547)
428 PF11635 Med16: Mediator compl 91.3 14 0.0003 35.2 18.1 200 124-324 63-343 (753)
429 PF10168 Nup88: Nuclear pore c 90.8 15 0.00032 34.7 14.9 74 215-290 86-181 (717)
430 PF10647 Gmad1: Lipoprotein Lp 90.7 7.7 0.00017 31.3 11.6 100 215-320 25-130 (253)
431 COG5167 VID27 Protein involved 90.7 11 0.00025 33.2 16.1 58 229-288 575-632 (776)
432 KOG4460 Nuclear pore complex, 90.7 6.8 0.00015 34.7 11.4 81 215-297 105-207 (741)
433 PF14870 PSII_BNR: Photosynthe 90.4 9.1 0.0002 31.7 18.2 148 162-324 144-297 (302)
434 COG3204 Uncharacterized protei 90.2 9 0.0002 31.3 18.5 196 104-318 86-300 (316)
435 KOG1916 Nuclear protein, conta 90.2 1.3 2.7E-05 41.6 7.1 172 8-197 141-328 (1283)
436 smart00564 PQQ beta-propeller 89.6 1.1 2.3E-05 22.7 4.0 26 271-296 7-32 (33)
437 PF01011 PQQ: PQQ enzyme repea 89.5 1.3 2.9E-05 23.4 4.4 27 272-298 2-28 (38)
438 PF07569 Hira: TUP1-like enhan 89.5 2.8 6E-05 32.9 7.9 77 164-246 14-96 (219)
439 PHA03098 kelch-like protein; P 89.1 17 0.00037 33.0 15.0 135 173-323 342-498 (534)
440 PHA03098 kelch-like protein; P 89.1 17 0.00038 33.0 18.0 107 173-292 389-515 (534)
441 KOG1916 Nuclear protein, conta 89.0 1.2 2.7E-05 41.7 6.2 159 130-293 150-328 (1283)
442 KOG1900 Nuclear pore complex, 88.8 8.9 0.00019 37.9 11.7 177 71-289 95-273 (1311)
443 TIGR03606 non_repeat_PQQ dehyd 88.3 18 0.00038 32.0 12.8 105 216-322 32-166 (454)
444 PF14781 BBS2_N: Ciliary BBSom 88.2 7.4 0.00016 27.7 12.2 122 169-296 5-133 (136)
445 PF14727 PHTB1_N: PTHB1 N-term 88.1 17 0.00038 31.7 22.0 199 65-290 145-362 (418)
446 PF02333 Phytase: Phytase; In 87.6 17 0.00037 31.2 12.8 139 172-322 66-228 (381)
447 TIGR03118 PEPCTERM_chp_1 conse 87.4 15 0.00033 30.3 19.0 70 14-83 100-170 (336)
448 smart00564 PQQ beta-propeller 87.3 1.9 4.1E-05 21.7 4.0 26 175-200 7-32 (33)
449 PF14761 HPS3_N: Hermansky-Pud 87.1 4.2 9.2E-05 31.5 7.2 51 271-323 29-81 (215)
450 PF15390 DUF4613: Domain of un 87.0 23 0.00051 32.0 12.5 104 214-319 57-173 (671)
451 PF13449 Phytase-like: Esteras 86.9 18 0.00038 30.5 16.6 160 104-274 20-230 (326)
452 PF11715 Nup160: Nucleoporin N 86.8 4.8 0.0001 36.7 8.9 79 122-200 157-256 (547)
453 TIGR02604 Piru_Ver_Nterm putat 85.4 15 0.00032 31.6 10.7 101 216-320 16-142 (367)
454 PF07995 GSDH: Glucose / Sorbo 85.3 22 0.00047 30.1 12.5 107 164-277 3-132 (331)
455 PF12657 TFIIIC_delta: Transcr 85.2 14 0.0003 27.8 10.3 31 259-289 86-122 (173)
456 KOG1983 Tomosyn and related SN 84.8 29 0.00062 34.3 13.1 26 267-292 243-268 (993)
457 PHA02790 Kelch-like protein; P 84.5 27 0.00059 31.3 12.2 132 173-323 318-457 (480)
458 PF14761 HPS3_N: Hermansky-Pud 84.3 17 0.00038 28.2 16.8 110 67-195 30-166 (215)
459 PF01011 PQQ: PQQ enzyme repea 84.2 3.7 7.9E-05 21.7 4.2 28 176-203 2-29 (38)
460 PF14779 BBS1: Ciliary BBSome 83.8 5.7 0.00012 31.9 6.7 60 15-80 196-255 (257)
461 KOG2377 Uncharacterized conser 83.6 20 0.00043 31.3 10.1 100 213-317 66-169 (657)
462 TIGR03118 PEPCTERM_chp_1 conse 83.2 25 0.00053 29.1 24.9 261 58-324 27-326 (336)
463 PRK10115 protease 2; Provision 83.1 43 0.00093 31.7 17.7 110 165-287 129-254 (686)
464 KOG3522 Predicted guanine nucl 83.0 23 0.00049 33.5 10.9 155 7-193 540-698 (925)
465 KOG1898 Splicing factor 3b, su 83.0 49 0.0011 32.3 22.5 68 15-87 600-677 (1205)
466 PF11635 Med16: Mediator compl 82.9 46 0.00099 31.9 22.0 222 15-240 63-345 (753)
467 COG3386 Gluconolactonase [Carb 82.6 27 0.00059 29.1 21.2 101 165-277 165-274 (307)
468 PF13570 PQQ_3: PQQ-like domai 81.9 5.8 0.00013 21.1 4.5 21 269-289 20-40 (40)
469 TIGR03032 conserved hypothetic 81.7 29 0.00063 28.9 14.0 117 187-323 188-326 (335)
470 COG4590 ABC-type uncharacteriz 80.9 8.8 0.00019 33.4 7.1 147 163-319 221-375 (733)
471 PF10433 MMS1_N: Mono-function 80.5 44 0.00096 30.2 25.7 266 14-311 222-503 (504)
472 PF10395 Utp8: Utp8 family; I 79.8 52 0.0011 30.6 20.0 174 104-297 130-314 (670)
473 COG1520 FOG: WD40-like repeat 78.5 42 0.00092 28.8 20.2 196 67-298 70-278 (370)
474 PF14269 Arylsulfotran_2: Aryl 78.1 19 0.00041 29.9 8.3 75 164-244 145-219 (299)
475 PF13449 Phytase-like: Esteras 78.0 41 0.00089 28.4 16.7 98 216-317 87-230 (326)
476 PF02897 Peptidase_S9_N: Proly 77.6 48 0.001 28.9 27.9 221 58-314 128-383 (414)
477 PF08801 Nucleoporin_N: Nup133 76.9 44 0.00095 29.4 10.8 31 163-193 190-220 (422)
478 PRK05560 DNA gyrase subunit A; 76.7 76 0.0016 30.8 24.0 205 64-288 497-721 (805)
479 PF14779 BBS1: Ciliary BBSome 75.6 41 0.00089 27.2 16.5 77 103-189 176-255 (257)
480 PF14583 Pectate_lyase22: Olig 75.1 54 0.0012 28.3 22.0 106 213-322 187-303 (386)
481 PF01436 NHL: NHL repeat; Int 72.5 9.6 0.00021 18.5 3.5 23 262-284 5-27 (28)
482 COG4247 Phy 3-phytase (myo-ino 72.5 49 0.0011 26.6 14.8 147 171-325 64-228 (364)
483 PF01731 Arylesterase: Arylest 72.1 14 0.00031 24.0 4.9 50 236-289 35-85 (86)
484 KOG2247 WD40 repeat-containing 71.8 0.88 1.9E-05 39.5 -0.9 145 56-238 37-181 (615)
485 PRK13684 Ycf48-like protein; P 71.3 63 0.0014 27.4 17.4 146 162-323 172-323 (334)
486 PF03088 Str_synth: Strictosid 71.2 14 0.0003 24.3 4.7 43 275-319 32-74 (89)
487 COG5276 Uncharacterized conser 71.1 58 0.0013 26.9 17.3 157 150-321 74-233 (370)
488 PF12341 DUF3639: Protein of u 71.0 11 0.00023 18.4 3.7 26 163-190 2-27 (27)
489 PF03088 Str_synth: Strictosid 70.6 19 0.00041 23.6 5.2 44 231-276 31-74 (89)
490 PF10395 Utp8: Utp8 family; I 70.0 97 0.0021 29.0 23.2 214 67-297 41-268 (670)
491 TIGR03606 non_repeat_PQQ dehyd 68.0 89 0.0019 27.8 13.5 58 163-224 30-89 (454)
492 COG3823 Glutamine cyclotransfe 67.7 57 0.0012 25.5 12.4 123 181-319 108-247 (262)
493 PHA02790 Kelch-like protein; P 66.5 99 0.0021 27.8 18.3 104 173-292 362-474 (480)
494 KOG3522 Predicted guanine nucl 65.2 29 0.00062 32.9 7.0 134 176-322 549-689 (925)
495 KOG1896 mRNA cleavage and poly 64.6 1.6E+02 0.0035 29.6 16.8 145 65-244 1046-1212(1366)
496 TIGR03547 muta_rot_YjhT mutatr 63.2 93 0.002 26.4 14.0 40 281-323 291-332 (346)
497 KOG3616 Selective LIM binding 63.1 15 0.00033 34.2 4.8 33 259-291 15-47 (1636)
498 PF14583 Pectate_lyase22: Olig 61.0 1.1E+02 0.0024 26.5 18.8 173 125-317 50-253 (386)
499 TIGR01063 gyrA DNA gyrase, A s 60.8 1.7E+02 0.0036 28.5 24.3 205 64-288 495-718 (800)
500 KOG1900 Nuclear pore complex, 60.4 2E+02 0.0043 29.3 12.7 32 162-193 242-273 (1311)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-41 Score=264.46 Aligned_cols=279 Identities=18% Similarity=0.182 Sum_probs=223.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
.+|++|+-|.++|+||+.++ ...++. +.+..=++ |.+++++++.||+|+.||+|++||..+++.+..-.
T Consensus 128 ~~l~tGsGD~TvR~WD~~Te-----Tp~~t~--KgH~~WVl--cvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l-- 196 (480)
T KOG0271|consen 128 SRLVTGSGDTTVRLWDLDTE-----TPLFTC--KGHKNWVL--CVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL-- 196 (480)
T ss_pred ceEEecCCCceEEeeccCCC-----Ccceee--cCCccEEE--EEEECCCcchhhccccCCeEEEecCCCCCcccccc--
Confidence 68999999999999999976 222122 23444444 44566777799999999999999998887654433
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc----------------------ccccccc
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----------------------SAESSCS 152 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~----------------------~~~~~~~ 152 (326)
..|...|.+|++-+-+. .+...++++++.||.++|||+..... .+++.|+
T Consensus 197 -----~gH~K~It~Lawep~hl---~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~Dr 268 (480)
T KOG0271|consen 197 -----RGHKKWITALAWEPLHL---VPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDR 268 (480)
T ss_pred -----cCcccceeEEeeccccc---CCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCc
Confidence 27889999999755322 22445899999999999999876432 5677888
Q ss_pred eEEEEEccCCC----------ceEEEEEc-----------CCCC-------------------------EEEEecCCCeE
Q 020454 153 TVKSWNVCASG----------TIAFSKVD-----------ISEK-------------------------FSLFGGKGVEV 186 (326)
Q Consensus 153 ~~~~~~~~~~~----------~v~~~~~~-----------~~~~-------------------------~l~sg~~d~~i 186 (326)
+|++|+...+. -|+.++.+ |.++ .|++|+.|.++
T Consensus 269 tIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tl 348 (480)
T KOG0271|consen 269 TIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTL 348 (480)
T ss_pred eEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceE
Confidence 88888865421 25555554 3333 48888888888
Q ss_pred EEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEE
Q 020454 187 NVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVA 265 (326)
Q Consensus 187 ~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~ 265 (326)
.+|+... .+++.+..+|. .-|..+.|+| +++++|+++.|+.|++||.+++ +.+.+|.+|-.+|+.++
T Consensus 349 flW~p~~~kkpi~rmtgHq---------~lVn~V~fSP--d~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 349 FLWNPFKSKKPITRMTGHQ---------ALVNHVSFSP--DGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVA 416 (480)
T ss_pred EEecccccccchhhhhchh---------hheeeEEECC--CccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEE
Confidence 8888654 34666666655 4488999999 6789999999999999999998 67899999999999999
Q ss_pred ecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 266 ~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
|+.|.++|++|+.|.++++||+++.++...++|| .+.|.+++|+|||..+++||.|+..
T Consensus 417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh-~DEVf~vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH-ADEVFAVDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred eccCccEEEEcCCCceEEEEEeeeeeecccCCCC-CceEEEEEecCCCceeecCCCceEE
Confidence 9999999999999999999999999999999998 9999999999999999999999864
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.1e-42 Score=269.69 Aligned_cols=266 Identities=16% Similarity=0.147 Sum_probs=227.3
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..++||+-.|.+|||+.... .....+..+... +.++-|.+..++.-|++++.||++++|++.+...+..+.
T Consensus 188 ~~laT~swsG~~kvW~~~~~-----~~~~~l~gH~~~--v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~-- 258 (459)
T KOG0272|consen 188 KHLATGSWSGLVKVWSVPQC-----NLLQTLRGHTSR--VGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE-- 258 (459)
T ss_pred CeEEEeecCCceeEeecCCc-----ceeEEEeccccc--eeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh--
Confidence 77999999999999999876 444455544443 334444443334469999999999999998777666665
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
+|...|..+++.+ ++.+|.+++.|.+-++||++.... .+..-.|...|.+++|+|+|
T Consensus 259 ------gH~~RVs~VafHP--------sG~~L~TasfD~tWRlWD~~tk~E---------lL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 259 ------GHLARVSRVAFHP--------SGKFLGTASFDSTWRLWDLETKSE---------LLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred ------cchhhheeeeecC--------CCceeeecccccchhhcccccchh---------hHhhcccccccceeEecCCC
Confidence 5567888788765 778999999999999999886542 22333567789999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
.++++||.|..-+|||+++++++..+.+|. ..|.+|+|+| +|..+|+|+.|++++|||+|.- +++..+
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr~im~L~gH~---------k~I~~V~fsP--NGy~lATgs~Dnt~kVWDLR~r-~~ly~i 383 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGRCIMFLAGHI---------KEILSVAFSP--NGYHLATGSSDNTCKVWDLRMR-SELYTI 383 (459)
T ss_pred ceeeccCccchhheeecccCcEEEEecccc---------cceeeEeECC--CceEEeecCCCCcEEEeeeccc-ccceec
Confidence 999999999999999999999999998876 4578999999 6889999999999999999965 679999
Q ss_pred eecCCceEEEEecC-CCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 255 DFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 255 ~~~~~~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..|..-|+.|.|+| .|.+|++++.|++++||.-++..+++.+.|| ++.|.+++.+|++.+|+|+|.|++.
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH-e~kV~s~Dis~d~~~i~t~s~DRT~ 454 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH-EGKVISLDISPDSQAIATSSFDRTI 454 (459)
T ss_pred ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC-ccceEEEEeccCCceEEEeccCcee
Confidence 99999999999999 5889999999999999999999999999999 9999999999999999999999874
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.7e-38 Score=247.86 Aligned_cols=234 Identities=15% Similarity=0.173 Sum_probs=200.9
Q ss_pred EEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC
Q 020454 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (326)
Q Consensus 54 ~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g 133 (326)
+..+.+. .+++.|++|+-+|.+++|+..+...+..+. +|...+.++.+.+.. .+..+++|+.||
T Consensus 178 is~~~fS--~ds~~laT~swsG~~kvW~~~~~~~~~~l~--------gH~~~v~~~~fhP~~------~~~~lat~s~Dg 241 (459)
T KOG0272|consen 178 ISGCSFS--RDSKHLATGSWSGLVKVWSVPQCNLLQTLR--------GHTSRVGAAVFHPVD------SDLNLATASADG 241 (459)
T ss_pred ceeeEee--cCCCeEEEeecCCceeEeecCCcceeEEEe--------ccccceeeEEEccCC------CccceeeeccCC
Confidence 3344443 345589999999999999999887777766 777889888876521 356899999999
Q ss_pred cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCC
Q 020454 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (326)
Q Consensus 134 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 213 (326)
.+++|+++.... +.-+. .|...|..++|||+|++|+|++.|.+-++||++++..+....+|.
T Consensus 242 tvklw~~~~e~~--------l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs--------- 303 (459)
T KOG0272|consen 242 TVKLWKLSQETP--------LQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS--------- 303 (459)
T ss_pred ceeeeccCCCcc--------hhhhh-cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccc---------
Confidence 999999876432 21111 345689999999999999999999999999999998887777765
Q ss_pred CceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE
Q 020454 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293 (326)
Q Consensus 214 ~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~ 293 (326)
..|.+++|+| +|.++++|+.|..-+|||+|++ +++..+.+|..+|.+|+|+|+|..|++|+.|++++|||++..+.+
T Consensus 304 ~~v~~iaf~~--DGSL~~tGGlD~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 304 KGVFSIAFQP--DGSLAATGGLDSLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL 380 (459)
T ss_pred cccceeEecC--CCceeeccCccchhheeecccC-cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccc
Confidence 5588999998 6779999999999999999998 678999999999999999999999999999999999999999999
Q ss_pred EEEcceecceEEEEEECC-CCCEEEEeccCccC
Q 020454 294 GCFIGKCSGSIRSIARHP-TLPIIASCGFLEAA 325 (326)
Q Consensus 294 ~~~~~~~~~~v~~l~~~p-~~~~l~s~s~D~~~ 325 (326)
+.+++| ..-|+.+.|+| .|.+|+|||+|.++
T Consensus 381 y~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 381 YTIPAH-SNLVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred eecccc-cchhhheEecccCCeEEEEcccCcce
Confidence 999998 99999999998 78999999999876
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-37 Score=241.87 Aligned_cols=249 Identities=14% Similarity=0.207 Sum_probs=208.8
Q ss_pred CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE
Q 020454 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (326)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~ 127 (326)
+.+.+.++++.|.+ .+..|++|+.|-++|+||+.+.......+ .|...|.++++.+ ++..|+
T Consensus 112 ~GH~e~Vl~~~fsp--~g~~l~tGsGD~TvR~WD~~TeTp~~t~K--------gH~~WVlcvawsP--------Dgk~iA 173 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSP--TGSRLVTGSGDTTVRLWDLDTETPLFTCK--------GHKNWVLCVAWSP--------DGKKIA 173 (480)
T ss_pred CCCCCcEEEEEecC--CCceEEecCCCceEEeeccCCCCcceeec--------CCccEEEEEEECC--------Ccchhh
Confidence 45666777777765 55689999999999999998877666655 7789999999877 778999
Q ss_pred EEecCCcEEEEEcccccc-----------------------------ccccccceEEEEEccCC----------CceEEE
Q 020454 128 TCTTKGKASMRSIEVTKV-----------------------------SAESSCSTVKSWNVCAS----------GTIAFS 168 (326)
Q Consensus 128 ~~~~~g~v~i~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~----------~~v~~~ 168 (326)
+++.||.|.+||....+. ++.+.|+.+++|+.... .+|+|+
T Consensus 174 SG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCv 253 (480)
T KOG0271|consen 174 SGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCV 253 (480)
T ss_pred ccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEE
Confidence 999999999999665433 56678999999998653 357777
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe-----------ec-------------
Q 020454 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL-----------SI------------- 224 (326)
Q Consensus 169 ~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------p~------------- 224 (326)
.|-. ..+|++|+.|++|++|+...++....+++|. .||+.++.+ |.
T Consensus 254 rwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHa---------hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 254 RWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHA---------HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred EEcC-CceEEecCCCceEEEEEccchhHHHhhcccc---------hheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 7752 4789999999999999999988888887764 445555433 21
Q ss_pred ----------CCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEE
Q 020454 225 ----------DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG 294 (326)
Q Consensus 225 ----------~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~ 294 (326)
..+..|++|+.|.++.+|+....++|+..+.+|..-|+.+.||||+++|++++.|..|++||-++|+.+.
T Consensus 324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la 403 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLA 403 (480)
T ss_pred HHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhh
Confidence 1234699999999999999987778999999999999999999999999999999999999999999999
Q ss_pred EEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 295 CFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 295 ~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.|+|| .++|..++|+.|.++|++||.|.+.
T Consensus 404 sfRGH-v~~VYqvawsaDsRLlVS~SkDsTL 433 (480)
T KOG0271|consen 404 SFRGH-VAAVYQVAWSADSRLLVSGSKDSTL 433 (480)
T ss_pred hhhhc-cceeEEEEeccCccEEEEcCCCceE
Confidence 99999 9999999999999999999999763
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.8e-35 Score=223.86 Aligned_cols=266 Identities=15% Similarity=0.197 Sum_probs=217.0
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce--e-eee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--R-VAI 91 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~--~-~~~ 91 (326)
-++|++++||.+-|||.-+.+. + ... +-...=++++.+. ++++++|+|+.|+...||++.+.+. . ...
T Consensus 68 r~ivSaSqDGklIvWDs~TtnK----~-hai--pl~s~WVMtCA~s--PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~ 138 (343)
T KOG0286|consen 68 RRIVSASQDGKLIVWDSFTTNK----V-HAI--PLPSSWVMTCAYS--PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVS 138 (343)
T ss_pred CeEEeeccCCeEEEEEcccccc----e-eEE--ecCceeEEEEEEC--CCCCeEEecCcCceeEEEecccccccccceee
Confidence 6799999999999999876611 1 111 2334445556554 5566899999999999999974421 1 111
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 171 (326)
+. ...|.+.+.+..+. +++.|++++.|.+..+||++... .+..+. .|.+.|.+++++
T Consensus 139 r~-----l~gHtgylScC~f~---------dD~~ilT~SGD~TCalWDie~g~--------~~~~f~-GH~gDV~slsl~ 195 (343)
T KOG0286|consen 139 RE-----LAGHTGYLSCCRFL---------DDNHILTGSGDMTCALWDIETGQ--------QTQVFH-GHTGDVMSLSLS 195 (343)
T ss_pred ee-----ecCccceeEEEEEc---------CCCceEecCCCceEEEEEcccce--------EEEEec-CCcccEEEEecC
Confidence 11 12777888877764 46789999999999999998755 455555 567899999999
Q ss_pred C-CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 020454 172 I-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (326)
Q Consensus 172 ~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~ 250 (326)
| +++.+++|+-|+..++||++.+..+..+.+|. ..|+++.|.| +|.-|++|+.|++.|+||+|.. +.
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe---------sDINsv~ffP--~G~afatGSDD~tcRlyDlRaD-~~ 263 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE---------SDINSVRFFP--SGDAFATGSDDATCRLYDLRAD-QE 263 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcceeEeecccc---------cccceEEEcc--CCCeeeecCCCceeEEEeecCC-cE
Confidence 9 88999999999999999999999999888876 4578999999 5668999999999999999986 44
Q ss_pred eeEEe--ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 251 VMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 251 ~~~~~--~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+..+. ....+|++++||..|++|++|..|.++.+||.-.++.+..+.+| +++|.+|..+|||.-|+|||.|...
T Consensus 264 ~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH-eNRvScl~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 264 LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH-ENRVSCLGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc-CCeeEEEEECCCCcEEEecchhHhe
Confidence 55554 34468999999999999999999999999999999999999998 9999999999999999999999765
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.8e-35 Score=216.13 Aligned_cols=269 Identities=13% Similarity=0.119 Sum_probs=212.8
Q ss_pred CCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (326)
Q Consensus 13 ~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~ 92 (326)
++.-|++++.|-+||+|.+.++ +-..++..++..+..+ ....+ .+.|| +...-.||+||+.+++... ..
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG-----~C~rTiqh~dsqVNrL--eiTpd--k~~LA-aa~~qhvRlyD~~S~np~P-v~ 77 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTG-----ICSRTIQHPDSQVNRL--EITPD--KKDLA-AAGNQHVRLYDLNSNNPNP-VA 77 (311)
T ss_pred CceEEEeccCcceeeeeehhcC-----eEEEEEecCccceeeE--EEcCC--cchhh-hccCCeeEEEEccCCCCCc-ee
Confidence 7799999999999999999998 5555666555555544 33322 33444 4555889999998776532 22
Q ss_pred ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (326)
Q Consensus 93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (326)
.+ ..+.+.|..+.|-. ++..++++++||.++|||++... .-+.++ +..+|+++..||
T Consensus 78 t~-----e~h~kNVtaVgF~~--------dgrWMyTgseDgt~kIWdlR~~~--------~qR~~~--~~spVn~vvlhp 134 (311)
T KOG0315|consen 78 TF-----EGHTKNVTAVGFQC--------DGRWMYTGSEDGTVKIWDLRSLS--------CQRNYQ--HNSPVNTVVLHP 134 (311)
T ss_pred EE-----eccCCceEEEEEee--------cCeEEEecCCCceEEEEeccCcc--------cchhcc--CCCCcceEEecC
Confidence 22 15567788777654 66789999999999999988633 334444 357999999999
Q ss_pred CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC-----
Q 020454 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----- 247 (326)
Q Consensus 173 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~----- 247 (326)
+...|++|..+|.|++||+........+-... ...|.++...| +|.+++.+..-|..++|++-..
T Consensus 135 nQteLis~dqsg~irvWDl~~~~c~~~liPe~--------~~~i~sl~v~~--dgsml~a~nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGENSCTHELIPED--------DTSIQSLTVMP--DGSMLAAANNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred CcceEEeecCCCcEEEEEccCCccccccCCCC--------CcceeeEEEcC--CCcEEEEecCCccEEEEEccCCCcccc
Confidence 99999999999999999998765544433222 14588888888 6779999999999999997642
Q ss_pred CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 248 ~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
-.|+.+++.|+..+....+||++++|++++.|.+++||+..+. +....+.+| ...++..+|+.+++||+|+|.|+.|+
T Consensus 205 l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 205 LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGEYLVTASSDHTAR 283 (311)
T ss_pred ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC-CceEEeeeeccCccEEEecCCCCcee
Confidence 2477888999999999999999999999999999999999987 556678898 99999999999999999999998764
No 7
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.1e-36 Score=236.86 Aligned_cols=264 Identities=16% Similarity=0.169 Sum_probs=215.2
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
=||++|++.|..-+|+.... .+..-...+...+-++.| +.++.++++|..+|.|++|+..-..+ ..+..
T Consensus 109 RRLltgs~SGEFtLWNg~~f-------nFEtilQaHDs~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~a- 177 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLWNGTSF-------NFETILQAHDSPVRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNV-KIIQA- 177 (464)
T ss_pred ceeEeecccccEEEecCcee-------eHHHHhhhhcccceeEEE--ccCCCEEEEcCCCceEEecccchhhh-HHhhH-
Confidence 57999999999999998643 112112334444445555 45566999999999999999864444 44442
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.+...|+++++.+ .+..+++|+.||.|+|||....... ++. ..++-.|.+++|||..
T Consensus 178 ------hh~eaIRdlafSp--------nDskF~t~SdDg~ikiWdf~~~kee--------~vL-~GHgwdVksvdWHP~k 234 (464)
T KOG0284|consen 178 ------HHAEAIRDLAFSP--------NDSKFLTCSDDGTIKIWDFRMPKEE--------RVL-RGHGWDVKSVDWHPTK 234 (464)
T ss_pred ------hhhhhhheeccCC--------CCceeEEecCCCeEEEEeccCCchh--------hee-ccCCCCcceeccCCcc
Confidence 4447899999866 6789999999999999997654321 111 2456679999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
.+|++|++|+.|++||.++++++.++..|+ ..|.++.|.|+ +++|++++.|..+++||+|+. +.+..+
T Consensus 235 gLiasgskDnlVKlWDprSg~cl~tlh~HK---------ntVl~~~f~~n--~N~Llt~skD~~~kv~DiR~m-kEl~~~ 302 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGSCLATLHGHK---------NTVLAVKFNPN--GNWLLTGSKDQSCKVFDIRTM-KELFTY 302 (464)
T ss_pred ceeEEccCCceeEeecCCCcchhhhhhhcc---------ceEEEEEEcCC--CCeeEEccCCceEEEEehhHh-HHHHHh
Confidence 999999999999999999999999988876 55889999985 469999999999999999976 568899
Q ss_pred eecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEc-ceecceEEEEEECCCCCEEEEeccCccC
Q 020454 255 DFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 255 ~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
++|+..+++++|+|- ..+|.+|+.||.|..|.+...+++..+. +| .+.|++++|+|-|.+|++|+.|+.+
T Consensus 303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AH-d~~iwsl~~hPlGhil~tgsnd~t~ 374 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAH-DGEIWSLAYHPLGHILATGSNDRTV 374 (464)
T ss_pred hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCccc-ccceeeeeccccceeEeecCCCcce
Confidence 999999999999996 5677799999999999998777776665 56 9999999999999999999999875
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.4e-34 Score=228.75 Aligned_cols=264 Identities=13% Similarity=0.215 Sum_probs=218.3
Q ss_pred CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (326)
Q Consensus 14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~ 93 (326)
.-.|++|.++|.+|+|+..+. +...++.+.. .++++ -|+..+.||++++.||++.+||..+++....+..
T Consensus 247 G~~LatG~~~G~~riw~~~G~------l~~tl~~Hkg--PI~sl--KWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNKDGN------LISTLGQHKG--PIFSL--KWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred CCeEEEeecCcEEEEEecCch------hhhhhhccCC--ceEEE--EEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence 367999999999999999876 4445554433 34444 5567788999999999999999988888777664
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (326)
+..+-..+.|. .+..+++++.||.|+++.+.... +++.+.- |.++|.++.|+|.
T Consensus 317 --------~s~~~lDVdW~---------~~~~F~ts~td~~i~V~kv~~~~--------P~~t~~G-H~g~V~alk~n~t 370 (524)
T KOG0273|consen 317 --------HSAPALDVDWQ---------SNDEFATSSTDGCIHVCKVGEDR--------PVKTFIG-HHGEVNALKWNPT 370 (524)
T ss_pred --------ccCCccceEEe---------cCceEeecCCCceEEEEEecCCC--------cceeeec-ccCceEEEEECCC
Confidence 22332334443 45689999999999999977544 5666654 7889999999999
Q ss_pred CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC-------CCcEEEEEeCCCeEEEEeCCC
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-------DHRKFVAGTNDHQVRLYDTSA 246 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-------~~~~l~~~~~dg~v~iwd~~~ 246 (326)
+.+|++++.|++++||..........++.|.++ |+.+.|+|.. .+..+++++.|++|++||+..
T Consensus 371 g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske---------i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~ 441 (524)
T KOG0273|consen 371 GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE---------IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES 441 (524)
T ss_pred CceEEEecCCCeeEeeecCCCcchhhhhhhccc---------eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence 999999999999999999888777777776644 5566776642 345899999999999999998
Q ss_pred CCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 247 ~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+ .+++.|..|..+|++++|+|+|+++++|+.||.|.+|+.+++++.+.+.+ .+.|..|.|+-+|..|..+-.|+.+
T Consensus 442 g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~--~~~Ifel~Wn~~G~kl~~~~sd~~v 517 (524)
T KOG0273|consen 442 G-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG--TGGIFELCWNAAGDKLGACASDGSV 517 (524)
T ss_pred C-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC--CCeEEEEEEcCCCCEEEEEecCCCc
Confidence 8 78999999999999999999999999999999999999999999999996 6779999999999999988888765
No 9
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-34 Score=223.80 Aligned_cols=267 Identities=12% Similarity=0.156 Sum_probs=212.3
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..++++++++.|++||..++ .+..... .+...+..+++. ..+++|++++.|=.+++||..+- + ..++..
T Consensus 121 ~~v~~as~d~tikv~D~~tg-----~~e~~Lr--GHt~sv~di~~~--a~Gk~l~tcSsDl~~~LWd~~~~-~-~c~ks~ 189 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTETG-----ELERSLR--GHTDSVFDISFD--ASGKYLATCSSDLSAKLWDFDTF-F-RCIKSL 189 (406)
T ss_pred eEEEEecCCceEEEEEccch-----hhhhhhh--ccccceeEEEEe--cCccEEEecCCccchhheeHHHH-H-HHHHHh
Confidence 44677889999999999988 4432232 333335555554 45579999999999999998642 1 222221
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
..++..|.+..+.+ .++++++++.|.+|+.|+++... .++.+. .+.+-|..++.+.||
T Consensus 190 -----~gh~h~vS~V~f~P--------~gd~ilS~srD~tik~We~~tg~--------cv~t~~-~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 190 -----IGHEHGVSSVFFLP--------LGDHILSCSRDNTIKAWECDTGY--------CVKTFP-GHSEWVRMVRVNQDG 247 (406)
T ss_pred -----cCcccceeeEEEEe--------cCCeeeecccccceeEEecccce--------eEEecc-CchHhEEEEEecCCe
Confidence 15556788788777 56899999999999999987654 444444 345578999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec-------------CCCcEEEEEeCCCeEEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI-------------DDHRKFVAGTNDHQVRL 241 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-------------~~~~~l~~~~~dg~v~i 241 (326)
.++|+++.|.+|++|-+.++++...+..|. -.|.+++|.|. +.+.++.+++.|++|++
T Consensus 248 ti~As~s~dqtl~vW~~~t~~~k~~lR~hE---------h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 248 TIIASCSNDQTLRVWVVATKQCKAELREHE---------HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred eEEEecCCCceEEEEEeccchhhhhhhccc---------cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence 999999999999999999886655544443 23445555442 22358999999999999
Q ss_pred EeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454 242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
||+.++ .++.++.+|...|..++|+|.|+||+++.+|+++++||++++++...+..| ..-|++++|+.+.++++|||.
T Consensus 319 wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah-~hfvt~lDfh~~~p~VvTGsV 396 (406)
T KOG0295|consen 319 WDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH-EHFVTSLDFHKTAPYVVTGSV 396 (406)
T ss_pred EeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC-cceeEEEecCCCCceEEeccc
Confidence 999998 789999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CccC
Q 020454 322 LEAA 325 (326)
Q Consensus 322 D~~~ 325 (326)
|-.+
T Consensus 397 dqt~ 400 (406)
T KOG0295|consen 397 DQTV 400 (406)
T ss_pred ccee
Confidence 8654
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.2e-35 Score=249.46 Aligned_cols=195 Identities=17% Similarity=0.237 Sum_probs=177.7
Q ss_pred CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEe
Q 020454 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180 (326)
Q Consensus 101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 180 (326)
+|.++|.+..+.+ +.++|++|++|+++++|++.... .+-.+. .|..+|..+.|+|.|-||||+
T Consensus 449 GH~GPVyg~sFsP--------d~rfLlScSED~svRLWsl~t~s--------~~V~y~-GH~~PVwdV~F~P~GyYFata 511 (707)
T KOG0263|consen 449 GHSGPVYGCSFSP--------DRRFLLSCSEDSSVRLWSLDTWS--------CLVIYK-GHLAPVWDVQFAPRGYYFATA 511 (707)
T ss_pred cCCCceeeeeecc--------cccceeeccCCcceeeeecccce--------eEEEec-CCCcceeeEEecCCceEEEec
Confidence 7889999999877 67899999999999999988755 455555 567899999999999999999
Q ss_pred cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCc
Q 020454 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (326)
Q Consensus 181 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 260 (326)
+.|++.++|......++..+.+|. ..|.++.|+|+ .+++++||.|.+||+||..++ ..++.|.+|.++
T Consensus 512 s~D~tArLWs~d~~~PlRifaghl---------sDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~ 579 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNKPLRIFAGHL---------SDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGP 579 (707)
T ss_pred CCCceeeeeecccCCchhhhcccc---------cccceEEECCc--ccccccCCCCceEEEEEcCCC-cEEEEecCCCCc
Confidence 999999999999888888777765 44779999995 459999999999999999988 569999999999
Q ss_pred eEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 261 i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
|++++|||+|++|++|+.||.|.+||+.+++++..+.+| .+.|.+|.|+.+|.+||+||.|..+
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSV 643 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeE
Confidence 999999999999999999999999999999999999999 9999999999999999999999875
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-32 Score=207.11 Aligned_cols=269 Identities=9% Similarity=0.055 Sum_probs=207.0
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
--+++++.|-.+-+|++...+...-....++..+++...-+++ ++++++.++++.|+++++||+.+++....+.
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~----s~dg~~alS~swD~~lrlWDl~~g~~t~~f~-- 102 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVL----SSDGNFALSASWDGTLRLWDLATGESTRRFV-- 102 (315)
T ss_pred ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEE----ccCCceEEeccccceEEEEEecCCcEEEEEE--
Confidence 4578899999999999987644433444455554443332322 3456689999999999999999987766665
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC-
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 173 (326)
.|..-|.++++.+ ++..+++++.|.++.+|+.-... ...+-+..+.+-|.|+.|+|+
T Consensus 103 ------GH~~dVlsva~s~--------dn~qivSGSrDkTiklwnt~g~c--------k~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 103 ------GHTKDVLSVAFST--------DNRQIVSGSRDKTIKLWNTLGVC--------KYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ------ecCCceEEEEecC--------CCceeecCCCcceeeeeeecccE--------EEEEecCCCcCcEEEEEEcCCC
Confidence 6668899898765 67799999999999999965433 233333323567999999998
Q ss_pred -CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454 174 -EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (326)
Q Consensus 174 -~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 252 (326)
..+|++++.|+++++||+++.+......+|. ..++.++++| ||.++++|+.||.+.+||++.+ +.+.
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~---------~~v~t~~vSp--DGslcasGgkdg~~~LwdL~~~-k~ly 228 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS---------GYVNTVTVSP--DGSLCASGGKDGEAMLWDLNEG-KNLY 228 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhcccccc---------ccEEEEEECC--CCCEEecCCCCceEEEEEccCC-ceeE
Confidence 5899999999999999999988777665544 6799999998 7789999999999999999987 5566
Q ss_pred EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEccee--------cceEEEEEECCCCCEEEEeccCcc
Q 020454 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--------SGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 253 ~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~--------~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
++ .+...|.+++|+|+.-.|+.+. +-.|+|||+.+++++..++... .-...+++|+++|..|++|=.|+.
T Consensus 229 sl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 229 SL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred ec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 66 4558999999999876665554 4469999999988776654211 113457899999999999988876
Q ss_pred C
Q 020454 325 A 325 (326)
Q Consensus 325 ~ 325 (326)
+
T Consensus 307 i 307 (315)
T KOG0279|consen 307 I 307 (315)
T ss_pred E
Confidence 5
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.3e-33 Score=210.54 Aligned_cols=266 Identities=17% Similarity=0.186 Sum_probs=213.5
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++|+.|-.|.+|++...... .|.-+.++..++.+-+. .+++.+++++.|.+|+.||.++|+....++
T Consensus 60 s~~aSgG~Dr~I~LWnv~gdceN------~~~lkgHsgAVM~l~~~--~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k-- 129 (338)
T KOG0265|consen 60 SCFASGGSDRAIVLWNVYGDCEN------FWVLKGHSGAVMELHGM--RDGSHILSCGTDKTVRGWDAETGKRIRKHK-- 129 (338)
T ss_pred CeEeecCCcceEEEEeccccccc------eeeeccccceeEeeeec--cCCCEEEEecCCceEEEEecccceeeehhc--
Confidence 46899999999999998765111 22234666777666554 455589999999999999999999877766
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.|.+-+..+..... ....+.+++.||++++||++.++ .++.+. .+-+++++.|..++
T Consensus 130 ------~h~~~vNs~~p~rr-------g~~lv~SgsdD~t~kl~D~R~k~--------~~~t~~--~kyqltAv~f~d~s 186 (338)
T KOG0265|consen 130 ------GHTSFVNSLDPSRR-------GPQLVCSGSDDGTLKLWDIRKKE--------AIKTFE--NKYQLTAVGFKDTS 186 (338)
T ss_pred ------cccceeeecCcccc-------CCeEEEecCCCceEEEEeecccc--------hhhccc--cceeEEEEEecccc
Confidence 44455555553221 23467888999999999998765 333332 24579999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC---CCce
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---RRPV 251 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~---~~~~ 251 (326)
..+.+|+-|+.|++||++.+..++.+++|. ..|+.+..+| +|..+.+-+.|.++++||+|.. .+++
T Consensus 187 ~qv~sggIdn~ikvWd~r~~d~~~~lsGh~---------DtIt~lsls~--~gs~llsnsMd~tvrvwd~rp~~p~~R~v 255 (338)
T KOG0265|consen 187 DQVISGGIDNDIKVWDLRKNDGLYTLSGHA---------DTITGLSLSR--YGSFLLSNSMDNTVRVWDVRPFAPSQRCV 255 (338)
T ss_pred cceeeccccCceeeeccccCcceEEeeccc---------CceeeEEecc--CCCccccccccceEEEEEecccCCCCceE
Confidence 999999999999999999999999999976 5688999988 5669999999999999998853 2345
Q ss_pred eEEeecCC----ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 252 MSFDFRET----PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 252 ~~~~~~~~----~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..+.++.. .....+|+|+++++.+|+.|..+++||......++.++|| .+.|++++|+|..++|.+|+.|+++
T Consensus 256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh-~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH-YGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred EEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc-ceeEEEeeecCCCcEEEEeccCcee
Confidence 56665422 3345689999999999999999999999999999999999 9999999999999999999999874
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-32 Score=205.59 Aligned_cols=235 Identities=12% Similarity=0.152 Sum_probs=188.5
Q ss_pred CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc-----ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCC
Q 020454 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-----DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (326)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 123 (326)
.+..-+.+...... ....+++++.|.++.+|++... ..++.+. +|+..|..+.... ++
T Consensus 13 gh~d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~--------GHsH~v~dv~~s~--------dg 75 (315)
T KOG0279|consen 13 GHTDWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT--------GHSHFVSDVVLSS--------DG 75 (315)
T ss_pred CCCceEEEEEeecC-CCceEEEcccceEEEEEEeccCccccCceeeeee--------ccceEecceEEcc--------CC
Confidence 34444445554443 3447999999999999988533 2333333 5667777777655 77
Q ss_pred ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCC
Q 020454 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (326)
Q Consensus 124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~ 203 (326)
++.++++.|+.+++||+.... +.+.+. .|...|.+++++++.+.+++|+.|++|++|++........ ...
T Consensus 76 ~~alS~swD~~lrlWDl~~g~--------~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~-~~~ 145 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGE--------STRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTI-HED 145 (315)
T ss_pred ceEEeccccceEEEEEecCCc--------EEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEE-ecC
Confidence 899999999999999987643 344444 4577899999999999999999999999999875544333 322
Q ss_pred CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEE
Q 020454 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (326)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~ 283 (326)
. +..||+++.|+|+.+..+|++++.|++|++||+++. +....+.+|.+.++.+++||||...++|+.||.+.
T Consensus 146 ~-------~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~ 217 (315)
T KOG0279|consen 146 S-------HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAM 217 (315)
T ss_pred C-------CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEE
Confidence 1 137899999999876679999999999999999987 66788889999999999999999999999999999
Q ss_pred EEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
+||++.++.++.+. | ...|.+++|+|+...|+.+-
T Consensus 218 LwdL~~~k~lysl~-a-~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 218 LWDLNEGKNLYSLE-A-FDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred EEEccCCceeEecc-C-CCeEeeEEecCCceeEeecc
Confidence 99999999998887 3 88999999999987776653
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-31 Score=216.16 Aligned_cols=289 Identities=16% Similarity=0.165 Sum_probs=215.8
Q ss_pred CCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (326)
Q Consensus 13 ~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~ 92 (326)
-|+|++||++|+.|-+|+-... |...++.++.. -+.++.+. +++.++++.+.||.|.+||-.+++.+..+.
T Consensus 159 RPfRi~T~sdDn~v~ffeGPPF-----KFk~s~r~Hsk--FV~~VRys--PDG~~Fat~gsDgki~iyDGktge~vg~l~ 229 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGPPF-----KFKSSFREHSK--FVNCVRYS--PDGSRFATAGSDGKIYIYDGKTGEKVGELE 229 (603)
T ss_pred CceEEEeccCCCeEEEeeCCCe-----eeeeccccccc--ceeeEEEC--CCCCeEEEecCCccEEEEcCCCccEEEEec
Confidence 3599999999999999997765 66555555444 44444443 446689999999999999999999988887
Q ss_pred ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc------------------------cc
Q 020454 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS------------------------AE 148 (326)
Q Consensus 93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~------------------------~~ 148 (326)
. ...|.+.|.++.|.+ +...+++++.|.++++||+...... +-
T Consensus 230 ~-----~~aHkGsIfalsWsP--------Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItV 296 (603)
T KOG0318|consen 230 D-----SDAHKGSIFALSWSP--------DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITV 296 (603)
T ss_pred C-----CCCccccEEEEEECC--------CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEE
Confidence 4 247889999999877 7789999999999999998875431 11
Q ss_pred cccceEEEEEcc----------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceee-----------eeecCCC---
Q 020454 149 SSCSTVKSWNVC----------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-----------WTAKPPP--- 204 (326)
Q Consensus 149 ~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~-----------~~~~~~~--- 204 (326)
+-.+.+..++.. |...|+++..++++++|++|+.||.|.-||..++..- ..+....
T Consensus 297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~ 376 (603)
T KOG0318|consen 297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE 376 (603)
T ss_pred EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence 122333333332 2345999999999999999999999999999865210 0000000
Q ss_pred ---------------------CC----------CC------------------CcC---------CCCceeeeEEeecCC
Q 020454 205 ---------------------KN----------SL------------------GIF---------TPTWFTSAAFLSIDD 226 (326)
Q Consensus 205 ---------------------~~----------~~------------------~~~---------~~~~v~~~~~~p~~~ 226 (326)
.. .+ -++ ..-...+++++| +
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~--~ 454 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP--D 454 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC--C
Confidence 00 00 000 001234566777 5
Q ss_pred CcEEEEEeCCCeEEEEeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEE
Q 020454 227 HRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (326)
Q Consensus 227 ~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 305 (326)
+..+++|+.|+.|++|.+.... ........|..+|++++||||+.||++|+..+.+.+||+.+.+......+.|...|.
T Consensus 455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~ 534 (603)
T KOG0318|consen 455 GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN 534 (603)
T ss_pred CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEE
Confidence 6699999999999999998642 233455678899999999999999999999999999999998875444443399999
Q ss_pred EEEECCCCCEEEEeccCccC
Q 020454 306 SIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 306 ~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++|+|++..+||||.|-.+
T Consensus 535 ~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 535 CVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred EEEeCCCceEEEeccccceE
Confidence 99999999999999999653
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=228.33 Aligned_cols=229 Identities=15% Similarity=0.165 Sum_probs=198.0
Q ss_pred eeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEE
Q 020454 59 IDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR 138 (326)
Q Consensus 59 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~ 138 (326)
..|.++++.|++|+..|.+.+|+...-.+... .|.|+.+|.++.+.. ++..++++..+|.|++|
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti--------lQaHDs~Vr~m~ws~--------~g~wmiSgD~gG~iKyW 165 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI--------LQAHDSPVRTMKWSH--------NGTWMISGDKGGMIKYW 165 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCceeeHHHH--------hhhhcccceeEEEcc--------CCCEEEEcCCCceEEec
Confidence 35677788999999999999999843332111 147889999999876 67899999999999999
Q ss_pred EccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceee
Q 020454 139 SIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS 218 (326)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (326)
+.+.+. +++....+...|++++|+|+...|++++.|++|+|||....+....+.+|.- .|.+
T Consensus 166 qpnmnn---------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgw---------dVks 227 (464)
T KOG0284|consen 166 QPNMNN---------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGW---------DVKS 227 (464)
T ss_pred ccchhh---------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCC---------Ccce
Confidence 977653 4555556668999999999999999999999999999998887777777653 4789
Q ss_pred eEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (326)
Q Consensus 219 ~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 298 (326)
+.|+|... ++++++.|..|++||.+++ .++.++..|...|..+.|+|++++|++++.|..+++||+++.+.+..+++
T Consensus 228 vdWHP~kg--LiasgskDnlVKlWDprSg-~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~ 304 (464)
T KOG0284|consen 228 VDWHPTKG--LIASGSKDNLVKLWDPRSG-SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG 304 (464)
T ss_pred eccCCccc--eeEEccCCceeEeecCCCc-chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc
Confidence 99999743 9999999999999999998 78999999999999999999999999999999999999999999999999
Q ss_pred eecceEEEEEECC-CCCEEEEeccCccC
Q 020454 299 KCSGSIRSIARHP-TLPIIASCGFLEAA 325 (326)
Q Consensus 299 ~~~~~v~~l~~~p-~~~~l~s~s~D~~~ 325 (326)
| ...|+++.|+| ...++.+||.||.+
T Consensus 305 H-kkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 305 H-KKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred c-hhhheeeccccccccceeeccCCCce
Confidence 8 99999999999 55689999999864
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-32 Score=229.69 Aligned_cols=273 Identities=12% Similarity=0.143 Sum_probs=225.8
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
.++++...+-.+-++|.+.. ++...+- .....+..+++... ..++|++++..+.+|+|+..+.... .+.
T Consensus 294 ~~~l~vtaeQnl~l~d~~~l-----~i~k~iv--G~ndEI~Dm~~lG~-e~~~laVATNs~~lr~y~~~~~~c~-ii~-- 362 (775)
T KOG0319|consen 294 SQLLLVTAEQNLFLYDEDEL-----TIVKQIV--GYNDEILDMKFLGP-EESHLAVATNSPELRLYTLPTSYCQ-IIP-- 362 (775)
T ss_pred CceEEEEccceEEEEEcccc-----EEehhhc--CCchhheeeeecCC-ccceEEEEeCCCceEEEecCCCceE-EEe--
Confidence 34555556667888877755 3433332 23344556666433 4458999999999999988665543 222
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc----------------------------c
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----------------------------S 146 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~----------------------------~ 146 (326)
+|+..|.++..+. .+..|++|+.|.++++|.++.... +
T Consensus 363 ------GH~e~vlSL~~~~--------~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffv 428 (775)
T KOG0319|consen 363 ------GHTEAVLSLDVWS--------SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFV 428 (775)
T ss_pred ------Cchhheeeeeecc--------cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEE
Confidence 7778898888554 445899999999999999844322 5
Q ss_pred cccccceEEEEEccC-------------------CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCC
Q 020454 147 AESSCSTVKSWNVCA-------------------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (326)
Q Consensus 147 ~~~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~ 207 (326)
+.+.|.++++|.+.. ...|++++++|+.+++|||+.|.+.+||+++..+....+++|+
T Consensus 429 svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~--- 505 (775)
T KOG0319|consen 429 SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT--- 505 (775)
T ss_pred EecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCc---
Confidence 677899999999865 2359999999999999999999999999999999999999987
Q ss_pred CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (326)
Q Consensus 208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~ 287 (326)
..|-++.|+|. .+.++++|.|++|+||.+.+. .++++|.+|...|..+.|-.+|.+|++++.||.|++|++
T Consensus 506 ------RGvw~V~Fs~~--dq~laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 506 ------RGVWCVSFSKN--DQLLATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred ------cceEEEEeccc--cceeEeccCCceEEEEEeccc-eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 44679999985 349999999999999999988 789999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 288 RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 288 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
++++++.++.+| .+.|++++.+|....++|||.||.+
T Consensus 577 kt~eC~~tlD~H-~DrvWaL~~~~~~~~~~tgg~Dg~i 613 (775)
T KOG0319|consen 577 KTNECEMTLDAH-NDRVWALSVSPLLDMFVTGGGDGRI 613 (775)
T ss_pred cchhhhhhhhhc-cceeEEEeecCccceeEecCCCeEE
Confidence 999999999998 9999999999999999999999864
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7e-32 Score=200.20 Aligned_cols=259 Identities=11% Similarity=0.097 Sum_probs=194.6
Q ss_pred CCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (326)
Q Consensus 13 ~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~ 92 (326)
|.-+.+++.-.-.||+||+++. ...+. ..|. .+...+.+++|.. .++++++|+.||+++|||++.-...+.+.
T Consensus 50 pdk~~LAaa~~qhvRlyD~~S~-np~Pv--~t~e--~h~kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~~~qR~~~ 122 (311)
T KOG0315|consen 50 PDKKDLAAAGNQHVRLYDLNSN-NPNPV--ATFE--GHTKNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ 122 (311)
T ss_pred CCcchhhhccCCeeEEEEccCC-CCCce--eEEe--ccCCceEEEEEee--cCeEEEecCCCceEEEEeccCcccchhcc
Confidence 3345666667778999999987 22232 2444 3345566677653 45699999999999999998755544444
Q ss_pred ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (326)
Q Consensus 93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (326)
. ..+|..+...+ +...|+++..+|.|++||+..... .+..-......|.++.+.|
T Consensus 123 ~---------~spVn~vvlhp--------nQteLis~dqsg~irvWDl~~~~c--------~~~liPe~~~~i~sl~v~~ 177 (311)
T KOG0315|consen 123 H---------NSPVNTVVLHP--------NQTELISGDQSGNIRVWDLGENSC--------THELIPEDDTSIQSLTVMP 177 (311)
T ss_pred C---------CCCcceEEecC--------CcceEEeecCCCcEEEEEccCCcc--------ccccCCCCCcceeeEEEcC
Confidence 3 36788777665 456899999999999999876532 1222233456899999999
Q ss_pred CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (326)
Q Consensus 173 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 252 (326)
+|.+|+.+...|...+|++-+......+....+ --.+...+..+.++| ++++|++++.|.+++||+....-+...
T Consensus 178 dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k---~~ah~~~il~C~lSP--d~k~lat~ssdktv~iwn~~~~~kle~ 252 (311)
T KOG0315|consen 178 DGSMLAAANNKGNCYVWRLLNHQTASELEPVHK---FQAHNGHILRCLLSP--DVKYLATCSSDKTVKIWNTDDFFKLEL 252 (311)
T ss_pred CCcEEEEecCCccEEEEEccCCCccccceEhhh---eecccceEEEEEECC--CCcEEEeecCCceEEEEecCCceeeEE
Confidence 999999999999999999976432222211110 011346788889998 678999999999999999987644456
Q ss_pred EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEE
Q 020454 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (326)
Q Consensus 253 ~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~ 309 (326)
.+++|+..+...+||.||+||++|+.|+.+++||++.++.+..+.+| ..+..+++.
T Consensus 253 ~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh-~K~~vc~~l 308 (311)
T KOG0315|consen 253 VLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH-HKAAVCVAL 308 (311)
T ss_pred EeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc-ccccEEEEe
Confidence 77889999999999999999999999999999999999999999999 444445554
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4e-32 Score=228.94 Aligned_cols=291 Identities=14% Similarity=0.108 Sum_probs=205.9
Q ss_pred ccCCCCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc
Q 020454 6 TLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (326)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~ 85 (326)
+.+..+|. ..+.+|+.||.++|||+..+ .....+. .++..+.++.|.+.....+|++|..|++|++||+++.
T Consensus 110 ~ma~~~~g-~LlAtggaD~~v~VWdi~~~-----~~th~fk--G~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~ 181 (775)
T KOG0319|consen 110 TMAFDPTG-TLLATGGADGRVKVWDIKNG-----YCTHSFK--GHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK 181 (775)
T ss_pred EEEEcCCC-ceEEeccccceEEEEEeeCC-----EEEEEec--CCCceEEEEEeCCccchhheeecCCCceEEEEEcccC
Confidence 33444444 77899999999999999987 4545555 4455556677776666678999999999999999755
Q ss_pred ce-eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc-------------------
Q 020454 86 DL-RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------- 145 (326)
Q Consensus 86 ~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~------------------- 145 (326)
.. +..+. .|...++++.+.+ ++..+++++.|..+.+||+.....
T Consensus 182 ~tcl~~~~--------~H~S~vtsL~~~~--------d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~ 245 (775)
T KOG0319|consen 182 RTCLHTMI--------LHKSAVTSLAFSE--------DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREE 245 (775)
T ss_pred chHHHHHH--------hhhhheeeeeecc--------CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechh
Confidence 43 22222 4557788887655 556777777777777777643221
Q ss_pred --------ccccccceEEEEEccCC-------------------------------------------------------
Q 020454 146 --------SAESSCSTVKSWNVCAS------------------------------------------------------- 162 (326)
Q Consensus 146 --------~~~~~~~~~~~~~~~~~------------------------------------------------------- 162 (326)
.+.+..+.++.|+....
T Consensus 246 ~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndE 325 (775)
T KOG0319|consen 246 LGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDE 325 (775)
T ss_pred cCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchh
Confidence 00111222222222110
Q ss_pred ----------------------------------------CceEEEEEcCCCCEEEEecCCCeEEEEECCCce-------
Q 020454 163 ----------------------------------------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE------- 195 (326)
Q Consensus 163 ----------------------------------------~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~------- 195 (326)
+.|.+++...+|.+|++|++|+++++|.++++.
T Consensus 326 I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a 405 (775)
T KOG0319|consen 326 ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA 405 (775)
T ss_pred heeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence 014445433455566666666666666653220
Q ss_pred -------------------------------eeeeecC--CCC--C-----CCCcCCCCceeeeEEeecCCCcEEEEEeC
Q 020454 196 -------------------------------KIWTAKP--PPK--N-----SLGIFTPTWFTSAAFLSIDDHRKFVAGTN 235 (326)
Q Consensus 196 -------------------------------~~~~~~~--~~~--~-----~~~~~~~~~v~~~~~~p~~~~~~l~~~~~ 235 (326)
.++.+.. ... . .....|...|++++.+|+ .+++++||.
T Consensus 406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n--dkLiAT~Sq 483 (775)
T KOG0319|consen 406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN--DKLIATGSQ 483 (775)
T ss_pred hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC--CceEEeccc
Confidence 0111110 000 0 011235678999999995 449999999
Q ss_pred CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCE
Q 020454 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI 315 (326)
Q Consensus 236 dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 315 (326)
|++.+||++... +....+.+|...+.+|.|+|..+.++++|.|++|+||.+.+..++++|.|| ...|....|-.++..
T Consensus 484 DktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH-~~aVlra~F~~~~~q 561 (775)
T KOG0319|consen 484 DKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH-TSAVLRASFIRNGKQ 561 (775)
T ss_pred ccceeeecccCc-eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc-cceeEeeeeeeCCcE
Confidence 999999999955 678899999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EEEeccCcc
Q 020454 316 IASCGFLEA 324 (326)
Q Consensus 316 l~s~s~D~~ 324 (326)
|+||+.||-
T Consensus 562 liS~~adGl 570 (775)
T KOG0319|consen 562 LISAGADGL 570 (775)
T ss_pred EEeccCCCc
Confidence 999999985
No 19
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-32 Score=223.31 Aligned_cols=278 Identities=14% Similarity=0.103 Sum_probs=228.7
Q ss_pred cccccCCCCCCC--eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEE
Q 020454 3 RTTTLECPGCPP--LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL 80 (326)
Q Consensus 3 ~~~~~~~~~~~~--~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~ 80 (326)
|+..|.|..-.| -.++++=.+|.|.|||.++. .++..+.-.+.+.. ++.|..+.+ ++++|+.|..|+||
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq-----tmVksfeV~~~PvR--a~kfiaRkn--Wiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ-----TMVKSFEVSEVPVR--AAKFIARKN--WIVTGSDDMQIRVF 82 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccc-----eeeeeeeecccchh--hheeeeccc--eEEEecCCceEEEE
Confidence 344555555444 66899999999999999987 55544443222222 344443433 89999999999999
Q ss_pred eccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc
Q 020454 81 NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC 160 (326)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~ 160 (326)
+..+++.+..++ .|.+.|++++..+ ...++++++.|-.|++|+.+..-. ..+.+. .
T Consensus 83 nynt~ekV~~Fe--------AH~DyIR~iavHP--------t~P~vLtsSDDm~iKlW~we~~wa-------~~qtfe-G 138 (794)
T KOG0276|consen 83 NYNTGEKVKTFE--------AHSDYIRSIAVHP--------TLPYVLTSSDDMTIKLWDWENEWA-------CEQTFE-G 138 (794)
T ss_pred ecccceeeEEee--------ccccceeeeeecC--------CCCeEEecCCccEEEEeeccCcee-------eeeEEc-C
Confidence 999999888887 6778999999877 556999999999999999876432 333444 3
Q ss_pred CCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeE
Q 020454 161 ASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (326)
Q Consensus 161 ~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v 239 (326)
|..-|.+++|+|.. +.+|+++.|++|++|.+.+..+.+++++|. ..|+++.|-+..+..+|++|+.|.+|
T Consensus 139 H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHe---------kGVN~Vdyy~~gdkpylIsgaDD~ti 209 (794)
T KOG0276|consen 139 HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHE---------KGVNCVDYYTGGDKPYLISGADDLTI 209 (794)
T ss_pred cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccc---------cCcceEEeccCCCcceEEecCCCceE
Confidence 45579999999965 899999999999999999999999999876 55889999987777799999999999
Q ss_pred EEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
++||..+. .+++++++|...|..+.|+|.-..|++|++||+++||+..+-++...+.-. .++|++|+-.+.+..++.|
T Consensus 210 KvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g-leRvW~I~~~k~~~~i~vG 287 (794)
T KOG0276|consen 210 KVWDYQTK-SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG-LERVWCIAAHKGDGKIAVG 287 (794)
T ss_pred EEeecchH-HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC-CceEEEEeecCCCCeEEEe
Confidence 99999986 889999999999999999999999999999999999999998888877765 7899999999988888877
Q ss_pred ccCcc
Q 020454 320 GFLEA 324 (326)
Q Consensus 320 s~D~~ 324 (326)
...|.
T Consensus 288 ~Deg~ 292 (794)
T KOG0276|consen 288 FDEGS 292 (794)
T ss_pred ccCCc
Confidence 66554
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-31 Score=213.89 Aligned_cols=267 Identities=13% Similarity=0.131 Sum_probs=208.7
Q ss_pred eeeecCcccEEEEEecCC-cCC----CcceeeeccCCCC--CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceee
Q 020454 17 ALTFDSLGLIKVIEARGE-HGG----VPKVVERWGDPHS--SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV 89 (326)
Q Consensus 17 l~~~~~~G~i~vw~~~~~-~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~ 89 (326)
+.+|..+-..|+|++... ..+ .++.+...+.+.. ...+ .+.+|+.++.+||+|+.||.++||+. +|.++.
T Consensus 194 lasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdV--T~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~ 270 (524)
T KOG0273|consen 194 LASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDV--TSLDWNNDGTLLATGSEDGEARIWNK-DGNLIS 270 (524)
T ss_pred hhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCc--ceEEecCCCCeEEEeecCcEEEEEec-Cchhhh
Confidence 567788888999998741 011 1111112222221 2333 34466777889999999999999998 677767
Q ss_pred eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEE
Q 020454 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 169 (326)
.+. .|.+||.++.+-. .+++|++++.|+++.+||..... ....+.. +..+-..+.
T Consensus 271 tl~--------~HkgPI~slKWnk--------~G~yilS~~vD~ttilwd~~~g~--------~~q~f~~-~s~~~lDVd 325 (524)
T KOG0273|consen 271 TLG--------QHKGPIFSLKWNK--------KGTYILSGGVDGTTILWDAHTGT--------VKQQFEF-HSAPALDVD 325 (524)
T ss_pred hhh--------ccCCceEEEEEcC--------CCCEEEeccCCccEEEEeccCce--------EEEeeee-ccCCccceE
Confidence 766 6779999998755 67899999999999999965432 1122222 233345566
Q ss_pred EcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (326)
Q Consensus 170 ~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~ 249 (326)
|- +..-|++++.|+.|+++.+...+++.++.+|. ..|.++.|.| .+.+|++++.|++++||..... .
T Consensus 326 W~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~---------g~V~alk~n~--tg~LLaS~SdD~TlkiWs~~~~-~ 392 (524)
T KOG0273|consen 326 WQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH---------GEVNALKWNP--TGSLLASCSDDGTLKIWSMGQS-N 392 (524)
T ss_pred Ee-cCceEeecCCCceEEEEEecCCCcceeeeccc---------CceEEEEECC--CCceEEEecCCCeeEeeecCCC-c
Confidence 65 34667899999999999999999998888866 5588999998 4669999999999999998865 5
Q ss_pred ceeEEeecCCceEEEEecCC---------CCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454 250 PVMSFDFRETPIKAVAEEPD---------SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 250 ~~~~~~~~~~~i~~v~~s~~---------~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
....+..|...|..+.|+|+ +..+++++.|++|++||+..+.+++.|..| ..+|.+++|+|+++++|+|+
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH-~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH-QEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC-CCceEEEEecCCCcEEEecC
Confidence 68899999999999999986 347889999999999999999999999988 99999999999999999999
Q ss_pred cCccC
Q 020454 321 FLEAA 325 (326)
Q Consensus 321 ~D~~~ 325 (326)
.||.+
T Consensus 472 ~dg~V 476 (524)
T KOG0273|consen 472 LDGCV 476 (524)
T ss_pred CCCee
Confidence 99964
No 21
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.4e-31 Score=206.80 Aligned_cols=277 Identities=13% Similarity=0.080 Sum_probs=208.4
Q ss_pred CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeee-CCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDD-SQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (326)
Q Consensus 14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~ 92 (326)
+-.+++|.+||.+|+|+..+. ...... .+...+..+.+.. ++....|++++.|.++++|..+.++.+....
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk------~~~~~~--Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~ 186 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGK------SIKTIV--GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL 186 (423)
T ss_pred CceEEEeecCCeeEEEecCCc------eEEEEe--cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH
Confidence 467999999999999999876 222332 2333333333332 2333479999999999999998776544332
Q ss_pred ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc--cc--------------ccccceEEE
Q 020454 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--SA--------------ESSCSTVKS 156 (326)
Q Consensus 93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~--~~--------------~~~~~~~~~ 156 (326)
.. .++|...|.++.... ++..+++++.|..+.+|+...... .. ....+...+
T Consensus 187 ~~----~~GHk~~V~sVsv~~--------sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 187 KV----CRGHKRSVDSVSVDS--------SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred hH----hcccccceeEEEecC--------CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 21 136778888877654 678999999999999999332211 00 011122223
Q ss_pred EEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC
Q 020454 157 WNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (326)
Q Consensus 157 ~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d 236 (326)
.-..|.++|.++.|.+ ...+++++.|.+|+.||+.++..+..+... ....++.++| ..++|++|+.|
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~----------ksl~~i~~~~--~~~Ll~~gssd 321 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN----------KSLNCISYSP--LSKLLASGSSD 321 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC----------cceeEeeccc--ccceeeecCCC
Confidence 3335567899999997 778889999999999999998887765442 3467888888 44599999999
Q ss_pred CeEEEEeCCCCCC--ceeEEeecCCceEEEEecCCCC-eEEEEcCCCcEEEEECCCCe-EEEEEcceecceEEEEEECCC
Q 020454 237 HQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 237 g~v~iwd~~~~~~--~~~~~~~~~~~i~~v~~s~~~~-~l~~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~~p~ 312 (326)
..+++||+|++.. +.+++.+|...|.++.|+|... +|++|+.|+++++||+++.+ +++.+.+| ...|.++.|+ +
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-~DKvl~vdW~-~ 399 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-NDKVLSVDWN-E 399 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-CceEEEEecc-C
Confidence 9999999997533 4567889999999999999755 56699999999999999887 89999998 9999999996 4
Q ss_pred CCEEEEeccCccC
Q 020454 313 LPIIASCGFLEAA 325 (326)
Q Consensus 313 ~~~l~s~s~D~~~ 325 (326)
+.+|+|||.|...
T Consensus 400 ~~~IvSGGaD~~l 412 (423)
T KOG0313|consen 400 GGLIVSGGADNKL 412 (423)
T ss_pred CceEEeccCcceE
Confidence 5689999999875
No 22
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-30 Score=197.76 Aligned_cols=234 Identities=15% Similarity=0.149 Sum_probs=192.9
Q ss_pred EeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEE
Q 020454 58 SIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM 137 (326)
Q Consensus 58 ~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i 137 (326)
++.|..+.++|++++.||.+.|||.-+..-...+.. ....|...++.+ .++.++.++.|+...|
T Consensus 60 ~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl--------~s~WVMtCA~sP--------Sg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 60 AMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL--------PSSWVMTCAYSP--------SGNFVACGGLDNKCSI 123 (343)
T ss_pred eeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--------CceeEEEEEECC--------CCCeEEecCcCceeEE
Confidence 345566677999999999999999876665555442 236788888766 6778999999999999
Q ss_pred EEccccccccccccceEEEE--EccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCc
Q 020454 138 RSIEVTKVSAESSCSTVKSW--NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW 215 (326)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (326)
|++...+. ++.+++- -..|.+-+.|..|-+ ...|+|++-|.++.+||+++++.+..+.+|. ..
T Consensus 124 y~ls~~d~-----~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~---------gD 188 (343)
T KOG0286|consen 124 YPLSTRDA-----EGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHT---------GD 188 (343)
T ss_pred Eecccccc-----cccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCc---------cc
Confidence 99885421 2222221 234567799999987 5567799999999999999999999999887 44
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC 295 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~ 295 (326)
|.++.++|. +++.|++|+.|+..++||+|.+ ..+++|.+|++.|++|+|.|+|.-+++|+.|++.++||++..+.+..
T Consensus 189 V~slsl~p~-~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ 266 (343)
T KOG0286|consen 189 VMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV 266 (343)
T ss_pred EEEEecCCC-CCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee
Confidence 778899986 6779999999999999999988 78999999999999999999999999999999999999999998888
Q ss_pred Ecce-ecceEEEEEECCCCCEEEEeccCcc
Q 020454 296 FIGK-CSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 296 ~~~~-~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
|... ...+|++++|+..|++|++|..|..
T Consensus 267 ys~~~~~~gitSv~FS~SGRlLfagy~d~~ 296 (343)
T KOG0286|consen 267 YSHDSIICGITSVAFSKSGRLLFAGYDDFT 296 (343)
T ss_pred eccCcccCCceeEEEcccccEEEeeecCCc
Confidence 7621 2568999999999999999977754
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.2e-32 Score=209.84 Aligned_cols=225 Identities=14% Similarity=0.271 Sum_probs=194.0
Q ss_pred eeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454 60 DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (326)
Q Consensus 60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~ 139 (326)
+-++.+.+|++|+.|++|+|||+.+++++.++. +|...+.++++.+ ...+++++++|+.|+.||
T Consensus 158 avdP~n~wf~tgs~DrtikIwDlatg~Lkltlt--------Ghi~~vr~vavS~--------rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 158 AVDPGNEWFATGSADRTIKIWDLATGQLKLTLT--------GHIETVRGVAVSK--------RHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eeCCCceeEEecCCCceeEEEEcccCeEEEeec--------chhheeeeeeecc--------cCceEEEecCCCeeEEEe
Confidence 334556799999999999999999999987776 5557888888766 345999999999999999
Q ss_pred ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454 140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (326)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (326)
++.++ .|+-|. .+-..|+|++.+|.-..|++|+.|.++++||+++...+..+.+|. ..|.++
T Consensus 222 Le~nk--------vIR~Yh-GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~---------~~V~~V 283 (460)
T KOG0285|consen 222 LEYNK--------VIRHYH-GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT---------NPVASV 283 (460)
T ss_pred chhhh--------hHHHhc-cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC---------CcceeE
Confidence 98765 344443 345689999999999999999999999999999999999999987 557888
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce
Q 020454 220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (326)
Q Consensus 220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~ 299 (326)
.+.|. ++ .+++|+.|++|++||++.+ +....+..|...+.+++.+|....+++++.| .|+-|++..|+.++.+.+|
T Consensus 284 ~~~~~-dp-qvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh 359 (460)
T KOG0285|consen 284 MCQPT-DP-QVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGH 359 (460)
T ss_pred EeecC-CC-ceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccc
Confidence 88875 34 7999999999999999988 5577888999999999999999999998888 7999999999999999998
Q ss_pred ecceEEEEEECCCCCEEEEeccCcc
Q 020454 300 CSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 300 ~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
..-|++++.+.|+ ++++|+..|.
T Consensus 360 -~~iintl~~nsD~-v~~~G~dng~ 382 (460)
T KOG0285|consen 360 -NAIINTLSVNSDG-VLVSGGDNGS 382 (460)
T ss_pred -cceeeeeeeccCc-eEEEcCCceE
Confidence 9999999998876 7778876654
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-30 Score=218.92 Aligned_cols=260 Identities=17% Similarity=0.250 Sum_probs=209.5
Q ss_pred ecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCC
Q 020454 20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA 99 (326)
Q Consensus 20 ~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 99 (326)
++.-|++-||+.... ..+. ..+.+...+.++ +.++++.++++|+.||.|+|||...+-+..++.
T Consensus 326 ~~klgQLlVweWqsE-----sYVl--KQQgH~~~i~~l--~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt------- 389 (893)
T KOG0291|consen 326 CSKLGQLLVWEWQSE-----SYVL--KQQGHSDRITSL--AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT------- 389 (893)
T ss_pred CCccceEEEEEeecc-----ceee--eccccccceeeE--EECCCCcEEEeccCCCcEEEEeccCceEEEEec-------
Confidence 445699999999976 3322 233444444433 445667799999999999999998888877776
Q ss_pred CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEE
Q 020454 100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179 (326)
Q Consensus 100 ~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 179 (326)
.|...++++.+.. .++.+++.+-||+|+.||+.... ..+.+....+....|++.+|.|.++..
T Consensus 390 -eHts~Vt~v~f~~--------~g~~llssSLDGtVRAwDlkRYr--------NfRTft~P~p~QfscvavD~sGelV~A 452 (893)
T KOG0291|consen 390 -EHTSGVTAVQFTA--------RGNVLLSSSLDGTVRAWDLKRYR--------NFRTFTSPEPIQFSCVAVDPSGELVCA 452 (893)
T ss_pred -cCCCceEEEEEEe--------cCCEEEEeecCCeEEeeeecccc--------eeeeecCCCceeeeEEEEcCCCCEEEe
Confidence 5668899998766 56789999999999999987644 567777777778899999999999999
Q ss_pred ecCCCe-EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC
Q 020454 180 GGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE 258 (326)
Q Consensus 180 g~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 258 (326)
|+.|.. |.+|++++|+.+-.+++|. .+|.+++|+| .+..|++++.|++||+||+-.....+.+++. .
T Consensus 453 G~~d~F~IfvWS~qTGqllDiLsGHE---------gPVs~l~f~~--~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i-~ 520 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQTGQLLDILSGHE---------GPVSGLSFSP--DGSLLASGSWDKTVRIWDIFSSSGTVETLEI-R 520 (893)
T ss_pred eccceEEEEEEEeecCeeeehhcCCC---------CcceeeEEcc--ccCeEEeccccceEEEEEeeccCceeeeEee-c
Confidence 999866 9999999999999999876 6788999998 5569999999999999998755445566644 4
Q ss_pred CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce-------------------ecceEEEEEECCCCCEEEEe
Q 020454 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------------------CSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 259 ~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-------------------~~~~v~~l~~~p~~~~l~s~ 319 (326)
..+..++|+|+|+.|++++.||.|.+||.+.+.....+.+. .....+.|++++||.+|++|
T Consensus 521 sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAg 600 (893)
T KOG0291|consen 521 SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAG 600 (893)
T ss_pred cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEec
Confidence 77899999999999999999999999999876554333321 12468899999999999999
Q ss_pred ccCcc
Q 020454 320 GFLEA 324 (326)
Q Consensus 320 s~D~~ 324 (326)
|..+.
T Consensus 601 G~sn~ 605 (893)
T KOG0291|consen 601 GESNS 605 (893)
T ss_pred CCccc
Confidence 97654
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.2e-30 Score=208.97 Aligned_cols=264 Identities=17% Similarity=0.210 Sum_probs=206.7
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++++.+|.+++|++..+ +.......+. ..+..+.+. +.++++++++.||.|++|++.+++....+.
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~-----~~~~~~~~~~--~~i~~~~~~--~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~-- 90 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETG-----ELLRTLKGHT--GPVRDVAAS--ADGTYLASGSSDKTIRLWDLETGECVRTLT-- 90 (289)
T ss_pred CEEEEeecCcEEEEEEeeCC-----CcEEEEecCC--cceeEEEEC--CCCCEEEEEcCCCeEEEEEcCcccceEEEe--
Confidence 56888889999999999876 2322332222 223344443 344689999999999999998766555554
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.+...+.++.+.+ ....+++++.+|.+.+|++.... .+..+. .+...+.++.++|++
T Consensus 91 ------~~~~~i~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~-~~~~~i~~~~~~~~~ 147 (289)
T cd00200 91 ------GHTSYVSSVAFSP--------DGRILSSSSRDKTIKVWDVETGK--------CLTTLR-GHTDWVNSVAFSPDG 147 (289)
T ss_pred ------ccCCcEEEEEEcC--------CCCEEEEecCCCeEEEEECCCcE--------EEEEec-cCCCcEEEEEEcCcC
Confidence 3345788888755 33566666669999999987432 333333 346689999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
.++++++.|+.|++||+++++.+..+..+. ..+.++.|+| +++.+++++.++.|++||++.. +++..+
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~--~~~~l~~~~~~~~i~i~d~~~~-~~~~~~ 215 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGHT---------GEVNSVAFSP--DGEKLLSSSSDGTIKLWDLSTG-KCLGTL 215 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecCc---------cccceEEECC--CcCEEEEecCCCcEEEEECCCC-ceecch
Confidence 999998889999999999877766655432 4578899988 4558888888999999999976 567777
Q ss_pred eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..+...+.+++|+|++.++++++.+|.|++||+.+++....+..| ...|.+++|+|++++|++++.||.+
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcEEEEEECCCCCEEEEecCCCeE
Confidence 778889999999999888889888999999999999999999887 8899999999999999999999865
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.8e-30 Score=216.58 Aligned_cols=283 Identities=16% Similarity=0.176 Sum_probs=218.3
Q ss_pred CCeeeeeecCcccEEEEEecCCcC---CCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceee
Q 020454 13 PPLRALTFDSLGLIKVIEARGEHG---GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV 89 (326)
Q Consensus 13 ~~~~l~~~~~~G~i~vw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~ 89 (326)
|..++++.+-...+.||...+... .++.+..++. .+..-+.++ .|+.+.++|++|+.|-++++|.+...+-..
T Consensus 106 Png~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~--g~fddi~si--~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~ 181 (893)
T KOG0291|consen 106 PNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYL--GHFDDITSI--DWSDDSRLLVTGSRDLSARLFGVDGNKNLF 181 (893)
T ss_pred CCCcEEEEEecceeEEEecCcchhcccCcceEeeeec--CCccceeEE--EeccCCceEEeccccceEEEEEeccccccc
Confidence 446777777888999999887622 1222322332 333344444 445556699999999999999997555434
Q ss_pred eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc------------------------ccc
Q 020454 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV------------------------TKV 145 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~------------------------~~~ 145 (326)
.+.. ..|.++|.+.-+-. +...+++.+.||.+.+|..+. ++.
T Consensus 182 ~~~l------~gHkd~VvacfF~~--------~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek 247 (893)
T KOG0291|consen 182 TYAL------NGHKDYVVACFFGA--------NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEK 247 (893)
T ss_pred eEec------cCCCcceEEEEecc--------CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhh
Confidence 4333 27778898665433 445799999999999998871 110
Q ss_pred ----------------------------------------------------------------------------cccc
Q 020454 146 ----------------------------------------------------------------------------SAES 149 (326)
Q Consensus 146 ----------------------------------------------------------------------------~~~~ 149 (326)
..++
T Consensus 248 ~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~ 327 (893)
T KOG0291|consen 248 THKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS 327 (893)
T ss_pred hcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC
Confidence 1122
Q ss_pred ccceEEEEEccC----------CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454 150 SCSTVKSWNVCA----------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (326)
Q Consensus 150 ~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (326)
.-+.+.+|+... ...+.+++++|||+++|+|+.|+.|+|||..++-++.++..|. ..|+++
T Consensus 328 klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt---------s~Vt~v 398 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT---------SGVTAV 398 (893)
T ss_pred ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC---------CceEEE
Confidence 334555665432 2348899999999999999999999999999999988888776 668999
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec-CCceEEEEecCCCCeEEEEcCCCc-EEEEECCCCeEEEEEc
Q 020454 220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCFI 297 (326)
Q Consensus 220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~i~~v~~s~~~~~l~~g~~dg~-v~iwd~~~~~~~~~~~ 297 (326)
.|+. .++.+++.+.||+|+.||+... +..+++... .-+..+++..|.|..+.+|+.|.. |++|++++|+++..+.
T Consensus 399 ~f~~--~g~~llssSLDGtVRAwDlkRY-rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs 475 (893)
T KOG0291|consen 399 QFTA--RGNVLLSSSLDGTVRAWDLKRY-RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS 475 (893)
T ss_pred EEEe--cCCEEEEeecCCeEEeeeeccc-ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc
Confidence 9997 5679999999999999999977 567777654 346788899999999999999874 9999999999999999
Q ss_pred ceecceEEEEEECCCCCEEEEeccCccCC
Q 020454 298 GKCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 298 ~~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
|| ++||.+|+|+|.+..|+|+|+|++++
T Consensus 476 GH-EgPVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 476 GH-EGPVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred CC-CCcceeeEEccccCeEEeccccceEE
Confidence 99 99999999999999999999999874
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-31 Score=221.13 Aligned_cols=230 Identities=17% Similarity=0.202 Sum_probs=199.7
Q ss_pred eeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454 60 DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (326)
Q Consensus 60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~ 139 (326)
+-++..++++++--+|.|.|||.++...++.++. .+-||++..+.. ..+-+++|+.|..|++|+
T Consensus 20 d~HPtePw~la~LynG~V~IWnyetqtmVksfeV--------~~~PvRa~kfia--------RknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 20 DFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--------SEVPVRAAKFIA--------RKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred ecCCCCceEEEeeecCeeEEEecccceeeeeeee--------cccchhhheeee--------ccceEEEecCCceEEEEe
Confidence 3456677999999999999999998888888774 235777666665 456899999999999999
Q ss_pred ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceee
Q 020454 140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTS 218 (326)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~ 218 (326)
++..+ .++.+.. |..-|++++.||...++++++.|-+|++||.+..- +...+.+|. .+|..
T Consensus 84 ynt~e--------kV~~FeA-H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~---------HyVMq 145 (794)
T KOG0276|consen 84 YNTGE--------KVKTFEA-HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE---------HYVMQ 145 (794)
T ss_pred cccce--------eeEEeec-cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc---------eEEEE
Confidence 98765 6777774 57899999999999999999999999999998653 344455543 67999
Q ss_pred eEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCC--CeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS--FNIYIGNGSGDLASVDIRTGKLLGCF 296 (326)
Q Consensus 219 ~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~--~~l~~g~~dg~v~iwd~~~~~~~~~~ 296 (326)
++|.|. |.+.+++++-|++|++|.+.+. .|..++++|+..|++|.|-+-| .+|++|+.|..++|||.++..+++++
T Consensus 146 v~fnPk-D~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL 223 (794)
T KOG0276|consen 146 VAFNPK-DPNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL 223 (794)
T ss_pred EEecCC-CccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh
Confidence 999997 5669999999999999999977 7899999999999999998754 69999999999999999999999999
Q ss_pred cceecceEEEEEECCCCCEEEEeccCccCC
Q 020454 297 IGKCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 297 ~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
.|| ...|..+.|+|.-++|+|||.||+++
T Consensus 224 eGH-t~Nvs~v~fhp~lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 224 EGH-TNNVSFVFFHPELPIIISGSEDGTVR 252 (794)
T ss_pred hcc-cccceEEEecCCCcEEEEecCCccEE
Confidence 999 99999999999999999999999864
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-30 Score=203.11 Aligned_cols=273 Identities=16% Similarity=0.128 Sum_probs=205.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..++||+.|..-.+|++.++ ....... .+...+.++.|.. ++.+||+|..+|.|+||+..++.....+..
T Consensus 77 ~l~aTGGgDD~AflW~~~~g-----e~~~elt--gHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~~stg~~~~~~~~- 146 (399)
T KOG0296|consen 77 NLVATGGGDDLAFLWDISTG-----EFAGELT--GHKDSVTCCSFSH--DGTLLATGDMSGKVLVFKVSTGGEQWKLDQ- 146 (399)
T ss_pred ceEEecCCCceEEEEEccCC-----cceeEec--CCCCceEEEEEcc--CceEEEecCCCccEEEEEcccCceEEEeec-
Confidence 55788999999999999988 3333333 3444555555543 455999999999999999998887666641
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.-..+.=+.+.+ ....+++|+.||.+.+|.+.... ..+++. .+..++++=.|.|+|
T Consensus 147 -------e~~dieWl~WHp--------~a~illAG~~DGsvWmw~ip~~~--------~~kv~~-Gh~~~ct~G~f~pdG 202 (399)
T KOG0296|consen 147 -------EVEDIEWLKWHP--------RAHILLAGSTDGSVWMWQIPSQA--------LCKVMS-GHNSPCTCGEFIPDG 202 (399)
T ss_pred -------ccCceEEEEecc--------cccEEEeecCCCcEEEEECCCcc--------eeeEec-CCCCCcccccccCCC
Confidence 113344355444 55789999999999999987642 445554 357789999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCC---CCC---------------------------------------CCcCC
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPP---KNS---------------------------------------LGIFT 212 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~---~~~---------------------------------------~~~~~ 212 (326)
+.++++..|++|++||+.+++++..+.... ..+ +...+
T Consensus 203 Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~ 282 (399)
T KOG0296|consen 203 KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ 282 (399)
T ss_pred ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence 999999999999999999998877665110 000 00011
Q ss_pred CCceeeeEEeecC-CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454 213 PTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (326)
Q Consensus 213 ~~~v~~~~~~p~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~ 291 (326)
...+.++.+.|.. .-.++|+|+.||+|.|||+... . ++..-.|+..|+.+.|-+ ..+|++++.+|.|+.||.++|+
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-~-~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS-T-LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccc-h-hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccc
Confidence 1123333343321 1136788999999999999876 4 344446778899999988 7899999999999999999999
Q ss_pred EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 292 LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 292 ~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
++..+.|| ..+|.+++++|+.++++|+|.|+.|
T Consensus 360 l~~~y~GH-~~~Il~f~ls~~~~~vvT~s~D~~a 392 (399)
T KOG0296|consen 360 LKFTYTGH-QMGILDFALSPQKRLVVTVSDDNTA 392 (399)
T ss_pred eEEEEecC-chheeEEEEcCCCcEEEEecCCCeE
Confidence 99999999 9999999999999999999999876
No 29
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-30 Score=219.54 Aligned_cols=271 Identities=14% Similarity=0.130 Sum_probs=223.8
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~ 95 (326)
.++..+..+.+++|+..+. +-+.+... ..+++.+|. +.++++++|..+|.+.+||+....++..++
T Consensus 386 ~~~~Sga~~SikiWn~~t~-----kciRTi~~----~y~l~~~Fv--pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~--- 451 (888)
T KOG0306|consen 386 ILLASGAGESIKIWNRDTL-----KCIRTITC----GYILASKFV--PGDRYIVLGTKNGELQVFDLASASLVETIR--- 451 (888)
T ss_pred eeeeecCCCcEEEEEccCc-----ceeEEecc----ccEEEEEec--CCCceEEEeccCCceEEEEeehhhhhhhhh---
Confidence 3555566789999999976 44444432 255666665 345589999999999999998888877766
Q ss_pred CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE---ccCCCceEEEEEcC
Q 020454 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN---VCASGTIAFSKVDI 172 (326)
Q Consensus 96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~ 172 (326)
.|++.|..++..+ ++..+++++.|.+|++|++.......+.....+.+-. +.-...|.|++++|
T Consensus 452 -----AHdgaIWsi~~~p--------D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 452 -----AHDGAIWSISLSP--------DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred -----ccccceeeeeecC--------CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 6779999988766 6678999999999999998765433233322222211 11246799999999
Q ss_pred CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (326)
Q Consensus 173 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 252 (326)
++++||++-.|+++++|-+.+.+....+.+|. -+|.++..+| ++++++||+.|+.|++|-+.-+ .+-+
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlKFflsLYGHk---------LPV~smDIS~--DSklivTgSADKnVKiWGLdFG-DCHK 586 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK---------LPVLSMDISP--DSKLIVTGSADKNVKIWGLDFG-DCHK 586 (888)
T ss_pred CCcEEEEEeccCeEEEEEecceeeeeeecccc---------cceeEEeccC--CcCeEEeccCCCceEEeccccc-hhhh
Confidence 99999999999999999999999888888876 4588899998 6779999999999999999977 6778
Q ss_pred EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 253 ~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
++-.|+..|.++.|-|+...+++++.|+.|+-||-..-+.++.+.+| ...|++++..|+|.+++|+|.|..++
T Consensus 587 S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H-~~ev~cLav~~~G~~vvs~shD~sIR 659 (888)
T KOG0306|consen 587 SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH-HSEVWCLAVSPNGSFVVSSSHDKSIR 659 (888)
T ss_pred hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc-hheeeeeEEcCCCCeEEeccCCceeE
Confidence 88899999999999999999999999999999999999999999998 99999999999999999999998753
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.4e-33 Score=214.48 Aligned_cols=255 Identities=14% Similarity=0.232 Sum_probs=200.6
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++|..|.+|+|||..+. ....... .+...++++.++.. ++++|+.|.+|++||.++++.+..+.
T Consensus 208 ~kiVSGlrDnTikiWD~n~~-----~c~~~L~--GHtGSVLCLqyd~r----viisGSSDsTvrvWDv~tge~l~tli-- 274 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKNSL-----ECLKILT--GHTGSVLCLQYDER----VIVSGSSDSTVRVWDVNTGEPLNTLI-- 274 (499)
T ss_pred hhhhcccccCceEEeccccH-----HHHHhhh--cCCCcEEeeeccce----EEEecCCCceEEEEeccCCchhhHHh--
Confidence 56899999999999998865 2211222 34444555555433 79999999999999999999887766
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.|...|.++.+ ..+++++++.|..+.+|++.... +-+++..-..+...|+.+.|+ .
T Consensus 275 ------hHceaVLhlrf----------~ng~mvtcSkDrsiaVWdm~sps------~it~rrVLvGHrAaVNvVdfd--~ 330 (499)
T KOG0281|consen 275 ------HHCEAVLHLRF----------SNGYMVTCSKDRSIAVWDMASPT------DITLRRVLVGHRAAVNVVDFD--D 330 (499)
T ss_pred ------hhcceeEEEEE----------eCCEEEEecCCceeEEEeccCch------HHHHHHHHhhhhhheeeeccc--c
Confidence 45578988887 55899999999999999987533 112222223445678888885 5
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
+++++++.|.+|++|++.+++.+..+.+|+.. |.++.+ .++++++|+.|.+|++||+..+ .++..+
T Consensus 331 kyIVsASgDRTikvW~~st~efvRtl~gHkRG---------IAClQY----r~rlvVSGSSDntIRlwdi~~G-~cLRvL 396 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG---------IACLQY----RDRLVVSGSSDNTIRLWDIECG-ACLRVL 396 (499)
T ss_pred ceEEEecCCceEEEEeccceeeehhhhccccc---------ceehhc----cCeEEEecCCCceEEEEecccc-HHHHHH
Confidence 79999999999999999999999999888744 444444 4669999999999999999988 678999
Q ss_pred eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe---------EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~---------~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
++|+.-|.++.| |.+.|++|..||+|++||+.++. ++..+..| .+.|..+.| |...|++++.|.++
T Consensus 397 eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQF--D~fqIvsssHddtI 471 (499)
T KOG0281|consen 397 EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQF--DEFQIISSSHDDTI 471 (499)
T ss_pred hchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEee--cceEEEeccCCCeE
Confidence 999999999999 67899999999999999998753 23445566 999999999 55678888887653
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.5e-29 Score=232.61 Aligned_cols=269 Identities=13% Similarity=0.117 Sum_probs=200.3
Q ss_pred eeeeeecCcccEEEEEecCCc---CCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454 15 LRALTFDSLGLIKVIEARGEH---GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~ 91 (326)
-.+++|+.||.|+||+..... ............ ...+..++|... .+.+|++++.||+|++||+.+++.+..+
T Consensus 496 ~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~-~~~~las~~~Dg~v~lWd~~~~~~~~~~ 571 (793)
T PLN00181 496 EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS---RSKLSGICWNSY-IKSQVASSNFEGVVQVWDVARSQLVTEM 571 (793)
T ss_pred CEEEEEeCCCEEEEEECCcccccccccccceEEecc---cCceeeEEeccC-CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 458899999999999976420 000000111111 123344555322 2457999999999999999888776665
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 171 (326)
. .|.+.|.++.+.+. ++..|++++.||.|++||+.... .+..+. ....+.++.|+
T Consensus 572 ~--------~H~~~V~~l~~~p~-------~~~~L~Sgs~Dg~v~iWd~~~~~--------~~~~~~--~~~~v~~v~~~ 626 (793)
T PLN00181 572 K--------EHEKRVWSIDYSSA-------DPTLLASGSDDGSVKLWSINQGV--------SIGTIK--TKANICCVQFP 626 (793)
T ss_pred c--------CCCCCEEEEEEcCC-------CCCEEEEEcCCCEEEEEECCCCc--------EEEEEe--cCCCeEEEEEe
Confidence 4 56688999987541 34689999999999999986533 233333 24578899995
Q ss_pred -CCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC--
Q 020454 172 -ISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-- 247 (326)
Q Consensus 172 -~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~-- 247 (326)
+++.+|++|+.|+.|++||+++.+ ++..+.+|. ..|+.+.|. ++.+|++++.|++|++||++..
T Consensus 627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~---------~~V~~v~f~---~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS---------KTVSYVRFV---DSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC---------CCEEEEEEe---CCCEEEEEECCCEEEEEeCCCCcc
Confidence 468999999999999999998765 344444433 568899996 3458999999999999998742
Q ss_pred ---CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE-------------cceecceEEEEEECC
Q 020454 248 ---RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-------------IGKCSGSIRSIARHP 311 (326)
Q Consensus 248 ---~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~-------------~~~~~~~v~~l~~~p 311 (326)
..++.++.+|...+..++|+|++.+|++|+.||.|++|+.....++..+ ..+ ...|.+++|+|
T Consensus 695 ~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~V~~v~ws~ 773 (793)
T PLN00181 695 GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA-SQFISSVCWRG 773 (793)
T ss_pred ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCC-CcEEEEEEEcC
Confidence 2467888899999999999999999999999999999998765443222 123 56799999999
Q ss_pred CCCEEEEeccCccC
Q 020454 312 TLPIIASCGFLEAA 325 (326)
Q Consensus 312 ~~~~l~s~s~D~~~ 325 (326)
++..|++|+.||.+
T Consensus 774 ~~~~lva~~~dG~I 787 (793)
T PLN00181 774 QSSTLVAANSTGNI 787 (793)
T ss_pred CCCeEEEecCCCcE
Confidence 99999999999975
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=1.1e-30 Score=222.13 Aligned_cols=230 Identities=14% Similarity=0.150 Sum_probs=192.0
Q ss_pred CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~ 129 (326)
+...++.++|.+ +.++|++++.|++||+|.+.+...+-.+. +|..||..+.+.+ .+-+++++
T Consensus 450 H~GPVyg~sFsP--d~rfLlScSED~svRLWsl~t~s~~V~y~--------GH~~PVwdV~F~P--------~GyYFata 511 (707)
T KOG0263|consen 450 HSGPVYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSCLVIYK--------GHLAPVWDVQFAP--------RGYYFATA 511 (707)
T ss_pred CCCceeeeeecc--cccceeeccCCcceeeeecccceeEEEec--------CCCcceeeEEecC--------CceEEEec
Confidence 344555666654 45589999999999999998887766666 6668888777654 56789999
Q ss_pred ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG 209 (326)
Q Consensus 130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 209 (326)
+.|++.++|..+... ++|++. .+...|.|++|||+.+|+++|+.|.++++||+.++..+..+.+|.
T Consensus 512 s~D~tArLWs~d~~~--------PlRifa-ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~----- 577 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNK--------PLRIFA-GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK----- 577 (707)
T ss_pred CCCceeeeeecccCC--------chhhhc-ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC-----
Confidence 999999999966533 556654 456789999999999999999999999999999999999888866
Q ss_pred cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
..|++++|+| +|++|++|+.||.|++||+.++ .++..+..|.+.|.++.|+.+|..|++|+.|.+|++||+..
T Consensus 578 ----~~V~al~~Sp--~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 578 ----GPVTALAFSP--CGRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ----CceEEEEEcC--CCceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 6799999999 7889999999999999999987 67889999999999999999999999999999999999864
Q ss_pred C------------------------eEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454 290 G------------------------KLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 290 ~------------------------~~~~~~~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
- .++..|... ..+|.+|.|...+-.|+.|
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK-~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 651 VIELLNLGHISTSNSAITQENNASSLLLGSFYTK-NTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred hcccccccccccccccccccCCCCcceeeeeeec-CceEEEEEEeccceeEEec
Confidence 2 145566665 7789999998766555544
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.3e-31 Score=205.30 Aligned_cols=227 Identities=16% Similarity=0.232 Sum_probs=194.0
Q ss_pred CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcc
Q 020454 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (326)
Q Consensus 62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~ 141 (326)
.+...++++++.|++|++||..++++...++ +|.+.+..+.+.. .+..+++++.|=.+++||++
T Consensus 117 hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr--------GHt~sv~di~~~a--------~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 117 HPSEALVVSASEDATIKVFDTETGELERSLR--------GHTDSVFDISFDA--------SGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred ccCceEEEEecCCceEEEEEccchhhhhhhh--------ccccceeEEEEec--------CccEEEecCCccchhheeHH
Confidence 4555578888999999999999999966666 6667788888755 56789999999999999987
Q ss_pred ccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (326)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (326)
.... .++. ...+...|.++.|-|.+.++++++.|.+|+.|++.++-+++++.+|. .||..+..
T Consensus 181 ~~~~-------c~ks-~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~---------ewvr~v~v 243 (406)
T KOG0295|consen 181 TFFR-------CIKS-LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS---------EWVRMVRV 243 (406)
T ss_pred HHHH-------HHHH-hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch---------HhEEEEEe
Confidence 6321 1111 12445679999999999999999999999999999999999988865 58888876
Q ss_pred eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC---------------CCeEEEEcCCCcEEEEE
Q 020454 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD---------------SFNIYIGNGSGDLASVD 286 (326)
Q Consensus 222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~---------------~~~l~~g~~dg~v~iwd 286 (326)
+ .||.++++++.|.+|++|-+.+. ++...+..|+.+|.+++|.|. +.++.+++.|++|++||
T Consensus 244 ~--~DGti~As~s~dqtl~vW~~~t~-~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd 320 (406)
T KOG0295|consen 244 N--QDGTIIASCSNDQTLRVWVVATK-QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD 320 (406)
T ss_pred c--CCeeEEEecCCCceEEEEEeccc-hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence 5 48889999999999999999976 667788899999999999752 25889999999999999
Q ss_pred CCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 287 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+.++.++.++.+| ...|+.++|+|.|+||+||..|++.
T Consensus 321 v~tg~cL~tL~gh-dnwVr~~af~p~Gkyi~ScaDDktl 358 (406)
T KOG0295|consen 321 VSTGMCLFTLVGH-DNWVRGVAFSPGGKYILSCADDKTL 358 (406)
T ss_pred ccCCeEEEEEecc-cceeeeeEEcCCCeEEEEEecCCcE
Confidence 9999999999998 9999999999999999999999975
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=4.7e-30 Score=199.82 Aligned_cols=263 Identities=13% Similarity=0.108 Sum_probs=212.2
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++|+.|++++|||+.++ ++..+...+ ...+-.+.+ +...+||++++.|+.|+.||++.+++++.+.
T Consensus 164 ~wf~tgs~DrtikIwDlatg-----~LkltltGh--i~~vr~vav--S~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh-- 232 (460)
T KOG0285|consen 164 EWFATGSADRTIKIWDLATG-----QLKLTLTGH--IETVRGVAV--SKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH-- 232 (460)
T ss_pred eeEEecCCCceeEEEEcccC-----eEEEeecch--hheeeeeee--cccCceEEEecCCCeeEEEechhhhhHHHhc--
Confidence 56899999999999999988 665555533 333333333 2345699999999999999999999988877
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
+|-..|.++...+ ..+.|++++.|..+++||++... .+.+.. .+..+|..+.+.|..
T Consensus 233 ------GHlS~V~~L~lhP--------Tldvl~t~grDst~RvWDiRtr~--------~V~~l~-GH~~~V~~V~~~~~d 289 (460)
T KOG0285|consen 233 ------GHLSGVYCLDLHP--------TLDVLVTGGRDSTIRVWDIRTRA--------SVHVLS-GHTNPVASVMCQPTD 289 (460)
T ss_pred ------cccceeEEEeccc--------cceeEEecCCcceEEEeeecccc--------eEEEec-CCCCcceeEEeecCC
Confidence 5667888898766 67799999999999999998765 333333 357789999999988
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
..+++|+.|++|++||++.++....+..|. ..|.+++.+|.. +.||+++.| .|+-|++..+ ..+..+
T Consensus 290 pqvit~S~D~tvrlWDl~agkt~~tlt~hk---------ksvral~lhP~e--~~fASas~d-nik~w~~p~g-~f~~nl 356 (460)
T KOG0285|consen 290 PQVITGSHDSTVRLWDLRAGKTMITLTHHK---------KSVRALCLHPKE--NLFASASPD-NIKQWKLPEG-EFLQNL 356 (460)
T ss_pred CceEEecCCceEEEeeeccCceeEeeeccc---------ceeeEEecCCch--hhhhccCCc-cceeccCCcc-chhhcc
Confidence 889999999999999999999888877765 457888999853 378888766 4899999977 557778
Q ss_pred eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-----ce--ecceEEEEEECCCCCEEEEeccCccC
Q 020454 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-----GK--CSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-----~~--~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.+|...|.+++...|+ ++++|+.+|.+.+||.++|-..+..+ |- -+..|.+.+|...+..|+||..|+++
T Consensus 357 sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtI 433 (460)
T KOG0285|consen 357 SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTI 433 (460)
T ss_pred ccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcce
Confidence 8999999999987665 88899999999999999986554432 10 14568899999999999999999875
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1e-28 Score=201.17 Aligned_cols=285 Identities=16% Similarity=0.134 Sum_probs=215.5
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeecc-CCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~ 93 (326)
-++++.+.||.+.+||-.++ ..+..+. +..+...+++++|.++ +..+++++.|.+++|||+.+++++.++..
T Consensus 203 ~~Fat~gsDgki~iyDGktg-----e~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~SaDkt~KIWdVs~~slv~t~~~ 275 (603)
T KOG0318|consen 203 SRFATAGSDGKIYIYDGKTG-----EKVGELEDSDAHKGSIFALSWSPD--STQFLTVSADKTIKIWDVSTNSLVSTWPM 275 (603)
T ss_pred CeEEEecCCccEEEEcCCCc-----cEEEEecCCCCccccEEEEEECCC--CceEEEecCCceEEEEEeeccceEEEeec
Confidence 78999999999999998877 4444554 4566777888887644 44799999999999999988776555432
Q ss_pred cCC-----------------------------------CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEE
Q 020454 94 AGD-----------------------------------SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR 138 (326)
Q Consensus 94 ~~~-----------------------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~ 138 (326)
-.. ....+|...|++|...+ +..+|++++.||.|.-|
T Consensus 276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~--------d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP--------DGKTIYSGSYDGHINSW 347 (603)
T ss_pred CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC--------CCCEEEeeccCceEEEE
Confidence 100 01245677788887655 66899999999999999
Q ss_pred Ecccccc-----------------------ccccccceEEEEEccCCC--------------------------------
Q 020454 139 SIEVTKV-----------------------SAESSCSTVKSWNVCASG-------------------------------- 163 (326)
Q Consensus 139 ~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~-------------------------------- 163 (326)
+...... .+.+.|.++++......+
T Consensus 348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence 9765321 122344455554331110
Q ss_pred -----------------ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454 164 -----------------TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (326)
Q Consensus 164 -----------------~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 226 (326)
...+++++|+++.+++|+.|+.|+||.+.........+ .+.++..|+.++|+| +
T Consensus 428 iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~-------~~~h~a~iT~vaySp--d 498 (603)
T KOG0318|consen 428 IVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK-------LLEHRAAITDVAYSP--D 498 (603)
T ss_pred EEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee-------eecccCCceEEEECC--C
Confidence 14589999999999999999999999998765433322 133557899999998 6
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-ceecceEE
Q 020454 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-GKCSGSIR 305 (326)
Q Consensus 227 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-~~~~~~v~ 305 (326)
+.+||++...+.+.+||..+.+.....+.+|...|.+++|+|+..++|+|+.|-.|.||++......-.++ +| ...|+
T Consensus 499 ~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH-~~gVn 577 (603)
T KOG0318|consen 499 GAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH-LGGVN 577 (603)
T ss_pred CcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc-ccCce
Confidence 77999999999999999987655556677899999999999999999999999999999998754433344 56 77799
Q ss_pred EEEECCCCCEEEEeccCccC
Q 020454 306 SIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 306 ~l~~~p~~~~l~s~s~D~~~ 325 (326)
.+.|- +...|++.|.|-.+
T Consensus 578 ~v~wl-de~tvvSsG~Da~i 596 (603)
T KOG0318|consen 578 SVAWL-DESTVVSSGQDANI 596 (603)
T ss_pred eEEEe-cCceEEeccCccee
Confidence 99996 45578888888654
No 36
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.4e-29 Score=186.57 Aligned_cols=266 Identities=14% Similarity=0.135 Sum_probs=216.3
Q ss_pred CCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454 12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (326)
Q Consensus 12 ~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~ 91 (326)
|..-++++|+.++.++||+++.. ++...+....+...+..++|.+. ..++|++++.|.+|++||...++....+
T Consensus 30 ~~g~~lasgs~dktv~v~n~e~~-----r~~~~~~~~gh~~svdql~w~~~-~~d~~atas~dk~ir~wd~r~~k~~~~i 103 (313)
T KOG1407|consen 30 CDGTKLASGSFDKTVSVWNLERD-----RFRKELVYRGHTDSVDQLCWDPK-HPDLFATASGDKTIRIWDIRSGKCTARI 103 (313)
T ss_pred ccCceeeecccCCceEEEEecch-----hhhhhhcccCCCcchhhheeCCC-CCcceEEecCCceEEEEEeccCcEEEEe
Confidence 44578999999999999999976 45445555555555556666544 3457999999999999999999987777
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 171 (326)
.. .. +.+. +.+.+ ++++++++..|..|.+.|..... .+...+ ....+.-+.|+
T Consensus 104 ~~-------~~-eni~-i~wsp--------~g~~~~~~~kdD~it~id~r~~~--------~~~~~~--~~~e~ne~~w~ 156 (313)
T KOG1407|consen 104 ET-------KG-ENIN-ITWSP--------DGEYIAVGNKDDRITFIDARTYK--------IVNEEQ--FKFEVNEISWN 156 (313)
T ss_pred ec-------cC-cceE-EEEcC--------CCCEEEEecCcccEEEEEecccc--------eeehhc--ccceeeeeeec
Confidence 64 22 3344 55555 78899999999999999976543 111111 13457778888
Q ss_pred CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce
Q 020454 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (326)
Q Consensus 172 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 251 (326)
.+++++......|.|.|.....-+++..++.|+.+++ ++.|.| +|++||+|+.|-.+.+||+... -++
T Consensus 157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCi---------cI~f~p--~GryfA~GsADAlvSLWD~~EL-iC~ 224 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCI---------CIEFDP--DGRYFATGSADALVSLWDVDEL-ICE 224 (313)
T ss_pred CCCCEEEEecCCceEEEEeccccccccccccCCcceE---------EEEECC--CCceEeeccccceeeccChhHh-hhh
Confidence 7777776666779999999999999999998886653 789988 7889999999999999999976 678
Q ss_pred eEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 252 ~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
+.+.-++-+|+.+.|+.+|++||+|++|..|-|=++++|..+..++ +.++-..++|||...+||-++.|+.
T Consensus 225 R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 225 RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--ccCCceeEEecCCCceeeEEecCCC
Confidence 8998899999999999999999999999999999999999999988 5999999999999999999988864
No 37
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.8e-29 Score=215.13 Aligned_cols=269 Identities=15% Similarity=0.195 Sum_probs=212.1
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEec-cccceeeeecc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP-LNGDLRVAISN 93 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~-~~~~~~~~~~~ 93 (326)
..+++++.++.+++|+...... .+.... ..+...+..++|..+. .++++++.|++|+|||+ ..+..+..+.
T Consensus 172 ~~l~~~~~~~~i~~~~~~~~~~---~~~~~l--~~h~~~v~~~~fs~d~--~~l~s~s~D~tiriwd~~~~~~~~~~l~- 243 (456)
T KOG0266|consen 172 RALAAASSDGLIRIWKLEGIKS---NLLREL--SGHTRGVSDVAFSPDG--SYLLSGSDDKTLRIWDLKDDGRNLKTLK- 243 (456)
T ss_pred CeEEEccCCCcEEEeecccccc---hhhccc--cccccceeeeEECCCC--cEEEEecCCceEEEeeccCCCeEEEEec-
Confidence 4488999999999999965511 122222 3455566666665444 48999999999999999 4446666665
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (326)
.|...|.++.+.+ .++.+++|+.|+.|++|++.... .++.+.. +.+.|.+++|+++
T Consensus 244 -------gH~~~v~~~~f~p--------~g~~i~Sgs~D~tvriWd~~~~~--------~~~~l~~-hs~~is~~~f~~d 299 (456)
T KOG0266|consen 244 -------GHSTYVTSVAFSP--------DGNLLVSGSDDGTVRIWDVRTGE--------CVRKLKG-HSDGISGLAFSPD 299 (456)
T ss_pred -------CCCCceEEEEecC--------CCCEEEEecCCCcEEEEeccCCe--------EEEeeec-cCCceEEEEECCC
Confidence 6778999999766 55799999999999999987633 5566664 4679999999999
Q ss_pred CCEEEEecCCCeEEEEECCCcee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 251 (326)
+++|++++.|+.|++||+.++.. +..+..+... ..++.+.|+| ++.++++++.|+.+++||++.. ...
T Consensus 300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~~fsp--~~~~ll~~~~d~~~~~w~l~~~-~~~ 369 (456)
T KOG0266|consen 300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS-------APVTSVQFSP--NGKYLLSASLDRTLKLWDLRSG-KSV 369 (456)
T ss_pred CCEEEEcCCCccEEEEECCCCceeeeecccCCCCC-------CceeEEEECC--CCcEEEEecCCCeEEEEEccCC-cce
Confidence 99999999999999999999883 4444433211 1588999998 5679999999999999999977 557
Q ss_pred eEEeecCCc---eEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec--cCccC
Q 020454 252 MSFDFRETP---IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--FLEAA 325 (326)
Q Consensus 252 ~~~~~~~~~---i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s--~D~~~ 325 (326)
..+..|... +.+...++.+.++++|+.|+.|++||+.++..+..+.+|-...+..+.++|..+++++++ .|+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~ 448 (456)
T KOG0266|consen 370 GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLI 448 (456)
T ss_pred eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceE
Confidence 777777663 444455778999999999999999999999999999986467889999999999999998 56543
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.4e-29 Score=184.57 Aligned_cols=256 Identities=13% Similarity=0.109 Sum_probs=204.6
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~ 95 (326)
-.+|++.|-+||+|+...+ .++.+|..+.+...-.+.+++. ..+++|+.|..|.+||+++|+..+.+.
T Consensus 31 Y~ltcGsdrtvrLWNp~rg-----~liktYsghG~EVlD~~~s~Dn----skf~s~GgDk~v~vwDV~TGkv~Rr~r--- 98 (307)
T KOG0316|consen 31 YCLTCGSDRTVRLWNPLRG-----ALIKTYSGHGHEVLDAALSSDN----SKFASCGGDKAVQVWDVNTGKVDRRFR--- 98 (307)
T ss_pred EEEEcCCCceEEeeccccc-----ceeeeecCCCceeeeccccccc----cccccCCCCceEEEEEcccCeeeeecc---
Confidence 4789999999999999988 7777887665554434444332 248999999999999999999988887
Q ss_pred CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC
Q 020454 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (326)
Q Consensus 96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (326)
.|.+.|..+.+.. ....+++++.|..+++||-+... -.++.+++.. ...|.++.+. +.
T Consensus 99 -----gH~aqVNtV~fNe--------esSVv~SgsfD~s~r~wDCRS~s------~ePiQildea-~D~V~Si~v~--~h 156 (307)
T KOG0316|consen 99 -----GHLAQVNTVRFNE--------ESSVVASGSFDSSVRLWDCRSRS------FEPIQILDEA-KDGVSSIDVA--EH 156 (307)
T ss_pred -----cccceeeEEEecC--------cceEEEeccccceeEEEEcccCC------CCccchhhhh-cCceeEEEec--cc
Confidence 6668888777543 45678999999999999976543 2356666532 4568888774 68
Q ss_pred EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe
Q 020454 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD 255 (326)
Q Consensus 176 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 255 (326)
.|+.|+.||+++.||++.++......++ +|++++|++ +++..++++.|+++++.|-.++ +.+.+++
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~sDy~g~-----------pit~vs~s~--d~nc~La~~l~stlrLlDk~tG-klL~sYk 222 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLSSDYFGH-----------PITSVSFSK--DGNCSLASSLDSTLRLLDKETG-KLLKSYK 222 (307)
T ss_pred EEEeeccCCcEEEEEeecceeehhhcCC-----------cceeEEecC--CCCEEEEeeccceeeecccchh-HHHHHhc
Confidence 8999999999999999998876665553 488999997 6778999999999999999988 6678888
Q ss_pred ecCCceE--EEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecce-EEEEEECCCCCEEEEec
Q 020454 256 FRETPIK--AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS-IRSIARHPTLPIIASCG 320 (326)
Q Consensus 256 ~~~~~i~--~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~-v~~l~~~p~~~~l~s~s 320 (326)
+|...-. ..+++.....+++|++||.|++||+.....+..++.+ ... |.+++++|...-++++.
T Consensus 223 Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~-~~v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 223 GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV-STVIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccC-CceeEEeeecccCccceeEec
Confidence 8765332 3367777889999999999999999999999999976 666 89999999776655554
No 39
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.6e-29 Score=206.62 Aligned_cols=264 Identities=14% Similarity=0.120 Sum_probs=211.5
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~ 95 (326)
.+++.+..-.|.+|+...+ .+..-.... ...+..+ .+..++.+|++|..+|.|.|||..+.+.+..+..
T Consensus 189 n~laValg~~vylW~~~s~-----~v~~l~~~~--~~~vtSv--~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-- 257 (484)
T KOG0305|consen 189 NVLAVALGQSVYLWSASSG-----SVTELCSFG--EELVTSV--KWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-- 257 (484)
T ss_pred CeEEEEecceEEEEecCCC-----ceEEeEecC--CCceEEE--EECCCCCEEEEeecCCeEEEEehhhccccccccC--
Confidence 3566666668999999877 222111111 3343444 4456677999999999999999987776666653
Q ss_pred CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC
Q 020454 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (326)
Q Consensus 96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (326)
.|...|-++++ ....+.+|+.++.|..+|++....... . ...|...|..++|+++++
T Consensus 258 -----~h~~rvg~laW----------~~~~lssGsr~~~I~~~dvR~~~~~~~-------~-~~~H~qeVCgLkws~d~~ 314 (484)
T KOG0305|consen 258 -----SHASRVGSLAW----------NSSVLSSGSRDGKILNHDVRISQHVVS-------T-LQGHRQEVCGLKWSPDGN 314 (484)
T ss_pred -----CcCceeEEEec----------cCceEEEecCCCcEEEEEEecchhhhh-------h-hhcccceeeeeEECCCCC
Confidence 36688998997 567899999999999999987654221 1 224578999999999999
Q ss_pred EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe--CCCeEEEEeCCCCCCceeE
Q 020454 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 176 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~ 253 (326)
++|+|+.|+.+.|||....++++.+..|. ..|.+++|+|-..+ +||+|+ .|+.|++||..++ ..+..
T Consensus 315 ~lASGgnDN~~~Iwd~~~~~p~~~~~~H~---------aAVKA~awcP~q~~-lLAsGGGs~D~~i~fwn~~~g-~~i~~ 383 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLSPEPKFTFTEHT---------AAVKALAWCPWQSG-LLATGGGSADRCIKFWNTNTG-ARIDS 383 (484)
T ss_pred eeccCCCccceEeccCCCccccEEEeccc---------eeeeEeeeCCCccC-ceEEcCCCcccEEEEEEcCCC-cEecc
Confidence 99999999999999998888888877765 66889999997555 899874 6999999999987 55666
Q ss_pred EeecCCceEEEEecCCCCeEE--EEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454 254 FDFRETPIKAVAEEPDSFNIY--IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 254 ~~~~~~~i~~v~~s~~~~~l~--~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
+... +.|+++.|++..+-|+ .|..++.|.||+..+.+++..+.+| ..+|..++++|++..|++|+.|++++
T Consensus 384 vdtg-sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH-~~RVl~la~SPdg~~i~t~a~DETlr 456 (484)
T KOG0305|consen 384 VDTG-SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH-TSRVLYLALSPDGETIVTGAADETLR 456 (484)
T ss_pred cccC-CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC-cceeEEEEECCCCCEEEEecccCcEE
Confidence 6544 7899999999987676 4556789999999999999999998 99999999999999999999999763
No 40
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=4.9e-30 Score=206.74 Aligned_cols=267 Identities=16% Similarity=0.177 Sum_probs=202.0
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++++.||.|+||++... .+.+.+|..+..++ -.++|. +.+..+++++-|+.|++||+++|+.+..+..
T Consensus 228 hLlLS~gmD~~vklW~vy~~----~~~lrtf~gH~k~V--rd~~~s--~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~- 298 (503)
T KOG0282|consen 228 HLLLSGGMDGLVKLWNVYDD----RRCLRTFKGHRKPV--RDASFN--NCGTSFLSASFDRFLKLWDTETGQVLSRFHL- 298 (503)
T ss_pred eEEEecCCCceEEEEEEecC----cceehhhhcchhhh--hhhhcc--ccCCeeeeeecceeeeeeccccceEEEEEec-
Confidence 45899999999999998763 14555666544443 344443 3444699999999999999999999888876
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
+.+.....+++. +.+.+++|..|+.|+.||++..+. +..++ ++-+.|..+.|-+++
T Consensus 299 ---------~~~~~cvkf~pd------~~n~fl~G~sd~ki~~wDiRs~kv--------vqeYd-~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 299 ---------DKVPTCVKFHPD------NQNIFLVGGSDKKIRQWDIRSGKV--------VQEYD-RHLGAILDITFVDEG 354 (503)
T ss_pred ---------CCCceeeecCCC------CCcEEEEecCCCcEEEEeccchHH--------HHHHH-hhhhheeeeEEccCC
Confidence 333333334422 237899999999999999887652 22222 235688999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC--cee
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVM 252 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~ 252 (326)
+.+++.+.|+.++||+.+.+.++.....+.. ....++..+| .+.+++.-+.|+.|.+|.+....+ .-.
T Consensus 355 ~rFissSDdks~riWe~~~~v~ik~i~~~~~--------hsmP~~~~~P--~~~~~~aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIPVPIKNIADPEM--------HTMPCLTLHP--NGKWFAAQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred ceEeeeccCccEEEEEcCCCccchhhcchhh--------ccCcceecCC--CCCeehhhccCceEEEEecccccccCHhh
Confidence 9999999999999999987766544322211 1234667787 455999999999999999663211 123
Q ss_pred EEeecC--CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC-CEEEEeccCccC
Q 020454 253 SFDFRE--TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGFLEAA 325 (326)
Q Consensus 253 ~~~~~~--~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~s~s~D~~~ 325 (326)
.|++|. +.-..+.|||||++|++|+.||.+.+||.++-+++..+++| .+++..+.|+|.. ..+||||.||.+
T Consensus 425 ~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e~Skvat~~w~G~I 499 (503)
T KOG0282|consen 425 RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQPCIGVDWHPVEPSKVATCGWDGLI 499 (503)
T ss_pred hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-CcceEEEEecCCCcceeEecccCcee
Confidence 455553 34456799999999999999999999999999999999998 9999999999954 589999999975
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.7e-28 Score=212.20 Aligned_cols=231 Identities=18% Similarity=0.205 Sum_probs=190.7
Q ss_pred eeCCCCCeEEEEecCCcEEEEeccccc--eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEE
Q 020454 60 DDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM 137 (326)
Q Consensus 60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i 137 (326)
.-+..+.++++++.|+.+++|+....+ ....+ ..|...|.++.+.+ ++..+++++.|+++++
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l--------~~h~~~v~~~~fs~--------d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL--------SGHTRGVSDVAFSP--------DGSYLLSGSDDKTLRI 229 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccchhhccc--------cccccceeeeEECC--------CCcEEEEecCCceEEE
Confidence 345566689999999999999996665 33332 16678899999876 6679999999999999
Q ss_pred EEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCcee
Q 020454 138 RSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT 217 (326)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 217 (326)
||+.... ..++... .|...|++++|+|+++++++|+.|++|+|||+++++++..++.|. ..|+
T Consensus 230 wd~~~~~-------~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs---------~~is 292 (456)
T KOG0266|consen 230 WDLKDDG-------RNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS---------DGIS 292 (456)
T ss_pred eeccCCC-------eEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC---------CceE
Confidence 9983321 2556666 678899999999999999999999999999999999999988876 5688
Q ss_pred eeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-ceeEEeecCC--ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEE
Q 020454 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRET--PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG 294 (326)
Q Consensus 218 ~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~--~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~ 294 (326)
+++|.+ ++++|++++.|+.|++||+.++.. ++..+..++. ++++++|+|++.++++++.|+.+++||++.++.+.
T Consensus 293 ~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~ 370 (456)
T KOG0266|consen 293 GLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG 370 (456)
T ss_pred EEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCccee
Confidence 999988 667999999999999999998732 3455555544 49999999999999999999999999999999999
Q ss_pred EEcceecc--eEEEEEECCCCCEEEEeccCccC
Q 020454 295 CFIGKCSG--SIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 295 ~~~~~~~~--~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.+.+|..+ .+.+...++.++++++++.|+.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v 403 (456)
T KOG0266|consen 371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSV 403 (456)
T ss_pred eecccCCcceeEecccccCCCCeEEEEeCCceE
Confidence 99998333 34444557899999999999875
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.3e-30 Score=200.97 Aligned_cols=223 Identities=13% Similarity=0.192 Sum_probs=183.5
Q ss_pred CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (326)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~ 130 (326)
...+.++.+++. .+++|..|++|+|||..+...+..+. +|.+.|.++.+ +...+++|+
T Consensus 197 skgVYClQYDD~----kiVSGlrDnTikiWD~n~~~c~~~L~--------GHtGSVLCLqy----------d~rviisGS 254 (499)
T KOG0281|consen 197 SKGVYCLQYDDE----KIVSGLRDNTIKIWDKNSLECLKILT--------GHTGSVLCLQY----------DERVIVSGS 254 (499)
T ss_pred CCceEEEEecch----hhhcccccCceEEeccccHHHHHhhh--------cCCCcEEeeec----------cceEEEecC
Confidence 445555555433 58999999999999997766655544 78899999997 557899999
Q ss_pred cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceee---eeecCCCCCC
Q 020454 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI---WTAKPPPKNS 207 (326)
Q Consensus 131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~---~~~~~~~~~~ 207 (326)
.|.+|++||++..+ +++.+ ..+.+.|..+.|+ ..++++++.|.+|.+||+.....+ ..+.+|.
T Consensus 255 SDsTvrvWDv~tge--------~l~tl-ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr--- 320 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGE--------PLNTL-IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR--- 320 (499)
T ss_pred CCceEEEEeccCCc--------hhhHH-hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh---
Confidence 99999999988755 22222 2456788889996 589999999999999999865422 2233433
Q ss_pred CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (326)
Q Consensus 208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~ 287 (326)
..|+.+.|. .+++++++.|.+|++|++.+. ..+.++.+|...|-|+.+ .++++++|+.|.+|++||+
T Consensus 321 ------AaVNvVdfd----~kyIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 321 ------AAVNVVDFD----DKYIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred ------hheeeeccc----cceEEEecCCceEEEEeccce-eeehhhhcccccceehhc--cCeEEEecCCCceEEEEec
Confidence 567888885 349999999999999999988 679999999999999887 6899999999999999999
Q ss_pred CCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 288 RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 288 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..|.++..++|| +.-|+++.| +.+.|++|+.||.+
T Consensus 388 ~~G~cLRvLeGH-EeLvRciRF--d~krIVSGaYDGki 422 (499)
T KOG0281|consen 388 ECGACLRVLEGH-EELVRCIRF--DNKRIVSGAYDGKI 422 (499)
T ss_pred cccHHHHHHhch-HHhhhheee--cCceeeeccccceE
Confidence 999999999998 999999999 56789999999975
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1e-27 Score=221.98 Aligned_cols=261 Identities=17% Similarity=0.163 Sum_probs=195.7
Q ss_pred cccEEEEEecCCcCCCcceeeec--cC-CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce----ee-eeccc
Q 020454 23 LGLIKVIEARGEHGGVPKVVERW--GD-PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL----RV-AISNA 94 (326)
Q Consensus 23 ~G~i~vw~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~----~~-~~~~~ 94 (326)
+|..++|+...- ++.... ++ ..+...+.+++|. +++++|++|+.|+.|+||+...... .. .....
T Consensus 457 ~gl~~~~~~~~~-----~~~~~~~~~~~~~~~~~V~~i~fs--~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~ 529 (793)
T PLN00181 457 EGLCKYLSFSKL-----RVKADLKQGDLLNSSNLVCAIGFD--RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL 529 (793)
T ss_pred hhhhhhhcccce-----EEEEeeccccccCCCCcEEEEEEC--CCCCEEEEEeCCCEEEEEECCcccccccccccceEEe
Confidence 678888887754 221111 11 1234455566665 4566999999999999999753210 00 00000
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-C
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S 173 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 173 (326)
.+...+.++.+.+. ....+++++.||.|++||+.... .+..+. .+...|.+++|+| +
T Consensus 530 ------~~~~~v~~l~~~~~-------~~~~las~~~Dg~v~lWd~~~~~--------~~~~~~-~H~~~V~~l~~~p~~ 587 (793)
T PLN00181 530 ------ASRSKLSGICWNSY-------IKSQVASSNFEGVVQVWDVARSQ--------LVTEMK-EHEKRVWSIDYSSAD 587 (793)
T ss_pred ------cccCceeeEEeccC-------CCCEEEEEeCCCeEEEEECCCCe--------EEEEec-CCCCCEEEEEEcCCC
Confidence 12245666765431 24689999999999999976432 333333 4567899999997 6
Q ss_pred CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 253 (326)
+.+|++|+.|+.|++||++++..+..+..+ ..+.++.|.+. ++.+|++|+.||.|++||++....++..
T Consensus 588 ~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~----------~~v~~v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~ 656 (793)
T PLN00181 588 PTLLASGSDDGSVKLWSINQGVSIGTIKTK----------ANICCVQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCT 656 (793)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEecC----------CCeEEEEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceE
Confidence 799999999999999999988777665432 23778888764 5779999999999999999976556778
Q ss_pred EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC------CeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~------~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+..|...|.++.|. ++.+|++++.|+.|++||++. .+++..+.+| ...+..++|+|++++|++|+.|+.+
T Consensus 657 ~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh-~~~i~~v~~s~~~~~lasgs~D~~v 732 (793)
T PLN00181 657 MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH-TNVKNFVGLSVSDGYIATGSETNEV 732 (793)
T ss_pred ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC-CCCeeEEEEcCCCCEEEEEeCCCEE
Confidence 88899999999997 788999999999999999974 3577889998 9999999999999999999999875
No 44
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.9e-29 Score=184.29 Aligned_cols=264 Identities=12% Similarity=0.162 Sum_probs=199.2
Q ss_pred CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCC
Q 020454 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP 101 (326)
Q Consensus 22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 101 (326)
.+|.+.|.++... .++. .+..+ .-..++..++|....+ +.+++++.||+++|||+.... ..+..+ +.
T Consensus 36 G~G~L~ile~~~~-~gi~-e~~s~---d~~D~LfdV~Wse~~e-~~~~~a~GDGSLrl~d~~~~s--~Pi~~~-----kE 102 (311)
T KOG0277|consen 36 GNGRLFILEVTDP-KGIQ-ECQSY---DTEDGLFDVAWSENHE-NQVIAASGDGSLRLFDLTMPS--KPIHKF-----KE 102 (311)
T ss_pred cCceEEEEecCCC-CCeE-EEEee---ecccceeEeeecCCCc-ceEEEEecCceEEEeccCCCC--cchhHH-----Hh
Confidence 3577888888643 3333 22233 3445667777765544 368999999999999964222 233332 25
Q ss_pred CCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC-CCEEEEe
Q 020454 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFG 180 (326)
Q Consensus 102 ~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg 180 (326)
|...|.++.+-.. ....+++++-|++|++|+.+..+ .++.++ .+...|+...|+|. .++++++
T Consensus 103 H~~EV~Svdwn~~-------~r~~~ltsSWD~TiKLW~~~r~~--------Sv~Tf~-gh~~~Iy~a~~sp~~~nlfas~ 166 (311)
T KOG0277|consen 103 HKREVYSVDWNTV-------RRRIFLTSSWDGTIKLWDPNRPN--------SVQTFN-GHNSCIYQAAFSPHIPNLFASA 166 (311)
T ss_pred hhhheEEeccccc-------cceeEEeeccCCceEeecCCCCc--------ceEeec-CCccEEEEEecCCCCCCeEEEc
Confidence 6678888876442 23567888999999999977655 455555 35678999999996 5999999
Q ss_pred cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCc
Q 020454 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (326)
Q Consensus 181 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 260 (326)
+.|+++++||++..-....+..|. ..+.++.|+.. +.+.+++|+.|+.|+.||+|+.+.|+..+.+|...
T Consensus 167 Sgd~~l~lwdvr~~gk~~~i~ah~---------~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A 236 (311)
T KOG0277|consen 167 SGDGTLRLWDVRSPGKFMSIEAHN---------SEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA 236 (311)
T ss_pred cCCceEEEEEecCCCceeEEEecc---------ceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence 999999999998643333344443 23667788765 45699999999999999999998999999999999
Q ss_pred eEEEEecCC-CCeEEEEcCCCcEEEEECCCC-eEEEEEcceecceEEEEEECC-CCCEEEEeccCccC
Q 020454 261 IKAVAEEPD-SFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHP-TLPIIASCGFLEAA 325 (326)
Q Consensus 261 i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p-~~~~l~s~s~D~~~ 325 (326)
|+.+.|||. ...|++++.|=+++|||...+ ..+.++.-| ..-|..++|++ +..++|++|.|+.+
T Consensus 237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H-tEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 237 VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH-TEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc-ceEEeccccccccCceeeecccccce
Confidence 999999997 467789999999999999854 445556655 99999999997 66799999999864
No 45
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=194.34 Aligned_cols=254 Identities=33% Similarity=0.546 Sum_probs=208.9
Q ss_pred EEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC
Q 020454 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (326)
Q Consensus 54 ~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g 133 (326)
+..++|....+...|...+.|..+..+.++...+....... ..+..+.++|.+++. .++.|++|..+|
T Consensus 58 is~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~--~~~~l~~~~I~gl~~----------~dg~Litc~~sG 125 (412)
T KOG3881|consen 58 ISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDA--KTVSLGTKSIKGLKL----------ADGTLITCVSSG 125 (412)
T ss_pred hhhheeecCCceeEeeccccCcccccccccCCccccccccc--cccccccccccchhh----------cCCEEEEEecCC
Confidence 33455555555555555558888888888777665554111 011255688998887 568999999999
Q ss_pred cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCC--CeEEEEECCCceeeeeecCCCCCCCCc
Q 020454 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (326)
Q Consensus 134 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~ 210 (326)
.+.+|.......- ...+..|.. ...+..|.-++.. .++|+||.. +.+.|||++..++++..++.+.+.+++
T Consensus 126 ~l~~~~~k~~d~h----ss~l~~la~--g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 126 NLQVRHDKSGDLH----SSKLIKLAT--GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL 199 (412)
T ss_pred cEEEEeccCCccc----cccceeeec--CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc
Confidence 9999997754311 223333332 4677888888765 666779999 889999999999999999999999999
Q ss_pred CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~ 290 (326)
+.|.|++++.|.+....+.|++++.-+.|++||++.+++|+.+|...+.+++++...|++++|++|..-|.+..||++++
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence 99999999999987667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEE-EcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454 291 KLLGC-FIGKCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 291 ~~~~~-~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
+.+.. +.+. .+.|++|..+|..++||+||.|++++
T Consensus 280 kl~g~~~kg~-tGsirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 280 KLLGCGLKGI-TGSIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred eeeccccCCc-cCCcceEEEcCCCceEEeeccceeEE
Confidence 99877 7775 99999999999999999999999864
No 46
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-28 Score=180.79 Aligned_cols=229 Identities=18% Similarity=0.206 Sum_probs=185.2
Q ss_pred eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (326)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~ 132 (326)
.+.++.+. ..++|.++++.|.+|++|+...+.+++++. .|...|..++... ++..+.+|+.|
T Consensus 19 aV~avryN--~dGnY~ltcGsdrtvrLWNp~rg~liktYs--------ghG~EVlD~~~s~--------Dnskf~s~GgD 80 (307)
T KOG0316|consen 19 AVRAVRYN--VDGNYCLTCGSDRTVRLWNPLRGALIKTYS--------GHGHEVLDAALSS--------DNSKFASCGGD 80 (307)
T ss_pred ceEEEEEc--cCCCEEEEcCCCceEEeecccccceeeeec--------CCCceeeeccccc--------cccccccCCCC
Confidence 33344443 456699999999999999999999999888 5557787777544 66789999999
Q ss_pred CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCc--eeeeeecCCCCCCCCc
Q 020454 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGI 210 (326)
Q Consensus 133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~ 210 (326)
..+.+||++... .++.|. .|..+|+.++|+.+...+++|+.|..+++||.++. +++..+....
T Consensus 81 k~v~vwDV~TGk--------v~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~------ 145 (307)
T KOG0316|consen 81 KAVQVWDVNTGK--------VDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK------ 145 (307)
T ss_pred ceEEEEEcccCe--------eeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc------
Confidence 999999988654 677787 45789999999999999999999999999999864 3444433322
Q ss_pred CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~ 290 (326)
..|.++... ...+++|+.||++|.||+|.+ + .....-..+|++++|+++++..++++.|+++++.|-.+|
T Consensus 146 ---D~V~Si~v~----~heIvaGS~DGtvRtydiR~G-~--l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 146 ---DGVSSIDVA----EHEIVAGSVDGTVRTYDIRKG-T--LSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred ---CceeEEEec----ccEEEeeccCCcEEEEEeecc-e--eehhhcCCcceeEEecCCCCEEEEeeccceeeecccchh
Confidence 457777765 238999999999999999987 3 233345579999999999999999999999999999999
Q ss_pred eEEEEEcceecceEEEE--EECCCCCEEEEeccCccC
Q 020454 291 KLLGCFIGKCSGSIRSI--ARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 291 ~~~~~~~~~~~~~v~~l--~~~p~~~~l~s~s~D~~~ 325 (326)
++++.++|| ...=..+ +++.....+++||.||.+
T Consensus 216 klL~sYkGh-kn~eykldc~l~qsdthV~sgSEDG~V 251 (307)
T KOG0316|consen 216 KLLKSYKGH-KNMEYKLDCCLNQSDTHVFSGSEDGKV 251 (307)
T ss_pred HHHHHhccc-ccceeeeeeeecccceeEEeccCCceE
Confidence 999999998 6554444 566777899999999964
No 47
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.4e-29 Score=197.36 Aligned_cols=230 Identities=13% Similarity=0.129 Sum_probs=188.4
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc-
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV- 145 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~- 145 (326)
.+++|+.||.|+|||+.+.+....+. .|.+.|.++.. +.+.+++++.|.+|+.|.++....
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~--------AH~G~V~Gi~v----------~~~~~~tvgdDKtvK~wk~~~~p~~ 142 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFK--------AHEGLVRGICV----------TQTSFFTVGDDKTVKQWKIDGPPLH 142 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheee--------cccCceeeEEe----------cccceEEecCCcceeeeeccCCcce
Confidence 58999999999999998888777776 67799999997 447899999999999998654221
Q ss_pred ------------------ccccccceEEEEEccCCCc----------eEEEEEcCCC-CEEEEecCCCeEEEEECCCcee
Q 020454 146 ------------------SAESSCSTVKSWNVCASGT----------IAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK 196 (326)
Q Consensus 146 ------------------~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~ 196 (326)
.-......+.+|+.....+ |.++.|+|.. .+|++++.|+.|.+||++...+
T Consensus 143 tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P 222 (433)
T KOG0268|consen 143 TILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP 222 (433)
T ss_pred eeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc
Confidence 1122344678898765544 6678888865 6788888999999999999988
Q ss_pred eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEE
Q 020454 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG 276 (326)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g 276 (326)
+.++.... .-+.++|+| +...|++++.|..++.||+|....|+..+..|.+.|.+|.|||.|+-+++|
T Consensus 223 l~KVi~~m----------RTN~IswnP--eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 223 LKKVILTM----------RTNTICWNP--EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred cceeeeec----------cccceecCc--cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence 77643221 234779999 455899999999999999998888999999999999999999999999999
Q ss_pred cCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454 277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 277 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
+.|.+|+||..+.+.....+.......|.++.|+.|.++|+|||.|+.++
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCccee
Confidence 99999999999987654444322366899999999999999999999764
No 48
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=192.85 Aligned_cols=265 Identities=13% Similarity=0.143 Sum_probs=199.4
Q ss_pred CCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454 12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (326)
Q Consensus 12 ~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~ 91 (326)
.|.--.+|++. .+.+++..+. +..+.+.+|. ..+.+.+| ..++.+|++|...|.|+|||..+...+..+
T Consensus 38 ~P~d~aVt~S~--rvqly~~~~~--~~~k~~srFk-----~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~iLR~~ 106 (487)
T KOG0310|consen 38 HPYDFAVTSSV--RVQLYSSVTR--SVRKTFSRFK-----DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVILRQL 106 (487)
T ss_pred CCCceEEeccc--EEEEEecchh--hhhhhHHhhc-----cceeEEEe--ecCCeEEEccCCcCcEEEeccccHHHHHHH
Confidence 34444555544 5677887654 3333333333 33444444 456779999999999999997655555555
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 171 (326)
. .|+.++.... |..+ ++..+++|+.|+.+++||++... +...-..+..-|.|.+++
T Consensus 107 ~--------ah~apv~~~~-f~~~------d~t~l~s~sDd~v~k~~d~s~a~---------v~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 107 Y--------AHQAPVHVTK-FSPQ------DNTMLVSGSDDKVVKYWDLSTAY---------VQAELSGHTDYVRCGDIS 162 (487)
T ss_pred h--------hccCceeEEE-eccc------CCeEEEecCCCceEEEEEcCCcE---------EEEEecCCcceeEeeccc
Confidence 5 5667777555 4433 45678888888999999976532 322333567789999999
Q ss_pred CCC-CEEEEecCCCeEEEEECCCc-eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454 172 ISE-KFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (326)
Q Consensus 172 ~~~-~~l~sg~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~ 249 (326)
|.. .+++|||.||.|++||++.. ..+..+ .|..+|..+.|.| .|.++++++ ...|++||+.++.+
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~el----------nhg~pVe~vl~lp--sgs~iasAg-Gn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVEL----------NHGCPVESVLALP--SGSLIASAG-GNSVKVWDLTTGGQ 229 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCceeEEe----------cCCCceeeEEEcC--CCCEEEEcC-CCeEEEEEecCCce
Confidence 965 68999999999999999876 334332 2335688999998 455888877 46899999997767
Q ss_pred ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
.+..+..|...|+|+++..++..|++|+-|+.|++||+.+.+.++.+. ..++|.+++.+|+++.++.|..||.++
T Consensus 230 ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 230 LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred ehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee--cccceeeEEecCCCceEEEecccceee
Confidence 666666688999999999999999999999999999999999999988 488999999999999999999999764
No 49
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=4.3e-28 Score=181.93 Aligned_cols=227 Identities=20% Similarity=0.248 Sum_probs=188.7
Q ss_pred CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcc
Q 020454 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (326)
Q Consensus 62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~ 141 (326)
..++.+|++++.|.+..+|-..+|+.+.++. +|.+.|.++.... ....+++++.|.++++||++
T Consensus 19 N~eGDLlFscaKD~~~~vw~s~nGerlGty~--------GHtGavW~~Did~--------~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 19 NREGDLLFSCAKDSTPTVWYSLNGERLGTYD--------GHTGAVWCCDIDW--------DSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cCCCcEEEEecCCCCceEEEecCCceeeeec--------CCCceEEEEEecC--------CcceeeeccccceeEEEEcC
Confidence 3456799999999999999888999988887 7889999888654 66799999999999999987
Q ss_pred ccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC-----CCeEEEEECCC-------ceeeeeecCCCCCCCC
Q 020454 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDK-------CEKIWTAKPPPKNSLG 209 (326)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-----d~~i~iwd~~~-------~~~~~~~~~~~~~~~~ 209 (326)
... .+..|+. +.+|..+.|++++++++.... .+.|.++|++. .++..++..+.
T Consensus 83 tGk--------~la~~k~--~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~----- 147 (327)
T KOG0643|consen 83 TGK--------QLATWKT--NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD----- 147 (327)
T ss_pred CCc--------EEEEeec--CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-----
Confidence 654 5666665 678999999999998877544 35699999984 33344433322
Q ss_pred cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
..++.+-|.|. ++.|++|..||.|.+||++++.+.+.+.+.|...|+.++++++..++++|+.|.+-++||+++
T Consensus 148 ----skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 148 ----SKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred ----cceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence 45788899984 459999999999999999998777778888999999999999999999999999999999876
Q ss_pred C-------------------------------------------------------eEEEEEcceecceEEEEEECCCCC
Q 020454 290 G-------------------------------------------------------KLLGCFIGKCSGSIRSIARHPTLP 314 (326)
Q Consensus 290 ~-------------------------------------------------------~~~~~~~~~~~~~v~~l~~~p~~~ 314 (326)
. +.+.++++| -++|++++|||+|+
T Consensus 222 l~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-FGPINsvAfhPdGk 300 (327)
T KOG0643|consen 222 LEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-FGPINSVAFHPDGK 300 (327)
T ss_pred eeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc-ccCcceeEECCCCc
Confidence 2 234456677 89999999999999
Q ss_pred EEEEeccCccCC
Q 020454 315 IIASCGFLEAAS 326 (326)
Q Consensus 315 ~l~s~s~D~~~~ 326 (326)
..+|||.||.++
T Consensus 301 sYsSGGEDG~VR 312 (327)
T KOG0643|consen 301 SYSSGGEDGYVR 312 (327)
T ss_pred ccccCCCCceEE
Confidence 999999999874
No 50
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=9.5e-28 Score=195.21 Aligned_cols=290 Identities=14% Similarity=0.106 Sum_probs=206.9
Q ss_pred cccCCCCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc
Q 020454 5 TTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN 84 (326)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 84 (326)
++++++| .|+++|+.|-.|+.||..+-+...... +.-++.+.-.+-.+.+ +..+..|++.+..-..+|+|...
T Consensus 173 l~~Dp~G---aR~~sGs~Dy~v~~wDf~gMdas~~~f--r~l~P~E~h~i~sl~y--s~Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 173 LAVDPSG---ARFVSGSLDYTVKFWDFQGMDASMRSF--RQLQPCETHQINSLQY--SVTGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred eeecCCC---ceeeeccccceEEEEecccccccchhh--hccCcccccccceeee--cCCCCeEEEEecCcceeEEccCC
Confidence 4667777 999999999999999988663333221 1112322222223333 34556788888889999999854
Q ss_pred cceeeeecc---c-CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc
Q 020454 85 GDLRVAISN---A-GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC 160 (326)
Q Consensus 85 ~~~~~~~~~---~-~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~ 160 (326)
-+.....+- + ....-.+|...+.+-.|.+. ..+.+++++.||++++|+++.... ...++...
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~-------~k~~FlT~s~DgtlRiWdv~~~k~-------q~qVik~k 311 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD-------NKEEFLTCSYDGTLRIWDVNNTKS-------QLQVIKTK 311 (641)
T ss_pred ceeeeeeccchhhhhhhccCCceeeeeccccccC-------cccceEEecCCCcEEEEecCCchh-------heeEEeec
Confidence 333222211 0 00001244455565554432 456899999999999999886442 33333332
Q ss_pred C----CCceEEEEEcCCCCEEEEecCCCeEEEEECCCc--eeeeeec-CCCCCCCCcCCCCceeeeEEeecCCCcEEEEE
Q 020454 161 A----SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC--EKIWTAK-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (326)
Q Consensus 161 ~----~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~--~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~ 233 (326)
. .-++..++|++++++||+|..||.|.+|+..+. ++.+.++ .|... ..|++++|++ +|++|++-
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g-------~~Itsi~FS~--dg~~LlSR 382 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG-------QDITSISFSY--DGNYLLSR 382 (641)
T ss_pred cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC-------CceeEEEecc--ccchhhhc
Confidence 2 235889999999999999999999999998543 2333322 22211 3689999998 78899999
Q ss_pred eCCCeEEEEeCCCCCCceeEEee--cCCceEEEEecCCCCeEEEEcC------CCcEEEEECCCCeEEEEEcceecceEE
Q 020454 234 TNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNG------SGDLASVDIRTGKLLGCFIGKCSGSIR 305 (326)
Q Consensus 234 ~~dg~v~iwd~~~~~~~~~~~~~--~~~~i~~v~~s~~~~~l~~g~~------dg~v~iwd~~~~~~~~~~~~~~~~~v~ 305 (326)
+.|+++++||+|..++|+..+.+ ...+-+.++|||+.++|++|+. .|.+.+||..+...++++.-. ...|.
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv 461 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVV 461 (641)
T ss_pred cCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-CceEE
Confidence 99999999999998888877764 3346678899999999998864 468999999999999988765 77899
Q ss_pred EEEECCCCCEEEEeccCccC
Q 020454 306 SIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 306 ~l~~~p~~~~l~s~s~D~~~ 325 (326)
.+.|||.-+.|+.++.||.+
T Consensus 462 ~~~WhpkLNQi~~gsgdG~~ 481 (641)
T KOG0772|consen 462 RCLWHPKLNQIFAGSGDGTA 481 (641)
T ss_pred EEeecchhhheeeecCCCce
Confidence 99999998889999999975
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-27 Score=205.56 Aligned_cols=273 Identities=14% Similarity=0.130 Sum_probs=214.6
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.++++=..|.|++||.+-+ .++.+|.+++.++. ++.| .+..+++++|+.|-.|++|+..+.+++.++.
T Consensus 22 PwILtslHsG~IQlWDYRM~-----tli~rFdeHdGpVR--gv~F--H~~qplFVSGGDDykIkVWnYk~rrclftL~-- 90 (1202)
T KOG0292|consen 22 PWILTSLHSGVIQLWDYRMG-----TLIDRFDEHDGPVR--GVDF--HPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL-- 90 (1202)
T ss_pred CEEEEeecCceeeeehhhhh-----hHHhhhhccCCccc--eeee--cCCCCeEEecCCccEEEEEecccceehhhhc--
Confidence 56899999999999999988 78888888777766 4444 4556699999999999999998888766655
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
+|-+.|..+.+.+ .-.-|++++.|.+|+||++...+ .+.+.. .|.--|.|..|||..
T Consensus 91 ------GHlDYVRt~~FHh--------eyPWIlSASDDQTIrIWNwqsr~--------~iavlt-GHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 91 ------GHLDYVRTVFFHH--------EYPWILSASDDQTIRIWNWQSRK--------CIAVLT-GHNHYVMCAQFHPTE 147 (1202)
T ss_pred ------cccceeEEeeccC--------CCceEEEccCCCeEEEEeccCCc--------eEEEEe-cCceEEEeeccCCcc
Confidence 6678888777655 34689999999999999987655 344443 445679999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecC--------CCC---------CCC---CcCCCCceeeeEEeecCCCcEEEEEe
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKP--------PPK---------NSL---GIFTPTWFTSAAFLSIDDHRKFVAGT 234 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~--------~~~---------~~~---~~~~~~~v~~~~~~p~~~~~~l~~~~ 234 (326)
.++++++.|.+|++||+..-+......+ .+. ... --.|...|+-++|+|.-. ++++|+
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp--liVSG~ 225 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP--LIVSGA 225 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc--eEEecC
Confidence 9999999999999999975322111111 100 000 012456788899999643 999999
Q ss_pred CCCeEEEEeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454 235 NDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (326)
Q Consensus 235 ~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~ 313 (326)
.|..|++|.+...+ -.+-+..+|...|+++-|+|..+.|++.++|++|+|||+...+.+++|+.. .++-+.++-+|..
T Consensus 226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre-ndRFW~laahP~l 304 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE-NDRFWILAAHPEL 304 (1202)
T ss_pred CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc-CCeEEEEEecCCc
Confidence 99999999987542 124456689999999999999999999999999999999999999999865 8899999999999
Q ss_pred CEEEEeccCcc
Q 020454 314 PIIASCGFLEA 324 (326)
Q Consensus 314 ~~l~s~s~D~~ 324 (326)
+++|+|-..|+
T Consensus 305 NLfAAgHDsGm 315 (1202)
T KOG0292|consen 305 NLFAAGHDSGM 315 (1202)
T ss_pred ceeeeecCCce
Confidence 88776654443
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.8e-28 Score=191.41 Aligned_cols=267 Identities=12% Similarity=0.069 Sum_probs=205.5
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.|++++.|-+.-+|++... ...++..+.-.+.. .+..+. |++++++|++++.+..+.+||..+|+....+..
T Consensus 237 kyLAsaSkD~Taiiw~v~~d--~~~kl~~tlvgh~~--~V~yi~--wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~- 309 (519)
T KOG0293|consen 237 KYLASASKDSTAIIWIVVYD--VHFKLKKTLVGHSQ--PVSYIM--WSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS- 309 (519)
T ss_pred eeEeeccCCceEEEEEEecC--cceeeeeeeecccC--ceEEEE--ECCCCCeEEecCchHheeeccCCcchhhhhccc-
Confidence 34777888888889998765 22445444443333 333333 456677999999999999999999998777664
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.....+.+.++++ ++..+++|+.|+.+..|+++.+. +..|+--....|.++++.+||
T Consensus 310 ------~~~~S~~sc~W~p--------Dg~~~V~Gs~dr~i~~wdlDgn~---------~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 310 ------GLGFSVSSCAWCP--------DGFRFVTGSPDRTIIMWDLDGNI---------LGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred ------CcCCCcceeEEcc--------CCceeEecCCCCcEEEecCCcch---------hhcccccccceeEEEEEcCCC
Confidence 3345677788877 67789999999999999987543 445654445679999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
+++++.+.|..|++|+.++......... ...|++.+.+ ++++++++.-.+..+++||+... ..+..+
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr~lise----------~~~its~~iS--~d~k~~LvnL~~qei~LWDl~e~-~lv~kY 433 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDRGLISE----------EQPITSFSIS--KDGKLALVNLQDQEIHLWDLEEN-KLVRKY 433 (519)
T ss_pred cEEEEEecccceeeechhhhhhhccccc----------cCceeEEEEc--CCCcEEEEEcccCeeEEeecchh-hHHHHh
Confidence 9999999999999999876544322221 1347777776 47778888889999999999955 556777
Q ss_pred eecCC---ceEEEEecC-CCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC-CEEEEeccCccCC
Q 020454 255 DFRET---PIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGFLEAAS 326 (326)
Q Consensus 255 ~~~~~---~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~s~s~D~~~~ 326 (326)
.+|.. -|.+ ||-- +..++++|++|+.|+||+..+++++..+.|| ...|++++|+|.. ..+||+|.||+++
T Consensus 434 ~Ghkq~~fiIrS-CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH-s~~vNcVswNP~~p~m~ASasDDgtIR 508 (519)
T KOG0293|consen 434 FGHKQGHFIIRS-CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH-SKTVNCVSWNPADPEMFASASDDGTIR 508 (519)
T ss_pred hcccccceEEEe-ccCCCCcceEEecCCCceEEEEEccCCceeEeecCC-cceeeEEecCCCCHHHhhccCCCCeEE
Confidence 77654 3444 6654 4579999999999999999999999999999 9999999999955 5799999999874
No 53
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3e-28 Score=203.06 Aligned_cols=244 Identities=14% Similarity=0.215 Sum_probs=191.0
Q ss_pred eCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEc
Q 020454 61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (326)
Q Consensus 61 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~ 140 (326)
+.+.+++|++|+.||.|++|+.....-...-... ...+.|...+..+.... .++.+++++.|-+|++|+.
T Consensus 33 da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~--asme~HsDWVNDiiL~~--------~~~tlIS~SsDtTVK~W~~ 102 (735)
T KOG0308|consen 33 DAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYI--ASMEHHSDWVNDIILCG--------NGKTLISASSDTTVKVWNA 102 (735)
T ss_pred cCCCCceEEecCCCceEEEeccccccCCcccchh--hhhhhhHhHHhhHHhhc--------CCCceEEecCCceEEEeec
Confidence 4556668999999999999998633221000000 00135667777777655 5679999999999999997
Q ss_pred cccccccccccceEEEEEccCCCceEEEEE-cCCCCEEEEecCCCeEEEEECCCc--eeeeeecCCCCCCCCcCCCCcee
Q 020454 141 EVTKVSAESSCSTVKSWNVCASGTIAFSKV-DISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFT 217 (326)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~sg~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~ 217 (326)
...... ...+++ .|..-|.|+++ .++..++|+||.|+.|.+||++++ +.+....+.+...+.......|+
T Consensus 103 ~~~~~~---c~stir----~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY 175 (735)
T KOG0308|consen 103 HKDNTF---CMSTIR----THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY 175 (735)
T ss_pred ccCcch---hHhhhh----cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence 754311 111221 24668999999 777899999999999999999987 34444444444433333446789
Q ss_pred eeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 218 ~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
+++..+ .+..|++|+..+.+++||+++. ..+..+.+|...|..+..++||+.+++++.||+|++||+...+++.++.
T Consensus 176 SLA~N~--t~t~ivsGgtek~lr~wDprt~-~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 176 SLAMNQ--TGTIIVSGGTEKDLRLWDPRTC-KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred eeecCC--cceEEEecCcccceEEeccccc-cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 998887 4568999999999999999988 4477888999999999999999999999999999999999999999999
Q ss_pred ceecceEEEEEECCCCCEEEEeccCccC
Q 020454 298 GKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 298 ~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.| ...|+++..+|+-..+.+|+.||.+
T Consensus 253 vH-~e~VWaL~~~~sf~~vYsG~rd~~i 279 (735)
T KOG0308|consen 253 VH-KEGVWALQSSPSFTHVYSGGRDGNI 279 (735)
T ss_pred ec-cCceEEEeeCCCcceEEecCCCCcE
Confidence 98 8889999999999999999999974
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=2.8e-26 Score=187.96 Aligned_cols=234 Identities=17% Similarity=0.251 Sum_probs=188.7
Q ss_pred ceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (326)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~ 131 (326)
..+.++++.+ .+++|++++.||.|++|++.+++....+. .+...+..+.+.+ .+..+++++.
T Consensus 10 ~~i~~~~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--------~~~~~i~~~~~~~--------~~~~l~~~~~ 71 (289)
T cd00200 10 GGVTCVAFSP--DGKLLATGSGDGTIKVWDLETGELLRTLK--------GHTGPVRDVAASA--------DGTYLASGSS 71 (289)
T ss_pred CCEEEEEEcC--CCCEEEEeecCcEEEEEEeeCCCcEEEEe--------cCCcceeEEEECC--------CCCEEEEEcC
Confidence 4455555543 35689999999999999998776544443 3445666677655 4568999999
Q ss_pred CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (326)
+|.+++|++.... .+..+. .+...+.++.++++++++++++.|+.|.+||+++++....+..+.
T Consensus 72 ~~~i~i~~~~~~~--------~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------- 135 (289)
T cd00200 72 DKTIRLWDLETGE--------CVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT------- 135 (289)
T ss_pred CCeEEEEEcCccc--------ceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC-------
Confidence 9999999987532 333333 335589999999999999998889999999999888777665432
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~ 291 (326)
..++++.|+|. +.++++++.++.|++||++.. +++..+..+...+.+++|+|+++.+++++.+|.|++||+++++
T Consensus 136 --~~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 136 --DWVNSVAFSPD--GTFVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred --CcEEEEEEcCc--CCEEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 46889999984 557788777999999999976 5677888888899999999999999999999999999999999
Q ss_pred EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 292 LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 292 ~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.+..+..| ...+.++.|+|++.++++++.||.+
T Consensus 211 ~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~i 243 (289)
T cd00200 211 CLGTLRGH-ENGVNSVAFSPDGYLLASGSEDGTI 243 (289)
T ss_pred eecchhhc-CCceEEEEEcCCCcEEEEEcCCCcE
Confidence 99888777 8899999999999899988878764
No 55
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.7e-26 Score=175.01 Aligned_cols=262 Identities=14% Similarity=0.151 Sum_probs=198.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec--CCcEEEEeccccceeeeec
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDLRVAIS 92 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~--dg~i~i~~~~~~~~~~~~~ 92 (326)
..++++++|..+++||...+ +.......+.... -.++|..... .++.++. |.+||..++.++++++.+.
T Consensus 27 ~~litss~dDsl~LYd~~~g-----~~~~ti~skkyG~--~~~~Fth~~~--~~i~sStk~d~tIryLsl~dNkylRYF~ 97 (311)
T KOG1446|consen 27 LLLITSSEDDSLRLYDSLSG-----KQVKTINSKKYGV--DLACFTHHSN--TVIHSSTKEDDTIRYLSLHDNKYLRYFP 97 (311)
T ss_pred CEEEEecCCCeEEEEEcCCC-----ceeeEeecccccc--cEEEEecCCc--eEEEccCCCCCceEEEEeecCceEEEcC
Confidence 67899999999999999987 4443443333322 2445554444 3555555 8999999999999988877
Q ss_pred ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (326)
Q Consensus 93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (326)
+|...|..|...+ .++.+++++.|++|++||++..+. ..+... ..-...+++|
T Consensus 98 --------GH~~~V~sL~~sP--------~~d~FlS~S~D~tvrLWDlR~~~c--------qg~l~~---~~~pi~AfDp 150 (311)
T KOG1446|consen 98 --------GHKKRVNSLSVSP--------KDDTFLSSSLDKTVRLWDLRVKKC--------QGLLNL---SGRPIAAFDP 150 (311)
T ss_pred --------CCCceEEEEEecC--------CCCeEEecccCCeEEeeEecCCCC--------ceEEec---CCCcceeECC
Confidence 7889999998766 668999999999999999885442 112221 2334578999
Q ss_pred CCCEEEEecCCCeEEEEECCCc--eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 020454 173 SEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (326)
Q Consensus 173 ~~~~l~sg~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~ 250 (326)
+|-++|++.....|++||++.- .+...+.-... .....+.+.|+| +|+.++.++..+.+++.|.-.+ ..
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~------~~~ew~~l~FS~--dGK~iLlsT~~s~~~~lDAf~G-~~ 221 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDN------DEAEWTDLEFSP--DGKSILLSTNASFIYLLDAFDG-TV 221 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCCCCceeEccCCC------CccceeeeEEcC--CCCEEEEEeCCCcEEEEEccCC-cE
Confidence 9999999988889999999863 22222211101 113478899998 7889999999999999998877 45
Q ss_pred eeEEeecCCce---EEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454 251 VMSFDFRETPI---KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 251 ~~~~~~~~~~i---~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
..++..+...- -..+|+||++++++|+.||+|++|++++++.+..+++.+.+++.++.|+|.-..++|++.
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence 66776543322 455899999999999999999999999999999999844899999999998888887763
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=5.1e-27 Score=202.87 Aligned_cols=257 Identities=11% Similarity=0.114 Sum_probs=211.8
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeee-ccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVER-WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~ 93 (326)
..+++++.+..|++|+...+ +.+.. +. .+...+-++.+.. .+++|++|+.|.++++||..+|+....+.
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~-----~~i~~~l~--GH~g~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~sg~C~~~l~- 288 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNG-----YLILTRLV--GHFGGVWGLAFPS--GGDKLVSGSTDKTERVWDCSTGECTHSLQ- 288 (537)
T ss_pred CeEEecCCCceeEEeecccc-----eEEEeecc--CCCCCceeEEEec--CCCEEEEEecCCcEEeEecCCCcEEEEec-
Confidence 46889999999999999877 44444 43 3444555566543 45589999999999999999999988877
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (326)
.|...+.++.. ....+++|+.|.+|++|++.... .+.+... +..+|.++..+
T Consensus 289 -------gh~stv~~~~~----------~~~~~~sgs~D~tVkVW~v~n~~--------~l~l~~~-h~~~V~~v~~~-- 340 (537)
T KOG0274|consen 289 -------GHTSSVRCLTI----------DPFLLVSGSRDNTVKVWDVTNGA--------CLNLLRG-HTGPVNCVQLD-- 340 (537)
T ss_pred -------CCCceEEEEEc----------cCceEeeccCCceEEEEeccCcc--------eEEEecc-ccccEEEEEec--
Confidence 56678887775 44678888999999999988543 4555554 68899999997
Q ss_pred CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 253 (326)
+.++++|+.|++|++||+.+++++..+++|. .+|+++.+.+. ..+++|+.|++|++||+++..+++..
T Consensus 341 ~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~---------~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 341 EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT---------GRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred CCEEEEEecCceEEEEEhhhceeeeeecCCc---------ceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhh
Confidence 8999999999999999999999999998876 67889877642 48999999999999999976467889
Q ss_pred EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+..|..-+..+.+ .+++|++++.||.|++||..++++++.+.+++.+.|..+++. .+.+++++.||.+
T Consensus 409 l~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~ 476 (537)
T KOG0274|consen 409 LQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSV 476 (537)
T ss_pred hcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCee
Confidence 9999888866554 688999999999999999999999999998327899999886 5678888888864
No 57
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.9e-28 Score=207.12 Aligned_cols=234 Identities=14% Similarity=0.172 Sum_probs=196.6
Q ss_pred eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (326)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~ 132 (326)
.+-.++| .+..++++++-.+|.|++||.+-+.++..+. .|+++|.++.+.+ ....+++|+.|
T Consensus 11 RvKglsF--HP~rPwILtslHsG~IQlWDYRM~tli~rFd--------eHdGpVRgv~FH~--------~qplFVSGGDD 72 (1202)
T KOG0292|consen 11 RVKGLSF--HPKRPWILTSLHSGVIQLWDYRMGTLIDRFD--------EHDGPVRGVDFHP--------TQPLFVSGGDD 72 (1202)
T ss_pred cccceec--CCCCCEEEEeecCceeeeehhhhhhHHhhhh--------ccCCccceeeecC--------CCCeEEecCCc
Confidence 3334555 4566799999999999999999998888877 7889999999877 44699999999
Q ss_pred CcEEEEEccccccccccccceEEEEE-ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454 133 GKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 133 g~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (326)
-.|++|++..... ++. ..|-.-|+.+.||+.-.++++++.|.+|+||+..+.+++..+.+|.
T Consensus 73 ykIkVWnYk~rrc----------lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHn------- 135 (1202)
T KOG0292|consen 73 YKIKVWNYKTRRC----------LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHN------- 135 (1202)
T ss_pred cEEEEEeccccee----------hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCc-------
Confidence 9999999876542 111 2345679999999999999999999999999999999999988865
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC----------------------------ceeEEeecCCceEE
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR----------------------------PVMSFDFRETPIKA 263 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~----------------------------~~~~~~~~~~~i~~ 263 (326)
.+|.+.+|+|.++ +++++|-|.+||+||+...++ .-+.+++|+..|+-
T Consensus 136 --HYVMcAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw 211 (1202)
T KOG0292|consen 136 --HYVMCAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW 211 (1202)
T ss_pred --eEEEeeccCCccc--eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccce
Confidence 6799999999755 999999999999999753211 11345688899999
Q ss_pred EEecCCCCeEEEEcCCCcEEEEECCCCeE--EEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454 264 VAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 264 v~~s~~~~~l~~g~~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
++|+|.-..|++|+.|+.|++|.+...+. +-+.++| .+.|.++-|||...+|+|.|.|+.++
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH-~nnVssvlfhp~q~lIlSnsEDksir 275 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGH-YNNVSSVLFHPHQDLILSNSEDKSIR 275 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEeccccceeehhhhcc-cCCcceEEecCccceeEecCCCccEE
Confidence 99999999999999999999999875543 5567898 99999999999999999999999764
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=3.6e-28 Score=192.48 Aligned_cols=263 Identities=15% Similarity=0.149 Sum_probs=199.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-++.+|+.|-.|++|+..++. ..+...... ....+..+.+ +..+.++++++.|+.+++|++...+...++.
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k---~~~~~tLaG--s~g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs-- 258 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEK---SELISTLAG--SLGNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHTLS-- 258 (459)
T ss_pred chhhhcchhhhhhhhhcccch---hhhhhhhhc--cCCCcceeee--cCCCceEEeecCCCceeeeeccchhhhhhhc--
Confidence 468999999999999998761 112222221 2223334444 4455689999999999999999888877766
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.|.+.|+++.++. ....+++++.|.++++||+..... .+..- ....+..+... .
T Consensus 259 ------GHtdkVt~ak~~~--------~~~~vVsgs~DRtiK~WDl~k~~C--------~kt~l--~~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 259 ------GHTDKVTAAKFKL--------SHSRVVSGSADRTIKLWDLQKAYC--------SKTVL--PGSQCNDIVCS--I 312 (459)
T ss_pred ------ccccceeeehhhc--------cccceeeccccchhhhhhhhhhhe--------ecccc--ccccccceEec--c
Confidence 6778999888765 334599999999999999876331 11111 12344445444 5
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
..+++|..|++|+.||+++..+......+ ..|+++..++ ++..+++++.|.++.+.|+++. ...+.+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g----------g~vtSl~ls~--~g~~lLsssRDdtl~viDlRt~-eI~~~~ 379 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLG----------GRVTSLDLSM--DGLELLSSSRDDTLKVIDLRTK-EIRQTF 379 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecC----------cceeeEeecc--CCeEEeeecCCCceeeeecccc-cEEEEe
Confidence 67889999999999999998888775543 3588888887 5678999999999999999976 445555
Q ss_pred eec----CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecc-eEEEEEECCCCCEEEEeccCccC
Q 020454 255 DFR----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG-SIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 255 ~~~----~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
... ....+.+.|||++.|+++|+.||.|+||++.++++...+...... .|++++|+|.|..|++++.++++
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence 432 235788999999999999999999999999999998888754233 69999999999999999998864
No 59
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.1e-26 Score=170.35 Aligned_cols=266 Identities=12% Similarity=0.085 Sum_probs=199.4
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~ 95 (326)
-|++|+.|..||+|+...++. . .+...-+..+.+.+-.+.| ++.+++|++|+.|.++.||.-..+++.. ...+
T Consensus 29 ilAscg~Dk~vriw~~~~~~s--~-~ck~vld~~hkrsVRsvAw--sp~g~~La~aSFD~t~~Iw~k~~~efec-v~~l- 101 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDS--W-TCKTVLDDGHKRSVRSVAW--SPHGRYLASASFDATVVIWKKEDGEFEC-VATL- 101 (312)
T ss_pred EEEeecCCceEEEEecCCCCc--E-EEEEeccccchheeeeeee--cCCCcEEEEeeccceEEEeecCCCceeE-Eeee-
Confidence 699999999999999985311 1 1111222345555544544 5566699999999999999887776633 3322
Q ss_pred CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC
Q 020454 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (326)
Q Consensus 96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (326)
.+|++.|.++++.+ ++++|++|+.|..|-||.+...+.. ..+.+.+ .|.+.|..+.|||...
T Consensus 102 ----EGHEnEVK~Vaws~--------sG~~LATCSRDKSVWiWe~deddEf-----ec~aVL~-~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 102 ----EGHENEVKCVAWSA--------SGNYLATCSRDKSVWIWEIDEDDEF-----ECIAVLQ-EHTQDVKHVIWHPTED 163 (312)
T ss_pred ----eccccceeEEEEcC--------CCCEEEEeeCCCeEEEEEecCCCcE-----EEEeeec-cccccccEEEEcCCcc
Confidence 27789999999877 7789999999999999998754432 1334444 4567899999999999
Q ss_pred EEEEecCCCeEEEEECCC-c--eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454 176 FSLFGGKGVEVNVWDLDK-C--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (326)
Q Consensus 176 ~l~sg~~d~~i~iwd~~~-~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 252 (326)
+|++++.|++|++|+-.. . .++.++.++. ..|-+++|.| .|..|++++.|++|+||-.+..-.
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~---------~TVW~~~F~~--~G~rl~s~sdD~tv~Iw~~~~~~~--- 229 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE---------NTVWSLAFDN--IGSRLVSCSDDGTVSIWRLYTDLS--- 229 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecCcc---------ceEEEEEecC--CCceEEEecCCcceEeeeeccCcc---
Confidence 999999999999999773 2 3566666654 3577899987 466999999999999999774311
Q ss_pred EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC------eEEE-EEcceecceEEEEEECCC-CCEEEEeccCcc
Q 020454 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG------KLLG-CFIGKCSGSIRSIARHPT-LPIIASCGFLEA 324 (326)
Q Consensus 253 ~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~------~~~~-~~~~~~~~~v~~l~~~p~-~~~l~s~s~D~~ 324 (326)
..|..+++.++|. ...|++++.|+.|++|.-... +++. .-..| ...|++++|+|. ..+|++||.||.
T Consensus 230 --~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-e~dVNsV~w~p~~~~~L~s~~DDG~ 304 (312)
T KOG0645|consen 230 --GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-EVDVNSVQWNPKVSNRLASGGDDGI 304 (312)
T ss_pred --hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-ccccceEEEcCCCCCceeecCCCce
Confidence 1366789999997 458999999999999976642 1222 22356 889999999994 679999999997
Q ss_pred C
Q 020454 325 A 325 (326)
Q Consensus 325 ~ 325 (326)
+
T Consensus 305 v 305 (312)
T KOG0645|consen 305 V 305 (312)
T ss_pred E
Confidence 5
No 60
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=8.3e-27 Score=174.48 Aligned_cols=229 Identities=11% Similarity=0.063 Sum_probs=184.7
Q ss_pred eeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454 60 DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (326)
Q Consensus 60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~ 139 (326)
.+...+..|++|+.|+++++|+++..++...... .+|.+.+-.+.+.+++ .+.+++++.|..|++||
T Consensus 27 ~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~------~gh~~svdql~w~~~~-------~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 27 AWNCDGTKLASGSFDKTVSVWNLERDRFRKELVY------RGHTDSVDQLCWDPKH-------PDLFATASGDKTIRIWD 93 (313)
T ss_pred EEcccCceeeecccCCceEEEEecchhhhhhhcc------cCCCcchhhheeCCCC-------CcceEEecCCceEEEEE
Confidence 3445666899999999999999987766555443 2566677778877753 47899999999999999
Q ss_pred ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454 140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (326)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (326)
+..... +... .....=.-+.|+|+|++++.+++|..|...|.++.+.+...+. ...+..+
T Consensus 94 ~r~~k~--------~~~i--~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~----------~~e~ne~ 153 (313)
T KOG1407|consen 94 IRSGKC--------TARI--ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF----------KFEVNEI 153 (313)
T ss_pred eccCcE--------EEEe--eccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc----------cceeeee
Confidence 876442 2221 2233334578999999999999999999999998776554322 1235677
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce
Q 020454 220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (326)
Q Consensus 220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~ 299 (326)
.|+- ++++|+..+..|.|.|...... +|+.+++.|.....|+.|+|+|+++|+|+.|-.+.+||+...-+++.+..+
T Consensus 154 ~w~~--~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl 230 (313)
T KOG1407|consen 154 SWNN--SNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL 230 (313)
T ss_pred eecC--CCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc
Confidence 8873 4458888888899999998876 789999999999999999999999999999999999999988888888876
Q ss_pred ecceEEEEEECCCCCEEEEeccCccC
Q 020454 300 CSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 300 ~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.-+|+.|.|+.+|++||++|.|..+
T Consensus 231 -dwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 231 -DWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred -cCceEEEEeccCcceeeccCccceE
Confidence 9999999999999999999999753
No 61
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.2e-27 Score=176.06 Aligned_cols=220 Identities=15% Similarity=0.178 Sum_probs=177.9
Q ss_pred cCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccc
Q 020454 73 KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS 152 (326)
Q Consensus 73 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~ 152 (326)
.+|++.|.++...+-+.+...+ .-++.+.++++.+ +.++.+++++.||.+++||+... .+
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~------d~~D~LfdV~Wse-------~~e~~~~~a~GDGSLrl~d~~~~-------s~ 95 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSY------DTEDGLFDVAWSE-------NHENQVIAASGDGSLRLFDLTMP-------SK 95 (311)
T ss_pred cCceEEEEecCCCCCeEEEEee------ecccceeEeeecC-------CCcceEEEEecCceEEEeccCCC-------Cc
Confidence 4588999999655555555544 2235677788755 25688999999999999995432 33
Q ss_pred eEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE
Q 020454 153 TVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (326)
Q Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~ 231 (326)
++..|+ .|..+|.++.+++.. ..+++++.|++|++|+...++.+.++.+|. .-|+..+|+|. .+++++
T Consensus 96 Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~---------~~Iy~a~~sp~-~~nlfa 164 (311)
T KOG0277|consen 96 PIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN---------SCIYQAAFSPH-IPNLFA 164 (311)
T ss_pred chhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc---------cEEEEEecCCC-CCCeEE
Confidence 777777 457899999999864 677888999999999999888888877754 55889999997 566999
Q ss_pred EEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCe-EEEEEcceecceEEEEEE
Q 020454 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIAR 309 (326)
Q Consensus 232 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~ 309 (326)
+++.|+++++||++...++ ..+..|...|.++.|+.- .+.+++|+.|+.|+.||++..+ ++..+.+| .-.|+.++|
T Consensus 165 s~Sgd~~l~lwdvr~~gk~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~ 242 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKF-MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKVKF 242 (311)
T ss_pred EccCCceEEEEEecCCCce-eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEEec
Confidence 9999999999999976454 448899999999999874 5677899999999999999754 57788898 999999999
Q ss_pred CCC-CCEEEEeccCccC
Q 020454 310 HPT-LPIIASCGFLEAA 325 (326)
Q Consensus 310 ~p~-~~~l~s~s~D~~~ 325 (326)
+|. ..+|||+|.|-++
T Consensus 243 Sph~~~lLaSasYDmT~ 259 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTV 259 (311)
T ss_pred CcchhhHhhhccccceE
Confidence 994 4689999999654
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=184.17 Aligned_cols=268 Identities=16% Similarity=0.188 Sum_probs=216.6
Q ss_pred eeeeeecCcccEEEEEecCCcCCCccee--eeccCC----CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVV--ERWGDP----HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~ 88 (326)
--|++|+.||.|.||+..++ ++. ..|... -....+++++|.-+ ...|++|+.||.|++|.+++|.++
T Consensus 226 qyLvsgSvDGFiEVWny~~G-----KlrKDLkYQAqd~fMMmd~aVlci~FSRD--sEMlAsGsqDGkIKvWri~tG~Cl 298 (508)
T KOG0275|consen 226 QYLVSGSVDGFIEVWNYTTG-----KLRKDLKYQAQDNFMMMDDAVLCISFSRD--SEMLASGSQDGKIKVWRIETGQCL 298 (508)
T ss_pred ceEeeccccceeeeehhccc-----hhhhhhhhhhhcceeecccceEEEeeccc--HHHhhccCcCCcEEEEEEecchHH
Confidence 56999999999999999877 221 122211 12334555565443 448999999999999999999999
Q ss_pred eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 168 (326)
..+.. .|...|+++.+.. ++..+++++.|-.+++.-+.... .++.++ .+..-|+..
T Consensus 299 RrFdr-------AHtkGvt~l~FSr--------D~SqiLS~sfD~tvRiHGlKSGK--------~LKEfr-GHsSyvn~a 354 (508)
T KOG0275|consen 299 RRFDR-------AHTKGVTCLSFSR--------DNSQILSASFDQTVRIHGLKSGK--------CLKEFR-GHSSYVNEA 354 (508)
T ss_pred HHhhh-------hhccCeeEEEEcc--------CcchhhcccccceEEEeccccch--------hHHHhc-Cccccccce
Confidence 99886 6778899999766 66789999999999999876544 334443 345678899
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC
Q 020454 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (326)
Q Consensus 169 ~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~ 248 (326)
.|.++|+.+++++.||+|++|+..+.+++.+++....+ ..|.++-..|.+ ...+++|...++|+|.++..
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d-------~~vnsv~~~PKn-peh~iVCNrsntv~imn~qG-- 424 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD-------YPVNSVILLPKN-PEHFIVCNRSNTVYIMNMQG-- 424 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc-------ccceeEEEcCCC-CceEEEEcCCCeEEEEeccc--
Confidence 99999999999999999999999999998887765533 358888888864 55899999999999999884
Q ss_pred CceeEEeec---CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 249 RPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 249 ~~~~~~~~~---~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
+.+.++... .+...+.+.+|.|.++++.++|+.++.|...+|++...+..| +..|..++-+|..+.||+-+.||.
T Consensus 425 QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh-EkdvIGl~HHPHqNllAsYsEDgl 502 (508)
T KOG0275|consen 425 QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH-EKDVIGLTHHPHQNLLASYSEDGL 502 (508)
T ss_pred eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc-cccccccccCcccchhhhhcccch
Confidence 457777642 234555589999999999999999999999999999999998 999999999999999999999985
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=6.5e-28 Score=179.39 Aligned_cols=268 Identities=15% Similarity=0.161 Sum_probs=209.0
Q ss_pred CCCCCC-eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce
Q 020454 9 CPGCPP-LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL 87 (326)
Q Consensus 9 ~~~~~~-~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 87 (326)
++-||. +-|+++..||.-.+-+-+++ ..+-+|.. +...+...+... +...-++++.|=+-++||.-+|..
T Consensus 23 s~itp~g~flisa~kd~~pmlr~g~tg-----dwigtfeg--hkgavw~~~l~~--na~~aasaaadftakvw~a~tgde 93 (334)
T KOG0278|consen 23 SPITPDGYFLISASKDGKPMLRNGDTG-----DWIGTFEG--HKGAVWSATLNK--NATRAASAAADFTAKVWDAVTGDE 93 (334)
T ss_pred cCCCCCceEEEEeccCCCchhccCCCC-----CcEEeeec--cCcceeeeecCc--hhhhhhhhcccchhhhhhhhhhhh
Confidence 345565 77889999998888777766 44445542 333444444332 223568889999999999999987
Q ss_pred eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEE
Q 020454 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 167 (326)
+..+.. ..-|..+++.. +.++|++++.+..+++++++..+.. .+.+. .+.+.|..
T Consensus 94 lhsf~h---------khivk~~af~~--------ds~~lltgg~ekllrvfdln~p~Ap-------p~E~~-ghtg~Ir~ 148 (334)
T KOG0278|consen 94 LHSFEH---------KHIVKAVAFSQ--------DSNYLLTGGQEKLLRVFDLNRPKAP-------PKEIS-GHTGGIRT 148 (334)
T ss_pred hhhhhh---------hheeeeEEecc--------cchhhhccchHHHhhhhhccCCCCC-------chhhc-CCCCccee
Confidence 777654 24566677654 6789999999999999999876532 11111 23567888
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (326)
Q Consensus 168 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~ 247 (326)
+-|....+.|+++..|++||+||.+++..+..+.. +..|+++..++ +| .+++....+.|.+||..+.
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~----------~s~VtSlEvs~--dG-~ilTia~gssV~Fwdaksf 215 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF----------NSPVTSLEVSQ--DG-RILTIAYGSSVKFWDAKSF 215 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCcEEEEEec----------CCCCcceeecc--CC-CEEEEecCceeEEeccccc
Confidence 88888888888989999999999999998877543 34578888887 55 5677777889999999987
Q ss_pred CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE-cceecceEEEEEECCCCCEEEEeccCccCC
Q 020454 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 248 ~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
.+++.++.. ..|.+.+++|+...+++|+.|..++.||..+++.+..+ ++| .++|.++.|+|+|...++||.||+++
T Consensus 216 -~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-~gpVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 216 -GLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-FGPVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred -cceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC-CCceEEEEECCCCceeeccCCCceEE
Confidence 567777665 56888899999999999999999999999999999887 788 99999999999999999999999863
No 64
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2.5e-25 Score=192.05 Aligned_cols=261 Identities=13% Similarity=0.148 Sum_probs=183.0
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccC-----------CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGD-----------PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL 83 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~ 83 (326)
-.++++..+.....|+..++ ..+....+ ..+...+..+.|... ++.+|++|+.||+|++||+.
T Consensus 33 ~~~~~~n~~~~a~~w~~~gg-----~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-d~~~LaSgS~DgtIkIWdi~ 106 (493)
T PTZ00421 33 SNTIACNDRFIAVPWQQLGS-----TAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-DPQKLFTASEDGTIMGWGIP 106 (493)
T ss_pred CCcEeECCceEEEEEecCCc-----eEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-CCCEEEEEeCCCEEEEEecC
Confidence 45788888888888887654 11111110 123445556666431 34589999999999999997
Q ss_pred ccceee----eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc
Q 020454 84 NGDLRV----AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV 159 (326)
Q Consensus 84 ~~~~~~----~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~ 159 (326)
++.... .+..+ ..|...|.++.+.+. ..+.|++++.|+.|++||++... .+..+.
T Consensus 107 ~~~~~~~~~~~l~~L-----~gH~~~V~~l~f~P~-------~~~iLaSgs~DgtVrIWDl~tg~--------~~~~l~- 165 (493)
T PTZ00421 107 EEGLTQNISDPIVHL-----QGHTKKVGIVSFHPS-------AMNVLASAGADMVVNVWDVERGK--------AVEVIK- 165 (493)
T ss_pred CCccccccCcceEEe-----cCCCCcEEEEEeCcC-------CCCEEEEEeCCCEEEEEECCCCe--------EEEEEc-
Confidence 653211 11111 256688988887541 23589999999999999987533 233333
Q ss_pred cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe----C
Q 020454 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT----N 235 (326)
Q Consensus 160 ~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~----~ 235 (326)
.+...|.+++|+|++++|++++.|+.|++||+++++.+..+..|... .+..+.|.+. +..+++++ .
T Consensus 166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~--------~~~~~~w~~~--~~~ivt~G~s~s~ 235 (493)
T PTZ00421 166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA--------KSQRCLWAKR--KDLIITLGCSKSQ 235 (493)
T ss_pred CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC--------cceEEEEcCC--CCeEEEEecCCCC
Confidence 34678999999999999999999999999999999888777665422 1335667764 23555543 5
Q ss_pred CCeEEEEeCCCCCCceeEEeecC-CceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454 236 DHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 236 dg~v~iwd~~~~~~~~~~~~~~~-~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~ 312 (326)
|+.|++||++....++.....+. ..+....|++++++|++|+ .|+.|++||+.+++++.........++..++|.|.
T Consensus 236 Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 236 QRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 89999999997655665554333 3455667899999999877 59999999999998877655433567888888875
No 65
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.1e-25 Score=169.26 Aligned_cols=224 Identities=13% Similarity=0.144 Sum_probs=174.8
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
+.+|++++.|+.|++|+...+.-......+ ...|...|+.+++.+ .+.+|++++.|.++.||.-...+
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vl----d~~hkrsVRsvAwsp--------~g~~La~aSFD~t~~Iw~k~~~e 94 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTVL----DDGHKRSVRSVAWSP--------HGRYLASASFDATVVIWKKEDGE 94 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEec----cccchheeeeeeecC--------CCcEEEEeeccceEEEeecCCCc
Confidence 557999999999999998643221111110 126778999999866 67799999999999999854322
Q ss_pred cccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce---eeeeecCCCCCCCCcCCCCceeeeEE
Q 020454 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAF 221 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (326)
-..+...+ .+..+|.|++|+++|++||+++.|+.|-||.+.... +...++.|. ..|..+.|
T Consensus 95 ------fecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht---------qDVK~V~W 158 (312)
T KOG0645|consen 95 ------FECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT---------QDVKHVIW 158 (312)
T ss_pred ------eeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc---------ccccEEEE
Confidence 11233333 457789999999999999999999999999987543 455566665 44778999
Q ss_pred eecCCCcEEEEEeCCCeEEEEeCCC--CCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce
Q 020454 222 LSIDDHRKFVAGTNDHQVRLYDTSA--QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (326)
Q Consensus 222 ~p~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~ 299 (326)
+|..+ +|++++.|.+|++|+-.. .-.+++++..|...|.+++|+|.|..|++++.|++++||-..+. +.+-
T Consensus 159 HPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~ 231 (312)
T KOG0645|consen 159 HPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGM 231 (312)
T ss_pred cCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchh
Confidence 99755 999999999999998652 22468899999999999999999999999999999999987632 3322
Q ss_pred ecceEEEEEECCCCCEEEEeccCccC
Q 020454 300 CSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 300 ~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
|..++..++|. +..|+|++.|+++
T Consensus 232 ~sr~~Y~v~W~--~~~IaS~ggD~~i 255 (312)
T KOG0645|consen 232 HSRALYDVPWD--NGVIASGGGDDAI 255 (312)
T ss_pred cccceEeeeec--ccceEeccCCCEE
Confidence 37899999998 5689999999875
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.3e-26 Score=181.87 Aligned_cols=236 Identities=13% Similarity=0.134 Sum_probs=179.3
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
++.+++|+.||.+++||. .|+....+. +|.++|....+...+. ....+++++.|.++++|.++...
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~--------Ght~~ik~v~~v~~n~-----~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIV--------GHTGPIKSVAWVIKNS-----SSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEe--------cCCcceeeeEEEecCC-----ccceEEEecCCceEEEEEecCch
Confidence 568999999999999999 677766665 6778998887766442 44579999999999999988654
Q ss_pred cccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce--eeeeec-------------CCCCCC-C
Q 020454 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--KIWTAK-------------PPPKNS-L 208 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~~-------------~~~~~~-~ 208 (326)
... ..++.- ..|...|.+++..+++..+++|+.|.+|.||+..+.. ...... ...... .
T Consensus 181 ~~~----~~~~~~-~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 181 NKV----KALKVC-RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred hhh----hHHhHh-cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 211 111111 1567889999999999999999999999999943210 000000 000001 1
Q ss_pred CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
...|...|.++.|.+ ...+.+++.|.+|+.||+.++ ....++.. ...++++.++|..++|++|+.|..+++||.+
T Consensus 256 l~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg-~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR 330 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETG-GLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPR 330 (423)
T ss_pred ecccccceeeEEEcC---CCceEeecccceEEEEEeecc-cceeeeec-CcceeEeecccccceeeecCCCCceeecCCC
Confidence 112557899999986 338999999999999999987 55555544 4779999999999999999999999999999
Q ss_pred CC--e-EEEEEcceecceEEEEEECCCC-CEEEEeccCccC
Q 020454 289 TG--K-LLGCFIGKCSGSIRSIARHPTL-PIIASCGFLEAA 325 (326)
Q Consensus 289 ~~--~-~~~~~~~~~~~~v~~l~~~p~~-~~l~s~s~D~~~ 325 (326)
++ + ..++|.+| .+.|.++.|+|.+ ..|+++|.|+++
T Consensus 331 ~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S~S~D~t~ 370 (423)
T KOG0313|consen 331 TGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQLVSGSYDNTV 370 (423)
T ss_pred CCCCceeEEeeecc-hhhhhheecCCCCceEEEEEecCCeE
Confidence 75 3 45778998 9999999999965 578999999975
No 67
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.4e-26 Score=183.37 Aligned_cols=224 Identities=14% Similarity=0.157 Sum_probs=188.2
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
.+.+++|+.|..+.++|...++.+..+. +|...|..+.+.+ ....+++++.|-.|++|......
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~--------Gh~kki~~v~~~~--------~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLK--------GHTKKITSVKFHK--------DLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhcc--------CcceEEEEEEecc--------chhheeecCCcceEEeecccccc
Confidence 4579999999999999999888887776 6667788777544 55689999999999999965432
Q ss_pred cccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 224 (326)
. .... ..+..+|+.+..||+|.||++++.|++....|++++..+........+ ..+++.+|+|
T Consensus 295 ~--------~~~~-~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~-------v~~ts~~fHp- 357 (506)
T KOG0289|consen 295 E--------PTSS-RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD-------VEYTSAAFHP- 357 (506)
T ss_pred C--------cccc-ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc-------ceeEEeeEcC-
Confidence 1 1111 235789999999999999999999999999999999987775543222 3478999999
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceE
Q 020454 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI 304 (326)
Q Consensus 225 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v 304 (326)
||.+|.+|+.|+.|+|||+.++ ..+..|.+|.++|..++|+.+|-+|++++.|+.|++||+|..+...++......+|
T Consensus 358 -DgLifgtgt~d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v 435 (506)
T KOG0289|consen 358 -DGLIFGTGTPDGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEV 435 (506)
T ss_pred -CceEEeccCCCceEEEEEcCCc-cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccc
Confidence 7879999999999999999987 46889999999999999999999999999999999999999888888774323479
Q ss_pred EEEEECCCCCEEEEeccCc
Q 020454 305 RSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 305 ~~l~~~p~~~~l~s~s~D~ 323 (326)
.++.|.+.|.+|+.+|.|=
T Consensus 436 ~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 436 NSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred eeEEEcCCCCeEEeeccee
Confidence 9999999999999998763
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=178.76 Aligned_cols=265 Identities=11% Similarity=0.112 Sum_probs=207.2
Q ss_pred CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (326)
Q Consensus 14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~ 93 (326)
...++||+.|..+-++|.... .+...+. .+...+.++-+. +....+++++.|-.|+||...........
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~-----q~l~~~~--Gh~kki~~v~~~--~~~~~v~~aSad~~i~vws~~~~s~~~~~-- 299 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSN-----QILATLK--GHTKKITSVKFH--KDLDTVITASADEIIRVWSVPLSSEPTSS-- 299 (506)
T ss_pred CCcceecCCCCceEEEecchh-----hhhhhcc--CcceEEEEEEec--cchhheeecCCcceEEeeccccccCcccc--
Confidence 477899999999999999877 4544554 334444444443 33346899999999999998655532222
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc-cCCCceEEEEEcC
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDI 172 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~ 172 (326)
..|+.+|.+++..+ .+.++++++.||...+.|++... .+..... ...-.+.+.+|||
T Consensus 300 ------~~h~~~V~~ls~h~--------tgeYllsAs~d~~w~Fsd~~~g~--------~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 300 ------RPHEEPVTGLSLHP--------TGEYLLSASNDGTWAFSDISSGS--------QLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred ------ccccccceeeeecc--------CCcEEEEecCCceEEEEEccCCc--------EEEEEeeccccceeEEeeEcC
Confidence 26778999888655 67899999999999999977543 2222222 2345699999999
Q ss_pred CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (326)
Q Consensus 173 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 252 (326)
||.+|.+|..|+.|+|||+.++..+..+.+|. ..|.+++|+- +|.+|++++.|+.|++||+|.. +...
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpght---------~~vk~i~FsE--NGY~Lat~add~~V~lwDLRKl-~n~k 425 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT---------GPVKAISFSE--NGYWLATAADDGSVKLWDLRKL-KNFK 425 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCCCCC---------CceeEEEecc--CceEEEEEecCCeEEEEEehhh-cccc
Confidence 99999999999999999999888777766654 6799999985 7889999999999999999976 4566
Q ss_pred EEeecC-CceEEEEecCCCCeEEEEcCCCcEEEEECCC--CeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 253 SFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT--GKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 253 ~~~~~~-~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~--~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
++...+ ..+.++.|.+.|.+|+.++.|=.|++++-.+ ...+..+..| .+..+.+.|....++++++|+|+.
T Consensus 426 t~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~-sg~st~v~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 426 TIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH-SGLSTGVRFGEHAQYLASTSMDAI 499 (506)
T ss_pred eeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc-ccccceeeecccceEEeeccchhh
Confidence 666543 4799999999999999998887777777544 4566677777 889999999999999999999974
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-25 Score=171.59 Aligned_cols=267 Identities=13% Similarity=0.157 Sum_probs=203.8
Q ss_pred eeeeeecCcccEEEEEecCCc-----CCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceee
Q 020454 15 LRALTFDSLGLIKVIEARGEH-----GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV 89 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~ 89 (326)
|++++|+..-.|.=+++.... ...+.+...|..+.+...+.+++. +++++++|+.|-+|+|||+.....+.
T Consensus 2 m~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV----s~~~~aSGssDetI~IYDm~k~~qlg 77 (362)
T KOG0294|consen 2 MEIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV----SGPYVASGSSDETIHIYDMRKRKQLG 77 (362)
T ss_pred eeEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe----cceeEeccCCCCcEEEEeccchhhhc
Confidence 899999999999888876552 334455556666666666666655 35589999999999999998776655
Q ss_pred eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEE
Q 020454 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 169 (326)
.+. .|.+.|+++.++.+. ..+.|++|++||.|.+|+...- ..++.+.. +...|+.++
T Consensus 78 ~ll--------~HagsitaL~F~~~~------S~shLlS~sdDG~i~iw~~~~W--------~~~~slK~-H~~~Vt~ls 134 (362)
T KOG0294|consen 78 ILL--------SHAGSITALKFYPPL------SKSHLLSGSDDGHIIIWRVGSW--------ELLKSLKA-HKGQVTDLS 134 (362)
T ss_pred cee--------ccccceEEEEecCCc------chhheeeecCCCcEEEEEcCCe--------EEeeeecc-cccccceeE
Confidence 554 556899999987622 2347999999999999996542 24444443 455699999
Q ss_pred EcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (326)
Q Consensus 170 ~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~ 249 (326)
+||.+++.++.+.|+.+++||+.+++.-+.+.-.. .-+.+.|+|. |.+|+.+..+ .|-+|.+... .
T Consensus 135 iHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~----------~at~v~w~~~--Gd~F~v~~~~-~i~i~q~d~A-~ 200 (362)
T KOG0294|consen 135 IHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN----------KATLVSWSPQ--GDHFVVSGRN-KIDIYQLDNA-S 200 (362)
T ss_pred ecCCCceEEEEcCCceeeeehhhcCccceeeccCC----------cceeeEEcCC--CCEEEEEecc-EEEEEecccH-h
Confidence 99999999999999999999999988766543322 1235899974 5577777754 5889998864 3
Q ss_pred ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEE--CCCCCEEEEeccCccC
Q 020454 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR--HPTLPIIASCGFLEAA 325 (326)
Q Consensus 250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~p~~~~l~s~s~D~~~ 325 (326)
....+... ..+.++.|- ++.++++|..|+.|.+||-.++.++..+.+| ..+|.++.+ .|++.+|+|+|.||.+
T Consensus 201 v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH-~~RVK~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 201 VFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH-ENRVKDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred Hhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc-hhheeeeEEEecCCceEEEEeccCceE
Confidence 33333332 456666664 6789999999999999999999999999998 999999984 3788999999999965
No 70
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=7.7e-26 Score=172.46 Aligned_cols=238 Identities=13% Similarity=0.174 Sum_probs=184.4
Q ss_pred CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE
Q 020454 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (326)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~ 127 (326)
+.+...+..+.|.+ ++.+|++|+.|..|.+|+.. +........ ..|.++|..+.+.. +.+.++
T Consensus 44 ~gh~geI~~~~F~P--~gs~~aSgG~Dr~I~LWnv~-gdceN~~~l------kgHsgAVM~l~~~~--------d~s~i~ 106 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHP--DGSCFASGGSDRAIVLWNVY-GDCENFWVL------KGHSGAVMELHGMR--------DGSHIL 106 (338)
T ss_pred CCCcceEEEEEECC--CCCeEeecCCcceEEEEecc-ccccceeee------ccccceeEeeeecc--------CCCEEE
Confidence 34555566666654 67799999999999999963 222111111 26779999999876 778999
Q ss_pred EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCC
Q 020454 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (326)
Q Consensus 128 ~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~ 206 (326)
+++.|.+++.||++... .++.++. +...++.+....-| .++.+|+.|+++++||+++...+....+.
T Consensus 107 S~gtDk~v~~wD~~tG~--------~~rk~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k--- 174 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETGK--------RIRKHKG-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK--- 174 (338)
T ss_pred EecCCceEEEEecccce--------eeehhcc-ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc---
Confidence 99999999999987654 3444332 34567777744444 67889999999999999987776654331
Q ss_pred CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (326)
Q Consensus 207 ~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd 286 (326)
-.++++.|.. .+..+.+|+-|+.|++||+|.. ...+.+.+|..+|+.+..+|+|.++.+-+.|.++++||
T Consensus 175 -------yqltAv~f~d--~s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd 244 (338)
T KOG0265|consen 175 -------YQLTAVGFKD--TSDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWD 244 (338)
T ss_pred -------eeEEEEEecc--cccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccccceEEEEE
Confidence 3477888875 4558999999999999999977 66899999999999999999999999999999999999
Q ss_pred CCC----CeEEEEEcceecc----eEEEEEECCCCCEEEEeccCccC
Q 020454 287 IRT----GKLLGCFIGKCSG----SIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 287 ~~~----~~~~~~~~~~~~~----~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
++- .+++..+.+| .. .....+|+|++..+.+|+.|+.+
T Consensus 245 ~rp~~p~~R~v~if~g~-~hnfeknlL~cswsp~~~~i~ags~dr~v 290 (338)
T KOG0265|consen 245 VRPFAPSQRCVKIFQGH-IHNFEKNLLKCSWSPNGTKITAGSADRFV 290 (338)
T ss_pred ecccCCCCceEEEeecc-hhhhhhhcceeeccCCCCccccccccceE
Confidence 984 3557778775 32 34467899999999999999864
No 71
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.3e-25 Score=170.48 Aligned_cols=257 Identities=12% Similarity=0.121 Sum_probs=193.2
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..|++++=||.+++|++... .+...+ .+...++.++|.+... +++|+.||.|+.+|+.+++. ..+.
T Consensus 26 ~~LLvssWDgslrlYdv~~~-----~l~~~~---~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~~~~-~~ig-- 91 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPAN-----SLKLKF---KHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNTGNE-DQIG-- 91 (323)
T ss_pred CcEEEEeccCcEEEEeccch-----hhhhhe---ecCCceeeeeccCCce---EEEeccCceEEEEEecCCcc-eeec--
Confidence 45788889999999999865 232233 2344577888876444 99999999999999987764 2222
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.|..++.++.... ..+.+++++.|+.|++||..... ........+.|.++... +
T Consensus 92 ------th~~~i~ci~~~~--------~~~~vIsgsWD~~ik~wD~R~~~----------~~~~~d~~kkVy~~~v~--g 145 (323)
T KOG1036|consen 92 ------THDEGIRCIEYSY--------EVGCVISGSWDKTIKFWDPRNKV----------VVGTFDQGKKVYCMDVS--G 145 (323)
T ss_pred ------cCCCceEEEEeec--------cCCeEEEcccCccEEEEeccccc----------cccccccCceEEEEecc--C
Confidence 5668899998765 56799999999999999977422 11112234578888775 6
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC---Cce
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---RPV 251 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~---~~~ 251 (326)
+.|++|+.|..+.+||+++....++....... -.+.++++.|+..| ++.++-||+|.+=.+.... ..-
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lk-------yqtR~v~~~pn~eG--y~~sSieGRVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLK-------YQTRCVALVPNGEG--YVVSSIEGRVAVEYFDDSEEAQSKK 216 (323)
T ss_pred CEEEEeecCceEEEEEcccccchhhhccccce-------eEEEEEEEecCCCc--eEEEeecceEEEEccCCchHHhhhc
Confidence 88889999999999999987765543222211 24779999996554 7888889988775544320 112
Q ss_pred eEEeecC---------CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454 252 MSFDFRE---------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 252 ~~~~~~~---------~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
..|+.|. .+|++++|+|--..+++|+.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||.++.
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccCCCeEEEEec
Confidence 3444442 28999999999999999999999999999999999888876 788999999999999998863
No 72
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=4.3e-26 Score=182.85 Aligned_cols=241 Identities=16% Similarity=0.165 Sum_probs=177.0
Q ss_pred CCCeEEEEecCCcEEEEeccccceeeeec-ccCC-CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcc
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDLRVAIS-NAGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~ 141 (326)
+..++++++..+.|.|||..+-.-..... ...+ .....|++.-.+|.+.. + ....+++++.|+.|.+||++
T Consensus 136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~-~------~~g~Lls~~~d~~i~lwdi~ 208 (422)
T KOG0264|consen 136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNR-Q------QEGTLLSGSDDHTICLWDIN 208 (422)
T ss_pred CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccc-c------cceeEeeccCCCcEEEEecc
Confidence 34478888999999999986432222111 0000 00113334334455432 2 45789999999999999998
Q ss_pred ccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCC--ceeeeeecCCCCCCCCcCCCCceee
Q 020454 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDK--CEKIWTAKPPPKNSLGIFTPTWFTS 218 (326)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (326)
..... .... ..+.+--.+...|..++|++.. .+|++++.|+.+.|||+++ .++....+. |...|.+
T Consensus 209 ~~~~~-~~~~-~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a---------h~~~vn~ 277 (422)
T KOG0264|consen 209 AESKE-DKVV-DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA---------HSAEVNC 277 (422)
T ss_pred ccccC-Cccc-cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc---------cCCceeE
Confidence 65532 1112 2333344567889999999965 7889999999999999995 333333333 3467899
Q ss_pred eEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCC--------
Q 020454 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRT-------- 289 (326)
Q Consensus 219 ~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~-------- 289 (326)
++|.|.+ +..||+|+.|++|.+||+|+..++++++..|+..|..|.|+|+ ...|++++.|+.+.+||+..
T Consensus 278 ~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 278 VAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 9999974 5699999999999999999988899999999999999999998 56777899999999999974
Q ss_pred ------CeEEEEEcceecceEEEEEECCCCCE-EEEeccCcc
Q 020454 290 ------GKLLGCFIGKCSGSIRSIARHPTLPI-IASCGFLEA 324 (326)
Q Consensus 290 ------~~~~~~~~~~~~~~v~~l~~~p~~~~-l~s~s~D~~ 324 (326)
.+++..-.|| ...|..+.|+|..++ |+|.+.|+.
T Consensus 357 da~dgppEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~ 397 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNI 397 (422)
T ss_pred hhccCCcceeEEecCc-ccccccccCCCCCCeEEEEecCCce
Confidence 1345556687 999999999998875 667777754
No 73
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-24 Score=167.56 Aligned_cols=231 Identities=16% Similarity=0.176 Sum_probs=178.8
Q ss_pred EEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec--
Q 020454 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-- 131 (326)
Q Consensus 54 ~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~-- 131 (326)
+.++.+. .++.+|++++.|.+++|||..+++.+..+... + -.+-...+.. +...++.++.
T Consensus 17 i~sl~fs--~~G~~litss~dDsl~LYd~~~g~~~~ti~sk-------k-yG~~~~~Fth--------~~~~~i~sStk~ 78 (311)
T KOG1446|consen 17 INSLDFS--DDGLLLITSSEDDSLRLYDSLSGKQVKTINSK-------K-YGVDLACFTH--------HSNTVIHSSTKE 78 (311)
T ss_pred eeEEEec--CCCCEEEEecCCCeEEEEEcCCCceeeEeecc-------c-ccccEEEEec--------CCceEEEccCCC
Confidence 4455554 44558999999999999999999998888752 1 1222233333 4456776666
Q ss_pred CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (326)
|..|+..++..+. .+|.+. .|...|.+++.+|-+..+++++.|++|++||++..++.-.+....
T Consensus 79 d~tIryLsl~dNk--------ylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~------- 142 (311)
T KOG1446|consen 79 DDTIRYLSLHDNK--------YLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG------- 142 (311)
T ss_pred CCceEEEEeecCc--------eEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-------
Confidence 7899988877654 677766 567899999999999999999999999999999666544333222
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC-CCceeEEeec---CCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-RRPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~---~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~ 287 (326)
-..++|.| +|-++|++.....|++||+|.. +.|..++... ....+.+.|||||++|+.++..+.+++.|.
T Consensus 143 ----~pi~AfDp--~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA 216 (311)
T KOG1446|consen 143 ----RPIAAFDP--EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA 216 (311)
T ss_pred ----CcceeECC--CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence 11458888 5668888887779999999965 5677777655 668999999999999999999999999999
Q ss_pred CCCeEEEEEcceecceE---EEEEECCCCCEEEEeccCccC
Q 020454 288 RTGKLLGCFIGKCSGSI---RSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 288 ~~~~~~~~~~~~~~~~v---~~l~~~p~~~~l~s~s~D~~~ 325 (326)
-+|..+..+.++ ...- -+..|.|+++++++|+.||.+
T Consensus 217 f~G~~~~tfs~~-~~~~~~~~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 217 FDGTVKSTFSGY-PNAGNLPLSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred cCCcEeeeEeec-cCCCCcceeEEECCCCcEEEEecCCCcE
Confidence 999999988875 3322 467899999999999999974
No 74
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=3.4e-25 Score=189.77 Aligned_cols=281 Identities=14% Similarity=0.189 Sum_probs=202.7
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
.+++.|..+|.+++|+++++ +++.++.+-. ..+.++ ..++.-+.+++|..+|+|.++++..++.+..++.
T Consensus 173 NKIvvGs~~G~lql~Nvrt~-----K~v~~f~~~~--s~IT~i--eqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~- 242 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTG-----KVVYTFQEFF--SRITAI--EQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ- 242 (910)
T ss_pred eeEEEeecCCcEEEEEeccC-----cEEEEecccc--cceeEe--ccCCcceEEEEeccCceEEEEEcccCcEEEEEEc-
Confidence 78999999999999999999 8888887544 333322 3334445799999999999999999999888873
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc------------------------ccccc
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------------SAESS 150 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~------------------------~~~~~ 150 (326)
..++|..+.+-. + ....++++...|.+.+||++.... .+...
T Consensus 243 -------d~g~VtslSFrt-D------G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~ 308 (910)
T KOG1539|consen 243 -------DWGRVTSLSFRT-D------GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGA 308 (910)
T ss_pred -------cccceeEEEecc-C------CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccC
Confidence 358899888533 1 124577777779999999887543 11111
Q ss_pred cceEE---------------------------------------------------------------------------
Q 020454 151 CSTVK--------------------------------------------------------------------------- 155 (326)
Q Consensus 151 ~~~~~--------------------------------------------------------------------------- 155 (326)
|..++
T Consensus 309 DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~ 388 (910)
T KOG1539|consen 309 DNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVF 388 (910)
T ss_pred CCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccccc
Confidence 22222
Q ss_pred -------------------------------------EEEccCC----------------CceEEEEEcCCCCEEEEecC
Q 020454 156 -------------------------------------SWNVCAS----------------GTIAFSKVDISEKFSLFGGK 182 (326)
Q Consensus 156 -------------------------------------~~~~~~~----------------~~v~~~~~~~~~~~l~sg~~ 182 (326)
.|+.... ..+.+++.++.|++.+.|..
T Consensus 389 ~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S 468 (910)
T KOG1539|consen 389 STEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS 468 (910)
T ss_pred chhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc
Confidence 2222110 12557777777777777777
Q ss_pred CCeEEEEECCCcee--ee-----------e--ecCC--------------------CCCCCCcCCCCceeeeEEeecCCC
Q 020454 183 GVEVNVWDLDKCEK--IW-----------T--AKPP--------------------PKNSLGIFTPTWFTSAAFLSIDDH 227 (326)
Q Consensus 183 d~~i~iwd~~~~~~--~~-----------~--~~~~--------------------~~~~~~~~~~~~v~~~~~~p~~~~ 227 (326)
.|.|-+|+++++.. .+ - +.+. ..-.-.++....++.+.++.. .
T Consensus 469 ~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~--s 546 (910)
T KOG1539|consen 469 KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRV--S 546 (910)
T ss_pred CCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeeh--h
Confidence 77888887776510 00 0 0000 000001122234556666653 3
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEE
Q 020454 228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI 307 (326)
Q Consensus 228 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 307 (326)
.+++.+..|=.|+++|..+. +.++.|.+|...|++++|||||++|++++.|++|++||+.++.++-.+. ...+..++
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~--vd~~~~sl 623 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL--VDSPCTSL 623 (910)
T ss_pred hhhhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe--cCCcceee
Confidence 38888999999999999986 6789999999999999999999999999999999999999999998777 37899999
Q ss_pred EECCCCCEEEEeccCcc
Q 020454 308 ARHPTLPIIASCGFLEA 324 (326)
Q Consensus 308 ~~~p~~~~l~s~s~D~~ 324 (326)
.|+|++.+|||...|+.
T Consensus 624 s~SPngD~LAT~Hvd~~ 640 (910)
T KOG1539|consen 624 SFSPNGDFLATVHVDQN 640 (910)
T ss_pred EECCCCCEEEEEEecCc
Confidence 99999999999988853
No 75
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=178.41 Aligned_cols=235 Identities=15% Similarity=0.230 Sum_probs=197.2
Q ss_pred eCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEc
Q 020454 61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (326)
Q Consensus 61 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~ 140 (326)
.+++++||++|+.||.|.+||..+|++.+.++.-..+....++.+|.++.+.. +...+++|+.||.|++|.+
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR--------DsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR--------DSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc--------cHHHhhccCcCCcEEEEEE
Confidence 35677799999999999999999999887776544444446778999999766 6779999999999999998
Q ss_pred cccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeE
Q 020454 141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (326)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (326)
.... .++.++-.+...|+|+.|+.++..+++++.|.+++|.-+.+++.+..+++|. .+|+...
T Consensus 293 ~tG~--------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs---------Syvn~a~ 355 (508)
T KOG0275|consen 293 ETGQ--------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS---------SYVNEAT 355 (508)
T ss_pred ecch--------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc---------ccccceE
Confidence 7755 6777887788999999999999999999999999999999999999988876 6788889
Q ss_pred EeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee--cCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
|.+ +|+.+++++.||+|++|+.++. .++.+|+. .+.+|.++-.-|. ...++++...++|+|.++. |+.+..|.
T Consensus 356 ft~--dG~~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfs 431 (508)
T KOG0275|consen 356 FTD--DGHHIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFS 431 (508)
T ss_pred EcC--CCCeEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeec
Confidence 987 7779999999999999999987 56777763 4568888887775 5688888999999999985 78888776
Q ss_pred ce--ecceEEEEEECCCCCEEEEeccCcc
Q 020454 298 GK--CSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 298 ~~--~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
.. ..+...+...+|.|.++...+.|+.
T Consensus 432 SGkREgGdFi~~~lSpkGewiYcigED~v 460 (508)
T KOG0275|consen 432 SGKREGGDFINAILSPKGEWIYCIGEDGV 460 (508)
T ss_pred cCCccCCceEEEEecCCCcEEEEEccCcE
Confidence 32 1345667778999999999999974
No 76
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=3.8e-25 Score=187.60 Aligned_cols=269 Identities=13% Similarity=0.115 Sum_probs=207.9
Q ss_pred cCcccEEEEEecCC--cCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCC
Q 020454 21 DSLGLIKVIEARGE--HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG 98 (326)
Q Consensus 21 ~~~G~i~vw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~ 98 (326)
-.+..+..+.++.. ....+.....+.-..+..-+.++++..+.. ++....+++|++|+..+.+.+.++.+
T Consensus 341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~---~~~Sga~~SikiWn~~t~kciRTi~~----- 412 (888)
T KOG0306|consen 341 LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI---LLASGAGESIKIWNRDTLKCIRTITC----- 412 (888)
T ss_pred eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCce---eeeecCCCcEEEEEccCcceeEEecc-----
Confidence 55667777776652 111112222333345555566777754443 55566679999999999999888876
Q ss_pred CCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE
Q 020454 99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL 178 (326)
Q Consensus 99 ~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 178 (326)
+.+.+..+.+ .+.+++.|..+|.+.++|+..... -.+++ .|.+.|.+++..|+++.++
T Consensus 413 -----~y~l~~~Fvp--------gd~~Iv~G~k~Gel~vfdlaS~~l-----~Eti~----AHdgaIWsi~~~pD~~g~v 470 (888)
T KOG0306|consen 413 -----GYILASKFVP--------GDRYIVLGTKNGELQVFDLASASL-----VETIR----AHDGAIWSISLSPDNKGFV 470 (888)
T ss_pred -----ccEEEEEecC--------CCceEEEeccCCceEEEEeehhhh-----hhhhh----ccccceeeeeecCCCCceE
Confidence 5777777766 678999999999999999865331 12222 4578899999999999999
Q ss_pred EecCCCeEEEEECCCce-----eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454 179 FGGKGVEVNVWDLDKCE-----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 179 sg~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 253 (326)
+|+.|.+|++||..-.. ....++-+.... +.-+..|.+++++| ++++|+++=-|.+|++|-+.+. +...+
T Consensus 471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt--Lel~ddvL~v~~Sp--dgk~LaVsLLdnTVkVyflDtl-KFfls 545 (888)
T KOG0306|consen 471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT--LELEDDVLCVSVSP--DGKLLAVSLLDNTVKVYFLDTL-KFFLS 545 (888)
T ss_pred EecCCcEEEEEeEEEEeccCcccceeeeeccceE--EeccccEEEEEEcC--CCcEEEEEeccCeEEEEEecce-eeeee
Confidence 99999999999975211 111122222122 33456789999998 7889999999999999999987 55778
Q ss_pred EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+.+|.-||.++.++||++.+++|+.|.+|++|-+.-|.+.+.+-+| .+.|.++.|.|....++|||.|+.+
T Consensus 546 LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH-dDSvm~V~F~P~~~~FFt~gKD~kv 616 (888)
T KOG0306|consen 546 LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH-DDSVMSVQFLPKTHLFFTCGKDGKV 616 (888)
T ss_pred ecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc-cCceeEEEEcccceeEEEecCcceE
Confidence 8899999999999999999999999999999999999999999998 9999999999999999999999865
No 77
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=2.7e-24 Score=186.71 Aligned_cols=259 Identities=12% Similarity=0.094 Sum_probs=172.3
Q ss_pred ecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce-eeeecccCCCC
Q 020454 20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-RVAISNAGDSG 98 (326)
Q Consensus 20 ~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-~~~~~~~~~~~ 98 (326)
|+..|.+++|+.... .....+. .+...+..+.|... .+.+|++|+.||+|+|||+.++.. ...+.. ....
T Consensus 50 GG~~gvI~L~~~~r~-----~~v~~L~--gH~~~V~~lafsP~-~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~-p~~~ 120 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-----PPVIKLK--GHTSSILDLQFNPC-FSEILASGSEDLTIRVWEIPHNDESVKEIKD-PQCI 120 (568)
T ss_pred CCceeEEEeeecCCC-----ceEEEEc--CCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCCcccccccc-ceEE
Confidence 556777888876543 2222333 34455666666432 245899999999999999975432 111000 0000
Q ss_pred CCCCCCCeeeeecccccccccCCCCc-eEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEE
Q 020454 99 AQPEDDGIVGLHLFKRQREESSSRSR-TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS 177 (326)
Q Consensus 99 ~~~~~~~i~~l~~~~~~~~~~~~~~~-~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 177 (326)
...|...|.++.+.+ ... .+++++.|+.|++||+.... .+..+ .+...|.+++|+|+|.+|
T Consensus 121 L~gH~~~V~sVaf~P--------~g~~iLaSgS~DgtIrIWDl~tg~--------~~~~i--~~~~~V~SlswspdG~lL 182 (568)
T PTZ00420 121 LKGHKKKISIIDWNP--------MNYYIMCSSGFDSFVNIWDIENEK--------RAFQI--NMPKKLSSLKWNIKGNLL 182 (568)
T ss_pred eecCCCcEEEEEECC--------CCCeEEEEEeCCCeEEEEECCCCc--------EEEEE--ecCCcEEEEEECCCCCEE
Confidence 125667898888755 333 45688999999999987543 22222 235689999999999999
Q ss_pred EEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC----eEEEEeCCCCCCceeE
Q 020454 178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----QVRLYDTSAQRRPVMS 253 (326)
Q Consensus 178 ~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg----~v~iwd~~~~~~~~~~ 253 (326)
++++.|+.|+|||+++++.+..+..|...... ..+....|++ ++.+|++++.|+ +|+|||++....++..
T Consensus 183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s----~~v~~~~fs~--d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~ 256 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNT----KNIWIDGLGG--DDNYILSTGFSKNNMREMKLWDLKNTTSALVT 256 (568)
T ss_pred EEEecCCEEEEEECCCCcEEEEEecccCCcee----EEEEeeeEcC--CCCEEEEEEcCCCCccEEEEEECCCCCCceEE
Confidence 99999999999999999888877776532110 1112223444 455888877664 7999999965567766
Q ss_pred EeecC--CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE--EEEcceecceEEEEEECCCC
Q 020454 254 FDFRE--TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GCFIGKCSGSIRSIARHPTL 313 (326)
Q Consensus 254 ~~~~~--~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~--~~~~~~~~~~v~~l~~~p~~ 313 (326)
+..+. +.+...-..+++.++++|..|+.|++|++..+... ..+. + ..++.+++|.|..
T Consensus 257 ~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s-~~p~~g~~f~Pkr 318 (568)
T PTZ00420 257 MSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-S-CSPFRSFGFLPKQ 318 (568)
T ss_pred EEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-c-CCCccceEEcccc
Confidence 54432 33333333455888999999999999999877532 2233 3 6789999999964
No 78
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=9.5e-26 Score=172.96 Aligned_cols=279 Identities=14% Similarity=0.159 Sum_probs=209.6
Q ss_pred CCeeeeeecCcccEEEEEecCC-------------cCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEE
Q 020454 13 PPLRALTFDSLGLIKVIEARGE-------------HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDI 79 (326)
Q Consensus 13 ~~~~l~~~~~~G~i~vw~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i 79 (326)
..+.++||+.|-.||+.|++.- .....-++.++.++......+ ...+.+.+|++|+.|++|++
T Consensus 123 DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l----~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 123 DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL----DFHPRETILISGSRDNTVKL 198 (430)
T ss_pred CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce----eecchhheEEeccCCCeEEE
Confidence 3388999999999999998721 001112344444444444433 23455668999999999999
Q ss_pred EeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc
Q 020454 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV 159 (326)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~ 159 (326)
||......++.++.+ .+..++.++.+.+ .+.++++++.-..+++||++..+......- +-
T Consensus 199 FDfsK~saKrA~K~~------qd~~~vrsiSfHP--------sGefllvgTdHp~~rlYdv~T~QcfvsanP------d~ 258 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVF------QDTEPVRSISFHP--------SGEFLLVGTDHPTLRLYDVNTYQCFVSANP------DD 258 (430)
T ss_pred EecccHHHHHHHHHh------hccceeeeEeecC--------CCceEEEecCCCceeEEeccceeEeeecCc------cc
Confidence 999876666666654 3447899898766 678999999999999999987654221110 11
Q ss_pred cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeE
Q 020454 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (326)
Q Consensus 160 ~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v 239 (326)
.+.+.|+++.+++.+++.++|++||.|+|||--+++++..+.+.... ..|.+..|.. +++++++.+.|..|
T Consensus 259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g-------sevcSa~Ftk--n~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG-------SEVCSAVFTK--NGKYILSSGKDSTV 329 (430)
T ss_pred ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC-------ceeeeEEEcc--CCeEEeecCCccee
Confidence 23567999999999999999999999999999999988776553322 3477888875 78899999999999
Q ss_pred EEEeCCCCCCceeEEeec-----CCceEEEEecCCCCeEEEEcC-CCcEEEEECCCCeEEEEEc-ceecceEEEEEECCC
Q 020454 240 RLYDTSAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFI-GKCSGSIRSIARHPT 312 (326)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~-----~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~~p~ 312 (326)
++|.+.++ +++..+.+. ...-+...|+....|++.-++ .+.+.-||.++...+..+. +| .+.++.+.-+|.
T Consensus 330 kLWEi~t~-R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgH-n~a~R~i~HSP~ 407 (430)
T KOG0640|consen 330 KLWEISTG-RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGH-NGAVRWIVHSPV 407 (430)
T ss_pred eeeeecCC-ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCC-CCCceEEEeCCC
Confidence 99999988 677777653 112344467777778875554 5789999999987766665 56 999999999999
Q ss_pred CCEEEEeccCccCC
Q 020454 313 LPIIASCGFLEAAS 326 (326)
Q Consensus 313 ~~~l~s~s~D~~~~ 326 (326)
++.+.+||.|..|+
T Consensus 408 ~p~FmTcsdD~raR 421 (430)
T KOG0640|consen 408 EPAFMTCSDDFRAR 421 (430)
T ss_pred CCceeeecccceee
Confidence 99999999998764
No 79
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.2e-25 Score=189.16 Aligned_cols=243 Identities=15% Similarity=0.170 Sum_probs=181.6
Q ss_pred CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee--------------------------------eee-----
Q 020454 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--------------------------------VAI----- 91 (326)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~--------------------------------~~~----- 91 (326)
.+...|.++-|. ..++|||+|+.||.|+||.+...+.. ...
T Consensus 265 ah~gaIw~mKFS--~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 265 AHKGAIWAMKFS--HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred ccCCcEEEEEeC--CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 455566666664 56779999999999999988651100 000
Q ss_pred ---c---------ccC---CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEE
Q 020454 92 ---S---------NAG---DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS 156 (326)
Q Consensus 92 ---~---------~~~---~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~ 156 (326)
. .+. .....+|.+.|..+.| +..++|++.+.|.+|++|.+...+ .+++
T Consensus 343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSW---------SKn~fLLSSSMDKTVRLWh~~~~~--------CL~~ 405 (712)
T KOG0283|consen 343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSW---------SKNNFLLSSSMDKTVRLWHPGRKE--------CLKV 405 (712)
T ss_pred cCCccccCCCccccccccchhhhhccchhheeccc---------ccCCeeEeccccccEEeecCCCcc--------eeeE
Confidence 0 000 0011355666666765 356799999999999999977554 6777
Q ss_pred EEccCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC
Q 020454 157 WNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN 235 (326)
Q Consensus 157 ~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~ 235 (326)
|. |..-|+|++|+|. .+||++|+.|+.|+||++...+.+.-..-+ .-|++++|.| +|+..++|+.
T Consensus 406 F~--HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~----------~lITAvcy~P--dGk~avIGt~ 471 (712)
T KOG0283|consen 406 FS--HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR----------DLITAVCYSP--DGKGAVIGTF 471 (712)
T ss_pred Ee--cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh----------hhheeEEecc--CCceEEEEEe
Confidence 76 5789999999994 599999999999999999888776543322 3499999999 5889999999
Q ss_pred CCeEEEEeCCCCCCceeEEee--------cCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeEEEEEcceecc-eEE
Q 020454 236 DHQVRLYDTSAQRRPVMSFDF--------RETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG-SIR 305 (326)
Q Consensus 236 dg~v~iwd~~~~~~~~~~~~~--------~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~-~v~ 305 (326)
+|.+++|+.+.. +....+.. ....|+.+.|.|.. ..|++.+.|..|+|||.++..++.+|+|++.. .-.
T Consensus 472 ~G~C~fY~t~~l-k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~ 550 (712)
T KOG0283|consen 472 NGYCRFYDTEGL-KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQI 550 (712)
T ss_pred ccEEEEEEccCC-eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcce
Confidence 999999999865 44443332 12379999999753 45778899999999999999999999976332 345
Q ss_pred EEEECCCCCEEEEeccCccC
Q 020454 306 SIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 306 ~l~~~p~~~~l~s~s~D~~~ 325 (326)
...|+.||++|+++|.|..+
T Consensus 551 ~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 551 SASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred eeeEccCCCEEEEeecCceE
Confidence 67899999999999988753
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.9e-26 Score=188.46 Aligned_cols=277 Identities=16% Similarity=0.193 Sum_probs=195.5
Q ss_pred Cee-eeeecCcccEEEEEecCCcCCCcce-eeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc--eee
Q 020454 14 PLR-ALTFDSLGLIKVIEARGEHGGVPKV-VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRV 89 (326)
Q Consensus 14 ~~~-l~~~~~~G~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~--~~~ 89 (326)
.-| |.||+.||.|++|+......+.... ..++. .+..=+-.+... ..++.|++++.|-+|++|+...+. .+.
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme--~HsDWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~~c~s 111 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME--HHSDWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNTFCMS 111 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhh--hhHhHHhhHHhh--cCCCceEEecCCceEEEeecccCcchhHh
Confidence 356 9999999999999987541110000 11111 111111011111 233469999999999999997653 333
Q ss_pred eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc-cccccc-ceEEEEEccCCCceEE
Q 020454 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-SAESSC-STVKSWNVCASGTIAF 167 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~-~~~~~~-~~~~~~~~~~~~~v~~ 167 (326)
.+. .|.+.|.+++...+ +...+++|+-|+.|++||++.... ..++.+ -+..-.-..+...|++
T Consensus 112 tir--------~H~DYVkcla~~ak-------~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 112 TIR--------THKDYVKCLAYIAK-------NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred hhh--------cccchheeeeeccc-------CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 333 67789999997432 457899999999999999986432 111110 0111111134568999
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (326)
Q Consensus 168 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~ 247 (326)
++.++.+..|++|+.++.|++||.++++.+..+++|..+ |..+..++ +|..+++++.||+|++||+..+
T Consensus 177 LA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdN---------Vr~ll~~d--DGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 177 LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDN---------VRVLLVND--DGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred eecCCcceEEEecCcccceEEeccccccceeeeeccccc---------eEEEEEcC--CCCeEeecCCCceEEeeecccc
Confidence 999999999999999999999999999999999998744 66777765 7889999999999999999976
Q ss_pred CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe-EEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 248 ~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
+++.++..|...+.++..+|+-.++++|+.||.|..=|+++.. ....++ . ..+|..+..+...+-+-++..|+
T Consensus 246 -rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick-~-daPv~~l~~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 246 -RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK-E-DAPVLKLHLHEHDNSVWVTTTDS 319 (735)
T ss_pred -ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec-C-CCchhhhhhccccCCceeeeccc
Confidence 7899999999999999999999999999999999999999843 333333 2 45666666663333234444444
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=180.63 Aligned_cols=238 Identities=16% Similarity=0.225 Sum_probs=180.9
Q ss_pred CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE
Q 020454 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (326)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~ 127 (326)
+.+...+.+++|.+....+ +|+.+. -.+.||+..+....+.+..+. ..+.+..+-. ++..++
T Consensus 23 ~ke~~~vssl~fsp~~P~d-~aVt~S-~rvqly~~~~~~~~k~~srFk--------~~v~s~~fR~--------DG~Lla 84 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYD-FAVTSS-VRVQLYSSVTRSVRKTFSRFK--------DVVYSVDFRS--------DGRLLA 84 (487)
T ss_pred ccccCcceeEecCCCCCCc-eEEecc-cEEEEEecchhhhhhhHHhhc--------cceeEEEeec--------CCeEEE
Confidence 3455566677776544443 444433 579999998777766665442 4566555432 566788
Q ss_pred EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCC
Q 020454 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (326)
Q Consensus 128 ~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~ 206 (326)
+|.+.|.|+++|+.... .++.++ .+..++..+.|+|++ ..|++|+.|+.+++||+.+......+.+|.
T Consensus 85 aGD~sG~V~vfD~k~r~--------iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht-- 153 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRV--------ILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT-- 153 (487)
T ss_pred ccCCcCcEEEeccccHH--------HHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc--
Confidence 88899999999965422 233333 346789999999976 677888899999999999888655666655
Q ss_pred CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (326)
Q Consensus 207 ~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd 286 (326)
.+|.+.+|+|.++ .++++|+.||+|++||+|.....+.++ .|..+|..+.+-|.|..|++++.. .|++||
T Consensus 154 -------DYVR~g~~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWD 223 (487)
T KOG0310|consen 154 -------DYVRCGDISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWD 223 (487)
T ss_pred -------ceeEeeccccCCC-eEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEE
Confidence 7899999999754 499999999999999999764455555 577899999999999999986654 899999
Q ss_pred CCCC-eEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 287 IRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 287 ~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+-+| +.+..+..| ...|+||.+..++..|+|+|.||.+
T Consensus 224 l~~G~qll~~~~~H-~KtVTcL~l~s~~~rLlS~sLD~~V 262 (487)
T KOG0310|consen 224 LTTGGQLLTSMFNH-NKTVTCLRLASDSTRLLSGSLDRHV 262 (487)
T ss_pred ecCCceehhhhhcc-cceEEEEEeecCCceEeecccccce
Confidence 9965 455555557 9999999999999999999999975
No 82
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=2.8e-24 Score=186.62 Aligned_cols=226 Identities=12% Similarity=0.053 Sum_probs=162.3
Q ss_pred EecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccc
Q 020454 71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS 150 (326)
Q Consensus 71 g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~ 150 (326)
|+.++.|++|+......+..+. .|.++|.++.+.+. .+..|++++.||.|++|++..........
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~--------gH~~~V~~lafsP~-------~~~lLASgS~DgtIrIWDi~t~~~~~~~i 114 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLK--------GHTSSILDLQFNPC-------FSEILASGSEDLTIRVWEIPHNDESVKEI 114 (568)
T ss_pred CCceeEEEeeecCCCceEEEEc--------CCCCCEEEEEEcCC-------CCCEEEEEeCCCeEEEEECCCCCcccccc
Confidence 6678899999986554433333 66789999997541 24689999999999999987532110000
Q ss_pred cceEEEEEccCCCceEEEEEcCCCCE-EEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454 151 CSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (326)
Q Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 229 (326)
...+..+. .+...|.+++|+|++.. |++++.|++|+|||+++++.+..+.. ...|.+++|+| ++.+
T Consensus 115 ~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~----------~~~V~Slswsp--dG~l 181 (568)
T PTZ00420 115 KDPQCILK-GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM----------PKKLSSLKWNI--KGNL 181 (568)
T ss_pred ccceEEee-cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec----------CCcEEEEEECC--CCCE
Confidence 11222232 35678999999998864 57999999999999998887665431 13488999998 5679
Q ss_pred EEEEeCCCeEEEEeCCCCCCceeEEeecCCceEE-----EEecCCCCeEEEEcCCC----cEEEEECCC-CeEEEEEcce
Q 020454 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-----VAEEPDSFNIYIGNGSG----DLASVDIRT-GKLLGCFIGK 299 (326)
Q Consensus 230 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~-----v~~s~~~~~l~~g~~dg----~v~iwd~~~-~~~~~~~~~~ 299 (326)
|++++.|+.|+|||++++ ..+.++..|.+.+.. ..|++++.+|++++.|+ .|+|||+++ ++++..+..+
T Consensus 182 Lat~s~D~~IrIwD~Rsg-~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld 260 (568)
T PTZ00420 182 LSGTCVGKHMHIIDPRKQ-EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID 260 (568)
T ss_pred EEEEecCCEEEEEECCCC-cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec
Confidence 999999999999999987 667888888775433 23568889999877664 799999995 5666555422
Q ss_pred e-cceEEEEEECCCCCEEEEeccCccC
Q 020454 300 C-SGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 300 ~-~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
. .+.+......+++.++++|+.|+.+
T Consensus 261 ~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 261 NASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred CCccceEEeeeCCCCCEEEEEECCCeE
Confidence 0 2333334445568899999999875
No 83
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=6.6e-24 Score=183.30 Aligned_cols=237 Identities=11% Similarity=0.048 Sum_probs=167.6
Q ss_pred EEEEecCCcEEEEeccccceeeeecccC-----CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454 68 LAVARKNGLTDILNPLNGDLRVAISNAG-----DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (326)
Q Consensus 68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~ 142 (326)
++++..+.....|+...+..+..+.... ++....|.+.|.++.+.+. ++..|++++.|+.|++|++..
T Consensus 35 ~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-------d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 35 TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-------DPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-------CCCEEEEEeCCCEEEEEecCC
Confidence 5666666666666653332221111100 0112367789999987541 345899999999999999875
Q ss_pred cccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454 143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (326)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (326)
.... ......+..+. .+...|.+++|+|++ ++|++|+.|++|+|||+++++.+..+..|. ..|.+++|
T Consensus 108 ~~~~-~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~---------~~V~sla~ 176 (493)
T PTZ00421 108 EGLT-QNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS---------DQITSLEW 176 (493)
T ss_pred Cccc-cccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC---------CceEEEEE
Confidence 4211 01112333333 356789999999986 799999999999999999988877766554 56889999
Q ss_pred eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCc-eEEEEecCCCCeEEEEc----CCCcEEEEECCCCe-EEEE
Q 020454 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-IKAVAEEPDSFNIYIGN----GSGDLASVDIRTGK-LLGC 295 (326)
Q Consensus 222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-i~~v~~s~~~~~l~~g~----~dg~v~iwd~~~~~-~~~~ 295 (326)
+| ++.+|++++.|++|++||++++ +.+.++..|... ...+.|.+++..+++++ .|+.|++||+++.. ++..
T Consensus 177 sp--dG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 177 NL--DGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EC--CCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 98 5679999999999999999987 567788777654 45678999887777543 47899999998754 4444
Q ss_pred EcceecceEEEEEECCCCCEEEEecc-CccC
Q 020454 296 FIGKCSGSIRSIARHPTLPIIASCGF-LEAA 325 (326)
Q Consensus 296 ~~~~~~~~v~~l~~~p~~~~l~s~s~-D~~~ 325 (326)
...+....+....|++++.+|+++|. |+.+
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence 44332445666789999999998884 8765
No 84
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.3e-24 Score=182.84 Aligned_cols=258 Identities=12% Similarity=0.069 Sum_probs=197.7
Q ss_pred CCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEE-EEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVL-AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (326)
Q Consensus 13 ~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~ 91 (326)
+...+++++.||.+|||+-..+ +.... ..+. .+...+. ..|+.. .+...|++|+.|.+|.+|...+.+....+
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~--~~l~~-~~~~--~~~g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~L 97 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGK--QYLET-HAFE--GPKGFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYTL 97 (745)
T ss_pred CCeEEeecCCCCceeeeeccCc--ccccc-eecc--cCcceeeccceecc-ccCcceEeecccceEEEEecCCCCchhhh
Confidence 3467999999999999997655 11111 0111 1222222 255554 34446999999999999999887776666
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 171 (326)
. +|+..|++++..+ +..+++++-|.++++|....... .|. .|...|..+..-
T Consensus 98 k--------gH~snVC~ls~~~---------~~~~iSgSWD~TakvW~~~~l~~----------~l~-gH~asVWAv~~l 149 (745)
T KOG0301|consen 98 K--------GHKSNVCSLSIGE---------DGTLISGSWDSTAKVWRIGELVY----------SLQ-GHTASVWAVASL 149 (745)
T ss_pred h--------ccccceeeeecCC---------cCceEecccccceEEecchhhhc----------ccC-Ccchheeeeeec
Confidence 6 7778999998644 45699999999999998765321 122 456788888888
Q ss_pred CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce
Q 020454 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (326)
Q Consensus 172 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 251 (326)
|++ .++||+.|.+|++|.- ++.+..+++|. ..|.++++.|. + .|++++.||.|++|++. + ..+
T Consensus 150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHt---------D~VRgL~vl~~--~-~flScsNDg~Ir~w~~~-g-e~l 212 (745)
T KOG0301|consen 150 PEN-TYVTGSADKTIKLWKG--GTLLKTFSGHT---------DCVRGLAVLDD--S-HFLSCSNDGSIRLWDLD-G-EVL 212 (745)
T ss_pred CCC-cEEeccCcceeeeccC--Cchhhhhccch---------hheeeeEEecC--C-CeEeecCCceEEEEecc-C-cee
Confidence 887 6779999999999986 56666666655 55889999873 2 79999999999999995 4 468
Q ss_pred eEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 252 ~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..+.+|...+++++..+++..|+++++|++++||+.. ++.+.+.-+ ...|+++.+-++|. |++||.||.+
T Consensus 213 ~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-ttsiWsa~~L~NgD-Ivvg~SDG~V 282 (745)
T KOG0301|consen 213 LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-TTSIWSAKVLLNGD-IVVGGSDGRV 282 (745)
T ss_pred eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-ccceEEEEEeeCCC-EEEeccCceE
Confidence 8999999999999988888899999999999999976 777777744 66899999988886 5677889865
No 85
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.3e-25 Score=187.61 Aligned_cols=204 Identities=16% Similarity=0.140 Sum_probs=158.3
Q ss_pred eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (326)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~ 132 (326)
-++.++|. ...+|++++.|.+||||++...+.+..|. |.+-|+++++.+. +++++++|+-|
T Consensus 371 DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~---------HndfVTcVaFnPv-------DDryFiSGSLD 431 (712)
T KOG0283|consen 371 DILDLSWS---KNNFLLSSSMDKTVRLWHPGRKECLKVFS---------HNDFVTCVAFNPV-------DDRYFISGSLD 431 (712)
T ss_pred hheecccc---cCCeeEeccccccEEeecCCCcceeeEEe---------cCCeeEEEEeccc-------CCCcEeecccc
Confidence 34445553 33479999999999999998888777765 3478999997663 68899999999
Q ss_pred CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (326)
Q Consensus 133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (326)
|+++||++... .+..|.-- ..-|+++.+.|+|++.++|+.+|.+++|+....+.....+-.........+
T Consensus 432 ~KvRiWsI~d~---------~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 432 GKVRLWSISDK---------KVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred cceEEeecCcC---------eeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999997643 56667633 478999999999999999999999999999987765543322222212223
Q ss_pred CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec---CCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
. .|+++.|.|... ..+++.+.|..|||||.+.. ..+..|++. .+++.+ .|+.||++|+++++|..|++|+...
T Consensus 502 ~-rITG~Q~~p~~~-~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~A-sfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 502 K-RITGLQFFPGDP-DEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISA-SFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred c-eeeeeEecCCCC-CeEEEecCCCceEEEeccch-hhhhhhcccccCCcceee-eEccCCCEEEEeecCceEEEEeCCC
Confidence 3 799999999744 37888889999999999865 566777643 335555 8999999999999999999999743
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=7.4e-24 Score=161.87 Aligned_cols=264 Identities=13% Similarity=0.125 Sum_probs=194.5
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
.-+++++=||.||+|+++..-.-..+. .......++.++|.++. ..+++|+.|+.+++||+.+++. ..+.
T Consensus 41 ~~~~A~SWD~tVR~wevq~~g~~~~ka-----~~~~~~PvL~v~Wsddg--skVf~g~~Dk~~k~wDL~S~Q~-~~v~-- 110 (347)
T KOG0647|consen 41 NLLAAGSWDGTVRIWEVQNSGQLVPKA-----QQSHDGPVLDVCWSDDG--SKVFSGGCDKQAKLWDLASGQV-SQVA-- 110 (347)
T ss_pred ceEEecccCCceEEEEEecCCcccchh-----hhccCCCeEEEEEccCC--ceEEeeccCCceEEEEccCCCe-eeee--
Confidence 556789999999999998630111122 23455566777776554 4799999999999999998865 3333
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.|+++|..+++++.. ....|++++-|.+|++||.+... .+...++ ++.+++++.- .
T Consensus 111 ------~Hd~pvkt~~wv~~~------~~~cl~TGSWDKTlKfWD~R~~~--------pv~t~~L--PeRvYa~Dv~--~ 166 (347)
T KOG0647|consen 111 ------AHDAPVKTCHWVPGM------NYQCLVTGSWDKTLKFWDTRSSN--------PVATLQL--PERVYAADVL--Y 166 (347)
T ss_pred ------ecccceeEEEEecCC------CcceeEecccccceeecccCCCC--------eeeeeec--cceeeehhcc--C
Confidence 677899999987733 23478999999999999987544 3333333 5677777664 4
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-CceeE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMS 253 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~ 253 (326)
.+++++..+..|.+|+++++...++....+.. -.+.+++..++.+ ..+.|+-+|++-+..+.... ..-.+
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k~~~SpLk-------~Q~R~va~f~d~~--~~alGsiEGrv~iq~id~~~~~~nFt 237 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFKRIESPLK-------WQTRCVACFQDKD--GFALGSIEGRVAIQYIDDPNPKDNFT 237 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhhhhcCccc-------ceeeEEEEEecCC--ceEeeeecceEEEEecCCCCccCcee
Confidence 67888889999999999876654443222211 1367888887555 45999999999998877531 12234
Q ss_pred EeecC---------CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe-ccC
Q 020454 254 FDFRE---------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC-GFL 322 (326)
Q Consensus 254 ~~~~~---------~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~-s~D 322 (326)
|+-|. ..|++|+|+|.-..|++.+.||++.+||-.....+...+.| ..+|++..|+.+|.++|-+ |.|
T Consensus 238 FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~-~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 238 FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH-PQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred EEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC-CCccceeEecCCCCEEEEEeecc
Confidence 44443 36889999999889999999999999999888888888887 9999999999999977654 444
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.5e-24 Score=171.57 Aligned_cols=260 Identities=17% Similarity=0.184 Sum_probs=194.7
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeee-------ccC-----CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEec
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVER-------WGD-----PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP 82 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~ 82 (326)
-+.++++.+|.|.=|++.++. ....+..+ +.. ..+...+++ ..-+++++||++|..|..|.||+.
T Consensus 155 ~~~fsask~g~i~kw~v~tgk-~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~--~avS~Dgkylatgg~d~~v~Iw~~ 231 (479)
T KOG0299|consen 155 KRVFSASKDGTILKWDVLTGK-KDRYIIERDEVLKSHGNPLKESRKGHVKEILT--LAVSSDGKYLATGGRDRHVQIWDC 231 (479)
T ss_pred cceeecCCCcceeeeehhcCc-ccccccccchhhhhccCCCCcccccccceeEE--EEEcCCCcEEEecCCCceEEEecC
Confidence 488999999999999988771 11001101 111 122233333 344567779999999999999999
Q ss_pred cccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCC
Q 020454 83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS 162 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (326)
.+.+.+..+. .|.+.|.++++.. ....+++++.|..+++|+++...... . -..|+
T Consensus 232 ~t~ehv~~~~--------ghr~~V~~L~fr~--------gt~~lys~s~Drsvkvw~~~~~s~ve--------t-lyGHq 286 (479)
T KOG0299|consen 232 DTLEHVKVFK--------GHRGAVSSLAFRK--------GTSELYSASADRSVKVWSIDQLSYVE--------T-LYGHQ 286 (479)
T ss_pred cccchhhccc--------ccccceeeeeeec--------CccceeeeecCCceEEEehhHhHHHH--------H-HhCCc
Confidence 9888777655 6779999999765 55689999999999999988654321 1 12456
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i 241 (326)
..|..+.....++.+-+|+.|.++++|++.... .++... ...+-+++|.. ...|++|+.+|.|.+
T Consensus 287 d~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~-----------~~sidcv~~In---~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 287 DGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGG-----------EGSIDCVAFIN---DEHFVSGSDNGSIAL 352 (479)
T ss_pred cceeeechhcccceEEeccccceeEEEeccccceeeeeCC-----------CCCeeeEEEec---ccceeeccCCceEEE
Confidence 788888888778888888999999999995432 333322 13477888884 338999999999999
Q ss_pred EeCCCCCCceeEEee------------cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC----eEEEEEcceecceEE
Q 020454 242 YDTSAQRRPVMSFDF------------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----KLLGCFIGKCSGSIR 305 (326)
Q Consensus 242 wd~~~~~~~~~~~~~------------~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~----~~~~~~~~~~~~~v~ 305 (326)
|++... +|+.+... +..+|++++..|...++++|+.+|.|++|-+..+ .+++.++ ..+-|+
T Consensus 353 Ws~~KK-kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~~GfVN 429 (479)
T KOG0299|consen 353 WSLLKK-KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS--LVGFVN 429 (479)
T ss_pred eeeccc-CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc--cccEEE
Confidence 999866 66665541 1238999999999999999999999999998877 5566666 488999
Q ss_pred EEEECCCCCEEEEe
Q 020454 306 SIARHPTLPIIASC 319 (326)
Q Consensus 306 ~l~~~p~~~~l~s~ 319 (326)
+|+|++++..|++|
T Consensus 430 sl~f~~sgk~ivag 443 (479)
T KOG0299|consen 430 SLAFSNSGKRIVAG 443 (479)
T ss_pred EEEEccCCCEEEEe
Confidence 99999999966555
No 88
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=3.4e-24 Score=167.61 Aligned_cols=234 Identities=14% Similarity=0.191 Sum_probs=182.2
Q ss_pred CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~ 129 (326)
+...+++++..+ +.+++++|+.|..-.+|++.+++...++. .|...|+++.+.. ++.+|+++
T Consensus 63 H~~svFavsl~P--~~~l~aTGGgDD~AflW~~~~ge~~~elt--------gHKDSVt~~~Fsh--------dgtlLATG 124 (399)
T KOG0296|consen 63 HTDSVFAVSLHP--NNNLVATGGGDDLAFLWDISTGEFAGELT--------GHKDSVTCCSFSH--------DGTLLATG 124 (399)
T ss_pred cCCceEEEEeCC--CCceEEecCCCceEEEEEccCCcceeEec--------CCCCceEEEEEcc--------CceEEEec
Confidence 444555666554 66799999999999999999999766655 6778999998765 67789999
Q ss_pred ecCCcEEEEEccccccccccccceEEEEEc-cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (326)
Q Consensus 130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 208 (326)
..+|.|++|....... .|.+ .....|.-|.|||.+.+|+.|+.||.+-+|.+.++.....+.+|.
T Consensus 125 dmsG~v~v~~~stg~~----------~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~---- 190 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGE----------QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHN---- 190 (399)
T ss_pred CCCccEEEEEcccCce----------EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCC----
Confidence 9999999999765431 2222 235678899999999999999999999999999876666667755
Q ss_pred CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee--------------------------------
Q 020454 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-------------------------------- 256 (326)
Q Consensus 209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------------------------------- 256 (326)
..+++-.|.| +|++++++..||+|++||+.++ +|+..+..
T Consensus 191 -----~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg-~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~ 262 (399)
T KOG0296|consen 191 -----SPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTG-QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNN 262 (399)
T ss_pred -----CCcccccccC--CCceEEEEecCceEEEEecCCC-ceeEEecccccCcCCccccccccceeEeccCCccEEEEcc
Confidence 4467778998 6889999999999999999987 54444431
Q ss_pred -------------------cCCceEEEE---ecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC
Q 020454 257 -------------------RETPIKAVA---EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (326)
Q Consensus 257 -------------------~~~~i~~v~---~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 314 (326)
++..+.+|. ++..=.+.|+|+.||+|.|||+...++.+.+. | ..+|..+.|-+ ..
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-h-e~~V~~l~w~~-t~ 339 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-H-EDGVTKLKWLN-TD 339 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-C-CCceEEEEEcC-cc
Confidence 001122233 33334567899999999999999888777776 4 88999999998 78
Q ss_pred EEEEeccCccCC
Q 020454 315 IIASCGFLEAAS 326 (326)
Q Consensus 315 ~l~s~s~D~~~~ 326 (326)
+|++++.||.++
T Consensus 340 ~l~t~c~~g~v~ 351 (399)
T KOG0296|consen 340 YLLTACANGKVR 351 (399)
T ss_pred hheeeccCceEE
Confidence 999999999764
No 89
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=2.8e-25 Score=179.47 Aligned_cols=229 Identities=10% Similarity=0.109 Sum_probs=179.5
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
.++++++.|+.||+||++++ +...++..... .. ++.+..+. .+.+++|..|+.|+.||+++++++.++.
T Consensus 271 ~~fLS~sfD~~lKlwDtETG-----~~~~~f~~~~~-~~--cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd-- 339 (503)
T KOG0282|consen 271 TSFLSASFDRFLKLWDTETG-----QVLSRFHLDKV-PT--CVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYD-- 339 (503)
T ss_pred Ceeeeeecceeeeeeccccc-----eEEEEEecCCC-ce--eeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHH--
Confidence 68999999999999999999 67666654322 22 23333222 4689999999999999999999988887
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.|-+.|..+.+++ .+..+++.++|+.+++|+....-. ++...-...-.+.++..+|++
T Consensus 340 ------~hLg~i~~i~F~~--------~g~rFissSDdks~riWe~~~~v~--------ik~i~~~~~hsmP~~~~~P~~ 397 (503)
T KOG0282|consen 340 ------RHLGAILDITFVD--------EGRRFISSSDDKSVRIWENRIPVP--------IKNIADPEMHTMPCLTLHPNG 397 (503)
T ss_pred ------hhhhheeeeEEcc--------CCceEeeeccCccEEEEEcCCCcc--------chhhcchhhccCcceecCCCC
Confidence 4457899899888 678999999999999999765431 111111122357789999999
Q ss_pred CEEEEecCCCeEEEEECCCcee---eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 251 (326)
++++.-+.|+.|.+|.+...-. ...+++|. ...+-..+.|+| +|.+|++|..||.+.+||.++. +.+
T Consensus 398 ~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~-------vaGys~~v~fSp--DG~~l~SGdsdG~v~~wdwkt~-kl~ 467 (503)
T KOG0282|consen 398 KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS-------VAGYSCQVDFSP--DGRTLCSGDSDGKVNFWDWKTT-KLV 467 (503)
T ss_pred CeehhhccCceEEEEecccccccCHhhhhccee-------ccCceeeEEEcC--CCCeEEeecCCccEEEeechhh-hhh
Confidence 9999999999999999764221 22233333 335566889998 7789999999999999999987 568
Q ss_pred eEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEE
Q 020454 252 MSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVD 286 (326)
Q Consensus 252 ~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd 286 (326)
..++.|+.++..+.|+|. ...+|+++.||.|++||
T Consensus 468 ~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 468 SKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 899999999999999997 46888999999999996
No 90
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=3.9e-23 Score=168.19 Aligned_cols=265 Identities=14% Similarity=0.148 Sum_probs=196.3
Q ss_pred eeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCC
Q 020454 18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDS 97 (326)
Q Consensus 18 ~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~ 97 (326)
+..--.|.+..|+.+++ ...+....|..++. ..+++++|....+ +++|.++|.|.||+..+.+..+...
T Consensus 216 iit~Gk~H~~Fw~~~~~--~l~k~~~~fek~ek-k~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~----- 284 (626)
T KOG2106|consen 216 IITCGKGHLYFWTLRGG--SLVKRQGIFEKREK-KFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVH----- 284 (626)
T ss_pred EEEeCCceEEEEEccCC--ceEEEeeccccccc-eEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEee-----
Confidence 33344688999998877 33333334444444 7888888877666 9999999999999997777655554
Q ss_pred CCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc---ccccccceEEEE-----------------
Q 020454 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---SAESSCSTVKSW----------------- 157 (326)
Q Consensus 98 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~---~~~~~~~~~~~~----------------- 157 (326)
.|++.|.+|.... ++.|++++.|..|..||-+.... .....-+.+|..
T Consensus 285 ---aH~ggv~~L~~lr---------~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 285 ---AHDGGVFSLCMLR---------DGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL 352 (626)
T ss_pred ---ecCCceEEEEEec---------CccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence 5567888888654 57899999999999999443221 001111222211
Q ss_pred -----------EccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454 158 -----------NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (326)
Q Consensus 158 -----------~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 226 (326)
...+..+...++.+|+.+++++++.|+.+++|+ ..++++.... ...+.++.|+|.
T Consensus 353 ~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~----------~d~~~~~~fhps-- 418 (626)
T KOG2106|consen 353 QGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII----------EDPAECADFHPS-- 418 (626)
T ss_pred EeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe----------cCceeEeeccCc--
Confidence 112234577999999999999999999999999 5566655332 134668899994
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC-CeEEEEEcceecceEE
Q 020454 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIR 305 (326)
Q Consensus 227 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~ 305 (326)
+ .++.|+..|...+.|..+. . +.++.....++++|+|+|+|.+||+|+.|+.|++|-+.. ++...++..++..+|+
T Consensus 419 g-~va~Gt~~G~w~V~d~e~~-~-lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~it 495 (626)
T KOG2106|consen 419 G-VVAVGTATGRWFVLDTETQ-D-LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPIT 495 (626)
T ss_pred c-eEEEeeccceEEEEecccc-e-eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeE
Confidence 4 8999999999999999974 4 344444489999999999999999999999999999875 4455445444367999
Q ss_pred EEEECCCCCEEEEeccC
Q 020454 306 SIARHPTLPIIASCGFL 322 (326)
Q Consensus 306 ~l~~~p~~~~l~s~s~D 322 (326)
.|+|++|+++|.+-|.|
T Consensus 496 hLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 496 HLDWSSDSQFLVSNSGD 512 (626)
T ss_pred EeeecCCCceEEeccCc
Confidence 99999999999998876
No 91
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=9.6e-24 Score=185.97 Aligned_cols=282 Identities=12% Similarity=0.094 Sum_probs=203.4
Q ss_pred eeeeeec--CcccEEEEEecCCc------CC-CcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc-
Q 020454 15 LRALTFD--SLGLIKVIEARGEH------GG-VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN- 84 (326)
Q Consensus 15 ~~l~~~~--~~G~i~vw~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~- 84 (326)
.+++||+ .||.++||+...-. .+ .++...+..++.. .+. |.-+++++.+||+|+.|+.|.||+...
T Consensus 26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~--sv~--CVR~S~dG~~lAsGSDD~~v~iW~~~~~ 101 (942)
T KOG0973|consen 26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG--SVN--CVRFSPDGSYLASGSDDRLVMIWERAEI 101 (942)
T ss_pred eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC--cee--EEEECCCCCeEeeccCcceEEEeeeccc
Confidence 7899999 89999999976431 01 2223223332333 322 234567788999999999999999862
Q ss_pred ---cce--------eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccce
Q 020454 85 ---GDL--------RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST 153 (326)
Q Consensus 85 ---~~~--------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~ 153 (326)
..+ .+..+... ....|++.|..+.+.+ ++..+++++.|++|.+|+....+ .
T Consensus 102 ~~~~~fgs~g~~~~vE~wk~~~--~l~~H~~DV~Dv~Wsp--------~~~~lvS~s~DnsViiwn~~tF~--------~ 163 (942)
T KOG0973|consen 102 GSGTVFGSTGGAKNVESWKVVS--ILRGHDSDVLDVNWSP--------DDSLLVSVSLDNSVIIWNAKTFE--------L 163 (942)
T ss_pred CCcccccccccccccceeeEEE--EEecCCCccceeccCC--------CccEEEEecccceEEEEccccce--------e
Confidence 000 00000000 0125678888888766 67899999999999999966543 5
Q ss_pred EEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE
Q 020454 154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (326)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~ 233 (326)
+++.+ .|...|-.+.|+|-|+|||+-+.|++|++|++.+-.....+..+..+.. -......+.|+| +|++|++.
T Consensus 164 ~~vl~-~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~---~~T~f~RlSWSP--DG~~las~ 237 (942)
T KOG0973|consen 164 LKVLR-GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP---LTTFFLRLSWSP--DGHHLASP 237 (942)
T ss_pred eeeee-cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC---CcceeeecccCC--CcCeecch
Confidence 55555 3567899999999999999999999999999776555555444433221 224678899999 77788886
Q ss_pred eC----CCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-----CC------------eEEEEcCCCcEEEEECCCCeE
Q 020454 234 TN----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-----SF------------NIYIGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 234 ~~----dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-----~~------------~l~~g~~dg~v~iwd~~~~~~ 292 (326)
.. -..+.|.+-.+. ..-..+-+|..++.++.|+|. .. .+|+|+.|++|.||.....++
T Consensus 238 nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred hhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 32 336788887655 445778899999999999972 11 567999999999999988888
Q ss_pred EEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 293 LGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 293 ~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+.....-....|..+.|+|||-.|+.||.||.+
T Consensus 317 l~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV 349 (942)
T KOG0973|consen 317 LFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTV 349 (942)
T ss_pred hhhhhhhhcCceeeeeEcCCCCeEEEEecCCeE
Confidence 765543236699999999999999999999975
No 92
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.1e-23 Score=160.90 Aligned_cols=233 Identities=18% Similarity=0.170 Sum_probs=174.1
Q ss_pred eEEEEEeeeCCCCCeEEEEecCCcEEEEeccc-cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (326)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~ 131 (326)
.+.++.|.+ ....++++|+-||+||+|+++. |.+..... +.+++++.++.|.. ++.++++++.
T Consensus 29 sIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~-------~~~~~PvL~v~Wsd--------dgskVf~g~~ 92 (347)
T KOG0647|consen 29 SISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ-------QSHDGPVLDVCWSD--------DGSKVFSGGC 92 (347)
T ss_pred chheeEecc-ccCceEEecccCCceEEEEEecCCcccchhh-------hccCCCeEEEEEcc--------CCceEEeecc
Confidence 333444544 3455788999999999999976 34433222 36779999999866 6789999999
Q ss_pred CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC--EEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK--FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG 209 (326)
Q Consensus 132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 209 (326)
|+.+++||+...+. ..+ ..|..+|.++.|-+... .|+||+.|.+|+.||.+...++.++.-
T Consensus 93 Dk~~k~wDL~S~Q~------~~v----~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L------- 155 (347)
T KOG0647|consen 93 DKQAKLWDLASGQV------SQV----AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL------- 155 (347)
T ss_pred CCceEEEEccCCCe------eee----eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-------
Confidence 99999999876541 111 13567899999887664 899999999999999998888887543
Q ss_pred cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
|..++++... ..+++++..++.|.+|+++......+..+ .-+..+++|+..++....+.|+-+|.+.|..+.
T Consensus 156 ---PeRvYa~Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id 228 (347)
T KOG0647|consen 156 ---PERVYAADVL----YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYID 228 (347)
T ss_pred ---cceeeehhcc----CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecC
Confidence 3445555443 22889999999999999986522111111 123468999999998888999999999999998
Q ss_pred CC--eEEEEEccee--------cceEEEEEECCCCCEEEEeccCccC
Q 020454 289 TG--KLLGCFIGKC--------SGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 289 ~~--~~~~~~~~~~--------~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.+ +.-..|+.|. --.|++|+|+|.-..|+|+|.||+-
T Consensus 229 ~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 229 DPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF 275 (347)
T ss_pred CCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceE
Confidence 76 4445677772 1258899999998999999999974
No 93
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.7e-24 Score=156.97 Aligned_cols=243 Identities=16% Similarity=0.151 Sum_probs=180.6
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
.||+|++.|++|||++.+.. +..++..... .++..+.-+.|.+...+.+||+++-||.|.||.-++++..+....
T Consensus 24 krlATcsSD~tVkIf~v~~n--~~s~ll~~L~--Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~- 98 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIFEVRNN--GQSKLLAELT--GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH- 98 (299)
T ss_pred ceeeeecCCccEEEEEEcCC--CCceeeeEec--CCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-
Confidence 68999999999999999876 3333444444 344456678888888999999999999999999988876554443
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC-
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 173 (326)
..|+..+.++++.+++ .+-.|+.++.||.|.+.+++....- ..-++ ...|...|+++.+.|.
T Consensus 99 -----~~h~~SVNsV~waphe------ygl~LacasSDG~vsvl~~~~~g~w-----~t~ki-~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 99 -----AAHSASVNSVAWAPHE------YGLLLACASSDGKVSVLTYDSSGGW-----TTSKI-VFAHEIGVNSVSWAPAS 161 (299)
T ss_pred -----hhhcccceeecccccc------cceEEEEeeCCCcEEEEEEcCCCCc-----cchhh-hhccccccceeeecCcC
Confidence 3677889988876644 4557888999999999998765211 11112 2245667888888884
Q ss_pred --C-----------CEEEEecCCCeEEEEECCCceeee--eecCCCCCCCCcCCCCceeeeEEeecCC--CcEEEEEeCC
Q 020454 174 --E-----------KFSLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTND 236 (326)
Q Consensus 174 --~-----------~~l~sg~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~~l~~~~~d 236 (326)
| +.|++|+.|+.|+||+..+++-+. .+.. |..||+.++|.|... ...|+++++|
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~---------H~dwVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG---------HKDWVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh---------cchhhhhhhhccccCCCceeeEEecCC
Confidence 3 569999999999999998763211 1333 448999999999632 2489999999
Q ss_pred CeEEEEeCCCCCCce--eEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 237 HQVRLYDTSAQRRPV--MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 237 g~v~iwd~~~~~~~~--~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
|+|.||-.+....+- .-++.....+..+.||+.|+.|++++.|+.|.+|.-.
T Consensus 233 g~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 233 GTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 999999877321211 1122345679999999999999999999999999754
No 94
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.4e-24 Score=176.92 Aligned_cols=254 Identities=16% Similarity=0.136 Sum_probs=175.2
Q ss_pred CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce-eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE
Q 020454 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (326)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l 126 (326)
+.+...+.++.++. .+-.|++|+.|-+|++||+..... ...++.+.+ .+...|..+.+.. .++.|
T Consensus 164 ~hgtk~Vsal~~Dp--~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P----~E~h~i~sl~ys~--------Tg~~i 229 (641)
T KOG0772|consen 164 KHGTKIVSALAVDP--SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP----CETHQINSLQYSV--------TGDQI 229 (641)
T ss_pred cCCceEEEEeeecC--CCceeeeccccceEEEEecccccccchhhhccCc----ccccccceeeecC--------CCCeE
Confidence 34556666666654 455899999999999999963321 122333222 3456788888765 67899
Q ss_pred EEEecCCcEEEEEcccccccccc-ccceEEE-EEc-cCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCcee-eeeec
Q 020454 127 LTCTTKGKASMRSIEVTKVSAES-SCSTVKS-WNV-CASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK-IWTAK 201 (326)
Q Consensus 127 ~~~~~~g~v~i~~~~~~~~~~~~-~~~~~~~-~~~-~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~-~~~~~ 201 (326)
++.+...+.+++|-+........ .|..|+- .+. .|-..++|-.|||.. ..|++++.|++++|||+.+.+. +..++
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence 99999999999996654322111 1222211 111 123358899999975 7788999999999999986542 22222
Q ss_pred CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC-CCcee-EEeecCC--ceEEEEecCCCCeEEEEc
Q 020454 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-RRPVM-SFDFRET--PIKAVAEEPDSFNIYIGN 277 (326)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~-~~~~~~~--~i~~v~~s~~~~~l~~g~ 277 (326)
...... ....++.++|+| ++++||+|+.||.|.+|+.+.. .++.. .-+.|.. .|++|+||++|++|++-+
T Consensus 310 ~k~~~g----~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 310 TKPAGG----KRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred eccCCC----cccCceeeecCC--CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 211111 124688999998 6779999999999999997643 12333 3345655 899999999999999999
Q ss_pred CCCcEEEEECCCC-eEEEEEcce-ecceEEEEEECCCCCEEEEecc
Q 020454 278 GSGDLASVDIRTG-KLLGCFIGK-CSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 278 ~dg~v~iwd~~~~-~~~~~~~~~-~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
.|+++++||+++. +++..+.+- ..-+-+..+|+|+.++|++|..
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 9999999999975 455544431 1335668899999999999863
No 95
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.9e-24 Score=171.20 Aligned_cols=256 Identities=17% Similarity=0.155 Sum_probs=187.9
Q ss_pred CcccEEEEEecCCcCCCcceeeeccCCCCC--ceEEEEEeeeCCCCCeEEEEec-CCcEEEEeccccceeeeecccCCCC
Q 020454 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSS--NCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSG 98 (326)
Q Consensus 22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~~~~~~~~ 98 (326)
+.+.+.+||++++ ....+|...... ....++ ...+++++.. -..|.+|.+..........
T Consensus 16 d~~~~~~~dl~TG-----t~~~~ykg~~~a~~~sl~~l------~~~yllsaq~~rp~l~vw~i~k~~~~~q~~------ 78 (476)
T KOG0646|consen 16 DPINCIVWDLRTG-----TSLLQYKGSYLAQAASLTAL------NNEYLLSAQLKRPLLHVWEILKKDQVVQYI------ 78 (476)
T ss_pred CCcceeEEecCCC-----ceeEEecCcccccchhhhhh------chhheeeecccCccccccccCchhhhhhhc------
Confidence 4567899999988 444455543111 111111 1134555544 4679999986544333111
Q ss_pred CCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE
Q 020454 99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL 178 (326)
Q Consensus 99 ~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 178 (326)
.-.+++.+++..+ .+.++++++..|.+++|.+.... .+.+| ..|-..|+|+.|+-|+.+|+
T Consensus 79 --v~Pg~v~al~s~n--------~G~~l~ag~i~g~lYlWelssG~--------LL~v~-~aHYQ~ITcL~fs~dgs~ii 139 (476)
T KOG0646|consen 79 --VLPGPVHALASSN--------LGYFLLAGTISGNLYLWELSSGI--------LLNVL-SAHYQSITCLKFSDDGSHII 139 (476)
T ss_pred --ccccceeeeecCC--------CceEEEeecccCcEEEEEecccc--------HHHHH-HhhccceeEEEEeCCCcEEE
Confidence 2227888888766 55677777799999999987654 34455 35678999999999999999
Q ss_pred EecCCCeEEEEECCC---------ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454 179 FGGKGVEVNVWDLDK---------CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (326)
Q Consensus 179 sg~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~ 249 (326)
+|++||.|.+|++-. .+++..+..| .-.|+++...+.....++++.+.|.++++||+..+ .
T Consensus 140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H---------tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~ 209 (476)
T KOG0646|consen 140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH---------TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-V 209 (476)
T ss_pred ecCCCccEEEEEEEeecccccCCCccceeeeccC---------cceeEEEEecCCCccceEEEecCCceEEEEEeccc-e
Confidence 999999999999753 1233333333 34678887776544458999999999999999987 5
Q ss_pred ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC----------------eEEEEEcceecc--eEEEEEECC
Q 020454 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----------------KLLGCFIGKCSG--SIRSIARHP 311 (326)
Q Consensus 250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~----------------~~~~~~~~~~~~--~v~~l~~~p 311 (326)
.+.++.. ...+.+++.+|-++.+++|+.+|.|.+.++... .....+.|| .+ .|++|+.+-
T Consensus 210 LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh-~~~~~ITcLais~ 287 (476)
T KOG0646|consen 210 LLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH-ENESAITCLAIST 287 (476)
T ss_pred eeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc-cCCcceeEEEEec
Confidence 5666654 488999999999999999999999999987642 345567788 77 999999999
Q ss_pred CCCEEEEeccCccC
Q 020454 312 TLPIIASCGFLEAA 325 (326)
Q Consensus 312 ~~~~l~s~s~D~~~ 325 (326)
|+.+|++|+.||.+
T Consensus 288 DgtlLlSGd~dg~V 301 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKV 301 (476)
T ss_pred CccEEEeeCCCCCE
Confidence 99999999999976
No 96
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.8e-23 Score=158.89 Aligned_cols=258 Identities=13% Similarity=0.174 Sum_probs=195.1
Q ss_pred cccccCCCCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEec
Q 020454 3 RTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP 82 (326)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~ 82 (326)
+...+++..|..--+++|+.|-.|+|||+.+. .+...+ - .+...+.++.|........|++|+.||.|.+|+.
T Consensus 42 H~~sitavAVs~~~~aSGssDetI~IYDm~k~-~qlg~l----l--~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 42 HAGSITALAVSGPYVASGSSDETIHIYDMRKR-KQLGIL----L--SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred cccceeEEEecceeEeccCCCCcEEEEeccch-hhhcce----e--ccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 45567777788889999999999999999877 222222 1 3455667788877666668999999999999999
Q ss_pred cccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCC
Q 020454 83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS 162 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (326)
..-+.+..++ .|.+.|+.++..+ .+..-++.+.|+.+++|++-... ...+.++.+
T Consensus 115 ~~W~~~~slK--------~H~~~Vt~lsiHP--------S~KLALsVg~D~~lr~WNLV~Gr--------~a~v~~L~~- 169 (362)
T KOG0294|consen 115 GSWELLKSLK--------AHKGQVTDLSIHP--------SGKLALSVGGDQVLRTWNLVRGR--------VAFVLNLKN- 169 (362)
T ss_pred CCeEEeeeec--------ccccccceeEecC--------CCceEEEEcCCceeeeehhhcCc--------cceeeccCC-
Confidence 8777777776 5667799888766 66788999999999999976533 222333332
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw 242 (326)
.-..+.|+|+|.+++.++.+ .|-||.+.+......+.+. ..+.++.|. ++..|++|..|+.|++|
T Consensus 170 -~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~----------~r~l~~~~l---~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 170 -KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP----------KRILCATFL---DGSELLVGGDNEWISLK 234 (362)
T ss_pred -cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc----------ccceeeeec---CCceEEEecCCceEEEe
Confidence 33448999999988887765 7889999876665544332 224455665 45599999999999999
Q ss_pred eCCCCCCceeEEeecCCceEEEEe--cCCCCeEEEEcCCCcEEEEECCCC-----eEEEEEcceecceEEEEEEC
Q 020454 243 DTSAQRRPVMSFDFRETPIKAVAE--EPDSFNIYIGNGSGDLASVDIRTG-----KLLGCFIGKCSGSIRSIARH 310 (326)
Q Consensus 243 d~~~~~~~~~~~~~~~~~i~~v~~--s~~~~~l~~g~~dg~v~iwd~~~~-----~~~~~~~~~~~~~v~~l~~~ 310 (326)
|.... .+...+..|..+|.++.+ .|++.+|++++.||.|++||++.. +++..+. ...+++|+...
T Consensus 235 D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n--~~~RltCl~~~ 306 (362)
T KOG0294|consen 235 DTDSD-TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELN--TNVRLTCLRVK 306 (362)
T ss_pred ccCCC-ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEee--cCCccceeeeh
Confidence 99975 788999999999999884 456889999999999999999875 4555554 25566676554
No 97
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=6e-23 Score=157.39 Aligned_cols=231 Identities=14% Similarity=0.135 Sum_probs=176.4
Q ss_pred CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (326)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~ 130 (326)
.+.+..+.|. +....|++++.||++++|+....+....+. +..++..+++. ++..+++++
T Consensus 13 ~d~IS~v~f~--~~~~~LLvssWDgslrlYdv~~~~l~~~~~---------~~~plL~c~F~---------d~~~~~~G~ 72 (323)
T KOG1036|consen 13 EDGISSVKFS--PSSSDLLVSSWDGSLRLYDVPANSLKLKFK---------HGAPLLDCAFA---------DESTIVTGG 72 (323)
T ss_pred hhceeeEEEc--CcCCcEEEEeccCcEEEEeccchhhhhhee---------cCCceeeeecc---------CCceEEEec
Confidence 4566677776 334468889999999999998765544443 44789988864 356899999
Q ss_pred cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCc
Q 020454 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (326)
Q Consensus 131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 210 (326)
.||.|+.+|++..+.. .+ ..|...+.|+...+....+++|+.|++|++||.+..........
T Consensus 73 ~dg~vr~~Dln~~~~~------~i----gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-------- 134 (323)
T KOG1036|consen 73 LDGQVRRYDLNTGNED------QI----GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-------- 134 (323)
T ss_pred cCceEEEEEecCCcce------ee----ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc--------
Confidence 9999999999865421 11 23577899999999889999999999999999987444433222
Q ss_pred CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
+..|.++... ++.|++|+.|..|.+||+|+...+.+..+ .-+.++++|++-|++.-.++++-||.|.+=.+..
T Consensus 135 --~kkVy~~~v~----g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~ 208 (323)
T KOG1036|consen 135 --GKKVYCMDVS----GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDD 208 (323)
T ss_pred --CceEEEEecc----CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCC
Confidence 2346666553 45899999999999999998766553322 2356899999999988999999999998866665
Q ss_pred C----eEEEEEccee--------cceEEEEEECCCCCEEEEeccCccC
Q 020454 290 G----KLLGCFIGKC--------SGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 290 ~----~~~~~~~~~~--------~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
. +..+.|+.|. --+|++|+|||--..+||||.||.+
T Consensus 209 s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V 256 (323)
T KOG1036|consen 209 SEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIV 256 (323)
T ss_pred chHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceE
Confidence 4 4455677662 2379999999998999999999975
No 98
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.5e-24 Score=170.58 Aligned_cols=225 Identities=14% Similarity=0.133 Sum_probs=178.7
Q ss_pred eeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454 60 DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (326)
Q Consensus 60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~ 139 (326)
..++.+.+|+.|...|.|.+|.+.+|.++..+. .|-..|+++.+.. ++..+++++.||.|.+|.
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~--------aHYQ~ITcL~fs~--------dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLS--------AHYQSITCLKFSD--------DGSHIITGSKDGAVLVWL 151 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHH--------hhccceeEEEEeC--------CCcEEEecCCCccEEEEE
Confidence 445566677777799999999999999887765 5557899999876 778999999999999999
Q ss_pred cccccccccc-ccceEEEEEccCCCceEEEEEcCCC--CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCce
Q 020454 140 IEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF 216 (326)
Q Consensus 140 ~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 216 (326)
+-..-.+... ....++.|. .|.-+|+.+...+.+ ..|+|++.|.++++||+..+..+.++.. |..+
T Consensus 152 l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f----------p~si 220 (476)
T KOG0646|consen 152 LTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF----------PSSI 220 (476)
T ss_pred EEeecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec----------CCcc
Confidence 7653322111 334667777 456789999888764 7899999999999999999988776433 4568
Q ss_pred eeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC---------------CceeEEeecCC--ceEEEEecCCCCeEEEEcCC
Q 020454 217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---------------RPVMSFDFRET--PIKAVAEEPDSFNIYIGNGS 279 (326)
Q Consensus 217 ~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~---------------~~~~~~~~~~~--~i~~v~~s~~~~~l~~g~~d 279 (326)
++++..|. ...+..|+.+|.|.+.++.... ..+..+.+|.. +|+|++++-||..|++|+.|
T Consensus 221 ~av~lDpa--e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 221 KAVALDPA--ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred eeEEEccc--ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence 89999985 3489999999999998865321 12345557776 99999999999999999999
Q ss_pred CcEEEEECCCCeEEEEEcceecceEEEEEECCCCC
Q 020454 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (326)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 314 (326)
|.|.|||+.+.++++++..- .++|+.+.+.|-.+
T Consensus 299 g~VcvWdi~S~Q~iRtl~~~-kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 299 GKVCVWDIYSKQCIRTLQTS-KGPVTNLQINPLER 332 (476)
T ss_pred CCEEEEecchHHHHHHHhhh-ccccceeEeecccc
Confidence 99999999999988887743 88999999976433
No 99
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.6e-24 Score=170.05 Aligned_cols=232 Identities=10% Similarity=0.109 Sum_probs=179.4
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.|++|+.+-.+++||+.++ .....++.. ....+..++|.++ +..+++|+.|++|..||+ +|+.+...+.
T Consensus 282 ryLlaCg~~e~~~lwDv~tg-----d~~~~y~~~-~~~S~~sc~W~pD--g~~~V~Gs~dr~i~~wdl-Dgn~~~~W~g- 351 (519)
T KOG0293|consen 282 RYLLACGFDEVLSLWDVDTG-----DLRHLYPSG-LGFSVSSCAWCPD--GFRFVTGSPDRTIIMWDL-DGNILGNWEG- 351 (519)
T ss_pred CeEEecCchHheeeccCCcc-----hhhhhcccC-cCCCcceeEEccC--CceeEecCCCCcEEEecC-Ccchhhcccc-
Confidence 45888888889999999988 444445433 3344445666544 446999999999999999 4555455443
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.....|.+++... ++.++++...|..+++++.+..... +. .....+|+++.++.++
T Consensus 352 ------vr~~~v~dlait~--------Dgk~vl~v~~d~~i~l~~~e~~~dr-----~l-----ise~~~its~~iS~d~ 407 (519)
T KOG0293|consen 352 ------VRDPKVHDLAITY--------DGKYVLLVTVDKKIRLYNREARVDR-----GL-----ISEEQPITSFSISKDG 407 (519)
T ss_pred ------cccceeEEEEEcC--------CCcEEEEEecccceeeechhhhhhh-----cc-----ccccCceeEEEEcCCC
Confidence 2224577777655 7789999999999999997654311 11 2346789999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
+++++--.+..|++||++..+.+.+..+|+.... +-.-+|--. +..++++|+.|++|+||+.+++ .++..+
T Consensus 408 k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~f-------iIrSCFgg~-~~~fiaSGSED~kvyIWhr~sg-kll~~L 478 (519)
T KOG0293|consen 408 KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHF-------IIRSCFGGG-NDKFIASGSEDSKVYIWHRISG-KLLAVL 478 (519)
T ss_pred cEEEEEcccCeeEEeecchhhHHHHhhcccccce-------EEEeccCCC-CcceEEecCCCceEEEEEccCC-ceeEee
Confidence 9999999999999999998888888888875542 334456543 3458999999999999999988 789999
Q ss_pred eecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCC
Q 020454 255 DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 255 ~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~ 289 (326)
.+|...|++|+|+|.. .++|+++.||+|+||-...
T Consensus 479 sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999964 6778999999999998753
No 100
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=181.68 Aligned_cols=216 Identities=14% Similarity=0.187 Sum_probs=182.3
Q ss_pred CCeEEEEecCCcEEEEeccccceeee-ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~ 143 (326)
..++++++.+++|++|+..++..+.. +. +|.+.+.++.+.. .++++++|+.|.++++||....
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~--------GH~g~V~~l~~~~--------~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLV--------GHFGGVWGLAFPS--------GGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeecc--------CCCCCceeEEEec--------CCCEEEEEecCCcEEeEecCCC
Confidence 34699999999999999988887666 44 7889999999743 3689999999999999997654
Q ss_pred ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454 144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (326)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 223 (326)
. .+..+. .+...+.++... +.++++|+.|.+|++|++.++..+..+.+|. .+|.++...
T Consensus 282 ~--------C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~---------~~V~~v~~~- 340 (537)
T KOG0274|consen 282 E--------CTHSLQ-GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHT---------GPVNCVQLD- 340 (537)
T ss_pred c--------EEEEec-CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecccc---------ccEEEEEec-
Confidence 4 455554 356678888775 4777889999999999999999888877644 568888886
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEcceecc
Q 020454 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSG 302 (326)
Q Consensus 224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~ 302 (326)
+.++++|+.|++|++||++++ +++.++.+|..+|+++.+.+. ..+++|+.|+.|++||+++. +++..+.+| ..
T Consensus 341 ---~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h-~~ 414 (537)
T KOG0274|consen 341 ---EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH-TS 414 (537)
T ss_pred ---CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCC-cc
Confidence 349999999999999999987 789999999999999988654 89999999999999999999 999999998 88
Q ss_pred eEEEEEECCCCCEEEEeccCccC
Q 020454 303 SIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 303 ~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
-|..+.+ .+++|+++++|+.+
T Consensus 415 ~v~~l~~--~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 415 LVSSLLL--RDNFLVSSSADGTI 435 (537)
T ss_pred ccccccc--ccceeEeccccccE
Confidence 8877766 67799999999965
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7.1e-24 Score=157.42 Aligned_cols=235 Identities=12% Similarity=0.119 Sum_probs=170.4
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
++.|++++.|++|+||+.+++.....+..+ .+|.+|+.-+.+.++. .++.|++++.||+|.||.-....
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L-----~Gh~GPVwqv~wahPk------~G~iLAScsYDgkVIiWke~~g~ 91 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAEL-----TGHSGPVWKVAWAHPK------FGTILASCSYDGKVIIWKEENGR 91 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEe-----cCCCCCeeEEeecccc------cCcEeeEeecCceEEEEecCCCc
Confidence 457999999999999999765532222221 3888999988876643 57889999999999999854321
Q ss_pred cccccccceEEEEEccCCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454 145 VSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (326)
-.....+. .+...|++++|.|. |-.|++++.||.|.|.+.+.... ... ......|+..|++++|.
T Consensus 92 ------w~k~~e~~-~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-w~t-----~ki~~aH~~GvnsVswa 158 (299)
T KOG1332|consen 92 ------WTKAYEHA-AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-WTT-----SKIVFAHEIGVNSVSWA 158 (299)
T ss_pred ------hhhhhhhh-hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC-ccc-----hhhhhccccccceeeec
Confidence 11112222 34678999999886 57899999999999999875411 000 01112245678899998
Q ss_pred ecCC-C-----------cEEEEEeCCCeEEEEeCCCCC-CceeEEeecCCceEEEEecCC----CCeEEEEcCCCcEEEE
Q 020454 223 SIDD-H-----------RKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPD----SFNIYIGNGSGDLASV 285 (326)
Q Consensus 223 p~~~-~-----------~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~----~~~l~~g~~dg~v~iw 285 (326)
|..- | +.|++|+.|..|+||+..... .....+..|...|+.++|.|. -.+|++++.||++.||
T Consensus 159 pa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 159 PASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred CcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 8521 1 579999999999999988642 123458899999999999997 3589999999999999
Q ss_pred ECCCC--eEE-EEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 286 DIRTG--KLL-GCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 286 d~~~~--~~~-~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
..+.. ... ..+... ...+..+.|++.|.+|+.++.|..
T Consensus 239 t~~~e~e~wk~tll~~f-~~~~w~vSWS~sGn~LaVs~GdNk 279 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEF-PDVVWRVSWSLSGNILAVSGGDNK 279 (299)
T ss_pred EecCccCcccccccccC-CcceEEEEEeccccEEEEecCCcE
Confidence 87632 111 112233 678999999999999999988864
No 102
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.1e-24 Score=180.12 Aligned_cols=268 Identities=13% Similarity=0.174 Sum_probs=188.7
Q ss_pred eeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEE--EEEeeeCCCCCeEEEEecCCcEEEEeccc---cceeeeec
Q 020454 18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVL--AASIDDSQNDPLLAVARKNGLTDILNPLN---GDLRVAIS 92 (326)
Q Consensus 18 ~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~g~~dg~i~i~~~~~---~~~~~~~~ 92 (326)
+.....-.++|+.++.. .-..++...++..+ ...+. .+.|. .-..++||+++.+|.|.+||+.. .+.+..+.
T Consensus 54 iv~AGrs~lklyai~~~-~~~~~~~~~~k~kq-n~~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~ 130 (839)
T KOG0269|consen 54 IVVAGRSLLKLYAINPN-DFSEKCNHRFKTKQ-NKFYSAADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN 130 (839)
T ss_pred eEEecccceeeEeeCcc-cCCcceeeeccccc-ceeeehhhcccc-cchhhhheeecCCCcEEEEecCccccchhhhHhh
Confidence 33334456788887755 22223333332211 11111 12233 33456899999999999999975 33333333
Q ss_pred ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (326)
Q Consensus 93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (326)
.|+..+..+.+... ..+.|++|+.||.|++||++.... ...+. ...+.|+.+.|+|
T Consensus 131 --------EH~Rs~~~ldfh~t-------ep~iliSGSQDg~vK~~DlR~~~S--------~~t~~-~nSESiRDV~fsp 186 (839)
T KOG0269|consen 131 --------EHERSANKLDFHST-------EPNILISGSQDGTVKCWDLRSKKS--------KSTFR-SNSESIRDVKFSP 186 (839)
T ss_pred --------hhccceeeeeeccC-------CccEEEecCCCceEEEEeeecccc--------ccccc-ccchhhhceeecc
Confidence 56677887876542 457899999999999999987552 11222 1456899999999
Q ss_pred C-CCEEEEecCCCeEEEEECCCcee-eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-C
Q 020454 173 S-EKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-R 249 (326)
Q Consensus 173 ~-~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-~ 249 (326)
. +++|+++...|.+++||++..+. .+++..|. +.|.++.|+| ++.+||+|+.|++|+|||+...+ .
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~---------GpV~c~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHN---------GPVLCLNWHP--NREWLATGGRDKMVKIWDMTDSRAK 255 (839)
T ss_pred CCCceEEEecCCceEEEeeccCchhHHHHhhccc---------CceEEEeecC--CCceeeecCCCccEEEEeccCCCcc
Confidence 5 58999999999999999997543 44444443 6799999999 45599999999999999988542 3
Q ss_pred ceeEEeecCCceEEEEecCCCC-eEEEEc--CCCcEEEEECCCCeE-EEEEcceecceEEEEEECC-CCCEEEEeccCcc
Q 020454 250 PVMSFDFRETPIKAVAEEPDSF-NIYIGN--GSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHP-TLPIIASCGFLEA 324 (326)
Q Consensus 250 ~~~~~~~~~~~i~~v~~s~~~~-~l~~g~--~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~~p-~~~~l~s~s~D~~ 324 (326)
+..++.. ..++.+|.|-|... +|++++ .|-.|+|||++..-. ...|..| ...++.++|.. +...+.+||.||.
T Consensus 256 ~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH-~~~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 256 PKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH-TDSVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred ceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc-CccccceeccCCCceeeEeecCccH
Confidence 4445533 47899999999854 555554 366899999987654 4567888 99999999975 5568999999987
Q ss_pred C
Q 020454 325 A 325 (326)
Q Consensus 325 ~ 325 (326)
+
T Consensus 334 v 334 (839)
T KOG0269|consen 334 V 334 (839)
T ss_pred H
Confidence 5
No 103
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=2.3e-24 Score=160.56 Aligned_cols=229 Identities=17% Similarity=0.200 Sum_probs=176.0
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
.|.+++..|=.-||||+-++ .....|. +.-.+-++.|..+.+ +|++|+.+..+||||++..+. ....
T Consensus 72 ~~aasaaadftakvw~a~tg-----delhsf~---hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~A--pp~E- 138 (334)
T KOG0278|consen 72 TRAASAAADFTAKVWDAVTG-----DELHSFE---HKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKA--PPKE- 138 (334)
T ss_pred hhhhhhcccchhhhhhhhhh-----hhhhhhh---hhheeeeEEecccch--hhhccchHHHhhhhhccCCCC--Cchh-
Confidence 56777788888899999887 3333443 223344566654444 799999999999999975543 2222
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
...+.+.|..+.+.. .+..+++.+.|+.|++||..... .+.... .+.+|.++.++++|
T Consensus 139 ----~~ghtg~Ir~v~wc~--------eD~~iLSSadd~tVRLWD~rTgt--------~v~sL~--~~s~VtSlEvs~dG 196 (334)
T KOG0278|consen 139 ----ISGHTGGIRTVLWCH--------EDKCILSSADDKTVRLWDHRTGT--------EVQSLE--FNSPVTSLEVSQDG 196 (334)
T ss_pred ----hcCCCCcceeEEEec--------cCceEEeeccCCceEEEEeccCc--------EEEEEe--cCCCCcceeeccCC
Confidence 236778898888766 67889999999999999976543 333333 36789999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
++|.+ ...+.|..||..+-..+...+ .|..|.+.+.+|+. ..+++|+.|..++.||..++. .+..+
T Consensus 197 ~ilTi-a~gssV~Fwdaksf~~lKs~k----------~P~nV~SASL~P~k--~~fVaGged~~~~kfDy~Tge-Ei~~~ 262 (334)
T KOG0278|consen 197 RILTI-AYGSSVKFWDAKSFGLLKSYK----------MPCNVESASLHPKK--EFFVAGGEDFKVYKFDYNTGE-EIGSY 262 (334)
T ss_pred CEEEE-ecCceeEEeccccccceeecc----------CccccccccccCCC--ceEEecCcceEEEEEeccCCc-eeeec
Confidence 98866 466789999998877766543 23457788889964 489999999999999999884 46665
Q ss_pred -eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454 255 -DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 255 -~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~ 292 (326)
++|-++|.+|.|+|+|...++|++||+|++|-...++.
T Consensus 263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 78999999999999999999999999999998876544
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-21 Score=144.38 Aligned_cols=254 Identities=14% Similarity=0.152 Sum_probs=180.9
Q ss_pred CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE
Q 020454 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (326)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~ 127 (326)
+.+...+.+. .|++.+.++++|+.|.+|++...+.......-..++ ...|++.|..+++..... ..+.++
T Consensus 86 khhkgsiyc~--~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle---~nmhdgtirdl~fld~~~-----s~~~il 155 (350)
T KOG0641|consen 86 KHHKGSIYCT--AWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLE---FNMHDGTIRDLAFLDDPE-----SGGAIL 155 (350)
T ss_pred cccCccEEEE--EecCccCeEEecCCCceEEEEecccccccccCccee---eeecCCceeeeEEecCCC-----cCceEE
Confidence 3444454444 455667799999999999998775433222211111 136789999999876433 455666
Q ss_pred EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCC
Q 020454 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (326)
Q Consensus 128 ~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~ 207 (326)
+....|..+||-.+-.. ......+. .+.+.|..+ ++-++-++++|+.|.+|+.||++-...+..+.+...+.
T Consensus 156 ~s~gagdc~iy~tdc~~------g~~~~a~s-ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~ 227 (350)
T KOG0641|consen 156 ASAGAGDCKIYITDCGR------GQGFHALS-GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG 227 (350)
T ss_pred EecCCCcceEEEeecCC------CCcceeec-CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC
Confidence 66655655555432111 11222222 223445544 22257899999999999999999888777765533221
Q ss_pred CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (326)
Q Consensus 208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~ 287 (326)
.+ ....|.+++..| .|++|++|-.|....+||+|.+ ++++.+..|...|.++.|+|...|+++++.|..|++-|+
T Consensus 228 -gl-essavaav~vdp--sgrll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 228 -GL-ESSAVAAVAVDP--SGRLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred -Cc-ccceeEEEEECC--CcceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence 11 235688999988 5779999999999999999976 789999999999999999999999999999999999999
Q ss_pred CCC---e-EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 288 RTG---K-LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 288 ~~~---~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+.. + ++.....| ...+..+.|+|..--+++.|.|++|
T Consensus 303 qgdla~el~~~vv~eh-kdk~i~~rwh~~d~sfisssadkt~ 343 (350)
T KOG0641|consen 303 QGDLAHELPIMVVAEH-KDKAIQCRWHPQDFSFISSSADKTA 343 (350)
T ss_pred ccchhhcCceEEEEec-cCceEEEEecCccceeeeccCcceE
Confidence 742 1 22334456 8889999999998889999999976
No 105
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-22 Score=168.99 Aligned_cols=272 Identities=14% Similarity=0.093 Sum_probs=201.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
.+|+.+-.+|.|.+|++... -..+.+ -.+ .....+.+++|. ++..|++.+.+|.|.-||+.+.+.+..+..
T Consensus 38 ~~lAvsRt~g~IEiwN~~~~--w~~~~v-i~g--~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~- 108 (691)
T KOG2048|consen 38 NQLAVSRTDGNIEIWNLSNN--WFLEPV-IHG--PEDRSIESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYNIDS- 108 (691)
T ss_pred CceeeeccCCcEEEEccCCC--ceeeEE-Eec--CCCCceeeEEEc---cCCeEEeecCCceEEEEecccCceeEEecC-
Confidence 45888999999999999865 111111 122 344556677777 334599999999999999999888777663
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
..++|.+++..+ ....+..+++||.++.++...... ..-+.+ .+....|.+++|+|++
T Consensus 109 -------~gg~IWsiai~p--------~~~~l~IgcddGvl~~~s~~p~~I------~~~r~l-~rq~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 109 -------NGGAIWSIAINP--------ENTILAIGCDDGVLYDFSIGPDKI------TYKRSL-MRQKSRVLSLSWNPTG 166 (691)
T ss_pred -------CCcceeEEEeCC--------ccceEEeecCCceEEEEecCCceE------EEEeec-ccccceEEEEEecCCc
Confidence 347888888755 456788889999766666543321 011112 2335789999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
..++.|+.||.|++||..++..+..... ....+.-+.+.-|-++.|.. ++ .|++|..-|+|.+||...+ ..++++
T Consensus 167 ~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~-~~d~l~k~~~~iVWSv~~Lr--d~-tI~sgDS~G~V~FWd~~~g-TLiqS~ 241 (691)
T KOG2048|consen 167 TKIAGGSIDGVIRIWDVKSGQTLHIITM-QLDRLSKREPTIVWSVLFLR--DS-TIASGDSAGTVTFWDSIFG-TLIQSH 241 (691)
T ss_pred cEEEecccCceEEEEEcCCCceEEEeee-cccccccCCceEEEEEEEee--cC-cEEEecCCceEEEEcccCc-chhhhh
Confidence 9999999999999999998877662111 11111111223467888874 33 8999999999999999977 668899
Q ss_pred eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE---E-EEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---L-GCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~---~-~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..|+..|.+++..+++.++++++.|+.|..|...+.+. . .....| ...|++++..++ .|++||.|.+.
T Consensus 242 ~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h-~hdvrs~av~~~--~l~sgG~d~~l 313 (691)
T KOG2048|consen 242 SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH-AHDVRSMAVIEN--ALISGGRDFTL 313 (691)
T ss_pred hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC-cccceeeeeecc--eEEecceeeEE
Confidence 99999999999999999999999999999998877633 1 223345 889999999877 89999999763
No 106
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.9e-24 Score=183.91 Aligned_cols=239 Identities=12% Similarity=0.167 Sum_probs=178.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..|+|+..+|.|.+||+... +..++...|.++.+... .+.|. .....+|++|+.||+|++||++..+....+..
T Consensus 101 NlIAT~s~nG~i~vWdlnk~--~rnk~l~~f~EH~Rs~~--~ldfh-~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~- 174 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKS--IRNKLLTVFNEHERSAN--KLDFH-STEPNILISGSQDGTVKCWDLRSKKSKSTFRS- 174 (839)
T ss_pred hhheeecCCCcEEEEecCcc--ccchhhhHhhhhcccee--eeeec-cCCccEEEecCCCceEEEEeeecccccccccc-
Confidence 45899999999999999873 22355556666655544 34442 23344899999999999999987776666553
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
....|+.+.+.+. .++.++++.++|.+.+||++.... ..+.+ ..|.++|.|+.|||++
T Consensus 175 -------nSESiRDV~fsp~-------~~~~F~s~~dsG~lqlWDlRqp~r-------~~~k~-~AH~GpV~c~nwhPnr 232 (839)
T KOG0269|consen 175 -------NSESIRDVKFSPG-------YGNKFASIHDSGYLQLWDLRQPDR-------CEKKL-TAHNGPVLCLNWHPNR 232 (839)
T ss_pred -------cchhhhceeeccC-------CCceEEEecCCceEEEeeccCchh-------HHHHh-hcccCceEEEeecCCC
Confidence 3367887876552 567899999999999999986432 11111 2568899999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC--CCeEEEEeCCCCCCcee
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN--DHQVRLYDTSAQRRPVM 252 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~ 252 (326)
.+|||||.|+.|+|||+.+.+...... +....+|..++|-|.. ..+|++++. |..|+|||++...-|..
T Consensus 233 ~~lATGGRDK~vkiWd~t~~~~~~~~t--------InTiapv~rVkWRP~~-~~hLAtcsmv~dtsV~VWDvrRPYIP~~ 303 (839)
T KOG0269|consen 233 EWLATGGRDKMVKIWDMTDSRAKPKHT--------INTIAPVGRVKWRPAR-SYHLATCSMVVDTSVHVWDVRRPYIPYA 303 (839)
T ss_pred ceeeecCCCccEEEEeccCCCccceeE--------EeecceeeeeeeccCc-cchhhhhhccccceEEEEeeccccccce
Confidence 999999999999999998654322211 1112468899999964 458888864 77999999997767889
Q ss_pred EEeecCCceEEEEecC-CCCeEEEEcCCCcEEEEECCCC
Q 020454 253 SFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 253 ~~~~~~~~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~~ 290 (326)
++..|...++.++|.. |-..+.+++.||.|..-.++++
T Consensus 304 t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 304 TFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 9999999999999965 3456679999998877666543
No 107
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.7e-22 Score=175.22 Aligned_cols=258 Identities=12% Similarity=0.090 Sum_probs=188.8
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
--|++++.||.||+|+.... .+.++.+.. ....+.+++.. ..+|++|+.+++|.+|.+.+++.-..+..+
T Consensus 26 efi~tcgsdg~ir~~~~~sd-~e~P~ti~~-----~g~~v~~ia~~----s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf 95 (933)
T KOG1274|consen 26 EFICTCGSDGDIRKWKTNSD-EEEPETIDI-----SGELVSSIACY----SNHFLTGSEQNTVLRYKFPSGEEDTILARF 95 (933)
T ss_pred CEEEEecCCCceEEeecCCc-ccCCchhhc-----cCceeEEEeec----ccceEEeeccceEEEeeCCCCCccceeeee
Confidence 47899999999999997755 233322211 23333333332 227999999999999999877654344332
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
. -++..+++.. ++..+++|+.|-.|++.++.... ..+..+ .+..+|.++.++|++
T Consensus 96 t--------lp~r~~~v~g--------~g~~iaagsdD~~vK~~~~~D~s--------~~~~lr-gh~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 96 T--------LPIRDLAVSG--------SGKMIAAGSDDTAVKLLNLDDSS--------QEKVLR-GHDAPVLQLSYDPKG 150 (933)
T ss_pred e--------ccceEEEEec--------CCcEEEeecCceeEEEEeccccc--------hheeec-ccCCceeeeeEcCCC
Confidence 2 4677777644 56789999999999999876533 233333 457899999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
++||+.+-||.|++||+.++.....+.+.....- ......+..++|+|. .+ .|+....|+.|++|+.... .+...+
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~-~~~s~i~~~~aW~Pk-~g-~la~~~~d~~Vkvy~r~~w-e~~f~L 226 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE-FILSRICTRLAWHPK-GG-TLAVPPVDNTVKVYSRKGW-ELQFKL 226 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCcccc-ccccceeeeeeecCC-CC-eEEeeccCCeEEEEccCCc-eeheee
Confidence 9999999999999999999988777766544321 111345778899994 34 7778888999999999876 444444
Q ss_pred e--ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEE
Q 020454 255 D--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII 316 (326)
Q Consensus 255 ~--~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 316 (326)
. .+...+..++|+|+|.|||+++.+|.|.|||..+-+. ... ...|.+++|.|+.+.|
T Consensus 227 r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~-~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 227 RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEF-KRAVCCEAWKPNANAI 285 (933)
T ss_pred cccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccc-cceeEEEecCCCCCee
Confidence 3 3444589999999999999999999999999998222 222 6689999999987644
No 108
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2.3e-23 Score=176.20 Aligned_cols=279 Identities=14% Similarity=0.119 Sum_probs=203.5
Q ss_pred CCCeeeeeecCcccEEEEEecCCcC-----------CCcceeeecc-------------CC------CCCceEEEEEeee
Q 020454 12 CPPLRALTFDSLGLIKVIEARGEHG-----------GVPKVVERWG-------------DP------HSSNCVLAASIDD 61 (326)
Q Consensus 12 ~~~~~l~~~~~~G~i~vw~~~~~~~-----------~~~~~~~~~~-------------~~------~~~~~~~~~~~~~ 61 (326)
-|+-.++||++||+||+|++..... +..++...-+ ++ .....+-+ ..-
T Consensus 390 lp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~--~~v 467 (1080)
T KOG1408|consen 390 LPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRA--LAV 467 (1080)
T ss_pred CCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEE--EEE
Confidence 3556799999999999999887310 1111110000 00 11112222 234
Q ss_pred CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcc
Q 020454 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (326)
Q Consensus 62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~ 141 (326)
++++++|++|..-|+++||++.+-++...+. .|+..|.+|.+..+.. ....|++++.|..|++||+.
T Consensus 468 Sp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e--------AHesEilcLeyS~p~~-----~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 468 SPDGQHLASGDRGGNLRVYDLQELEYTCFME--------AHESEILCLEYSFPVL-----TNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred CCCcceecccCccCceEEEEehhhhhhhhee--------cccceeEEEeecCchh-----hhHhhhhccCCceEEEEecc
Confidence 5677899999999999999998766655544 6778999999765432 34678999999999999987
Q ss_pred ccccccccccceEEEEEccCCCceEEEEEcCCC--CEEEEecCCCeEEEEECCC----ceeeeeecCCCCCCCCcCCCCc
Q 020454 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDK----CEKIWTAKPPPKNSLGIFTPTW 215 (326)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~sg~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~ 215 (326)
.+-...+. .+ .|...|+++.|..+| ..++++|.|..| +|+... +..... ..+. .....
T Consensus 535 rny~l~qt-------ld-~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r-~t~t------~~ktT 598 (1080)
T KOG1408|consen 535 RNYDLVQT-------LD-GHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPR-HTQT------LSKTT 598 (1080)
T ss_pred cccchhhh-------hc-ccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccc-cccc------cccce
Confidence 54322111 11 246789999998877 678899999776 444432 221111 1110 01235
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee---cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~ 292 (326)
++.++..|+ .+++++++.|..|+|||+.++ +.++.|++ |++..-.+...|.|.||++.+.|.++.++|+.+|++
T Consensus 599 lYDm~Vdp~--~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc 675 (1080)
T KOG1408|consen 599 LYDMAVDPT--SKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC 675 (1080)
T ss_pred EEEeeeCCC--cceEEEEecccceEEEecccc-ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh
Confidence 778888884 459999999999999999988 44777774 556778889999999999999999999999999999
Q ss_pred EEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 293 LGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 293 ~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+.++.|| ...|+.+.|.+|.+.|++.+.||.+
T Consensus 676 vA~m~GH-sE~VTG~kF~nDCkHlISvsgDgCI 707 (1080)
T KOG1408|consen 676 VAQMTGH-SEAVTGVKFLNDCKHLISVSGDGCI 707 (1080)
T ss_pred hhhhcCc-chheeeeeecccchhheeecCCceE
Confidence 9999998 9999999999999999999999964
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.1e-23 Score=171.31 Aligned_cols=240 Identities=14% Similarity=0.065 Sum_probs=181.6
Q ss_pred CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc---eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCce
Q 020454 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (326)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 125 (326)
.+.+.+.++.+.. ..+++++|+. |.|+|||+.... .+..+.+. ..++.|+....++ ++..
T Consensus 417 ~HGEvVcAvtIS~--~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl------~rdnyiRSckL~p--------dgrt 479 (705)
T KOG0639|consen 417 AHGEVVCAVTISN--PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCL------NRDNYIRSCKLLP--------DGRT 479 (705)
T ss_pred ccCcEEEEEEecC--CcceeEecCC-CeEEEeeccCCCCCCcccccccc------CcccceeeeEecC--------CCce
Confidence 4455555555543 3346777776 889999996432 22223322 2346677666666 7789
Q ss_pred EEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCC
Q 020454 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK 205 (326)
Q Consensus 126 l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~ 205 (326)
|++|++-.++.|||+..... .|+.--......++.++++||.++.+++..||.|.|||+.+...+..+++|..
T Consensus 480 LivGGeastlsiWDLAapTp-------rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 480 LIVGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred EEeccccceeeeeeccCCCc-------chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 99999999999999875432 22221112234578899999999999999999999999999999999999874
Q ss_pred CCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc-----------------------------------
Q 020454 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP----------------------------------- 250 (326)
Q Consensus 206 ~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~----------------------------------- 250 (326)
.+.++..++ +|..|-+|+-|.+||-||+|.++++
T Consensus 553 ---------GascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 553 ---------GASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred ---------CceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEec
Confidence 466777775 7889999999999999999876431
Q ss_pred ----eeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 251 ----VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 251 ----~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.+.+..|++-|.++.|.+.|+++++.+.|+.+..|...-|..+.+.+. ..+|.+.+.+-++++|+|||.|+.|
T Consensus 622 skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE--~SsVlsCDIS~ddkyIVTGSGdkkA 698 (705)
T KOG0639|consen 622 SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE--SSSVLSCDISFDDKYIVTGSGDKKA 698 (705)
T ss_pred CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc--cCcceeeeeccCceEEEecCCCcce
Confidence 112224667888999999999999989999999998888887776663 7899999999999999999999766
No 110
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.4e-24 Score=189.05 Aligned_cols=233 Identities=14% Similarity=0.202 Sum_probs=185.0
Q ss_pred CeEEEEecCCcEEEEeccc---cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454 66 PLLAVARKNGLTDILNPLN---GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (326)
Q Consensus 66 ~~l~~g~~dg~i~i~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~ 142 (326)
.+|+.|..||.|.+||... +.-...+.. .+.|.+.|.++.+-.. .++.+++|..+|.|.|||++.
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~-----~~~h~G~V~gLDfN~~-------q~nlLASGa~~geI~iWDlnn 148 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLAT-----KSKHTGPVLGLDFNPF-------QGNLLASGADDGEILIWDLNK 148 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhh-----hcccCCceeeeecccc-------CCceeeccCCCCcEEEeccCC
Confidence 4799999999999999864 221112221 2478899999986553 346899999999999999987
Q ss_pred cccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454 143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (326)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (326)
.+..... + .......|.+++|+..- +.|++++.++.+.|||++..+++..+..+... ..++.++|
T Consensus 149 ~~tP~~~--~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~-------~~~S~l~W 214 (1049)
T KOG0307|consen 149 PETPFTP--G-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR-------MHCSVLAW 214 (1049)
T ss_pred cCCCCCC--C-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc-------cceeeeee
Confidence 5432111 1 12335789999998754 78899999999999999998887776665433 23779999
Q ss_pred eecCCCcEEEEEeCCC---eEEEEeCCCCCCceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 222 LSIDDHRKFVAGTNDH---QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 222 ~p~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
+|+.. ..+++++.|. .|.+||+|....|++.++.|...|.++.|++.+ +++++++.|+.|.+|+.++++.+..+.
T Consensus 215 hP~~a-Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 215 HPDHA-TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred CCCCc-eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 99744 4666666544 799999997778899999999999999999976 788899999999999999999999999
Q ss_pred ceecceEEEEEECCCCC-EEEEeccCccCC
Q 020454 298 GKCSGSIRSIARHPTLP-IIASCGFLEAAS 326 (326)
Q Consensus 298 ~~~~~~v~~l~~~p~~~-~l~s~s~D~~~~ 326 (326)
.. ...+..+.|+|..+ .++.++.||.++
T Consensus 294 ~~-~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 294 AQ-GNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred CC-CcceeeeeecCCCcchhhhheecccee
Confidence 86 88999999999877 888889999764
No 111
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.5e-22 Score=171.32 Aligned_cols=294 Identities=13% Similarity=0.132 Sum_probs=192.3
Q ss_pred eeeeeecCcccEEEEEecCCc-CCCcc--------------eeeeccC--CCCCceEEEEEeeeCCCCCeEEEEecCCcE
Q 020454 15 LRALTFDSLGLIKVIEARGEH-GGVPK--------------VVERWGD--PHSSNCVLAASIDDSQNDPLLAVARKNGLT 77 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~-~~~~~--------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i 77 (326)
--+++|-.+|.||+|+.++-+ .++.. ....+.. +..---.+++-|+... ..|.+-..|..+
T Consensus 271 r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~--~klscVYndhSl 348 (1080)
T KOG1408|consen 271 RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETT--DKLSCVYNDHSL 348 (1080)
T ss_pred ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCC--ceEEEEEcCceE
Confidence 457888999999999965431 00000 0000111 1111223455555443 379999999999
Q ss_pred EEEeccccceeeeecccCCCCCCCCCCCeeeeeccccc---ccccCCCCceEEEEecCCcEEEEEcccccccc-------
Q 020454 78 DILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQ---REESSSRSRTLLTCTTKGKASMRSIEVTKVSA------- 147 (326)
Q Consensus 78 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~------- 147 (326)
.|||+..-+.+.....+. -|...|.++..++-+ .+...-..+.+++|++|++|++|+++......
T Consensus 349 YvWDvrD~~kvgk~~s~l-----yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil 423 (1080)
T KOG1408|consen 349 YVWDVRDVNKVGKCSSML-----YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL 423 (1080)
T ss_pred EEEeccccccccceeeee-----eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence 999997533222211110 222344444333210 01111134679999999999999987621100
Q ss_pred -------ccccceEE--------EEE------ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCC
Q 020454 148 -------ESSCSTVK--------SWN------VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (326)
Q Consensus 148 -------~~~~~~~~--------~~~------~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~ 206 (326)
...++... +++ ......+.+++++|++++||+|..-|+|++||+...+....+..|..+
T Consensus 424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE 503 (1080)
T KOG1408|consen 424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESE 503 (1080)
T ss_pred hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccce
Confidence 00111111 111 011224999999999999999999999999999988877777776644
Q ss_pred CCCcCCCCceeeeEEee-cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC--------------------------
Q 020454 207 SLGIFTPTWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET-------------------------- 259 (326)
Q Consensus 207 ~~~~~~~~~v~~~~~~p-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-------------------------- 259 (326)
|.++.|+- .-..++||+++.|.-|++||......+++++..|..
T Consensus 504 ---------ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim 574 (1080)
T KOG1408|consen 504 ---------ILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM 574 (1080)
T ss_pred ---------eEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh
Confidence 55667653 223468999999999999998644344444444433
Q ss_pred -----------------------ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc---eecceEEEEEECCCC
Q 020454 260 -----------------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARHPTL 313 (326)
Q Consensus 260 -----------------------~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~---~~~~~v~~l~~~p~~ 313 (326)
.++.++..|..+++++++.|..|+|||+.+++..+.|++ | ++....+...|.+
T Consensus 575 Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~-eG~lIKv~lDPSg 653 (1080)
T KOG1408|consen 575 FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH-EGDLIKVILDPSG 653 (1080)
T ss_pred eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC-CCceEEEEECCCc
Confidence 455566668888999999999999999999999999985 4 6788899999999
Q ss_pred CEEEEeccCccC
Q 020454 314 PIIASCGFLEAA 325 (326)
Q Consensus 314 ~~l~s~s~D~~~ 325 (326)
.|||+...|++.
T Consensus 654 iY~atScsdktl 665 (1080)
T KOG1408|consen 654 IYLATSCSDKTL 665 (1080)
T ss_pred cEEEEeecCCce
Confidence 999999999864
No 112
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=6.8e-23 Score=166.54 Aligned_cols=250 Identities=14% Similarity=0.211 Sum_probs=181.2
Q ss_pred cCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCC
Q 020454 21 DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ 100 (326)
Q Consensus 21 ~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 100 (326)
+.|..+++|.-.+. .+...+....+ .+...|+-+. ...-|+++|+..+.|+|||+.. +++..+..
T Consensus 54 ~gdk~~~~~~K~g~-~~~Vp~~~k~~-gd~~~Cv~~~-----s~S~y~~sgG~~~~Vkiwdl~~-kl~hr~lk------- 118 (673)
T KOG4378|consen 54 AGDKVMRIKEKDGK-TPEVPRVRKLT-GDNAFCVACA-----SQSLYEISGGQSGCVKIWDLRA-KLIHRFLK------- 118 (673)
T ss_pred CCceeEEEecccCC-CCccceeeccc-cchHHHHhhh-----hcceeeeccCcCceeeehhhHH-HHHhhhcc-------
Confidence 45557888876654 22222221111 1122222222 2234799999999999999973 33333322
Q ss_pred CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEE
Q 020454 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLF 179 (326)
Q Consensus 101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s 179 (326)
.|...|.++.+-. .+.+|++++..|.|.+..+......+ .+....++.|.-+.+++.. .+|.+
T Consensus 119 dh~stvt~v~YN~--------~DeyiAsvs~gGdiiih~~~t~~~tt--------~f~~~sgqsvRll~ys~skr~lL~~ 182 (673)
T KOG4378|consen 119 DHQSTVTYVDYNN--------TDEYIASVSDGGDIIIHGTKTKQKTT--------TFTIDSGQSVRLLRYSPSKRFLLSI 182 (673)
T ss_pred CCcceeEEEEecC--------CcceeEEeccCCcEEEEecccCcccc--------ceecCCCCeEEEeecccccceeeEe
Confidence 6668899888655 67899999999999999977654322 2333335667789999976 56678
Q ss_pred ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC
Q 020454 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET 259 (326)
Q Consensus 180 g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 259 (326)
++.+|.|.+||+....+.+..... |..+...++|+|.+ ..+|++.+.|+.|.+||.+.. +....+. -+.
T Consensus 183 asd~G~VtlwDv~g~sp~~~~~~~--------HsAP~~gicfspsn-e~l~vsVG~Dkki~~yD~~s~-~s~~~l~-y~~ 251 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGMSPIFHASEA--------HSAPCRGICFSPSN-EALLVSVGYDKKINIYDIRSQ-ASTDRLT-YSH 251 (673)
T ss_pred eccCCeEEEEeccCCCcccchhhh--------ccCCcCcceecCCc-cceEEEecccceEEEeecccc-cccceee-ecC
Confidence 899999999999988887764332 22446688999974 458999999999999999965 4455553 347
Q ss_pred ceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEcceecceEEEEEECCCC
Q 020454 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL 313 (326)
Q Consensus 260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p~~ 313 (326)
+.+.++|+++|.+|++|+..|.|..||++.. .++..+..| ...|++|+|-|..
T Consensus 252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah-~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 252 PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH-DASVTRVAFQPSP 305 (673)
T ss_pred CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec-ccceeEEEeeecc
Confidence 8999999999999999999999999999964 567778888 8899999998764
No 113
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=156.88 Aligned_cols=231 Identities=16% Similarity=0.248 Sum_probs=168.6
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc-
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT- 143 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~- 143 (326)
.+++.+++.|.+-+||.++++.++..+. +|.+.|.++.+.+ ....+++++.|++..||...-+
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y~--------GH~GSVNsikfh~--------s~~L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATYT--------GHTGSVNSIKFHN--------SGLLLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred CcceeecccccceeEEeeccccceeeec--------ccccceeeEEecc--------ccceEEEccCCcchHHHHHhhcC
Confidence 3478999999999999999999988877 7779999988765 5568999999999999973211
Q ss_pred -----cc---------------------------------------------------------ccccccceEEEEEccC
Q 020454 144 -----KV---------------------------------------------------------SAESSCSTVKSWNVCA 161 (326)
Q Consensus 144 -----~~---------------------------------------------------------~~~~~~~~~~~~~~~~ 161 (326)
.. +++++|.+..+|++..
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt 303 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET 303 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc
Confidence 00 2334444555555543
Q ss_pred CCc----------eEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE
Q 020454 162 SGT----------IAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (326)
Q Consensus 162 ~~~----------v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l 230 (326)
+.. ++.+.-||..+++++++.|.+.++||++..- .+..+++|. ..|+++.|... ..+
T Consensus 304 ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt---------dtVTS~vF~~d---d~v 371 (481)
T KOG0300|consen 304 GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT---------DTVTSVVFNTD---DRV 371 (481)
T ss_pred CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc---------cceeEEEEecC---Cce
Confidence 332 3334445555566666666666666665322 133334433 56889999863 279
Q ss_pred EEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEE----EEcceecceEEE
Q 020454 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG----CFIGKCSGSIRS 306 (326)
Q Consensus 231 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~----~~~~~~~~~v~~ 306 (326)
++|+.|.+|++||+++++.|+.++... ++++.++.+..+..|+.-..+..|++||+...++.. .-++| ..-|.+
T Consensus 372 VSgSDDrTvKvWdLrNMRsplATIRtd-S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH-rRMV~c 449 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLATIRTD-SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH-RRMVTC 449 (481)
T ss_pred eecCCCceEEEeeeccccCcceeeecC-CccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccc-ceeeee
Confidence 999999999999999998899888665 789999999888889998899999999998554321 33477 889999
Q ss_pred EEECCCC--CEEEEeccCccC
Q 020454 307 IARHPTL--PIIASCGFLEAA 325 (326)
Q Consensus 307 l~~~p~~--~~l~s~s~D~~~ 325 (326)
.+|..+. .-|++||.|+++
T Consensus 450 ~AW~eehp~cnLftcGFDR~v 470 (481)
T KOG0300|consen 450 CAWLEEHPACNLFTCGFDRMV 470 (481)
T ss_pred eeccccCccccccccccccee
Confidence 9998443 358999999975
No 114
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-21 Score=167.56 Aligned_cols=280 Identities=11% Similarity=0.082 Sum_probs=186.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++++.++.+.||+.... .+...+...+..... ..+.++..... --+.++.|+..|.+++|++.+++.+.+++.+
T Consensus 125 e~lia~d~~~~l~vw~~s~~-~~e~~l~~~~~~~~~-~~Ital~HP~T-YLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~ 201 (910)
T KOG1539|consen 125 EHLIAVDISNILFVWKTSSI-QEELYLQSTFLKVEG-DFITALLHPST-YLNKIVVGSSQGRLQLWNVRTGKVVYTFQEF 201 (910)
T ss_pred ceEEEEEccCcEEEEEeccc-cccccccceeeeccC-CceeeEecchh-heeeEEEeecCCcEEEEEeccCcEEEEeccc
Confidence 45888999999999999874 111111112222222 22444443322 2235899999999999999999999998853
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
...|+++...+ .-+.++.|..+|+|.++++...+ .+..++.. .+.|+.++|..||
T Consensus 202 --------~s~IT~ieqsP--------aLDVVaiG~~~G~ViifNlK~dk--------il~sFk~d-~g~VtslSFrtDG 256 (910)
T KOG1539|consen 202 --------FSRITAIEQSP--------ALDVVAIGLENGTVIIFNLKFDK--------ILMSFKQD-WGRVTSLSFRTDG 256 (910)
T ss_pred --------ccceeEeccCC--------cceEEEEeccCceEEEEEcccCc--------EEEEEEcc-ccceeEEEeccCC
Confidence 36788777554 55689999999999999987654 33333322 2445555555444
Q ss_pred -CEEEEecCCCeEEEEECCCceeee-------------------------------------------------------
Q 020454 175 -KFSLFGGKGVEVNVWDLDKCEKIW------------------------------------------------------- 198 (326)
Q Consensus 175 -~~l~sg~~d~~i~iwd~~~~~~~~------------------------------------------------------- 198 (326)
..+++|+..|.+.+||++..+...
T Consensus 257 ~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P 336 (910)
T KOG1539|consen 257 NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP 336 (910)
T ss_pred CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC
Confidence 233444444555555554320000
Q ss_pred --------------------------------------------------------------------------------
Q 020454 199 -------------------------------------------------------------------------------- 198 (326)
Q Consensus 199 -------------------------------------------------------------------------------- 198 (326)
T Consensus 337 p~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~ 416 (910)
T KOG1539|consen 337 PSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVIT 416 (910)
T ss_pred chheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeE
Confidence
Q ss_pred -----------eecCCCCCCCCcCC------CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE---eecC
Q 020454 199 -----------TAKPPPKNSLGIFT------PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF---DFRE 258 (326)
Q Consensus 199 -----------~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~ 258 (326)
..++......-+.. ...+++++.++ .|+..+.|+..|.|-+|++.++ ....++ ..|.
T Consensus 417 ~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~--CGNF~~IG~S~G~Id~fNmQSG-i~r~sf~~~~ah~ 493 (910)
T KOG1539|consen 417 AHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF--CGNFVFIGYSKGTIDRFNMQSG-IHRKSFGDSPAHK 493 (910)
T ss_pred EecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec--cCceEEEeccCCeEEEEEcccC-eeecccccCcccc
Confidence 00000000000111 13455666665 5678889999999999999987 445666 4789
Q ss_pred CceEEEEecCCCCeEEEEcCCCcEEEEECCCC-----------------------------------------eEEEEEc
Q 020454 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-----------------------------------------KLLGCFI 297 (326)
Q Consensus 259 ~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-----------------------------------------~~~~~~~ 297 (326)
.+|+.++...-++.+++++.+|.+.+||+... +.++.|.
T Consensus 494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~ 573 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW 573 (910)
T ss_pred CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence 99999999888899999999999999998762 2345577
Q ss_pred ceecceEEEEEECCCCCEEEEeccCccCC
Q 020454 298 GKCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 298 ~~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
|| .+.|++++|+|||++|++++.|++++
T Consensus 574 gh-~nritd~~FS~DgrWlisasmD~tIr 601 (910)
T KOG1539|consen 574 GH-GNRITDMTFSPDGRWLISASMDSTIR 601 (910)
T ss_pred cc-ccceeeeEeCCCCcEEEEeecCCcEE
Confidence 87 99999999999999999999999763
No 115
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=2.3e-22 Score=161.55 Aligned_cols=241 Identities=12% Similarity=0.037 Sum_probs=168.1
Q ss_pred eeeeeecCcccEEEEEecCCcCCCccee------eeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce-
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVV------ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL- 87 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~- 87 (326)
.-+++.+..|.+.|||..+. ....+.. .+...+.. .-..++|..... ..|++|+.|++|.+||+.....
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~-~s~~~~~~~~~Pdl~L~gH~~--eg~glsWn~~~~-g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKH-PSKPKASGECRPDLRLKGHEK--EGYGLSWNRQQE-GTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred cEEEecCCCCCEEEEEeccC-CCcccccccCCCceEEEeecc--cccccccccccc-eeEeeccCCCcEEEEeccccccC
Confidence 34667899999999998765 2222111 01111111 112344433333 3699999999999999964332
Q ss_pred ---eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCc
Q 020454 88 ---RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT 164 (326)
Q Consensus 88 ---~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (326)
+.....+ ..|+..|...++... +...+.+++.|+.+.|||.+.. .. ....-...+..+
T Consensus 214 ~~~~~p~~~~-----~~h~~~VeDV~~h~~-------h~~lF~sv~dd~~L~iwD~R~~-~~------~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 214 DKVVDPKTIF-----SGHEDVVEDVAWHPL-------HEDLFGSVGDDGKLMIWDTRSN-TS------KPSHSVKAHSAE 274 (422)
T ss_pred CccccceEEe-----ecCCcceehhhcccc-------chhhheeecCCCeEEEEEcCCC-CC------CCcccccccCCc
Confidence 1221211 256677777665442 4578999999999999998852 11 111111245789
Q ss_pred eEEEEEcCC-CCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454 165 IAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (326)
Q Consensus 165 v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw 242 (326)
|.|++|+|- +.+||+|+.|++|++||+|+.+ ++..+..|. ..|..|.|+|..+. .|++++.|+.+.+|
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~---------dev~~V~WSPh~et-vLASSg~D~rl~vW 344 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE---------DEVFQVEWSPHNET-VLASSGTDRRLNVW 344 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC---------cceEEEEeCCCCCc-eeEecccCCcEEEE
Confidence 999999995 4888999999999999999854 466666655 45889999998654 99999999999999
Q ss_pred eCCCCCC-------------ceeEEeecCCceEEEEecCCCCe-EEEEcCCCcEEEEECC
Q 020454 243 DTSAQRR-------------PVMSFDFRETPIKAVAEEPDSFN-IYIGNGSGDLASVDIR 288 (326)
Q Consensus 243 d~~~~~~-------------~~~~~~~~~~~i~~v~~s~~~~~-l~~g~~dg~v~iwd~~ 288 (326)
|+..-.. ++....+|...|..+.|+|+... |++.+.|+.+.||.+.
T Consensus 345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9863211 23455578899999999998654 5588999999999986
No 116
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=3.9e-22 Score=150.09 Aligned_cols=196 Identities=16% Similarity=0.219 Sum_probs=161.6
Q ss_pred CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEE
Q 020454 100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179 (326)
Q Consensus 100 ~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 179 (326)
++|+.+++-+.+.. +++.|++|+.|....+|--... ..+-.++ .|.+.|+|++++.+.+.+++
T Consensus 7 ~GHERplTqiKyN~--------eGDLlFscaKD~~~~vw~s~nG--------erlGty~-GHtGavW~~Did~~s~~liT 69 (327)
T KOG0643|consen 7 QGHERPLTQIKYNR--------EGDLLFSCAKDSTPTVWYSLNG--------ERLGTYD-GHTGAVWCCDIDWDSKHLIT 69 (327)
T ss_pred ccCccccceEEecC--------CCcEEEEecCCCCceEEEecCC--------ceeeeec-CCCceEEEEEecCCcceeee
Confidence 47788898776533 5689999999999999974222 2444555 35789999999999999999
Q ss_pred ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-----CCCeEEEEeCCC------CC
Q 020454 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-----NDHQVRLYDTSA------QR 248 (326)
Q Consensus 180 g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-----~dg~v~iwd~~~------~~ 248 (326)
|+.|.++++||+++++.+...+. +..|..+.|++ ++++++.++ ..+.|.++|++. .+
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~----------~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKT----------NSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeec----------CCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 99999999999999999988654 35688999998 455666554 346799999983 23
Q ss_pred CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE-EEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL-GCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 249 ~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.|...+..+++.++.+-|.|-+.+|++|..||.|.+||+++|+.+ ..-+.| ...|+.|.++|+..+++|+|.|.+|
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h-~~~Ind~q~s~d~T~FiT~s~Dtta 214 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH-SSKINDLQFSRDRTYFITGSKDTTA 214 (327)
T ss_pred CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh-ccccccccccCCcceEEecccCccc
Confidence 578888889999999999999999999999999999999998554 455677 8899999999999999999999876
No 117
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.5e-22 Score=153.24 Aligned_cols=203 Identities=9% Similarity=0.099 Sum_probs=155.3
Q ss_pred eCCCCCeEEEEecCCcEEEEeccccc------eeeeecc-cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC
Q 020454 61 DSQNDPLLAVARKNGLTDILNPLNGD------LRVAISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (326)
Q Consensus 61 ~~~~~~~l~~g~~dg~i~i~~~~~~~------~~~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g 133 (326)
+..+++|+++|+.||.|.+||+++.. ++....+ +..+....|.-.|..+.|++. +.+.+.+++.|.
T Consensus 52 d~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-------DtGmFtssSFDh 124 (397)
T KOG4283|consen 52 DLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-------DTGMFTSSSFDH 124 (397)
T ss_pred ccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-------cCceeecccccc
Confidence 34577899999999999999997543 1111111 111111355667888888884 457899999999
Q ss_pred cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC---CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCc
Q 020454 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS---EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (326)
Q Consensus 134 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 210 (326)
++++||.+..+ ....++. ++.|++-+++|- ..++|+|..|-.|++-|+.++.....+++|.
T Consensus 125 tlKVWDtnTlQ--------~a~~F~m--e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr------ 188 (397)
T KOG4283|consen 125 TLKVWDTNTLQ--------EAVDFKM--EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR------ 188 (397)
T ss_pred eEEEeecccce--------eeEEeec--CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc------
Confidence 99999987654 3344444 567888888883 4688999999999999999999999999987
Q ss_pred CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE--------------eecCCceEEEEecCCCCeEEEE
Q 020454 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF--------------DFRETPIKAVAEEPDSFNIYIG 276 (326)
Q Consensus 211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--------------~~~~~~i~~v~~s~~~~~l~~g 276 (326)
..|.++.|+|.. .-.|++|+.||.|++||+|....+...+ ..|.+.+..++|..++.++++.
T Consensus 189 ---~~vlaV~Wsp~~-e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 189 ---DGVLAVEWSPSS-EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred ---CceEEEEeccCc-eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence 447799999974 4488999999999999998542223222 2466789999999999999999
Q ss_pred cCCCcEEEEECCCC
Q 020454 277 NGSGDLASVDIRTG 290 (326)
Q Consensus 277 ~~dg~v~iwd~~~~ 290 (326)
+.|..+++|+..+|
T Consensus 265 gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 265 GTDDRIRVWNMESG 278 (397)
T ss_pred cCccceEEeecccC
Confidence 99999999998764
No 118
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.3e-21 Score=147.88 Aligned_cols=257 Identities=10% Similarity=0.093 Sum_probs=173.8
Q ss_pred CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc--eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (326)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~ 128 (326)
...+..++|+. .++.+|+++.|++|+|||.+... .-.+-. ...|++.|..+.+.++. .+..+++
T Consensus 13 ~DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~------Wrah~~Si~rV~WAhPE------fGqvvA~ 78 (361)
T KOG2445|consen 13 KDLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWSCTSS------WRAHDGSIWRVVWAHPE------FGQVVAT 78 (361)
T ss_pred cceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceEEeee------EEecCCcEEEEEecCcc------ccceEEE
Confidence 34455555554 35589999999999999964332 211111 12677889988876643 5778999
Q ss_pred EecCCcEEEEEccccccc-cccccceEEEEEccCCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCceeee--e----
Q 020454 129 CTTKGKASMRSIEVTKVS-AESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEKIW--T---- 199 (326)
Q Consensus 129 ~~~~g~v~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~~~--~---- 199 (326)
|+.|+++.||.-...... .+......... ......|+.+.|.|. |-.||+++.||.+|||+....-.+. .
T Consensus 79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl-~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTL-VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred EecCCceeeeeecccccccccceeEEEEEe-ecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence 999999999984322111 11111111111 133568999999996 5789999999999999976532211 1
Q ss_pred ecCCCCCCCCcCCCCceeeeEEeecCC-CcEEEEEeCC-----CeEEEEeCCCCC---CceeEEeecCCceEEEEecCC-
Q 020454 200 AKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTND-----HQVRLYDTSAQR---RPVMSFDFRETPIKAVAEEPD- 269 (326)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~~l~~~~~d-----g~v~iwd~~~~~---~~~~~~~~~~~~i~~v~~s~~- 269 (326)
+++..... -.......++.|+|..- ..+||+|+.+ +.++||...... ..+.++..+..+|++++|.|+
T Consensus 158 i~~~~~pp--~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 158 IQNVIDPP--GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred hhhccCCc--ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 11111100 00113456888887532 2377777765 488999865432 234566789999999999997
Q ss_pred C---CeEEEEcCCCcEEEEECCCC--------------------eEEEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454 270 S---FNIYIGNGSGDLASVDIRTG--------------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 270 ~---~~l~~g~~dg~v~iwd~~~~--------------------~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
| ..||+++.|| |+||.++.. +.+..+.+| .+.|+.+.|+-.|.+|++.|.||+++
T Consensus 236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH-NGEVWRVRWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC-CCceEEEEEeeeeeEEeecCCCceee
Confidence 3 4788999999 999998731 345567788 99999999999999999999999874
No 119
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=5.9e-24 Score=179.71 Aligned_cols=221 Identities=16% Similarity=0.200 Sum_probs=182.4
Q ss_pred CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (326)
Q Consensus 63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~ 142 (326)
...+.+++|+.|-.+-+|.+..-..+..+. .|+.+|.++.+.. ....|.+++.+|.|++||++.
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~--------~hespIeSl~f~~--------~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAITSLT--------GHESPIESLTFDT--------SERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred ccceeeccCCCceeeccccccCCchhheee--------ccCCcceeeecCc--------chhhhcccccCCceeeeehhh
Confidence 344568999999999999885444333322 6778999988655 456889999999999999985
Q ss_pred cccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454 143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (326)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (326)
... ++.+ ..+..++.++.|+|-+.|+|+|+.|..+++||++...+.+..++|. .-|..+.|.
T Consensus 102 Ak~--------vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~---------~vv~~l~ls 163 (825)
T KOG0267|consen 102 AKI--------VRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT---------RVVDVLRLS 163 (825)
T ss_pred hhh--------hhhh-hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc---------ceeEEEeec
Confidence 331 1111 1345678899999999999999999999999999888888777654 447788999
Q ss_pred ecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecc
Q 020454 223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG 302 (326)
Q Consensus 223 p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~ 302 (326)
| +|++++.++.|.+++|||...+ +....|..|+..+..+.|+|..-.++.|+.|+++++||+++-+.+...... ..
T Consensus 164 P--~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~-~~ 239 (825)
T KOG0267|consen 164 P--DGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE-TD 239 (825)
T ss_pred C--CCceeeccCCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc-cC
Confidence 8 6789999999999999999977 678899999999999999999989999999999999999998888888776 88
Q ss_pred eEEEEEECCCCCEEEEecc
Q 020454 303 SIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 303 ~v~~l~~~p~~~~l~s~s~ 321 (326)
.|.+++|+|++..+++|-.
T Consensus 240 ~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 240 GVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred CceeeeecCCceeeecCch
Confidence 9999999999998887754
No 120
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=2.4e-22 Score=158.06 Aligned_cols=195 Identities=15% Similarity=0.179 Sum_probs=148.6
Q ss_pred CCceEEEEecCCcEEEEEccccccc--------cccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECC
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVS--------AESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLD 192 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~ 192 (326)
.....+++++.|.|+||++.....+ ..+....+..++ .++..=+.++|+|-. ..|++|..-+.|++|...
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~ 242 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS 242 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeecccccccccccCccccceEeeeec
Confidence 4567888999999999998753321 112233444444 245677899999943 447788888999999988
Q ss_pred CceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC-CCceeEEeecCCceEEEEecCCCC
Q 020454 193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-RRPVMSFDFRETPIKAVAEEPDSF 271 (326)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~i~~v~~s~~~~ 271 (326)
++.-....... ..|...|-.++|+|..++ .|++|+.||+|+|||+|.+ +++....+.|.+.|+.|.|+.+-.
T Consensus 243 ~g~W~vd~~Pf------~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~ 315 (440)
T KOG0302|consen 243 TGSWKVDQRPF------TGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP 315 (440)
T ss_pred cCceeecCccc------cccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc
Confidence 75432221111 114466888999998665 9999999999999999976 334455688999999999999888
Q ss_pred eEEEEcCCCcEEEEECCC---CeEEEEEcceecceEEEEEECCC-CCEEEEeccCccC
Q 020454 272 NIYIGNGSGDLASVDIRT---GKLLGCFIGKCSGSIRSIARHPT-LPIIASCGFLEAA 325 (326)
Q Consensus 272 ~l~~g~~dg~v~iwd~~~---~~~~~~~~~~~~~~v~~l~~~p~-~~~l~s~s~D~~~ 325 (326)
+|++|+.||+++|||+++ ++++..|+-| ..+|++|.|+|. ...|+++|.|..+
T Consensus 316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H-k~pItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYH-KAPITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred eeeecCCCceEEEEEhhhccCCCcceeEEec-cCCeeEEEeccccCceEEeccCCCcE
Confidence 999999999999999985 6778899988 999999999984 4678888888764
No 121
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=9e-22 Score=154.84 Aligned_cols=234 Identities=14% Similarity=0.175 Sum_probs=158.7
Q ss_pred CCCeEEEEecCCcEEEEecccc-------ceeeeecccCC-CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcE
Q 020454 64 NDPLLAVARKNGLTDILNPLNG-------DLRVAISNAGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA 135 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~-------~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v 135 (326)
+..+.++=+..|.|+||++..- +.........+ -....|.+.=.+|.+.+ ...+.+++|.-.+.|
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp-------~~~g~LlsGDc~~~I 236 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP-------IKTGRLLSGDCVKGI 236 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccc-------ccccccccCccccce
Confidence 4556777788899999998521 00000000000 00012333334455533 134568888888888
Q ss_pred EEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCce---eeeeecCCCCCCCCcC
Q 020454 136 SMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCE---KIWTAKPPPKNSLGIF 211 (326)
Q Consensus 136 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~ 211 (326)
++|......-.... +-+ ..+...|..+.|+|.. ..|++|+-|++|+|||++.+. .+.. +.|
T Consensus 237 ~lw~~~~g~W~vd~-----~Pf-~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh-------- 301 (440)
T KOG0302|consen 237 HLWEPSTGSWKVDQ-----RPF-TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAH-------- 301 (440)
T ss_pred EeeeeccCceeecC-----ccc-cccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ecc--------
Confidence 99986542211000 001 1245679999999975 899999999999999999873 2222 333
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC--CCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEECC
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~ 288 (326)
...|+.+.|+.. .+ +||+|+.||+++|||+|.. .+|+..|+.|..+|++|.|+|. ...|++++.|.+|.+||+.
T Consensus 302 -~sDVNVISWnr~-~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 302 -NSDVNVISWNRR-EP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred -CCceeeEEccCC-cc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 356889999864 33 8999999999999999853 3689999999999999999997 4577799999999999986
Q ss_pred CC-------------------eEEEEEcceecceEEEEEECCCC-CEEEEeccCcc
Q 020454 289 TG-------------------KLLGCFIGKCSGSIRSIARHPTL-PIIASCGFLEA 324 (326)
Q Consensus 289 ~~-------------------~~~~~~~~~~~~~v~~l~~~p~~-~~l~s~s~D~~ 324 (326)
-. +++..-++ ...|..+.||+.- .+|++.+.||.
T Consensus 379 vE~D~ee~~~~a~~~L~dlPpQLLFVHqG--Qke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 379 VEADEEEIDQEAAEGLQDLPPQLLFVHQG--QKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred ccCChhhhccccccchhcCCceeEEEecc--hhHhhhheeccCCCCeEEEecccce
Confidence 31 12222222 4568899999854 48899998883
No 122
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=1.7e-21 Score=162.77 Aligned_cols=299 Identities=13% Similarity=0.146 Sum_probs=193.9
Q ss_pred CCCCCCC--eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc
Q 020454 8 ECPGCPP--LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (326)
Q Consensus 8 ~~~~~~~--~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~ 85 (326)
.-+.||. -.|..++++|.|.++|.....-...+. +-..-..+-..++.+.|.. .+..|++++.|.++++||+.++
T Consensus 56 sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~-~lk~~~aH~nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 56 SFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEER-QLKKPLAHKNAIFDLKWAP--GESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred cccCCCCccceEEEecCCCceeeecchhhhcchhhh-hhcccccccceeEeeccCC--CceeEEEccCCceeeeeeeccc
Confidence 3345555 458889999999999988651111111 0011234556666666665 4457999999999999999988
Q ss_pred ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc---------cccc-------
Q 020454 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------SAES------- 149 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~---------~~~~------- 149 (326)
++...-..+ +|.+.+..+++.+. +...+++|+.||.+.|||+..... ..+.
T Consensus 133 ~l~G~~~~~------GH~~SvkS~cf~~~-------n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 133 RLVGGRLNL------GHTGSVKSECFMPT-------NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred eeecceeec------ccccccchhhhccC-------CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 876653222 67788888876552 346799999999999999875441 0111
Q ss_pred ---ccceEEEEEccCCCceEE---EEEcCCCCEEEEecC-CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454 150 ---SCSTVKSWNVCASGTIAF---SKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (326)
Q Consensus 150 ---~~~~~~~~~~~~~~~v~~---~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (326)
....++.|... ...|.+ +-+..|...||+++. |+.|++||+++....+..........-......+--+.+.
T Consensus 200 skp~~kr~~k~kA~-s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~ 278 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAA-SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI 278 (720)
T ss_pred Cchhhccccccccc-cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE
Confidence 11122333332 223443 445557888888887 9999999999876655543332222111111112222333
Q ss_pred ecCCCcEEEEEeCCCeEEEEeCCCCC-CceeEEeecCC---ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE-EEEEc
Q 020454 223 SIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRET---PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFI 297 (326)
Q Consensus 223 p~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~---~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~-~~~~~ 297 (326)
-+..|.+|++.+.|+.|++|+++... .|+..+.++.. .+.+ ..+|++.++++|+.|...++|.+.+.+. ...+.
T Consensus 279 lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~ 357 (720)
T KOG0321|consen 279 LDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLL 357 (720)
T ss_pred ecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeee-ecCCCCceEeccCCCcceeeeeecCccCChhhhh
Confidence 33345566666669999999988542 35555544321 2333 5789999999999999999999988654 45567
Q ss_pred ceecceEEEEEECCCC-CEEEEeccCccC
Q 020454 298 GKCSGSIRSIARHPTL-PIIASCGFLEAA 325 (326)
Q Consensus 298 ~~~~~~v~~l~~~p~~-~~l~s~s~D~~~ 325 (326)
+| .-.|++++|.|.. .-+++|+.|-.+
T Consensus 358 Gh-t~eVt~V~w~pS~~t~v~TcSdD~~~ 385 (720)
T KOG0321|consen 358 GH-TREVTTVRWLPSATTPVATCSDDFRV 385 (720)
T ss_pred Cc-ceEEEEEeeccccCCCceeeccCcce
Confidence 88 9999999999732 347788888653
No 123
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=1.4e-22 Score=161.08 Aligned_cols=225 Identities=11% Similarity=0.091 Sum_probs=167.4
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..+++.+.|+.+++|++... .+..++..+.. -+.++-+.-... .+++|+.|.+|++||+.......++...
T Consensus 232 ~~~iAas~d~~~r~Wnvd~~-----r~~~TLsGHtd--kVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt~l~~ 302 (459)
T KOG0288|consen 232 KHVIAASNDKNLRLWNVDSL-----RLRHTLSGHTD--KVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKTVLPG 302 (459)
T ss_pred ceEEeecCCCceeeeeccch-----hhhhhhccccc--ceeeehhhcccc--ceeeccccchhhhhhhhhhheecccccc
Confidence 67899999999999999987 55556654433 344444432222 3899999999999999876665554421
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.....|.+ ....++++..|++|++||..... . ...+...+.|.++..++++
T Consensus 303 ------S~cnDI~~-------------~~~~~~SgH~DkkvRfwD~Rs~~--------~--~~sv~~gg~vtSl~ls~~g 353 (459)
T KOG0288|consen 303 ------SQCNDIVC-------------SISDVISGHFDKKVRFWDIRSAD--------K--TRSVPLGGRVTSLDLSMDG 353 (459)
T ss_pred ------ccccceEe-------------cceeeeecccccceEEEeccCCc--------e--eeEeecCcceeeEeeccCC
Confidence 11122321 12468999999999999976533 2 2233446799999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
..|.+++.|.++.+.|+++.+....+.... ++....++.+.|+| ++.++++|+.||.|+||++.++ +....+
T Consensus 354 ~~lLsssRDdtl~viDlRt~eI~~~~sA~g-----~k~asDwtrvvfSp--d~~YvaAGS~dgsv~iW~v~tg-KlE~~l 425 (459)
T KOG0288|consen 354 LELLSSSRDDTLKVIDLRTKEIRQTFSAEG-----FKCASDWTRVVFSP--DGSYVAAGSADGSVYIWSVFTG-KLEKVL 425 (459)
T ss_pred eEEeeecCCCceeeeecccccEEEEeeccc-----cccccccceeEECC--CCceeeeccCCCcEEEEEccCc-eEEEEe
Confidence 999999999999999999887655544322 22224478999999 5669999999999999999987 555555
Q ss_pred eecCC--ceEEEEecCCCCeEEEEcCCCcEEEE
Q 020454 255 DFRET--PIKAVAEEPDSFNIYIGNGSGDLASV 285 (326)
Q Consensus 255 ~~~~~--~i~~v~~s~~~~~l~~g~~dg~v~iw 285 (326)
..... .|++++|+|.|.++++++.++.+.+|
T Consensus 426 ~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 426 SLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 54433 59999999999999999999999999
No 124
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.3e-21 Score=161.43 Aligned_cols=235 Identities=15% Similarity=0.161 Sum_probs=182.3
Q ss_pred eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (326)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~ 132 (326)
.++++++.... +.||++..||.|.+|++..+=+....-.- +.+..|.+++|. .+..|++.+.+
T Consensus 27 ~I~slA~s~kS--~~lAvsRt~g~IEiwN~~~~w~~~~vi~g------~~drsIE~L~W~---------e~~RLFS~g~s 89 (691)
T KOG2048|consen 27 EIVSLAYSHKS--NQLAVSRTDGNIEIWNLSNNWFLEPVIHG------PEDRSIESLAWA---------EGGRLFSSGLS 89 (691)
T ss_pred ceEEEEEeccC--CceeeeccCCcEEEEccCCCceeeEEEec------CCCCceeeEEEc---------cCCeEEeecCC
Confidence 34455554333 35999999999999999876554443321 445789999974 35789999999
Q ss_pred CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (326)
Q Consensus 133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (326)
|.|.-||+.... ..+..+ ...+.|.+++.+|.+..+++|+.||.+..++...++..+...-. +.
T Consensus 90 g~i~EwDl~~lk--------~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~-------rq 153 (691)
T KOG2048|consen 90 GSITEWDLHTLK--------QKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM-------RQ 153 (691)
T ss_pred ceEEEEecccCc--------eeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc-------cc
Confidence 999999987644 333444 34678999999999999999999998888888887776653322 22
Q ss_pred CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-----e---cCCceEEEEecCCCCeEEEEcCCCcEEE
Q 020454 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-----F---RETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (326)
Q Consensus 213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~---~~~~i~~v~~s~~~~~l~~g~~dg~v~i 284 (326)
...|.+++|.| ++..+++|+.||.|++||...+ ..++... . ..--|.+|.|-. ...|++|+..|+|.+
T Consensus 154 ~sRvLslsw~~--~~~~i~~Gs~Dg~Iriwd~~~~-~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~F 229 (691)
T KOG2048|consen 154 KSRVLSLSWNP--TGTKIAGGSIDGVIRIWDVKSG-QTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTF 229 (691)
T ss_pred cceEEEEEecC--CccEEEecccCceEEEEEcCCC-ceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEE
Confidence 35688999998 4557999999999999999977 3344211 1 223467777664 458999999999999
Q ss_pred EECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
||...+.+++.+..| ...|.+|+..+++..++++|.|+.+
T Consensus 230 Wd~~~gTLiqS~~~h-~adVl~Lav~~~~d~vfsaGvd~~i 269 (691)
T KOG2048|consen 230 WDSIFGTLIQSHSCH-DADVLALAVADNEDRVFSAGVDPKI 269 (691)
T ss_pred EcccCcchhhhhhhh-hcceeEEEEcCCCCeEEEccCCCce
Confidence 999999999999998 9999999999999999999999864
No 125
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.5e-21 Score=148.55 Aligned_cols=265 Identities=11% Similarity=0.102 Sum_probs=187.0
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc-------e
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-------L 87 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~-------~ 87 (326)
=|++||+.|+.|+|||..+. .+.......|.. +...+..+.|++..-++.+|+++.|+++.||+-.... .
T Consensus 26 RRmAtCSsDq~vkI~d~~~~-s~~W~~Ts~Wra--h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~W 102 (361)
T KOG2445|consen 26 RRMATCSSDQTVKIWDSTSD-SGTWSCTSSWRA--HDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRW 102 (361)
T ss_pred ceeeeccCCCcEEEEeccCC-CCceEEeeeEEe--cCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccccee
Confidence 68999999999999998665 788888778874 4456778899999999999999999999999753111 1
Q ss_pred eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc-------
Q 020454 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC------- 160 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~------- 160 (326)
+..... ......|..+.|.+.+ .+-++++++.||.++||+.-... .++.|.+.
T Consensus 103 v~~ttl------~DsrssV~DV~FaP~h------lGLklA~~~aDG~lRIYEA~dp~--------nLs~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 103 VRRTTL------VDSRSSVTDVKFAPKH------LGLKLAAASADGILRIYEAPDPM--------NLSQWTLQHEIQNVI 162 (361)
T ss_pred EEEEEe------ecCCcceeEEEecchh------cceEEEEeccCcEEEEEecCCcc--------ccccchhhhhhhhcc
Confidence 111111 1233678878776654 46689999999999999854322 33444432
Q ss_pred -----CCCceEEEEEcCCC---CEEEEecCC-----CeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454 161 -----ASGTIAFSKVDISE---KFSLFGGKG-----VEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (326)
Q Consensus 161 -----~~~~v~~~~~~~~~---~~l~sg~~d-----~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 226 (326)
+..+..|+.|+|.. .+||.|+.+ +.+.||...... .-..+.... .++..|++++|.|+-.
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~------d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP------DHTDPIRDISWAPNIG 236 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC------CCCCcceeeeeccccC
Confidence 23468899999854 788888776 478888876543 222222111 2346799999999632
Q ss_pred --CcEEEEEeCCCeEEEEeCCCCC-------------------CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEE
Q 020454 227 --HRKFVAGTNDHQVRLYDTSAQR-------------------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285 (326)
Q Consensus 227 --~~~l~~~~~dg~v~iwd~~~~~-------------------~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iw 285 (326)
-.+||+++.|| |+||.++... +.+..+..|+..|..+.|+-.|..|++.+.||.|++|
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 24789999999 9999987421 1234566789999999999999999999999999999
Q ss_pred ECCC---CeEEEEEcceecceEEEEEECC
Q 020454 286 DIRT---GKLLGCFIGKCSGSIRSIARHP 311 (326)
Q Consensus 286 d~~~---~~~~~~~~~~~~~~v~~l~~~p 311 (326)
...- -++...+.. ++.+....|.+
T Consensus 316 kany~n~~kC~sv~~~--e~~~~~~~~~~ 342 (361)
T KOG2445|consen 316 KANYNNLWKCTSVLKA--EGSVTKPDFSQ 342 (361)
T ss_pred hhhhhhhheeeeEEec--cCCCCCccccc
Confidence 7642 244444543 34455555543
No 126
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.8e-21 Score=167.71 Aligned_cols=232 Identities=11% Similarity=0.061 Sum_probs=182.2
Q ss_pred eEEEEEeeeCCCCCeEEEEecCCcEEEEecccc-ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (326)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~ 131 (326)
....++++++.+ +|++++.||.|++|+.... +....+. .....+.+++. ..+.+++++.
T Consensus 15 G~t~i~~d~~ge--fi~tcgsdg~ir~~~~~sd~e~P~ti~--------~~g~~v~~ia~----------~s~~f~~~s~ 74 (933)
T KOG1274|consen 15 GLTLICYDPDGE--FICTCGSDGDIRKWKTNSDEEEPETID--------ISGELVSSIAC----------YSNHFLTGSE 74 (933)
T ss_pred ceEEEEEcCCCC--EEEEecCCCceEEeecCCcccCCchhh--------ccCceeEEEee----------cccceEEeec
Confidence 355666665544 8999999999999987544 2222222 13356776765 4579999999
Q ss_pred CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (326)
++.|.+|.+.... .++.+..+. -++.+++++.+|+++|.|+.|-.|++-++......+.+.+|.
T Consensus 75 ~~tv~~y~fps~~-----~~~iL~Rft----lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~------- 138 (933)
T KOG1274|consen 75 QNTVLRYKFPSGE-----EDTILARFT----LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD------- 138 (933)
T ss_pred cceEEEeeCCCCC-----ccceeeeee----ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC-------
Confidence 9999999976533 344454444 489999999999999999999999999999888888888876
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-------ec-CCceEEEEecCCCCeEEEEcCCCcEE
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-------FR-ETPIKAVAEEPDSFNIYIGNGSGDLA 283 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~-~~~i~~v~~s~~~~~l~~g~~dg~v~ 283 (326)
..|.++.|+| .+++||+.+.||.|++||+..+ ....++. .. ...+..++|+|+|..+++-..|+.|+
T Consensus 139 --apVl~l~~~p--~~~fLAvss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vk 213 (933)
T KOG1274|consen 139 --APVLQLSYDP--KGNFLAVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVK 213 (933)
T ss_pred --CceeeeeEcC--CCCEEEEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEE
Confidence 5688999999 4569999999999999999865 3333332 22 45678899999988899889999999
Q ss_pred EEECCCCeEEEEEcce-ecceEEEEEECCCCCEEEEeccCccC
Q 020454 284 SVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 284 iwd~~~~~~~~~~~~~-~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+|+..+.+....+... +...+..+.|+|.|+|||+++.||.+
T Consensus 214 vy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I 256 (933)
T KOG1274|consen 214 VYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQI 256 (933)
T ss_pred EEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcE
Confidence 9999999998888742 24459999999999999999999875
No 127
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.9e-22 Score=165.53 Aligned_cols=229 Identities=11% Similarity=0.087 Sum_probs=176.8
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.|++|..+|.|.|||.... +....... .+...+-+++|. ...+.+|+.||.|..+|+...+......
T Consensus 230 ~~LavG~~~g~v~iwD~~~~-----k~~~~~~~-~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~-- 297 (484)
T KOG0305|consen 230 SHLAVGTSDGTVQIWDVKEQ-----KKTRTLRG-SHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTL-- 297 (484)
T ss_pred CEEEEeecCCeEEEEehhhc-----cccccccC-CcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhh--
Confidence 56889999999999998866 23223332 134444445553 3479999999999999998666544421
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC-
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 173 (326)
+.|...|.++.+.. +..++++++.|+.+.|||..... -.++++ .+...|..++|+|-
T Consensus 298 -----~~H~qeVCgLkws~--------d~~~lASGgnDN~~~Iwd~~~~~-------p~~~~~--~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 298 -----QGHRQEVCGLKWSP--------DGNQLASGGNDNVVFIWDGLSPE-------PKFTFT--EHTAAVKALAWCPWQ 355 (484)
T ss_pred -----hcccceeeeeEECC--------CCCeeccCCCccceEeccCCCcc-------ccEEEe--ccceeeeEeeeCCCc
Confidence 36778999999876 67899999999999999973322 123333 35778999999995
Q ss_pred CCEEEEec--CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEE--EeCCCeEEEEeCCCCCC
Q 020454 174 EKFSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQRR 249 (326)
Q Consensus 174 ~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~--~~~dg~v~iwd~~~~~~ 249 (326)
..+||+|+ .|+.|++||..+++.+..... ...|+++.|++.. +.|++ |..++.|.||+..+. .
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt----------gsQVcsL~Wsk~~--kEi~sthG~s~n~i~lw~~ps~-~ 422 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTGARIDSVDT----------GSQVCSLIWSKKY--KELLSTHGYSENQITLWKYPSM-K 422 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCCcEeccccc----------CCceeeEEEcCCC--CEEEEecCCCCCcEEEEecccc-c
Confidence 58899865 789999999998888766433 2569999999853 24444 456779999999987 6
Q ss_pred ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~ 290 (326)
.+..+.+|...|..++++|||..|++|+.|.++++|++-..
T Consensus 423 ~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 423 LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 68899999999999999999999999999999999998764
No 128
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.6e-21 Score=150.35 Aligned_cols=274 Identities=13% Similarity=0.137 Sum_probs=177.2
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc---cceeeee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN---GDLRVAI 91 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~---~~~~~~~ 91 (326)
-.|+|+..|+.||+|+++.......+ +.+..-+-.... .+.|.++-.. +++..-...++++|.... |.....+
T Consensus 99 K~lat~~~Dr~Ir~w~~~DF~~~eHr-~~R~nve~dhpT--~V~FapDc~s-~vv~~~~g~~l~vyk~~K~~dG~~~~~~ 174 (420)
T KOG2096|consen 99 KKLATISGDRSIRLWDVRDFENKEHR-CIRQNVEYDHPT--RVVFAPDCKS-VVVSVKRGNKLCVYKLVKKTDGSGSHHF 174 (420)
T ss_pred ceeEEEeCCceEEEEecchhhhhhhh-HhhccccCCCce--EEEECCCcce-EEEEEccCCEEEEEEeeecccCCCCccc
Confidence 67999999999999999865111111 111111111222 3344433332 344445567899997642 2221111
Q ss_pred cc---cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454 92 SN---AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (326)
Q Consensus 92 ~~---~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 168 (326)
.. .+.+ ..+.-.+..+...+ ...+|.+++.|..|.+|++.... +...+. ....-+..
T Consensus 175 v~~D~~~f~--~kh~v~~i~iGiA~--------~~k~imsas~dt~i~lw~lkGq~---------L~~idt-nq~~n~~a 234 (420)
T KOG2096|consen 175 VHIDNLEFE--RKHQVDIINIGIAG--------NAKYIMSASLDTKICLWDLKGQL---------LQSIDT-NQSSNYDA 234 (420)
T ss_pred ccccccccc--hhcccceEEEeecC--------CceEEEEecCCCcEEEEecCCce---------eeeecc-ccccccce
Confidence 11 1111 13334455444433 56789999999999999987332 111121 12345567
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCc--------eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454 169 KVDISEKFSLFGGKGVEVNVWDLDKC--------EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (326)
Q Consensus 169 ~~~~~~~~l~sg~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~ 240 (326)
+++|+|+++++++.--.+++|.+--+ ..++.+++|. ..|...+|++ +...+++.+.||+++
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~---------saV~~~aFsn--~S~r~vtvSkDG~wr 303 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ---------SAVLAAAFSN--SSTRAVTVSKDGKWR 303 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch---------hheeeeeeCC--CcceeEEEecCCcEE
Confidence 89999999999999999999996422 2456666665 5688999998 455899999999999
Q ss_pred EEeCCCC----CC--ceeEE----eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEEC
Q 020454 241 LYDTSAQ----RR--PVMSF----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (326)
Q Consensus 241 iwd~~~~----~~--~~~~~----~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 310 (326)
+||+.-. +. .++.. ....+.-..++++|.|..|+.+. ...+++|..++|+....+..-|.+.|.+|+|+
T Consensus 304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~ 382 (420)
T KOG2096|consen 304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYS 382 (420)
T ss_pred EeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEec
Confidence 9996521 11 11221 11122334789999999888754 44899999999988877764339999999999
Q ss_pred CCCCEEEEeccCccC
Q 020454 311 PTLPIIASCGFLEAA 325 (326)
Q Consensus 311 p~~~~l~s~s~D~~~ 325 (326)
++|++++||| |+++
T Consensus 383 ~~g~~~atcG-dr~v 396 (420)
T KOG2096|consen 383 SDGKYIATCG-DRYV 396 (420)
T ss_pred CCCcEEeeec-ceee
Confidence 9999999998 5554
No 129
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=1.1e-22 Score=156.30 Aligned_cols=207 Identities=13% Similarity=0.058 Sum_probs=159.1
Q ss_pred CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc-------cccc-c-cceEEEEEccCCCceEEEEEc
Q 020454 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-------SAES-S-CSTVKSWNVCASGTIAFSKVD 171 (326)
Q Consensus 101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~-------~~~~-~-~~~~~~~~~~~~~~v~~~~~~ 171 (326)
.|..++.+.++.+ ++..+++|+.|..|+|.|++.... ..+. . ..++..--..+..+|+++.||
T Consensus 110 ~HK~~cR~aafs~--------DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 110 SHKSPCRAAAFSP--------DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred ecccceeeeeeCC--------CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 5567777666544 667889999999999999873111 1111 1 112222223457789999999
Q ss_pred CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce
Q 020454 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (326)
Q Consensus 172 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 251 (326)
|....|++|+.|++|++||+........++-.. ....|.+++|+|. |.+|++|+.-.++++||+.+. ++.
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-------d~~~vrsiSfHPs--GefllvgTdHp~~rlYdv~T~-Qcf 251 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-------DTEPVRSISFHPS--GEFLLVGTDHPTLRLYDVNTY-QCF 251 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhh-------ccceeeeEeecCC--CceEEEecCCCceeEEeccce-eEe
Confidence 999999999999999999998644332222211 2246889999994 569999999999999999986 433
Q ss_pred eEE---eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-ceecceEEEEEECCCCCEEEEeccCccC
Q 020454 252 MSF---DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 252 ~~~---~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..- ..|...|++|.+++.|++.++|+.||.|++||=-+++++.++. +|-...|.+..|..++++|.+.|.|..+
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV 329 (430)
T ss_pred eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence 322 2578899999999999999999999999999999999998885 5545689999999999999999999765
No 130
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.7e-21 Score=156.92 Aligned_cols=228 Identities=14% Similarity=0.132 Sum_probs=170.3
Q ss_pred CCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeee
Q 020454 11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA 90 (326)
Q Consensus 11 ~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~ 90 (326)
.|..--+++|+.+-.|.||+..+. ..+..|. .+...++.++|...+. .|++++.|++|++|+++...++.+
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~-----ehv~~~~--ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vet 281 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTL-----EHVKVFK--GHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVET 281 (479)
T ss_pred cCCCcEEEecCCCceEEEecCccc-----chhhccc--ccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHH
Confidence 344466888999999999999987 4444444 4556667777765555 499999999999999988777776
Q ss_pred ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE
Q 020454 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (326)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 170 (326)
+. .|++.|.++.... ....+-++..|.++++|++... +-.++. .+...+.|++|
T Consensus 282 ly--------GHqd~v~~IdaL~--------reR~vtVGgrDrT~rlwKi~ee---------sqlifr-g~~~sidcv~~ 335 (479)
T KOG0299|consen 282 LY--------GHQDGVLGIDALS--------RERCVTVGGRDRTVRLWKIPEE---------SQLIFR-GGEGSIDCVAF 335 (479)
T ss_pred Hh--------CCccceeeechhc--------ccceEEeccccceeEEEecccc---------ceeeee-CCCCCeeeEEE
Confidence 65 6678888887655 3345555669999999998432 222333 33568899998
Q ss_pred cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC---cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG---IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (326)
Q Consensus 171 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~ 247 (326)
-. ...|++|+.+|.|.+|++.+.++++..+......-. +..+.||++++..|..+ ++++|+.+|.|++|-+..+
T Consensus 336 In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd--L~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 336 IN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD--LLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCc--eEEecCCCCceEEEEecCC
Confidence 84 566779999999999999999999886643322222 33456999999999644 9999999999999998866
Q ss_pred C---CceeEEeecCCceEEEEecCCCCeEEEEc
Q 020454 248 R---RPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (326)
Q Consensus 248 ~---~~~~~~~~~~~~i~~v~~s~~~~~l~~g~ 277 (326)
. .++..+. -.+.|++++|+++|+.|++|.
T Consensus 413 ~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 413 LRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence 3 3445554 457899999999999887663
No 131
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=7.7e-21 Score=147.13 Aligned_cols=286 Identities=12% Similarity=0.174 Sum_probs=205.0
Q ss_pred CCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCC--CCeEEEEecCCcEEEEecccccee
Q 020454 11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN--DPLLAVARKNGLTDILNPLNGDLR 88 (326)
Q Consensus 11 ~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~dg~i~i~~~~~~~~~ 88 (326)
+|....+++......+.+++.... +...+.+++.++++.+....++|..+.. +++||+|+.-|.|+|.|+.++++.
T Consensus 51 ~~~e~~vfatvG~~rvtiy~c~~d--~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~ 128 (385)
T KOG1034|consen 51 GCDEPQVFATVGGNRVTIYECPGD--GGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS 128 (385)
T ss_pred CCCCCceEEEeCCcEEEEEEECCc--cceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc
Confidence 455555666666667888988865 3345778888888888888888875544 689999999999999999999887
Q ss_pred eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE--ccCCCceE
Q 020454 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIA 166 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~ 166 (326)
..+. .|.+.|..+.+.+. ..+++++++.|-.|++|++.... .+.++- ..|...|.
T Consensus 129 ~~~~--------ghG~sINeik~~p~-------~~qlvls~SkD~svRlwnI~~~~--------Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 129 KNYR--------GHGGSINEIKFHPD-------RPQLVLSASKDHSVRLWNIQTDV--------CVAVFGGVEGHRDEVL 185 (385)
T ss_pred ccee--------ccCccchhhhcCCC-------CCcEEEEecCCceEEEEeccCCe--------EEEEecccccccCcEE
Confidence 7776 56678887776552 34689999999999999988654 333332 23567899
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec------------------CCCCCC-CCcCCCCceeeeEEeecCCC
Q 020454 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK------------------PPPKNS-LGIFTPTWFTSAAFLSIDDH 227 (326)
Q Consensus 167 ~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~------------------~~~~~~-~~~~~~~~v~~~~~~p~~~~ 227 (326)
+++|++++.+|+++|.|..|.+|++...+....+. .+-... -.-.|..+|-++.|. +
T Consensus 186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~----g 261 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF----G 261 (385)
T ss_pred EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH----h
Confidence 99999999999999999999999998532111100 000000 011144567777775 3
Q ss_pred cEEEEEeCCCeEEEEeCCCCCC-------------ceeEEeecCCceEEE--EecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454 228 RKFVAGTNDHQVRLYDTSAQRR-------------PVMSFDFRETPIKAV--AEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 228 ~~l~~~~~dg~v~iwd~~~~~~-------------~~~~~~~~~~~i~~v--~~s~~~~~l~~g~~dg~v~iwd~~~~~~ 292 (326)
+++++-+.++.|..|.+-..++ .+..+......|.-+ +|.|.++.|+.|.+.|.|++||++..++
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 4889999999999998821111 123344444455555 4556799999999999999999997655
Q ss_pred EE--EEcc-eecceEEEEEECCCCCEEEEeccCccC
Q 020454 293 LG--CFIG-KCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 293 ~~--~~~~-~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.. ++.. .....|+..+|+.++.+|+....|+++
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V 377 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTV 377 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcE
Confidence 21 1211 114579999999999999999999875
No 132
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2e-21 Score=161.41 Aligned_cols=281 Identities=16% Similarity=0.202 Sum_probs=192.6
Q ss_pred ccccCCCCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc
Q 020454 4 TTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL 83 (326)
Q Consensus 4 ~~~~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~ 83 (326)
+.++++.| ..|++|++||.||||++.++ .-+..+.-. ..+.++.|...+.-.+||++-... +.|.+..
T Consensus 405 ~iSvdp~G---~wlasGsdDGtvriWEi~Tg-----Rcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~ 472 (733)
T KOG0650|consen 405 SISVDPSG---EWLASGSDDGTVRIWEIATG-----RCVRTVQFD---SEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPI 472 (733)
T ss_pred EEEecCCc---ceeeecCCCCcEEEEEeecc-----eEEEEEeec---ceeEEEEecCCCCceeEEEEecCc-eEEeCcc
Confidence 44556655 88999999999999999988 333333322 244456666666666666665554 5555554
Q ss_pred ccceeee------ecccCCCC----------------CC-------CCCCCeeeeecccccccccCCCCceEEEEecC--
Q 020454 84 NGDLRVA------ISNAGDSG----------------AQ-------PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-- 132 (326)
Q Consensus 84 ~~~~~~~------~~~~~~~~----------------~~-------~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~-- 132 (326)
-|..+.. +....+.. .+ .+..+|..+.+.. .+.+|++...+
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--------kGDYlatV~~~~~ 544 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR--------KGDYLATVMPDSG 544 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec--------CCceEEEeccCCC
Confidence 3311111 00000000 00 1223444444433 45566665443
Q ss_pred -CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454 133 -GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 133 -g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (326)
..|.|+++..... ..-++ ...+.+.++.|||...+|++++. ..|+|||+..++.+.++...
T Consensus 545 ~~~VliHQLSK~~s--------Q~PF~-kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg-------- 606 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKS--------QSPFR-KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG-------- 606 (733)
T ss_pred cceEEEEecccccc--------cCchh-hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--------
Confidence 4566666654321 11111 12567999999999988888665 58999999988777765442
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC---
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR--- 288 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~--- 288 (326)
..||..++.+|. |..|+.++.|+.+..||+.-..+|.+++..|...+++|+|++.-.++++|+.||++.||.-.
T Consensus 607 -~kwiS~msihp~--GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~ 683 (733)
T KOG0650|consen 607 -SKWISSMSIHPN--GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN 683 (733)
T ss_pred -CeeeeeeeecCC--CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence 268999999985 44799999999999999987667889999999999999999999999999999999998532
Q ss_pred ---CC---eEEEEEcceecce----EEEEEECCCCCEEEEeccCccCC
Q 020454 289 ---TG---KLLGCFIGKCSGS----IRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 289 ---~~---~~~~~~~~~~~~~----v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
.. -++..+++| ... |....|||..++|+++|.||+++
T Consensus 684 Dl~qnpliVPlK~L~gH-~~~~~~gVLd~~wHP~qpWLfsAGAd~tir 730 (733)
T KOG0650|consen 684 DLLQNPLIVPLKRLRGH-EKTNDLGVLDTIWHPRQPWLFSAGADGTIR 730 (733)
T ss_pred hhhcCCceEeeeeccCc-eeecccceEeecccCCCceEEecCCCceEE
Confidence 11 346778887 554 88889999999999999999864
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=2.3e-19 Score=148.65 Aligned_cols=257 Identities=13% Similarity=0.142 Sum_probs=170.0
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeE-EEEecCCcEEEEeccccceeeeeccc
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-++++..+|.+++||..++ +....+...... ..+.+ +++++.+ +++..++.|++||..+++....+..
T Consensus 3 ~~~s~~~d~~v~~~d~~t~-----~~~~~~~~~~~~---~~l~~--~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~- 71 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATL-----EVTRTFPVGQRP---RGITL--SKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS- 71 (300)
T ss_pred EEEEecCCCEEEEEECCCC-----ceEEEEECCCCC---CceEE--CCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-
Confidence 3678889999999999876 344444332222 22333 3344455 5677889999999988877655442
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEE-EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~-~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (326)
+.. +..+.+.+ +++.+++ +..++.+++||+.... .+.... ....+..++++|+
T Consensus 72 -------~~~-~~~~~~~~--------~g~~l~~~~~~~~~l~~~d~~~~~--------~~~~~~--~~~~~~~~~~~~d 125 (300)
T TIGR03866 72 -------GPD-PELFALHP--------NGKILYIANEDDNLVTVIDIETRK--------VLAEIP--VGVEPEGMAVSPD 125 (300)
T ss_pred -------CCC-ccEEEECC--------CCCEEEEEcCCCCeEEEEECCCCe--------EEeEee--CCCCcceEEECCC
Confidence 112 23344433 4455544 4568999999986432 233322 2335678999999
Q ss_pred CCEEEEecCCC-eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCCeEEEEeCCCCCCce
Q 020454 174 EKFSLFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRRPV 251 (326)
Q Consensus 174 ~~~l~sg~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg~v~iwd~~~~~~~~ 251 (326)
+++++++..++ .+.+||.++++........ .....++|+| ++++|+ ++..++.|++||+.+. +.+
T Consensus 126 g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~----------~~~~~~~~s~--dg~~l~~~~~~~~~v~i~d~~~~-~~~ 192 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTKTYEIVDNVLVD----------QRPRFAEFTA--DGKELWVSSEIGGTVSVIDVATR-KVI 192 (300)
T ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEEcC----------CCccEEEECC--CCCEEEEEcCCCCEEEEEEcCcc-eee
Confidence 99999888765 5677899877665432211 1234678887 455664 5556999999999976 444
Q ss_pred eEEeecC-------CceEEEEecCCCCeEEEE-cCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe-ccC
Q 020454 252 MSFDFRE-------TPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC-GFL 322 (326)
Q Consensus 252 ~~~~~~~-------~~i~~v~~s~~~~~l~~g-~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~-s~D 322 (326)
..+..+. .....++|+|++++++++ ..++.+.+||+++++.+..+. + ...+.+++|+|++++|+++ +.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~-~~~~~~~~~~~~g~~l~~~~~~~ 270 (300)
T TIGR03866 193 KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-V-GQRVWQLAFTPDEKYLLTTNGVS 270 (300)
T ss_pred eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-e-CCCcceEEECCCCCEEEEEcCCC
Confidence 4443221 123568899999986654 456789999999988876654 2 4579999999999999876 456
Q ss_pred cc
Q 020454 323 EA 324 (326)
Q Consensus 323 ~~ 324 (326)
+.
T Consensus 271 ~~ 272 (300)
T TIGR03866 271 ND 272 (300)
T ss_pred Ce
Confidence 64
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=3.1e-21 Score=155.35 Aligned_cols=274 Identities=15% Similarity=0.115 Sum_probs=186.1
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
--+++|+..|.|-+||+.+.......+ ..+..+..++..+-|+... ...+++.+.||+|++-|++++.....+..
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v-~~f~~hs~~Vs~l~F~P~n---~s~i~ssSyDGtiR~~D~~~~i~e~v~s~- 275 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQEKDKDGV-YLFTPHSGPVSGLKFSPAN---TSQIYSSSYDGTIRLQDFEGNISEEVLSL- 275 (498)
T ss_pred eEEEEccCCCcEEEEecCCCCCccCce-EEeccCCccccceEecCCC---hhheeeeccCceeeeeeecchhhHHHhhc-
Confidence 458889999999999996431111222 2333333444434343332 23599999999999999976665333332
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
......+.++.+.. .+..++.+..=|...+||++..+. ....|.+. ...|..++++|..
T Consensus 276 -----~~d~~~fs~~d~~~--------e~~~vl~~~~~G~f~~iD~R~~~s-------~~~~~~lh-~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 276 -----DTDNIWFSSLDFSA--------ESRSVLFGDNVGNFNVIDLRTDGS-------EYENLRLH-KKKITSVALNPVC 334 (498)
T ss_pred -----CccceeeeeccccC--------CCccEEEeecccceEEEEeecCCc-------cchhhhhh-hcccceeecCCCC
Confidence 11223455555433 456788888888999999886542 23334433 4489999999976
Q ss_pred -CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC---CCCCc
Q 020454 175 -KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS---AQRRP 250 (326)
Q Consensus 175 -~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~---~~~~~ 250 (326)
.+|||++.|++.+|||++....... .-...+.|...|.+..|+|. ++ .|++.+.|..|+|||.. ....+
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs-~g-tl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPS-GG-TLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCC-CC-ceEeeccCCceEEeecccccccCCc
Confidence 7899999999999999986443222 01112345578999999996 45 49999999999999984 33345
Q ss_pred eeEEeecCC-----ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEE-EECCCCCEEEEecc
Q 020454 251 VMSFDFRET-----PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI-ARHPTLPIIASCGF 321 (326)
Q Consensus 251 ~~~~~~~~~-----~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l-~~~p~~~~l~s~s~ 321 (326)
...+..... ......|.|+..+|++|..-..|-|||-..++.+..+.......|.++ .|||-+..+++||.
T Consensus 408 ~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~ 484 (498)
T KOG4328|consen 408 LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGN 484 (498)
T ss_pred cceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCC
Confidence 555543211 223448999999999999999999999999998888766534466665 79998876666653
No 135
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=3.3e-21 Score=170.19 Aligned_cols=248 Identities=13% Similarity=0.062 Sum_probs=184.5
Q ss_pred EEeeeCCCCCeEEEEe--cCCcEEEEeccc----cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454 57 ASIDDSQNDPLLAVAR--KNGLTDILNPLN----GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (326)
Q Consensus 57 ~~~~~~~~~~~l~~g~--~dg~i~i~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~ 130 (326)
++.+-++++..+++|+ .||.++||+.+. .+...............|.+.|.++.|.+ ++.+|++|+
T Consensus 17 fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~--------dG~~lAsGS 88 (942)
T KOG0973|consen 17 FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP--------DGSYLASGS 88 (942)
T ss_pred EEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC--------CCCeEeecc
Confidence 4445566777899999 999999998741 00000100011122346778999887766 778999999
Q ss_pred cCCcEEEEEccccc--ccccc--------ccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee
Q 020454 131 TKGKASMRSIEVTK--VSAES--------SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (326)
Q Consensus 131 ~~g~v~i~~~~~~~--~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 200 (326)
+|..|.+|...... ..-++ ....+.++. .|...|..+.|+|++.+|++++.|++|.|||.++.+.+..+
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCccEEEEecccceEEEEccccceeeeee
Confidence 99999999987411 01111 112333333 47789999999999999999999999999999999888888
Q ss_pred cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee------cCCceEEEEecCCCCeEE
Q 020454 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF------RETPIKAVAEEPDSFNIY 274 (326)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~~~~i~~v~~s~~~~~l~ 274 (326)
.+|. ..|.++.|.| -|++||+-+.|++|++|++... ...+.+.. ....+..+.|||||.+|+
T Consensus 168 ~~H~---------s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw-~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 168 RGHQ---------SLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDW-GIEKSITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred eccc---------ccccceEECC--ccCeeeeecCCceEEEEEcccc-eeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence 8876 4577899998 5779999999999999997754 33444432 234678899999999999
Q ss_pred EEcCC----CcEEEEECCCCeEEEEEcceecceEEEEEECCC-----CC------------EEEEeccCccCC
Q 020454 275 IGNGS----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT-----LP------------IIASCGFLEAAS 326 (326)
Q Consensus 275 ~g~~d----g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~-----~~------------~l~s~s~D~~~~ 326 (326)
+...- ..+.|.+-.+.+.-..+-|| .+++..+.|+|. .. ++|+||.|+..+
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~LvGH-~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS 307 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLVGH-SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS 307 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeeecC-CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence 76542 35888888777878889998 999999999972 22 789999999764
No 136
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=6e-21 Score=147.50 Aligned_cols=279 Identities=15% Similarity=0.169 Sum_probs=201.3
Q ss_pred eeeeeecCcccEEEEEecCCc--CC--Cc---ceeeeccCCCCCceEEEEEee-----eCCCCCeEEEEecCCcEEEEec
Q 020454 15 LRALTFDSLGLIKVIEARGEH--GG--VP---KVVERWGDPHSSNCVLAASID-----DSQNDPLLAVARKNGLTDILNP 82 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~--~~--~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~g~~dg~i~i~~~ 82 (326)
-.+++-+++..+++|++.... .+ .. +....+. -.+...+...+|. ..++..++++.+.+.-|++||.
T Consensus 62 SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r-~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wda 140 (406)
T KOG2919|consen 62 SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYR-YQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDA 140 (406)
T ss_pred ceEEeecccCeeeEEecChhhcccCCCCccccccceeEE-eccCCEEEEEEeeeccccCCCccceeeeccccCceeeeec
Confidence 678999999999999986541 11 11 1111111 1344566667765 4566779999999999999999
Q ss_pred cccceeeeecccCCCCCCCCCCCe---eeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc
Q 020454 83 LNGDLRVAISNAGDSGAQPEDDGI---VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV 159 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i---~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~ 159 (326)
.+|++...++.+ .+...+ .++.+. +++.-+.++....|+++|+......... -.++..=+.
T Consensus 141 ftG~lraSy~~y------dh~de~taAhsL~Fs---------~DGeqlfaGykrcirvFdt~RpGr~c~v-y~t~~~~k~ 204 (406)
T KOG2919|consen 141 FTGKLRASYRAY------DHQDEYTAAHSLQFS---------PDGEQLFAGYKRCIRVFDTSRPGRDCPV-YTTVTKGKF 204 (406)
T ss_pred cccccccchhhh------hhHHhhhhheeEEec---------CCCCeEeecccceEEEeeccCCCCCCcc-hhhhhcccc
Confidence 999998888765 222222 336653 3455566667888999998543210000 000000011
Q ss_pred cCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-CC
Q 020454 160 CASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH 237 (326)
Q Consensus 160 ~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-dg 237 (326)
...+-|.+++++|-. +.++.|+....+-||.-..+++++.+.+|. ..|+.+.|.+ +|+.|++|.. |-
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~---------gGvThL~~~e--dGn~lfsGaRk~d 273 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG---------GGVTHLQWCE--DGNKLFSGARKDD 273 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC---------CCeeeEEecc--CcCeecccccCCC
Confidence 224568899999966 699999999999999988888888877765 6689999998 5668888865 77
Q ss_pred eEEEEeCCCCCCceeEEeecCC-ceEEE--EecCCCCeEEEEcCCCcEEEEECCC-CeEEEEEcceecceEEEEEECCCC
Q 020454 238 QVRLYDTSAQRRPVMSFDFRET-PIKAV--AEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTL 313 (326)
Q Consensus 238 ~v~iwd~~~~~~~~~~~~~~~~-~i~~v--~~s~~~~~l~~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~~p~~ 313 (326)
.|..||+|..+.++..+..|.. .-..| ...|++++|++|+.||.|++||+++ +..+..+..+ ...++.++++|--
T Consensus 274 kIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~-sd~vNgvslnP~m 352 (406)
T KOG2919|consen 274 KILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY-SDTVNGVSLNPIM 352 (406)
T ss_pred eEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc-cccccceecCccc
Confidence 9999999987788887776544 22223 5568899999999999999999998 7777778887 9999999999999
Q ss_pred CEEEEeccC
Q 020454 314 PIIASCGFL 322 (326)
Q Consensus 314 ~~l~s~s~D 322 (326)
+++|+++.-
T Consensus 353 pilatssGq 361 (406)
T KOG2919|consen 353 PILATSSGQ 361 (406)
T ss_pred ceeeeccCc
Confidence 999998754
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.3e-23 Score=176.12 Aligned_cols=215 Identities=19% Similarity=0.256 Sum_probs=175.3
Q ss_pred EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccc
Q 020454 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA 147 (326)
Q Consensus 68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~ 147 (326)
++.....-.+++||..... .|...+.++.... ....++.|+.+-.+.+|.+.......
T Consensus 7 ~m~~~~~t~Lr~~~~~~~~--------------~hsaav~~lk~~~--------s~r~~~~Gg~~~k~~L~~i~kp~~i~ 64 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTREFV--------------AHSAAVGCLKIRK--------SSRSLVTGGEDEKVNLWAIGKPNAIT 64 (825)
T ss_pred cceeeeeeccccccchhhh--------------hhhhhhceeeeec--------cceeeccCCCceeeccccccCCchhh
Confidence 4455555667788864221 2223444444311 44578889999999999877654221
Q ss_pred ccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC
Q 020454 148 ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH 227 (326)
Q Consensus 148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 227 (326)
.+. .+..+|.++.|++...+|+.|+.+|+|++||++..+.+..+.+|..+ +.++.|+| -+
T Consensus 65 --------S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~---------~~sv~f~P--~~ 124 (825)
T KOG0267|consen 65 --------SLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN---------ITSVDFHP--YG 124 (825)
T ss_pred --------eee-ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC---------cceeeecc--ce
Confidence 122 35779999999999999999999999999999999988888887744 45778999 45
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEE
Q 020454 228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI 307 (326)
Q Consensus 228 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 307 (326)
.+++.|+.|+.+++||.+.. .+.+.+..|...+..+.|+|+|++++.|++|..++|||+..|+++..|+.| .+.|.++
T Consensus 125 ~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-e~~v~sl 202 (825)
T KOG0267|consen 125 EFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-EGKVQSL 202 (825)
T ss_pred EEeccccccccceehhhhcc-CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc-ccccccc
Confidence 58899999999999999965 678999999999999999999999999999999999999999999999998 9999999
Q ss_pred EECCCCCEEEEeccCccCC
Q 020454 308 ARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 308 ~~~p~~~~l~s~s~D~~~~ 326 (326)
.|+|..-++++||.|+.++
T Consensus 203 e~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 203 EFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred ccCchhhhhccCCCCceee
Confidence 9999999999999999763
No 138
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=1e-22 Score=159.39 Aligned_cols=196 Identities=14% Similarity=0.224 Sum_probs=142.0
Q ss_pred CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEE
Q 020454 100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179 (326)
Q Consensus 100 ~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 179 (326)
..|.+.|.+++..+.+ -..+++|+.||.|++|++..... ++.++ .+.+.|..+.++. ..+++
T Consensus 63 ~gHrdGV~~lakhp~~-------ls~~aSGs~DG~VkiWnlsqR~~--------~~~f~-AH~G~V~Gi~v~~--~~~~t 124 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNK-------LSTVASGSCDGEVKIWNLSQREC--------IRTFK-AHEGLVRGICVTQ--TSFFT 124 (433)
T ss_pred cccccccchhhcCcch-------hhhhhccccCceEEEEehhhhhh--------hheee-cccCceeeEEecc--cceEE
Confidence 3667778888875532 25799999999999999987542 22222 1234455555543 33344
Q ss_pred ecCCCeEEEEE--------------------------------------CCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454 180 GGKGVEVNVWD--------------------------------------LDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (326)
Q Consensus 180 g~~d~~i~iwd--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (326)
+|.|.+|+.|- .+...++..+.-. ...+.++.|
T Consensus 125 vgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG---------~Dti~svkf 195 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWG---------ADSISSVKF 195 (433)
T ss_pred ecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecC---------CCceeEEec
Confidence 45555555554 4433333332211 134788899
Q ss_pred eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEccee
Q 020454 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKC 300 (326)
Q Consensus 222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~ 300 (326)
+|.. ...|++|..|+.|.+||+|.. .|++.+... ..-+.++|+|.+--+++|++|..++.||++.. +++..+.+|
T Consensus 196 NpvE-TsILas~~sDrsIvLyD~R~~-~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh- 271 (433)
T KOG0268|consen 196 NPVE-TSILASCASDRSIVLYDLRQA-SPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH- 271 (433)
T ss_pred CCCc-chheeeeccCCceEEEecccC-Cccceeeee-ccccceecCccccceeeccccccceehhhhhhcccchhhccc-
Confidence 9974 448999999999999999987 777776543 55688999998878889999999999999975 567788898
Q ss_pred cceEEEEEECCCCCEEEEeccCccCC
Q 020454 301 SGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 301 ~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
...|.+++|+|.|+-+++||.|++++
T Consensus 272 vsAV~dVdfsptG~EfvsgsyDksIR 297 (433)
T KOG0268|consen 272 VSAVMDVDFSPTGQEFVSGSYDKSIR 297 (433)
T ss_pred ceeEEEeccCCCcchhccccccceEE
Confidence 99999999999999999999999863
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=5e-21 Score=153.59 Aligned_cols=246 Identities=15% Similarity=0.183 Sum_probs=179.4
Q ss_pred CCeeeeeecCcccEEEEEecCCcCCCcceee--------------eccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEE
Q 020454 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVE--------------RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTD 78 (326)
Q Consensus 13 ~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~ 78 (326)
+..-++.|..+-.|.|||+.-.+.-.+.+.. ..+...+...+++++|... ...+||+|+.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCceEE
Confidence 3467899999999999998654322221110 1111233444444544332 234799999999999
Q ss_pred EEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE
Q 020454 79 ILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN 158 (326)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~ 158 (326)
+||+.+++....+. .+.+.|.++.|++. ....+++|+.|+++.+.|.+... ..-+.|.
T Consensus 270 lWD~~~g~p~~s~~--------~~~k~Vq~l~wh~~-------~p~~LLsGs~D~~V~l~D~R~~~-------~s~~~wk 327 (463)
T KOG0270|consen 270 LWDVDTGKPKSSIT--------HHGKKVQTLEWHPY-------EPSVLLSGSYDGTVALKDCRDPS-------NSGKEWK 327 (463)
T ss_pred EEEcCCCCcceehh--------hcCCceeEEEecCC-------CceEEEeccccceEEeeeccCcc-------ccCceEE
Confidence 99999999877776 45688999998773 34689999999999999987522 2345666
Q ss_pred ccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCc-eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC
Q 020454 159 VCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (326)
Q Consensus 159 ~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d 236 (326)
. .+.|..++|+|.. ..++++..||+++-+|+|+. +++++++.|. ..|+++++++...+ ++++++.|
T Consensus 328 ~--~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd---------~~ISgl~~n~~~p~-~l~t~s~d 395 (463)
T KOG0270|consen 328 F--DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHD---------DEISGLSVNIQTPG-LLSTASTD 395 (463)
T ss_pred e--ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEecc---------CCcceEEecCCCCc-ceeecccc
Confidence 5 5689999999865 77888899999999999985 8899988876 45788898876444 89999999
Q ss_pred CeEEEEeCCCCC-CceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeEE
Q 020454 237 HQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLL 293 (326)
Q Consensus 237 g~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~~ 293 (326)
+.|++|++.... +.+......-+...|.++.|+- -.++.|+..+.++|||+.+...+
T Consensus 396 ~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 396 KVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999999987431 1233322333456777788874 45668888889999999887654
No 140
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=8.6e-21 Score=160.04 Aligned_cols=217 Identities=13% Similarity=0.167 Sum_probs=171.2
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeee-eecccccccccCCCCceEEEEecCCcEEEEEcccccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVG-LHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~ 145 (326)
.+++++.||++++|+-..++.+..... +.+.+-|.. +.+.+ ++...+++++.|..+.+|......
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~------~~~~g~i~~~i~y~e-------~~~~~l~~g~~D~~i~v~~~~~~~- 92 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAF------EGPKGFIANSICYAE-------SDKGRLVVGGMDTTIIVFKLSQAE- 92 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceec------ccCcceeeccceecc-------ccCcceEeecccceEEEEecCCCC-
Confidence 589999999999999876666553332 133455544 44433 145679999999999999876544
Q ss_pred ccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC
Q 020454 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (326)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 225 (326)
++..+. .|+..|.+++...++. +++|+.|.++++|-.. +....+++|+ ..|-++++.|.
T Consensus 93 -------P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~---------asVWAv~~l~e- 151 (745)
T KOG0301|consen 93 -------PLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHT---------ASVWAVASLPE- 151 (745)
T ss_pred -------chhhhh-ccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcc---------hheeeeeecCC-
Confidence 333333 4677899999887777 8899999999999864 4444566655 44668888874
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEE
Q 020454 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (326)
Q Consensus 226 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 305 (326)
+ .+++|+.|++|++|.-. ..+++|.+|..-|+.+++-+++ .+++++.||.|++|++ +|+.+.++.+| ..-|.
T Consensus 152 -~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~gh-tn~vY 223 (745)
T KOG0301|consen 152 -N-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGH-TNFVY 223 (745)
T ss_pred -C-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeecc-ceEEE
Confidence 3 89999999999999864 4578999999999999997654 6778899999999999 78999999998 99999
Q ss_pred EEEECCCCCEEEEeccCccCC
Q 020454 306 SIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 306 ~l~~~p~~~~l~s~s~D~~~~ 326 (326)
++...+++..++|+|.||+++
T Consensus 224 sis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 224 SISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred EEEecCCCCeEEEecCCceEE
Confidence 999878888999999999863
No 141
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.8e-19 Score=130.65 Aligned_cols=236 Identities=14% Similarity=0.111 Sum_probs=169.8
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeee--CCCCCeEEEEec-CCcEEEEeccccceeeee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDD--SQNDPLLAVARK-NGLTDILNPLNGDLRVAI 91 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~ 91 (326)
-.++||+.|..||+...+.......-.-..+..+... +-.++|.+ ...+.+|++++. |-.|.+-|...|+-...+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgt--irdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGT--IRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCc--eeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 4578899999999987664411111111233333333 33455543 344455665543 455666677677655554
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc------CCCce
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC------ASGTI 165 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~v 165 (326)
. .|.+.|..+..|+ +-.+++++.|.+|++||++.... ++..+.. ....|
T Consensus 180 s--------ghtghilalyswn---------~~m~~sgsqdktirfwdlrv~~~--------v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 180 S--------GHTGHILALYSWN---------GAMFASGSQDKTIRFWDLRVNSC--------VNTLDNDFHDGGLESSAV 234 (350)
T ss_pred c--------CCcccEEEEEEec---------CcEEEccCCCceEEEEeeeccce--------eeeccCcccCCCccccee
Confidence 4 6778898877654 45899999999999999886542 2222211 12468
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC
Q 020454 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (326)
Q Consensus 166 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~ 245 (326)
..+++.|.|++|++|-.|....+||++.++++..+..|. ..|.++.|+|. ..++++|+.|..|++-|+.
T Consensus 235 aav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phs---------adir~vrfsp~--a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS---------ADIRCVRFSPG--AHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCc---------cceeEEEeCCC--ceEEEEecccceEEEeecc
Confidence 999999999999999999999999999999999988776 45789999995 4599999999999999987
Q ss_pred CC---CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 246 AQ---RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 246 ~~---~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
.. +-++.....|...+-.+.|+|+.--+++.+.|.++.+|-+.
T Consensus 304 gdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 304 GDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 32 23455555677777777999999899999999999999764
No 142
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=9.8e-21 Score=144.63 Aligned_cols=205 Identities=19% Similarity=0.160 Sum_probs=153.7
Q ss_pred CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc--ccccccceEEEEEcc----CCCceEEEEEcC-C
Q 020454 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--SAESSCSTVKSWNVC----ASGTIAFSKVDI-S 173 (326)
Q Consensus 101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~--~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~ 173 (326)
.|.+.|..|..-+. .+.++++|+.||.+.+||+..... .++.-...+.+.... |.-.|..+.|-| +
T Consensus 41 ~HgGsvNsL~id~t-------egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLT-------EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred cCCCccceeeeccc-------cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence 55678888876442 357899999999999999986442 222112222221111 223588888888 4
Q ss_pred CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC-CcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVM 252 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~ 252 (326)
..++.+++-|.++++||..+.+....++- +..|++-+++|-.- ..++|+|..+-+|++-|+.++ ...+
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~a~~F~m----------e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH 182 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQEAVDFKM----------EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSH 182 (397)
T ss_pred CceeecccccceEEEeecccceeeEEeec----------CceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-ccee
Confidence 57888999999999999998776555432 24466777777533 458889999999999999988 6789
Q ss_pred EEeecCCceEEEEecCCCCeE-EEEcCCCcEEEEECCCC-eE--------------EEEEcceecceEEEEEECCCCCEE
Q 020454 253 SFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTG-KL--------------LGCFIGKCSGSIRSIARHPTLPII 316 (326)
Q Consensus 253 ~~~~~~~~i~~v~~s~~~~~l-~~g~~dg~v~iwd~~~~-~~--------------~~~~~~~~~~~v~~l~~~p~~~~l 316 (326)
++.+|...|.+|.|+|...++ ++|+.||.|++||++.. -+ ++.-..| .+.|++++|..++.++
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah-~gkvngla~tSd~~~l 261 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAH-YGKVNGLAWTSDARYL 261 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccc-cceeeeeeecccchhh
Confidence 999999999999999997765 59999999999999853 11 1112355 8899999999999999
Q ss_pred EEeccCcc
Q 020454 317 ASCGFLEA 324 (326)
Q Consensus 317 ~s~s~D~~ 324 (326)
++++.|..
T Consensus 262 ~~~gtd~r 269 (397)
T KOG4283|consen 262 ASCGTDDR 269 (397)
T ss_pred hhccCccc
Confidence 99998864
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.8e-20 Score=148.60 Aligned_cols=229 Identities=14% Similarity=0.127 Sum_probs=163.3
Q ss_pred CCCCCeEEEEecCCcEEEEeccccc-eeeeecc------------cCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454 62 SQNDPLLAVARKNGLTDILNPLNGD-LRVAISN------------AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (326)
Q Consensus 62 ~~~~~~l~~g~~dg~i~i~~~~~~~-~~~~~~~------------~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~ 128 (326)
...++|+|+|+.|..|.|||+.=-. ....+.. ......+.|...+..|.+.. . ..+.|++
T Consensus 189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~-~------~~nVLaS 261 (463)
T KOG0270|consen 189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR-N------FRNVLAS 261 (463)
T ss_pred CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc-c------cceeEEe
Confidence 3456799999999999999985111 1111100 00011124556666666422 1 3568999
Q ss_pred EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCce---eeeeecCCC
Q 020454 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCE---KIWTAKPPP 204 (326)
Q Consensus 129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~---~~~~~~~~~ 204 (326)
++.|.+|.+||++..+.. .... .+.++|.+++|+|.. .+|++|+.|+++.+.|.+... ..++
T Consensus 262 gsaD~TV~lWD~~~g~p~--------~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk----- 327 (463)
T KOG0270|consen 262 GSADKTVKLWDVDTGKPK--------SSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK----- 327 (463)
T ss_pred cCCCceEEEEEcCCCCcc--------eehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-----
Confidence 999999999999876532 2222 457899999999975 899999999999999998421 1222
Q ss_pred CCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEE
Q 020454 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLA 283 (326)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~ 283 (326)
....|-.++|.|.. ...+++++.||+|+-+|+|...+++.+++.|+.+|.++++++. -.++++++.|+.|+
T Consensus 328 -------~~g~VEkv~w~~~s-e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 328 -------FDGEVEKVAWDPHS-ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred -------eccceEEEEecCCC-ceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence 22457788999874 4488999999999999999887899999999999999999986 45677999999999
Q ss_pred EEECCCCeE--EEEEcceecceEEEEEECCCCCE-EEEec
Q 020454 284 SVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPI-IASCG 320 (326)
Q Consensus 284 iwd~~~~~~--~~~~~~~~~~~v~~l~~~p~~~~-l~s~s 320 (326)
+|++..... ++.-.-. .+...|.++.|+-.+ ++.||
T Consensus 400 lw~~~~~~~~~v~~~~~~-~~rl~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 400 LWKFDVDSPKSVKEHSFK-LGRLHCFALDPDVAFTLAFGG 438 (463)
T ss_pred EEeecCCCCccccccccc-ccceeecccCCCcceEEEecC
Confidence 999975433 2211111 445678888887765 44444
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=5.8e-20 Score=148.27 Aligned_cols=270 Identities=13% Similarity=0.156 Sum_probs=191.3
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCC-eEEEEecCCcEEEEeccccceeeeeccc
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-+++++.||.+++|.+.+. ... .++...-...+ +-.++|.+ .+. .+++++.......||+++.++.+.-...
T Consensus 227 lllvaG~d~~lrifqvDGk-~N~--~lqS~~l~~fP--i~~a~f~p--~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~ 299 (514)
T KOG2055|consen 227 LLLVAGLDGTLRIFQVDGK-VNP--KLQSIHLEKFP--IQKAEFAP--NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY 299 (514)
T ss_pred eEEEecCCCcEEEEEecCc-cCh--hheeeeeccCc--cceeeecC--CCceEEEecccceEEEEeeccccccccccCCC
Confidence 4899999999999999976 211 11121111222 22334443 333 6888999999999999888874433322
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
. ..+..+......+ ++++|+..+..|.|.+......+. +..+. -.+.|..+.|+.++
T Consensus 300 g-----~e~~~~e~FeVSh--------d~~fia~~G~~G~I~lLhakT~el--------i~s~K--ieG~v~~~~fsSds 356 (514)
T KOG2055|consen 300 G-----VEEKSMERFEVSH--------DSNFIAIAGNNGHIHLLHAKTKEL--------ITSFK--IEGVVSDFTFSSDS 356 (514)
T ss_pred C-----cccchhheeEecC--------CCCeEEEcccCceEEeehhhhhhh--------hheee--eccEEeeEEEecCC
Confidence 1 1112333333323 667999999999999887655442 22222 26789999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC-----CCC
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-----QRR 249 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~-----~~~ 249 (326)
+.|++.+.+|.|.+||++...++...... ..|....+.+..++.+||+|+..|.|.|||..+ ..+
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~----------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk 426 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCLHRFVDD----------GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPK 426 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceEEEEeec----------CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCC
Confidence 99988899999999999998777665432 223444444444677999999999999999542 235
Q ss_pred ceeEEeecCCceEEEEecCCCCeEEEEcC--CCcEEEEECCCCeEEEEEcce--ecceEEEEEECCCCCEEEEeccCccC
Q 020454 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~--dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
|+..+..-...|++++|+++++.|+.++. ...+++-.+.+-.....|+.. ..+.|+|++|+|.+.+||.|-.+|.+
T Consensus 427 Pik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv 506 (514)
T KOG2055|consen 427 PIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV 506 (514)
T ss_pred chhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCce
Confidence 77777777789999999999999986664 567999999887776666531 15679999999999999999988865
No 145
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=9.2e-21 Score=147.41 Aligned_cols=231 Identities=15% Similarity=0.201 Sum_probs=166.7
Q ss_pred CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc
Q 020454 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (326)
Q Consensus 66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~ 145 (326)
..+|++..+|+|++||..+++.+..+... ...+.++.+.... ....+++|+.||.|++||++....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~--------~~~~N~vrf~~~d------s~h~v~s~ssDG~Vr~wD~Rs~~e 106 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP--------PATTNGVRFISCD------SPHGVISCSSDGTVRLWDIRSQAE 106 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCC--------CCcccceEEecCC------CCCeeEEeccCCeEEEEEeecchh
Confidence 46999999999999999999988888743 2344445544311 245799999999999999986553
Q ss_pred ccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC----CCeEEEEECCCcee-eeeecCCCCCCCCcCCCCceeeeE
Q 020454 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK----GVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAA 220 (326)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~ 220 (326)
. ....|....+.+..+++....++.+++|.. +..+.+||++..+. +..+.. .|...|+++.
T Consensus 107 ~------a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e--------SH~DDVT~lr 172 (376)
T KOG1188|consen 107 S------ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE--------SHNDDVTQLR 172 (376)
T ss_pred h------hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh--------hccCcceeEE
Confidence 2 233444444567889998888899988754 56699999998766 333221 2346699999
Q ss_pred EeecCCCcEEEEEeCCCeEEEEeCCCCC--CceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCC-------
Q 020454 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQR--RPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG------- 290 (326)
Q Consensus 221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~------- 290 (326)
|+|+ +.++|++|+.||.|.+||+.... .++...-.+...|..+.|..++ +.|.+-+......+|+++.+
T Consensus 173 FHP~-~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 173 FHPS-DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred ecCC-CCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 9997 56699999999999999988432 2333343566778888998775 45778888888999987652
Q ss_pred ------------------------------------------------------eEEEEEcceecceEEEEEECCCCCEE
Q 020454 291 ------------------------------------------------------KLLGCFIGKCSGSIRSIARHPTLPII 316 (326)
Q Consensus 291 ------------------------------------------------------~~~~~~~~~~~~~v~~l~~~p~~~~l 316 (326)
+.+..+.+++..-|+++.|...+.++
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l 331 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVL 331 (376)
T ss_pred CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccccee
Confidence 11223344336667888888788899
Q ss_pred EEeccCccC
Q 020454 317 ASCGFLEAA 325 (326)
Q Consensus 317 ~s~s~D~~~ 325 (326)
.|||.||.+
T Consensus 332 ~TGGEDG~l 340 (376)
T KOG1188|consen 332 YTGGEDGLL 340 (376)
T ss_pred eccCCCceE
Confidence 999999864
No 146
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.6e-19 Score=159.13 Aligned_cols=278 Identities=15% Similarity=0.173 Sum_probs=187.7
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCC-CceEEEEEeeeCCCCCeEEEEecCCcEEEEecc-cc----cee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS-SNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NG----DLR 88 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~-~~----~~~ 88 (326)
-.++++++.-.|+|||.+.+ +....|..... ...+..+.+....+..++++|+.||.|+||+-- ++ +++
T Consensus 1077 p~i~~ad~r~~i~vwd~e~~-----~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV 1151 (1387)
T KOG1517|consen 1077 PQIAAADDRERIRVWDWEKG-----RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV 1151 (1387)
T ss_pred ceeEEcCCcceEEEEecccC-----ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeE
Confidence 45788888999999999987 55555554333 345556777777777799999999999999642 22 222
Q ss_pred eeecccCCC-CCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEE
Q 020454 89 VAISNAGDS-GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (326)
Q Consensus 89 ~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 167 (326)
.....+... ....+.+.+. . |.. ..+.|++++.-..|+|||.+.+... .-.-......+++
T Consensus 1152 Taw~~Ls~~~~~~r~~~~v~--d-WqQ-------~~G~Ll~tGd~r~IRIWDa~~E~~~--------~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1152 TAWSSLSDQLPGARGTGLVV--D-WQQ-------QSGHLLVTGDVRSIRIWDAHKEQVV--------ADIPYGSSTLVTA 1213 (1387)
T ss_pred EeeccccccCccCCCCCeee--e-hhh-------hCCeEEecCCeeEEEEEecccceeE--------eecccCCCcccee
Confidence 222221110 0012223222 2 222 4567888888899999998765522 1112223456777
Q ss_pred EEEcCC-CCEEEEecCCCeEEEEECCCcee---eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454 168 SKVDIS-EKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (326)
Q Consensus 168 ~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd 243 (326)
+..+.. |+.++.|..||.|++||.+...+ +...+.|... ..|..+.+.+...+ .|++|+.||.|++||
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~-------~~Iv~~slq~~G~~-elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV-------EPIVHLSLQRQGLG-ELVSGSQDGDIQLLD 1285 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc-------ccceeEEeecCCCc-ceeeeccCCeEEEEe
Confidence 765543 69999999999999999886432 3344444321 22778888875455 799999999999999
Q ss_pred CCCC-CCceeEEeec---CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc------ceecceEEEEEECCCC
Q 020454 244 TSAQ-RRPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI------GKCSGSIRSIARHPTL 313 (326)
Q Consensus 244 ~~~~-~~~~~~~~~~---~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~------~~~~~~v~~l~~~p~~ 313 (326)
+|.. .....++..| .+..+++..+++...+|+|+. +.|+||++. |+.+..++ +...+.+.+++|||..
T Consensus 1286 lR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1286 LRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred cccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchh
Confidence 9973 2222233332 125999999999999999999 899999986 44433322 2235678999999999
Q ss_pred CEEEEeccCccC
Q 020454 314 PIIASCGFLEAA 325 (326)
Q Consensus 314 ~~l~s~s~D~~~ 325 (326)
..+|.|+.|..+
T Consensus 1364 ~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1364 LLLAAGSADSTV 1375 (1387)
T ss_pred HhhhhccCCceE
Confidence 999999988775
No 147
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=1.3e-19 Score=151.95 Aligned_cols=157 Identities=16% Similarity=0.120 Sum_probs=119.7
Q ss_pred eEEEEEcC-CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454 165 IAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (326)
Q Consensus 165 v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd 243 (326)
|+.+.|+| +...||+++.|+.|++|.+..+........ +...+ -.+...|+++.|+|-. .+.|++++.|-+|++||
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t-Pe~~l-t~h~eKI~slRfHPLA-advLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT-PEKIL-TIHGEKITSLRFHPLA-ADVLAVASYDSTIELWD 706 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC-cceee-ecccceEEEEEecchh-hhHhhhhhccceeeeee
Confidence 77888888 458899999999999999875432111100 00000 1133569999999964 34899999999999999
Q ss_pred CCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe-EEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454 244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
+++. .....+.+|...|..++|||+|+.+++-+.||+|++|+.++++ +++.-++.....--.|.|.-++++|+..|.|
T Consensus 707 l~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 707 LANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhhh-hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 9987 4567888999999999999999999999999999999998764 3444444323344467888899999999999
Q ss_pred ccC
Q 020454 323 EAA 325 (326)
Q Consensus 323 ~~~ 325 (326)
+..
T Consensus 786 k~S 788 (1012)
T KOG1445|consen 786 KSS 788 (1012)
T ss_pred ccc
Confidence 753
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=1e-17 Score=138.74 Aligned_cols=250 Identities=12% Similarity=0.079 Sum_probs=160.3
Q ss_pred eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEE-EecCCcEEEEeccccceeeeecccC
Q 020454 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAV-ARKNGLTDILNPLNGDLRVAISNAG 95 (326)
Q Consensus 17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~dg~i~i~~~~~~~~~~~~~~~~ 95 (326)
++++..++.|++||..++ +....+...... . .+.+ ++.++.+++ +..++.|++||+.+++.+..+..
T Consensus 46 ~~~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~-~--~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-- 113 (300)
T TIGR03866 46 YVCASDSDTIQVIDLATG-----EVIGTLPSGPDP-E--LFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-- 113 (300)
T ss_pred EEEECCCCeEEEEECCCC-----cEEEeccCCCCc-c--EEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--
Confidence 467788999999999876 333333322221 1 2333 344555554 45689999999987766555432
Q ss_pred CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC-cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG-KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g-~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
...+.++.+.+ ++..++++..++ .+.+|+..... .+.... .......+.|+|++
T Consensus 114 -------~~~~~~~~~~~--------dg~~l~~~~~~~~~~~~~d~~~~~--------~~~~~~--~~~~~~~~~~s~dg 168 (300)
T TIGR03866 114 -------GVEPEGMAVSP--------DGKIVVNTSETTNMAHFIDTKTYE--------IVDNVL--VDQRPRFAEFTADG 168 (300)
T ss_pred -------CCCcceEEECC--------CCCEEEEEecCCCeEEEEeCCCCe--------EEEEEE--cCCCccEEEECCCC
Confidence 02244455544 556777777665 45666754322 111111 23345778999999
Q ss_pred CEEE-EecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE-EEEeCCCeEEEEeCCCCCCcee
Q 020454 175 KFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRRPVM 252 (326)
Q Consensus 175 ~~l~-sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~ 252 (326)
++|+ ++..++.|++||+++++.+..+........ ........++|+| +++++ ++...++.+.+||++++ +.+.
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~s~--dg~~~~~~~~~~~~i~v~d~~~~-~~~~ 243 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH--PEAVQPVGIKLTK--DGKTAFVALGPANRVAVVDAKTY-EVLD 243 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc--cccCCccceEECC--CCCEEEEEcCCCCeEEEEECCCC-cEEE
Confidence 8775 445689999999998876655432211100 0011234677887 44454 44456778999999876 4344
Q ss_pred EEeecCCceEEEEecCCCCeEEEE-cCCCcEEEEECCCCeEEEEEcceecceEEEEEECC
Q 020454 253 SFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (326)
Q Consensus 253 ~~~~~~~~i~~v~~s~~~~~l~~g-~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 311 (326)
.+ .+...+.+++|+|+|++|+++ ..+|.|++||+++++++.+++. ....+.|+++|
T Consensus 244 ~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~ 300 (300)
T TIGR03866 244 YL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV--GRLPWGVVVRP 300 (300)
T ss_pred EE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc--ccccceeEeCC
Confidence 33 344578999999999999876 4689999999999999998874 34558888875
No 149
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=8.5e-20 Score=151.82 Aligned_cols=244 Identities=16% Similarity=0.129 Sum_probs=175.2
Q ss_pred CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~ 129 (326)
+...+.+++.. ..+.+|++|+.||+|+||.+.++..+..+..- +.|.+++|.+. .+..++++
T Consensus 399 Htg~Vr~iSvd--p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---------~~I~~vaw~P~-------~~~~vLAv 460 (733)
T KOG0650|consen 399 HTGLVRSISVD--PSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---------SEIRSVAWNPL-------SDLCVLAV 460 (733)
T ss_pred cCCeEEEEEec--CCcceeeecCCCCcEEEEEeecceEEEEEeec---------ceeEEEEecCC-------CCceeEEE
Confidence 33344445444 45669999999999999999999998887752 57888886542 23345555
Q ss_pred ecCCcEEEEEcccccc----------cc----ccccceEEEEEc--------------cCCCceEEEEEcCCCCEEEEec
Q 020454 130 TTKGKASMRSIEVTKV----------SA----ESSCSTVKSWNV--------------CASGTIAFSKVDISEKFSLFGG 181 (326)
Q Consensus 130 ~~~g~v~i~~~~~~~~----------~~----~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~sg~ 181 (326)
...+.+.+.+-..... .+ ...+..+..|.- .+...|..+.||..|.||++..
T Consensus 461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 5555455554322210 00 112233444442 3455799999999999999866
Q ss_pred CC---CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC
Q 020454 182 KG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE 258 (326)
Q Consensus 182 ~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 258 (326)
.+ ..|.|+++...+...-++. ....|.++.|+|... +|++++ ...|+|||+..+ ..++.+....
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~k---------skG~vq~v~FHPs~p--~lfVaT-q~~vRiYdL~kq-elvKkL~tg~ 607 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRK---------SKGLVQRVKFHPSKP--YLFVAT-QRSVRIYDLSKQ-ELVKKLLTGS 607 (733)
T ss_pred cCCCcceEEEEecccccccCchhh---------cCCceeEEEecCCCc--eEEEEe-ccceEEEehhHH-HHHHHHhcCC
Confidence 54 4588888875443222211 113478999999643 677776 578999999865 5677777777
Q ss_pred CceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 259 ~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..|..++.+|.|..|+.|+.|+.+..||+.-. ++.++++.| ...|++++||+.-+++++|+.||++
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H~ryPLfas~sdDgtv 674 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFHKRYPLFASGSDDGTV 674 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhccccceeeeecCCCcE
Confidence 89999999999999999999999999999854 566677777 9999999999999999999999976
No 150
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=4.1e-19 Score=135.44 Aligned_cols=198 Identities=15% Similarity=0.116 Sum_probs=146.2
Q ss_pred CCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEE-EEccCCCceEEEEEcC--CCCEEEEe
Q 020454 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS-WNVCASGTIAFSKVDI--SEKFSLFG 180 (326)
Q Consensus 104 ~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~l~sg 180 (326)
+.|.++.+-+ +..++++-. +..|.+|+++....... .+.. -........++-+|+| +++.+++
T Consensus 124 g~i~cvew~P--------ns~klasm~-dn~i~l~~l~ess~~va----ev~ss~s~e~~~~ftsg~WspHHdgnqv~t- 189 (370)
T KOG1007|consen 124 GKINCVEWEP--------NSDKLASMD-DNNIVLWSLDESSKIVA----EVLSSESAEMRHSFTSGAWSPHHDGNQVAT- 189 (370)
T ss_pred CceeeEEEcC--------CCCeeEEec-cCceEEEEcccCcchhe----eecccccccccceecccccCCCCccceEEE-
Confidence 5778888655 444555554 89999999876442100 0000 0011234567777887 6788877
Q ss_pred cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCc
Q 020454 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (326)
Q Consensus 181 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 260 (326)
..|+++..||+++.+....+.... ...|..+.|.|+.. .+|++|+.||.|+|||.|..+.|+.++..|...
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAH--------gq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW 260 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAH--------GQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW 260 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhh--------cceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceE
Confidence 468899999999887766654322 23488899999754 489999999999999999888899999999999
Q ss_pred eEEEEecCC-CCeEEEEcCCCcEEEEECCC-----------------------------CeEEEEEcceecceEEEEEEC
Q 020454 261 IKAVAEEPD-SFNIYIGNGSGDLASVDIRT-----------------------------GKLLGCFIGKCSGSIRSIARH 310 (326)
Q Consensus 261 i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~-----------------------------~~~~~~~~~~~~~~v~~l~~~ 310 (326)
+.+|.|+|. .++|++|+.|..|.+|...+ .-.+.+|..| +..|.+++|+
T Consensus 261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh-EDSVY~~aWS 339 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH-EDSVYALAWS 339 (370)
T ss_pred EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc-ccceEEEeec
Confidence 999999997 56777999999999997543 1134567777 9999999999
Q ss_pred CCCCE-EEEeccCccC
Q 020454 311 PTLPI-IASCGFLEAA 325 (326)
Q Consensus 311 p~~~~-l~s~s~D~~~ 325 (326)
...++ +|+-|+||.+
T Consensus 340 sadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 340 SADPWIFASLSYDGRV 355 (370)
T ss_pred cCCCeeEEEeccCceE
Confidence 87774 6677999863
No 151
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=146.46 Aligned_cols=234 Identities=15% Similarity=0.134 Sum_probs=173.8
Q ss_pred ceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCc-eEEEEe
Q 020454 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR-TLLTCT 130 (326)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~l~~~~ 130 (326)
..+..+.| .+..++|++++.||+++||.+. |+.-..++.+. -...+|....+.+ .+. .+++++
T Consensus 214 ~~I~sv~F--Hp~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~-----l~~fPi~~a~f~p--------~G~~~i~~s~ 277 (514)
T KOG2055|consen 214 GGITSVQF--HPTAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIH-----LEKFPIQKAEFAP--------NGHSVIFTSG 277 (514)
T ss_pred CCceEEEe--cCCCceEEEecCCCcEEEEEec-CccChhheeee-----eccCccceeeecC--------CCceEEEecc
Confidence 34444555 4556689999999999999884 44333333321 2335777777655 344 788899
Q ss_pred cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCc
Q 020454 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (326)
Q Consensus 131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 210 (326)
....++.||+...... .++.........+..+.+++++++|+..|..|.|.+....+++.+..++-
T Consensus 278 rrky~ysyDle~ak~~------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-------- 343 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVT------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-------- 343 (514)
T ss_pred cceEEEEeeccccccc------cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee--------
Confidence 9999999998654311 11111111234678889999999999999999999999888887766543
Q ss_pred CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC-ceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET-PIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
+..|+.+.|+. +++.|++++.+|.|.+||++.. .+++.+....+ .-+++|.++++.++|+|+..|.|.|||.++
T Consensus 344 --eG~v~~~~fsS--dsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 344 --EGVVSDFTFSS--DSKELLASGGTGEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred --ccEEeeEEEec--CCcEEEEEcCCceEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 35688999984 6778999999999999999976 66777764322 346778889999999999999999999764
Q ss_pred ------CeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454 290 ------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 290 ------~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
.+++..+..- ...|++|.|+|+.++||.||.
T Consensus 419 ~~~s~~PkPik~~dNL-tt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 419 CFASTNPKPIKTVDNL-TTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred hhccCCCCchhhhhhh-heeeeeeeeCcchhhhhhhhh
Confidence 4667777663 789999999999999998874
No 152
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.84 E-value=4.3e-18 Score=139.13 Aligned_cols=265 Identities=15% Similarity=0.154 Sum_probs=181.7
Q ss_pred ecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCC
Q 020454 20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA 99 (326)
Q Consensus 20 ~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 99 (326)
-+.+..+.|||...+..... + +...+.++.+.|-+ .++-|++....|.+..|+++.+.+.+....++.
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~-v------k~sne~v~~a~FHP--td~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek--- 243 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGP-V------KTSNEVVFLATFHP--TDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK--- 243 (626)
T ss_pred CCCccccchhhchhhhccCc-c------eeccceEEEEEecc--CCCcEEEEeCCceEEEEEccCCceEEEeecccc---
Confidence 34456788999887621111 1 23344555555543 333467777779999999988887766655442
Q ss_pred CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEE
Q 020454 100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179 (326)
Q Consensus 100 ~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 179 (326)
.+...|.++.+.+ ++.++++.++|.|.||+..... ..+.-. .|++.|.++..-.+|.+| +
T Consensus 244 -~ekk~Vl~v~F~e---------ngdviTgDS~G~i~Iw~~~~~~--------~~k~~~-aH~ggv~~L~~lr~Gtll-S 303 (626)
T KOG2106|consen 244 -REKKFVLCVTFLE---------NGDVITGDSGGNILIWSKGTNR--------ISKQVH-AHDGGVFSLCMLRDGTLL-S 303 (626)
T ss_pred -ccceEEEEEEEcC---------CCCEEeecCCceEEEEeCCCce--------EEeEee-ecCCceEEEEEecCccEe-e
Confidence 2336788888644 5679999999999999964332 222222 578899999999888876 4
Q ss_pred ecCCCeEEEEECCCce-----------eeee-ecCCCC----------------CC---CCcCCCCceeeeEEeecCCCc
Q 020454 180 GGKGVEVNVWDLDKCE-----------KIWT-AKPPPK----------------NS---LGIFTPTWFTSAAFLSIDDHR 228 (326)
Q Consensus 180 g~~d~~i~iwd~~~~~-----------~~~~-~~~~~~----------------~~---~~~~~~~~v~~~~~~p~~~~~ 228 (326)
|++|..|..||-.-.+ .+.. +.+... .. ....+....-.++.+|.+ +
T Consensus 304 GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~--~ 381 (626)
T KOG2106|consen 304 GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK--N 381 (626)
T ss_pred cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh--h
Confidence 9999999999932111 0000 111100 00 000111223355667743 4
Q ss_pred EEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEE
Q 020454 229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIA 308 (326)
Q Consensus 229 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~ 308 (326)
++++++.|+.+++|+ . .+++.+.... .+..++.|+|.| .++.|+..|...+.|.++..++. +... ..+++.++
T Consensus 382 q~~T~gqdk~v~lW~--~-~k~~wt~~~~-d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~~d-~~~ls~v~ 454 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWN--D-HKLEWTKIIE-DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IHTD-NEQLSVVR 454 (626)
T ss_pred heeeccCcceEEEcc--C-CceeEEEEec-CceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EEec-CCceEEEE
Confidence 899999999999999 2 3566666544 778899999999 99999999999999999855554 3333 77999999
Q ss_pred ECCCCCEEEEeccCccC
Q 020454 309 RHPTLPIIASCGFLEAA 325 (326)
Q Consensus 309 ~~p~~~~l~s~s~D~~~ 325 (326)
|+|+|.+||.||.|+.+
T Consensus 455 ysp~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 455 YSPDGAFLAVGSHDNHI 471 (626)
T ss_pred EcCCCCEEEEecCCCeE
Confidence 99999999999999853
No 153
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.5e-18 Score=134.21 Aligned_cols=245 Identities=11% Similarity=0.055 Sum_probs=159.3
Q ss_pred CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (326)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~ 128 (326)
.+...+..++|. +++++|++++.|++|++|++..-+... .+.+... .+-+..+.+.+.+ + ....+++
T Consensus 84 gH~~~vt~~~Fs--SdGK~lat~~~Dr~Ir~w~~~DF~~~e-Hr~~R~n---ve~dhpT~V~Fap-D------c~s~vv~ 150 (420)
T KOG2096|consen 84 GHKKEVTDVAFS--SDGKKLATISGDRSIRLWDVRDFENKE-HRCIRQN---VEYDHPTRVVFAP-D------CKSVVVS 150 (420)
T ss_pred ccCCceeeeEEc--CCCceeEEEeCCceEEEEecchhhhhh-hhHhhcc---ccCCCceEEEECC-C------cceEEEE
Confidence 455566666664 567799999999999999986422111 1110000 1112233344322 1 2345666
Q ss_pred EecCCcEEEEEccccccccccccceEEEEE-----ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCC
Q 020454 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWN-----VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (326)
Q Consensus 129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~ 203 (326)
+....++++|.+..... +....+..-|+ -.+.-.+..+-...++++|++++.|..|.+|+++ ++.+..+...
T Consensus 151 ~~~g~~l~vyk~~K~~d--G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn 227 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTD--GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN 227 (420)
T ss_pred EccCCEEEEEEeeeccc--CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence 77778899998876543 22222222333 2233456667777778999999999999999998 7766654432
Q ss_pred CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-------CceeEEeecCCceEEEEecCCCCeEEEE
Q 020454 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-------RPVMSFDFRETPIKAVAEEPDSFNIYIG 276 (326)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~i~~v~~s~~~~~l~~g 276 (326)
... -+..+.+| +|+++++++.--.|++|.+--++ ..+.++++|.+.|..++|+|+.+.+++.
T Consensus 228 q~~---------n~~aavSP--~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 228 QSS---------NYDAAVSP--DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred ccc---------ccceeeCC--CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 211 23446777 78899999999999999964221 1356788999999999999999999999
Q ss_pred cCCCcEEEEECCC-------CeEEEEEcc--e-ecceEEEEEECCCCCEEEEec
Q 020454 277 NGSGDLASVDIRT-------GKLLGCFIG--K-CSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 277 ~~dg~v~iwd~~~-------~~~~~~~~~--~-~~~~v~~l~~~p~~~~l~s~s 320 (326)
+.||++++||..- .+.++.... | -.+.-..|+++|.++.||...
T Consensus 297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~ 350 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF 350 (420)
T ss_pred ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec
Confidence 9999999999752 223333211 1 012233789999999887653
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=3.2e-19 Score=145.39 Aligned_cols=262 Identities=9% Similarity=0.068 Sum_probs=182.4
Q ss_pred ecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe--cCCcEEEEeccccceeeeecccCCC
Q 020454 20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR--KNGLTDILNPLNGDLRVAISNAGDS 97 (326)
Q Consensus 20 ~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~dg~i~i~~~~~~~~~~~~~~~~~~ 97 (326)
++....+++||...- .+.. ++..+..+-.+..++|..... |++++ .|..|++|.- .++ ..++......
T Consensus 8 aS~gd~~kl~D~s~~-~~~~----~~~~~t~~pg~~s~~w~~~n~---lvvas~~gdk~~~~~~K-~g~-~~~Vp~~~k~ 77 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDL-ETKS----EYVHQTAEPGDFSFNWQRRNF---LVVASMAGDKVMRIKEK-DGK-TPEVPRVRKL 77 (673)
T ss_pred eccCCceEEeecccc-cCcc----ccccCCCCCcceeeeccccce---EEEeecCCceeEEEecc-cCC-CCccceeecc
Confidence 333447999998866 2323 333334444456666654433 55554 4667888865 333 2233222111
Q ss_pred CCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEE
Q 020454 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS 177 (326)
Q Consensus 98 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 177 (326)
.++ .-.|+.... ..-++++++..+.|+|||+.... +..+-..+...|+++.++....||
T Consensus 78 ---~gd-~~~Cv~~~s--------~S~y~~sgG~~~~Vkiwdl~~kl---------~hr~lkdh~stvt~v~YN~~Deyi 136 (673)
T KOG4378|consen 78 ---TGD-NAFCVACAS--------QSLYEISGGQSGCVKIWDLRAKL---------IHRFLKDHQSTVTYVDYNNTDEYI 136 (673)
T ss_pred ---ccc-hHHHHhhhh--------cceeeeccCcCceeeehhhHHHH---------HhhhccCCcceeEEEEecCCccee
Confidence 111 112222211 44689999999999999987432 222223456789999999999999
Q ss_pred EEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE-ee
Q 020454 178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DF 256 (326)
Q Consensus 178 ~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~ 256 (326)
|+++..|.|.|..+.++.....+..... ..|.-+.|+|... .+|.+++.+|.|.+||+... .|...+ +.
T Consensus 137 Asvs~gGdiiih~~~t~~~tt~f~~~sg--------qsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~-sp~~~~~~~ 206 (673)
T KOG4378|consen 137 ASVSDGGDIIIHGTKTKQKTTTFTIDSG--------QSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGM-SPIFHASEA 206 (673)
T ss_pred EEeccCCcEEEEecccCccccceecCCC--------CeEEEeecccccc-eeeEeeccCCeEEEEeccCC-Ccccchhhh
Confidence 9999999999999988776554433222 2366788998743 48889999999999999976 555544 46
Q ss_pred cCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 257 RETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 257 ~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
|..+...|+|+|.. ..|++-+.|..|.+||++..+....+.. ..+...++|.++|.+|+.|..-|.
T Consensus 207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~Plstvaf~~~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY--SHPLSTVAFSECGTYLCAGNSKGE 273 (673)
T ss_pred ccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--cCCcceeeecCCceEEEeecCCce
Confidence 88999999999975 5666889999999999998777766662 569999999999999999987764
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=4.6e-19 Score=142.94 Aligned_cols=242 Identities=15% Similarity=0.151 Sum_probs=170.4
Q ss_pred ceEEEEEeeeCCCCCeEEEEecCCcEEEEecc-ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (326)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~ 130 (326)
..+.++.|-+..+-+++++|...|.|-+||+. +++-...+..+ ..|.++|.++.+.+. +...+++.+
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-----~~hs~~Vs~l~F~P~-------n~s~i~ssS 254 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-----TPHSGPVSGLKFSPA-------NTSQIYSSS 254 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-----ccCCccccceEecCC-------Chhheeeec
Confidence 34556667666666799999999999999994 22222222222 266689999987663 457899999
Q ss_pred cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCcee-eeeecCCCCCCCC
Q 020454 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLG 209 (326)
Q Consensus 131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~ 209 (326)
.||+|++-|++..... .+...+ .....+..+.++.+...++.+..=|...+||++++.. .+.+.-|.
T Consensus 255 yDGtiR~~D~~~~i~e------~v~s~~-~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~----- 322 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISE------EVLSLD-TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK----- 322 (498)
T ss_pred cCceeeeeeecchhhH------HHhhcC-ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh-----
Confidence 9999999998764321 110000 1123466788888887777887778999999997654 33333332
Q ss_pred cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC--C-ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--R-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (326)
Q Consensus 210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~--~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd 286 (326)
..|++++++|- ...+|++++.|++++|||+|... . |+.....|...|.+..|||.+-.|++.+.|..|+|||
T Consensus 323 ----kKI~sv~~NP~-~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 323 ----KKITSVALNPV-CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred ----cccceeecCCC-CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 46889999997 45599999999999999998531 2 3445557889999999999987899999999999999
Q ss_pred CC----CCeEEEEEcceec--c--eEEEEEECCCCCEEEEeccC
Q 020454 287 IR----TGKLLGCFIGKCS--G--SIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 287 ~~----~~~~~~~~~~~~~--~--~v~~l~~~p~~~~l~s~s~D 322 (326)
.. ...++..+...+. . .....+|.|+..+|+.|-+-
T Consensus 398 ss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~ 441 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP 441 (498)
T ss_pred cccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC
Confidence 83 3344444431101 1 23355799999998887543
No 156
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=4.8e-19 Score=148.34 Aligned_cols=249 Identities=14% Similarity=0.175 Sum_probs=165.1
Q ss_pred EEEeeeC-CCCCeEEEEecCCcEEEEecccccee-eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC
Q 020454 56 AASIDDS-QNDPLLAVARKNGLTDILNPLNGDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (326)
Q Consensus 56 ~~~~~~~-~~~~~l~~g~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g 133 (326)
+..|... ....+|+++..||.|.++|...-.+. ++-+... ...|.+.|..+.+.+ .+..|++++.|.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~---~~aH~nAifDl~wap--------ge~~lVsasGDs 122 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKK---PLAHKNAIFDLKWAP--------GESLLVSASGDS 122 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcc---cccccceeEeeccCC--------CceeEEEccCCc
Confidence 3444432 33457999999999999998654443 1111111 136778999999877 557899999999
Q ss_pred cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCce---------eeeeecCC
Q 020454 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCE---------KIWTAKPP 203 (326)
Q Consensus 134 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~---------~~~~~~~~ 203 (326)
++++||++..... + .+ ..+.|...+.+++|.|.. ..|++|+.||.|.|||++-.. .+....+.
T Consensus 123 T~r~Wdvk~s~l~-----G-~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 123 TIRPWDVKTSRLV-----G-GR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred eeeeeeeccceee-----c-ce-eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence 9999998865431 1 11 345667889999999976 789999999999999997432 01100100
Q ss_pred ---CCCCCC------cCC----CCceeeeEEeecCCCcEEEEEeC-CCeEEEEeCCCCCC-----ce--eEEeec---CC
Q 020454 204 ---PKNSLG------IFT----PTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRR-----PV--MSFDFR---ET 259 (326)
Q Consensus 204 ---~~~~~~------~~~----~~~v~~~~~~p~~~~~~l~~~~~-dg~v~iwd~~~~~~-----~~--~~~~~~---~~ 259 (326)
+...+. ... ...|+.+.|- |...||+++. |+.|++||+|.... +. ..+..+ ..
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk---De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~ 272 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFK---DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSV 272 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEEe---ccceeeeccCCCcceEEEeecccccccccCCCcccCccCccccee
Confidence 000000 001 1246666664 4458998887 99999999996522 22 222222 23
Q ss_pred ceEEEEecCCCCeEEEEcCCCcEEEEECCCC--eEEEEEcceecceEE-EEEECCCCCEEEEeccCccC
Q 020454 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTG--KLLGCFIGKCSGSIR-SIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~--~~~~~~~~~~~~~v~-~l~~~p~~~~l~s~s~D~~~ 325 (326)
.++++.....|.+|++.+.|+.|++||+.+. .++..+.++....++ .-..+|++.+|++|+.|+.|
T Consensus 273 G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~a 341 (720)
T KOG0321|consen 273 GQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQA 341 (720)
T ss_pred eeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcce
Confidence 5777788777999999999999999999864 345555554222222 12357999999999999876
No 157
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=5.5e-19 Score=134.75 Aligned_cols=231 Identities=16% Similarity=0.129 Sum_probs=156.7
Q ss_pred CCcEEEEeccccc--eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC-------CcEEEEEccccc
Q 020454 74 NGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-------GKASMRSIEVTK 144 (326)
Q Consensus 74 dg~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~-------g~v~i~~~~~~~ 144 (326)
|+.|.+.++..+. +...... .+-+.|..++..+. +...|.++..+ -.+.||.+....
T Consensus 39 dNqVhll~~d~e~s~l~skvf~-------h~agEvw~las~P~-------d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~ 104 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFF-------HHAGEVWDLASSPF-------DQRILATVYNDTSDSGVLTGAAIWQIPEPL 104 (370)
T ss_pred cceeEEEEecCccchhhhhhhh-------cCCcceehhhcCCC-------CCceEEEEEeccCCCcceeeEEEEeccccc
Confidence 4777777765433 2222221 33477877775441 23344555432 235788877543
Q ss_pred ccc-ccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCcee-eeeecCCCCCCCCcCCCCceeeeEEe
Q 020454 145 VSA-ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFL 222 (326)
Q Consensus 145 ~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (326)
..+ ......+...+...-+.|.|+.|.|++..+++- .|+.|.+|++..... +..+..... .......++-+|+
T Consensus 105 ~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~vaev~ss~s----~e~~~~ftsg~Ws 179 (370)
T KOG1007|consen 105 GQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLSSES----AEMRHSFTSGAWS 179 (370)
T ss_pred CccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe-ccCceEEEEcccCcchheeeccccc----ccccceecccccC
Confidence 221 112234444444445689999999999888765 488999999987655 322222111 1122346677999
Q ss_pred ecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCC-CeEEEEEccee
Q 020454 223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRT-GKLLGCFIGKC 300 (326)
Q Consensus 223 p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~-~~~~~~~~~~~ 300 (326)
|..+++.+++.+ |+++..||+|+..+....-..|...+..+.|+|+- .+|++++.||.|+|||.+. ..+++.+.+|
T Consensus 180 pHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H- 257 (370)
T KOG1007|consen 180 PHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH- 257 (370)
T ss_pred CCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC-
Confidence 977887766654 89999999998854333334688889999999985 4667999999999999985 4578889998
Q ss_pred cceEEEEEECC-CCCEEEEeccCccC
Q 020454 301 SGSIRSIARHP-TLPIIASCGFLEAA 325 (326)
Q Consensus 301 ~~~v~~l~~~p-~~~~l~s~s~D~~~ 325 (326)
...|+++.|+| ..++|.|+|.|-.+
T Consensus 258 sHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 258 SHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred ceEEEEEEecCccceEEEecCCCcee
Confidence 99999999998 56789999999754
No 158
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=4.7e-18 Score=143.73 Aligned_cols=287 Identities=11% Similarity=0.075 Sum_probs=187.3
Q ss_pred CCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCC-CCCeEEEEecCCcEEEEeccccceee
Q 020454 11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRV 89 (326)
Q Consensus 11 ~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~i~~~~~~~~~~ 89 (326)
.|.+..+++.+..-.|.+||..+. .+.... +.+...+.+..+...+ ...++++|+.||.|.+|.++...+..
T Consensus 21 sw~~~~~vafGa~~~Iav~dp~k~-----~i~t~l--~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~ 93 (764)
T KOG1063|consen 21 SWGPGGLVAFGAGPAIAVADPEKI-----LIVTTL--DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIK 93 (764)
T ss_pred cccccceEEecCCceEEEeCcccc-----eeEEec--cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEE
Confidence 344566777888888999997754 232233 3444444455554322 23379999999999999998555544
Q ss_pred eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEcccccc-----------------------
Q 020454 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKV----------------------- 145 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~----------------------- 145 (326)
.+.. +.+...+.++.- .....++ ..|+.+++|+.+..+.
T Consensus 94 i~~~------~g~~~~~~cv~a-----------~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~ 156 (764)
T KOG1063|consen 94 IYTI------QGHCKECVCVVA-----------RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKN 156 (764)
T ss_pred EEee------cCcceeEEEEEe-----------eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhcc
Confidence 4443 234456665552 1233333 7899999999855441
Q ss_pred ------ccccccceEEEEEcc------------CCCceEEEEEcCCC---CEEEEecCCCeEEEEECCCce---------
Q 020454 146 ------SAESSCSTVKSWNVC------------ASGTIAFSKVDISE---KFSLFGGKGVEVNVWDLDKCE--------- 195 (326)
Q Consensus 146 ------~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~---~~l~sg~~d~~i~iwd~~~~~--------- 195 (326)
+.+..+..+.++.-. |..-|.+++|...+ -+||+++.|..||||.+.-..
T Consensus 157 ~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~ 236 (764)
T KOG1063|consen 157 NKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED 236 (764)
T ss_pred CCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc
Confidence 111222222222211 22336677776543 488999999999999986322
Q ss_pred --------eeeeecCC-----CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-ceeE-----Eee
Q 020454 196 --------KIWTAKPP-----PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMS-----FDF 256 (326)
Q Consensus 196 --------~~~~~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~-----~~~ 256 (326)
+++...++ ..+.+.+.|..||+++.|+| .+..|++++.|.++.+|....... -+.. ..+
T Consensus 237 ~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p--~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg 314 (764)
T KOG1063|consen 237 SLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP--EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG 314 (764)
T ss_pred ccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc--chhhheecccCcceEEEecCCccceEEEEEEeecccc
Confidence 11111100 11223345789999999998 455899999999999999775411 1111 212
Q ss_pred cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC---eEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG---KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 257 ~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~---~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
.........|+|+++.+++-+..|..++|..... .+...+.|| .+.|++++|+|.|.+|.|.|.|-+
T Consensus 315 ~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH-~~~V~dv~W~psGeflLsvs~DQT 384 (764)
T KOG1063|consen 315 SAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH-VDGVKDVDWDPSGEFLLSVSLDQT 384 (764)
T ss_pred cccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc-cccceeeeecCCCCEEEEeccccc
Confidence 3345788899999999999999999999983332 233446688 999999999999999999999975
No 159
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.3e-18 Score=127.51 Aligned_cols=227 Identities=19% Similarity=0.130 Sum_probs=160.6
Q ss_pred eeCCCCCeEEEEecCCcEEEEeccccceeee---ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEE
Q 020454 60 DDSQNDPLLAVARKNGLTDILNPLNGDLRVA---ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKAS 136 (326)
Q Consensus 60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~ 136 (326)
..++..++|++|..+|.|-++.+..-..... -+.. .-+.+.|++++..+.+ .+..|++++. |.|+
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~-iv~eqahdgpiy~~~f----------~d~~Lls~gd-G~V~ 84 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLK-IVPEQAHDGPIYYLAF----------HDDFLLSGGD-GLVY 84 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcc-eeeccccCCCeeeeee----------ehhheeeccC-ceEE
Confidence 3456667899999999999998852111000 0000 0001578899999987 4456776665 9999
Q ss_pred EEEccccccccccccceEEEEEccCC--------CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454 137 MRSIEVTKVSAESSCSTVKSWNVCAS--------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (326)
Q Consensus 137 i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 208 (326)
-|..+..... .++-++|+...+ ..|+.|...|+.+-++.++.|+.++.||+++++....+++|.
T Consensus 85 gw~W~E~~es----~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt---- 156 (325)
T KOG0649|consen 85 GWEWNEEEES----LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT---- 156 (325)
T ss_pred Eeeehhhhhh----ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc----
Confidence 9988764421 334455654332 358999999998888888899999999999999999999987
Q ss_pred CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec----------CCceEEEEecCCCCeEEEEcC
Q 020454 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR----------ETPIKAVAEEPDSFNIYIGNG 278 (326)
Q Consensus 209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----------~~~i~~v~~s~~~~~l~~g~~ 278 (326)
.+|.++.--.. ++ .+++|+.||++|+||++++ +.+..+... ...|-+++- +...+++|+.
T Consensus 157 -----DYvH~vv~R~~-~~-qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG 226 (325)
T KOG0649|consen 157 -----DYVHSVVGRNA-NG-QILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG 226 (325)
T ss_pred -----ceeeeeeeccc-Cc-ceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC
Confidence 56777765322 33 7999999999999999987 556655421 224555554 5667887654
Q ss_pred CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 279 dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
..+.+|+++..++...|+ ...+|..+.|..+ .++++|.
T Consensus 227 -p~lslwhLrsse~t~vfp--ipa~v~~v~F~~d--~vl~~G~ 264 (325)
T KOG0649|consen 227 -PKLSLWHLRSSESTCVFP--IPARVHLVDFVDD--CVLIGGE 264 (325)
T ss_pred -CceeEEeccCCCceEEEe--cccceeEeeeecc--eEEEecc
Confidence 479999999999988887 3678888999544 4555553
No 160
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=6e-19 Score=132.86 Aligned_cols=292 Identities=14% Similarity=0.107 Sum_probs=181.2
Q ss_pred CcccccCCCCCCC-eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEE
Q 020454 2 PRTTTLECPGCPP-LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL 80 (326)
Q Consensus 2 ~~~~~~~~~~~~~-~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~ 80 (326)
|....+.|.+-.. -||.+|++.|.|++|.+.+. +-...|.. .....+..+- ...+..|.+-..|+.+.+|
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~-----r~~~~~r~-~g~~~it~lq---~~p~d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTE-----RDLPLIRL-FGRLFITNLQ---SIPNDSLDTQGRDPLLILW 82 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecC-----ccchhhhh-hccceeecee---ecCCcchhhcCCCceEEEE
Confidence 3444555555444 67999999999999999976 22222221 1222333222 2222458889999999999
Q ss_pred eccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC-cEEEEEcccccc---ccccccceEEE
Q 020454 81 NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG-KASMRSIEVTKV---SAESSCSTVKS 156 (326)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g-~v~i~~~~~~~~---~~~~~~~~~~~ 156 (326)
++..+.++..-.. .+.++.+.+ ..++..+... ....+.-+.... ..+.....+++
T Consensus 83 ~ia~s~~i~i~Si-----------~~nslgFCr----------fSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i 141 (323)
T KOG0322|consen 83 TIAYSAFISIHSI-----------VVNSLGFCR----------FSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQI 141 (323)
T ss_pred EccCcceEEEeee-----------ecccccccc----------ceeccCCCcchhheecCCcccchhhhhccCccceeEc
Confidence 9976665433221 222233211 0111111111 111111000000 00111112222
Q ss_pred EEc---cCCCceEEEEEcC-CC--CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCc-CCCCceeeeEEeecCCCcE
Q 020454 157 WNV---CASGTIAFSKVDI-SE--KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDDHRK 229 (326)
Q Consensus 157 ~~~---~~~~~v~~~~~~~-~~--~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~~ 229 (326)
-+. ...+.+.|.++.. .+ -+++.|-++|.+.+||+.++..+..++...+..... .+...|.++.|.+..+ .
T Consensus 142 ~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~--r 219 (323)
T KOG0322|consen 142 ADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD--R 219 (323)
T ss_pred cCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc--C
Confidence 221 1124566776433 23 356778889999999999986665555443333222 2456788999986433 3
Q ss_pred EEEEeCCCeEEEEeCCCC--CCce-eEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEE
Q 020454 230 FVAGTNDHQVRLYDTSAQ--RRPV-MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS 306 (326)
Q Consensus 230 l~~~~~dg~v~iwd~~~~--~~~~-~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~ 306 (326)
=++|+.+..+..|.+... .-++ .+.....-.+..+.+-||++.+|+++.|+.|+||+.++..++..++-| .+.|++
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-sagvn~ 298 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-SAGVNA 298 (323)
T ss_pred CcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh-hcceeE
Confidence 477888888999987632 1112 233445567888999999999999999999999999999999999998 999999
Q ss_pred EEECCCCCEEEEeccCccCC
Q 020454 307 IARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 307 l~~~p~~~~l~s~s~D~~~~ 326 (326)
++|+|+.+++|++|.|+.+|
T Consensus 299 vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARIS 318 (323)
T ss_pred EEeCCCCchhhhccCCceEE
Confidence 99999999999999998764
No 161
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=8.4e-20 Score=148.99 Aligned_cols=183 Identities=17% Similarity=0.164 Sum_probs=142.5
Q ss_pred eEEEEecCCcEEEEEccccccccccccceEEEEEc-cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCC
Q 020454 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (326)
Q Consensus 125 ~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~ 203 (326)
.-+-.+..|.|+|||+...... ..+.-.+. ....-|+++...|+++.|++|++-.++.|||+....+..+..-.
T Consensus 432 rhVyTgGkgcVKVWdis~pg~k-----~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt 506 (705)
T KOG0639|consen 432 RHVYTGGKGCVKVWDISQPGNK-----SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT 506 (705)
T ss_pred ceeEecCCCeEEEeeccCCCCC-----CccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC
Confidence 3444445677899998754311 12222221 13456999999999999999999999999999876553332221
Q ss_pred CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEE
Q 020454 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (326)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~ 283 (326)
.. ....++++.+| |.++.+++..||.|.|||+++. ..+..|++|...+.||.++++|..|.+|+-|++|+
T Consensus 507 ss-------apaCyALa~sp--DakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtklWTGGlDntvR 576 (705)
T KOG0639|consen 507 SS-------APACYALAISP--DAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVR 576 (705)
T ss_pred Cc-------chhhhhhhcCC--ccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCceeecCCCcccee
Confidence 11 02345667787 5668999999999999999977 67899999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
.||+++++.+.+.. ....|.+|..+|++.+|+.|-..+.
T Consensus 577 cWDlregrqlqqhd--F~SQIfSLg~cP~~dWlavGMens~ 615 (705)
T KOG0639|consen 577 CWDLREGRQLQQHD--FSSQIFSLGYCPTGDWLAVGMENSN 615 (705)
T ss_pred ehhhhhhhhhhhhh--hhhhheecccCCCccceeeecccCc
Confidence 99999999887766 3788999999999999999876654
No 162
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4.2e-18 Score=131.52 Aligned_cols=261 Identities=14% Similarity=0.126 Sum_probs=185.1
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..|+.|-.+|.|-+||..+. .+...++.+-++.. ++ +|+..+..|++++.|..|.+||+..|..+..+...
T Consensus 36 ~~lAvGc~nG~vvI~D~~T~-----~iar~lsaH~~pi~--sl--~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~ 106 (405)
T KOG1273|consen 36 DYLAVGCANGRVVIYDFDTF-----RIARMLSAHVRPIT--SL--CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD 106 (405)
T ss_pred ceeeeeccCCcEEEEEcccc-----chhhhhhcccccee--EE--EecCCCCEeeeecCCceeEEEeccCCCceeEEEcc
Confidence 44888999999999999987 34334444444433 33 45667779999999999999999999988777652
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCC----ceEEEEE
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG----TIAFSKV 170 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~ 170 (326)
.+|.+..+.+. ..++.+++-.+..-.+.++....+ ++......+ .-.+..|
T Consensus 107 ---------spv~~~q~hp~-------k~n~~va~~~~~sp~vi~~s~~~h---------~~Lp~d~d~dln~sas~~~f 161 (405)
T KOG1273|consen 107 ---------SPVWGAQWHPR-------KRNKCVATIMEESPVVIDFSDPKH---------SVLPKDDDGDLNSSASHGVF 161 (405)
T ss_pred ---------Cccceeeeccc-------cCCeEEEEEecCCcEEEEecCCce---------eeccCCCccccccccccccc
Confidence 67887776553 346666666666566666543221 111111111 1223358
Q ss_pred cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC--
Q 020454 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-- 248 (326)
Q Consensus 171 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-- 248 (326)
++.|+++++|...|.+.++|..+.+++..++-.. ...|..+.++. .++.|+.-+.|..||.|+++.-.
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits--------~~~IK~I~~s~--~g~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS--------VQAIKQIIVSR--KGRFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchheeeeeeeech--------heeeeEEEEec--cCcEEEEecCCceEEEEehhhhccc
Confidence 8899999999999999999999988776655432 12366777775 56689999999999999977211
Q ss_pred ----C--ceeEEe--ecCCceEEEEecCCCCeEEEEcC-CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454 249 ----R--PVMSFD--FRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 249 ----~--~~~~~~--~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
. +.++++ ...-+-.+++|+.+|.|+++|+. ...++||.-..|.+++.+.|........+.|+|-.++|++-
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 1 112221 12335567899999999997775 45799999999999999998722567889999999988887
No 163
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=2.3e-17 Score=142.36 Aligned_cols=255 Identities=14% Similarity=0.093 Sum_probs=173.3
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..++.|..+|.|-+||+..+ ...+....+.....+.+.++++.|.......-+++++.||.|..|+++.-.........
T Consensus 256 ~ll~gG~y~GqV~lWD~~~~-~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~ 334 (555)
T KOG1587|consen 256 NLLAGGCYNGQVVLWDLRKG-SDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLL 334 (555)
T ss_pred ceEEeeccCceEEEEEccCC-CCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccc
Confidence 77999999999999999977 33222333445567788888888876655556999999999999987532221111110
Q ss_pred CCCC----CCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE
Q 020454 95 GDSG----AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (326)
Q Consensus 95 ~~~~----~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 170 (326)
.... .......+..+.+.. .+...+++|++.|.|+.-.-........ ..-....--..+.++|..+.+
T Consensus 335 ~~~~~~~~~~~~~~~~t~~~F~~-------~~p~~FiVGTe~G~v~~~~r~g~~~~~~-~~~~~~~~~~~h~g~v~~v~~ 406 (555)
T KOG1587|consen 335 ESKKHKGQQSSKAVGATSLKFEP-------TDPNHFIVGTEEGKVYKGCRKGYTPAPE-VSYKGHSTFITHIGPVYAVSR 406 (555)
T ss_pred ccccccccccccccceeeEeecc-------CCCceEEEEcCCcEEEEEeccCCccccc-ccccccccccccCcceEeeec
Confidence 0000 001223455566433 2456899999999987633222111000 000111111235678999999
Q ss_pred cCCC-CEEEEecCCCeEEEEECC-CceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC-C
Q 020454 171 DISE-KFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-Q 247 (326)
Q Consensus 171 ~~~~-~~l~sg~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~-~ 247 (326)
+|=. +++++++ |.+++||... ...+++..... +..|++++|+|.. ...|+++..||.+.+||+.. .
T Consensus 407 nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~---------~~~v~~vaWSptr-pavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 407 NPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSS---------PDYVTDVAWSPTR-PAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred CCCccceeeeec-cceeEeccccCCCCcchhhhhc---------cceeeeeEEcCcC-ceEEEEEcCCCceehhhhhccc
Confidence 9976 5556665 9999999987 55666654442 3569999999974 45899999999999999773 3
Q ss_pred CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 248 ~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
..|+.+........+.+.|++.|+.|++|+..|.+++|++..
T Consensus 476 ~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 476 EEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 457777777777888889999999999999999999999963
No 164
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=1.6e-16 Score=125.28 Aligned_cols=223 Identities=20% Similarity=0.229 Sum_probs=153.9
Q ss_pred CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC--cEEEEE
Q 020454 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG--KASMRS 139 (326)
Q Consensus 62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g--~v~i~~ 139 (326)
.++...|.+|+.|| -++|+.+.-.. .+.. ..+.-.|.-+-+ ....++..+.+. .+++++
T Consensus 14 Nqd~~~lsvGs~~G-yk~~~~~~~~k--~~~~------~~~~~~IvEmLF----------SSSLvaiV~~~qpr~Lkv~~ 74 (391)
T KOG2110|consen 14 NQDSTLLSVGSKDG-YKIFSCSPFEK--CFSK------DTEGVSIVEMLF----------SSSLVAIVSIKQPRKLKVVH 74 (391)
T ss_pred ccceeEEEccCCCc-eeEEecCchHH--hhcc------cCCCeEEEEeec----------ccceeEEEecCCCceEEEEE
Confidence 44445688899988 47887653221 1111 122234444443 234555544433 366666
Q ss_pred ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454 140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (326)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (326)
+.... .+..... ..+|.++.++. +.|++.=.+ .|.|||+++.+.+.++...+.+. .. -+
T Consensus 75 ~Kk~~--------~ICe~~f--pt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~------~g--l~ 133 (391)
T KOG2110|consen 75 FKKKT--------TICEIFF--PTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNP------KG--LC 133 (391)
T ss_pred cccCc--------eEEEEec--CCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCc------cc--eE
Confidence 54432 3333332 56888888864 444444444 59999999999988876653332 22 33
Q ss_pred EEeecCCCcEEEEE--eCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCc-EEEEECCCCeEEEEE
Q 020454 220 AFLSIDDHRKFVAG--TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCF 296 (326)
Q Consensus 220 ~~~p~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~-v~iwd~~~~~~~~~~ 296 (326)
+++|+.++.+++-- ...|.|.+||..+. +++..+..|++.+-+++|+++|.+||++++.|+ ||||.+.+|+.+++|
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF 212 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence 55665566677753 34789999999987 789999999999999999999999999999998 899999999999999
Q ss_pred cce-ecceEEEEEECCCCCEEEEeccCccC
Q 020454 297 IGK-CSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 297 ~~~-~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+-. ....|.+|+|+|++++|++.|.-+++
T Consensus 213 RRG~~~~~IySL~Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPDSQFLAASSNTETV 242 (391)
T ss_pred eCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence 732 23468899999999999998876653
No 165
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=1.4e-17 Score=127.34 Aligned_cols=280 Identities=14% Similarity=0.094 Sum_probs=183.4
Q ss_pred eeeeeec----CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCC--CCeEEEEecCCcEEEEecccccee
Q 020454 15 LRALTFD----SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN--DPLLAVARKNGLTDILNPLNGDLR 88 (326)
Q Consensus 15 ~~l~~~~----~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~dg~i~i~~~~~~~~~ 88 (326)
.||+.|+ ....|.+..+... .+.......|..+ --...+.|.+++. .+-|+ ++.+..+|+|.+...+..
T Consensus 60 ~rla~gS~~Ee~~Nkvqiv~ld~~-s~e~~~~a~fd~~---YP~tK~~wiPd~~g~~pdlL-ATs~D~LRlWri~~ee~~ 134 (364)
T KOG0290|consen 60 FRLAVGSFIEEYNNKVQIVQLDED-SGELVEDANFDHP---YPVTKLMWIPDSKGVYPDLL-ATSSDFLRLWRIGDEESR 134 (364)
T ss_pred eeEEEeeeccccCCeeEEEEEccC-CCceeccCCCCCC---CCccceEecCCccccCcchh-hcccCeEEEEeccCcCCc
Confidence 6666665 3456666665533 2222221122221 1222344444432 12122 344568999998633221
Q ss_pred eeec-ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEE
Q 020454 89 VAIS-NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (326)
Q Consensus 89 ~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 167 (326)
...+ .+..........+++++.+..- +.+++.+.+-|-+..|||++.. ..++++.--+.|..+|..
T Consensus 135 ~~~~~~L~~~kns~~~aPlTSFDWne~-------dp~~igtSSiDTTCTiWdie~~------~~~~vkTQLIAHDKEV~D 201 (364)
T KOG0290|consen 135 VELQSVLNNNKNSEFCAPLTSFDWNEV-------DPNLIGTSSIDTTCTIWDIETG------VSGTVKTQLIAHDKEVYD 201 (364)
T ss_pred eehhhhhccCcccccCCcccccccccC-------CcceeEeecccCeEEEEEEeec------cccceeeEEEecCcceeE
Confidence 1111 1111111234467777765431 4578999999999999998764 245677777788999999
Q ss_pred EEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-CeEEEEeCC
Q 020454 168 SKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-HQVRLYDTS 245 (326)
Q Consensus 168 ~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-g~v~iwd~~ 245 (326)
++|...+ +.||+.|.||.+|+||++..+-...+...+.. ......++|++. +.+++|+-..| ..|.|.|+|
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~------~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP------STPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC------CCcceeeccCcC-CchHHhhhhcCCceEEEEEec
Confidence 9999865 89999999999999999975533322222111 123456788775 55688876554 589999999
Q ss_pred CCCCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCC------eEEEEEcceecceEEEEEECC-CCCEEE
Q 020454 246 AQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTG------KLLGCFIGKCSGSIRSIARHP-TLPIIA 317 (326)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~------~~~~~~~~~~~~~v~~l~~~p-~~~~l~ 317 (326)
....++..++.|.+.|+.++|.|. ...|++++.|..+-+||+.+. .++..+. . .+.|+.|.|+| ....|+
T Consensus 275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a-~~EVNqi~Ws~~~~Dwia 352 (364)
T KOG0290|consen 275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-A-GGEVNQIQWSSSQPDWIA 352 (364)
T ss_pred CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-c-cceeeeeeecccCCCEEE
Confidence 887899999999999999999997 578889999999999999863 2333444 2 67999999996 556777
Q ss_pred Eecc
Q 020454 318 SCGF 321 (326)
Q Consensus 318 s~s~ 321 (326)
.|..
T Consensus 353 i~~~ 356 (364)
T KOG0290|consen 353 ICFG 356 (364)
T ss_pred EEec
Confidence 7653
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=3.6e-18 Score=141.31 Aligned_cols=213 Identities=20% Similarity=0.299 Sum_probs=153.4
Q ss_pred CCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec
Q 020454 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG 181 (326)
Q Consensus 102 ~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 181 (326)
+...|+.+.+-+ ....++++++||.+.+|.+............++..|+ .+.++|.|+.+.+++..+++|+
T Consensus 293 ~~d~ir~l~~~~--------sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 293 HDDCIRALAFHP--------SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred chhhhhhhhcCC--------CCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeec
Confidence 344555555433 5678999999999999999442222233445666676 3678999999999999999999
Q ss_pred CCCeEEEEECCCceeeeeec-CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-----------
Q 020454 182 KGVEVNVWDLDKCEKIWTAK-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR----------- 249 (326)
Q Consensus 182 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~----------- 249 (326)
.||+|+.|++....--+... .......-..+...|..+++++..+ .|++++.||++++|+......
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~ 441 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGY 441 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCccccCCccccCC
Confidence 99999999876322111100 0000000112335566888887544 799999999999999754311
Q ss_pred c--------------------------------eeEEee-------cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454 250 P--------------------------------VMSFDF-------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 250 ~--------------------------------~~~~~~-------~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~ 290 (326)
| +..+.. ....+..+.++|.+.+.+++..|+.|+++|..++
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 0 000000 0125677888899999999999999999999999
Q ss_pred eEEEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 291 ~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
++++....| ...++++++.|++.+|++++.|+.++
T Consensus 522 ~~l~s~~a~-~~svtslai~~ng~~l~s~s~d~sv~ 556 (577)
T KOG0642|consen 522 KILHSMVAH-KDSVTSLAIDPNGPYLMSGSHDGSVR 556 (577)
T ss_pred ccchheeec-cceecceeecCCCceEEeecCCceee
Confidence 999999998 99999999999999999999999764
No 167
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=3.1e-18 Score=132.50 Aligned_cols=203 Identities=13% Similarity=0.152 Sum_probs=152.4
Q ss_pred CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEe
Q 020454 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180 (326)
Q Consensus 101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 180 (326)
+|.+.|..++... ....+-+++.|.+.++|.++... .+..|. .+.+.|++++||+++.+++++
T Consensus 146 GHkDGiW~Vaa~~--------tqpi~gtASADhTA~iWs~Esg~--------CL~~Y~-GH~GSVNsikfh~s~~L~lTa 208 (481)
T KOG0300|consen 146 GHKDGIWHVAADS--------TQPICGTASADHTARIWSLESGA--------CLATYT-GHTGSVNSIKFHNSGLLLLTA 208 (481)
T ss_pred ccccceeeehhhc--------CCcceeecccccceeEEeecccc--------ceeeec-ccccceeeEEeccccceEEEc
Confidence 5566777776544 33477888999999999987644 333333 457889999999999999999
Q ss_pred cCCCeEEEEECC------Cce---------eeeeecCC--------CCCCCCc--------CCCCceeeeEEeecCCCcE
Q 020454 181 GKGVEVNVWDLD------KCE---------KIWTAKPP--------PKNSLGI--------FTPTWFTSAAFLSIDDHRK 229 (326)
Q Consensus 181 ~~d~~i~iwd~~------~~~---------~~~~~~~~--------~~~~~~~--------~~~~~v~~~~~~p~~~~~~ 229 (326)
+.|++.+||... ... .......+ ..+...+ .|...|.+..|.. .++.
T Consensus 209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~--gg~Q 286 (481)
T KOG0300|consen 209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA--GGQQ 286 (481)
T ss_pred cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc--Ccce
Confidence 999999999832 110 00000000 0000001 1233455666665 5678
Q ss_pred EEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEcceecceEEEEE
Q 020454 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIA 308 (326)
Q Consensus 230 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~ 308 (326)
+++++.|.+..+||+.++ .++..+.+|+...+.++-+|..+++++.+.|-+.++||++.. ..+..|+|| ...|++..
T Consensus 287 ~vTaSWDRTAnlwDVEtg-e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGH-tdtVTS~v 364 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETG-EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGH-TDTVTSVV 364 (481)
T ss_pred eeeeeccccceeeeeccC-ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccc-ccceeEEE
Confidence 999999999999999998 789999999999999999999999999999999999999843 346779998 99999999
Q ss_pred ECCCCCEEEEeccCccC
Q 020454 309 RHPTLPIIASCGFLEAA 325 (326)
Q Consensus 309 ~~p~~~~l~s~s~D~~~ 325 (326)
|.-+. .+++||.|+++
T Consensus 365 F~~dd-~vVSgSDDrTv 380 (481)
T KOG0300|consen 365 FNTDD-RVVSGSDDRTV 380 (481)
T ss_pred EecCC-ceeecCCCceE
Confidence 98765 58899999875
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.4e-18 Score=154.57 Aligned_cols=242 Identities=12% Similarity=0.076 Sum_probs=170.7
Q ss_pred eeeeecCcccEEEEEecCC-cCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 16 RALTFDSLGLIKVIEARGE-HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-|+.|.+||.|-+|+.... ..+...++.+...+ ...+.++.|.. ..+++||+|..||.|.|||+.+-+.-....
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h--~G~V~gLDfN~-~q~nlLASGa~~geI~iWDlnn~~tP~~~~-- 156 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKH--TGPVLGLDFNP-FQGNLLASGADDGEILIWDLNKPETPFTPG-- 156 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhccc--CCceeeeeccc-cCCceeeccCCCCcEEEeccCCcCCCCCCC--
Confidence 3777889999999998762 12222333344433 33444544432 234489999999999999997533222221
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.+.-...|.++.|-. + ....|++++.+|...|||++.+... +++-+......+..++|||+.
T Consensus 157 ----~~~~~~eI~~lsWNr-k------vqhILAS~s~sg~~~iWDlr~~~pi-------i~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 157 ----SQAPPSEIKCLSWNR-K------VSHILASGSPSGRAVIWDLRKKKPI-------IKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred ----CCCCcccceEeccch-h------hhHHhhccCCCCCceeccccCCCcc-------cccccCCCccceeeeeeCCCC
Confidence 122346788888643 2 3456888999999999999876532 222222222458899999987
Q ss_pred -CEEEEecCCCe---EEEEECCCc-eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454 175 -KFSLFGGKGVE---VNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (326)
Q Consensus 175 -~~l~sg~~d~~---i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~ 249 (326)
..|++++.|.. |.+||+|.. .++..+..|. ..|.++.|.+. |..++++++.|++|.+|+..++ +
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~---------~GilslsWc~~-D~~lllSsgkD~~ii~wN~~tg-E 287 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQ---------RGILSLSWCPQ-DPRLLLSSGKDNRIICWNPNTG-E 287 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCchhhhcccc---------cceeeeccCCC-CchhhhcccCCCCeeEecCCCc-e
Confidence 56666666543 999999864 3455555655 45778899986 4559999999999999999998 5
Q ss_pred ceeEEeecCCceEEEEecCCCC-eEEEEcCCCcEEEEECCCCe
Q 020454 250 PVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTGK 291 (326)
Q Consensus 250 ~~~~~~~~~~~i~~v~~s~~~~-~l~~g~~dg~v~iwd~~~~~ 291 (326)
.+.++.....++..+.|+|... .+++++-||.|.||.+....
T Consensus 288 vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 288 VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 6888888889999999999765 78899999999999998643
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.3e-17 Score=130.01 Aligned_cols=237 Identities=12% Similarity=0.127 Sum_probs=153.4
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-+++++=.+|.||++|..++ .+...+..+......+.+.-.+ ....+.+++.||+|++||++.......+...
T Consensus 41 ~~vav~lSngsv~lyd~~tg-----~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-----QLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccch-----hhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 56889999999999999886 4554555444444433343333 4446999999999999999866655554432
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEe----cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT----TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~----~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 170 (326)
. ....+..++..-. ..+.+.+++ .+-.+.+||++.... .++.|.-.|...|+++.|
T Consensus 114 ~-----~~~~~f~~ld~nc--------k~~ii~~GtE~~~s~A~v~lwDvR~~qq-------~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 114 Q-----QSGTPFICLDLNC--------KKNIIACGTELTRSDASVVLWDVRSEQQ-------LLRQLNESHNDDVTQLRF 173 (376)
T ss_pred C-----CCCCcceEeeccC--------cCCeEEeccccccCceEEEEEEeccccc-------hhhhhhhhccCcceeEEe
Confidence 1 1124566565421 223344443 456789999887652 477888888999999999
Q ss_pred cCCC-CEEEEecCCCeEEEEECCCcee---eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454 171 DISE-KFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (326)
Q Consensus 171 ~~~~-~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~ 246 (326)
||+. ++|++|+.||-|.+||+..... +...-+ +...|..+.|+...- +.+.+-+...+..+|++..
T Consensus 174 HP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN---------~~sSI~~igw~~~~y-krI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN---------HGSSIHLIGWLSKKY-KRIMCLTHMETFAIYELED 243 (376)
T ss_pred cCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc---------ccceeeeeeeecCCc-ceEEEEEccCceeEEEccC
Confidence 9976 8999999999999999975421 111111 113355555554211 1355555555566665543
Q ss_pred CC------------------------------------------------------------CceeEEee-cCCceEEEE
Q 020454 247 QR------------------------------------------------------------RPVMSFDF-RETPIKAVA 265 (326)
Q Consensus 247 ~~------------------------------------------------------------~~~~~~~~-~~~~i~~v~ 265 (326)
+. .++..+.+ |..-|+++.
T Consensus 244 ~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~ 323 (376)
T KOG1188|consen 244 GSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDIL 323 (376)
T ss_pred CChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHh
Confidence 21 11222222 444567777
Q ss_pred ecCCCCeEEEEcCCCcEEEEECC
Q 020454 266 EEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 266 ~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
|...+..+++|++||.+.+|...
T Consensus 324 ~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 324 FDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred hhcccceeeccCCCceEEEEecC
Confidence 87778899999999999999853
No 170
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.3e-17 Score=125.11 Aligned_cols=232 Identities=14% Similarity=0.064 Sum_probs=158.4
Q ss_pred EEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcE
Q 020454 56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA 135 (326)
Q Consensus 56 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v 135 (326)
+.|...+.-+.+||+|+.||.|.|||+.+...-..+. .|..+|.+++|.+ ++.+|++++.|..+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls--------aH~~pi~sl~WS~--------dgr~LltsS~D~si 89 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS--------AHVRPITSLCWSR--------DGRKLLTSSRDWSI 89 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh--------ccccceeEEEecC--------CCCEeeeecCCcee
Confidence 4444455667799999999999999998776543333 6668999999877 77899999999999
Q ss_pred EEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCC
Q 020454 136 SMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT 214 (326)
Q Consensus 136 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 214 (326)
.+||+.... .++..+ -..+|....|||.. +.+++.-.+..-.+-++..++...-......+. . .
T Consensus 90 ~lwDl~~gs--------~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl-n----~ 154 (405)
T KOG1273|consen 90 KLWDLLKGS--------PLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL-N----S 154 (405)
T ss_pred EEEeccCCC--------ceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc-c----c
Confidence 999986533 233333 36799999999965 333333333334444544322111111111110 0 0
Q ss_pred ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC-CceEEEEecCCCCeEEEEcCCCcEEEEECCC----
Q 020454 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT---- 289 (326)
Q Consensus 215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~---- 289 (326)
.-.+..|.+ .|+++++|+..|.+.+||..+. +++..++... ..|..+.++..|++|+.-+.|+.|+.|+++.
T Consensus 155 sas~~~fdr--~g~yIitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 155 SASHGVFDR--RGKYIITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred ccccccccC--CCCEEEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc
Confidence 111224554 6779999999999999999987 6788887665 7899999999999999999999999999873
Q ss_pred ---CeE--EEEEcce-ecceEEEEEECCCCCEEEEecc
Q 020454 290 ---GKL--LGCFIGK-CSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 290 ---~~~--~~~~~~~-~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
+++ .++++.- ....=.++.|+.+|.|++.++.
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~ 269 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA 269 (405)
T ss_pred CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc
Confidence 111 1222210 0223457788999999988873
No 171
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=1.4e-16 Score=137.61 Aligned_cols=277 Identities=14% Similarity=0.106 Sum_probs=180.3
Q ss_pred ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee--eeecccCCCCCCC
Q 020454 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--VAISNAGDSGAQP 101 (326)
Q Consensus 24 G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~--~~~~~~~~~~~~~ 101 (326)
+.+.||++... .. +.+... ....+.++.+... ...+++.|+.+|.|.+||+..+... ..+... ...
T Consensus 222 ~~~~vW~~~~p-~~-Pe~~~~-----~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~----~~s 289 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NT-PELVLE-----SPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL----EVS 289 (555)
T ss_pred ceEEEEecCCC-CC-ceEEEe-----cCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccc----ccc
Confidence 47889998865 22 223221 2222333444322 2336899999999999999866652 222211 125
Q ss_pred CCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEE---EEccCCCceEEEEEcCCC-CEE
Q 020454 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS---WNVCASGTIAFSKVDISE-KFS 177 (326)
Q Consensus 102 ~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~-~~l 177 (326)
|..++..+.+.... .+..+++++.||.|..|+++.........-..... -+......+++++|.+.. +.+
T Consensus 290 h~~~v~~vvW~~~~------~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~F 363 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNE------HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHF 363 (555)
T ss_pred CCcCeEEEEEeccC------CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceE
Confidence 66788877766532 23569999999999999887644321111111111 011123468899999865 778
Q ss_pred EEecCCCeEEEEECCCceee--eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe
Q 020454 178 LFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD 255 (326)
Q Consensus 178 ~sg~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 255 (326)
++|+.+|.|.-=+-...+.- ...+.+. ....+...|+++.++|-. .+.|++++ |-+|+||.......|+..+.
T Consensus 364 iVGTe~G~v~~~~r~g~~~~~~~~~~~~~---~~~~h~g~v~~v~~nPF~-~k~fls~g-DW~vriWs~~~~~~Pl~~~~ 438 (555)
T KOG1587|consen 364 IVGTEEGKVYKGCRKGYTPAPEVSYKGHS---TFITHIGPVYAVSRNPFY-PKNFLSVG-DWTVRIWSEDVIASPLLSLD 438 (555)
T ss_pred EEEcCCcEEEEEeccCCcccccccccccc---cccccCcceEeeecCCCc-cceeeeec-cceeEeccccCCCCcchhhh
Confidence 89999999876332222111 1112221 112355789999999853 33555655 99999999884457888888
Q ss_pred ecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCC--eEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 256 FRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG--KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 256 ~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~--~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
.+...+++++|||.- ..++++..||.+.+||+... +++.+.+-+ ....+.+.|++.+++|+.|..-|.
T Consensus 439 ~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~ 509 (555)
T KOG1587|consen 439 SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGT 509 (555)
T ss_pred hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCc
Confidence 888889999999974 56779999999999999753 445555544 567778889999999999988875
No 172
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=2.6e-16 Score=125.49 Aligned_cols=291 Identities=13% Similarity=0.084 Sum_probs=189.3
Q ss_pred cccCCCCCCCeeeeeecCcccEEEEEecCCcCCC--cce--eeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEE
Q 020454 5 TTLECPGCPPLRALTFDSLGLIKVIEARGEHGGV--PKV--VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL 80 (326)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~ 80 (326)
+++++..-...+++||+.|..||+|.++....+. .++ ....+.+.. .+..+.| ++.+.+|++|+.+|.|.+|
T Consensus 17 ~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~--aVN~vRf--~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 17 YSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTR--AVNVVRF--SPDGELLASGGDGGEVFLW 92 (434)
T ss_pred EEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcc--eeEEEEE--cCCcCeeeecCCCceEEEE
Confidence 4455555555699999999999999987763222 223 222333333 3334444 3456689999999999999
Q ss_pred eccccc--------------eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454 81 NPLNGD--------------LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (326)
Q Consensus 81 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~ 146 (326)
....-. .+.... ...|...+..++|.+ ++..+++++.|+.+++||+.....
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~------lr~h~~diydL~Ws~--------d~~~l~s~s~dns~~l~Dv~~G~l- 157 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKV------LRGHRDDIYDLAWSP--------DSNFLVSGSVDNSVRLWDVHAGQL- 157 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEE------ecccccchhhhhccC--------CCceeeeeeccceEEEEEecccee-
Confidence 765100 000000 014556777788877 677999999999999999876542
Q ss_pred cccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec---------CCC-CCCCCcCC----
Q 020454 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK---------PPP-KNSLGIFT---- 212 (326)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~---------~~~-~~~~~~~~---- 212 (326)
+...+ .+...+..++|.|-++++++-+.|...+.+.+...+.+.... ++. .....+.+
T Consensus 158 -------~~~~~-dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTl 229 (434)
T KOG1009|consen 158 -------LAILD-DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETL 229 (434)
T ss_pred -------Eeecc-ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCch
Confidence 22222 345678899999999999999999888888776544333221 100 00111111
Q ss_pred CCceeeeEEeecCCCcEEEEEeC----C-----CeEEEEeCCCCCCceeEEeecCCceEEEEecC---------------
Q 020454 213 PTWFTSAAFLSIDDHRKFVAGTN----D-----HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP--------------- 268 (326)
Q Consensus 213 ~~~v~~~~~~p~~~~~~l~~~~~----d-----g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~--------------- 268 (326)
+.....++|.| +|.++++... . +..++|+-...++|+..+.....+...+.|+|
T Consensus 230 ksFFrRlsfTP--dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~ 307 (434)
T KOG1009|consen 230 KSFFRRLSFTP--DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLF 307 (434)
T ss_pred hhhhhhcccCC--CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccccc
Confidence 12445667887 5667766532 2 23456665544566666665555555555553
Q ss_pred ---CCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 269 ---DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 269 ---~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
-+..++.++.+ .|++||.++.+++....+-|-..|+.++|+++|.+|+..|.||.-
T Consensus 308 ~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyC 366 (434)
T KOG1009|consen 308 VLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFC 366 (434)
T ss_pred ccccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCce
Confidence 22344555554 899999999988887765448899999999999999999999974
No 173
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=2.5e-16 Score=133.50 Aligned_cols=281 Identities=11% Similarity=0.078 Sum_probs=199.5
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCC-ceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~ 93 (326)
..|++++.|..+.+|..... +|......+.++-... ....+. .+.++++.+++-+..|-.++|...+...-.....
T Consensus 280 ~~LLSASaDksmiiW~pd~~-tGiWv~~vRlGe~gg~a~GF~g~--lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~ 356 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKPDEN-TGIWVDVVRLGEVGGSAGGFWGG--LWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPV 356 (764)
T ss_pred hhheecccCcceEEEecCCc-cceEEEEEEeecccccccceeeE--EEcCCCCEEEEecccCcEEEEeccCccceeeccc
Confidence 68999999999999998876 7777676677764422 223333 3455556788888899999998433222111111
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc-----cCCCceEEE
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-----CASGTIAFS 168 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~ 168 (326)
+ .+|.+.|.++.+.+ .+.++++.+.|-+-+++.-...+ . .|.. .|+-.+.|+
T Consensus 357 i-----SGH~~~V~dv~W~p--------sGeflLsvs~DQTTRlFa~wg~q------~----~wHEiaRPQiHGyDl~c~ 413 (764)
T KOG1063|consen 357 I-----SGHVDGVKDVDWDP--------SGEFLLSVSLDQTTRLFARWGRQ------Q----EWHEIARPQIHGYDLTCL 413 (764)
T ss_pred c-----ccccccceeeeecC--------CCCEEEEeccccceeeecccccc------c----ceeeecccccccccceee
Confidence 1 26778999999866 67899999999998888643111 1 1321 134468899
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCc--------------------------------eeeee-ecC---C---------
Q 020454 169 KVDISEKFSLFGGKGVEVNVWDLDKC--------------------------------EKIWT-AKP---P--------- 203 (326)
Q Consensus 169 ~~~~~~~~l~sg~~d~~i~iwd~~~~--------------------------------~~~~~-~~~---~--------- 203 (326)
++-+....+++|..+..+|+|+.... +..+. ..+ +
T Consensus 414 ~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 414 SFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred ehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 99887778889999999999997632 01110 000 0
Q ss_pred CCCC---------------------CC-cCCCCceeeeEEeecCCCcEEEEEeCCC-----eEEEEeCCCCCCceeEEee
Q 020454 204 PKNS---------------------LG-IFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLYDTSAQRRPVMSFDF 256 (326)
Q Consensus 204 ~~~~---------------------~~-~~~~~~v~~~~~~p~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~ 256 (326)
.... .. +.|.-.|++++.+| +++++|+++... .|++|+..+. ..++.+.+
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~--~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~ 570 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP--TGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEG 570 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC--CCCEEeehhhhCCccceEEEEEeccch-hhhheecc
Confidence 0000 00 11333588888887 566999987543 6999999987 44678999
Q ss_pred cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE----EEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 257 ~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~----~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
|.-.|+.++|||||++|++.+.|+++.+|....... ....+.| ..-|++..|+|++.++||+|.|+.+
T Consensus 571 HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H-tRIIWdcsW~pde~~FaTaSRDK~V 642 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH-TRIIWDCSWSPDEKYFATASRDKKV 642 (764)
T ss_pred cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccccc-ceEEEEcccCcccceeEEecCCceE
Confidence 999999999999999999999999999999865422 2235677 8899999999999999999999875
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=1e-16 Score=124.40 Aligned_cols=253 Identities=12% Similarity=0.104 Sum_probs=167.9
Q ss_pred eeCCCCCeEEEEecCCcEEEEeccccceeee-----ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCc
Q 020454 60 DDSQNDPLLAVARKNGLTDILNPLNGDLRVA-----ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK 134 (326)
Q Consensus 60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~ 134 (326)
.|++++.-|++-+.|..+++|++...-.-.. .......-.-.....|....+++.-. ...+..+++++.+.+.-
T Consensus 56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~-s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMK-SDQPSTNLFAVSSRDQP 134 (406)
T ss_pred eeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccc-cCCCccceeeeccccCc
Confidence 3567777899999999999999852211110 00000000002224455555543111 11235567888888999
Q ss_pred EEEEEccccccccccccceEEEEEc-cCCCceEEEEEcCCCCEEEEecCCCeEEEEEC-CCcee--eeeecCCCCCCCCc
Q 020454 135 ASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDL-DKCEK--IWTAKPPPKNSLGI 210 (326)
Q Consensus 135 v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~-~~~~~--~~~~~~~~~~~~~~ 210 (326)
|++||.-.... ....+.++. ..-....++.|+|+|.+|+. +....|++||+ +.++. ++....+.+ .
T Consensus 135 Ih~wdaftG~l-----raSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k----~ 204 (406)
T KOG2919|consen 135 IHLWDAFTGKL-----RASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGK----F 204 (406)
T ss_pred eeeeecccccc-----ccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhccc----c
Confidence 99998543221 112222221 11124669999999999876 56779999999 55542 222211111 1
Q ss_pred CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-CCcEEEEECCC
Q 020454 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT 289 (326)
Q Consensus 211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~ 289 (326)
....-+.+++|+|.. ...++.++....+-||.-... .|+..+-+|.+.|+.++|+++|+.|++|+. |-.|-.||++.
T Consensus 205 gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred cccceeeeeeccCCC-CcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 112447899999974 558999999999999987765 788888899999999999999999999886 67899999996
Q ss_pred -CeEEEEEcceecc-eEEEEEEC--CCCCEEEEeccCccCC
Q 020454 290 -GKLLGCFIGKCSG-SIRSIARH--PTLPIIASCGFLEAAS 326 (326)
Q Consensus 290 -~~~~~~~~~~~~~-~v~~l~~~--p~~~~l~s~s~D~~~~ 326 (326)
..++..+..| .+ .-..|.|. |++++|++|+.||.++
T Consensus 283 ~~~pv~~L~rh-v~~TNQRI~FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 283 SRDPVYALERH-VGDTNQRILFDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred ccchhhhhhhh-ccCccceEEEecCCCCceeeccCCCccEE
Confidence 4567777777 44 44455554 8999999999999864
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=9e-15 Score=122.71 Aligned_cols=276 Identities=11% Similarity=0.114 Sum_probs=158.4
Q ss_pred eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEE-ecCCcEEEEecc-ccceeeeeccc
Q 020454 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA-RKNGLTDILNPL-NGDLRVAISNA 94 (326)
Q Consensus 17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~dg~i~i~~~~-~~~~~~~~~~~ 94 (326)
.++...++.|++|++... +..++........... .+.+ ++++++|+++ ..++.|.+|++. ++++ ......
T Consensus 5 y~~~~~~~~I~~~~~~~~--g~l~~~~~~~~~~~~~---~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~ 76 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE--GALTLLQVVDVPGQVQ---PMVI--SPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAES 76 (330)
T ss_pred EEEcCCCCCEEEEEECCC--CceeeeeEEecCCCCc---cEEE--CCCCCEEEEEECCCCcEEEEEECCCCce-EEeeee
Confidence 455677899999999632 3333433443222211 1222 3455677665 457999999986 3333 222211
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (326)
...+....+.+.+ +++.+++++ .++.+.+|+++...... ..+.. .........+.++|+
T Consensus 77 ------~~~~~p~~i~~~~--------~g~~l~v~~~~~~~v~v~~~~~~g~~~----~~~~~--~~~~~~~~~~~~~p~ 136 (330)
T PRK11028 77 ------PLPGSPTHISTDH--------QGRFLFSASYNANCVSVSPLDKDGIPV----APIQI--IEGLEGCHSANIDPD 136 (330)
T ss_pred ------cCCCCceEEEECC--------CCCEEEEEEcCCCeEEEEEECCCCCCC----Cceee--ccCCCcccEeEeCCC
Confidence 1112344566544 455666655 48899999986432110 11111 122345677889999
Q ss_pred CCEEEEec-CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-CCeEEEEeCCCCC-C-
Q 020454 174 EKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQR-R- 249 (326)
Q Consensus 174 ~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-dg~v~iwd~~~~~-~- 249 (326)
++++++++ .++.|.+||+.+...+....... ...........+.|+| +++++++... +++|.+||+.... .
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~---~~~~~g~~p~~~~~~p--dg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE---VTTVEGAGPRHMVFHP--NQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCc---eecCCCCCCceEEECC--CCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 98885544 56899999997633221100000 0000112345789988 5667777665 8999999987321 1
Q ss_pred -ceeEEeec------CCceEEEEecCCCCeEEEEcC-CCcEEEEECCCCeEEEEEcce--ecceEEEEEECCCCCEEEEe
Q 020454 250 -PVMSFDFR------ETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 250 -~~~~~~~~------~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~s~ 319 (326)
.+.++... ......+.++|++++++++.. ++.|.+|++.......++.++ .....+.+.++|++++|+++
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va 291 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAA 291 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEE
Confidence 12222211 112335889999999998865 689999999653321122221 01245689999999999987
Q ss_pred cc-CccC
Q 020454 320 GF-LEAA 325 (326)
Q Consensus 320 s~-D~~~ 325 (326)
+. ++.+
T Consensus 292 ~~~~~~v 298 (330)
T PRK11028 292 GQKSHHI 298 (330)
T ss_pred EccCCcE
Confidence 64 5543
No 176
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=7.8e-17 Score=132.92 Aligned_cols=206 Identities=17% Similarity=0.162 Sum_probs=147.7
Q ss_pred CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~ 143 (326)
....|+.++.||.+.|.+- .+++...+. .|.+.+.+-.+.+ ++.-++++++||.|++|+-.
T Consensus 74 ~~d~~~i~s~DGkf~il~k-~~rVE~sv~--------AH~~A~~~gRW~~--------dGtgLlt~GEDG~iKiWSrs-- 134 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNK-SARVERSIS--------AHAAAISSGRWSP--------DGAGLLTAGEDGVIKIWSRS-- 134 (737)
T ss_pred CcceEEEEcCCceEEEecc-cchhhhhhh--------hhhhhhhhcccCC--------CCceeeeecCCceEEEEecc--
Confidence 3446999999999999886 455433333 5557777544433 56679999999999999833
Q ss_pred ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454 144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (326)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 223 (326)
|.++.--.....+|+|++|.|+.+-++.+ ..+.+.|=-+.....+.+.+.|. .-|.++.|+|
T Consensus 135 --------GMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHD---------GiiL~~~W~~ 196 (737)
T KOG1524|consen 135 --------GMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHD---------GLVLSLSWST 196 (737)
T ss_pred --------chHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccC---------cEEEEeecCc
Confidence 23322223346789999999987555443 34566666665555544445543 4578999998
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecce
Q 020454 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (326)
Q Consensus 224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~ 303 (326)
..+ ++++|+.|-..++||.. + +++..-..|+.+|++++|.|+ ..++.|+.+ +++ +.....+.
T Consensus 197 ~s~--lI~sgGED~kfKvWD~~-G-~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R------------~~~p~~GS 258 (737)
T KOG1524|consen 197 QSN--IIASGGEDFRFKIWDAQ-G-ANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR------------FSSPRVGS 258 (737)
T ss_pred ccc--ceeecCCceeEEeeccc-C-cccccCChhccceeeeeeccc-cceeeeeee-eee------------ecCCCccc
Confidence 543 99999999999999987 3 467777889999999999999 666666543 333 32223789
Q ss_pred EEEEEECCCCCEEEEeccCcc
Q 020454 304 IRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 304 v~~l~~~p~~~~l~s~s~D~~ 324 (326)
|..++|++||..++.|..-|.
T Consensus 259 ifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 259 IFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred eEEEEEcCCCceeeccccCce
Confidence 999999999999988876654
No 177
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.2e-17 Score=130.64 Aligned_cols=186 Identities=18% Similarity=0.146 Sum_probs=136.0
Q ss_pred CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 201 (326)
++..+.+++.||.+++|++.... .......+...|.++.|+|++++|++-+.| ..+||+.+++..+....
T Consensus 155 ~gs~latgg~dg~lRv~~~Ps~~---------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 155 DGSKLATGGTDGTLRVWEWPSML---------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred CCCEeeeccccceEEEEecCcch---------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 55789999999999999965432 112223567799999999999999999999 99999999985554433
Q ss_pred CCCCCCCCcCCCCceeeeEEeecCC--CcEEE-EEeCCCeEEEEeCCCCCC----ceeEEeecCCceEEEEecCCCCeEE
Q 020454 202 PPPKNSLGIFTPTWFTSAAFLSIDD--HRKFV-AGTNDHQVRLYDTSAQRR----PVMSFDFRETPIKAVAEEPDSFNIY 274 (326)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~p~~~--~~~l~-~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~i~~v~~s~~~~~l~ 274 (326)
....+. ....+.|+..+. .-+++ ....-+.|+.||+..... +..+.......|++++.+++|++++
T Consensus 225 ~~~k~~-------~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 225 PFSKDE-------MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA 297 (398)
T ss_pred Ccccch-------hhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence 222111 134556654221 21233 334456788887664433 2233333446799999999999999
Q ss_pred EEcCCCcEEEEECCCCeEEEEEc-ceecceEEEEEECCCCCEEEEeccCccC
Q 020454 275 IGNGSGDLASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 275 ~g~~dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.|+.||.|.|++..+.+.++-++ .| ...|+.|.|+|+.+++++.|.|..+
T Consensus 298 lGT~dGsVai~~~~~lq~~~~vk~aH-~~~VT~ltF~Pdsr~~~svSs~~~~ 348 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQRLQYVKEAH-LGFVTGLTFSPDSRYLASVSSDNEA 348 (398)
T ss_pred EeccCCcEEEEEeceeeeeEeehhhh-eeeeeeEEEcCCcCcccccccCCce
Confidence 99999999999999998888776 55 9999999999999999999888654
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=3.8e-16 Score=138.34 Aligned_cols=235 Identities=20% Similarity=0.254 Sum_probs=164.4
Q ss_pred CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~ 143 (326)
-.+.++++...-.|++||.+.++....+..-. .-...|..+.+.+.+ +...+++++.||.|+||+--..
T Consensus 1075 f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~------D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1075 FEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQ------DDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeeccc------chhheeeeccCceEEEeccccc
Confidence 34568888888999999999888877776532 223578888888855 5678999999999999973221
Q ss_pred ccccccccceEEEEEccCC------CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCcee
Q 020454 144 KVSAESSCSTVKSWNVCAS------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT 217 (326)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 217 (326)
.. ..-+.+..|..-.+ +.=.-++|..+..+|+++|.-..|+|||......+..+..... .-|+
T Consensus 1144 ~~---~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~--------t~vT 1212 (1387)
T KOG1517|consen 1144 KW---KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS--------TLVT 1212 (1387)
T ss_pred cc---CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC--------ccce
Confidence 10 12233444442110 1114456776666677777788999999987776665443322 2355
Q ss_pred eeEEeecCCCcEEEEEeCCCeEEEEeCCCCC--CceeEEeecCCc--eEEEEecCCCCe-EEEEcCCCcEEEEECCCCeE
Q 020454 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--RPVMSFDFRETP--IKAVAEEPDSFN-IYIGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 218 ~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~--i~~v~~s~~~~~-l~~g~~dg~v~iwd~~~~~~ 292 (326)
++.-.-. .|+.+++|..||.|++||.|... ..+..++.|... |..+.+.++|-. |++|+.+|.|++||++....
T Consensus 1213 aLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1213 ALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred eeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence 6554432 46799999999999999988542 256677777776 999999887654 99999999999999997422
Q ss_pred EE--EEccee-cc-eEEEEEECCCCCEEEEecc
Q 020454 293 LG--CFIGKC-SG-SIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 293 ~~--~~~~~~-~~-~v~~l~~~p~~~~l~s~s~ 321 (326)
.. .+..|. .+ ..+++..|++.++||+|+.
T Consensus 1292 e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred cccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 21 222331 13 4999999999999999986
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=4.9e-17 Score=134.67 Aligned_cols=257 Identities=10% Similarity=0.044 Sum_probs=168.8
Q ss_pred eeeeeecCcccEEEEEecC---CcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454 15 LRALTFDSLGLIKVIEARG---EHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~ 91 (326)
--+++++++|.+++|++.+ ......+.+.+|..+..++.++++ ..++..+++|+.||+|+.|++.... ..+
T Consensus 307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v----~~n~~~~ysgg~Dg~I~~w~~p~n~--dp~ 380 (577)
T KOG0642|consen 307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV----PSNGEHCYSGGIDGTIRCWNLPPNQ--DPD 380 (577)
T ss_pred CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe----cCCceEEEeeccCceeeeeccCCCC--Ccc
Confidence 4599999999999999932 223455566677766666554433 3455589999999999999765111 111
Q ss_pred ccc----CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc-CCCceE
Q 020454 92 SNA----GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIA 166 (326)
Q Consensus 92 ~~~----~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~ 166 (326)
..+ ......+|.+.+..+.+.. ....|++|+.||+++.|....... +.+... ..+.-.
T Consensus 381 ds~dp~vl~~~l~Ghtdavw~l~~s~--------~~~~Llscs~DgTvr~w~~~~~~~---------~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 381 DSYDPSVLSGTLLGHTDAVWLLALSS--------TKDRLLSCSSDGTVRLWEPTEESP---------CTFGEPKEHGYPL 443 (577)
T ss_pred cccCcchhccceeccccceeeeeecc--------cccceeeecCCceEEeeccCCcCc---------cccCCccccCCcc
Confidence 111 0011236778888787654 556799999999999999665432 111111 122234
Q ss_pred EEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC
Q 020454 167 FSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (326)
Q Consensus 167 ~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~ 245 (326)
++++-... ..+++...-+.--++++.....+..+....... .+....+.-+.++|.. .+.+++..|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~--~~~~~~in~vVs~~~~--~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG--PRRYPQINKVVSHPTA--DITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc--ccccCccceEEecCCC--CeeEecccCCceeccccc
Confidence 45544333 223333333334445555444433333221111 1112346677778754 389999999999999999
Q ss_pred CCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce
Q 020454 246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (326)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~ 299 (326)
++ .++++...|...++++++.|+|.+|++|+.||.+++|.+....+......|
T Consensus 520 ~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 520 TG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred cc-ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 88 678999999999999999999999999999999999999877776665554
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.74 E-value=5.5e-14 Score=121.74 Aligned_cols=265 Identities=17% Similarity=0.262 Sum_probs=179.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCC-eEEEE-ecCCcEEEEeccc-cceeeee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVA-RKNGLTDILNPLN-GDLRVAI 91 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g-~~dg~i~i~~~~~-~~~~~~~ 91 (326)
..++.++.++.+.+|+..... .....+..... ..+...... ..... +++.. ..|+.+.+|+... ......+
T Consensus 78 ~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 151 (466)
T COG2319 78 ELLLSGSSDGTIKLWDLDNGE----KLIKSLEGLHD-SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL 151 (466)
T ss_pred cEEEEecCCCcEEEEEcCCCc----eeEEEEeccCC-CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEE
Confidence 446667789999999998761 12222222111 233333333 33333 44443 4499999999976 4444444
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec-CCcEEEEEccccccccccccceEEEEEccCCCceEEEEE
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~-~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 170 (326)
. .+...+..+.+.+ ....+++++. ++.+++|++.... .+..... +...+.++++
T Consensus 152 ~--------~~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~v~~~~~ 206 (466)
T COG2319 152 E--------GHSESVTSLAFSP--------DGKLLASGSSLDGTIKLWDLRTGK--------PLSTLAG-HTDPVSSLAF 206 (466)
T ss_pred e--------cCcccEEEEEECC--------CCCEEEecCCCCCceEEEEcCCCc--------eEEeecc-CCCceEEEEE
Confidence 4 4456777777655 4446777775 9999999977522 2333332 5678999999
Q ss_pred cCCCC-EEEEecCCCeEEEEECCCceeee-eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC
Q 020454 171 DISEK-FSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (326)
Q Consensus 171 ~~~~~-~l~sg~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~ 248 (326)
+|++. ++++++.|+.|++||...+.... .+..+... + -..|+|. +..+++++.|+.+++||.+...
T Consensus 207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---------~-~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS---------V-VSSFSPD--GSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc---------e-eEeECCC--CCEEEEecCCCcEEEeeecCCC
Confidence 99987 56666999999999988666665 34443321 1 1167774 3588899999999999999764
Q ss_pred CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc--ceecceEEEEEECCCCCEEEEe-ccCc
Q 020454 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI--GKCSGSIRSIARHPTLPIIASC-GFLE 323 (326)
Q Consensus 249 ~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~--~~~~~~v~~l~~~p~~~~l~s~-s~D~ 323 (326)
..+..+..|...+.++.|+|++..+++++.|+.+.+||..+........ .| ...+..+.|.+++..++.+ ..|+
T Consensus 275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeeccc-CCceEEEEECCCCCEEEEeecCCC
Confidence 4244445678899999999988888889989899999999887766665 66 7789999994332455555 5554
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=7.1e-16 Score=118.06 Aligned_cols=222 Identities=11% Similarity=0.136 Sum_probs=153.6
Q ss_pred cccEEEEEecCCcCCCcceeeeccC-CCCCceEEEEEeeeCCCC-CeEEEEecCCcEEEEeccccce---eeeecccCCC
Q 020454 23 LGLIKVIEARGEHGGVPKVVERWGD-PHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDL---RVAISNAGDS 97 (326)
Q Consensus 23 ~G~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~i~~~~~~~~---~~~~~~~~~~ 97 (326)
...+|+|.+...+ ........... ....-+.--.+|+|..-+ +++.+++-|-+..|||++++.. ...+-
T Consensus 120 ~D~LRlWri~~ee-~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI----- 193 (364)
T KOG0290|consen 120 SDFLRLWRIGDEE-SRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI----- 193 (364)
T ss_pred cCeEEEEeccCcC-CceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE-----
Confidence 3489999998541 11111111111 111111112455655443 4788899999999999988632 22222
Q ss_pred CCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccC-CCceEEEEEcCCC-C
Q 020454 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISE-K 175 (326)
Q Consensus 98 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~-~ 175 (326)
.|+..|..+++... ..+.+++++.||.++++|++..++. ..+|+-.. ..+...++|+++. +
T Consensus 194 ---AHDKEV~DIaf~~~-------s~~~FASvgaDGSvRmFDLR~leHS-------TIIYE~p~~~~pLlRLswnkqDpn 256 (364)
T KOG0290|consen 194 ---AHDKEVYDIAFLKG-------SRDVFASVGADGSVRMFDLRSLEHS-------TIIYEDPSPSTPLLRLSWNKQDPN 256 (364)
T ss_pred ---ecCcceeEEEeccC-------ccceEEEecCCCcEEEEEecccccc-------eEEecCCCCCCcceeeccCcCCch
Confidence 67789999997551 3468999999999999999877653 23444333 6788999999876 8
Q ss_pred EEEEecCC-CeEEEEECCCc-eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-----
Q 020454 176 FSLFGGKG-VEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----- 248 (326)
Q Consensus 176 ~l~sg~~d-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~----- 248 (326)
++|+-..| ..|.|.|++.. .++..+++|. ..|++++|.|. ....|++++.|.++.+||+....
T Consensus 257 ymATf~~dS~~V~iLDiR~P~tpva~L~~H~---------a~VNgIaWaPh-S~~hictaGDD~qaliWDl~q~~~~~~~ 326 (364)
T KOG0290|consen 257 YMATFAMDSNKVVILDIRVPCTPVARLRNHQ---------ASVNGIAWAPH-SSSHICTAGDDCQALIWDLQQMPRENGE 326 (364)
T ss_pred HHhhhhcCCceEEEEEecCCCcceehhhcCc---------ccccceEecCC-CCceeeecCCcceEEEEecccccccCCC
Confidence 88886655 56999999864 5677788876 56889999997 45599999999999999987432
Q ss_pred CceeEEeecCCceEEEEecCC-CCeEEEEcC
Q 020454 249 RPVMSFDFRETPIKAVAEEPD-SFNIYIGNG 278 (326)
Q Consensus 249 ~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~ 278 (326)
.|+..+. .++.|..+.|++. +..|+.+..
T Consensus 327 dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 327 DPILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred Cchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 2444554 4578999999965 667776544
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=1.1e-16 Score=127.32 Aligned_cols=151 Identities=10% Similarity=0.117 Sum_probs=122.5
Q ss_pred cCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCce-------eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE
Q 020454 160 CASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCE-------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (326)
Q Consensus 160 ~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~ 231 (326)
.|..+|..++|.|- .+.||+|+.|.+|.||++..+- ++..+.+|. ..|.-++|+|... +.|+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~---------rrVg~V~wHPtA~-NVLl 148 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ---------RRVGLVQWHPTAP-NVLL 148 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc---------eeEEEEeecccch-hhHh
Confidence 35678999999995 5889999999999999997643 333444443 6688999999754 4899
Q ss_pred EEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecc-eEEEEEEC
Q 020454 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG-SIRSIARH 310 (326)
Q Consensus 232 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l~~~ 310 (326)
+++.|.+|.+||+.+++ .+.++. |...|+++.|+.||.+|++.+.|..|+|||.++++++..-.+| .+ .-..+.|-
T Consensus 149 sag~Dn~v~iWnv~tge-ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h-eG~k~~Raifl 225 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGE-ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH-EGAKPARAIFL 225 (472)
T ss_pred hccCCceEEEEeccCCc-eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc-cCCCcceeEEe
Confidence 99999999999999984 456665 8999999999999999999999999999999999999888777 54 34455676
Q ss_pred CCCCEEEEeccCcc
Q 020454 311 PTLPIIASCGFLEA 324 (326)
Q Consensus 311 p~~~~l~s~s~D~~ 324 (326)
-++. |+|.|..++
T Consensus 226 ~~g~-i~tTGfsr~ 238 (472)
T KOG0303|consen 226 ASGK-IFTTGFSRM 238 (472)
T ss_pred ccCc-eeeeccccc
Confidence 7777 777776553
No 183
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=4.6e-15 Score=133.39 Aligned_cols=245 Identities=14% Similarity=0.111 Sum_probs=156.7
Q ss_pred eeeeeecCcccEEEEEecCCc--CCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceee--e
Q 020454 15 LRALTFDSLGLIKVIEARGEH--GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV--A 90 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~--~ 90 (326)
--+++|+.||+||||+...-. .+..+-..+|.........+.++. .+..+|+++.||.|++.+++..+... .
T Consensus 1062 s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~----~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG----NGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc----CCCeEEEEcCCCeEEEEEcccccccccee
Confidence 568999999999999987541 233344445654344444444443 33469999999999999987522111 1
Q ss_pred ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccC---CCceEE
Q 020454 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA---SGTIAF 167 (326)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~ 167 (326)
.....+ .....+.++.+.-+.... ....++.++..+.+..||..... ..|.... .+.|++
T Consensus 1138 ~~~ri~--n~~~~g~vv~m~a~~~~~-----~S~~lvy~T~~~~iv~~D~r~~~----------~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1138 TQVRIP--NLKKDGVVVSMHAFTAIV-----QSHVLVYATDLSRIVSWDTRMRH----------DAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eeeecc--cccCCCceEEeecccccc-----cceeEEEEEeccceEEecchhhh----------hHHhhhcCccccceeE
Confidence 111111 124456677776554321 22378888999999999977533 2333322 457999
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC--CcEEEEEe-CCCeEEEEeC
Q 020454 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGT-NDHQVRLYDT 244 (326)
Q Consensus 168 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~~l~~~~-~dg~v~iwd~ 244 (326)
+..+|.++++++|...|.+.+||++-+.++...+. ....+++.+..+|... .-.+.+++ ..+.|.+|++
T Consensus 1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~--------P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH--------PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred EEecCCceEEEEecCCceEEEEEeecCceeecccC--------cccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 99999999999999999999999997777665332 2234677777766533 32344444 6789999999
Q ss_pred CCCCCceeEEeec-CC------------------ceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 245 SAQRRPVMSFDFR-ET------------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 245 ~~~~~~~~~~~~~-~~------------------~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
.++.. ...+-.. .. .....++...+.++++|+.|..|+.||...
T Consensus 1273 ~~g~~-~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1273 ETGLR-QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred ccCcc-eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 87632 2222211 00 111223434466888999999999999764
No 184
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=3.7e-17 Score=132.42 Aligned_cols=215 Identities=8% Similarity=0.062 Sum_probs=170.3
Q ss_pred EeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEE
Q 020454 58 SIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM 137 (326)
Q Consensus 58 ~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i 137 (326)
.+....++.+|+.|+.-|.|-.+|..++++..++... ..|..+.++. ...+++......++|
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---------Etv~Dv~~LH---------neq~~AVAQK~y~yv 195 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---------ETVRDVTFLH---------NEQFFAVAQKKYVYV 195 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeehh---------hhhhhhhhhc---------chHHHHhhhhceEEE
Confidence 3456678889999999999999999999998888763 4567677665 346777778888999
Q ss_pred EEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCcee
Q 020454 138 RSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT 217 (326)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 217 (326)
||-.. ..+..++....|..+.|-|..-+|++++..|.++--|+.+|+.+..+.... ..+.
T Consensus 196 YD~~G-----------tElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~---------G~~~ 255 (545)
T KOG1272|consen 196 YDNNG-----------TELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA---------GRTD 255 (545)
T ss_pred ecCCC-----------cEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC---------Cccc
Confidence 98332 223334446689999999999999999999999999999999877654432 2233
Q ss_pred eeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 218 ~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
.+.-.|. +-.+-+|...|+|.+|.+.+. .|+..+..|.++|.++++.++|+|+++.+.|..++|||++.-..++++.
T Consensus 256 vm~qNP~--NaVih~GhsnGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 256 VMKQNPY--NAVIHLGHSNGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred hhhcCCc--cceEEEcCCCceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence 4444553 337889999999999999976 7788888999999999999999999999999999999999887777665
Q ss_pred ceecceEEEEEECCCCCE
Q 020454 298 GKCSGSIRSIARHPTLPI 315 (326)
Q Consensus 298 ~~~~~~v~~l~~~p~~~~ 315 (326)
. ..+...+++|..+.+
T Consensus 333 t--p~~a~~ls~SqkglL 348 (545)
T KOG1272|consen 333 T--PHPASNLSLSQKGLL 348 (545)
T ss_pred c--CCCccccccccccce
Confidence 3 347788888877643
No 185
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=2e-16 Score=122.98 Aligned_cols=248 Identities=14% Similarity=0.179 Sum_probs=160.8
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~ 95 (326)
-+++++.-|.|||.|+.++ +....+..+... +-.+-+.+ ...+++++++.|.+|++|++++...+..+.-+
T Consensus 107 ~la~~G~~GvIrVid~~~~-----~~~~~~~ghG~s--INeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~- 177 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSG-----QCSKNYRGHGGS--INEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV- 177 (385)
T ss_pred eEEeecceeEEEEEecchh-----hhccceeccCcc--chhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEeccc-
Confidence 3566669999999999987 443333333322 22333322 23348999999999999999999988887764
Q ss_pred CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc-------cccccceEEEEE----------
Q 020454 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS-------AESSCSTVKSWN---------- 158 (326)
Q Consensus 96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~-------~~~~~~~~~~~~---------- 158 (326)
..|.+.|.++.+.. ++.++++++.|.++++|+++..+.. .-..+++.+-+.
T Consensus 178 ----egHrdeVLSvD~~~--------~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 178 ----EGHRDEVLSVDFSL--------DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred ----ccccCcEEEEEEcC--------CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 37778999888755 6679999999999999999843210 001111111000
Q ss_pred --ccCCCceEEEEEcCCCCEEEEecCCCeEEEEEC-CCceeeeeecCCCCCCC---CcC---CCCceeeeEEeecCCCcE
Q 020454 159 --VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDL-DKCEKIWTAKPPPKNSL---GIF---TPTWFTSAAFLSIDDHRK 229 (326)
Q Consensus 159 --~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~-~~~~~~~~~~~~~~~~~---~~~---~~~~v~~~~~~p~~~~~~ 229 (326)
--|...|-|++|- |+++++-+-++.|..|.. +-.+.+...+......- .+. ...|--..+|.| -.+.
T Consensus 246 t~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~--~~~~ 321 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP--WQKM 321 (385)
T ss_pred ccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH--HHHH
Confidence 0112234455553 588999999999999987 32333222222111110 011 112433444444 4568
Q ss_pred EEEEeCCCeEEEEeCCCCCCce-eEE--eecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 230 FVAGTNDHQVRLYDTSAQRRPV-MSF--DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 230 l~~~~~dg~v~iwd~~~~~~~~-~~~--~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
||.|...|.|.+||++....+. .++ ......|...+|+.|+..|+..+.|++|--||..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999999764422 122 2345689999999999999999999999999854
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.70 E-value=2.2e-14 Score=121.74 Aligned_cols=243 Identities=11% Similarity=0.114 Sum_probs=173.5
Q ss_pred eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (326)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~ 132 (326)
++..+++.++.. .|+.+. +..+.+||...|..+.+++ .|.+.|.++++.. ++..+++|+.|
T Consensus 14 ci~d~afkPDGs--qL~lAA-g~rlliyD~ndG~llqtLK--------gHKDtVycVAys~--------dGkrFASG~aD 74 (1081)
T KOG1538|consen 14 CINDIAFKPDGT--QLILAA-GSRLLVYDTSDGTLLQPLK--------GHKDTVYCVAYAK--------DGKRFASGSAD 74 (1081)
T ss_pred chheeEECCCCc--eEEEec-CCEEEEEeCCCcccccccc--------cccceEEEEEEcc--------CCceeccCCCc
Confidence 555666665544 355444 3568999999999988877 7778999999866 67889999999
Q ss_pred CcEEEEEccccccccccccceE--------------------EEEEccC--------CCceEEEEEcCCCCEEEEecCCC
Q 020454 133 GKASMRSIEVTKVSAESSCSTV--------------------KSWNVCA--------SGTIAFSKVDISEKFSLFGGKGV 184 (326)
Q Consensus 133 g~v~i~~~~~~~~~~~~~~~~~--------------------~~~~~~~--------~~~v~~~~~~~~~~~l~sg~~d~ 184 (326)
..|.+|+-..+....-+....+ ..|.... ...+.+.+|..+|++|+.|-.||
T Consensus 75 K~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nG 154 (1081)
T KOG1538|consen 75 KSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNG 154 (1081)
T ss_pred eeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCc
Confidence 9999998655432111111111 1232211 12477889999999999999999
Q ss_pred eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC---CcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCce
Q 020454 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (326)
Q Consensus 185 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i 261 (326)
+|.|-+-...+.+. +...... ..+|.+++|+|+.. ...+++.....++.+|.+... .+..-..-+..-
T Consensus 155 TIsiRNk~gEek~~-I~Rpgg~------Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~Igk~r~L~FdP 225 (1081)
T KOG1538|consen 155 TISIRNKNGEEKVK-IERPGGS------NSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QIGKDRALNFDP 225 (1081)
T ss_pred eEEeecCCCCcceE-EeCCCCC------CCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--eecccccCCCCc
Confidence 99998643333222 2221111 14577999998632 237888888888888888732 233333334456
Q ss_pred EEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 262 ~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.|+.+.++|.+++.|+.|+.+++|- +.|-.+.++-.. ...|+.++.+|++++++.|.-||++
T Consensus 226 ~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~-D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 226 CCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ-DSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred hhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc-ceeEEEEEEccCCceEEEEEccCee
Confidence 7889999999999999999999996 567777777664 8899999999999999999999985
No 187
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=3.5e-15 Score=123.24 Aligned_cols=199 Identities=11% Similarity=0.079 Sum_probs=136.6
Q ss_pred CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc
Q 020454 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (326)
Q Consensus 66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~ 145 (326)
--|++|-.-|.|.++|....++.+.+.. ........++++.|.+ .++..+++...+|.+++|+.+....
T Consensus 186 ~dllIGf~tGqvq~idp~~~~~sklfne----~r~i~ktsvT~ikWvp-------g~~~~Fl~a~~sGnlyly~~~~~~~ 254 (636)
T KOG2394|consen 186 LDLLIGFTTGQVQLIDPINFEVSKLFNE----ERLINKSSVTCIKWVP-------GSDSLFLVAHASGNLYLYDKEIVCG 254 (636)
T ss_pred cceEEeeccCceEEecchhhHHHHhhhh----cccccccceEEEEEEe-------CCCceEEEEEecCceEEeecccccc
Confidence 3488999999999999876444333322 1123346788888776 3567899999999999998633211
Q ss_pred ccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC
Q 020454 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (326)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 225 (326)
++ -.+....+++..++....-+ ..+..++...... ...|...+|+|
T Consensus 255 ~t-----------------~p~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~~---------~g~in~f~FS~-- 300 (636)
T KOG2394|consen 255 AT-----------------APSYQALKDGDQFAILTSKS------KKTRNPVARWHIG---------EGSINEFAFSP-- 300 (636)
T ss_pred CC-----------------CCcccccCCCCeeEEeeeec------cccCCccceeEec---------cccccceeEcC--
Confidence 10 11111223444433321100 0011122211111 12467789998
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEE
Q 020454 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (326)
Q Consensus 226 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 305 (326)
|+++||+.+.||.+||||..++ ..+..++.--+...|++|||||+||++|++|..|.||.+...+++..-++| ...|.
T Consensus 301 DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH-kSWVs 378 (636)
T KOG2394|consen 301 DGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH-KSWVS 378 (636)
T ss_pred CCceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc-cccee
Confidence 7889999999999999999876 434444433467899999999999999999999999999999999999998 99999
Q ss_pred EEEECC
Q 020454 306 SIARHP 311 (326)
Q Consensus 306 ~l~~~p 311 (326)
.++|+|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 999986
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=1.8e-15 Score=125.03 Aligned_cols=173 Identities=13% Similarity=0.125 Sum_probs=128.7
Q ss_pred CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 201 (326)
..+.++.++.||.+.+.+-...- ...+ -.|.+.+.+-+|+|+|.-|+++|+||.|++|.-...-.....+
T Consensus 74 ~~d~~~i~s~DGkf~il~k~~rV------E~sv----~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q 143 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKSARV------ERSI----SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQ 143 (737)
T ss_pred CcceEEEEcCCceEEEecccchh------hhhh----hhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhh
Confidence 45689999999999988733211 1111 2345678899999999999999999999999854322111111
Q ss_pred CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCc
Q 020454 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD 281 (326)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~ 281 (326)
....|++++|.|+.+ +.+.+.+ +.+.|=-+... ..+..++.|++-|.++.|++..+.|++|++|-.
T Consensus 144 ----------~~~~v~c~~W~p~S~-~vl~c~g--~h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k 209 (737)
T KOG1524|consen 144 ----------NEESIRCARWAPNSN-SIVFCQG--GHISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR 209 (737)
T ss_pred ----------cCceeEEEEECCCCC-ceEEecC--CeEEEeecccc-cceeEEeccCcEEEEeecCccccceeecCCcee
Confidence 124689999999643 3444433 55666566654 346788999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454 282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 282 v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
.++||-. |..+..-..| +.+|++++|+|+ +.++.+|.
T Consensus 210 fKvWD~~-G~~Lf~S~~~-ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 210 FKIWDAQ-GANLFTSAAE-EYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred EEeeccc-CcccccCChh-ccceeeeeeccc-cceeeeee
Confidence 9999974 7788777777 999999999999 55555654
No 189
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.69 E-value=9.2e-15 Score=116.45 Aligned_cols=220 Identities=14% Similarity=0.119 Sum_probs=154.6
Q ss_pred ecCCcEEEEecc-ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccc
Q 020454 72 RKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS 150 (326)
Q Consensus 72 ~~dg~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~ 150 (326)
+..|...+.-+. .|+.-..+.. +.+|.+++..+.|.+. ++..|++|++|.+|.+|.+.........
T Consensus 54 sgGgaf~ViPl~k~Gr~d~~~P~-----v~GHt~~vLDi~w~Pf-------nD~vIASgSeD~~v~vW~IPe~~l~~~l- 120 (472)
T KOG0303|consen 54 SGGGAFLVIPLVKTGRMDASYPL-----VCGHTAPVLDIDWCPF-------NDCVIASGSEDTKVMVWQIPENGLTRDL- 120 (472)
T ss_pred CCCcceeecccccccccCCCCCC-----ccCccccccccccCcc-------CCceeecCCCCceEEEEECCCcccccCc-
Confidence 333444444432 3444333333 3478899998887552 5778999999999999998876532221
Q ss_pred cceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454 151 CSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (326)
Q Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 229 (326)
...+.... .|...|--+.|||.. +.|++++.|++|.+||+.+++.+..++ |+.-|.++.|+. +|.+
T Consensus 121 tepvv~L~-gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----------hpd~i~S~sfn~--dGs~ 187 (472)
T KOG0303|consen 121 TEPVVELY-GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----------HPDMVYSMSFNR--DGSL 187 (472)
T ss_pred ccceEEEe-ecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC----------CCCeEEEEEecc--CCce
Confidence 12333333 457789999999975 899999999999999999999877754 446689999986 6779
Q ss_pred EEEEeCCCeEEEEeCCCCCCceeEEeecCC-ceEEEEecCCCCeEEEEc---CCCcEEEEECCCCeE---EEEEcceecc
Q 020454 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRET-PIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKL---LGCFIGKCSG 302 (326)
Q Consensus 230 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~i~~v~~s~~~~~l~~g~---~dg~v~iwd~~~~~~---~~~~~~~~~~ 302 (326)
|++.+.|+.|||||.|++ ..+..-..|++ .-..+.|-.+|..+-+|. .+..+.+||..+.+. ++.+.. ..
T Consensus 188 l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt--Sn 264 (472)
T KOG0303|consen 188 LCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT--SN 264 (472)
T ss_pred eeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc--CC
Confidence 999999999999999988 55666656654 334456777888555553 467899999776432 334442 44
Q ss_pred eEEEEEECCCCCEEEEec
Q 020454 303 SIRSIARHPTLPIIASCG 320 (326)
Q Consensus 303 ~v~~l~~~p~~~~l~s~s 320 (326)
.|.-=-|.|+..+|.-||
T Consensus 265 Gvl~PFyD~dt~ivYl~G 282 (472)
T KOG0303|consen 265 GVLLPFYDPDTSIVYLCG 282 (472)
T ss_pred ceEEeeecCCCCEEEEEe
Confidence 555556778777766655
No 190
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.2e-14 Score=115.82 Aligned_cols=277 Identities=12% Similarity=0.066 Sum_probs=190.1
Q ss_pred eeeeeecCcccEEEEEecCC-cCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454 15 LRALTFDSLGLIKVIEARGE-HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~ 93 (326)
-.|++|++|-.++||++..- ....+|.+...++ .+...++++.|. .....+++|..+++|.+-|+++.+.+..+..
T Consensus 69 ~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~-~H~SNIF~L~F~--~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~ 145 (609)
T KOG4227|consen 69 RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH-PHRSNIFSLEFD--LENRFLYSGERWGTVIKHDIETKQSIYVANE 145 (609)
T ss_pred eEEeecCCcceeeeechHHHHhhcCCCCceeccC-ccccceEEEEEc--cCCeeEecCCCcceeEeeecccceeeeeecc
Confidence 34889999999999998632 1222233333333 333444545443 4455799999999999999988877665553
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEE-EccCCCceEEEEEcC
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW-NVCASGTIAFSKVDI 172 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 172 (326)
. ...+.|.++...+ .++.+++.+.++.|.+||...... .+..+ -...+.....+.|+|
T Consensus 146 ~------~~~~~VY~m~~~P--------~DN~~~~~t~~~~V~~~D~Rd~~~-------~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 146 N------NNRGDVYHMDQHP--------TDNTLIVVTRAKLVSFIDNRDRQN-------PISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred c------CcccceeecccCC--------CCceEEEEecCceEEEEeccCCCC-------CCceeeecCCCccceeeeecC
Confidence 1 3346888888766 678999999999999999875431 11111 122355788899999
Q ss_pred CC-CEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCC-CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454 173 SE-KFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFT-PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (326)
Q Consensus 173 ~~-~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~ 249 (326)
.. .+|++.+..+-+.+||++... +++...... .+.. ...-.++.|+| +|+.|++.-...--.+||+.+++.
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~----~L~~~~~~~M~~~~~~--~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFK----GLPQENTEWMGSLWSP--SGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccc----cCcccchhhhheeeCC--CCCeehhhhccCCCEEeeeecccc
Confidence 75 788999999999999998654 233322111 1111 11224668888 456777777666677899887756
Q ss_pred ceeEEeecC------CceEEEEecCCCCeEEEEcCCCcEEEEECCC----------C-------------eEEEEEccee
Q 020454 250 PVMSFDFRE------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----------G-------------KLLGCFIGKC 300 (326)
Q Consensus 250 ~~~~~~~~~------~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~----------~-------------~~~~~~~~~~ 300 (326)
++.++.... ..+.+++|..+ ..+++|+.+=.|++|.+.. | +.+..++||
T Consensus 279 ~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH- 356 (609)
T KOG4227|consen 279 FVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH- 356 (609)
T ss_pred eeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecc-
Confidence 666665322 24667777644 4599999999999998863 1 234567898
Q ss_pred cceEEEEEECCCCCEEEEeccCc
Q 020454 301 SGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 301 ~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
..-++.+.|+|...+|++.|-.+
T Consensus 357 RSv~NQVRF~~H~~~l~SSGVE~ 379 (609)
T KOG4227|consen 357 RSVPNQVRFSQHNNLLVSSGVEN 379 (609)
T ss_pred cccccceeecCCcceEeccchhh
Confidence 99999999999999998887654
No 191
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.69 E-value=1.7e-16 Score=126.51 Aligned_cols=158 Identities=14% Similarity=0.120 Sum_probs=127.2
Q ss_pred CCCceEEEEEcCCCC-EEEEecCCCeEEEEECCCceeee---eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC
Q 020454 161 ASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIW---TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (326)
Q Consensus 161 ~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d 236 (326)
..+++.++.|+++.. .++||+.|..|+||-+.....-. .+.-+. ..-+|...|+.+.|+| +|.+|++|+.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s---~Ls~H~~aVN~vRf~p--~gelLASg~D~ 86 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLS---SLSRHTRAVNVVRFSP--DGELLASGGDG 86 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEee---cccCCcceeEEEEEcC--CcCeeeecCCC
Confidence 467999999999875 99999999999999987643221 111110 0112446799999998 56699999999
Q ss_pred CeEEEEeCC--------C-----CC--CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceec
Q 020454 237 HQVRLYDTS--------A-----QR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS 301 (326)
Q Consensus 237 g~v~iwd~~--------~-----~~--~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~ 301 (326)
|.|.+|-.. + .+ .......+|...|..++|+|+++++++|+.|+.+++||+..|.++..+..| .
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~ 165 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-E 165 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-c
Confidence 999999755 1 00 012334468889999999999999999999999999999999999999998 9
Q ss_pred ceEEEEEECCCCCEEEEeccCcc
Q 020454 302 GSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 302 ~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
.-|..++|.|-++++++=|.|+.
T Consensus 166 ~yvqgvawDpl~qyv~s~s~dr~ 188 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASKSSDRH 188 (434)
T ss_pred cccceeecchhhhhhhhhccCcc
Confidence 99999999999999999999873
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=4e-13 Score=106.39 Aligned_cols=223 Identities=11% Similarity=0.145 Sum_probs=155.6
Q ss_pred eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecC--CcEEEEeccccceeeeeccc
Q 020454 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN--GLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d--g~i~i~~~~~~~~~~~~~~~ 94 (326)
|-.|+.+|. ++++.+.. .. .+....+...++-+-|. . .++|..+.+ +.++++++..+..+..+...
T Consensus 20 lsvGs~~Gy-k~~~~~~~-----~k--~~~~~~~~~~IvEmLFS--S--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp 87 (391)
T KOG2110|consen 20 LSVGSKDGY-KIFSCSPF-----EK--CFSKDTEGVSIVEMLFS--S--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFP 87 (391)
T ss_pred EEccCCCce-eEEecCch-----HH--hhcccCCCeEEEEeecc--c--ceeEEEecCCCceEEEEEcccCceEEEEecC
Confidence 445566665 67777654 11 33333444444443332 2 256665555 45999999777766665542
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.+|.++.. +.+.|+++-++. |+|||++.... -+++..|. .+...+..+++++.+
T Consensus 88 ---------t~IL~Vrm----------Nr~RLvV~Lee~-IyIydI~~Mkl-----LhTI~t~~-~n~~gl~AlS~n~~n 141 (391)
T KOG2110|consen 88 ---------TSILAVRM----------NRKRLVVCLEES-IYIYDIKDMKL-----LHTIETTP-PNPKGLCALSPNNAN 141 (391)
T ss_pred ---------CceEEEEE----------ccceEEEEEccc-EEEEeccccee-----ehhhhccC-CCccceEeeccCCCC
Confidence 57776664 335677776665 99999886442 12333332 134457778888777
Q ss_pred CEEEEec--CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCe-EEEEeCCCCCCce
Q 020454 175 KFSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ-VRLYDTSAQRRPV 251 (326)
Q Consensus 175 ~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~-v~iwd~~~~~~~~ 251 (326)
.++|.=+ ..|.|.+||+.+.+++..+..|. ..+.+++|+| +|.+||+++..|+ ||+|.+.++ +.+
T Consensus 142 ~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~---------~~lAalafs~--~G~llATASeKGTVIRVf~v~~G-~kl 209 (391)
T KOG2110|consen 142 CYLAYPGSTTSGDVVLFDTINLQPVNTINAHK---------GPLAALAFSP--DGTLLATASEKGTVIRVFSVPEG-QKL 209 (391)
T ss_pred ceEEecCCCCCceEEEEEcccceeeeEEEecC---------CceeEEEECC--CCCEEEEeccCceEEEEEEcCCc-cEe
Confidence 8887632 35889999999999988887765 5688999998 7889999999885 789999987 557
Q ss_pred eEEeec--CCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 252 MSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 252 ~~~~~~--~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
.+|.-. ...|.+++|+|++.+|++.+..++|++|.+..
T Consensus 210 ~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 210 YEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 777643 34789999999999999999999999998864
No 193
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.68 E-value=3.2e-15 Score=125.98 Aligned_cols=193 Identities=14% Similarity=0.129 Sum_probs=139.5
Q ss_pred EecCCcEEEEecccc-ceeeee-cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccc
Q 020454 71 ARKNGLTDILNPLNG-DLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE 148 (326)
Q Consensus 71 g~~dg~i~i~~~~~~-~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~ 148 (326)
++..|.|-||++..- ++-... ..+ .....|..++|.+ .++..|+++++||.|++|.+..+... .
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l------~Ngt~vtDl~WdP-------FD~~rLAVa~ddg~i~lWr~~a~gl~-e 664 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGL------FNGTLVTDLHWDP-------FDDERLAVATDDGQINLWRLTANGLP-E 664 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCccccccc------ccCceeeecccCC-------CChHHeeecccCceEEEEEeccCCCC-c
Confidence 455699999999642 221111 110 2235678888654 35678999999999999998865531 1
Q ss_pred cccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC
Q 020454 149 SSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH 227 (326)
Q Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 227 (326)
.....-++.. .+.+.|++++|||-. +.|++++.|.+|++||+++++....+.+|.. .|.+++|+| +|
T Consensus 665 ~~~tPe~~lt-~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd---------qIf~~AWSp--dG 732 (1012)
T KOG1445|consen 665 NEMTPEKILT-IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD---------QIFGIAWSP--DG 732 (1012)
T ss_pred ccCCcceeee-cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC---------ceeEEEECC--CC
Confidence 1111222333 356789999999964 8999999999999999999998888888874 467889998 78
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCceeEEeecC-CceEEEEecCCCCeEEEEcCC----CcEEEEECCC
Q 020454 228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGS----GDLASVDIRT 289 (326)
Q Consensus 228 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~i~~v~~s~~~~~l~~g~~d----g~v~iwd~~~ 289 (326)
+.+++.+.||+|++|+.++..+++++-.+.. ..--.+.|.-+|+++++.+.| +.|.+||.++
T Consensus 733 r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 733 RRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred cceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 8999999999999999998877776654321 233456677789888866655 4577787664
No 194
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.6e-13 Score=98.96 Aligned_cols=257 Identities=14% Similarity=0.120 Sum_probs=162.3
Q ss_pred eeeecCcccEEEEEecCCc------CCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce---
Q 020454 17 ALTFDSLGLIKVIEARGEH------GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--- 87 (326)
Q Consensus 17 l~~~~~~G~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~--- 87 (326)
+++|..+|.|-|..+..-. .+..+++ .+ ..+...+..+.+.++ ++..+.||.|+=|...+...
T Consensus 25 l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv-~e--qahdgpiy~~~f~d~-----~Lls~gdG~V~gw~W~E~~es~~ 96 (325)
T KOG0649|consen 25 LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIV-PE--QAHDGPIYYLAFHDD-----FLLSGGDGLVYGWEWNEEEESLA 96 (325)
T ss_pred EEEecCCCeEEEEEehhhhccccCCCCCccee-ec--cccCCCeeeeeeehh-----heeeccCceEEEeeehhhhhhcc
Confidence 7788999999999975431 1222222 22 233333444444422 44455569999998753221
Q ss_pred -eeeecccCCCCC-CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCce
Q 020454 88 -RVAISNAGDSGA-QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (326)
Q Consensus 88 -~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v 165 (326)
+...+...|..+ ..+-..|.++...+ ..+.++.++.|+.++-||++... .-+.++ .|..-|
T Consensus 97 ~K~lwe~~~P~~~~~~evPeINam~ldP--------~enSi~~AgGD~~~y~~dlE~G~--------i~r~~r-GHtDYv 159 (325)
T KOG0649|consen 97 TKRLWEVKIPMQVDAVEVPEINAMWLDP--------SENSILFAGGDGVIYQVDLEDGR--------IQREYR-GHTDYV 159 (325)
T ss_pred chhhhhhcCccccCcccCCccceeEecc--------CCCcEEEecCCeEEEEEEecCCE--------EEEEEc-CCccee
Confidence 111121111111 11123455555544 45678888899999999987533 223343 456778
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC--CCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF--TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (326)
Q Consensus 166 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd 243 (326)
.++..-.....+++|++||++++||.++++.+..+........ ++ ...||.+++.+. + +++ |+....+.+|.
T Consensus 160 H~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~-lRp~~g~wigala~~e--d--Wlv-CGgGp~lslwh 233 (325)
T KOG0649|consen 160 HSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNL-LRPDWGKWIGALAVNE--D--WLV-CGGGPKLSLWH 233 (325)
T ss_pred eeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhh-cCcccCceeEEEeccC--c--eEE-ecCCCceeEEe
Confidence 8888855566778999999999999999998877665443332 22 345888887752 2 555 44567899999
Q ss_pred CCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEEC
Q 020454 244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (326)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 310 (326)
+++. .+...|... .++..+.|. ...+++++..+.|.-|.+. |.+....+.. .....+..|+
T Consensus 234 Lrss-e~t~vfpip-a~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~-s~~c~s~s~~ 294 (325)
T KOG0649|consen 234 LRSS-ESTCVFPIP-ARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVE-STACYSASWQ 294 (325)
T ss_pred ccCC-CceEEEecc-cceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCC-ccceeeeccc
Confidence 9987 567777554 667888884 5578888888899999875 5555555543 4455555555
No 195
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.7e-15 Score=123.64 Aligned_cols=282 Identities=16% Similarity=0.168 Sum_probs=194.0
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++|+++-.|-+||+..+ +....|.. .+...+...-|.+.....-+++++.||.|++=.+............
T Consensus 155 d~l~SgSDD~~vv~WdW~~~-----~~~l~f~S-GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl 228 (559)
T KOG1334|consen 155 DVLASGSDDLQVVVWDWVSG-----SPKLSFES-GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL 228 (559)
T ss_pred ceeeccCccceEEeehhhcc-----Cccccccc-ccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec
Confidence 46899999999999999876 44444442 3444444444556666667999999999999877544443322222
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCC--CceEEEEEcC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS--GTIAFSKVDI 172 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~ 172 (326)
..|.+++.-++..+. ....++++++|+.+.-.|+....... .+..-..... -....++.+|
T Consensus 229 -----~~h~g~vhklav~p~-------sp~~f~S~geD~~v~~~Dlr~~~pa~-----~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 229 -----APHEGPVHKLAVEPD-------SPKPFLSCGEDAVVFHIDLRQDVPAE-----KFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred -----ccccCccceeeecCC-------CCCcccccccccceeeeeeccCCccc-----eeeeeccCCccceeeeeEecCC
Confidence 256678877776552 34679999999999999987654221 1111111111 2577889999
Q ss_pred CC-CEEEEecCCCeEEEEECCCcee------eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC
Q 020454 173 SE-KFSLFGGKGVEVNVWDLDKCEK------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (326)
Q Consensus 173 ~~-~~l~sg~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~ 245 (326)
.. +++++|+.|..+++||.+.-.. +.++-.+. +.-..+..|++++|+.. +.-|++.-.|-.|+++...
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h---l~~d~~v~ITgl~Ysh~--~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH---LVEDDPVNITGLVYSHD--GSELLASYNDEDIYLFNKS 366 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCcc---ccccCcccceeEEecCC--ccceeeeecccceEEeccc
Confidence 76 5899999999999999875321 12222111 11134567999999853 3356777778899999543
Q ss_pred CCC-----------CceeE-EeecCC--ceEEEE-ecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEEC
Q 020454 246 AQR-----------RPVMS-FDFRET--PIKAVA-EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (326)
Q Consensus 246 ~~~-----------~~~~~-~~~~~~--~i~~v~-~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 310 (326)
.+. +.+.. +++|.. .|..+- |-|...|+++|+.=|.|+||+-.+++.+.-+.+. ..-|+||.-|
T Consensus 367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD-r~VVNCLEpH 445 (559)
T KOG1334|consen 367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD-RHVVNCLEPH 445 (559)
T ss_pred cccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-cceEeccCCC
Confidence 221 11222 555533 455655 4578899999999999999999999999888886 6699999999
Q ss_pred CCCCEEEEeccCccC
Q 020454 311 PTLPIIASCGFLEAA 325 (326)
Q Consensus 311 p~~~~l~s~s~D~~~ 325 (326)
|--++||++|.|.-+
T Consensus 446 P~~PvLAsSGid~DV 460 (559)
T KOG1334|consen 446 PHLPVLASSGIDHDV 460 (559)
T ss_pred CCCchhhccCCccce
Confidence 999999999998643
No 196
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.66 E-value=3.8e-13 Score=116.48 Aligned_cols=227 Identities=20% Similarity=0.263 Sum_probs=160.9
Q ss_pred CCCCCeEEEEecCCcEEEEeccccc-eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCc-eEEEEec-CCcEEEE
Q 020454 62 SQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR-TLLTCTT-KGKASMR 138 (326)
Q Consensus 62 ~~~~~~l~~g~~dg~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~l~~~~~-~g~v~i~ 138 (326)
...+..++.++.|+.+.+|+...+. ....+... +...+..+.... . ... .++..+. ++.+.+|
T Consensus 74 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~------~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 74 SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL-------HDSSVSKLALSS-P------DGNSILLASSSLDGTVKLW 139 (466)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCceeEEEEecc-------CCCceeeEEEEC-C------CcceEEeccCCCCccEEEE
Confidence 3445568888899999999997765 44444421 112344343311 0 233 4444444 8999999
Q ss_pred EccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC-CCeEEEEECCCceeeeeecCCCCCCCCcCCCCcee
Q 020454 139 SIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT 217 (326)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 217 (326)
++... ......-..+...|..+.++|++.++++++. |+.+++|++.....+..+..|. ..|.
T Consensus 140 ~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~ 202 (466)
T COG2319 140 DLSTP--------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT---------DPVS 202 (466)
T ss_pred EecCC--------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCC---------CceE
Confidence 97641 1122222345678889999999998888885 9999999999866666665533 5688
Q ss_pred eeEEeecCCCc-EEEEEeCCCeEEEEeCCCCCCcee-EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE-EE
Q 020454 218 SAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVM-SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LG 294 (326)
Q Consensus 218 ~~~~~p~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~-~~ 294 (326)
+++|+| ++. .+++++.|+.|++||.+.. ..+. .+..|.... ...|+|++.++++++.|+.+++|+++.... +.
T Consensus 203 ~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 278 (466)
T COG2319 203 SLAFSP--DGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR 278 (466)
T ss_pred EEEEcC--CcceEEEEecCCCcEEEEECCCC-cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE
Confidence 999996 443 5555589999999998854 4444 466666654 338999998889999999999999997664 44
Q ss_pred EEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 295 CFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 295 ~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
.+.+| ...|.++.|+|++..+++++.|+.
T Consensus 279 ~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~ 307 (466)
T COG2319 279 TLSGH-SSSVLSVAFSPDGKLLASGSSDGT 307 (466)
T ss_pred EEecC-CccEEEEEECCCCCEEEEeeCCCc
Confidence 45566 899999999998888888888854
No 197
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=4.7e-15 Score=112.10 Aligned_cols=156 Identities=14% Similarity=0.180 Sum_probs=115.3
Q ss_pred ceEEEEecCCcEEEEEcccccccccc-ccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecC
Q 020454 124 RTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (326)
Q Consensus 124 ~~l~~~~~~g~v~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 202 (326)
-.+++|.++|.+.+||++.......- ....+..=...+.++|.++.+.+.-..=++|+.+..+..|++...........
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence 46889999999999999875321110 01111111234578899999998666666889999999999874321111100
Q ss_pred CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcE
Q 020454 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (326)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v 282 (326)
. ..+.+ ..|..+..-| |++.+|+++.|++||+|..++. +|+..++.|...|.+++|+|+...+|+++.|++|
T Consensus 246 e----~~lkn-pGv~gvrIRp--D~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 246 E----ITLKN-PGVSGVRIRP--DGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred e----EEecC-CCccceEEcc--CCcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence 0 01111 2367778877 7789999999999999999998 7899999999999999999999999999999999
Q ss_pred EEEEC
Q 020454 283 ASVDI 287 (326)
Q Consensus 283 ~iwd~ 287 (326)
.+|++
T Consensus 318 SLWkL 322 (323)
T KOG0322|consen 318 SLWKL 322 (323)
T ss_pred Eeeec
Confidence 99986
No 198
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=8.7e-14 Score=116.07 Aligned_cols=277 Identities=15% Similarity=0.129 Sum_probs=182.2
Q ss_pred cccccCCCCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEec
Q 020454 3 RTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP 82 (326)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~ 82 (326)
+++++.++-.+.+.+++|...-.||+||+.. +...|..+-..+.+--.-..++-. .++.-..|++|.+-.-
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlan-------LSLKFERhlDae~V~feiLsDD~S--K~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLAN-------LSLKFERHLDAEVVDFEILSDDYS--KSVFLQNDRTIEFHAK 123 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEccc-------ceeeeeecccccceeEEEeccchh--hheEeecCceeeehhh
Confidence 3566777777889999999999999999983 444554444443333222222222 2566677888877543
Q ss_pred cccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCC
Q 020454 83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS 162 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (326)
-.......+.. .-..+.+.. ...-|+.++....|+-++++... -+.-+.. ..
T Consensus 124 ~G~hy~~RIP~-----------~GRDm~y~~--------~scDly~~gsg~evYRlNLEqGr--------fL~P~~~-~~ 175 (703)
T KOG2321|consen 124 YGRHYRTRIPK-----------FGRDMKYHK--------PSCDLYLVGSGSEVYRLNLEQGR--------FLNPFET-DS 175 (703)
T ss_pred cCeeeeeecCc-----------CCccccccC--------CCccEEEeecCcceEEEEccccc--------ccccccc-cc
Confidence 21111111221 112222211 23456666667776666665433 2222222 23
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCC--CCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK--NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~ 240 (326)
..++++.+++-..+|++|+.+|.|..||.+....+..+..... ..........|+++.|.- +|-.+++|+.+|.|.
T Consensus 176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d--~gL~~aVGts~G~v~ 253 (703)
T KOG2321|consen 176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD--DGLHVAVGTSTGSVL 253 (703)
T ss_pred ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC--CceeEEeeccCCcEE
Confidence 6899999999999999999999999999998765554432211 000111224699999974 577899999999999
Q ss_pred EEeCCCCCCceeEEe-ecCCceEEEEecCC--CCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEE
Q 020454 241 LYDTSAQRRPVMSFD-FRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (326)
Q Consensus 241 iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~--~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 317 (326)
|||+|+. +|+.... ....+|..+.|.+. +..+++ .....++|||-.+|+....+.. ...++.+++-|++.+++
T Consensus 254 iyDLRa~-~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 254 IYDLRAS-KPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFF 329 (703)
T ss_pred EEEcccC-CceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccc--cCCcCceeeecCCceEE
Confidence 9999987 5554433 44568999999776 344554 4456899999999999887773 56799999999998888
Q ss_pred EeccC
Q 020454 318 SCGFL 322 (326)
Q Consensus 318 s~s~D 322 (326)
++-.+
T Consensus 330 ~Ane~ 334 (703)
T KOG2321|consen 330 TANES 334 (703)
T ss_pred EecCC
Confidence 87544
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=5.1e-14 Score=109.37 Aligned_cols=235 Identities=14% Similarity=0.122 Sum_probs=166.2
Q ss_pred eeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454 60 DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (326)
Q Consensus 60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~ 139 (326)
++.++...+|++..+..|.||.....+.-...+.+ +.|+..+.++.+.+ ..+.|++|+.|..-++|.
T Consensus 17 Awn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-----s~Hd~~vtgvdWap--------~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 17 AWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-----SEHDKIVTGVDWAP--------KSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred eecCCCceEEeccCCceEEEEEecCCCCceeceeh-----hhhCcceeEEeecC--------CCCceeEccCCCCccccc
Confidence 44455557999999999999998777644444443 36778899988766 567999999999999998
Q ss_pred ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454 140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (326)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (326)
.... +....++.+.++ +...+++.|+|.++.||+|+....|.||-++..+.=+..+..+ ......|+++
T Consensus 84 ~~~~----~~WkptlvLlRi--NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik-----kPirStv~sl 152 (361)
T KOG1523|consen 84 QPSG----GTWKPTLVLLRI--NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK-----KPIRSTVTSL 152 (361)
T ss_pred cCCC----CeeccceeEEEe--ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC-----Cccccceeee
Confidence 7422 122334444443 5689999999999999999999999999887655443332222 1233579999
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEeCC-----CC--------C----CceeEEeecCCceEEEEecCCCCeEEEEcCCCcE
Q 020454 220 AFLSIDDHRKFVAGTNDHQVRLYDTS-----AQ--------R----RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (326)
Q Consensus 220 ~~~p~~~~~~l~~~~~dg~v~iwd~~-----~~--------~----~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v 282 (326)
.|+|+ +-+|++|+.|++.|+|... .. + +.+.++....+.+..+.|+|+|..|+=.+.|..+
T Consensus 153 dWhpn--nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 153 DWHPN--NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred eccCC--cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 99994 4589999999999999732 10 0 0123333456789999999999999988999999
Q ss_pred EEEECCCCe-EEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454 283 ASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 283 ~iwd~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
.+-|..... .+...... .-+..++.|-.+. .++.+|.|
T Consensus 231 ~~~da~~p~~~v~~~~~~-~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 231 SFVDAAGPSERVQSVATA-QLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred EEeecCCCchhccchhhc-cCCceeeEeecCC-ceeecCCC
Confidence 999987664 33333333 4567777775443 23344444
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.6e-13 Score=108.48 Aligned_cols=225 Identities=15% Similarity=0.137 Sum_probs=146.9
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~ 146 (326)
.++++..|..|++||-.. +....++. ..+..+.++++-+. ....++.++ .+.|.+|..+.....
T Consensus 112 ~fava~nddvVriy~kss-t~pt~Lks-------~sQrnvtclawRPl-------saselavgC-r~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS-TCPTKLKS-------VSQRNVTCLAWRPL-------SASELAVGC-RAGICIWSDSRTLNA 175 (445)
T ss_pred hhhhhccCcEEEEeccCC-CCCceecc-------hhhcceeEEEeccC-------Ccceeeeee-cceeEEEEcCccccc
Confidence 489999999999999855 33344443 33467888986541 123444444 455789987754322
Q ss_pred c----ccccceEEEEEccCCCceEEEEEcCCCCEEEEecC-CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454 147 A----ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (326)
Q Consensus 147 ~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (326)
. +...+...+.+.....+|++|.|.++|..+++++. |..|.|||..++..+.-.. +....++-+.|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~---------~glgg~slLkw 246 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP---------KGLGGFSLLKW 246 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc---------cCCCceeeEEE
Confidence 1 22344455666566678999999999999998885 4669999999876543321 11245778899
Q ss_pred eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCC--Ce-------
Q 020454 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRT--GK------- 291 (326)
Q Consensus 222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~--~~------- 291 (326)
+| ++.+|++++-|+..++|+...... ...+....+.|...+|+|+|++|+ +.+..-.++-..+.. +.
T Consensus 247 SP--dgd~lfaAt~davfrlw~e~q~wt-~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~ 323 (445)
T KOG2139|consen 247 SP--DGDVLFAATCDAVFRLWQENQSWT-KERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSI 323 (445)
T ss_pred cC--CCCEEEEecccceeeeehhcccce-ecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccc
Confidence 99 566999999999999996553322 233334456899999999999887 444333333222221 10
Q ss_pred ----EEEEEc------c--eecceEEEEEECCCCCEEEEe
Q 020454 292 ----LLGCFI------G--KCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 292 ----~~~~~~------~--~~~~~v~~l~~~p~~~~l~s~ 319 (326)
++..++ + -+-+++.+|+|+|.|.+||+.
T Consensus 324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence 011111 0 024578899999999999875
No 201
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=8e-14 Score=111.04 Aligned_cols=208 Identities=12% Similarity=0.070 Sum_probs=149.0
Q ss_pred CeEEEEecCCcEEEEeccccce----eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC--CcEEEEE
Q 020454 66 PLLAVARKNGLTDILNPLNGDL----RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK--GKASMRS 139 (326)
Q Consensus 66 ~~l~~g~~dg~i~i~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~--g~v~i~~ 139 (326)
..|+++-.+|.+.+|....+.. +..+.. + ..+..+...+ .....+++|+.. ..+.+||
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~--------g-~g~~~~r~~~-------~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT--------G-PGLYDVRQTD-------TDPYIVATGGKENINELKIWD 179 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeec--------C-CceeeeccCC-------CCCceEecCchhcccceeeee
Confidence 4688999999999999874432 112221 1 2233333322 123445558888 8899999
Q ss_pred ccccccccccccceEEEEEccCC----------CceEEEEEcCC--CCEEEEecCCCeEEEEECCCcee-eeeecCCCCC
Q 020454 140 IEVTKVSAESSCSTVKSWNVCAS----------GTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKN 206 (326)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~~~~~ 206 (326)
++.. .++|..+.. --++.+.|-+. ...||+++.-+.+++||.+.++. +..+...
T Consensus 180 le~~----------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~--- 246 (412)
T KOG3881|consen 180 LEQS----------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL--- 246 (412)
T ss_pred cccc----------eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc---
Confidence 8753 345554322 12567778776 68899999999999999997654 4443332
Q ss_pred CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (326)
Q Consensus 207 ~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd 286 (326)
...++++...| +++.++++..-+.+..||++.++-....+.+..+.|+++..+|...++++++-|+.|+|+|
T Consensus 247 ------E~~is~~~l~p--~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 247 ------ENPISSTGLTP--SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ------cCcceeeeecC--CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 13477888877 5669999999999999999987544445888889999999999999999999999999999
Q ss_pred CCCCeEEEEEcceecceEEEEEECCC
Q 020454 287 IRTGKLLGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 287 ~~~~~~~~~~~~~~~~~v~~l~~~p~ 312 (326)
+++.++++..- ....++.|-+.++
T Consensus 319 ~ktrkll~kvY--vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 319 IKTRKLLHKVY--VKSRLTFILLRDD 342 (412)
T ss_pred cccchhhhhhh--hhccccEEEecCC
Confidence 99977776543 2556777777553
No 202
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=6.2e-13 Score=116.16 Aligned_cols=278 Identities=13% Similarity=0.102 Sum_probs=169.2
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCC-CeEEEEecCCcEEEEeccccceeeeecc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAISN 93 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~i~~~~~~~~~~~~~~ 93 (326)
.+.+.+.....|+|+...++ ..+.... .+...+.......+... .++.+.+.+|.|++||...+++++.+..
T Consensus 28 ~k~l~~~~~~~V~VyS~~Tg-----~~i~~l~--~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 28 AKFLFLCTGNFVKVYSTATG-----ECITSLE--DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred CcEEEEeeCCEEEEEecchH-----hhhhhcc--cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 55666666778999999987 2222222 22233333444433332 5788999999999999999999888775
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCcEEEEEccccccccccccceEEEEEc------cCCCceE
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNV------CASGTIA 166 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~ 166 (326)
- .++..+.+.+.+. .....+ .+..+-.+ +....... ...+....+..... .....-.
T Consensus 101 ~---------~~v~~~~~~~~~a-----~~s~~~~~s~~~~~~-~~~~s~~~-~~q~~~~~~~t~~~~~~d~~~~~~~~~ 164 (792)
T KOG1963|consen 101 N---------LPVHALVYKPAQA-----DISANVYVSVEDYSI-LTTFSKKL-SKQSSRFVLATFDSAKGDFLKEHQEPK 164 (792)
T ss_pred C---------CceeEEEechhHh-----CccceeEeeccccee-eeeccccc-ccceeeeEeeeccccchhhhhhhcCCc
Confidence 2 2333333212211 111222 22222111 11111000 00000000000000 0011135
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (326)
Q Consensus 167 ~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~ 246 (326)
++..++.+.+.+.. .+..+.+|+..+..... ..+. ....|...+++.+++|+ +++++++..||+|.+|.--.
T Consensus 165 ~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~--~~~~---~~~~Htf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIV-HMCKIHIYFVPKHTKHT--SSRD---ITVHHTFNITCVALSPN--ERYLAAGDSDGRILVWRDFG 236 (792)
T ss_pred cEEEcCCceEEEEE-EeeeEEEEEecccceee--ccch---hhhhhcccceeEEeccc--cceEEEeccCCcEEEEeccc
Confidence 67777777776664 45578899987655211 1111 11223334788999994 56999999999999997322
Q ss_pred ---CCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454 247 ---QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 247 ---~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
.......+..|...|++++|+++|.+|++|+..|.+.+|.+.+++ .+-++. ..++|..+.++||+.+.+..-.|.
T Consensus 237 ~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPR-Lgs~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 237 SSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPR-LGSPILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred cccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccc-cCCeeEEEEEcCCCCeEEEEecCc
Confidence 112346677899999999999999999999999999999999988 222343 478999999999999888888886
Q ss_pred cC
Q 020454 324 AA 325 (326)
Q Consensus 324 ~~ 325 (326)
.+
T Consensus 315 qI 316 (792)
T KOG1963|consen 315 QI 316 (792)
T ss_pred eE
Confidence 53
No 203
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.4e-14 Score=120.22 Aligned_cols=230 Identities=13% Similarity=0.130 Sum_probs=156.5
Q ss_pred CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (326)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~ 128 (326)
.+..++-+ ..|..++.+|++|+.|-.+.|||....+.+..+.. +|...|.+..+.+.. .+..+++
T Consensus 48 GH~GCVN~--LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-------gHtaNIFsvKFvP~t------nnriv~s 112 (758)
T KOG1310|consen 48 GHTGCVNC--LEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST-------GHTANIFSVKFVPYT------NNRIVLS 112 (758)
T ss_pred cccceecc--eeecCCCCEEeecCCcceEEeecchhcceeeeeec-------ccccceeEEeeeccC------CCeEEEe
Confidence 34444443 45677788999999999999999988888888776 788889988877644 5678999
Q ss_pred EecCCcEEEEEcccccc--ccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCC
Q 020454 129 CTTKGKASMRSIEVTKV--SAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK 205 (326)
Q Consensus 129 ~~~~g~v~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~ 205 (326)
|..|..|+++|++.... .......+.+.|.. +...|..++..|++ +.+.++++||+|+-+|++....-........
T Consensus 113 gAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~ 191 (758)
T KOG1310|consen 113 GAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS 191 (758)
T ss_pred ccCcceEEEEecccccccccccCccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH
Confidence 99999999999985331 11112234556653 35678888898988 8999999999999999986321111000000
Q ss_pred CCCCc-CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-----------------ceeEEe-ecC--------
Q 020454 206 NSLGI-FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-----------------PVMSFD-FRE-------- 258 (326)
Q Consensus 206 ~~~~~-~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-----------------~~~~~~-~~~-------- 258 (326)
....+ .......++..+|. +..+|++|+.|-..++||.|...+ ++..+. .|-
T Consensus 192 ~l~ny~~~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 192 ILVNYNPQLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred HHHHhchhhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 00000 01124567888887 456999999999999999542211 122221 110
Q ss_pred C---ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE
Q 020454 259 T---PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC 295 (326)
Q Consensus 259 ~---~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~ 295 (326)
. -++-++|+|+|.-|++.-..-.|++||+..++....
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 1 256788999999888766666899999987765433
No 204
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=9.7e-14 Score=106.19 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=79.4
Q ss_pred CceeeeEEeecCCCcEEEE--EeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC---CCcEEEEECC
Q 020454 214 TWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIR 288 (326)
Q Consensus 214 ~~v~~~~~~p~~~~~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~---dg~v~iwd~~ 288 (326)
..|.+++|+|+ ++.|++ |..++.|.+||++ . .++..+ +...+..+.|+|+|++|++++. .|.|.+||.+
T Consensus 60 ~~I~~~~WsP~--g~~favi~g~~~~~v~lyd~~-~-~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 60 GPIHDVAWSPN--GNEFAVIYGSMPAKVTLYDVK-G-KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CceEEEEECcC--CCEEEEEEccCCcccEEEcCc-c-cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 45999999994 446554 4467899999997 3 445555 4567889999999999998764 4679999999
Q ss_pred CCeEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 289 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
+.+.+.++.. ..+..++|+|+|++|+++...
T Consensus 134 ~~~~i~~~~~---~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 134 KKKKISTFEH---SDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred CCEEeecccc---CcEEEEEEcCCCCEEEEEEec
Confidence 9999887763 257899999999999998753
No 205
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.60 E-value=1.3e-11 Score=103.69 Aligned_cols=241 Identities=12% Similarity=0.092 Sum_probs=137.3
Q ss_pred eeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEeccc-cceeeeecccC
Q 020454 18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLN-GDLRVAISNAG 95 (326)
Q Consensus 18 ~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~-~~~~~~~~~~~ 95 (326)
+++..++.|.+|++.. .+............. ...+.+ ++++++|+++. .++.|.+|++++ +.........
T Consensus 51 v~~~~~~~i~~~~~~~--~g~l~~~~~~~~~~~---p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~- 122 (330)
T PRK11028 51 VGVRPEFRVLSYRIAD--DGALTFAAESPLPGS---PTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII- 122 (330)
T ss_pred EEECCCCcEEEEEECC--CCceEEeeeecCCCC---ceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-
Confidence 3445678899999873 222222222111111 112333 34555666665 489999999964 3222222211
Q ss_pred CCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.+.....++.+.+ ++..++ +...++.|.+|+++.......... .............+.|+|++
T Consensus 123 -----~~~~~~~~~~~~p--------~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~---~~~~~~~g~~p~~~~~~pdg 186 (330)
T PRK11028 123 -----EGLEGCHSANIDP--------DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP---AEVTTVEGAGPRHMVFHPNQ 186 (330)
T ss_pred -----cCCCcccEeEeCC--------CCCEEEEeeCCCCEEEEEEECCCCcccccCC---CceecCCCCCCceEEECCCC
Confidence 1111233344333 445554 555679999999875321110000 11122234557789999999
Q ss_pred CEEEEecC-CCeEEEEECCC--ce--eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CCCeEEEEeCCCCC
Q 020454 175 KFSLFGGK-GVEVNVWDLDK--CE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQR 248 (326)
Q Consensus 175 ~~l~sg~~-d~~i~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~dg~v~iwd~~~~~ 248 (326)
++++++.. ++.|.+||+.. ++ .+..+...+.. ...+.+...+.++| ++++++++. .++.|.+|++....
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~i~~~p--dg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD---FSDTRWAADIHITP--DGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc---CCCCccceeEEECC--CCCEEEEecCCCCeEEEEEEeCCC
Confidence 99987766 89999999973 22 22222222111 11223455688888 566777774 47899999986442
Q ss_pred Cc---eeEEeecCCceEEEEecCCCCeEEEEcC-CCcEEEEECC
Q 020454 249 RP---VMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIR 288 (326)
Q Consensus 249 ~~---~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~ 288 (326)
.. +...... .....++++|+|++|+++.. +++|.+|++.
T Consensus 262 ~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 262 SVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 21 1222222 24567899999999997775 8899999875
No 206
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.9e-13 Score=109.16 Aligned_cols=240 Identities=14% Similarity=0.090 Sum_probs=165.0
Q ss_pred CCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee---eeecccCCCCCCCCCCCeeeeecccccccccCCCCceE
Q 020454 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR---VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l 126 (326)
+..++-++-|... +.+|++|+.|..+++|+++.--.. +.+.... ..|...|.+|.+-. ...++
T Consensus 55 H~GCiNAlqFS~N--~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~----~~H~SNIF~L~F~~--------~N~~~ 120 (609)
T KOG4227|consen 55 HTGCINALQFSHN--DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME----HPHRSNIFSLEFDL--------ENRFL 120 (609)
T ss_pred hccccceeeeccC--CeEEeecCCcceeeeechHHHHhhcCCCCceecc----CccccceEEEEEcc--------CCeeE
Confidence 4445556666544 779999999999999998632221 2222211 24557788898644 45689
Q ss_pred EEEecCCcEEEEEccccccccccccceEEEEEccC-CCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-e--eeeecC
Q 020454 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-K--IWTAKP 202 (326)
Q Consensus 127 ~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~--~~~~~~ 202 (326)
++|..+++|...|++..+ ++.++.... .+.|+.|..+|..+.|++.+.++.|.+||.+... . .+...+
T Consensus 121 ~SG~~~~~VI~HDiEt~q--------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 121 YSGERWGTVIKHDIETKQ--------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred ecCCCcceeEeeecccce--------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 999999999999988655 555555332 3579999999999999999999999999998644 1 111122
Q ss_pred CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec------CCceEEEEecCCCCeEEEE
Q 020454 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIG 276 (326)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~~i~~v~~s~~~~~l~~g 276 (326)
.+...+++.|+|. ...+|++.+..+-+.+||.+....++...... ...-..+.|+|+|+.+.+-
T Consensus 193 ---------~~~~F~t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 193 ---------SGKNFYTAEFHPE-TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred ---------CCccceeeeecCC-CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 2344668899996 56699999999999999999776665443321 2233567899999999876
Q ss_pred cCCCcEEEEECCCCeE-EEEEcce-----ecceEEEEEECCCCCEEEEeccC
Q 020454 277 NGSGDLASVDIRTGKL-LGCFIGK-----CSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 277 ~~dg~v~iwd~~~~~~-~~~~~~~-----~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
-....-.+||+.+.++ +.++... ....+.++.|.-+- -+++||.|
T Consensus 263 RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~ 313 (609)
T KOG4227|consen 263 RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDH 313 (609)
T ss_pred hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcc
Confidence 6666667788877544 3333311 02356778886544 47777754
No 207
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=3.9e-12 Score=99.00 Aligned_cols=210 Identities=13% Similarity=0.087 Sum_probs=142.0
Q ss_pred CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceE
Q 020454 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV 154 (326)
Q Consensus 75 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~ 154 (326)
..|.|||=...+.+.++... .+|.++..- .+.+ +.-..+.|++|.+..+. +.+
T Consensus 75 NkviIWDD~k~~~i~el~f~---------~~I~~V~l~----------r~ri-Vvvl~~~I~VytF~~n~-------k~l 127 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFN---------SEIKAVKLR----------RDRI-VVVLENKIYVYTFPDNP-------KLL 127 (346)
T ss_pred ceEEEEecccCcEEEEEEec---------cceeeEEEc----------CCeE-EEEecCeEEEEEcCCCh-------hhe
Confidence 47999996555555555542 678877752 2344 44456789999876432 244
Q ss_pred EEEEccC-CCceEEEEEcCCCCEEEE-ecCCCeEEEEECCCcee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE
Q 020454 155 KSWNVCA-SGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (326)
Q Consensus 155 ~~~~~~~-~~~v~~~~~~~~~~~l~s-g~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l 230 (326)
+.++... +..+.++.-+.+..+||. |-.-|.|+|-|+...+. ...+..|. ..|.+++... +|.++
T Consensus 128 ~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~---------s~Iacv~Ln~--~Gt~v 196 (346)
T KOG2111|consen 128 HVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHD---------SDIACVALNL--QGTLV 196 (346)
T ss_pred eeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEccc---------CceeEEEEcC--CccEE
Confidence 5555433 445666655555566665 45668999999876554 23344443 5677888875 67799
Q ss_pred EEEeCCCe-EEEEeCCCCCCceeEEee--cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe---E------------
Q 020454 231 VAGTNDHQ-VRLYDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---L------------ 292 (326)
Q Consensus 231 ~~~~~dg~-v~iwd~~~~~~~~~~~~~--~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~---~------------ 292 (326)
|++|..|+ |||||..++ ..+.++.- ....|.+++|||++.+|++++..|+++||.++... .
T Consensus 197 ATaStkGTLIRIFdt~~g-~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~l 275 (346)
T KOG2111|consen 197 ATASTKGTLIRIFDTEDG-TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVL 275 (346)
T ss_pred EEeccCcEEEEEEEcCCC-cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcccccccccccccc
Confidence 99999985 899999988 56777763 34579999999999999999999999999987522 1
Q ss_pred ---------EEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 293 ---------LGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 293 ---------~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
..+++-. .++..-++|-.+.+.++..+.||.
T Consensus 276 pky~~S~wS~~~f~l~-~~~~~~~~fg~~~nsvi~i~~Dgs 315 (346)
T KOG2111|consen 276 PKYFSSEWSFAKFQLP-QGTQCIIAFGSETNTVIAICADGS 315 (346)
T ss_pred chhcccceeEEEEEcc-CCCcEEEEecCCCCeEEEEEeCCc
Confidence 1112222 445556677766556666777764
No 208
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=2.4e-13 Score=104.04 Aligned_cols=127 Identities=16% Similarity=0.192 Sum_probs=93.7
Q ss_pred eEEEEEccCCCceEEEEEcCCCCEEEE--ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE
Q 020454 153 TVKSWNVCASGTIAFSKVDISEKFSLF--GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (326)
Q Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~l~s--g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l 230 (326)
.+....+...++|..++|+|+++.||+ |..+..|.+||++ ++.+..+.. ..+..+.|+| +|+++
T Consensus 50 ~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~-----------~~~n~i~wsP--~G~~l 115 (194)
T PF08662_consen 50 PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT-----------QPRNTISWSP--DGRFL 115 (194)
T ss_pred ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC-----------CCceEEEECC--CCCEE
Confidence 445555555667999999999987654 4467799999996 555555443 2356889999 56688
Q ss_pred EEEeC---CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC------CCcEEEEECCCCeEEEEEc
Q 020454 231 VAGTN---DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG------SGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 231 ~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~------dg~v~iwd~~~~~~~~~~~ 297 (326)
++++. .|.|.+||.++. +.+.+.+ ...++.++|+|+|++|+++.. |+.++||++. |+++.+..
T Consensus 116 ~~~g~~n~~G~l~~wd~~~~-~~i~~~~--~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 116 VLAGFGNLNGDLEFWDVRKK-KKISTFE--HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EEEEccCCCcEEEEEECCCC-EEeeccc--cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 88764 467999999965 4455543 345789999999999997764 7889999984 77766543
No 209
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.57 E-value=4.6e-13 Score=120.88 Aligned_cols=220 Identities=15% Similarity=0.170 Sum_probs=147.6
Q ss_pred EeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc
Q 020454 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV 159 (326)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~ 159 (326)
|+. .|.++..++ .|...+..++... .+..++++|+.||+|++|+........ ........|..
T Consensus 1034 W~p-~G~lVAhL~--------Ehs~~v~k~a~s~-------~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~rS~ltys~ 1096 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLH--------EHSSAVIKLAVSS-------EHTSLFVSGSDDGTVKVWNLRKLEGEG-GSARSELTYSP 1096 (1431)
T ss_pred CCc-cceEeehhh--------hccccccceeecC-------CCCceEEEecCCceEEEeeehhhhcCc-ceeeeeEEEec
Confidence 555 556655555 3334455555433 244799999999999999987644221 22233344553
Q ss_pred cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce--eeeeecCCCCCCCCcCCCC-ceeeeEEeecCCCcEEEEEeCC
Q 020454 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPT-WFTSAAFLSIDDHRKFVAGTND 236 (326)
Q Consensus 160 ~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~~l~~~~~d 236 (326)
....+.++..-+.++.+|+++.||.|++.++...+ ......... ..+..++ .|..-+|........++.++..
T Consensus 1097 -~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri---~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~ 1172 (1431)
T KOG1240|consen 1097 -EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRI---PNLKKDGVVVSMHAFTAIVQSHVLVYATDL 1172 (1431)
T ss_pred -cCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeec---ccccCCCceEEeecccccccceeEEEEEec
Confidence 36789999999999999999999999999987521 111100000 0011112 2333333322222378889999
Q ss_pred CeEEEEeCCCCCCceeE--EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC-
Q 020454 237 HQVRLYDTSAQRRPVMS--FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL- 313 (326)
Q Consensus 237 g~v~iwd~~~~~~~~~~--~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~- 313 (326)
+.|..||+++. .-... .....+.|++++.+|.+..++.|+..|.+.+||++-+.++..+.-....+|+.+..+|..
T Consensus 1173 ~~iv~~D~r~~-~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1173 SRIVSWDTRMR-HDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP 1251 (1431)
T ss_pred cceEEecchhh-hhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC
Confidence 99999999975 33333 334568899999999999999999999999999999999888764336789999888743
Q ss_pred --CEEEEecc
Q 020454 314 --PIIASCGF 321 (326)
Q Consensus 314 --~~l~s~s~ 321 (326)
...+++|.
T Consensus 1252 ~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1252 QESVSVSAGS 1261 (1431)
T ss_pred CCceEEEecc
Confidence 35555554
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=8e-14 Score=108.31 Aligned_cols=153 Identities=10% Similarity=0.117 Sum_probs=123.3
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCce---eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCe
Q 020454 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~ 238 (326)
.++|+|.+|++++..+|++-....|.||.....+ ....++.| ...|+.+.|.|. .+.|++|+.|..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H---------d~~vtgvdWap~--snrIvtcs~drn 78 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH---------DKIVTGVDWAPK--SNRIVTCSHDRN 78 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh---------CcceeEEeecCC--CCceeEccCCCC
Confidence 5689999999999999999999999999987665 33344433 356899999995 448999999999
Q ss_pred EEEEeCCCCC--CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE---EEEEcceecceEEEEEECCCC
Q 020454 239 VRLYDTSAQR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---LGCFIGKCSGSIRSIARHPTL 313 (326)
Q Consensus 239 v~iwd~~~~~--~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~---~~~~~~~~~~~v~~l~~~p~~ 313 (326)
-++|....+. +|...+.-++...++|.|+|.++.+++|+....|.||-++...- .+.++..+...|.+++|+|++
T Consensus 79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred ccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence 9999985332 35566667789999999999999999999999999998875432 112222237889999999999
Q ss_pred CEEEEeccCccC
Q 020454 314 PIIASCGFLEAA 325 (326)
Q Consensus 314 ~~l~s~s~D~~~ 325 (326)
-+|++||.|+..
T Consensus 159 VLlaaGs~D~k~ 170 (361)
T KOG1523|consen 159 VLLAAGSTDGKC 170 (361)
T ss_pred ceecccccCcce
Confidence 999999999864
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.3e-12 Score=113.14 Aligned_cols=236 Identities=13% Similarity=0.073 Sum_probs=142.6
Q ss_pred cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecC---CcEEEEeccccceeeeecccCCCCC
Q 020454 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGA 99 (326)
Q Consensus 23 ~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d---g~i~i~~~~~~~~~~~~~~~~~~~~ 99 (326)
+..|.+||..+. ... .+... ...+. +..++++++.|+..+.+ ..|.+||+.+++... +...
T Consensus 183 ~~~i~i~d~dg~--~~~----~lt~~--~~~v~--~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~----- 246 (429)
T PRK01742 183 PYEVRVADYDGF--NQF----IVNRS--SQPLM--SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASF----- 246 (429)
T ss_pred eEEEEEECCCCC--Cce----EeccC--CCccc--cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecC-----
Confidence 468899998765 111 22211 22222 33445667778877654 369999998776422 2211
Q ss_pred CCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE
Q 020454 100 QPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL 178 (326)
Q Consensus 100 ~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 178 (326)
. +......+.+ ++..|+.+ ..+|...+|.++... +.++... .+...+....|+|+++.|+
T Consensus 247 -~--g~~~~~~wSP--------DG~~La~~~~~~g~~~Iy~~d~~~-------~~~~~lt-~~~~~~~~~~wSpDG~~i~ 307 (429)
T PRK01742 247 -R--GHNGAPAFSP--------DGSRLAFASSKDGVLNIYVMGANG-------GTPSQLT-SGAGNNTEPSWSPDGQSIL 307 (429)
T ss_pred -C--CccCceeECC--------CCCEEEEEEecCCcEEEEEEECCC-------CCeEeec-cCCCCcCCEEECCCCCEEE
Confidence 0 1122344433 45566665 468877777654321 1122221 1234577899999998766
Q ss_pred Ee-cCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee
Q 020454 179 FG-GKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256 (326)
Q Consensus 179 sg-~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 256 (326)
.. ..++..+||++.... ....+ .+. . ....|+| +++.++..+.++ +.+||+.++. . ..+..
T Consensus 308 f~s~~~g~~~I~~~~~~~~~~~~l-~~~---------~--~~~~~Sp--DG~~ia~~~~~~-i~~~Dl~~g~-~-~~lt~ 370 (429)
T PRK01742 308 FTSDRSGSPQVYRMSASGGGASLV-GGR---------G--YSAQISA--DGKTLVMINGDN-VVKQDLTSGS-T-EVLSS 370 (429)
T ss_pred EEECCCCCceEEEEECCCCCeEEe-cCC---------C--CCccCCC--CCCEEEEEcCCC-EEEEECCCCC-e-EEecC
Confidence 54 467888888865321 11111 111 1 2356787 566887777665 5559998763 2 22221
Q ss_pred cCCceEEEEecCCCCeEEEEcCCCcEEEEEC--CCCeEEEEEcceecceEEEEEECCC
Q 020454 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDI--RTGKLLGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 257 ~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~--~~~~~~~~~~~~~~~~v~~l~~~p~ 312 (326)
. .....+.|+|+|++|+.++.+|...+|++ .+|+...++.+| .+.+...+|+|-
T Consensus 371 ~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~-~g~~~~p~wsp~ 426 (429)
T PRK01742 371 T-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS-DGQVKFPAWSPY 426 (429)
T ss_pred C-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC-CCCCCCcccCCC
Confidence 1 23356789999999999999998888876 368888888887 888999999984
No 212
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3.2e-14 Score=118.07 Aligned_cols=157 Identities=15% Similarity=0.270 Sum_probs=122.5
Q ss_pred cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeE
Q 020454 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (326)
Q Consensus 160 ~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v 239 (326)
.|.+.|++++|+.+|.+|++|+.|-.+.|||.-..+++..+... |...|.++.|.|..+.+.+++|..|..|
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg--------HtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTG--------HTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecc--------cccceeEEeeeccCCCeEEEeccCcceE
Confidence 45778999999999999999999999999999877776665432 2245889999998788899999999999
Q ss_pred EEEeCCC---------CCCceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeE----------EEEEcce
Q 020454 240 RLYDTSA---------QRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL----------LGCFIGK 299 (326)
Q Consensus 240 ~iwd~~~---------~~~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~----------~~~~~~~ 299 (326)
++||+.. .+.+...+.-|...|..++-.|++ +.+.++++||+++.+|++.... +..+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999884 223456666788899999999998 6777999999999999986321 1112122
Q ss_pred ecceEEEEEECCCC-CEEEEeccCccC
Q 020454 300 CSGSIRSIARHPTL-PIIASCGFLEAA 325 (326)
Q Consensus 300 ~~~~v~~l~~~p~~-~~l~s~s~D~~~ 325 (326)
.-...++..+|.. .+|+.|+.|-.|
T Consensus 200 -lielk~ltisp~rp~~laVGgsdpfa 225 (758)
T KOG1310|consen 200 -LIELKCLTISPSRPYYLAVGGSDPFA 225 (758)
T ss_pred -hheeeeeeecCCCCceEEecCCCchh
Confidence 2356689999965 578888887654
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=1.2e-11 Score=96.36 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=118.1
Q ss_pred CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECC-CceeeeeecCCCCCCCCcC
Q 020454 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~ 211 (326)
+.+.|||-..+ ..+..+.. ..+|..+.+.+ ..|++. .++.|.+|... +.+.++.+....
T Consensus 75 NkviIWDD~k~--------~~i~el~f--~~~I~~V~l~r--~riVvv-l~~~I~VytF~~n~k~l~~~et~~------- 134 (346)
T KOG2111|consen 75 NKVIIWDDLKE--------RCIIELSF--NSEIKAVKLRR--DRIVVV-LENKIYVYTFPDNPKLLHVIETRS------- 134 (346)
T ss_pred ceEEEEecccC--------cEEEEEEe--ccceeeEEEcC--CeEEEE-ecCeEEEEEcCCChhheeeeeccc-------
Confidence 46788882221 13333332 46788888875 334332 56799999987 445555443322
Q ss_pred CCCceeeeEEeecCCCcEEEE-EeCCCeEEEEeCCCCCC-ceeEEeecCCceEEEEecCCCCeEEEEcCCCc-EEEEECC
Q 020454 212 TPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LASVDIR 288 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~-~~~dg~v~iwd~~~~~~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~-v~iwd~~ 288 (326)
.|.... +..|..+..+||- |-.-|.|+|-|+...+. +-..+..|++.|.+++++.+|..+|+++..|+ |+|||..
T Consensus 135 NPkGlC--~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 135 NPKGLC--SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred CCCceE--eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence 112222 2333323334443 45679999999886533 34678899999999999999999999999998 8999999
Q ss_pred CCeEEEEEc-ceecceEEEEEECCCCCEEEEeccCcc
Q 020454 289 TGKLLGCFI-GKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 289 ~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
+|+++++++ |-....|.+|+|+|+..+||.+|.-|+
T Consensus 213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT 249 (346)
T KOG2111|consen 213 DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT 249 (346)
T ss_pred CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence 999999987 322557999999999999999887665
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=1.3e-13 Score=114.18 Aligned_cols=148 Identities=20% Similarity=0.205 Sum_probs=112.9
Q ss_pred cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC---
Q 020454 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--- 247 (326)
Q Consensus 171 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~--- 247 (326)
.|.+--+++|-.-|.+++.|.... .+..+.+... +.....|+++.|.|.+++ .+++.-.+|.+++||..-.
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r----~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~~~~~~ 255 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEER----LINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKEIVCGA 255 (636)
T ss_pred CCCCcceEEeeccCceEEecchhh-HHHHhhhhcc----cccccceEEEEEEeCCCc-eEEEEEecCceEEeeccccccC
Confidence 345666778888899999987652 2222222111 112357999999998665 7888888999999974210
Q ss_pred ------------------------CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecce
Q 020454 248 ------------------------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (326)
Q Consensus 248 ------------------------~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~ 303 (326)
+.|+..+...++.|...+|+|||++||+-+.||.++|||+.+.+++..++.- -+.
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY-FGG 334 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY-FGG 334 (636)
T ss_pred CCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh-ccc
Confidence 0145555566678999999999999999999999999999999888877764 778
Q ss_pred EEEEEECCCCCEEEEeccCccC
Q 020454 304 IRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 304 v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..+++|+||++||++||.|--+
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLV 356 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLV 356 (636)
T ss_pred eEEEEEcCCccEEEecCCcceE
Confidence 9999999999999999999643
No 215
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=4.1e-13 Score=108.06 Aligned_cols=197 Identities=13% Similarity=0.082 Sum_probs=132.3
Q ss_pred CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (326)
Q Consensus 63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~ 142 (326)
.++..|++|..||.+|||+......+.... .+.+.|.+|++.+ ++..|++.+.| ..++|+.+.
T Consensus 154 ~~gs~latgg~dg~lRv~~~Ps~~t~l~e~--------~~~~eV~DL~FS~--------dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 154 GDGSKLATGGTDGTLRVWEWPSMLTILEEI--------AHHAEVKDLDFSP--------DGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred CCCCEeeeccccceEEEEecCcchhhhhhH--------hhcCccccceeCC--------CCcEEEEecCC-ceEEEEecc
Confidence 445589999999999999965444333222 4558899999865 66688888888 999999876
Q ss_pred cccccccccceEEEEEccCCCceEEEEEcCCC-----CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCcee
Q 020454 143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISE-----KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT 217 (326)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 217 (326)
........+ ...+..+..++|..++ .+++.-..-+.|+.||+...+.-..++..+ .+.....|+
T Consensus 217 g~~~a~~t~-------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~----~~~~~~siS 285 (398)
T KOG0771|consen 217 GAALARKTP-------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK----KIKRFKSIS 285 (398)
T ss_pred CchhhhcCC-------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh----hhhccCcce
Confidence 532110000 1112345566676655 334444555667777764322110001000 011123578
Q ss_pred eeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 218 ~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
+++.++ +|++++.|+.||.|-|++..+.+.....-+.|...|+.+.|+|+.+++++-+.+....+..+.-
T Consensus 286 sl~VS~--dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 286 SLAVSD--DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eEEEcC--CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 888886 7889999999999999999877443344557889999999999999999988888888887754
No 216
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.52 E-value=5.2e-12 Score=99.39 Aligned_cols=257 Identities=9% Similarity=0.086 Sum_probs=154.6
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCC----------CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH----------SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN 84 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 84 (326)
-+|+||+..|.|-++.-.....+.......+..++ -.+-+..+.|....+...++....|.+|++|.+..
T Consensus 38 e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~e 117 (433)
T KOG1354|consen 38 ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRE 117 (433)
T ss_pred ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeec
Confidence 67999999999998876544222222222221111 11233356677777778899999999999998864
Q ss_pred cceeee-ecc-----------cCCCCC----------------CCCCCCeeeeecccccccccCCCCceEEEEecCCcEE
Q 020454 85 GDLRVA-ISN-----------AGDSGA----------------QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKAS 136 (326)
Q Consensus 85 ~~~~~~-~~~-----------~~~~~~----------------~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~ 136 (326)
...... +.. +..+.. ..|.-.|.++.. ..+...+....|=.|.
T Consensus 118 r~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~---------NsD~Et~lSADdLRIN 188 (433)
T KOG1354|consen 118 RGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISV---------NSDKETFLSADDLRIN 188 (433)
T ss_pred cccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeee---------cCccceEeeccceeee
Confidence 443220 000 000000 011111222221 1233344445566677
Q ss_pred EEEccccccccccccceEEEEEccCCC------ceEEEEEcCCC-CEEEEecCCCeEEEEECCCcee------eeeecCC
Q 020454 137 MRSIEVTKVSAESSCSTVKSWNVCASG------TIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK------IWTAKPP 203 (326)
Q Consensus 137 i~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~------~~~~~~~ 203 (326)
+|.++.. ++...+.++++.. -|++..|||.. ++++-.+..|+|++-|++.... ++.....
T Consensus 189 LWnlei~-------d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 189 LWNLEII-------DQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred ecccccc-------CCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 7776542 2344444544322 38899999976 7788888999999999985321 1211111
Q ss_pred CCCCCCc-CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC---------------ceEEEEec
Q 020454 204 PKNSLGI-FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET---------------PIKAVAEE 267 (326)
Q Consensus 204 ~~~~~~~-~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------------~i~~v~~s 267 (326)
+...-.+ ..-..|+.+.|++ +|+++++-. --+|++||+....+|+.+++.|+. .-..++|+
T Consensus 262 p~~rsffseiIsSISDvKFs~--sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s 338 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSH--SGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS 338 (433)
T ss_pred CcchhhHHHHhhhhhceEEcc--CCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence 1110000 0123688999997 566777654 478999999766688888887654 22456899
Q ss_pred CCCCeEEEEcCCCcEEEEECCCC
Q 020454 268 PDSFNIYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 268 ~~~~~l~~g~~dg~v~iwd~~~~ 290 (326)
.++.++++|+..+.+++|+...|
T Consensus 339 g~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 339 GNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CCcceEecccccceEEEecCCCC
Confidence 99999999999999999996543
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.6e-12 Score=111.37 Aligned_cols=206 Identities=9% Similarity=0.004 Sum_probs=126.7
Q ss_pred CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC---CcEEEEEccccccccccc
Q 020454 74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEVTKVSAESS 150 (326)
Q Consensus 74 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~---g~v~i~~~~~~~~~~~~~ 150 (326)
+..|.+||..... ...+. .+...+....+.+ ++..++..+.+ ..|++|++.....
T Consensus 183 ~~~i~i~d~dg~~-~~~lt--------~~~~~v~~p~wSP--------DG~~la~~s~~~~~~~i~i~dl~tg~~----- 240 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVN--------RSSQPLMSPAWSP--------DGSKLAYVSFENKKSQLVVHDLRSGAR----- 240 (429)
T ss_pred eEEEEEECCCCCC-ceEec--------cCCCccccceEcC--------CCCEEEEEEecCCCcEEEEEeCCCCce-----
Confidence 4689999985444 23332 2335566667655 55667666543 3688998754221
Q ss_pred cceEEEEEccCCCceEEEEEcCCCCEEEEec-CCCeEEEE--ECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC
Q 020454 151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVW--DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH 227 (326)
Q Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 227 (326)
..+. . ..+.....+|+|+++.|+.+. .++.+.|| |+.+++.. .+..+. ..+....|+| ++
T Consensus 241 -~~l~--~--~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~---------~~~~~~~wSp--DG 303 (429)
T PRK01742 241 -KVVA--S--FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS-QLTSGA---------GNNTEPSWSP--DG 303 (429)
T ss_pred -EEEe--c--CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE-eeccCC---------CCcCCEEECC--CC
Confidence 0111 1 122344689999999887754 67766555 66555432 222221 2355779998 55
Q ss_pred cEEEE-EeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEE
Q 020454 228 RKFVA-GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS 306 (326)
Q Consensus 228 ~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~ 306 (326)
+.|+. ...++...||++.........+ .+.. ...+|+|+|++|+..+.++ +.+||+.+++.......+ ...+
T Consensus 304 ~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~ 376 (429)
T PRK01742 304 QSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDES 376 (429)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCC
Confidence 55554 4467888888865332222222 2322 4578999999998877764 666999988764322222 3457
Q ss_pred EEECCCCCEEEEeccCccC
Q 020454 307 IARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 307 l~~~p~~~~l~s~s~D~~~ 325 (326)
+.|+|++++|+.++.|+..
T Consensus 377 ~~~sPdG~~i~~~s~~g~~ 395 (429)
T PRK01742 377 PSISPNGIMIIYSSTQGLG 395 (429)
T ss_pred ceECCCCCEEEEEEcCCCc
Confidence 8899999999999888754
No 218
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.52 E-value=1.1e-12 Score=103.05 Aligned_cols=261 Identities=13% Similarity=0.110 Sum_probs=162.3
Q ss_pred CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc-----eeeeecccCCCCCC-----CCCCCeeeeecccccccc
Q 020454 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSGAQ-----PEDDGIVGLHLFKRQREE 118 (326)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~i~~l~~~~~~~~~ 118 (326)
.+...+.++-+... +.+|++|..+|.|.+|.-+... +...++...+. .+ .-+..|..+.++.+.
T Consensus 23 teadiis~vef~~~--Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepE-FDYLkSleieEKinkIrw~~~~--- 96 (433)
T KOG1354|consen 23 TEADIISAVEFDHY--GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPE-FDYLKSLEIEEKINKIRWLDDG--- 96 (433)
T ss_pred chhcceeeEEeecc--cceEeecCCCCeEEEeecccccccceeeeeeeeccCcc-cchhhhhhhhhhhhhceecCCC---
Confidence 34455556666554 4489999999999999764322 22222221110 00 011334445555533
Q ss_pred cCCCCceEEEEecCCcEEEEEcccccccccc---------------------------ccceEEEEEccCCCceEEEEEc
Q 020454 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAES---------------------------SCSTVKSWNVCASGTIAFSKVD 171 (326)
Q Consensus 119 ~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~v~~~~~~ 171 (326)
....++..+.|.+|++|.+......... ...+.+++.-.|.-.|.+++++
T Consensus 97 ---n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 97 ---NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred ---CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence 3457888899999999998764431100 0112233333444468999999
Q ss_pred CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCC-CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 020454 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS-LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (326)
Q Consensus 172 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~ 250 (326)
.++..+++ ..|-.|.+|+++-....+.+-..+... ..+ ..-|++..|+|.. .++|+-.+..|+|++-|+|...-+
T Consensus 174 sD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeL--teVITsaEFhp~~-cn~f~YSSSKGtIrLcDmR~~aLC 249 (433)
T KOG1354|consen 174 SDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEEL--TEVITSAEFHPHH-CNVFVYSSSKGTIRLCDMRQSALC 249 (433)
T ss_pred CccceEee-ccceeeeeccccccCCceeEEEccccCHHHH--HHHHhhhccCHhH-ccEEEEecCCCcEEEeechhhhhh
Confidence 99988877 578899999998544333322111110 000 1237788999974 458898999999999999943111
Q ss_pred ---eeEEe------------ecCCceEEEEecCCCCeEEEEcCCCcEEEEECC-CCeEEEEEccee-----------cce
Q 020454 251 ---VMSFD------------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKC-----------SGS 303 (326)
Q Consensus 251 ---~~~~~------------~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~-~~~~~~~~~~~~-----------~~~ 303 (326)
...+. .--..|..+.|+++|+||++-+.- +|++||+. ..+++..++-|. ...
T Consensus 250 d~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 250 DAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred cchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 01111 112378899999999999986654 89999994 556777766551 112
Q ss_pred ---EEEEEECCCCCEEEEeccCc
Q 020454 304 ---IRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 304 ---v~~l~~~p~~~~l~s~s~D~ 323 (326)
-..++|+-++.+++|||...
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n 351 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNN 351 (433)
T ss_pred hhheeEEEEcCCcceEecccccc
Confidence 23568888888999998753
No 219
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.52 E-value=7.6e-14 Score=121.20 Aligned_cols=252 Identities=12% Similarity=0.093 Sum_probs=172.6
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
.++++|.+|-.+|||..++. ........+.....-++++ .+.-++++++.|..|++|.+..+..+..+.
T Consensus 203 ~~Iitgsdd~lvKiwS~et~-----~~lAs~rGhs~ditdlavs----~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr-- 271 (1113)
T KOG0644|consen 203 RYIITGSDDRLVKIWSMETA-----RCLASCRGHSGDITDLAVS----SNNTMIAAASNDKVIRVWRLPDGAPVSVLR-- 271 (1113)
T ss_pred ceEeecCccceeeeeeccch-----hhhccCCCCccccchhccc----hhhhhhhhcccCceEEEEecCCCchHHHHh--
Confidence 78999999999999998876 2221222222222212221 233368899999999999999998877666
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
+|++.|+++++.+ ..+.+.||++++||.+...... ..+-.+...+..+.++.+-..+
T Consensus 272 ------ghtgavtaiafsP------------~~sss~dgt~~~wd~r~~~~~y-----~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 272 ------GHTGAVTAIAFSP------------RASSSDDGTCRIWDARLEPRIY-----VPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred ------ccccceeeeccCc------------cccCCCCCceEecccccccccc-----CCCCCCcccccceeeeeccccc
Confidence 7889999999755 3378899999999977211000 0000111223456677777778
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
.-++||+.|+.-..|.+......... + ..++... +...+.++.-.+..+.+|++.++ +..+..
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~~~~~~---------l---if~t~ss----d~~~~~~~ar~~~~~~vwnl~~g-~l~H~l 391 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLAWRSNL---------L---IFVTRSS----DLSSIVVTARNDHRLCVWNLYTG-QLLHNL 391 (1113)
T ss_pred cccccccCCcccccchhhHhhhhccc---------e---EEEeccc----cccccceeeeeeeEeeeeecccc-hhhhhh
Confidence 88899999999988886532110000 0 0111111 11125677777889999999988 667888
Q ss_pred eecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEE
Q 020454 255 DFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (326)
Q Consensus 255 ~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s 318 (326)
.+|...+..+.++|-...++ +++.||...|||+-.|.+++.+... .+.+..-+|+++|..++.
T Consensus 392 ~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 392 MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIAL 455 (1113)
T ss_pred cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEec
Confidence 89999999999999877666 8999999999999999887766543 456667789988876653
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.51 E-value=7.3e-14 Score=113.65 Aligned_cols=253 Identities=12% Similarity=0.126 Sum_probs=173.7
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.++.|+..|.|-.+|+.++ ++...+. -.+.+..+.|..... ++|++. ..-+.|||- .|..+..+...
T Consensus 142 rhlllgGrKGHlAa~Dw~t~-----~L~~Ei~---v~Etv~Dv~~LHneq--~~AVAQ-K~y~yvYD~-~GtElHClk~~ 209 (545)
T KOG1272|consen 142 RHLLLGGRKGHLAAFDWVTK-----KLHFEIN---VMETVRDVTFLHNEQ--FFAVAQ-KKYVYVYDN-NGTELHCLKRH 209 (545)
T ss_pred cEEEecCCccceeeeecccc-----eeeeeee---hhhhhhhhhhhcchH--HHHhhh-hceEEEecC-CCcEEeehhhc
Confidence 34888999999999999987 5543332 122233344443333 455554 477899997 45544555532
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
..+..|.+.+ ..-.|++++..|.+..-|+.....+... +. ..+.+..|..+|-+
T Consensus 210 ---------~~v~rLeFLP--------yHfLL~~~~~~G~L~Y~DVS~GklVa~~--------~t-~~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 210 ---------IRVARLEFLP--------YHFLLVAASEAGFLKYQDVSTGKLVASI--------RT-GAGRTDVMKQNPYN 263 (545)
T ss_pred ---------Cchhhhcccc--------hhheeeecccCCceEEEeechhhhhHHH--------Hc-cCCccchhhcCCcc
Confidence 5677788877 3347888899999998898765533221 11 13567788889988
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
-.+-+|..+|+|.+|.....+++.++..|. ..|.++++.+ +|++++|.+.|..++|||+|...+ ++++
T Consensus 264 aVih~GhsnGtVSlWSP~skePLvKiLcH~---------g~V~siAv~~--~G~YMaTtG~Dr~~kIWDlR~~~q-l~t~ 331 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSKEPLVKILCHR---------GPVSSIAVDR--GGRYMATTGLDRKVKIWDLRNFYQ-LHTY 331 (545)
T ss_pred ceEEEcCCCceEEecCCCCcchHHHHHhcC---------CCcceEEECC--CCcEEeecccccceeEeeeccccc-ccee
Confidence 999999999999999999888887765544 7799999987 678999999999999999998754 5555
Q ss_pred eecCCceEEEEecCCCCeEEEEcCCCcEEEEECC-CC--eEEEEEcce-ecceEEEEEECCCCCEEEEec
Q 020454 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TG--KLLGCFIGK-CSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~-~~--~~~~~~~~~-~~~~v~~l~~~p~~~~l~s~s 320 (326)
.. ..+...+++|..| .|| .+....|.||.=. .+ ..-..+..| +.++|..|.|+|-..+|-.|-
T Consensus 332 ~t-p~~a~~ls~Sqkg-lLA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 332 RT-PHPASNLSLSQKG-LLA-LSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred ec-CCCcccccccccc-cee-eecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 44 4567788887655 344 4455589999522 21 111112222 356899999999766665543
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.6e-12 Score=101.68 Aligned_cols=182 Identities=9% Similarity=0.052 Sum_probs=126.9
Q ss_pred CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCc----ee
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKC----EK 196 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~----~~ 196 (326)
+-..++++..|..|++|+-+.. ...+..-..+..|.|++|-|.+ ..|++|+. +.|+||..... +.
T Consensus 109 H~~~fava~nddvVriy~ksst---------~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 109 HIIAFAVATNDDVVRIYDKSST---------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRN 178 (445)
T ss_pred hhhhhhhhccCcEEEEeccCCC---------CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccc
Confidence 3457888999999999985431 2233333446789999999975 67777765 46899987642 22
Q ss_pred eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEE
Q 020454 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI 275 (326)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~ 275 (326)
+.....+..+.+...-..+|++++|.+ ++..+++++ .|..|.|||+.++ ..+.-....-+.++-+.||||+.+|++
T Consensus 179 ~~~~s~~~~qvl~~pgh~pVtsmqwn~--dgt~l~tAS~gsssi~iWdpdtg-~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGHNPVTSMQWNE--DGTILVTASFGSSSIMIWDPDTG-QKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccchhheeCCCCceeeEEEEcC--CCCEEeecccCcceEEEEcCCCC-CcccccccCCCceeeEEEcCCCCEEEE
Confidence 222333433333333335899999987 566788776 4678999999976 322222344567888999999999999
Q ss_pred EcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEE
Q 020454 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (326)
Q Consensus 276 g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 317 (326)
++-|+..++|......-...+... .+.|....|+|+|.+|.
T Consensus 256 At~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLL 296 (445)
T ss_pred ecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEE
Confidence 999999999966544333334433 67999999999998654
No 222
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.50 E-value=2.1e-11 Score=93.99 Aligned_cols=226 Identities=14% Similarity=0.159 Sum_probs=143.5
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~ 146 (326)
.++.+-.+|.|.+|.....+....+..+. .+......-.++.+.. .+..+++.-.+|.+.+-+...
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls--~~ki~~~~~lslD~~~--------~~~~i~vs~s~G~~~~v~~t~---- 152 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLS--SKKISVVEALSLDIST--------SGTKIFVSDSRGSISGVYETE---- 152 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccc--hhhhhheeeeEEEeec--------cCceEEEEcCCCcEEEEecce----
Confidence 47778888999999875433322222110 0000001111233221 345688888888887444221
Q ss_pred cccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454 147 AESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (326)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 224 (326)
..-..+..|+. +.-++...+|+... +++.+||.|+.+..||++. ++.++. +. ..|...|.++.-+|.
T Consensus 153 --~~le~vq~wk~-He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~--n~------kvH~~GV~SI~ss~~ 221 (339)
T KOG0280|consen 153 --MVLEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH--NS------KVHTSGVVSIYSSPP 221 (339)
T ss_pred --eeeeecccccc-cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee--cc------eeeecceEEEecCCC
Confidence 12234445664 34567777777544 8999999999999999993 333443 11 113356888888876
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCC-eEEEEcCCCcEEEEECCCC--e---EEEEEcc
Q 020454 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG--K---LLGCFIG 298 (326)
Q Consensus 225 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~g~~dg~v~iwd~~~~--~---~~~~~~~ 298 (326)
.+.++++|+.|-.|++||.|+..+|+..-... +.|..+.++|.-. .++.++.-+-.+|-+...+ + .+..++.
T Consensus 222 -~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~ 299 (339)
T KOG0280|consen 222 -KPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-GGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKI 299 (339)
T ss_pred -CCceEEEeccccceeeeehhcccCccccCccc-cceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccc
Confidence 55699999999999999999877887665544 7899999999632 3333344445677776643 3 3445566
Q ss_pred eecceEEEEEECCCCCEEEEec
Q 020454 299 KCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 299 ~~~~~v~~l~~~p~~~~l~s~s 320 (326)
| .+-+..-+|.....+||||+
T Consensus 300 h-dSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 300 H-DSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred c-cceeeccccccccceeeeee
Confidence 6 77777788866666899986
No 223
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.48 E-value=2.2e-11 Score=108.57 Aligned_cols=185 Identities=14% Similarity=0.055 Sum_probs=138.7
Q ss_pred CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 201 (326)
.+..++.++.++.+.+|+......+..........+ ....-+-.+++.-++++|+.-+.|.+|+....+....+.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l-----~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTL-----YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEE-----EeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 567899999999999999765443222111111110 022233456667889999999999999987333222344
Q ss_pred CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCc
Q 020454 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD 281 (326)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~ 281 (326)
+|. ..+.++.++- ++.++++.|.|.++|+|++.+.+......-+|...+..++|.|+ .+++++.|-+
T Consensus 173 GHe---------G~iF~i~~s~--dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct 239 (967)
T KOG0974|consen 173 GHE---------GSIFSIVTSL--DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT 239 (967)
T ss_pred ccC---------CceEEEEEcc--CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE
Confidence 443 5567777775 77899999999999999999875444344578999999999988 9999999999
Q ss_pred EEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 282 v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.++|+.. ++.+..+.+|....|+.++..++..+++|++.|+..
T Consensus 240 crvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 240 CRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred EEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcch
Confidence 9999765 566668988877789999999999999999999975
No 224
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.48 E-value=7.8e-11 Score=99.20 Aligned_cols=277 Identities=12% Similarity=0.070 Sum_probs=156.4
Q ss_pred eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEeccccceeeeecccC
Q 020454 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNAG 95 (326)
Q Consensus 17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~~~~~~~~~~~~ 95 (326)
+.+.+.+|.|.++|+.+. +++.+...... ..+..-+.++++++++. .++.+.++|.++.+.+..+..-.
T Consensus 51 ~yv~~rdg~vsviD~~~~-----~~v~~i~~G~~-----~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 51 LYVANRDGTVSVIDLATG-----KVVATIKVGGN-----PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp EEEEETTSEEEEEETTSS-----SEEEEEE-SSE-----EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred EEEEcCCCeEEEEECCcc-----cEEEEEecCCC-----cceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccc
Confidence 555667899999999988 56555543332 22233346677787765 68999999999988887765421
Q ss_pred CCCCCCCCCCeeeeecccccccccCCCCc-eEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 96 DSGAQPEDDGIVGLHLFKRQREESSSRSR-TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.+. ......+.++...+ ... .+++.-+.+.|.+.|+.... .+..-............++|++
T Consensus 121 ~~~-~~~~~Rv~aIv~s~--------~~~~fVv~lkd~~~I~vVdy~d~~--------~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 121 MPV-DGPESRVAAIVASP--------GRPEFVVNLKDTGEIWVVDYSDPK--------NLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp E-T-TTS---EEEEEE-S--------SSSEEEEEETTTTEEEEEETTTSS--------CEEEEEEE--TTEEEEEE-TTS
T ss_pred ccc-cccCCCceeEEecC--------CCCEEEEEEccCCeEEEEEecccc--------ccceeeecccccccccccCccc
Confidence 110 01223455454322 233 45555556877777755432 2222223335678889999999
Q ss_pred CEEEE-ecCCCeEEEEECCCceeeeeecCCCCC----CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454 175 KFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKN----SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (326)
Q Consensus 175 ~~l~s-g~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~ 249 (326)
++++. ...++.|-++|..+++.+..+...... ...+.|+. .+..|.....+...++.-....+.+||.... +
T Consensus 184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~--~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-k 260 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG--FGPVWATSGLGYFAIPLIGTDPVSVHDDYAW-K 260 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT--TEEEEEEEBSSSSEEEEEE--TTT-STTTBT-S
T ss_pred ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC--cceEEeeccccceecccccCCccccchhhcC-e
Confidence 88765 456778999999998776654322111 11111221 1222332222223323333445667888877 6
Q ss_pred ceeEEeecCCceEEEEecCCCCeEEEE----cCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 250 PVMSFDFRETPIKAVAEEPDSFNIYIG----NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g----~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
.++++.....+ ..+..+|+++++++. ...+.|.++|.++.+....+.......+..+.|+++|+.+..+..|+.
T Consensus 261 vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 261 VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp EEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred EEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 78888887666 677889999999987 555899999999998888776321335999999999998877766653
No 225
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.44 E-value=2.7e-10 Score=97.47 Aligned_cols=261 Identities=13% Similarity=0.071 Sum_probs=149.1
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-++++++.+|.+..+|..++ ++.-++.-+..... ... ..+..+++++.+|.|..+|..+|+.+......
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG-----~~~W~~~~~~~~~~--~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 134 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETG-----KRLWRVDLDERLSG--GVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS 134 (377)
T ss_pred CEEEEECCCCeEEEEEccCC-----cEeeeecCCCCccc--ceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC
Confidence 57888999999999998877 44222221211111 111 12346889999999999999999886655431
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc--------------------------ccc
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--------------------------SAE 148 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~--------------------------~~~ 148 (326)
+.+.+.... .++.++.+..+|.++.+|.+.... ..+
T Consensus 135 ---------~~~~~~p~v---------~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~ 196 (377)
T TIGR03300 135 ---------SEVLSPPLV---------ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVG 196 (377)
T ss_pred ---------ceeecCCEE---------ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEE
Confidence 111111100 234666677777777777543211 001
Q ss_pred cccceEEEEEccCCCceEEEEE-----------------cC--CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454 149 SSCSTVKSWNVCASGTIAFSKV-----------------DI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG 209 (326)
Q Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~-----------------~~--~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 209 (326)
..++.+..++...+..+....+ +| .+..+++++.++.+..||.++++.++......
T Consensus 197 ~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----- 271 (377)
T TIGR03300 197 FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS----- 271 (377)
T ss_pred CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-----
Confidence 1122333333322222211110 11 23456666677788888888777776644210
Q ss_pred cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
...... .+..+++++.+|.+..+|..++ +.+.+... ......+... .+..|++++.+|.|+++|..
T Consensus 272 ------~~~p~~----~~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 272 ------YQGPAV----DDNRLYVTDADGVVVALDRRSG-SELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred ------ccCceE----eCCEEEEECCCCeEEEEECCCC-cEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 011111 2337888888999999999877 44444421 2122222222 46789999999999999999
Q ss_pred CCeEEEEEcceecceEEE-EEECCCCCEEEEeccCccC
Q 020454 289 TGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 289 ~~~~~~~~~~~~~~~v~~-l~~~p~~~~l~s~s~D~~~ 325 (326)
+++.+.+++.+ ...+.. ..+ .++ .|+.++.||.+
T Consensus 339 tG~~~~~~~~~-~~~~~~sp~~-~~~-~l~v~~~dG~l 373 (377)
T TIGR03300 339 DGSFVARLKTD-GSGIASPPVV-VGD-GLLVQTRDGDL 373 (377)
T ss_pred CCCEEEEEEcC-CCccccCCEE-ECC-EEEEEeCCceE
Confidence 99999888865 433332 233 233 57788888853
No 226
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.43 E-value=4.1e-11 Score=100.69 Aligned_cols=178 Identities=11% Similarity=0.099 Sum_probs=133.8
Q ss_pred CCceEEEEecCCcEEEEEcccccc-------ccccccceEEEEEccCCCc---eEEEE----EcCCCCEEEEecCCCeEE
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKV-------SAESSCSTVKSWNVCASGT---IAFSK----VDISEKFSLFGGKGVEVN 187 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~---v~~~~----~~~~~~~l~sg~~d~~i~ 187 (326)
...+++....||.+++|+...+.. ...+..++...|.+..... ..++. .+.+...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 345788899999999999876543 1122334444555321111 11111 111346778899999999
Q ss_pred EEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEec
Q 020454 188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (326)
Q Consensus 188 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s 267 (326)
+|++..++..+.+.... |+..|.++.++.. -..|.+++.|+.+..|+.... +.+..+......+.+++++
T Consensus 84 ~ys~~~g~it~~~st~~-------h~~~v~~~~~~~~--~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is 153 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDK-------HYGNVNEILDAQR--LGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCIS 153 (541)
T ss_pred EEEecCCeEEEEEecCC-------CCCcceeeecccc--cCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEc
Confidence 99999999888766422 3456788887653 338999999999999999976 5677888888889999999
Q ss_pred CCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454 268 PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 268 ~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~ 312 (326)
|||..+++++. .|++||+++++.+..|.|| .++|+++.|.-.
T Consensus 154 ~D~~~l~~as~--~ik~~~~~~kevv~~ftgh-~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 154 PDGKILLTASR--QIKVLDIETKEVVITFTGH-GSPVRTLSFTTL 195 (541)
T ss_pred CCCCEEEeccc--eEEEEEccCceEEEEecCC-CcceEEEEEEEe
Confidence 99999998765 7999999999999999998 999999999865
No 227
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.3e-10 Score=102.03 Aligned_cols=186 Identities=12% Similarity=0.071 Sum_probs=129.0
Q ss_pred CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC--cee--e
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--CEK--I 197 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~--~~~--~ 197 (326)
....+.....+..+++|............+- ...|...+.+.++||+++++|+|..||.|.+|.--. ... .
T Consensus 170 ~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~-----~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~ 244 (792)
T KOG1963|consen 170 NSGEFKGIVHMCKIHIYFVPKHTKHTSSRDI-----TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETC 244 (792)
T ss_pred CCceEEEEEEeeeEEEEEecccceeeccchh-----hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccc
Confidence 3456666677778888887764322221111 123444589999999999999999999999997432 110 1
Q ss_pred eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc
Q 020454 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (326)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~ 277 (326)
..++- |...|++++|++ +|.+|++|+..+.+.+|.+.++++ +-+.--.++|..+.++||+.+.+...
T Consensus 245 t~lHW---------H~~~V~~L~fS~--~G~~LlSGG~E~VLv~Wq~~T~~k--qfLPRLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 245 TLLHW---------HHDEVNSLSFSS--DGAYLLSGGREGVLVLWQLETGKK--QFLPRLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred eEEEe---------cccccceeEEec--CCceEeecccceEEEEEeecCCCc--ccccccCCeeEEEEEcCCCCeEEEEe
Confidence 11111 335689999998 677999999999999999998742 33334568999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEEcce----------ecceEEEEEECCCCCEEEEeccCccC
Q 020454 278 GSGDLASVDIRTGKLLGCFIGK----------CSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 278 ~dg~v~iwd~~~~~~~~~~~~~----------~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.|+.|.+....+.+....+.+- ..+-.+.+.++|.-+.++-.+.-|++
T Consensus 312 ~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~v 369 (792)
T KOG1963|consen 312 EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHV 369 (792)
T ss_pred cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceE
Confidence 9999999988765443333321 13345667788855566666665554
No 228
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.41 E-value=1.6e-10 Score=98.84 Aligned_cols=227 Identities=12% Similarity=0.104 Sum_probs=144.7
Q ss_pred ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec-----ccCCCC
Q 020454 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS-----NAGDSG 98 (326)
Q Consensus 24 G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~-----~~~~~~ 98 (326)
..+.++|.+.+ .+.+... .+...+.++. ++.+++++++|+.|..|.+|+..-...++-.+ ++...+
T Consensus 33 ~rlliyD~ndG-----~llqtLK--gHKDtVycVA--ys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP 103 (1081)
T KOG1538|consen 33 SRLLVYDTSDG-----TLLQPLK--GHKDTVYCVA--YAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNP 103 (1081)
T ss_pred CEEEEEeCCCc-----ccccccc--cccceEEEEE--EccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCc
Confidence 36789999887 4444444 3444444444 45567799999999999999875322211110 000000
Q ss_pred ----------------------C--CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceE
Q 020454 99 ----------------------A--QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV 154 (326)
Q Consensus 99 ----------------------~--~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~ 154 (326)
+ +.....+.+.+|.+ ++.+++.|-.+|+|.+.+-..++ .+
T Consensus 104 ~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtn--------DGqylalG~~nGTIsiRNk~gEe--------k~ 167 (1081)
T KOG1538|consen 104 ITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTN--------DGQYLALGMFNGTISIRNKNGEE--------KV 167 (1081)
T ss_pred hHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecC--------CCcEEEEeccCceEEeecCCCCc--------ce
Confidence 0 01122344444433 55667777788888777533222 33
Q ss_pred EEEEcc-CCCceEEEEEcCCC-----CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc
Q 020454 155 KSWNVC-ASGTIAFSKVDISE-----KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (326)
Q Consensus 155 ~~~~~~-~~~~v~~~~~~~~~-----~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 228 (326)
++-+.. ...+|.+++|+|.. ..+++.....++..|.+. ++.+-+-+....+ ..++++.| +|.
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~Fd---------P~CisYf~--NGE 235 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFD---------PCCISYFT--NGE 235 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCC---------chhheecc--CCc
Confidence 333322 35689999999963 567777777777777764 3333332222211 23667777 566
Q ss_pred EEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 229 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
+++.|+.|+.+++|--. + -.+.++-..+.+|+.++..|++++++.|+.||+|..|++..
T Consensus 236 y~LiGGsdk~L~~fTR~-G-vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFTRD-G-VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEEccCCCceEEEeec-C-eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 99999999999999754 3 23556656778999999999999999999999999998764
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.40 E-value=3.8e-12 Score=99.65 Aligned_cols=214 Identities=14% Similarity=0.078 Sum_probs=140.5
Q ss_pred CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCce-EEEEecCCcEEEEEc
Q 020454 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT-LLTCTTKGKASMRSI 140 (326)
Q Consensus 62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~-l~~~~~~g~v~i~~~ 140 (326)
++.++++|+.+.- .+.|-|.++-++...+..+ ..|..+.+.. +... +-..+.++.|.+|++
T Consensus 17 Sp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---------dki~yieW~a--------ds~~ilC~~yk~~~vqvwsl 78 (447)
T KOG4497|consen 17 SPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---------DKIVYIEWKA--------DSCHILCVAYKDPKVQVWSL 78 (447)
T ss_pred CCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---------HHhhheeeec--------cceeeeeeeeccceEEEEEe
Confidence 3556688888776 7778888777765555543 3455555433 3333 445577889999998
Q ss_pred cccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454 141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (326)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (326)
...+. ..++ + ..+..+..+.|+|+| .+|.+..-+-.|.+|.+.+.+....- +++ ..+..+
T Consensus 79 ~Qpew-------~ckI-d-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK--------~~~kg~ 139 (447)
T KOG4497|consen 79 VQPEW-------YCKI-D-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPK--------TNVKGY 139 (447)
T ss_pred eccee-------EEEe-c-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccc--------cCceeE
Confidence 76552 1111 1 235678999999999 56677778999999999887664431 111 135678
Q ss_pred EEeecCCCcEEEEEeCCCe---EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454 220 AFLSIDDHRKFVAGTNDHQ---VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF 296 (326)
Q Consensus 220 ~~~p~~~~~~l~~~~~dg~---v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~ 296 (326)
+|+| ++++.+.+++-.- +.|...... ..+..+....-..+.+.|+|||+.|++ ||---.-.+..+
T Consensus 140 ~f~~--dg~f~ai~sRrDCkdyv~i~~c~~W-~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aY 207 (447)
T KOG4497|consen 140 AFHP--DGQFCAILSRRDCKDYVQISSCKAW-ILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAY 207 (447)
T ss_pred EECC--CCceeeeeecccHHHHHHHHhhHHH-HHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeee
Confidence 9988 6767777664321 111111111 234556666667889999999988775 554322233333
Q ss_pred cceecceEEEEEECCCCCEEEEeccCccCC
Q 020454 297 IGKCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 297 ~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
. ..-.+..++|+|.+++|+.|+.|++.+
T Consensus 208 e--~~lG~k~v~wsP~~qflavGsyD~~lr 235 (447)
T KOG4497|consen 208 E--RGLGLKFVEWSPCNQFLAVGSYDQMLR 235 (447)
T ss_pred e--eccceeEEEeccccceEEeeccchhhh
Confidence 3 356799999999999999999998764
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.4e-10 Score=100.52 Aligned_cols=205 Identities=12% Similarity=0.042 Sum_probs=119.5
Q ss_pred CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC---CcEEEEEcccccccccccc
Q 020454 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEVTKVSAESSC 151 (326)
Q Consensus 75 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~---g~v~i~~~~~~~~~~~~~~ 151 (326)
..|.++|.. +.....+. .+...+....+.+ ++..++..+.. ..|++|++....
T Consensus 176 ~~L~~~D~d-G~~~~~l~--------~~~~~v~~p~wSP--------DG~~la~~s~~~~~~~I~~~dl~~g~------- 231 (427)
T PRK02889 176 YQLQISDAD-GQNAQSAL--------SSPEPIISPAWSP--------DGTKLAYVSFESKKPVVYVHDLATGR------- 231 (427)
T ss_pred cEEEEECCC-CCCceEec--------cCCCCcccceEcC--------CCCEEEEEEccCCCcEEEEEECCCCC-------
Confidence 356677763 33323322 1224555566544 45566655532 358888875432
Q ss_pred ceEEEEEccCCCceEEEEEcCCCCEEE-EecCCCeEEEEEC--CCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc
Q 020454 152 STVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDL--DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (326)
Q Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 228 (326)
..++-. ..+.....+|+|+++.|+ +.+.++...||.+ ..+. ...+..+. .......|+| +++
T Consensus 232 -~~~l~~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~---------~~~~~~~wSp--DG~ 296 (427)
T PRK02889 232 -RRVVAN--FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS---------GIDTEPFFSP--DGR 296 (427)
T ss_pred -EEEeec--CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC---------CCCcCeEEcC--CCC
Confidence 111211 134556889999998776 5677777666654 3333 22222211 1234568988 566
Q ss_pred EEEEEe-CCCeEEEEeC--CCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC---cEEEEECCCCeEEEEEcceecc
Q 020454 229 KFVAGT-NDHQVRLYDT--SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSG 302 (326)
Q Consensus 229 ~l~~~~-~dg~v~iwd~--~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg---~v~iwd~~~~~~~~~~~~~~~~ 302 (326)
.|+..+ .++...+|.+ ..+ . ...+..........+|+|+|++|+..+.++ .|.+||+.+++... +.. ..
T Consensus 297 ~l~f~s~~~g~~~Iy~~~~~~g-~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~--~~ 371 (427)
T PRK02889 297 SIYFTSDRGGAPQIYRMPASGG-A-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD--TT 371 (427)
T ss_pred EEEEEecCCCCcEEEEEECCCC-c-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC--CC
Confidence 666544 3456666654 433 2 333333333445678999999998666544 59999999887543 322 22
Q ss_pred eEEEEEECCCCCEEEEeccCc
Q 020454 303 SIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 303 ~v~~l~~~p~~~~l~s~s~D~ 323 (326)
......|+|+++.|+.++.++
T Consensus 372 ~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 372 RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CccCceECCCCCEEEEEEecC
Confidence 346789999999888877654
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=7e-10 Score=96.10 Aligned_cols=205 Identities=8% Similarity=0.025 Sum_probs=123.5
Q ss_pred cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe---cCCcEEEEEccccccccccccc
Q 020454 76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---TKGKASMRSIEVTKVSAESSCS 152 (326)
Q Consensus 76 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~---~~g~v~i~~~~~~~~~~~~~~~ 152 (326)
.|.++|...... ..+. .+...+....+.+ ++..++..+ .+..+++|++....
T Consensus 180 ~l~~~d~dg~~~-~~lt--------~~~~~~~~p~wSP--------DG~~la~~s~~~g~~~i~i~dl~~G~-------- 234 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVH--------RSPQPLMSPAWSP--------DGSKLAYVTFESGRSALVIQTLANGA-------- 234 (429)
T ss_pred eEEEEcCCCCCC-EEee--------cCCCceeeeEEcC--------CCCEEEEEEecCCCcEEEEEECCCCC--------
Confidence 688888854433 3332 2224566666654 455665543 23467777765322
Q ss_pred eEEEEEccCCCceEEEEEcCCCCEEEEe-cCCC--eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454 153 TVKSWNVCASGTIAFSKVDISEKFSLFG-GKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (326)
Q Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 229 (326)
.+... ..........|+|+|+.|+.. ..++ .|.+||+.+++....... . ..+....|+| +++.
T Consensus 235 -~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~---------~~~~~~~wSP--DG~~ 300 (429)
T PRK03629 235 -VRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-R---------SNNTEPTWFP--DSQN 300 (429)
T ss_pred -eEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-C---------CCcCceEECC--CCCE
Confidence 11111 112334568999999877754 4444 588999987765332221 1 2245678998 5666
Q ss_pred EEEEeC-CCe--EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-C--CcEEEEECCCCeEEEEEcceecce
Q 020454 230 FVAGTN-DHQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S--GDLASVDIRTGKLLGCFIGKCSGS 303 (326)
Q Consensus 230 l~~~~~-dg~--v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-d--g~v~iwd~~~~~~~~~~~~~~~~~ 303 (326)
|+..+. ++. |.++|+..+ . ...+...........|+|||++|+..+. + ..|.+||+.+++.. .+.. ...
T Consensus 301 I~f~s~~~g~~~Iy~~d~~~g-~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~--~~~ 375 (429)
T PRK03629 301 LAYTSDQAGRPQVYKVNINGG-A-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD--TFL 375 (429)
T ss_pred EEEEeCCCCCceEEEEECCCC-C-eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC--CCC
Confidence 766554 344 444566654 2 3444444445667899999999986543 3 35888999887643 3332 223
Q ss_pred EEEEEECCCCCEEEEeccCcc
Q 020454 304 IRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 304 v~~l~~~p~~~~l~s~s~D~~ 324 (326)
.....|+||++.|+..+.|+.
T Consensus 376 ~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 376 DETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred CCCceECCCCCEEEEEEcCCC
Confidence 456789999999999988864
No 232
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=1.4e-11 Score=101.21 Aligned_cols=250 Identities=15% Similarity=0.144 Sum_probs=170.3
Q ss_pred CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (326)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~ 128 (326)
.+..++-.+.|. ..+..|++|+.|..|.+||...+..+..+.. +|...|.-..+++ + +.+..+++
T Consensus 140 ~H~GcVntV~FN--~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-------GH~~NvfQaKFiP-~-----s~d~ti~~ 204 (559)
T KOG1334|consen 140 KHKGCVNTVHFN--QRGDVLASGSDDLQVVVWDWVSGSPKLSFES-------GHCNNVFQAKFIP-F-----SGDRTIVT 204 (559)
T ss_pred CCCCccceeeec--ccCceeeccCccceEEeehhhccCccccccc-------ccccchhhhhccC-C-----CCCcCcee
Confidence 344455556664 3455899999999999999988887766664 4545554334333 1 26778999
Q ss_pred EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCC
Q 020454 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (326)
Q Consensus 129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~ 207 (326)
++.||++++-.+.... ...++.++. .+.++|..++..|.. +-|.+++.|+.+.-+|++...+...+.....+.
T Consensus 205 ~s~dgqvr~s~i~~t~----~~e~t~rl~--~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~ 278 (559)
T KOG1334|consen 205 SSRDGQVRVSEILETG----YVENTKRLA--PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE 278 (559)
T ss_pred ccccCceeeeeecccc----ceecceecc--cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCC
Confidence 9999999987765432 222233332 357789999999875 778899999999999999876544332111111
Q ss_pred CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-----ceeEEe------ecCCceEEEEecCCCCeEEEE
Q 020454 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-----PVMSFD------FRETPIKAVAEEPDSFNIYIG 276 (326)
Q Consensus 208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~------~~~~~i~~v~~s~~~~~l~~g 276 (326)
......++++..|.+ .+.+++++.|..+++||.+.... ++.++. ...-.|++++|+.++.-++++
T Consensus 279 ---~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 279 ---KERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred ---ccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence 011346788888864 45899999999999999875322 122332 223479999999888888888
Q ss_pred cCCCcEEEEECCC--C----------eEEEE-Ecceecc--eEEEEEE-CCCCCEEEEeccCcc
Q 020454 277 NGSGDLASVDIRT--G----------KLLGC-FIGKCSG--SIRSIAR-HPTLPIIASCGFLEA 324 (326)
Q Consensus 277 ~~dg~v~iwd~~~--~----------~~~~~-~~~~~~~--~v~~l~~-~p~~~~l~s~s~D~~ 324 (326)
-.|-.|++|.-.- | ..+.. |+|| .. .|..+-| -|...|+++||.=|.
T Consensus 355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGH-rN~~TVKgVNFfGPrsEyVvSGSDCGh 417 (559)
T KOG1334|consen 355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGH-RNSRTVKGVNFFGPRSEYVVSGSDCGH 417 (559)
T ss_pred ecccceEEeccccccCCCCCCCcchhhccchhhccc-ccccccceeeeccCccceEEecCccce
Confidence 8888999995442 2 22333 7887 43 4777755 488899999986443
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=8.8e-10 Score=95.49 Aligned_cols=211 Identities=12% Similarity=0.029 Sum_probs=124.4
Q ss_pred EeeeCCCCCeEEEEec---CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCC
Q 020454 58 SIDDSQNDPLLAVARK---NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKG 133 (326)
Q Consensus 58 ~~~~~~~~~~l~~g~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g 133 (326)
+..++++++.|+..+. +..|.+|++.+++.... ... . +......+.+ ++..|+.. ..+|
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~------~--~~~~~~~~SP--------DG~~La~~~~~~g 265 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASF------P--RHNGAPAFSP--------DGSKLAFALSKTG 265 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCC------C--CCcCCeEECC--------CCCEEEEEEcCCC
Confidence 3445566667776542 35789999977764322 211 0 1222344433 44555544 4455
Q ss_pred --cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC-Ce--EEEEECCCceeeeeecCCCCCCC
Q 020454 134 --KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG-VE--VNVWDLDKCEKIWTAKPPPKNSL 208 (326)
Q Consensus 134 --~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-~~--i~iwd~~~~~~~~~~~~~~~~~~ 208 (326)
.|++|+++... ..++. .....+....|+|+++.|+..+.+ +. |.++|+.+++... +....
T Consensus 266 ~~~I~~~d~~tg~--------~~~lt--~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~---- 330 (429)
T PRK03629 266 SLNLYVMDLASGQ--------IRQVT--DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEG---- 330 (429)
T ss_pred CcEEEEEECCCCC--------EEEcc--CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecCC----
Confidence 46777765322 11121 123356788999999988766543 44 4445666554322 11111
Q ss_pred CcCCCCceeeeEEeecCCCcEEEEEeCC---CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCc---E
Q 020454 209 GIFTPTWFTSAAFLSIDDHRKFVAGTND---HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD---L 282 (326)
Q Consensus 209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~---v 282 (326)
.......|+| +++.++..+.+ ..|.+||+.++ . ...+... .......|+|||++|+.++.++. +
T Consensus 331 -----~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 331 -----SQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred -----CCccCEEECC--CCCEEEEEEccCCCceEEEEECCCC-C-eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence 1234567887 56677665433 36888998866 2 3344322 23346789999999998887764 6
Q ss_pred EEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~ 312 (326)
.++++ +|+....+.+| .+.+...+|+|-
T Consensus 401 ~~~~~-~G~~~~~l~~~-~~~~~~p~Wsp~ 428 (429)
T PRK03629 401 NLVST-DGRFKARLPAT-DGQVKFPAWSPY 428 (429)
T ss_pred EEEEC-CCCCeEECccC-CCCcCCcccCCC
Confidence 77777 46666778777 888999999873
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.37 E-value=4e-09 Score=88.98 Aligned_cols=201 Identities=18% Similarity=0.167 Sum_probs=128.5
Q ss_pred EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccc
Q 020454 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA 147 (326)
Q Consensus 68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~ 147 (326)
+++-..+|.|.+.|..+.+.+..+.. . ......+.+.+ ++.++++++.||.|.++|+...+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~-------~-~~~h~~~~~s~--------Dgr~~yv~~rdg~vsviD~~~~~--- 69 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPT-------G-GAPHAGLKFSP--------DGRYLYVANRDGTVSVIDLATGK--- 69 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE--------S-TTEEEEEE-TT---------SSEEEEEETTSEEEEEETTSSS---
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcC-------C-CCceeEEEecC--------CCCEEEEEcCCCeEEEEECCccc---
Confidence 34566789999999999998888874 1 12222233323 56788888999999999987655
Q ss_pred ccccceEEEEEccCCCceEEEEEcCCCCEEEEec-CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454 148 ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (326)
Q Consensus 148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 226 (326)
.++.... +.....++++++|++++++. ..+.+.++|.++.+++..+......... ....+.++..+|..
T Consensus 70 -----~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~--~~~Rv~aIv~s~~~- 139 (369)
T PF02239_consen 70 -----VVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG--PESRVAAIVASPGR- 139 (369)
T ss_dssp -----EEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT--S---EEEEEE-SSS-
T ss_pred -----EEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc--cCCCceeEEecCCC-
Confidence 4444443 56788999999999998776 5789999999999888776543211100 22356677777642
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEE-EcCCCcEEEEECCCCeEEEEEc
Q 020454 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI-GNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 227 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~-g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
..++++.-..+.|-+.|....+.................|+|+++++++ ...++.|-++|.++++.+..+.
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 2244444555888888977653332233333456778899999998875 4667799999999998876653
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=2e-10 Score=96.62 Aligned_cols=199 Identities=12% Similarity=0.068 Sum_probs=143.3
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecc--ccc----------ccccCCCCceEEEEecC
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLF--KRQ----------REESSSRSRTLLTCTTK 132 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~----------~~~~~~~~~~l~~~~~~ 132 (326)
..++|....||.+++|+..++++...+..... -.+..+++.|- ... ....+.+...++-|...
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~-----~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS-----LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchh-----ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 34799999999999999998888777654321 11222222211 000 01113345678889999
Q ss_pred CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (326)
Q Consensus 133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (326)
|.|.+|++...+. +-++-.-.+.+.|.++.++.+-..|.+++.|..+..|+...++.+...+..+
T Consensus 80 g~v~~ys~~~g~i-------t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~-------- 144 (541)
T KOG4547|consen 80 GSVLLYSVAGGEI-------TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK-------- 144 (541)
T ss_pred ccEEEEEecCCeE-------EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC--------
Confidence 9999999765442 1122223567889999999888999999999999999999888777766544
Q ss_pred CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-----CCeEEEE-cCCCcEEEEE
Q 020454 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-----SFNIYIG-NGSGDLASVD 286 (326)
Q Consensus 213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-----~~~l~~g-~~dg~v~iwd 286 (326)
..+.+++.+| ++..+++++ ++|++||+.+. +.+..|.+|.++|++++|--+ |.+++++ ..+.-+.+|-
T Consensus 145 -~~~~sl~is~--D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 145 -PLVSSLCISP--DGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred -CccceEEEcC--CCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 3466788887 577888886 79999999987 678999999999999999876 7777754 4455677786
Q ss_pred CCC
Q 020454 287 IRT 289 (326)
Q Consensus 287 ~~~ 289 (326)
+..
T Consensus 219 v~~ 221 (541)
T KOG4547|consen 219 VEK 221 (541)
T ss_pred EEc
Confidence 553
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3.5e-10 Score=98.31 Aligned_cols=204 Identities=12% Similarity=0.050 Sum_probs=123.1
Q ss_pred CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC---CcEEEEEcccccccccccc
Q 020454 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEVTKVSAESSC 151 (326)
Q Consensus 75 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~---g~v~i~~~~~~~~~~~~~~ 151 (326)
..|.+||...... ..+. .+...+....+.+ ++..|+..+.. ..|++|++....
T Consensus 184 ~~l~i~D~~g~~~-~~lt--------~~~~~v~~p~wSp--------Dg~~la~~s~~~~~~~l~~~dl~~g~------- 239 (433)
T PRK04922 184 YALQVADSDGYNP-QTIL--------RSAEPILSPAWSP--------DGKKLAYVSFERGRSAIYVQDLATGQ------- 239 (433)
T ss_pred EEEEEECCCCCCc-eEee--------cCCCccccccCCC--------CCCEEEEEecCCCCcEEEEEECCCCC-------
Confidence 3688899854333 3332 2224566566544 55567666533 358888875432
Q ss_pred ceEEEEEccCCCceEEEEEcCCCCEEE-EecCCC--eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc
Q 020454 152 STVKSWNVCASGTIAFSKVDISEKFSL-FGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (326)
Q Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 228 (326)
...+-. ........+|+|+++.|+ +.+.++ .|.+||+.+++... +..+. ......+|+| +++
T Consensus 240 -~~~l~~--~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~---------~~~~~~~~sp--DG~ 304 (433)
T PRK04922 240 -RELVAS--FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHF---------GIDTEPTWAP--DGK 304 (433)
T ss_pred -EEEecc--CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCC---------CCccceEECC--CCC
Confidence 111111 123445789999998665 444554 59999998776432 22211 1234568988 565
Q ss_pred EEEEEe-CCCe--EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC---cEEEEECCCCeEEEEEcceecc
Q 020454 229 KFVAGT-NDHQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSG 302 (326)
Q Consensus 229 ~l~~~~-~dg~--v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg---~v~iwd~~~~~~~~~~~~~~~~ 302 (326)
.|+..+ .+|. |+++|+..+ + ...+..+.......+|+|+|++|+..+.++ .|.+||+.+++.. .+. + ..
T Consensus 305 ~l~f~sd~~g~~~iy~~dl~~g-~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~-~~ 379 (433)
T PRK04922 305 SIYFTSDRGGRPQIYRVAASGG-S-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-P-GS 379 (433)
T ss_pred EEEEEECCCCCceEEEEECCCC-C-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-C-CC
Confidence 666655 3444 666677654 2 333433434455789999999998654433 5999999887755 333 2 22
Q ss_pred eEEEEEECCCCCEEEEeccC
Q 020454 303 SIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 303 ~v~~l~~~p~~~~l~s~s~D 322 (326)
......|+|++++|+..+.+
T Consensus 380 ~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 380 LDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred CCCCceECCCCCEEEEEEec
Confidence 45677999999988776654
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.4e-09 Score=94.65 Aligned_cols=203 Identities=8% Similarity=0.029 Sum_probs=124.5
Q ss_pred cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec---CCcEEEEEccccccccccccc
Q 020454 76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---KGKASMRSIEVTKVSAESSCS 152 (326)
Q Consensus 76 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~---~g~v~i~~~~~~~~~~~~~~~ 152 (326)
.|.++|...... ..+. .+...+....+.+ ++..|+..+. +..|++|++....
T Consensus 183 ~l~~~d~dg~~~-~~lt--------~~~~~v~~p~wSp--------DG~~lay~s~~~g~~~i~~~dl~~g~-------- 237 (435)
T PRK05137 183 RLAIMDQDGANV-RYLT--------DGSSLVLTPRFSP--------NRQEITYMSYANGRPRVYLLDLETGQ-------- 237 (435)
T ss_pred EEEEECCCCCCc-EEEe--------cCCCCeEeeEECC--------CCCEEEEEEecCCCCEEEEEECCCCc--------
Confidence 788888744333 3333 2335676666654 5556666543 4578888875432
Q ss_pred eEEEEEccCCCceEEEEEcCCCCEEE-EecCCCe--EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454 153 TVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (326)
Q Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 229 (326)
.+... ...+.+...+|+|+|+.|+ +.+.++. |.+||+.+++... +..+. .......|+| +++.
T Consensus 238 -~~~l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~---------~~~~~~~~sp--DG~~ 303 (435)
T PRK05137 238 -RELVG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSP---------AIDTSPSYSP--DGSQ 303 (435)
T ss_pred -EEEee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCC---------CccCceeEcC--CCCE
Confidence 11111 1234567889999998765 5555554 7777887765432 22211 2244568888 5666
Q ss_pred EEEEe-CCC--eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC---CcEEEEECCCCeEEEEEcceecce
Q 020454 230 FVAGT-NDH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGS 303 (326)
Q Consensus 230 l~~~~-~dg--~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~ 303 (326)
++..+ .+| .|+++|+..+ . ...+..+...+....|+|+|++|+..+.+ ..|.+||+.++.. ..+.. ...
T Consensus 304 i~f~s~~~g~~~Iy~~d~~g~-~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~ 378 (435)
T PRK05137 304 IVFESDRSGSPQLYVMNADGS-N-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFL 378 (435)
T ss_pred EEEEECCCCCCeEEEEECCCC-C-eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CCC
Confidence 66655 333 6888887754 2 44554445566778999999999865543 3588889865543 33332 335
Q ss_pred EEEEEECCCCCEEEEeccC
Q 020454 304 IRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 304 v~~l~~~p~~~~l~s~s~D 322 (326)
+....|+|+++.|+..+.+
T Consensus 379 ~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 379 VEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CCCCeECCCCCEEEEEEcc
Confidence 7788999999988765543
No 238
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.35 E-value=7.9e-10 Score=84.52 Aligned_cols=242 Identities=9% Similarity=-0.020 Sum_probs=155.0
Q ss_pred CCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (326)
Q Consensus 13 ~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~ 92 (326)
....|+.|+.-|..++|...+. .+..+++..- .....+. -..++... -+..++.|.++++++++.+......+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn-~~h~~~cd~s---nn~v~~~-~r~cd~~~--~~~i~sndht~k~~~~~~~s~~~~~h 155 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTN-DGHLYQCDVS---NNDVTLV-KRYCDLKF--PLNIASNDHTGKTMVVSGDSNKFAVH 155 (344)
T ss_pred cccEEEeccccceeeeecccCc-ccceeeeccc---ccchhhh-hhhccccc--ceeeccCCcceeEEEEecCcccceee
Confidence 3466888999999999998866 3333333211 1111111 11111111 27889999999999986555444433
Q ss_pred ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (326)
Q Consensus 93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (326)
. .. -.+.+++..+ +...+++.+....|..|.++..... .++++.......-.+.+|+.
T Consensus 156 ~-------~~-~~~ns~~~sn--------d~~~~~~Vgds~~Vf~y~id~~sey------~~~~~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 156 N-------QN-LTQNSLHYSN--------DPSWGSSVGDSRRVFRYAIDDESEY------IENIYEAPTSDHGFYNSFSE 213 (344)
T ss_pred c-------cc-cceeeeEEcC--------CCceEEEecCCCcceEEEeCCccce------eeeeEecccCCCceeeeecc
Confidence 2 10 1245566544 5567888899999999998765421 34455556667788999999
Q ss_pred CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (326)
Q Consensus 173 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 252 (326)
....+|++..||++.|||++.............. .+.+.+..+.|+|...-.+|+..-.-+.+.+-|+|+.+. .+
T Consensus 214 ~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp----~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~-~q 288 (344)
T KOG4532|consen 214 NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRP----HHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN-HQ 288 (344)
T ss_pred CcceEEEEecCCcEEEEEecccccchhhhcccCC----CCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce-ee
Confidence 9999999999999999999986543332221111 134578899999754445777777889999999998744 22
Q ss_pred EEee-------cC-CceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 253 SFDF-------RE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 253 ~~~~-------~~-~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
.+.. |. ..|..-.|+.++..+.+.+++ .+.=|++.+
T Consensus 289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 289 VIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred EEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 2221 22 237777787777777766655 455555543
No 239
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.34 E-value=9.5e-11 Score=90.50 Aligned_cols=223 Identities=13% Similarity=0.118 Sum_probs=139.7
Q ss_pred cCCcEEEEeccccceee--eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccc
Q 020454 73 KNGLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS 150 (326)
Q Consensus 73 ~dg~i~i~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~ 150 (326)
..|.+.+|++...+... +++. .....+..+-+-. .+ ...+-.++-+...|.|.++........
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~-------~dts~~~dm~w~~-~~---~~g~~~l~~a~a~G~i~~~r~~~~~ss---- 108 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQC-------TDTSTEFDMLWRI-RE---TDGDFNLLDAHARGQIQLYRNDEDESS---- 108 (339)
T ss_pred eccceEEEeecccccCccceeee-------ecccccceeeeee-cc---CCccceeeeccccceEEEEeeccceee----
Confidence 45788999987666544 1111 1112222222211 10 001125677788899988876543310
Q ss_pred cceEEEEEccC--CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceee--eeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454 151 CSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (326)
Q Consensus 151 ~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 226 (326)
..++-..... .....++.|++.+..++++-.+|.+.+-+....... ...+.|..+.+ ...|+.. +
T Consensus 109 -~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~W---------ta~f~~~-~ 177 (339)
T KOG0280|consen 109 -VHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAW---------TAKFSDK-E 177 (339)
T ss_pred -eeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeee---------eeecccC-C
Confidence 0111111000 113568889999988999999999986655444332 24555554433 3355543 4
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCceeE-EeecCCceEEEEecC-CCCeEEEEcCCCcEEEEECCC-CeEEEEEcceecce
Q 020454 227 HRKFVAGTNDHQVRLYDTSAQRRPVMS-FDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGS 303 (326)
Q Consensus 227 ~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~ 303 (326)
.+++.+|+.|+.+..||+|..+..+.. .+.|...|.++.-+| .+.+|++|+.|-.|++||.++ ++++..-+ ..+.
T Consensus 178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GG 255 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGG 255 (339)
T ss_pred CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccc
Confidence 469999999999999999944344433 556888899988776 478999999999999999994 67775443 4789
Q ss_pred EEEEEECCCC--CEEEEeccCc
Q 020454 304 IRSIARHPTL--PIIASCGFLE 323 (326)
Q Consensus 304 v~~l~~~p~~--~~l~s~s~D~ 323 (326)
|+.+.++|.- .+|++|-..|
T Consensus 256 VWRi~~~p~~~~~lL~~CMh~G 277 (339)
T KOG0280|consen 256 VWRIKHHPEIFHRLLAACMHNG 277 (339)
T ss_pred eEEEEecchhhhHHHHHHHhcC
Confidence 9999999853 3455554443
No 240
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.34 E-value=3.5e-12 Score=111.11 Aligned_cols=219 Identities=15% Similarity=0.210 Sum_probs=152.1
Q ss_pred CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcc
Q 020454 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (326)
Q Consensus 62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~ 141 (326)
+..+.++++|+.|..|+||..+++..+.... +|.+.|+.++... ..-.+++++.|..|++|.+.
T Consensus 199 Drtg~~Iitgsdd~lvKiwS~et~~~lAs~r--------Ghs~ditdlavs~--------~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 199 DRTGRYIITGSDDRLVKIWSMETARCLASCR--------GHSGDITDLAVSS--------NNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred ccccceEeecCccceeeeeeccchhhhccCC--------CCccccchhccch--------hhhhhhhcccCceEEEEecC
Confidence 4556799999999999999998888776655 7788999888644 34568888999999999987
Q ss_pred ccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (326)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (326)
.... +.+.. .+.+.|++++|+|-. +.+.||++++||.+-.-.++.-.....+ ...-+.++.|
T Consensus 263 ~~~p--------vsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~-----~~~~~~s~~~ 324 (1113)
T KOG0644|consen 263 DGAP--------VSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFT-----EKDLVDSILF 324 (1113)
T ss_pred CCch--------HHHHh-ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcc-----cccceeeeec
Confidence 6542 22222 346789999999954 7789999999998822222221111111 1123445555
Q ss_pred eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEccee
Q 020454 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKC 300 (326)
Q Consensus 222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~ 300 (326)
.. .+..+++++.|+.-..|.+.... .+...+.-+..+.+ ..+.+++-.+-.+.+|++.+|.+++.+.+|
T Consensus 325 ~~--~~~~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh- 394 (1113)
T KOG0644|consen 325 EN--NGDRFLTGSRDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH- 394 (1113)
T ss_pred cc--cccccccccCCcccccchhhHhh-------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc-
Confidence 43 44578999999988888765221 11111111122222 245667777888999999999999999998
Q ss_pred cceEEEEEECCCC-CEEEEeccCcc
Q 020454 301 SGSIRSIARHPTL-PIIASCGFLEA 324 (326)
Q Consensus 301 ~~~v~~l~~~p~~-~~l~s~s~D~~ 324 (326)
...+.-|.+||-+ .+..++|.||.
T Consensus 395 sd~~yvLd~Hpfn~ri~msag~dgs 419 (1113)
T KOG0644|consen 395 SDEVYVLDVHPFNPRIAMSAGYDGS 419 (1113)
T ss_pred ccceeeeeecCCCcHhhhhccCCCc
Confidence 9999999999955 45668888885
No 241
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=7.1e-11 Score=105.36 Aligned_cols=191 Identities=12% Similarity=0.128 Sum_probs=141.2
Q ss_pred CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~ 143 (326)
+++.++.++.++.+.+||...+.....+.. .+..........-. +...-++++++.-+.|.+|+....
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-------~er~~l~~~~~~g~-----s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQS-------DERCTLYSSLIIGD-----SAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCC-------CceEEEEeEEEEec-----cCcEEEEEeccccccEEEEecccc
Confidence 445799999999999999977666555443 11111111111111 114567899999999999997733
Q ss_pred ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454 144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (326)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 223 (326)
+. .+ .-..|.+.|..+.++.+|+++++.+.|.++++|++.+.+... ...+.|+..|-.+.|+|
T Consensus 166 n~-------p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------~~~fgHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 166 NK-------PI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------CTGFGHSARVWACCFLP 228 (967)
T ss_pred CC-------cc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------cccccccceeEEEEecc
Confidence 21 22 334578899999999999999999999999999999877655 22345667788999987
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec-CCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
+ .+++++.|-+.++|+.... + +..+..| ...|..++..++...++++..||.+++||+..
T Consensus 229 n----~i~t~gedctcrvW~~~~~-~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 229 N----RIITVGEDCTCRVWGVNGT-Q-LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c----eeEEeccceEEEEEecccc-e-ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 4 8999999999999976632 2 4455554 34689999998888999999999999999865
No 242
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=7.2e-12 Score=117.26 Aligned_cols=219 Identities=15% Similarity=0.164 Sum_probs=151.3
Q ss_pred EEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEE
Q 020454 57 ASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKAS 136 (326)
Q Consensus 57 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~ 136 (326)
.++...+..++-++|+.||.|++|....+..+..++. .+...+..+.+.. .++.+-.+..||.+.
T Consensus 2212 ~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-------~g~s~vtr~~f~~--------qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2212 RRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-------AGNSRVTRSRFNH--------QGNKFGIVDGDGDLS 2276 (2439)
T ss_pred eeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-------cCcchhhhhhhcc--------cCCceeeeccCCcee
Confidence 3455667778899999999999999988888777776 3335666565443 567899999999999
Q ss_pred EEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec---CCCeEEEEECCCceeeeeecCCCCCCCCcCCC
Q 020454 137 MRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG---KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (326)
Q Consensus 137 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 213 (326)
+|..... ...-|+. +......++|-. ..+++++ .++.+.+||..-.-...-+. ..|+
T Consensus 2277 l~q~~pk---------~~~s~qc-hnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--------~~H~ 2336 (2439)
T KOG1064|consen 2277 LWQASPK---------PYTSWQC-HNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--------TCHD 2336 (2439)
T ss_pred ecccCCc---------ceecccc-CCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--------eecC
Confidence 9987632 3334443 344555555543 5566654 46789999965322111111 1244
Q ss_pred CceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE
Q 020454 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293 (326)
Q Consensus 214 ~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~ 293 (326)
..++.+++.|. .++|++|+.+|.|++||++.. +.++.++. ++ ...++++|+..|.++||++..-..+
T Consensus 2337 ~gaT~l~~~P~--~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2337 GGATVLAYAPK--HQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred CCceEEEEcCc--ceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccceEEEEccccchh
Confidence 67899999994 569999999999999999954 55555543 44 5678999999999999999987777
Q ss_pred EEEccee--cce--E--EEEEECCCCCEEEEeccCcc
Q 020454 294 GCFIGKC--SGS--I--RSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 294 ~~~~~~~--~~~--v--~~l~~~p~~~~l~s~s~D~~ 324 (326)
+.++..| .+- + ..+-..+ ...|++||.||+
T Consensus 2404 ~~~p~e~ak~gfFr~~g~Q~~v~~-~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2404 HTFPSEHAKQGFFRNIGMQINVGQ-CNRIFSCGADGT 2439 (2439)
T ss_pred hcCchhhcccchhhhcCceeeecc-CceEEEecCCCC
Confidence 7766311 111 1 2233333 457899999984
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.33 E-value=3.9e-08 Score=82.93 Aligned_cols=274 Identities=15% Similarity=0.126 Sum_probs=155.8
Q ss_pred eeeecCc----ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec----CCcEEEEecccc--c
Q 020454 17 ALTFDSL----GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK----NGLTDILNPLNG--D 86 (326)
Q Consensus 17 l~~~~~~----G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~----dg~i~i~~~~~~--~ 86 (326)
++.|+.. +-|.+|++... .+.............+ . .+.+ ++++++|++... +|.|..|++... +
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~-~g~l~~~~~~~~~~~P-s--~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~ 75 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEE-TGTLTLVQTVAEGENP-S--WLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT 75 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETT-TTEEEEEEEEEESSSE-C--CEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTE
T ss_pred EEEEcCCCCCCCcEEEEEEcCC-CCCceEeeeecCCCCC-c--eEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcce
Confidence 3455555 78999999554 3444343332221111 1 1222 345567777766 579999988754 3
Q ss_pred eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccccccccccceEEEEEc------
Q 020454 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNV------ 159 (326)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~------ 159 (326)
+ ..+.... ........++..+ ++..++++ ..+|.+.+++++...... .....+..
T Consensus 76 L-~~~~~~~-----~~g~~p~~i~~~~--------~g~~l~vany~~g~v~v~~l~~~g~l~----~~~~~~~~~g~g~~ 137 (345)
T PF10282_consen 76 L-TLLNSVP-----SGGSSPCHIAVDP--------DGRFLYVANYGGGSVSVFPLDDDGSLG----EVVQTVRHEGSGPN 137 (345)
T ss_dssp E-EEEEEEE-----ESSSCEEEEEECT--------TSSEEEEEETTTTEEEEEEECTTSEEE----EEEEEEESEEEESS
T ss_pred e-EEeeeec-----cCCCCcEEEEEec--------CCCEEEEEEccCCeEEEEEccCCcccc----eeeeecccCCCCCc
Confidence 3 3332210 1123344466544 45566555 469999999987643211 11122221
Q ss_pred ---cCCCceEEEEEcCCCCEEEEec-CCCeEEEEECCCcee-eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE-EEE
Q 020454 160 ---CASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAG 233 (326)
Q Consensus 160 ---~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-~~~ 233 (326)
.......++.++|+++++++.. ....|.+|++..... +..... ..+........+.|+| +++++ ++.
T Consensus 138 ~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~-----~~~~~G~GPRh~~f~p--dg~~~Yv~~ 210 (345)
T PF10282_consen 138 PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS-----IKVPPGSGPRHLAFSP--DGKYAYVVN 210 (345)
T ss_dssp TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE-----EECSTTSSEEEEEE-T--TSSEEEEEE
T ss_pred ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec-----cccccCCCCcEEEEcC--CcCEEEEec
Confidence 1234588999999999887753 335799999976542 111000 0111223467889998 44444 556
Q ss_pred eCCCeEEEEeCCCCCCce---eEEee------cCCceEEEEecCCCCeEEEEc-CCCcEEEEECC--CCe--EEEEEcce
Q 020454 234 TNDHQVRLYDTSAQRRPV---MSFDF------RETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR--TGK--LLGCFIGK 299 (326)
Q Consensus 234 ~~dg~v~iwd~~~~~~~~---~~~~~------~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~--~~~--~~~~~~~~ 299 (326)
..+++|.+|++......+ ..+.. .......++++|||++|+++. ..+.|.+|++. +++ .+..+...
T Consensus 211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~ 290 (345)
T PF10282_consen 211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG 290 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES
T ss_pred CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC
Confidence 678899999988321212 22221 112578899999999998766 45789999993 343 33444432
Q ss_pred ecceEEEEEECCCCCEEEEeccC
Q 020454 300 CSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 300 ~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
...-+.++++|++++|+++..+
T Consensus 291 -G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 291 -GKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp -SSSEEEEEE-TTSSEEEEEETT
T ss_pred -CCCccEEEEeCCCCEEEEEecC
Confidence 3347899999999999988644
No 244
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.33 E-value=5.2e-09 Score=82.41 Aligned_cols=277 Identities=11% Similarity=0.083 Sum_probs=160.3
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..+...-.++.|.||++... ...... .+.+..+.+.+|.++.. .+|.+..-+-.|.+|.+.+.+.... ..
T Consensus 62 ~ilC~~yk~~~vqvwsl~Qp-----ew~ckI--deg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~~-~~- 131 (447)
T KOG4497|consen 62 HILCVAYKDPKVQVWSLVQP-----EWYCKI--DEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYLL-PH- 131 (447)
T ss_pred eeeeeeeccceEEEEEeecc-----eeEEEe--ccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEEe-cc-
Confidence 33445566789999998865 222122 23445566666654432 3677788899999999976654221 11
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcE---EE-----------EEccccccccc----cccceEEE
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA---SM-----------RSIEVTKVSAE----SSCSTVKS 156 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v---~i-----------~~~~~~~~~~~----~~~~~~~~ 156 (326)
. ...+.+.++.+ ++.+.+.++.-.-. .+ ++++..+ .++ ..+..+.+
T Consensus 132 ------p-K~~~kg~~f~~--------dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~D-ltgieWsPdg~~laV 195 (447)
T KOG4497|consen 132 ------P-KTNVKGYAFHP--------DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTID-LTGIEWSPDGNWLAV 195 (447)
T ss_pred ------c-ccCceeEEECC--------CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccc-ccCceECCCCcEEEE
Confidence 0 12234455432 22333333221100 00 0111100 001 11223344
Q ss_pred EEcc---------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeee----------------------------
Q 020454 157 WNVC---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT---------------------------- 199 (326)
Q Consensus 157 ~~~~---------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~---------------------------- 199 (326)
|+.. -+-.+..++|+|.+++|++|+.|+.+++.+--+-++...
T Consensus 196 wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~ 275 (447)
T KOG4497|consen 196 WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHH 275 (447)
T ss_pred ecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccc
Confidence 4321 134688999999999999999999998865432110000
Q ss_pred -ec-------CC--------------C------CCCCCcCCC-CceeeeEEeecCCCcEEEEEeC--CCeEEEEeCCCCC
Q 020454 200 -AK-------PP--------------P------KNSLGIFTP-TWFTSAAFLSIDDHRKFVAGTN--DHQVRLYDTSAQR 248 (326)
Q Consensus 200 -~~-------~~--------------~------~~~~~~~~~-~~v~~~~~~p~~~~~~l~~~~~--dg~v~iwd~~~~~ 248 (326)
++ .+ + +...+...| ..+.-++|++ |..++++-.. -+.+-+||++..
T Consensus 276 cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~--Ds~y~aTrnd~~PnalW~Wdlq~l- 352 (447)
T KOG4497|consen 276 CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC--DSTYAATRNDKYPNALWLWDLQNL- 352 (447)
T ss_pred ccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC--CceEEeeecCCCCceEEEEechhh-
Confidence 00 00 0 000011111 2456678887 4546555432 347889999965
Q ss_pred CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 249 ~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
+ ++.+-....+|....|+|....|+.......+++|.......+. .++. .-.|..+.|+.+|..++-+|.|-
T Consensus 353 ~-l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~-GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 353 K-LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKK-GFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred h-hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCC-CceeeeEEecCCCcEEEEEcCCc
Confidence 3 55555677899999999998888877777789999987654443 3333 45899999999999999999885
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=1.1e-10 Score=98.03 Aligned_cols=187 Identities=13% Similarity=0.136 Sum_probs=137.6
Q ss_pred EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccc
Q 020454 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA 147 (326)
Q Consensus 68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~ 147 (326)
|++++....|.-++++.|.++..+..- .+.+..+...+ ..+.|++|+.+|.|.+||......
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~--------~~~lN~v~in~--------~hgLla~Gt~~g~VEfwDpR~ksr-- 209 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETD--------SGELNVVSINE--------EHGLLACGTEDGVVEFWDPRDKSR-- 209 (703)
T ss_pred EEEeecCcceEEEEccccccccccccc--------cccceeeeecC--------ccceEEecccCceEEEecchhhhh--
Confidence 666666678888899999999888752 24455444433 446788888899999999876542
Q ss_pred ccccceEEEEEccC----------CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCcee
Q 020454 148 ESSCSTVKSWNVCA----------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT 217 (326)
Q Consensus 148 ~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 217 (326)
+...+... ...|+++.|+.+|-.+++|..+|.+.|||++..+++.... |.. ..+|.
T Consensus 210 ------v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-h~~-------e~pi~ 275 (703)
T KOG2321|consen 210 ------VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-HGY-------ELPIK 275 (703)
T ss_pred ------heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-cCC-------cccee
Confidence 22222111 1249999999999999999999999999999988877532 221 13577
Q ss_pred eeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 218 ~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
.+.|.+.+..+.+++. ....++|||-.++ ++...++.. ..+..+|+-|++-+++++..++.+..|-+..
T Consensus 276 ~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G-k~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 276 KLDWQDTDQQNKVVSM-DKRILKIWDECTG-KPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred eecccccCCCceEEec-chHHhhhcccccC-Cceeecccc-CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 8889887444455554 4678999999988 556666543 5599999999999999999999888887765
No 246
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.27 E-value=2.5e-09 Score=81.83 Aligned_cols=227 Identities=13% Similarity=0.041 Sum_probs=143.1
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
..+|+.|+..|...+|...+.+....+.. .+...|. ..+... -..-.+..++.|.++++.+++...
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd-------~snn~v~---~~~r~c----d~~~~~~i~sndht~k~~~~~~~s 149 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCD-------VSNNDVT---LVKRYC----DLKFPLNIASNDHTGKTMVVSGDS 149 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeec-------ccccchh---hhhhhc----ccccceeeccCCcceeEEEEecCc
Confidence 34799999999999999976654333221 1212222 111110 012347788888888888866432
Q ss_pred cccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCc-eeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 223 (326)
. +.+ +.. ..-.+.+++++++++++++.+....|..|.+... +.+......... ..-.+.+|+.
T Consensus 150 ~------~~~-~h~--~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-------D~gF~~S~s~ 213 (344)
T KOG4532|consen 150 N------KFA-VHN--QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-------DHGFYNSFSE 213 (344)
T ss_pred c------cce-eec--cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-------CCceeeeecc
Confidence 1 111 111 0124889999999999999999999999998753 222221111100 1122456665
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCCCCceeE----EeecCCceEEEEecCCCC--eEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMS----FDFRETPIKAVAEEPDSF--NIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~~i~~v~~s~~~~--~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
. ...+|++++||++.|||+|....|... ...|.+.++.+.|++.|. +|+..-.-+.+++.|+++++-.+.+.
T Consensus 214 ~--~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 214 N--DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred C--cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 3 448999999999999999977555433 335889999999998653 55565666799999999986554432
Q ss_pred -------ceecceEEEEEECCCCCEEEEeccCc
Q 020454 298 -------GKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 298 -------~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
.|....|..-.|+.++.-+.+.+.+.
T Consensus 292 i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 292 IPDDVERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred cCccccccccccccccccccCCCcccccccchh
Confidence 22123477777777666555555443
No 247
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=5e-09 Score=91.15 Aligned_cols=210 Identities=14% Similarity=0.102 Sum_probs=121.5
Q ss_pred EeeeCCCCCeEEEEecC---CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCC
Q 020454 58 SIDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKG 133 (326)
Q Consensus 58 ~~~~~~~~~~l~~g~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g 133 (326)
+..++++++.|+..+.+ ..|.+||+.+++... +... .+......+.+ ++..++ +.+.+|
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~--------~g~~~~~~~Sp--------DG~~l~~~~s~~g 270 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASF--------RGINGAPSFSP--------DGRRLALTLSRDG 270 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccC--------CCCccCceECC--------CCCEEEEEEeCCC
Confidence 33455666677776633 469999997776532 2211 12222344433 444554 445555
Q ss_pred --cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec-CCCe--EEEEECCCceeeeeecCCCCCCC
Q 020454 134 --KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVE--VNVWDLDKCEKIWTAKPPPKNSL 208 (326)
Q Consensus 134 --~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~--i~iwd~~~~~~~~~~~~~~~~~~ 208 (326)
.|++|++.... ++... .........+|+|+++.|+..+ .++. |.++|+.+++....... .
T Consensus 271 ~~~Iy~~d~~~g~---------~~~lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-g---- 335 (433)
T PRK04922 271 NPEIYVMDLGSRQ---------LTRLT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ-G---- 335 (433)
T ss_pred CceEEEEECCCCC---------eEECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC-C----
Confidence 47777765422 11111 1122345678999998887655 3444 66667766543222111 1
Q ss_pred CcCCCCceeeeEEeecCCCcEEEEEeCCC---eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC---CcE
Q 020454 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDL 282 (326)
Q Consensus 209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d---g~v 282 (326)
......+|+| +++.++..+.++ .|.+||+.++ . ...+. +........|+|||++|+..+.+ +.+
T Consensus 336 -----~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g-~-~~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 336 -----NYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTG-S-VRTLT-PGSLDESPSFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred -----CCccCEEECC--CCCEEEEEECCCCceeEEEEECCCC-C-eEECC-CCCCCCCceECCCCCEEEEEEecCCceEE
Confidence 1233568888 566777654433 6999999865 3 23333 22234567899999988865543 358
Q ss_pred EEEECCCCeEEEEEcceecceEEEEEECC
Q 020454 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (326)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 311 (326)
.++++. +.....+..+ .+.+...+|+|
T Consensus 406 ~~~~~~-g~~~~~l~~~-~g~~~~p~wsp 432 (433)
T PRK04922 406 AAVSTD-GRVRQRLVSA-DGEVREPAWSP 432 (433)
T ss_pred EEEECC-CCceEEcccC-CCCCCCCccCC
Confidence 888885 4455556655 67788888887
No 248
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=9.2e-09 Score=89.27 Aligned_cols=212 Identities=15% Similarity=0.133 Sum_probs=124.0
Q ss_pred eeeCCCCCeEEEEecC---CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCc
Q 020454 59 IDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGK 134 (326)
Q Consensus 59 ~~~~~~~~~l~~g~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~ 134 (326)
..++++++.|+..+.+ ..|.+||+.+++... +... .+......+.+ ++..++ +.+.+|.
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~--------~g~~~~~~~SP--------DG~~la~~~~~~g~ 263 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANF--------KGSNSAPAWSP--------DGRTLAVALSRDGN 263 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecC--------CCCccceEECC--------CCCEEEEEEccCCC
Confidence 3455566677776543 359999998776533 2211 12233345433 445554 5677888
Q ss_pred EEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec-CCCeEEEEEC--CCceeeeeecCCCCCCCCcC
Q 020454 135 ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDL--DKCEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 135 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~ 211 (326)
..+|.++.... .++.+. .+........|+|+|+.|+..+ .++...||.+ .+++..... ...
T Consensus 264 ~~Iy~~d~~~~-------~~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g------- 327 (427)
T PRK02889 264 SQIYTVNADGS-------GLRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTG------- 327 (427)
T ss_pred ceEEEEECCCC-------CcEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCC-------
Confidence 88887654221 111111 1122345678999998877554 3456666654 443322111 111
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCC---eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC---cEEEE
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASV 285 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg---~v~iw 285 (326)
.......|+| ++++++..+.++ .|.+||+.++ . ...+... .......|+|||++|+..+.++ .+.+.
T Consensus 328 --~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g-~-~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~ 400 (427)
T PRK02889 328 --SYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATG-Q-VTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAV 400 (427)
T ss_pred --CCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCC-C-eEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEE
Confidence 1123457888 566777666544 6999999866 3 2333322 3346779999999988665443 36666
Q ss_pred ECCCCeEEEEEcceecceEEEEEECCC
Q 020454 286 DIRTGKLLGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 286 d~~~~~~~~~~~~~~~~~v~~l~~~p~ 312 (326)
++ +++....+..+ .+.+...+|+|-
T Consensus 401 ~~-~g~~~~~l~~~-~g~~~~p~wsp~ 425 (427)
T PRK02889 401 SS-DGRIKQRLSVQ-GGDVREPSWGPF 425 (427)
T ss_pred EC-CCCceEEeecC-CCCCCCCccCCC
Confidence 66 46666666655 778888899874
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.24 E-value=1.5e-08 Score=88.18 Aligned_cols=175 Identities=15% Similarity=0.103 Sum_probs=109.0
Q ss_pred CCceEEEEecC---CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE-EecCCC--eEEEEECCCce
Q 020454 122 RSRTLLTCTTK---GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGV--EVNVWDLDKCE 195 (326)
Q Consensus 122 ~~~~l~~~~~~---g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~--~i~iwd~~~~~ 195 (326)
++..++..... ..|++|++.... ..... .....+..++|+|+++.|+ +.+.++ .|.+||+.+++
T Consensus 200 dg~~la~~~~~~~~~~i~v~d~~~g~---------~~~~~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 200 DGQKLAYVSFESGKPEIYVQDLATGQ---------REKVA-SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCC---------EEEee-cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 45566655433 468888865432 11111 1234566789999998665 444444 58889988765
Q ss_pred eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-CC--eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCe
Q 020454 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN 272 (326)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~ 272 (326)
.... ..+. .......|+| +++.|+..+. ++ .|+++|+... . ...+..+...+....|+|+|++
T Consensus 270 ~~~l-~~~~---------~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~-~-~~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 270 LTRL-TNGP---------GIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGG-E-VRRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEC-CCCC---------CCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCC-C-EEEeecCCCCccCeEECCCCCE
Confidence 4322 1111 1123457877 5556665543 33 6788888755 2 3445545566778899999999
Q ss_pred EEEEcCCC---cEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454 273 IYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 273 l~~g~~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
|+.++.++ .|.+||+.++... .+.. ........|+|+++.|+..+.++
T Consensus 336 i~~~~~~~~~~~i~~~d~~~~~~~-~l~~--~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDGGGER-VLTD--TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred EEEEEccCCceEEEEEeCCCCCeE-EccC--CCCCCCceECCCCCEEEEEEeCC
Confidence 99877765 7899999876543 2332 22345668999999888877665
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.22 E-value=1.1e-07 Score=78.82 Aligned_cols=240 Identities=10% Similarity=0.094 Sum_probs=143.7
Q ss_pred CcccEEEEEecCCcCCCcceeeeccCCCCCc---eEEEEEeeeCCCCCeEEEEe-c-CCcEEEEeccccceeeeecccCC
Q 020454 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSN---CVLAASIDDSQNDPLLAVAR-K-NGLTDILNPLNGDLRVAISNAGD 96 (326)
Q Consensus 22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~g~-~-dg~i~i~~~~~~~~~~~~~~~~~ 96 (326)
.++.|.|||+.+. +......-+..++ ...-..+.-++++++|++.. . +..|.++|+.+++++.++..
T Consensus 75 ~~d~V~v~D~~t~-----~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--- 146 (352)
T TIGR02658 75 RTDYVEVIDPQTH-----LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--- 146 (352)
T ss_pred CCCEEEEEECccC-----cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC---
Confidence 7899999999987 5544444333322 11122334456677788776 3 69999999999999888875
Q ss_pred CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEE-EEEcC-CC
Q 020454 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF-SKVDI-SE 174 (326)
Q Consensus 97 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~ 174 (326)
+....+ .. . .+....+-+.||......++..+.. ......+++.. ..++.. =.+.+ ++
T Consensus 147 ----p~~~~v--y~-t---------~e~~~~~~~~Dg~~~~v~~d~~g~~---~~~~~~vf~~~-~~~v~~rP~~~~~dg 206 (352)
T TIGR02658 147 ----PDCYHI--FP-T---------ANDTFFMHCRDGSLAKVGYGTKGNP---KIKPTEVFHPE-DEYLINHPAYSNKSG 206 (352)
T ss_pred ----CCCcEE--EE-e---------cCCccEEEeecCceEEEEecCCCce---EEeeeeeecCC-ccccccCCceEcCCC
Confidence 111111 11 1 2233445556777666555543321 11222233221 001000 03344 77
Q ss_pred CEEEEecCCCeEEEEECCCceeee-----eecCC-CCCCCCcCCCCceeeeEEeecCCCcEEEEEe----------CCCe
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIW-----TAKPP-PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT----------NDHQ 238 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~-----~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~----------~dg~ 238 (326)
+++.+... |.|.+.|+....... ..... ..+. ..|..+.-++++| +++++++.. ..+.
T Consensus 207 ~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~---wrP~g~q~ia~~~--dg~~lyV~~~~~~~~thk~~~~~ 280 (352)
T TIGR02658 207 RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG---WRPGGWQQVAYHR--ARDRIYLLADQRAKWTHKTASRF 280 (352)
T ss_pred cEEEEecC-CeEEEEecCCCcceecceeeeccccccccc---cCCCcceeEEEcC--CCCEEEEEecCCccccccCCCCE
Confidence 88777655 999999975533221 11111 0011 1334444588887 444555532 2258
Q ss_pred EEEEeCCCCCCceeEEeecCCceEEEEecCCCC-eEEEEc-CCCcEEEEECCCCeEEEEEc
Q 020454 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGN-GSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 239 v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~g~-~dg~v~iwd~~~~~~~~~~~ 297 (326)
|.++|..+. +.+..+... ..+..++++||++ +|++.. .++.|.++|..+++.+.++.
T Consensus 281 V~ViD~~t~-kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 281 LFVVDAKTG-KRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEEECCCC-eEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 999999987 556666654 5788999999999 888666 57889999999999998873
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.22 E-value=7.9e-07 Score=73.73 Aligned_cols=270 Identities=16% Similarity=0.079 Sum_probs=142.2
Q ss_pred CCeeeeeecCc-----ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec----------CCcE
Q 020454 13 PPLRALTFDSL-----GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK----------NGLT 77 (326)
Q Consensus 13 ~~~~l~~~~~~-----G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~----------dg~i 77 (326)
++.++..-+.. |.|.|.|..+. ++...+.-...+..+ + +++++.|+++.. ++.|
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~-----~v~g~i~~G~~P~~~--~----spDg~~lyva~~~~~R~~~G~~~d~V 79 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAG-----RVLGMTDGGFLPNPV--V----ASDGSFFAHASTVYSRIARGKRTDYV 79 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCC-----EEEEEEEccCCCcee--E----CCCCCEEEEEeccccccccCCCCCEE
Confidence 44566666665 89999999887 555555444444432 2 234445555554 7999
Q ss_pred EEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-c-CCcEEEEEccccccccccccceEE
Q 020454 78 DILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-T-KGKASMRSIEVTKVSAESSCSTVK 155 (326)
Q Consensus 78 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~-~g~v~i~~~~~~~~~~~~~~~~~~ 155 (326)
.+||..+.+.+..+..-..+..+....+ ..+.+.+ ++..+++.. . ++.+.+.|+.... .+.
T Consensus 80 ~v~D~~t~~~~~~i~~p~~p~~~~~~~~-~~~~ls~--------dgk~l~V~n~~p~~~V~VvD~~~~k--------vv~ 142 (352)
T TIGR02658 80 EVIDPQTHLPIADIELPEGPRFLVGTYP-WMTSLTP--------DNKTLLFYQFSPSPAVGVVDLEGKA--------FVR 142 (352)
T ss_pred EEEECccCcEEeEEccCCCchhhccCcc-ceEEECC--------CCCEEEEecCCCCCEEEEEECCCCc--------EEE
Confidence 9999999998888775211100001111 1122222 444555544 2 5677777765443 222
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC-ceee-eeecC-CCCCCCCcCCCCceeeeEEeecCCCcEEEE
Q 020454 156 SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKI-WTAKP-PPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (326)
Q Consensus 156 ~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~-~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~ 232 (326)
...+ +....-+..+++..++ -+.|+......+.. ++.. ....- +..+..-...| .|.+. ++.++.+
T Consensus 143 ei~v--p~~~~vy~t~e~~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP------~~~~~-dg~~~~v 211 (352)
T TIGR02658 143 MMDV--PDCYHIFPTANDTFFM--HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP------AYSNK-SGRLVWP 211 (352)
T ss_pred EEeC--CCCcEEEEecCCccEE--EeecCceEEEEecCCCceEEeeeeeecCCccccccCC------ceEcC-CCcEEEE
Confidence 2222 1111111122111221 12333333322221 1111 11000 00000000111 44543 4556666
Q ss_pred EeCCCeEEEEeCCCCC----CceeEEee-------cCCceEEEEecCCCCeEEEEcC----------CCcEEEEECCCCe
Q 020454 233 GTNDHQVRLYDTSAQR----RPVMSFDF-------RETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGK 291 (326)
Q Consensus 233 ~~~dg~v~iwd~~~~~----~~~~~~~~-------~~~~i~~v~~s~~~~~l~~g~~----------dg~v~iwd~~~~~ 291 (326)
... |+|.+.|+.... .+...+.. ....+.-++++|+++.+++... .+.|.++|..+++
T Consensus 212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k 290 (352)
T TIGR02658 212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK 290 (352)
T ss_pred ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence 555 999999965321 22222211 2223444899999999987432 2479999999999
Q ss_pred EEEEEcceecceEEEEEECCCCC-EEEEec-cCcc
Q 020454 292 LLGCFIGKCSGSIRSIARHPTLP-IIASCG-FLEA 324 (326)
Q Consensus 292 ~~~~~~~~~~~~v~~l~~~p~~~-~l~s~s-~D~~ 324 (326)
.+..+.. ...+.+|+++||++ +|++.. .++.
T Consensus 291 vi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 291 RLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred EEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCc
Confidence 9998873 45899999999998 777655 4443
No 252
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=2.7e-10 Score=88.83 Aligned_cols=258 Identities=13% Similarity=0.147 Sum_probs=156.0
Q ss_pred CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc-----eeeeecccCCCC----CCCCCCCeeeeecccccccccC
Q 020454 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSG----AQPEDDGIVGLHLFKRQREESS 120 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~-----~~~~~~~~~~~~----~~~~~~~i~~l~~~~~~~~~~~ 120 (326)
+...+.++-++.. +.||++|...|.|.+|..+... +..+++.+...= .-.-...|..+.++.+.
T Consensus 25 ead~ItaVefd~t--g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t----- 97 (460)
T COG5170 25 EADKITAVEFDET--GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT----- 97 (460)
T ss_pred ccceeeEEEeccc--cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC-----
Confidence 3445566666544 4489999999999999875432 122222211000 00001235556666533
Q ss_pred CCCceEEEEecCCcEEEEEccccccc--------------cc---------------cccc-----eEEEEEccCCCceE
Q 020454 121 SRSRTLLTCTTKGKASMRSIEVTKVS--------------AE---------------SSCS-----TVKSWNVCASGTIA 166 (326)
Q Consensus 121 ~~~~~l~~~~~~g~v~i~~~~~~~~~--------------~~---------------~~~~-----~~~~~~~~~~~~v~ 166 (326)
....++..+.|.+|++|.+-..+.. .+ ..+. +-+++.-.|.-.|.
T Consensus 98 -~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 98 -GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred -CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 3456888899999999998654220 00 0011 11233233444688
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCceeeee---ecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT---AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (326)
Q Consensus 167 ~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd 243 (326)
+++++.+...+++ ..|-.|.+|++.-....+. ++.+.-..+ ..-|++..|+|.. .+.+.-.+..|.|++-|
T Consensus 177 SiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeL----teVItSaeFhp~~-cn~fmYSsSkG~Ikl~D 250 (460)
T COG5170 177 SISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEEL----TEVITSAEFHPEM-CNVFMYSSSKGEIKLND 250 (460)
T ss_pred eeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHH----HHHHhhcccCHhH-cceEEEecCCCcEEehh
Confidence 9999988887776 5778999999875443333 233221110 1237788999974 44788888899999999
Q ss_pred CCCCCCc-----eeE----------EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEccee-------
Q 020454 244 TSAQRRP-----VMS----------FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKC------- 300 (326)
Q Consensus 244 ~~~~~~~-----~~~----------~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~------- 300 (326)
+|...-+ +.. +..-.+.|..+.|+++|++|++-+.- +|++||.+.. .++.+++-|+
T Consensus 251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~ 329 (460)
T COG5170 251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELN 329 (460)
T ss_pred hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHH
Confidence 9943111 111 11123478899999999999986664 8999999864 4566665441
Q ss_pred ----cceE---EEEEECCCCCEEEEeccC
Q 020454 301 ----SGSI---RSIARHPTLPIIASCGFL 322 (326)
Q Consensus 301 ----~~~v---~~l~~~p~~~~l~s~s~D 322 (326)
...| ..+.|+-+...+.+||..
T Consensus 330 d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 330 DVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred hhhhccceeeeEEEEecCCcccccccccc
Confidence 1122 245677777777777754
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=5.1e-07 Score=72.44 Aligned_cols=268 Identities=12% Similarity=0.088 Sum_probs=157.0
Q ss_pred cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecC---CcEEEEeccc--cceeeeecccCCC
Q 020454 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN---GLTDILNPLN--GDLRVAISNAGDS 97 (326)
Q Consensus 23 ~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d---g~i~i~~~~~--~~~~~~~~~~~~~ 97 (326)
..-|.+|++.+. .|............. ...+ . .+++.+.|.++-.+ |.|-.|.+.. |++ ..+.....
T Consensus 15 s~gI~v~~ld~~-~g~l~~~~~v~~~~n-ptyl--~--~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln~~~~- 86 (346)
T COG2706 15 SQGIYVFNLDTK-TGELSLLQLVAELGN-PTYL--A--VNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLNRQTL- 86 (346)
T ss_pred CCceEEEEEeCc-ccccchhhhccccCC-CceE--E--ECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEeecccc-
Confidence 467999999866 344333323222222 2222 2 23445567776554 7788887764 454 22222110
Q ss_pred CCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccccccccccceEEEEEcc--------CCCceEEE
Q 020454 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVC--------ASGTIAFS 168 (326)
Q Consensus 98 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~ 168 (326)
.+ .+.+.++..+ ++..++++ ...|.|.++.+...... ...+...... ....+...
T Consensus 87 ---~g-~~p~yvsvd~--------~g~~vf~AnY~~g~v~v~p~~~dG~l----~~~v~~~~h~g~~p~~rQ~~~h~H~a 150 (346)
T COG2706 87 ---PG-SPPCYVSVDE--------DGRFVFVANYHSGSVSVYPLQADGSL----QPVVQVVKHTGSGPHERQESPHVHSA 150 (346)
T ss_pred ---CC-CCCeEEEECC--------CCCEEEEEEccCceEEEEEcccCCcc----ccceeeeecCCCCCCccccCCcccee
Confidence 11 2224455443 34455554 45688899988654321 1111111110 01237889
Q ss_pred EEcCCCCEEEEecCC-CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCCeEEEEeCCC
Q 020454 169 KVDISEKFSLFGGKG-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSA 246 (326)
Q Consensus 169 ~~~~~~~~l~sg~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg~v~iwd~~~ 246 (326)
.+.|++++|++.... ..|.+|++..++........ +........+.|+|+ +++.. ++--+++|.+|....
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~------v~~G~GPRHi~FHpn--~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE------VKPGAGPRHIVFHPN--GKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCccccccccc------cCCCCCcceEEEcCC--CcEEEEEeccCCEEEEEEEcC
Confidence 999999999886532 47999999866543322211 111234568899994 54544 445689999999876
Q ss_pred CCCceeEEe---------ecCCceEEEEecCCCCeEEEEcC-CCcEEEEECCC--CeE--EEEEcceecceEEEEEECCC
Q 020454 247 QRRPVMSFD---------FRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT--GKL--LGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 247 ~~~~~~~~~---------~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~--~~~--~~~~~~~~~~~v~~l~~~p~ 312 (326)
....+..++ ........|.+++||++|+++.. ...|.+|.+.. +++ +.....+ ...-+.+.++|+
T Consensus 223 ~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~ 301 (346)
T COG2706 223 AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPS 301 (346)
T ss_pred CCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCC
Confidence 423233333 12346788899999999998764 34788887763 332 2223332 334788999999
Q ss_pred CCEEEEeccCc
Q 020454 313 LPIIASCGFLE 323 (326)
Q Consensus 313 ~~~l~s~s~D~ 323 (326)
+++|+.++.|+
T Consensus 302 g~~Liaa~q~s 312 (346)
T COG2706 302 GRFLIAANQKS 312 (346)
T ss_pred CCEEEEEccCC
Confidence 99999988764
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=2.3e-10 Score=107.63 Aligned_cols=168 Identities=14% Similarity=0.159 Sum_probs=130.1
Q ss_pred CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 201 (326)
...+.++++.||.+++|...... ++..|+......+..+.|+.+|+.+..+..||.+.+|.+. .++....+
T Consensus 2219 ~~~~Yltgs~dgsv~~~~w~~~~--------~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~q 2289 (2439)
T KOG1064|consen 2219 SDPYYLTGSQDGSVRMFEWGHGQ--------QVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQ 2289 (2439)
T ss_pred CCceEEecCCCceEEEEeccCCC--------eEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceeccc
Confidence 66799999999999999865443 7888998877889999999999999999999999999987 55666656
Q ss_pred CCCCCCCCcCCCCceeeeEEeecCCCcEEEEE---eCCCeEEEEeCC--CCCCceeEEeecCCceEEEEecCCCCeEEEE
Q 020454 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG---TNDHQVRLYDTS--AQRRPVMSFDFRETPIKAVAEEPDSFNIYIG 276 (326)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~---~~dg~v~iwd~~--~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g 276 (326)
.|... .+.+.|.- ..+++. +.++.+.+||.. .+...+. ..|.+.++++++.|..+.|++|
T Consensus 2290 chnk~---------~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2290 CHNKA---------LSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cCCcc---------ccceeeee----hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEec
Confidence 65533 34556653 256665 357799999954 2223333 6899999999999999999999
Q ss_pred cCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 277 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
+.+|.|++||++..++.+.++. ++ ...++++++..|.
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccc
Confidence 9999999999998887776663 33 4456666666554
No 255
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.15 E-value=2.1e-06 Score=72.50 Aligned_cols=266 Identities=17% Similarity=0.150 Sum_probs=147.2
Q ss_pred CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEeccc-cceeeeeccc-----
Q 020454 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLN-GDLRVAISNA----- 94 (326)
Q Consensus 22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~-~~~~~~~~~~----- 94 (326)
..|.|..|++... .+..+...+.......-+.+ + -++.+++|+++. .+|+|.++++.. +.+.......
T Consensus 60 ~~g~v~~~~i~~~-~g~L~~~~~~~~~g~~p~~i--~--~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~ 134 (345)
T PF10282_consen 60 DSGGVSSYRIDPD-TGTLTLLNSVPSGGSSPCHI--A--VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS 134 (345)
T ss_dssp TTTEEEEEEEETT-TTEEEEEEEEEESSSCEEEE--E--ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE
T ss_pred CCCCEEEEEECCC-cceeEEeeeeccCCCCcEEE--E--EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC
Confidence 3678888888764 24443433333222222222 2 234555666664 689999999975 4443332211
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (326)
.+............+.+.+ +++.+++. -....|.+|+++..... -.......+.....-+.+.|+|+
T Consensus 135 g~~~~rq~~~h~H~v~~~p--------dg~~v~v~dlG~D~v~~~~~~~~~~~----l~~~~~~~~~~G~GPRh~~f~pd 202 (345)
T PF10282_consen 135 GPNPDRQEGPHPHQVVFSP--------DGRFVYVPDLGADRVYVYDIDDDTGK----LTPVDSIKVPPGSGPRHLAFSPD 202 (345)
T ss_dssp ESSTTTTSSTCEEEEEE-T--------TSSEEEEEETTTTEEEEEEE-TTS-T----EEEEEEEECSTTSSEEEEEE-TT
T ss_pred CCcccccccccceeEEECC--------CCCEEEEEecCCCEEEEEEEeCCCce----EEEeeccccccCCCCcEEEEcCC
Confidence 1111011112233344333 44455544 34567888887654310 11133445666778999999999
Q ss_pred CCEEEE-ecCCCeEEEEECC--Ccee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE-eCCCeEEEEeCCCC
Q 020454 174 EKFSLF-GGKGVEVNVWDLD--KCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQ 247 (326)
Q Consensus 174 ~~~l~s-g~~d~~i~iwd~~--~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~-~~dg~v~iwd~~~~ 247 (326)
++++++ .-.++.|.+|++. +++. +......... .........+.++| ++++|.+. ...+.|.+|++...
T Consensus 203 g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~i~isp--dg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 203 GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG---FTGENAPAEIAISP--DGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT---SCSSSSEEEEEE-T--TSSEEEEEECTTTEEEEEEECTT
T ss_pred cCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc---ccccCCceeEEEec--CCCEEEEEeccCCEEEEEEEecC
Confidence 987754 4567889999988 3322 2222222111 11113577889988 56565554 46779999998432
Q ss_pred C-C--ceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEEC--CCCeEEEEEcceecceEEEEEE
Q 020454 248 R-R--PVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDI--RTGKLLGCFIGKCSGSIRSIAR 309 (326)
Q Consensus 248 ~-~--~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~--~~~~~~~~~~~~~~~~v~~l~~ 309 (326)
. . .+..+.......+.++++|+|++|+++. .++.|.+|++ ++|++...-.........||.|
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 1 2 2233434445578999999999999776 5678999976 5676654332111345556655
No 256
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=1.8e-10 Score=96.58 Aligned_cols=176 Identities=12% Similarity=0.124 Sum_probs=124.7
Q ss_pred CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE-ccCCCceEEEEEcCCCCEEEE
Q 020454 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLF 179 (326)
Q Consensus 101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s 179 (326)
+|+..|..+.... +.+.+++++.|.++++|++..+....+. ...-|. ..+..+|..+.|-.+.+++++
T Consensus 733 GH~~~iRai~Aid--------NENSFiSASkDKTVKLWSik~EgD~~~t---saCQfTY~aHkk~i~~igfL~~lr~i~S 801 (1034)
T KOG4190|consen 733 GHQEKIRAIAAID--------NENSFISASKDKTVKLWSIKPEGDEIGT---SACQFTYQAHKKPIHDIGFLADLRSIAS 801 (1034)
T ss_pred CcHHHhHHHHhcc--------cccceeeccCCceEEEEEeccccCcccc---ceeeeEhhhccCcccceeeeeccceeee
Confidence 4556666665554 5678999999999999999865432221 112232 246778999999988888765
Q ss_pred ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCCeEEEEeCCCCCCceeEEe---
Q 020454 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRRPVMSFD--- 255 (326)
Q Consensus 180 g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~--- 255 (326)
.|+.|++||.--++++.+....+.+ ..+..+...|+-+...+. .++...+|+++|.|.. .-+.+++
T Consensus 802 --cD~giHlWDPFigr~Laq~~dapk~-------~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcn 871 (1034)
T KOG4190|consen 802 --CDGGIHLWDPFIGRLLAQMEDAPKE-------GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-EWTCELKVCN 871 (1034)
T ss_pred --ccCcceeecccccchhHhhhcCccc-------CCCceeEecccCcchheeeeccchhhheeeecccc-cceeeEEecc
Confidence 6889999998877776644332222 223444555543333444 4478899999999976 3344444
Q ss_pred --ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 256 --FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 256 --~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
+.+..+++++..+.|+.+++|-.+|.|.+.|.++|+.+..++
T Consensus 872 a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 872 APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 334568899999999999999999999999999999887665
No 257
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.11 E-value=2.6e-09 Score=81.33 Aligned_cols=198 Identities=17% Similarity=0.105 Sum_probs=118.6
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccc---cccCCCCceEEEEecCCcEEEEEcccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQR---EESSSRSRTLLTCTTKGKASMRSIEVT 143 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~---~~~~~~~~~l~~~~~~g~v~i~~~~~~ 143 (326)
.|+++..++.+..+..-.+......+. ....++...+++ +... .+++-.++.+++++.||.+.+.+.+..
T Consensus 49 ~lf~~e~~~~~ss~g~~r~~~~~~~~r------t~~i~~~~~~a~-~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~ 121 (319)
T KOG4714|consen 49 ILFTGETSSQIISLGKGRGRCISLWER------DDGIDPFKVLAK-NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD 121 (319)
T ss_pred eeecccchhheeeeccceEEEechhhc------ccCcCceeeeec-cCCCCCcccccccCCceEecCCCceEEEEechHH
Confidence 488888888887776654444333322 122344444441 1110 111224678999999999999986652
Q ss_pred ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC-----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceee
Q 020454 144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS 218 (326)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (326)
..+ +..+.. .+. .-.+...-..++++.+++-. +..++|+++..+.+.. .......|++
T Consensus 122 ~~~----~~~i~~---~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~---------~~~~~~~v~~ 184 (319)
T KOG4714|consen 122 LAL----MSRIPS---IHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP---------SKKALDAVTA 184 (319)
T ss_pred Hhh----hhhccc---ccc-cccccceeecccEEecCCcceEeeccceeeecccccccccc---------cccccccchh
Confidence 110 000000 000 01111122234555443211 2334444442221111 1111234888
Q ss_pred eEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCC
Q 020454 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 219 ~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~ 289 (326)
++-+|.. .+++++|+.||.+-+||.|....|+..+..|+.+|..+-|+|. +..|+++++||.+--||..+
T Consensus 185 l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQ-QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhCCccc-ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 8888874 4488999999999999999876678888899999999999995 78999999999999999874
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=7.5e-08 Score=81.10 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=89.0
Q ss_pred CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEE--EeCCCeEEEEeCCCCCCceeEEeecCCc
Q 020454 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (326)
Q Consensus 183 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 260 (326)
+.++++.++........+. ..++|.++.|+|+ +..|++ |-+--.+.|||++- .++.. ..+++
T Consensus 250 Eq~Lyll~t~g~s~~V~L~----------k~GPVhdv~W~~s--~~EF~VvyGfMPAkvtifnlr~--~~v~d--f~egp 313 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLL----------KEGPVHDVTWSPS--GREFAVVYGFMPAKVTIFNLRG--KPVFD--FPEGP 313 (566)
T ss_pred cceEEEEEecCceEEEecC----------CCCCceEEEECCC--CCEEEEEEecccceEEEEcCCC--CEeEe--CCCCC
Confidence 4568888877444444322 2367999999984 445554 45566899999994 35544 46778
Q ss_pred eEEEEecCCCCeEEEEcC---CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454 261 IKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 261 i~~v~~s~~~~~l~~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
-+++-|+|.|++|+.++- -|.|-|||+.+.+++.++... .-+-.+|+|||++++|+..
T Consensus 314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred ccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC---CceEEEEcCCCcEEEEEec
Confidence 899999999999985554 488999999998888888753 4556799999999999863
No 259
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=3.9e-08 Score=85.72 Aligned_cols=146 Identities=14% Similarity=0.070 Sum_probs=100.0
Q ss_pred CCCceEEEEEcCCCCEEEEecC---CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE-EEEeCC
Q 020454 161 ASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTND 236 (326)
Q Consensus 161 ~~~~v~~~~~~~~~~~l~sg~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-~~~~~d 236 (326)
+...+...+|+|+++.|+..+. +..|.+||+.+++.... .... ..+....|+| +++.| ++.+.+
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-~~~~---------g~~~~~~~SP--DG~~la~~~~~~ 267 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV-GNFP---------GMTFAPRFSP--DGRKVVMSLSQG 267 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe-ecCC---------CcccCcEECC--CCCEEEEEEecC
Confidence 3567999999999998877653 46799999988765322 2111 2245668988 45555 455655
Q ss_pred Ce--EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCC--cEEEEECCCCeEEEEEcceecceEEEEEECC
Q 020454 237 HQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (326)
Q Consensus 237 g~--v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 311 (326)
+. |++||+.++ . ...+..+.......+|+|||+.|+..+ .+| .|+++|+.+++.. .+..+ .+.+....|+|
T Consensus 268 g~~~Iy~~d~~~~-~-~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~-~~~~~~~~~Sp 343 (435)
T PRK05137 268 GNTDIYTMDLRSG-T-TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG-GGRYSTPVWSP 343 (435)
T ss_pred CCceEEEEECCCC-c-eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-CCcccCeEECC
Confidence 54 777788765 3 455555555667789999999888655 333 5888898766543 33333 45677789999
Q ss_pred CCCEEEEeccC
Q 020454 312 TLPIIASCGFL 322 (326)
Q Consensus 312 ~~~~l~s~s~D 322 (326)
+++.|+..+.+
T Consensus 344 dG~~ia~~~~~ 354 (435)
T PRK05137 344 RGDLIAFTKQG 354 (435)
T ss_pred CCCEEEEEEcC
Confidence 99999877654
No 260
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.08 E-value=7.8e-07 Score=69.30 Aligned_cols=244 Identities=18% Similarity=0.154 Sum_probs=135.6
Q ss_pred CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (326)
Q Consensus 14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~ 93 (326)
.-++++.-+|..|.+-..+..-.-+..-++.-.++...=.-+ .|++++.+||.+...|+|++||+...+ +..+..
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl----~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p 82 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKL----AWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPP 82 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEE----EECCCCcEEEEEcCCCeEEEEecccce-eEEcCc
Confidence 356777777777777776654222222222223333332323 345677799999999999999995433 233322
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (326)
..... ..-..+|.++.+.+... +..-...|++....|.++-|-+...... +......--+.......|.++.++|.
T Consensus 83 ~~~~~-~d~~~Aiagl~Fl~~~~--s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q-~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 83 AMSFP-GDLSDAIAGLIFLEYKK--SAQWSYELLVINYRGQLRSYLVSVGTNQ-GYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred ccccC-CccccceeeeEeecccc--ccccceeEEEEeccceeeeEEEEcccCC-cceeeEEEEecccCCCceeEEEEcCC
Confidence 11000 01235677777655331 1111346888888888877765321100 00111111122233567999999999
Q ss_pred CCEEEEecCCCe-----------EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCe----
Q 020454 174 EKFSLFGGKGVE-----------VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ---- 238 (326)
Q Consensus 174 ~~~l~sg~~d~~-----------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~---- 238 (326)
.++|++||.... +..|.+-++.+-. ..++...|+.
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyy------------------------------k~v~~~~~~~~~~~ 208 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYY------------------------------KQVTSSEDDITASS 208 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcE------------------------------EEccccCccccccc
Confidence 999888876433 2222222221111 1111111211
Q ss_pred --EEEEeCCCCCCceeEE-eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454 239 --VRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (326)
Q Consensus 239 --v~iwd~~~~~~~~~~~-~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 298 (326)
-.+|.+-+. + +... ......|..|..||||..|++.+.+|.|.+|++.+.++...+.-
T Consensus 209 ~~~~~~~~~~~-~-~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 209 KRRGLLRIPSF-K-FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred cccceeeccce-e-eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 122322221 1 1111 22456899999999999999999999999999999888777664
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.07 E-value=4.7e-08 Score=77.56 Aligned_cols=227 Identities=11% Similarity=0.148 Sum_probs=144.1
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccC--CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc----ccee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGD--PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN----GDLR 88 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~----~~~~ 88 (326)
--+++.++|-.+|||--... -+.|.. +..+..+.+.++. .+...|++|-.+|++.-+.+.. ..+.
T Consensus 37 ~gv~~~s~drtvrv~lkrds-------~q~wpsI~~~mP~~~~~~~y~--~e~~~L~vg~~ngtvtefs~sedfnkm~~~ 107 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWLKRDS-------GQYWPSIYHYMPSPCSAMEYV--SESRRLYVGQDNGTVTEFALSEDFNKMTFL 107 (404)
T ss_pred CCeEEccccceeeeEEeccc-------cccCchhhhhCCCCceEeeee--ccceEEEEEEecceEEEEEhhhhhhhcchh
Confidence 34778888899999975533 223332 2233344444443 3344799999999999997642 1122
Q ss_pred eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 168 (326)
+.+ ..|...+..+.+.. ....+++.+.|..+.-.-.+... .+.-+.... ....+
T Consensus 108 r~~--------~~h~~~v~~~if~~--------~~e~V~s~~~dk~~~~hc~e~~~--------~lg~Y~~~~--~~t~~ 161 (404)
T KOG1409|consen 108 KDY--------LAHQARVSAIVFSL--------THEWVLSTGKDKQFAWHCTESGN--------RLGGYNFET--PASAL 161 (404)
T ss_pred hhh--------hhhhcceeeEEecC--------CceeEEEeccccceEEEeeccCC--------cccceEeec--cCCCC
Confidence 221 15557777666544 44678888888776533322211 111111110 01111
Q ss_pred EEcCCCCEEEEecCCCeEEEEECC--CceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454 169 KVDISEKFSLFGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (326)
Q Consensus 169 ~~~~~~~~l~sg~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~ 246 (326)
.+.- .+...|...+.|.+-.+. ...++..+.+|. ..+++.+|.|. ..+|++|..|..+.+||+-.
T Consensus 162 ~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~---------~~~~~l~Wd~~--~~~LfSg~~d~~vi~wdigg 228 (404)
T KOG1409|consen 162 QFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHT---------GEVTCLKWDPG--QRLLFSGASDHSVIMWDIGG 228 (404)
T ss_pred ceee--EEEEecccccceEEEEEeecCCceEEEEcCcc---------cceEEEEEcCC--CcEEEeccccCceEEEeccC
Confidence 1111 155566666776665443 345566666655 55889999884 34999999999999999886
Q ss_pred CCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 247 ~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
.+.......+|...|..++.-+.-+.+++++.||.|.+|+++.
T Consensus 229 ~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 229 RKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 5455677888999999998888889999999999999999874
No 262
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.07 E-value=1.3e-07 Score=81.15 Aligned_cols=231 Identities=14% Similarity=0.127 Sum_probs=130.6
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-+++.++.+|.+..+|..++ ++ .|....... +.+.... .+..++++..+|.|..||.++++.+..+...
T Consensus 106 ~~v~v~~~~g~l~ald~~tG-----~~--~W~~~~~~~-~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 174 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDG-----KE--LWRAKLSSE-VLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRV 174 (377)
T ss_pred CEEEEEcCCCEEEEEECCCC-----cE--eeeeccCce-eecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccC
Confidence 56888889999999999877 44 333221111 1111111 1235888889999999999999876665532
Q ss_pred CCCCC-CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc---------------------------
Q 020454 95 GDSGA-QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS--------------------------- 146 (326)
Q Consensus 95 ~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~--------------------------- 146 (326)
.+... .....++ . .++.++.+..+|.+..+|.......
T Consensus 175 ~~~~~~~~~~sp~----~----------~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~ 240 (377)
T TIGR03300 175 TPALTLRGSASPV----I----------ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD 240 (377)
T ss_pred CCceeecCCCCCE----E----------ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE
Confidence 11000 0000011 0 1234555555555555554321100
Q ss_pred -----cccccceEEEEEccCCCceEEEEE------cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCc
Q 020454 147 -----AESSCSTVKSWNVCASGTIAFSKV------DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW 215 (326)
Q Consensus 147 -----~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (326)
....++.+..++......+..... ...+..++.++.++.|..+|..+++.++.........
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~-------- 312 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ-------- 312 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCc--------
Confidence 001233444444443333332221 1245677788899999999999998887653221111
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEE-EEecCCCCeEEEEcCCCcEEEE
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASV 285 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~-v~~s~~~~~l~~g~~dg~v~iw 285 (326)
..+... .+..+++++.+|.|+++|..++ +.+.+++.+...+.. .++ -+..|+.++.||.|+.|
T Consensus 313 ~ssp~i----~g~~l~~~~~~G~l~~~d~~tG-~~~~~~~~~~~~~~~sp~~--~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 313 LTAPAV----VGGYLVVGDFEGYLHWLSREDG-SFVARLKTDGSGIASPPVV--VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred cccCEE----ECCEEEEEeCCCEEEEEECCCC-CEEEEEEcCCCccccCCEE--ECCEEEEEeCCceEEEe
Confidence 111112 2338889999999999999987 557777765543322 222 23468899999999876
No 263
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.05 E-value=9e-07 Score=70.71 Aligned_cols=229 Identities=16% Similarity=0.178 Sum_probs=133.0
Q ss_pred CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCC
Q 020454 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP 101 (326)
Q Consensus 22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 101 (326)
++|.|..||..++ +..-+..-............ ..++++++++.++.|..||..+|+.+..+...
T Consensus 1 ~~g~l~~~d~~tG-----~~~W~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~------- 65 (238)
T PF13360_consen 1 DDGTLSALDPRTG-----KELWSYDLGPGIGGPVATAV---PDGGRVYVASGDGNLYALDAKTGKVLWRFDLP------- 65 (238)
T ss_dssp -TSEEEEEETTTT-----EEEEEEECSSSCSSEEETEE---EETTEEEEEETTSEEEEEETTTSEEEEEEECS-------
T ss_pred CCCEEEEEECCCC-----CEEEEEECCCCCCCccceEE---EeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-------
Confidence 4688999998777 44323322111122121111 12346888899999999999999987777641
Q ss_pred CCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc-cCC----CceEEEEEcCCCCE
Q 020454 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CAS----GTIAFSKVDISEKF 176 (326)
Q Consensus 102 ~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~----~~v~~~~~~~~~~~ 176 (326)
+++.... .. .++.++.++.++.+..+|..... .+|.. ... .....+.....++.
T Consensus 66 --~~~~~~~-~~--------~~~~v~v~~~~~~l~~~d~~tG~----------~~W~~~~~~~~~~~~~~~~~~~~~~~~ 124 (238)
T PF13360_consen 66 --GPISGAP-VV--------DGGRVYVGTSDGSLYALDAKTGK----------VLWSIYLTSSPPAGVRSSSSPAVDGDR 124 (238)
T ss_dssp --SCGGSGE-EE--------ETTEEEEEETTSEEEEEETTTSC----------EEEEEEE-SSCTCSTB--SEEEEETTE
T ss_pred --cccccee-ee--------cccccccccceeeeEecccCCcc----------eeeeeccccccccccccccCceEecCE
Confidence 1211111 11 45678888888888888855433 24442 111 11122223334777
Q ss_pred EEEecCCCeEEEEECCCceeeeeecCCCCCCCC-cC-CCCceeeeEEeecCCCcEEEEEeCCCe-EEEEeCCCCCCceeE
Q 020454 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG-IF-TPTWFTSAAFLSIDDHRKFVAGTNDHQ-VRLYDTSAQRRPVMS 253 (326)
Q Consensus 177 l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~p~~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~ 253 (326)
++.+..++.|..+|+++++.++........... +. .......+.+. ++ .++.++.++. +.+ |+.+++ .+.+
T Consensus 125 ~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~v~~~~~~g~~~~~-d~~tg~-~~w~ 198 (238)
T PF13360_consen 125 LYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS---DG-RVYVSSGDGRVVAV-DLATGE-KLWS 198 (238)
T ss_dssp EEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC---TT-EEEEECCTSSEEEE-ETTTTE-EEEE
T ss_pred EEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE---CC-EEEEEcCCCeEEEE-ECCCCC-EEEE
Confidence 888888999999999999998887653221100 00 00001111221 34 6777777775 555 999873 3333
Q ss_pred EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE
Q 020454 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC 295 (326)
Q Consensus 254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~ 295 (326)
.. ...+.. .....+..|++++.++.|..||+++|+.+.+
T Consensus 199 ~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 199 KP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred ec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 22 233333 1346778888888999999999999998753
No 264
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.05 E-value=3.3e-07 Score=78.92 Aligned_cols=264 Identities=15% Similarity=0.085 Sum_probs=141.0
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCC-ceEEE------EEeeeCCCCCeEEEEecCCcEEEEeccccce
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLA------ASIDDSQNDPLLAVARKNGLTDILNPLNGDL 87 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 87 (326)
-++.+++.+|.+.-+|..++ ++ .|...-.. ..... ++-.....+..+++++.+|.+..+|.++|+.
T Consensus 70 ~~vy~~~~~g~l~ald~~tG-----~~--~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~ 142 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTG-----KE--IWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV 142 (394)
T ss_pred CEEEEECCCCeEEEEECCCC-----cE--eeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC
Confidence 57888888999999998877 33 23211110 00000 0000001233588888999999999999998
Q ss_pred eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc----------------c----
Q 020454 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS----------------A---- 147 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~----------------~---- 147 (326)
+........ ....++. .++.++.+..+|.+..+|.+..+.. +
T Consensus 143 ~W~~~~~~~----~~ssP~v--------------~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~ 204 (394)
T PRK11138 143 AWQTKVAGE----ALSRPVV--------------SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA 204 (394)
T ss_pred cccccCCCc----eecCCEE--------------ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE
Confidence 776553110 0011111 2345666666666655554322110 0
Q ss_pred ------ccccceEEEEEccCCCceEEE-----------------EEcC--CCCEEEEecCCCeEEEEECCCceeeeeecC
Q 020454 148 ------ESSCSTVKSWNVCASGTIAFS-----------------KVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (326)
Q Consensus 148 ------~~~~~~~~~~~~~~~~~v~~~-----------------~~~~--~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 202 (326)
+..++.+..++......+... ..+| .+..++.++.++.+..+|..+++.+++...
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 284 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY 284 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC
Confidence 001122222222211111111 1112 234555566778888888888877766432
Q ss_pred CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec-CCceEEEEecCCCCeEEEEcCCCc
Q 020454 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGD 281 (326)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~i~~v~~s~~~~~l~~g~~dg~ 281 (326)
.. ...+.. .+..++.++.+|.+..+|..++ +.+...... .....+... .+.+|+.++.+|.
T Consensus 285 ~~-----------~~~~~~----~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~ 346 (394)
T PRK11138 285 GS-----------VNDFAV----DGGRIYLVDQNDRVYALDTRGG-VELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGY 346 (394)
T ss_pred CC-----------ccCcEE----ECCEEEEEcCCCeEEEEECCCC-cEEEcccccCCCcccCCEE--ECCEEEEEeCCCE
Confidence 11 001111 2337778888999999999877 334333211 111222222 2568889999999
Q ss_pred EEEEECCCCeEEEEEcceecceEEE-EEECCCCCEEEEeccCcc
Q 020454 282 LASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGFLEA 324 (326)
Q Consensus 282 v~iwd~~~~~~~~~~~~~~~~~v~~-l~~~p~~~~l~s~s~D~~ 324 (326)
++++|..+|+.+.+++-. ...+.+ ..+ .+..|+.++.||.
T Consensus 347 l~~ld~~tG~~~~~~~~~-~~~~~s~P~~--~~~~l~v~t~~G~ 387 (394)
T PRK11138 347 LHWINREDGRFVAQQKVD-SSGFLSEPVV--ADDKLLIQARDGT 387 (394)
T ss_pred EEEEECCCCCEEEEEEcC-CCcceeCCEE--ECCEEEEEeCCce
Confidence 999999999998877632 333332 122 2446777888875
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=3.6e-07 Score=79.75 Aligned_cols=203 Identities=11% Similarity=0.043 Sum_probs=115.3
Q ss_pred cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC---CcEEEEEccccccccccccc
Q 020454 76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEVTKVSAESSCS 152 (326)
Q Consensus 76 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~---g~v~i~~~~~~~~~~~~~~~ 152 (326)
.|.++|...++. ..+. .+...+....+.+ ++..|+..+.+ ..|.+|++....
T Consensus 180 ~l~~~d~~g~~~-~~l~--------~~~~~~~~p~wSp--------DG~~la~~s~~~~~~~l~~~~l~~g~-------- 234 (430)
T PRK00178 180 TLQRSDYDGARA-VTLL--------QSREPILSPRWSP--------DGKRIAYVSFEQKRPRIFVQNLDTGR-------- 234 (430)
T ss_pred EEEEECCCCCCc-eEEe--------cCCCceeeeeECC--------CCCEEEEEEcCCCCCEEEEEECCCCC--------
Confidence 477778754433 2222 1224555556544 45566555433 357777765322
Q ss_pred eEEEEEccCCCceEEEEEcCCCCEEE-EecCCC--eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454 153 TVKSWNVCASGTIAFSKVDISEKFSL-FGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (326)
Q Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 229 (326)
..++.. ..+......|+|+|+.|+ +...++ .|.+||+.+++... +..+. .......|+| +++.
T Consensus 235 ~~~l~~--~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~---------~~~~~~~~sp--Dg~~ 300 (430)
T PRK00178 235 REQITN--FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHP---------AIDTEPFWGK--DGRT 300 (430)
T ss_pred EEEccC--CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCC---------CCcCCeEECC--CCCE
Confidence 111111 123445688999998776 444444 58888998765432 22211 1234567887 4555
Q ss_pred EEEEe-CCC--eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-CC--cEEEEECCCCeEEEEEcceecce
Q 020454 230 FVAGT-NDH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGS 303 (326)
Q Consensus 230 l~~~~-~dg--~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg--~v~iwd~~~~~~~~~~~~~~~~~ 303 (326)
++..+ .++ .|+++|+.++ + ...+...........|+|+|++|+..+. ++ .|.+||+.+++... +.. ...
T Consensus 301 i~f~s~~~g~~~iy~~d~~~g-~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~--~~~ 375 (430)
T PRK00178 301 LYFTSDRGGKPQIYKVNVNGG-R-AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD--TSL 375 (430)
T ss_pred EEEEECCCCCceEEEEECCCC-C-EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC--CCC
Confidence 55444 333 5777787765 2 3333333233445689999999986554 33 48889998876532 221 222
Q ss_pred EEEEEECCCCCEEEEeccC
Q 020454 304 IRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 304 v~~l~~~p~~~~l~s~s~D 322 (326)
.....|+|+++.|+..+.+
T Consensus 376 ~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 376 DESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CCCceECCCCCEEEEEEec
Confidence 3356899999988776654
No 266
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.00 E-value=9.5e-07 Score=73.38 Aligned_cols=220 Identities=14% Similarity=0.104 Sum_probs=137.5
Q ss_pred EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeee-cccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLH-LFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (326)
Q Consensus 68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~ 146 (326)
-++-+..|.|.+||.++.++ ..+..-.+.........+..-. +.+.. + ..++-+++--+-|+..+.+.....
T Consensus 280 rIvFq~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledf---a-~~~Gd~ia~VSRGkaFi~~~~~~~-- 352 (668)
T COG4946 280 RIVFQNAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDF---A-VVNGDYIALVSRGKAFIMRPWDGY-- 352 (668)
T ss_pred EEEEecCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhh---c-cCCCcEEEEEecCcEEEECCCCCe--
Confidence 34556679999999977665 3332210111011111111111 11100 0 122334444456666766533221
Q ss_pred cccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCC-eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC
Q 020454 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (326)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 225 (326)
..++.+.+.|.-..+..+++-++.|..|+ .+-|||.++++......+. ..|.++..+|
T Consensus 353 ---------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l----------g~I~av~vs~-- 411 (668)
T COG4946 353 ---------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL----------GNIEAVKVSP-- 411 (668)
T ss_pred ---------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc----------cceEEEEEcC--
Confidence 12334556677777777777888999998 8999999988865543332 3477888887
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC----cEEEEECCCCeEEEEEcceec
Q 020454 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG----DLASVDIRTGKLLGCFIGKCS 301 (326)
Q Consensus 226 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg----~v~iwd~~~~~~~~~~~~~~~ 301 (326)
+|+.++++.....+-++|+.++ .+...-+...+-|+.+.|||+++++|-+--+| .|+++|+.+++....-. . .
T Consensus 412 dGK~~vvaNdr~el~vididng-nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~-t 488 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNG-NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-P-T 488 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCC-CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-C-c
Confidence 6778999988889999999987 33333334567899999999999999766665 68999999887654332 1 2
Q ss_pred ceEEEEEECCCCCEEEE
Q 020454 302 GSIRSIARHPTLPIIAS 318 (326)
Q Consensus 302 ~~v~~l~~~p~~~~l~s 318 (326)
+-=.+-+|.|++++|.-
T Consensus 489 a~DfsPaFD~d~ryLYf 505 (668)
T COG4946 489 AYDFSPAFDPDGRYLYF 505 (668)
T ss_pred ccccCcccCCCCcEEEE
Confidence 22334578888886643
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.00 E-value=8.6e-08 Score=76.10 Aligned_cols=224 Identities=11% Similarity=0.111 Sum_probs=151.5
Q ss_pred eEEEEecCCcEEEE-eccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc
Q 020454 67 LLAVARKNGLTDIL-NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (326)
Q Consensus 67 ~l~~g~~dg~i~i~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~ 145 (326)
-+++.+.|.+++|| +.+.+++-..+... ...++..+.+.. ....|+.+-.+|.+.-+.+...-.
T Consensus 38 gv~~~s~drtvrv~lkrds~q~wpsI~~~-------mP~~~~~~~y~~--------e~~~L~vg~~ngtvtefs~sedfn 102 (404)
T KOG1409|consen 38 GVISVSEDRTVRVWLKRDSGQYWPSIYHY-------MPSPCSAMEYVS--------ESRRLYVGQDNGTVTEFALSEDFN 102 (404)
T ss_pred CeEEccccceeeeEEeccccccCchhhhh-------CCCCceEeeeec--------cceEEEEEEecceEEEEEhhhhhh
Confidence 38999999999999 44566665555542 224666666544 455788889999988777553210
Q ss_pred ccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC
Q 020454 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (326)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 225 (326)
+...++.| ..+...+..+-|+-...++++.+.|..+.--=.+.+..+-..... .+.++..|.-
T Consensus 103 ----km~~~r~~-~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~----------~~~t~~~~d~-- 165 (404)
T KOG1409|consen 103 ----KMTFLKDY-LAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE----------TPASALQFDA-- 165 (404)
T ss_pred ----hcchhhhh-hhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee----------ccCCCCceee--
Confidence 11133333 356778889989888899999999977744333333322111000 0111112211
Q ss_pred CCcEEEEEeCCCeEEEEeCC-CCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe-EEEEEcceecce
Q 020454 226 DHRKFVAGTNDHQVRLYDTS-AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGS 303 (326)
Q Consensus 226 ~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~ 303 (326)
. +...|-..|.|.+-.+. +.-.++.++.+|...+++++|.|....+++|..|..+.+||+--.+ ..+...+| ...
T Consensus 166 ~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh-~~k 242 (404)
T KOG1409|consen 166 L--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH-NDK 242 (404)
T ss_pred E--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc-hhh
Confidence 1 44556666766665543 2235688899999999999999999999999999999999997543 34566777 889
Q ss_pred EEEEEECCCCCEEEEeccCccC
Q 020454 304 IRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 304 v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
|..+..-+.-+.+++++.||-+
T Consensus 243 V~~l~~~~~t~~l~S~~edg~i 264 (404)
T KOG1409|consen 243 VQALSYAQHTRQLISCGEDGGI 264 (404)
T ss_pred hhhhhhhhhheeeeeccCCCeE
Confidence 9999888888899999999853
No 268
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.99 E-value=4.4e-06 Score=67.09 Aligned_cols=213 Identities=18% Similarity=0.143 Sum_probs=132.7
Q ss_pred CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~ 143 (326)
.+.++++....+.|..|+..+++. ..+.. ....++.... .++.++.+...+. .++|....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~-~~~~~----------~~~~G~~~~~--------~~g~l~v~~~~~~-~~~d~~~g 70 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEV-EVIDL----------PGPNGMAFDR--------PDGRLYVADSGGI-AVVDPDTG 70 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEE-EEEES----------SSEEEEEEEC--------TTSEEEEEETTCE-EEEETTTT
T ss_pred CCEEEEEEcCCCEEEEEECCCCeE-EEEec----------CCCceEEEEc--------cCCEEEEEEcCce-EEEecCCC
Confidence 445677777789999999976665 33332 1255566542 3467777776555 44465543
Q ss_pred ccccccccceEEEEEc---c-CCCceEEEEEcCCCCEEEEecCC--------CeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454 144 KVSAESSCSTVKSWNV---C-ASGTIAFSKVDISEKFSLFGGKG--------VEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 144 ~~~~~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~sg~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (326)
. ...+... . .....+.++++++|++.++.... +.|..++.. ++........
T Consensus 71 ~--------~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-------- 133 (246)
T PF08450_consen 71 K--------VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-------- 133 (246)
T ss_dssp E--------EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE--------
T ss_pred c--------EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc--------
Confidence 2 1112222 1 23468899999999977765433 457777766 4432222211
Q ss_pred CCCceeeeEEeecCCCcE-EEEEeCCCeEEEEeCCCCCCce---eEE-eecC--CceEEEEecCCCCeEEEEcCCCcEEE
Q 020454 212 TPTWFTSAAFLSIDDHRK-FVAGTNDHQVRLYDTSAQRRPV---MSF-DFRE--TPIKAVAEEPDSFNIYIGNGSGDLAS 284 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~-l~~~~~dg~v~iwd~~~~~~~~---~~~-~~~~--~~i~~v~~s~~~~~l~~g~~dg~v~i 284 (326)
...+.++|+| +++. +++-+..+.|..|++......+ ..+ .... ...-.+++..+|+..++....+.|.+
T Consensus 134 --~~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~ 209 (246)
T PF08450_consen 134 --GFPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVV 209 (246)
T ss_dssp --SSEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEE
T ss_pred --ccccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEE
Confidence 2356899998 4444 4567888999999986432211 112 1222 24778999999998888788899999
Q ss_pred EECCCCeEEEEEcceecceEEEEEEC-CCCCEEEEe
Q 020454 285 VDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASC 319 (326)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~v~~l~~~-p~~~~l~s~ 319 (326)
+|.+ |+++..+... ...+++++|. |+...|+..
T Consensus 210 ~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 210 FDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEE
T ss_pred ECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEE
Confidence 9987 9988888765 5689999994 665555544
No 269
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=3.4e-08 Score=77.41 Aligned_cols=263 Identities=11% Similarity=0.121 Sum_probs=143.8
Q ss_pred eeeeeecCcccEEEEEecCCcCCCc-ceeeeccCC----------CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVP-KVVERWGDP----------HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL 83 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~ 83 (326)
.-+.||+..|.|.+++-+.. .+.. +....|..+ +-.+-+.++-|..+.....++....|.+|++|.+.
T Consensus 39 ~YlatGDkgGRVvlfer~~s-~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiy 117 (460)
T COG5170 39 LYLATGDKGGRVVLFEREKS-YGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIY 117 (460)
T ss_pred ceEeecCCCceEEEeecccc-cccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeee
Confidence 56888999999999986654 1111 111112211 11233446777777777789999999999999986
Q ss_pred ccceeeeecccCCCCC-CCCCCCeeeeeccc---------------------ccc----cccCCCCceEEEEecCCcEEE
Q 020454 84 NGDLRVAISNAGDSGA-QPEDDGIVGLHLFK---------------------RQR----EESSSRSRTLLTCTTKGKASM 137 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~---------------------~~~----~~~~~~~~~l~~~~~~g~v~i 137 (326)
+..+....+....... .+..+++....... .+. ..+-..+...+....+=.|.+
T Consensus 118 eknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINL 197 (460)
T COG5170 118 EKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINL 197 (460)
T ss_pred cccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeee
Confidence 4422111100000000 01111211111000 000 000001222333334445555
Q ss_pred EEccccccccccccceEEEEEccCCC------ceEEEEEcCCC-CEEEEecCCCeEEEEECCCce------eeeeecCCC
Q 020454 138 RSIEVTKVSAESSCSTVKSWNVCASG------TIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCE------KIWTAKPPP 204 (326)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~------~~~~~~~~~ 204 (326)
|.++.. ++...+.++++.. -|++..|||.. +.+.-.+..|.|++-|++... .++.....+
T Consensus 198 Wnl~i~-------D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~ 270 (460)
T COG5170 198 WNLEII-------DGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDG 270 (460)
T ss_pred cccccc-------CCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCc
Confidence 554332 2334444443221 27888999975 666677888999999998432 122211111
Q ss_pred CCCCCc-CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC------------ce---EEEEecC
Q 020454 205 KNSLGI-FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET------------PI---KAVAEEP 268 (326)
Q Consensus 205 ~~~~~~-~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------------~i---~~v~~s~ 268 (326)
.+...+ .....|+.+.|++ +|+++++-. --+|+|||.+..+.|+.++..|.. .| ..+.|+.
T Consensus 271 v~~~ff~eivsSISD~kFs~--ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg 347 (460)
T COG5170 271 VDVDFFEEIVSSISDFKFSD--NGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG 347 (460)
T ss_pred ccchhHHHHhhhhcceEEcC--CCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecC
Confidence 111000 0123678889997 565665544 578999999988888888865432 22 3567888
Q ss_pred CCCeEEEEcCCCcEEEEECC
Q 020454 269 DSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 269 ~~~~l~~g~~dg~v~iwd~~ 288 (326)
|...+++|+..+..-+|-..
T Consensus 348 d~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 348 DDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred Ccccccccccccceeeeccc
Confidence 89999999998888887643
No 270
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=4.4e-07 Score=79.19 Aligned_cols=142 Identities=13% Similarity=0.113 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCEEEE-ecCCCe--EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CCC--e
Q 020454 165 IAFSKVDISEKFSLF-GGKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDH--Q 238 (326)
Q Consensus 165 v~~~~~~~~~~~l~s-g~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~dg--~ 238 (326)
.....|+|+++.|+. ...++. |.++|+.+++... +..+. .......|+| +++.++..+ .++ .
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~---------~~~~~p~wSp--DG~~I~f~s~~~g~~~ 331 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHR---------AIDTEPSWHP--DGKSLIFTSERGGKPQ 331 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCC---------CCccceEECC--CCCEEEEEECCCCCce
Confidence 346789999987764 455664 7778887765432 22211 1234668888 455555443 344 5
Q ss_pred EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-CC--cEEEEECCCCeEEEEEcceecceEEEEEECCCCCE
Q 020454 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI 315 (326)
Q Consensus 239 v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 315 (326)
|.++|+.++ + ...+..........+|+|||++|+..+. ++ .|.++|+.+++... +... .......|+|+++.
T Consensus 332 Iy~~dl~~g-~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~--~~d~~ps~spdG~~ 406 (448)
T PRK04792 332 IYRVNLASG-K-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST--RLDESPSVAPNGTM 406 (448)
T ss_pred EEEEECCCC-C-EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC--CCCCCceECCCCCE
Confidence 666677755 2 3333333333445689999999885544 44 45667888776532 2211 12234579999998
Q ss_pred EEEeccCc
Q 020454 316 IASCGFLE 323 (326)
Q Consensus 316 l~s~s~D~ 323 (326)
|+..+.++
T Consensus 407 I~~~~~~~ 414 (448)
T PRK04792 407 VIYSTTYQ 414 (448)
T ss_pred EEEEEecC
Confidence 77665543
No 271
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.97 E-value=1.3e-07 Score=82.28 Aligned_cols=146 Identities=16% Similarity=0.100 Sum_probs=97.9
Q ss_pred CCceEEEEEcCCCCEEEEecCC---CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCC
Q 020454 162 SGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDH 237 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg 237 (326)
...+...+|+|++++|+....+ ..|.+||+.+++...... .. ..+.+++|+| +++.|+ +.+.++
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~---------~~~~~~~~sp--Dg~~l~~~~~~~~ 256 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FP---------GMNGAPAFSP--DGSKLAVSLSKDG 256 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CC---------CCccceEECC--CCCEEEEEECCCC
Confidence 4468888999999998876543 479999998875433211 11 2244578888 454554 455444
Q ss_pred --eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-CC--cEEEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454 238 --QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 238 --~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~ 312 (326)
.|++||+.++ . ...+..+........|+|+|++|+..+. ++ .|+++|+.+++.. .+..+ ...+....|+|+
T Consensus 257 ~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~-~~~~~~~~~spd 332 (417)
T TIGR02800 257 NPDIYVMDLDGK-Q-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR-GGYNASPSWSPD 332 (417)
T ss_pred CccEEEEECCCC-C-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-CCCccCeEECCC
Confidence 5888898865 2 3444444444556789999998875543 33 5888888877643 33333 456778899999
Q ss_pred CCEEEEeccCc
Q 020454 313 LPIIASCGFLE 323 (326)
Q Consensus 313 ~~~l~s~s~D~ 323 (326)
+++|+.++.++
T Consensus 333 g~~i~~~~~~~ 343 (417)
T TIGR02800 333 GDLIAFVHREG 343 (417)
T ss_pred CCEEEEEEccC
Confidence 99998887654
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1e-07 Score=82.83 Aligned_cols=269 Identities=12% Similarity=0.105 Sum_probs=171.1
Q ss_pred eeeeeecCcccEEEEEecCCcC-----CC---cceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHG-----GV---PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD 86 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~ 86 (326)
.-+++|+.+|.+||..+.+... |. ..+...-.-..+...+..+.|.+. ...|-++..+|.|.+|-+-+|.
T Consensus 27 gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~--~QKLTtSDt~GlIiVWmlykgs 104 (1189)
T KOG2041|consen 27 GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN--NQKLTTSDTSGLIIVWMLYKGS 104 (1189)
T ss_pred CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc--cccccccCCCceEEEEeeeccc
Confidence 4588999999999999876521 10 001111111344445555555443 3358889999999999998887
Q ss_pred eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccC-CCce
Q 020454 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTI 165 (326)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 165 (326)
...+.... .....|.++.|.. ++..+....+||.|.+-+++.+ ++|.-.- ....
T Consensus 105 W~EEMiNn------RnKSvV~SmsWn~--------dG~kIcIvYeDGavIVGsvdGN-----------RIwgKeLkg~~l 159 (1189)
T KOG2041|consen 105 WCEEMINN------RNKSVVVSMSWNL--------DGTKICIVYEDGAVIVGSVDGN-----------RIWGKELKGQLL 159 (1189)
T ss_pred HHHHHhhC------cCccEEEEEEEcC--------CCcEEEEEEccCCEEEEeeccc-----------eecchhcchhec
Confidence 76665541 3445677777644 6678888899998877665432 3443221 2345
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCce-------eeeeecCCCCCCCCcCCCCceeeeEEeec------CCCcEEEE
Q 020454 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCE-------KIWTAKPPPKNSLGIFTPTWFTSAAFLSI------DDHRKFVA 232 (326)
Q Consensus 166 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~------~~~~~l~~ 232 (326)
..+.|+++.+.++.+-.+|.+++||.+..- +.....+... ..+..+..+.|... ++...|++
T Consensus 160 ~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s-----~~~~kia~i~w~~g~~~~v~pdrP~lav 234 (1189)
T KOG2041|consen 160 AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFS-----NFPTKIAEIEWNTGPYQPVPPDRPRLAV 234 (1189)
T ss_pred cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeec-----CCCccccceeeccCccccCCCCCCEEEE
Confidence 578899999888888889999999976421 1111111000 01122334444211 14448999
Q ss_pred EeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC---------cEEEEECCCCeEEEEEcceecce
Q 020454 233 GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---------DLASVDIRTGKLLGCFIGKCSGS 303 (326)
Q Consensus 233 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg---------~v~iwd~~~~~~~~~~~~~~~~~ 303 (326)
+-.+|.+.|..-.+...|+. +... ..+....|+++|..|++++.+. .|.+|.. -|+.+.+++.. ...
T Consensus 235 cy~nGr~QiMR~eND~~Pvv-~dtg-m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvp-g~~ 310 (1189)
T KOG2041|consen 235 CYANGRMQIMRSENDPEPVV-VDTG-MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVP-GSC 310 (1189)
T ss_pred EEcCceehhhhhcCCCCCeE-Eecc-cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecC-Cce
Confidence 99999999887665544543 2222 6788899999999999776542 4555543 47778888876 778
Q ss_pred EEEEEECCCCCEEEEe
Q 020454 304 IRSIARHPTLPIIASC 319 (326)
Q Consensus 304 v~~l~~~p~~~~l~s~ 319 (326)
|+++.|--.+-.+|-+
T Consensus 311 It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIA 326 (1189)
T ss_pred eeeeEEcCCceEEEEE
Confidence 9999997666555443
No 273
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=1.1e-06 Score=76.83 Aligned_cols=211 Identities=12% Similarity=0.027 Sum_probs=116.0
Q ss_pred EeeeCCCCCeEEEEecC---CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCC
Q 020454 58 SIDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKG 133 (326)
Q Consensus 58 ~~~~~~~~~~l~~g~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g 133 (326)
...++++++.|+..+.+ ..|.+|++.+++....... .+......+.+ ++..++ +...+|
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---------~g~~~~~~~Sp--------DG~~la~~~~~~g 265 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---------EGLNGAPAWSP--------DGSKLAFVLSKDG 265 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---------CCCcCCeEECC--------CCCEEEEEEccCC
Confidence 33455666677665533 3688899987765332111 12222344433 445554 455555
Q ss_pred --cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC-CC--eEEEEECCCceeeeeecCCCCCCC
Q 020454 134 --KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GV--EVNVWDLDKCEKIWTAKPPPKNSL 208 (326)
Q Consensus 134 --~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~ 208 (326)
.|++++++... ..++.. .........|+|+++.|+..+. ++ .|.++|+.+++........
T Consensus 266 ~~~Iy~~d~~~~~--------~~~lt~--~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~----- 330 (430)
T PRK00178 266 NPEIYVMDLASRQ--------LSRVTN--HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG----- 330 (430)
T ss_pred CceEEEEECCCCC--------eEEccc--CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-----
Confidence 46666654322 111111 1223456789999987765443 33 5777787766543221110
Q ss_pred CcCCCCceeeeEEeecCCCcEEEEEeC-CC--eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC-C--cE
Q 020454 209 GIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DL 282 (326)
Q Consensus 209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d-g--~v 282 (326)
.......|+| +++.++..+. ++ .|.+||+.++. ...+... .......|+|+|+.++..+.+ | .+
T Consensus 331 -----~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~--~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 331 -----NYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGS--VRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred -----CCccceEECC--CCCEEEEEEccCCceEEEEEECCCCC--EEEccCC-CCCCCceECCCCCEEEEEEecCCceEE
Confidence 1122457887 4556665553 33 58889988652 2333221 222345899999998855543 3 47
Q ss_pred EEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~ 312 (326)
.++++. +.....+..+ .+.+...+|+|-
T Consensus 401 ~~~~~~-g~~~~~l~~~-~g~~~~p~ws~~ 428 (430)
T PRK00178 401 MLVSIN-GRVRLPLPTA-QGEVREPSWSPY 428 (430)
T ss_pred EEEECC-CCceEECcCC-CCCcCCCccCCC
Confidence 777775 4444455554 667788888874
No 274
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=8.6e-07 Score=76.82 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=86.9
Q ss_pred CceEEEEEcCCCCEEEEecC-----CCeEEEEECCCc---eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe
Q 020454 163 GTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDKC---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~-----d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~ 234 (326)
+.....+|+|||+.|+..+. +-.+.+|++..+ +......... ......+|+| +|+.|+..+
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~---------~~~~~p~wSP--DG~~Laf~s 299 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF---------GTQGNPSFSP--DGTRLVFVS 299 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC---------CCcCCeEECC--CCCEEEEEE
Confidence 34456789999987775442 223445776642 2111111110 1234568988 566666554
Q ss_pred -CCCeEEEE--eCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-C--CcEEEEECCCCeEEEEEcceecceEEEEE
Q 020454 235 -NDHQVRLY--DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S--GDLASVDIRTGKLLGCFIGKCSGSIRSIA 308 (326)
Q Consensus 235 -~dg~v~iw--d~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-d--g~v~iwd~~~~~~~~~~~~~~~~~v~~l~ 308 (326)
.+|...+| ++.........+......+....|+|||++|+..+. + ..|.+||+.+++... +... ...+....
T Consensus 300 ~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~-~~~~~~p~ 377 (428)
T PRK01029 300 NKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTS-PENKESPS 377 (428)
T ss_pred CCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCC-CCCccceE
Confidence 46655555 443221223444444456778899999998885543 3 369999999887643 3322 34577899
Q ss_pred ECCCCCEEEEec
Q 020454 309 RHPTLPIIASCG 320 (326)
Q Consensus 309 ~~p~~~~l~s~s 320 (326)
|+|+++.|+..+
T Consensus 378 wSpDG~~L~f~~ 389 (428)
T PRK01029 378 WAIDSLHLVYSA 389 (428)
T ss_pred ECCCCCEEEEEE
Confidence 999998776543
No 275
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=3.1e-07 Score=77.52 Aligned_cols=254 Identities=12% Similarity=0.070 Sum_probs=131.5
Q ss_pred ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCC
Q 020454 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPED 103 (326)
Q Consensus 24 G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 103 (326)
..+.|||+.+| .+...|.-... ....+--+-|+.+++++|.-.. .+|.||+...-.++.. +. ..-
T Consensus 282 ~~l~IWDI~tG-----~lkrsF~~~~~-~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~-Ks-------lki 346 (698)
T KOG2314|consen 282 QQLIIWDIATG-----LLKRSFPVIKS-PYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK-KS-------LKI 346 (698)
T ss_pred ceEEEEEcccc-----chhcceeccCC-CccccceEEeccCCceeEEecc-ceEEEEecCceeeecc-cc-------cCC
Confidence 47899999988 44444443212 1222333456667777776555 6799999764332211 11 111
Q ss_pred CCeeeeecccccccccCCCCceEEEEecCC-----cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE
Q 020454 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKG-----KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL 178 (326)
Q Consensus 104 ~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g-----~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 178 (326)
..|....+.+ .+..|+-++..- .+.+..+.... .-.+..++++. =..|-|..+|.+|+
T Consensus 347 ~gIr~FswsP--------~~~llAYwtpe~~~~parvtL~evPs~~-----~iRt~nlfnVs----DckLhWQk~gdyLc 409 (698)
T KOG2314|consen 347 SGIRDFSWSP--------TSNLLAYWTPETNNIPARVTLMEVPSKR-----EIRTKNLFNVS----DCKLHWQKSGDYLC 409 (698)
T ss_pred ccccCcccCC--------CcceEEEEcccccCCcceEEEEecCccc-----eeeeccceeee----ccEEEeccCCcEEE
Confidence 3455555543 223333332211 11111111110 01111111111 01234445556554
Q ss_pred E----------ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC---CCeEEEEeCC
Q 020454 179 F----------GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---DHQVRLYDTS 245 (326)
Q Consensus 179 s----------g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~---dg~v~iwd~~ 245 (326)
. .+.-..+.|+.++....... . +.....|-..+|-|. |+.+++-+. ..++.+|.+.
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve-------~--velke~vi~FaWEP~--gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVE-------V--VELKESVIAFAWEPH--GDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCce-------e--eecchheeeeeeccC--CCeEEEEEccccccceeEEEee
Confidence 3 22223455665554322111 1 111234667788885 445655443 3478889877
Q ss_pred -CCCCceeEEeecCCceEEEEecCCCCeEEEE---cCCCcEEEEECCCCeEEEE-EcceecceEEEEEECCCCCEEEEec
Q 020454 246 -AQRRPVMSFDFRETPIKAVAEEPDSFNIYIG---NGSGDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 246 -~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g---~~dg~v~iwd~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
+..++...........+.+.|+|.|++++++ +..|.+.++|..-..+... ...| -..+.+.|.|.|+|++|++
T Consensus 479 ~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh--~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 479 TNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH--FAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred cCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc--cccccceECCCCCEEEEee
Confidence 3323322333344667889999999999855 4578899999874222211 1222 3467889999999999998
Q ss_pred cC
Q 020454 321 FL 322 (326)
Q Consensus 321 ~D 322 (326)
.-
T Consensus 557 s~ 558 (698)
T KOG2314|consen 557 SS 558 (698)
T ss_pred eh
Confidence 54
No 276
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=2.7e-06 Score=73.82 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCEEEEec-CCCeEEEE--ECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC---C
Q 020454 165 IAFSKVDISEKFSLFGG-KGVEVNVW--DLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---H 237 (326)
Q Consensus 165 v~~~~~~~~~~~l~sg~-~d~~i~iw--d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d---g 237 (326)
.....|+|+|+.|+..+ .++...|| ++.. +.....+.... ..+....|+| +++.|+..+.+ .
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~---------~~~~~p~wSP--DG~~Laf~~~~~g~~ 351 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY---------RNSSCPAWSP--DGKKIAFCSVIKGVR 351 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC---------CCccceeECC--CCCEEEEEEcCCCCc
Confidence 45678999998776554 46655555 4432 11122221111 2345678988 56677765443 4
Q ss_pred eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEE-EcC--CCcEEEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI-GNG--SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 238 ~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~-g~~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~ 312 (326)
.|.+||+.++ + ...+......+....|+|||+.|+. +.. ...|+++|+.+++...... . .+.+...+|+|-
T Consensus 352 ~I~v~dl~~g-~-~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~-~g~~~~p~Ws~~ 425 (428)
T PRK01029 352 QICVYDLATG-R-DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-G-SGEKRFPSWGAF 425 (428)
T ss_pred EEEEEECCCC-C-eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-C-CCcccCceecCC
Confidence 7999999876 3 3444433445677899999998874 333 3468889998776544443 3 556778888874
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.93 E-value=3.6e-06 Score=80.57 Aligned_cols=251 Identities=10% Similarity=0.006 Sum_probs=138.4
Q ss_pred CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCC------CCCCCeeeeecccccccccCCCCceEEEE-ecCCcEE
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ------PEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKAS 136 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~ 136 (326)
.+.++++-+.++.|++||.. ++.+..+......... ..-....++++.+ +++.|+++ ..++.|+
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~--------~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA--------KKNLLYVADTENHALR 649 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC--------CCCEEEEEeCCCceEE
Confidence 34466777788999999984 5544443321110000 0011234455432 33444444 4556777
Q ss_pred EEEccccccccccccceE-EEEEc------cCCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCceeeeee-cCCCCC-
Q 020454 137 MRSIEVTKVSAESSCSTV-KSWNV------CASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTA-KPPPKN- 206 (326)
Q Consensus 137 i~~~~~~~~~~~~~~~~~-~~~~~------~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~~~~~- 206 (326)
.+++......+-...+.. ..+.- ..-..-..++++| ++.++++...++.|++||..++...... .+....
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL 729 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence 777644221000000000 00000 0011235789999 4566677778899999999876543211 110000
Q ss_pred ---CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee------------EEeec--------CCceEE
Q 020454 207 ---SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM------------SFDFR--------ETPIKA 263 (326)
Q Consensus 207 ---~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~------------~~~~~--------~~~i~~ 263 (326)
...........+++++|. .+.++++-+.++.|++||+.++...+. .+-.. -.....
T Consensus 730 ~g~~~~~~~~~~P~GIavspd-G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPD-LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCccccccccCccEEEEeCC-CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 000001134567899884 233666777789999999886521110 00000 012357
Q ss_pred EEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-------------ceecceEEEEEECCCCCEEEEeccCccC
Q 020454 264 VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-------------GKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 264 v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-------------~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
++++++|+.+++-..++.|++||..++....... +. -.....|+++++++++++-+.++.+
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~-l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ-LSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc-cCCceEEEEeCCCCEEEEECCCCEE
Confidence 8999999988888889999999998876653221 11 1246789999999988887776654
No 278
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=3.9e-09 Score=83.59 Aligned_cols=142 Identities=17% Similarity=0.149 Sum_probs=102.3
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i 241 (326)
...|.++.|+..++++..|..+|.|..+|++... ++.......+.|+..|+++..... +.+.|++.+.+|+|++
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn-----qG~~~~a~rlyh~Ssvtslq~Lq~-s~q~LmaS~M~gkikL 325 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN-----QGNGWCAQRLYHDSSVTSLQILQF-SQQKLMASDMTGKIKL 325 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecc-----cCCCcceEEEEcCcchhhhhhhcc-ccceEeeccCcCceeE
Confidence 4568889999889999999999999999998651 111111122456677888776643 3458999999999999
Q ss_pred EeCCCCCCc---eeEEeecCCceEEE--EecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce---ecceEEEEEEC
Q 020454 242 YDTSAQRRP---VMSFDFRETPIKAV--AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARH 310 (326)
Q Consensus 242 wd~~~~~~~---~~~~~~~~~~i~~v--~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~~ 310 (326)
||+|.- +. +.++++|-..-.-+ -..+....|++++.|...+||.++.|.++.+++-. .+..+.+++|.
T Consensus 326 yD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 326 YDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeehhh-hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 999965 34 67777774422222 33456778889999999999999999998877632 02345666665
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.89 E-value=7.7e-06 Score=78.40 Aligned_cols=162 Identities=11% Similarity=0.087 Sum_probs=99.0
Q ss_pred ceEEEEecCCcEEEEEccccccccccccceEEEEE-----ccCCCceEEEEEcCCCC-EEEEecCCCeEEEEECCCceee
Q 020454 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-----VCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKI 197 (326)
Q Consensus 124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~ 197 (326)
..+++...++.|++|+...........++.....+ ...-.....++++|+++ ++++-..++.|++||+.++...
T Consensus 696 ~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~ 775 (1057)
T PLN02919 696 KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR 775 (1057)
T ss_pred eEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence 35566677888898886543211000011000000 00112456799999987 4455566789999999876532
Q ss_pred eeecCCC---C------------CCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee------
Q 020454 198 WTAKPPP---K------------NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF------ 256 (326)
Q Consensus 198 ~~~~~~~---~------------~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------ 256 (326)
....+.. . ....+ ....++++.+ +++++++-+.+++|++||..++ . +..+.+
T Consensus 776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l---~~P~Gvavd~--dG~LYVADs~N~rIrviD~~tg-~-v~tiaG~G~~G~ 848 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDHDGVGSEVLL---QHPLGVLCAK--DGQIYVADSYNHKIKKLDPATK-R-VTTLAGTGKAGF 848 (1057)
T ss_pred EEEecccccCcccccccCCCCchhhhhc---cCCceeeEeC--CCcEEEEECCCCEEEEEECCCC-e-EEEEeccCCcCC
Confidence 2111100 0 00011 1234778876 5668888899999999999865 2 223221
Q ss_pred --------cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454 257 --------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 257 --------~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~ 292 (326)
.-.....++++++|+.+++-+.++.|++||+++++.
T Consensus 849 ~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 849 KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 112467899999999888888899999999998764
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.88 E-value=1.3e-07 Score=76.54 Aligned_cols=162 Identities=11% Similarity=0.143 Sum_probs=98.1
Q ss_pred eCCCCCeEEEEecCCcEEEEeccccce-eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454 61 DSQNDPLLAVARKNGLTDILNPLNGDL-RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (326)
Q Consensus 61 ~~~~~~~l~~g~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~ 139 (326)
.+.++.++|++..+....+++...... .+.......+ .....+.+.. .+...+.+-..|.++-++
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~------~~~~ai~~~~--------~~~sv~v~dkagD~~~~d 135 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP------KRPTAISFIR--------EDTSVLVADKAGDVYSFD 135 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc------cCcceeeeee--------ccceEEEEeecCCceeee
Confidence 355667888888888877777653332 1222211111 1112222222 345566666566555444
Q ss_pred ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454 140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (326)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (326)
+-.... +.. .-.+.|-..++.++++||+++|+++..|..|++-.....-.+.. +.+.|...|..+
T Consensus 136 i~s~~~------~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies--------fclGH~eFVS~i 200 (390)
T KOG3914|consen 136 ILSADS------GRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES--------FCLGHKEFVSTI 200 (390)
T ss_pred eecccc------cCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh--------hccccHhheeee
Confidence 332110 000 00123345688999999999999999999999977653332222 334455778898
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe
Q 020454 220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD 255 (326)
Q Consensus 220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 255 (326)
+.-+ ++.|++++.|+++++||+++++. +.++.
T Consensus 201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~-L~t~d 232 (390)
T KOG3914|consen 201 SLTD---NYLLLSGSGDKTLRLWDITSGKL-LDTCD 232 (390)
T ss_pred eecc---CceeeecCCCCcEEEEecccCCc-ccccc
Confidence 8875 34799999999999999998843 45544
No 281
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=9.7e-08 Score=82.96 Aligned_cols=239 Identities=13% Similarity=0.073 Sum_probs=150.0
Q ss_pred EEeeeCCCCCeEEEEecCCcEEEEeccccceeee---e---ccc-CCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454 57 ASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA---I---SNA-GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (326)
Q Consensus 57 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~---~---~~~-~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~ 129 (326)
-|..|..+..++++|+.||.+++..+.+..--.. + ..+ .+-...+|.+.|.-..|-. ...++-+.
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe--------~~QKLTtS 89 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE--------NNQKLTTS 89 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc--------cccccccc
Confidence 3445667777999999999999998764321000 0 000 1111236667777565433 33567777
Q ss_pred ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeee-eecCCCCCCC
Q 020454 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNSL 208 (326)
Q Consensus 130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~~~~~~~~~ 208 (326)
..+|.|.+|-+-.... -.. ..+-+...-|.+|+|+.+|..++....||.|.+=.+...+.-- .+++.
T Consensus 90 Dt~GlIiVWmlykgsW-----~EE--MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~----- 157 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSW-----CEE--MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ----- 157 (1189)
T ss_pred CCCceEEEEeeecccH-----HHH--HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh-----
Confidence 7888888887543221 100 0122335578999999999999999999999887765443311 12221
Q ss_pred CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC------CceeEE----eecCCceEEEEec--------CCC
Q 020454 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSF----DFRETPIKAVAEE--------PDS 270 (326)
Q Consensus 209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~----~~~~~~i~~v~~s--------~~~ 270 (326)
-.+.+.|++ |.+.++.+-.+|.+.+||....- .+.... ......|..+.|. |+.
T Consensus 158 ------~l~hv~ws~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 158 ------LLAHVLWSE--DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred ------eccceeecc--cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 134667887 44567777778999999965321 111111 1112235556664 577
Q ss_pred CeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 271 FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 271 ~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..++++-.+|.+.|-.-.+......+.. .-.|....|+++|.+||.||.|..+
T Consensus 230 P~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da 282 (1189)
T KOG2041|consen 230 PRLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDA 282 (1189)
T ss_pred CEEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccc
Confidence 8899999999998876554433333331 3478899999999999999988654
No 282
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.85 E-value=1.8e-08 Score=76.83 Aligned_cols=144 Identities=12% Similarity=0.083 Sum_probs=87.4
Q ss_pred CCCEEEEecCCCeEEEEECCCceeeeeecCC-CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce
Q 020454 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP-PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (326)
Q Consensus 173 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 251 (326)
.++-+++++.|+.+.+++.+.- +.++.. ............+....+... + .+.+-..-+..+.|+++..+...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~---~~~~~~i~~~~~~~as~~~~~~~~~i~s--~-~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKD---LALMSRIPSIHSGSASRKICRHGNSILS--G-GCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred cCCceEecCCCceEEEEechHH---HhhhhhcccccccccccceeecccEEec--C-CcceEeeccceeeeccccccccc
Confidence 4677899999999999998752 211110 000000101111111112111 0 11112223445667766543322
Q ss_pred eEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeEE-EEEcceecceEEEEEECC-CCCEEEEeccCcc
Q 020454 252 MSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLL-GCFIGKCSGSIRSIARHP-TLPIIASCGFLEA 324 (326)
Q Consensus 252 ~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~v~~l~~~p-~~~~l~s~s~D~~ 324 (326)
...+.. ..|++++-+|.. +.+++|+.||.+.+||.+..... ..+..| +.+|+.+.||| +...|++++.||.
T Consensus 174 ~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-k~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 174 PSKKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-KAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred cccccc-ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-hhhhhheeccCCCchheeEecCCCc
Confidence 222233 349999999975 45669999999999999987544 345677 99999999999 5568999999996
No 283
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.80 E-value=4.1e-05 Score=61.80 Aligned_cols=268 Identities=12% Similarity=0.130 Sum_probs=147.9
Q ss_pred CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEeccc-cceeeeecccCCCCC
Q 020454 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLN-GDLRVAISNAGDSGA 99 (326)
Q Consensus 22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~-~~~~~~~~~~~~~~~ 99 (326)
++|-|-.+.++.. .|...+.-+...+..+-+.++ . +.++++|+++. ..|.|.++.+.+ |.+............
T Consensus 62 ~~ggvaay~iD~~-~G~Lt~ln~~~~~g~~p~yvs--v--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~ 136 (346)
T COG2706 62 EEGGVAAYRIDPD-DGRLTFLNRQTLPGSPPCYVS--V--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS 136 (346)
T ss_pred CcCcEEEEEEcCC-CCeEEEeeccccCCCCCeEEE--E--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC
Confidence 4677777777753 344434333333333334332 2 33455666664 459999999854 555444333322211
Q ss_pred CCCC---CCeeeeecccccccccCCCCceEEEEec-CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC
Q 020454 100 QPED---DGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (326)
Q Consensus 100 ~~~~---~~i~~l~~~~~~~~~~~~~~~~l~~~~~-~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (326)
..+. .+-...+.+. ++..+++++.- -..|.+|+++.... . ......++.+..-+-|.|||+++
T Consensus 137 ~p~~rQ~~~h~H~a~~t-------P~~~~l~v~DLG~Dri~~y~~~dg~L-~-----~~~~~~v~~G~GPRHi~FHpn~k 203 (346)
T COG2706 137 GPHERQESPHVHSANFT-------PDGRYLVVPDLGTDRIFLYDLDDGKL-T-----PADPAEVKPGAGPRHIVFHPNGK 203 (346)
T ss_pred CCCccccCCccceeeeC-------CCCCEEEEeecCCceEEEEEcccCcc-c-----cccccccCCCCCcceEEEcCCCc
Confidence 1111 1111222222 13445555543 35678888773221 1 12222335567788999999999
Q ss_pred EEEEec-CCCeEEEEECCCc-eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-CCeEEEEeCCCCCCcee
Q 020454 176 FSLFGG-KGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVM 252 (326)
Q Consensus 176 ~l~sg~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~ 252 (326)
+..... .+++|.+|..... ..+..++.+..-...+.-..|..++..+| +|++|.++.+ ...|-+|.+......+.
T Consensus 204 ~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~--dGrFLYasNRg~dsI~~f~V~~~~g~L~ 281 (346)
T COG2706 204 YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP--DGRFLYASNRGHDSIAVFSVDPDGGKLE 281 (346)
T ss_pred EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC--CCCEEEEecCCCCeEEEEEEcCCCCEEE
Confidence 876544 6889999999874 33444444333333344456777888887 6767776643 34777777664322222
Q ss_pred E---EeecCCceEEEEecCCCCeEEEEcCC-CcEEEEECC--CCeEEEEEcceecceEEEEEE
Q 020454 253 S---FDFRETPIKAVAEEPDSFNIYIGNGS-GDLASVDIR--TGKLLGCFIGKCSGSIRSIAR 309 (326)
Q Consensus 253 ~---~~~~~~~i~~v~~s~~~~~l~~g~~d-g~v~iwd~~--~~~~~~~~~~~~~~~v~~l~~ 309 (326)
. ...+...-+...|++.|++|+++.++ ..|.+|... +|++-............||.|
T Consensus 282 ~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 282 LVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred EEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEE
Confidence 2 22233346788999999999988775 468888665 565543222111334445555
No 284
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.80 E-value=2.1e-08 Score=55.13 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=35.3
Q ss_pred ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (326)
Q Consensus 250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd 286 (326)
++.++..|...|++++|+|++++|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5788999999999999999999999999999999997
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.79 E-value=2.4e-07 Score=75.05 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=66.1
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~ 290 (326)
|-..++.++++| |+++++++..|..|++-..... ..+.+|- +|..-|..++.-++ ..|++|+.|+++++||+++|
T Consensus 150 hvSml~dVavS~--D~~~IitaDRDEkIRvs~ypa~-f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 150 HVSMLLDVAVSP--DDQFIITADRDEKIRVSRYPAT-FVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhhhheeeecC--CCCEEEEecCCceEEEEecCcc-cchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccC
Confidence 445688999998 4569999999999999886643 3355554 58899999998654 46899999999999999999
Q ss_pred eEEEEEc
Q 020454 291 KLLGCFI 297 (326)
Q Consensus 291 ~~~~~~~ 297 (326)
+.+..+.
T Consensus 226 k~L~t~d 232 (390)
T KOG3914|consen 226 KLLDTCD 232 (390)
T ss_pred Ccccccc
Confidence 9886654
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=2e-07 Score=78.79 Aligned_cols=272 Identities=10% Similarity=0.067 Sum_probs=158.6
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..+++++.|.+||+|.++.+-.+...-..+|.-..+...+..+.+..+- -.+++.||-|.+||.--+..+..+...
T Consensus 748 NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l----r~i~ScD~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 748 NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL----RSIASCDGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc----ceeeeccCcceeecccccchhHhhhcC
Confidence 5688999999999999987623333222344444455555555555442 266788999999999877766544321
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEE-EecCCcEEEEEccccccccccccceEEEEEccC----CCceEEEE
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIAFSK 169 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~-~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~ 169 (326)
+.....+.|.++.-.. ...+++ |+...+++++|-+..+ -...|++.. ..-+.+++
T Consensus 824 ---pk~~a~~~ikcl~nv~---------~~iliAgcsaeSTVKl~DaRsce--------~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 824 ---PKEGAGGNIKCLENVD---------RHILIAGCSAESTVKLFDARSCE--------WTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred ---cccCCCceeEecccCc---------chheeeeccchhhheeeeccccc--------ceeeEEeccCCCCchheeEEE
Confidence 1123334555554322 223444 4788899999855433 344444432 24588999
Q ss_pred EcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE-EeCCCCC
Q 020454 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL-YDTSAQR 248 (326)
Q Consensus 170 ~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i-wd~~~~~ 248 (326)
+.+.|+.++.+-.+|.|.+.|.++++.+.......-+.+++.. | ..+.++....|..+.+ |....+
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa----------p--sdq~L~~saldHslaVnWhaldg- 950 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA----------P--SDQALAQSALDHSLAVNWHALDG- 950 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC----------c--hhHHHHhhcccceeEeeehhcCC-
Confidence 9999999999999999999999999987766655444433311 2 1225666666777777 654433
Q ss_pred CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC----CeEEEEEcc-eecceEEEEEECCCCCEEEEeccCc
Q 020454 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----GKLLGCFIG-KCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 249 ~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~----~~~~~~~~~-~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
....+.+....+..-+ -.-|.-+++......+.+|.-.. ...+.+++. ...+..++++.-|-+.-+..|..-|
T Consensus 951 imh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G 1028 (1034)
T KOG4190|consen 951 IMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHG 1028 (1034)
T ss_pred eeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCC
Confidence 1112221111111111 11255566665556666664221 011112221 1255677888888665555666665
Q ss_pred cC
Q 020454 324 AA 325 (326)
Q Consensus 324 ~~ 325 (326)
++
T Consensus 1029 ~I 1030 (1034)
T KOG4190|consen 1029 AI 1030 (1034)
T ss_pred ce
Confidence 53
No 287
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.76 E-value=3.4e-07 Score=81.63 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=67.3
Q ss_pred CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc---eeEEeecCC
Q 020454 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFDFRET 259 (326)
Q Consensus 183 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~ 259 (326)
|..|++||++..+.+.-+.-+... .-+.|+|.- ...+++++..|...+-|..+...| +..+.....
T Consensus 245 D~FvkVYDLRmmral~PI~~~~~P----------~flrf~Psl-~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s 313 (1118)
T KOG1275|consen 245 DPFVKVYDLRMMRALSPIQFPYGP----------QFLRFHPSL-TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS 313 (1118)
T ss_pred cchhhhhhhhhhhccCCcccccCc----------hhhhhcccc-cceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence 556899999977765544333211 234677763 347899999999999994433222 333434455
Q ss_pred ceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454 260 PIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (326)
Q Consensus 260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~ 287 (326)
.+..+.++++++.++.|..+|.|.+|.-
T Consensus 314 ~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 314 GISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cceeEEecCCCceEEEecccCcEeeecC
Confidence 6999999999999999999999999973
No 288
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=7e-07 Score=77.97 Aligned_cols=144 Identities=13% Similarity=0.099 Sum_probs=93.2
Q ss_pred CCceEEEEEcCCCCEEEEecCC---CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCC
Q 020454 162 SGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDH 237 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg 237 (326)
...+....|+|+|+.|+..+.+ ..|.+||+.+++..... ... .......|+| +++.|+ +.+.++
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt-~~~---------g~~~~~~wSP--DG~~La~~~~~~g 284 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT-SFP---------GINGAPRFSP--DGKKLALVLSKDG 284 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec-CCC---------CCcCCeeECC--CCCEEEEEEeCCC
Confidence 4578889999999888765432 35889999877643221 111 1123568888 455555 456666
Q ss_pred e--EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCC--cEEEEECCCCeEEEE-EcceecceEEEEEECC
Q 020454 238 Q--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSG--DLASVDIRTGKLLGC-FIGKCSGSIRSIARHP 311 (326)
Q Consensus 238 ~--v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg--~v~iwd~~~~~~~~~-~~~~~~~~v~~l~~~p 311 (326)
. |+++|+.++ + ...+..+.......+|+|||++|+..+ .++ .|+++|+.+++.... +.++ .....+|+|
T Consensus 285 ~~~Iy~~dl~tg-~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~---~~~~~~~Sp 359 (448)
T PRK04792 285 QPEIYVVDIATK-A-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE---QNLGGSITP 359 (448)
T ss_pred CeEEEEEECCCC-C-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC---CCcCeeECC
Confidence 4 777788765 3 445545555567789999999887544 344 477778877765432 2322 334578999
Q ss_pred CCCEEEEeccC
Q 020454 312 TLPIIASCGFL 322 (326)
Q Consensus 312 ~~~~l~s~s~D 322 (326)
++++|+..+.+
T Consensus 360 DG~~l~~~~~~ 370 (448)
T PRK04792 360 DGRSMIMVNRT 370 (448)
T ss_pred CCCEEEEEEec
Confidence 99988876654
No 289
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=1.3e-07 Score=75.25 Aligned_cols=166 Identities=8% Similarity=0.096 Sum_probs=108.2
Q ss_pred EEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccc
Q 020454 69 AVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE 148 (326)
Q Consensus 69 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~ 148 (326)
++.+.+-.|-+-|+++|.. ..+.. ...|.++.+.. .++.++.|..+|.|..+|++.... +
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~s---------ksDVfAlQf~~--------s~nLv~~GcRngeI~~iDLR~rnq--G 287 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQS---------KSDVFALQFAG--------SDNLVFNGCRNGEIFVIDLRCRNQ--G 287 (425)
T ss_pred ecccccceeEEEEeecccc-ccccc---------chhHHHHHhcc--------cCCeeEecccCCcEEEEEeeeccc--C
Confidence 3344455677777766654 22222 14566666544 567999999999999999987642 2
Q ss_pred cccceEEEEEccCCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCcee---eeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454 149 SSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (326)
Q Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 224 (326)
......+++ ++..|+++..-. ++.+|++.+.+|+|++||++--+. +.+..+|.....-+ -++-+
T Consensus 288 ~~~~a~rly---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l---------~~~v~ 355 (425)
T KOG2695|consen 288 NGWCAQRLY---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL---------PAHVK 355 (425)
T ss_pred CCcceEEEE---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccc---------ccccc
Confidence 222233333 467788887766 678888889999999999987655 67777765443211 12222
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC----ceEEEEec
Q 020454 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET----PIKAVAEE 267 (326)
Q Consensus 225 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~i~~v~~s 267 (326)
++...+++++.|...|||.++.+ +.+.++..... .+.+++|.
T Consensus 356 ~eeg~I~s~GdDcytRiWsl~~g-hLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 356 EEEGSIFSVGDDCYTRIWSLDSG-HLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cccceEEEccCeeEEEEEecccC-ceeeccCCCCccccccccceehh
Confidence 23337888999999999999977 65666654433 34455553
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.75 E-value=1.7e-05 Score=66.61 Aligned_cols=99 Identities=13% Similarity=0.147 Sum_probs=69.3
Q ss_pred CceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC---CcEEEEECCCC
Q 020454 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTG 290 (326)
Q Consensus 214 ~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d---g~v~iwd~~~~ 290 (326)
..|...+|.|..++--+++|-++-.+.++|++.. + .+...+..=..+.|+|.+++++.++-| |.+-+||....
T Consensus 275 ~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l-~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 275 DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---L-RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ccceeeeecccCCceeEEecccccceeecccccc---e-EEecCCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 5688999999655433444557889999999954 2 333445556777899999999976654 67999998765
Q ss_pred eEEE-EEcceecceEEEEEECCCCCEEEEe
Q 020454 291 KLLG-CFIGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 291 ~~~~-~~~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
..+. .+.+. ...-..|+|+++++-+.
T Consensus 351 f~~~~~~~~~---n~s~~~wspd~qF~~~~ 377 (561)
T COG5354 351 FKVAGAFNGL---NTSYCDWSPDGQFYDTD 377 (561)
T ss_pred eEEEEEeecC---CceEeeccCCceEEEec
Confidence 4443 55543 34455788998877654
No 291
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=5.6e-06 Score=70.22 Aligned_cols=221 Identities=10% Similarity=0.025 Sum_probs=134.7
Q ss_pred CCCCCeEEEEec-----------CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454 62 SQNDPLLAVARK-----------NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (326)
Q Consensus 62 ~~~~~~l~~g~~-----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~ 130 (326)
++.++||++-+. ...+.|||+.+|.++..+..+. ....+..+-.+. .++.+++.-
T Consensus 258 SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~------~~~~~WP~frWS--------~DdKy~Arm 323 (698)
T KOG2314|consen 258 SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIK------SPYLKWPIFRWS--------HDDKYFARM 323 (698)
T ss_pred CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccC------CCccccceEEec--------cCCceeEEe
Confidence 445557776432 2579999999999998888641 223333343343 556666666
Q ss_pred cCCcEEEEEccccccccccccceEEEEEcc--CCCceEEEEEcCCCCEEEEecCC-----CeEEEEECCCceeeeeecCC
Q 020454 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPP 203 (326)
Q Consensus 131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~ 203 (326)
....|.||+..... +++.+ .-..|....|+|.+++||-=... ..+.+-.+.+++.+....-+
T Consensus 324 ~~~sisIyEtpsf~-----------lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf 392 (698)
T KOG2314|consen 324 TGNSISIYETPSFM-----------LLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF 392 (698)
T ss_pred ccceEEEEecCcee-----------eecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccce
Confidence 66888888744321 22211 12468888999998888763322 23455555555444432221
Q ss_pred CCCCCCcCCCCceeeeEEeecCCCcEEEEE----------eCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeE
Q 020454 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAG----------TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI 273 (326)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~----------~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l 273 (326)
.|..+..+-.++|.+|+.- +.-..+.|+.++...-|+..+... ..|...+|-|.|+.+
T Consensus 393 -----------nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk-e~vi~FaWEP~gdkF 460 (698)
T KOG2314|consen 393 -----------NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK-ESVIAFAWEPHGDKF 460 (698)
T ss_pred -----------eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc-hheeeeeeccCCCeE
Confidence 1333333333455555532 222346778888665677776655 567888999999887
Q ss_pred EEEc--C-CCcEEEEECCC-C---eEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454 274 YIGN--G-SGDLASVDIRT-G---KLLGCFIGKCSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 274 ~~g~--~-dg~v~iwd~~~-~---~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
++-+ . ..++.+|.+++ . +++..+. ....+.+.|+|.|++++.+..=
T Consensus 461 ~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vfwsPkG~fvvva~l~ 513 (698)
T KOG2314|consen 461 AVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVFWSPKGRFVVVAALV 513 (698)
T ss_pred EEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEEEcCCCcEEEEEEec
Confidence 7333 2 35689998873 2 3344444 3467889999999999987653
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=1.3e-05 Score=69.21 Aligned_cols=233 Identities=12% Similarity=0.143 Sum_probs=126.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-+++.++.+|.+..+|.+++ ++ .|..+.... +.+.-.. .+..++++..+|.|..+|.++|+.+..+...
T Consensus 121 ~~v~v~~~~g~l~ald~~tG-----~~--~W~~~~~~~-~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDG-----EV--AWQTKVAGE-ALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred CEEEEEcCCCEEEEEECCCC-----CC--cccccCCCc-eecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCC
Confidence 57888999999999999887 44 333221111 1110000 1235788889999999999999987766532
Q ss_pred CCCC-CCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc----------------------------
Q 020454 95 GDSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------------------------- 145 (326)
Q Consensus 95 ~~~~-~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~---------------------------- 145 (326)
.+.. ......++. .++.++.++.+|.+..++......
T Consensus 190 ~~~~~~~~~~sP~v--------------~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~ 255 (394)
T PRK11138 190 VPSLTLRGESAPAT--------------AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV 255 (394)
T ss_pred CCcccccCCCCCEE--------------ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence 1100 000011111 112344445555544433322110
Q ss_pred ----ccccccceEEEEEccCCCceEEEEE------cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCc
Q 020454 146 ----SAESSCSTVKSWNVCASGTIAFSKV------DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW 215 (326)
Q Consensus 146 ----~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (326)
.....++.+..++......+....+ ...+..++.++.++.+..+|..+++.+++....... .
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~--------~ 327 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR--------L 327 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC--------c
Confidence 0000112222222222222221111 113466777788999999999999888764321111 0
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEE-EEecCCCCeEEEEcCCCcEEEEEC
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVDI 287 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~-v~~s~~~~~l~~g~~dg~v~iwd~ 287 (326)
..+.... ++ .++.++.+|.++..|..++ +.+.+.+.....+.+ ..+ .+..|++++.||.|+.++.
T Consensus 328 ~~sp~v~---~g-~l~v~~~~G~l~~ld~~tG-~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 328 LTAPVLY---NG-YLVVGDSEGYLHWINREDG-RFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ccCCEEE---CC-EEEEEeCCCEEEEEECCCC-CEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 1111222 33 7888999999999999987 556666544333332 122 3558899999999988864
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.73 E-value=2.9e-05 Score=60.75 Aligned_cols=196 Identities=15% Similarity=0.116 Sum_probs=122.9
Q ss_pred CCceEEEEecCCcEEEEEccccccccccccceEEEEEccC--CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeee
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 199 (326)
+++.+++.-.|..|.+...+.+- ...+....+.. ...=+.++|+||+.+||.+...|+|++||+.. ..++.
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Ddf------~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDDF------SSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCCc------hheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 56778888888888877654332 11223333322 23467899999999999999999999999975 33444
Q ss_pred ecCCCCCCCCcCCCCceeeeEEeecCC----CcEEEEEeCCCeEEEEeCCC----CCCceeEEee---cCCceEEEEecC
Q 020454 200 AKPPPKNSLGIFTPTWFTSAAFLSIDD----HRKFVAGTNDHQVRLYDTSA----QRRPVMSFDF---RETPIKAVAEEP 268 (326)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~~l~~~~~dg~v~iwd~~~----~~~~~~~~~~---~~~~i~~v~~s~ 268 (326)
+......... ....|.++.|..... ...|++...+|.++=|-+.. .-+..+++.. ....|.++.|+|
T Consensus 80 I~p~~~~~~d--~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 80 IPPAMSFPGD--LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred cCcccccCCc--cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 4332211111 123566777765321 22577778888888777532 1123455554 345899999999
Q ss_pred CCCeEEEEcC-CC----------cEEEEECCCCeE------------------------E----EEEcceecceEEEEEE
Q 020454 269 DSFNIYIGNG-SG----------DLASVDIRTGKL------------------------L----GCFIGKCSGSIRSIAR 309 (326)
Q Consensus 269 ~~~~l~~g~~-dg----------~v~iwd~~~~~~------------------------~----~~~~~~~~~~v~~l~~ 309 (326)
..+.|++|+. .. -+..|.+-++.+ + ...++.....|..|..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 9888776543 22 245565433211 0 0011112567899999
Q ss_pred CCCCCEEEEeccCccCC
Q 020454 310 HPTLPIIASCGFLEAAS 326 (326)
Q Consensus 310 ~p~~~~l~s~s~D~~~~ 326 (326)
+|++..||+...+|..+
T Consensus 238 SPdg~~La~ih~sG~ls 254 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLS 254 (282)
T ss_pred CCCCCEEEEEEcCCeEE
Confidence 99999999999998753
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.72 E-value=1.3e-05 Score=64.08 Aligned_cols=210 Identities=16% Similarity=0.209 Sum_probs=124.3
Q ss_pred CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccce
Q 020454 74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST 153 (326)
Q Consensus 74 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~ 153 (326)
+|+|..||..+|+.+.....- .......... .. .++.+++++.++.++.+|.....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~------~~~~~~~~~~-~~--------~~~~v~~~~~~~~l~~~d~~tG~--------- 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG------PGIGGPVATA-VP--------DGGRVYVASGDGNLYALDAKTGK--------- 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS------SSCSSEEETE-EE--------ETTEEEEEETTSEEEEEETTTSE---------
T ss_pred CCEEEEEECCCCCEEEEEECC------CCCCCccceE-EE--------eCCEEEEEcCCCEEEEEECCCCC---------
Confidence 689999999999988777541 1112222111 11 45678888999999999965432
Q ss_pred EEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee-cCCCCCCCCcCCCCceeeeEEeecCCCcEEEE
Q 020454 154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (326)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~ 232 (326)
.+|.......+.... ...+..++++..++.|..+|..+++.++.. .... +.... ........ .+..+++
T Consensus 58 -~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-----~~~~~~~~--~~~~~~~ 127 (238)
T PF13360_consen 58 -VLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-PPAGV-----RSSSSPAV--DGDRLYV 127 (238)
T ss_dssp -EEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-CTCST-----B--SEEEE--ETTEEEE
T ss_pred -EEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeeccccc-ccccc-----ccccCceE--ecCEEEE
Confidence 244443333222111 123455566668889999999999999984 3321 11111 11112222 2347888
Q ss_pred EeCCCeEEEEeCCCCCCceeEEeecCCc----------e-EEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceec
Q 020454 233 GTNDHQVRLYDTSAQRRPVMSFDFRETP----------I-KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS 301 (326)
Q Consensus 233 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~----------i-~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~ 301 (326)
+..++.|..+|++++ +.+......... + ..+.+. ++ .++.++.++.+..+|+.+++.+.+.. .
T Consensus 128 ~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~ 201 (238)
T PF13360_consen 128 GTSSGKLVALDPKTG-KLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP---I 201 (238)
T ss_dssp EETCSEEEEEETTTT-EEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC---S
T ss_pred EeccCcEEEEecCCC-cEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec---C
Confidence 888999999999988 556666654322 1 233332 34 78888888864444999999764333 2
Q ss_pred ceEEEEEECCCCCEEEEeccCcc
Q 020454 302 GSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 302 ~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
..+..+ ..+++..|+.++.|+.
T Consensus 202 ~~~~~~-~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 202 SGIYSL-PSVDGGTLYVTSSDGR 223 (238)
T ss_dssp S-ECEC-EECCCTEEEEEETTTE
T ss_pred CCccCC-ceeeCCEEEEEeCCCE
Confidence 233332 2356667777766654
No 295
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.72 E-value=9.2e-06 Score=68.17 Aligned_cols=208 Identities=12% Similarity=0.065 Sum_probs=123.2
Q ss_pred cEEEEeccccceeeeecccCCCCCCCCCCC-eeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceE
Q 020454 76 LTDILNPLNGDLRVAISNAGDSGAQPEDDG-IVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV 154 (326)
Q Consensus 76 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~ 154 (326)
.+.+||+.+|.++..+.....+ .-+. + +.+ . .++.+++--....++++++.. .. . ....
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~----~~~Wp~--~k~-s--------~~D~y~ARvv~~sl~i~e~t~-n~-~---~~p~ 168 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQP----YLGWPV--LKF-S--------IDDKYVARVVGSSLYIHEITD-NI-E---EHPF 168 (561)
T ss_pred ceeEEeccCceeEeeccccCCc----ccccce--eee-e--------ecchhhhhhccCeEEEEecCC-cc-c---cCch
Confidence 5999999999988887753211 0011 2 222 2 222333333566788888622 11 1 1111
Q ss_pred EEEEccCCCceEEEEEcCCC--CEEEE-----ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC
Q 020454 155 KSWNVCASGTIAFSKVDISE--KFSLF-----GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH 227 (326)
Q Consensus 155 ~~~~~~~~~~v~~~~~~~~~--~~l~s-----g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 227 (326)
+..+ ...|....++|.+ ..||. .+....++||.+..++.+....-...+. ..+.|.+. |
T Consensus 169 ~~lr---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~---------~qLkW~~~--g 234 (561)
T COG5354 169 KNLR---PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSG---------VQLKWQVL--G 234 (561)
T ss_pred hhcc---ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecc---------cEEEEecC--C
Confidence 1111 3567888888864 33443 5778889999998665543322111111 13455553 3
Q ss_pred cEEEEE--e---------CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE--EEcCCCcEEEEECCCCeEEE
Q 020454 228 RKFVAG--T---------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY--IGNGSGDLASVDIRTGKLLG 294 (326)
Q Consensus 228 ~~l~~~--~---------~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~--~g~~dg~v~iwd~~~~~~~~ 294 (326)
++|+.- . ....++|++++... +.......++|...+|.|.++.++ .|-..-.+.++|++.. +..
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~--i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~ 311 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERS--IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF 311 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeecccc--cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEE
Confidence 333221 1 12467888887432 222225578999999999987766 5567889999999865 544
Q ss_pred EEcceecceEEEEEECCCCCEEEEeccCc
Q 020454 295 CFIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 295 ~~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
.++ .+.=+.+.|+|.+++++.+|.|.
T Consensus 312 ~~P---e~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 312 YFP---EQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred ecC---CcccccccccCcccEEEEecCCc
Confidence 443 55667788999999988888775
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.70 E-value=1.8e-05 Score=74.68 Aligned_cols=203 Identities=13% Similarity=0.035 Sum_probs=122.3
Q ss_pred CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEe
Q 020454 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180 (326)
Q Consensus 101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 180 (326)
...+.|.++.++. +...++.+..+|.|.+...+.... ......+... ...|.+++|+||+.+|+..
T Consensus 73 ~~~~~ivs~~yl~--------d~~~l~~~~~~Gdi~~~~~~~~~~--~~~~E~VG~v----d~GI~a~~WSPD~Ella~v 138 (928)
T PF04762_consen 73 DPNDKIVSFQYLA--------DSESLCIALASGDIILVREDPDPD--EDEIEIVGSV----DSGILAASWSPDEELLALV 138 (928)
T ss_pred CCCCcEEEEEecc--------CCCcEEEEECCceEEEEEccCCCC--CceeEEEEEE----cCcEEEEEECCCcCEEEEE
Confidence 3447889999887 667899999999999884332110 0011111111 4689999999999999998
Q ss_pred cCCCeEEEEECC----Cce-----------ee--------eeecCCCCCC---------------CCcCCCCceeeeEEe
Q 020454 181 GKGVEVNVWDLD----KCE-----------KI--------WTAKPPPKNS---------------LGIFTPTWFTSAAFL 222 (326)
Q Consensus 181 ~~d~~i~iwd~~----~~~-----------~~--------~~~~~~~~~~---------------~~~~~~~~v~~~~~~ 222 (326)
+.++++.+-+-. ... .+ .++++..... ..+.....-..++|-
T Consensus 139 T~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWR 218 (928)
T PF04762_consen 139 TGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWR 218 (928)
T ss_pred eCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEEC
Confidence 888887765421 110 00 1111100000 000011133455665
Q ss_pred ecCCCcEEEEEeC---C---CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC---CCcEEEEECCCCeEE
Q 020454 223 SIDDHRKFVAGTN---D---HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLL 293 (326)
Q Consensus 223 p~~~~~~l~~~~~---d---g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~---dg~v~iwd~~~~~~~ 293 (326)
.||.+||+.+. . ..+|+|+-. + .....-+.-.+--..++|.|.|++||+... ...|.+|.- +|-..
T Consensus 219 --GDG~yFAVss~~~~~~~~R~iRVy~Re-G-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrh 293 (928)
T PF04762_consen 219 --GDGEYFAVSSVEPETGSRRVIRVYSRE-G-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRH 293 (928)
T ss_pred --CCCcEEEEEEEEcCCCceeEEEEECCC-c-eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEe
Confidence 48889888764 2 579999866 3 212222222333456899999999997654 345777764 44443
Q ss_pred EEEcc---eecceEEEEEECCCCCEEEEeccC
Q 020454 294 GCFIG---KCSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 294 ~~~~~---~~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
..|.- +....|..|.|++++.+||..-.|
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~ 325 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLED 325 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence 33332 125689999999999999986544
No 297
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.70 E-value=9.3e-05 Score=69.95 Aligned_cols=242 Identities=12% Similarity=0.123 Sum_probs=143.8
Q ss_pred eeeeccCC---CCCceEEEEEeeeCCCCCeEEEEecCCcEEEE----eccccceeeeecccCCCCCCCCCCCeeeeeccc
Q 020454 41 VVERWGDP---HSSNCVLAASIDDSQNDPLLAVARKNGLTDIL----NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFK 113 (326)
Q Consensus 41 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 113 (326)
....|..+ .....++++.+..... .++++..+|.|.++ +..+.+. ..... -+..|.++.|.+
T Consensus 62 ~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~--------vd~GI~a~~WSP 130 (928)
T PF04762_consen 62 VLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDIILVREDPDPDEDEI-EIVGS--------VDSGILAASWSP 130 (928)
T ss_pred EEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceEEEEEccCCCCCcee-EEEEE--------EcCcEEEEEECC
Confidence 44455433 3445666666654444 49999999999999 5543332 22221 125789899877
Q ss_pred ccccccCCCCceEEEEecCCcEEEEEcccccc--------------------------ccccccce---------EE---
Q 020454 114 RQREESSSRSRTLLTCTTKGKASMRSIEVTKV--------------------------SAESSCST---------VK--- 155 (326)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~--------------------------~~~~~~~~---------~~--- 155 (326)
+...++..+.++++.+.+-+.... ..|+..+. +.
T Consensus 131 --------D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d 202 (928)
T PF04762_consen 131 --------DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVD 202 (928)
T ss_pred --------CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccc
Confidence 667899999999987775332111 00110000 00
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEecC---C---CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454 156 SWNVCASGTIAFSKVDISEKFSLFGGK---G---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (326)
Q Consensus 156 ~~~~~~~~~v~~~~~~~~~~~l~sg~~---d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 229 (326)
.-.+.....-..++|-.||.|+|+.+. . ..++||+-+ |........ .. .--.+++|.| .|++
T Consensus 203 ~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~--v~-------gLe~~l~WrP--sG~l 270 (928)
T PF04762_consen 203 EGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP--VD-------GLEGALSWRP--SGNL 270 (928)
T ss_pred cCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc--CC-------CccCCccCCC--CCCE
Confidence 000001224557889999999998765 2 469999965 443332221 11 1133668988 5668
Q ss_pred EEEEeC---CCeEEEEeCCCCCCceeEEe--ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE--EEEcceecc
Q 020454 230 FVAGTN---DHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GCFIGKCSG 302 (326)
Q Consensus 230 l~~~~~---dg~v~iwd~~~~~~~~~~~~--~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~--~~~~~~~~~ 302 (326)
+|+... ...|.+|.-...+.--..+. .....|..++|++++..|+.--.| .|.+|-..+...- +.+.-....
T Consensus 271 IA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~ 349 (928)
T PF04762_consen 271 IASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSE 349 (928)
T ss_pred EEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCC
Confidence 887754 35677777553322112222 345689999999999999987766 4999998876532 223321134
Q ss_pred eEEEEEECCCCC
Q 020454 303 SIRSIARHPTLP 314 (326)
Q Consensus 303 ~v~~l~~~p~~~ 314 (326)
.+..+.|+|..+
T Consensus 350 ~~~~~~Wdpe~p 361 (928)
T PF04762_consen 350 SVNFVKWDPEKP 361 (928)
T ss_pred CCCceEECCCCC
Confidence 456699999654
No 298
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.68 E-value=7.7e-05 Score=62.42 Aligned_cols=176 Identities=16% Similarity=0.102 Sum_probs=119.3
Q ss_pred CCceEEEEecCCcEEEEEccccccccccccceEEEEEcc--------CCC---c---eEEEEEcCCCCEEEEecCCCeEE
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--------ASG---T---IAFSKVDISEKFSLFGGKGVEVN 187 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~---v~~~~~~~~~~~l~sg~~d~~i~ 187 (326)
.++.-+.-+..|.|.++|.+.+.. ...++. ... + ....+.. +|++++..+. |...
T Consensus 276 sDGkrIvFq~~GdIylydP~td~l---------ekldI~lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VSR-GkaF 344 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETDSL---------EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVSR-GKAF 344 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcCcc---------eeeecCCccccccccccccCHHHhhhhhccC-CCcEEEEEec-CcEE
Confidence 566777888899999999765432 111111 000 0 1112222 5677777665 3555
Q ss_pred EEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-eEEEEeCCCCCCceeEEeecCCceEEEEe
Q 020454 188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDFRETPIKAVAE 266 (326)
Q Consensus 188 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~~i~~v~~ 266 (326)
|.+...+-.+.. .++..|.-..+.. +++-++.|..|| .+-|||.+++ .+..+...-+.|.++..
T Consensus 345 i~~~~~~~~iqv-----------~~~~~VrY~r~~~--~~e~~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~av~v 409 (668)
T COG4946 345 IMRPWDGYSIQV-----------GKKGGVRYRRIQV--DPEGDVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIEAVKV 409 (668)
T ss_pred EECCCCCeeEEc-----------CCCCceEEEEEcc--CCcceEEeccCCceEEEEecCCc--eEEEeeCCccceEEEEE
Confidence 554433322221 1223344444443 334688999999 9999999976 36777777789999999
Q ss_pred cCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 267 EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 267 s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
+|+|++++++.....+-+.|+.+|.....=+.. .+-|+.++|||++++||-+=-+|.
T Consensus 410 s~dGK~~vvaNdr~el~vididngnv~~idkS~-~~lItdf~~~~nsr~iAYafP~gy 466 (668)
T COG4946 410 SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE-YGLITDFDWHPNSRWIAYAFPEGY 466 (668)
T ss_pred cCCCcEEEEEcCceEEEEEEecCCCeeEecccc-cceeEEEEEcCCceeEEEecCcce
Confidence 999999999999999999999999876554554 788999999999999997755553
No 299
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.3e-06 Score=72.37 Aligned_cols=150 Identities=14% Similarity=0.193 Sum_probs=97.9
Q ss_pred CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCce--EEEEecCCcEEEEEccccccccccccc
Q 020454 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT--LLTCTTKGKASMRSIEVTKVSAESSCS 152 (326)
Q Consensus 75 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~--l~~~~~~g~v~i~~~~~~~~~~~~~~~ 152 (326)
.++.+++++.....-.+ ...++|.+..|.+ .+.. ++-|..-..+.|++++-.
T Consensus 251 q~Lyll~t~g~s~~V~L---------~k~GPVhdv~W~~--------s~~EF~VvyGfMPAkvtifnlr~~--------- 304 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPL---------LKEGPVHDVTWSP--------SGREFAVVYGFMPAKVTIFNLRGK--------- 304 (566)
T ss_pred ceEEEEEecCceEEEec---------CCCCCceEEEECC--------CCCEEEEEEecccceEEEEcCCCC---------
Confidence 46788887633322222 3348999888755 3323 444556678888886532
Q ss_pred eEEEEEccCCCceEEEEEcCCCCEEEEecCC---CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (326)
Q Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 229 (326)
-+++.. .++=+++-|+|.|++|+.+|-+ |.|.+||+.+.+.+..... .+-+-+.|+| +|.+
T Consensus 305 --~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-----------~~tt~~eW~P--dGe~ 368 (566)
T KOG2315|consen 305 --PVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-----------ANTTVFEWSP--DGEY 368 (566)
T ss_pred --EeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-----------CCceEEEEcC--CCcE
Confidence 233332 4567789999999999887765 7799999998776665443 2344668998 6778
Q ss_pred EEEEeC------CCeEEEEeCCCCCCceeEEeecCCceEEEEecCC
Q 020454 230 FVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD 269 (326)
Q Consensus 230 l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~ 269 (326)
|++++. |+.++||+... ..++...... ....+.|-|.
T Consensus 369 flTATTaPRlrvdNg~KiwhytG--~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 369 FLTATTAPRLRVDNGIKIWHYTG--SLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred EEEEeccccEEecCCeEEEEecC--ceeehhhhhH-hHhheeeeec
Confidence 888764 67899999873 2344333322 4666777654
No 300
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.2e-06 Score=72.27 Aligned_cols=251 Identities=12% Similarity=0.015 Sum_probs=149.5
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec-CCcEEEEeccccceeeeecc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISN 93 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~~~ 93 (326)
--+++++.||.+|.|.-..- .|. ..+..+..+. ..+ .+..-+..+-++.+.+. |..+++||+++-..+.-++.
T Consensus 21 ~fiiqASlDGh~KFWkKs~i-sGv-EfVKhFraHL--~~I--~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL 94 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRI-SGV-EFVKHFRAHL--GVI--LSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL 94 (558)
T ss_pred heEEeeecchhhhhcCCCCc-cce-eehhhhHHHH--HHH--HhhhccccceeEeeccCcccceeEEEeeccchhhhccc
Confidence 34788999999999986542 111 1221221111 111 11122233445667666 89999999986655433333
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceE--EEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL--LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l--~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 171 (326)
.-.+ +.+. +...+ ++.-.+ ++.-.+|.+.++|-.... ..+..++--+..+|.++.+.
T Consensus 95 ~~lP------g~a~---wv~sk-----Gd~~s~IAVs~~~sg~i~VvD~~~d~-------~q~~~fkklH~sPV~~i~y~ 153 (558)
T KOG0882|consen 95 VDLP------GFAE---WVTSK-----GDKISLIAVSLFKSGKIFVVDGFGDF-------CQDGYFKKLHFSPVKKIRYN 153 (558)
T ss_pred ccCC------CceE---EecCC-----CCeeeeEEeecccCCCcEEECCcCCc-------CccceecccccCceEEEEee
Confidence 1111 2222 11111 011123 333467888888843322 13444555567899999999
Q ss_pred CCCCEEEEecCCCeEEEEECCC------ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC
Q 020454 172 ISEKFSLFGGKGVEVNVWDLDK------CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (326)
Q Consensus 172 ~~~~~l~sg~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~ 245 (326)
+.+..+++....|.|.-|.... .+..+.++....-..........+++.|+| ++..+.+-+.|..|++++.+
T Consensus 154 qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp--~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 154 QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP--DGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc--ccCcccccCcccEEEEEEec
Confidence 9999999999999999999873 222233322211111112234567889998 56689999999999999998
Q ss_pred CCCCceeEEe--------------------------------ecC-CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454 246 AQRRPVMSFD--------------------------------FRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 246 ~~~~~~~~~~--------------------------------~~~-~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~ 292 (326)
+++ .++.+. -+. ..-+.+.|...|++|+-|+.=| |++.++.++++
T Consensus 232 tGk-lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 232 TGK-LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred cch-hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence 763 222221 011 1335567888899999887764 89999998877
Q ss_pred EEEE
Q 020454 293 LGCF 296 (326)
Q Consensus 293 ~~~~ 296 (326)
.+.+
T Consensus 310 ~ri~ 313 (558)
T KOG0882|consen 310 VRIL 313 (558)
T ss_pred EEEe
Confidence 6654
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=2.5e-05 Score=69.10 Aligned_cols=198 Identities=12% Similarity=-0.016 Sum_probs=109.5
Q ss_pred CCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCC--CeEEEEecCCcEEEEeccccceee
Q 020454 12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQND--PLLAVARKNGLTDILNPLNGDLRV 89 (326)
Q Consensus 12 ~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~g~~dg~i~i~~~~~~~~~~ 89 (326)
.-.++++++|-.|.|-+||.... .+...+.++..+. ..++|.+.... .+|++-....+|.+|+..+|+...
T Consensus 77 ~~~lliAsaD~~GrIil~d~~~~-----s~~~~l~~~~~~~--qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 77 SSQLLIASADISGRIILVDFVLA-----SVINWLSHSNDSV--QDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred ccceeEEeccccCcEEEEEehhh-----hhhhhhcCCCcch--hheeeeeccCcchheeEEecCCcEEEEEEccCCceee
Confidence 34589999999999999999876 3332333333333 46666654433 367777788999999999998765
Q ss_pred eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCC--C----
Q 020454 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS--G---- 163 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--~---- 163 (326)
.+.. ......++.+.+ .+...+..-+..|.+.+-+.-... ..+...+.+.+... .
T Consensus 150 k~~y--------s~~iLs~f~~DP-------fd~rh~~~l~s~g~vl~~~~l~~s----ep~~pgk~~qI~sd~Sdl~~l 210 (1062)
T KOG1912|consen 150 KYDY--------SHEILSCFRVDP-------FDSRHFCVLGSKGFVLSCKDLGLS----EPDVPGKEFQITSDHSDLAHL 210 (1062)
T ss_pred cccc--------CCcceeeeeeCC-------CCcceEEEEccCceEEEEeccCCC----CCCCCceeEEEecCccchhhh
Confidence 5543 113334344322 123445555666666655533211 11222222222111 0
Q ss_pred ---------------------ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454 164 ---------------------TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (326)
Q Consensus 164 ---------------------~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (326)
-...++|+|.-+.++-......+.++|++-..++....-.. ..+.-+.+.
T Consensus 211 ere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier---------~~akfv~vl 281 (1062)
T KOG1912|consen 211 ERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIER---------GGAKFVDVL 281 (1062)
T ss_pred hhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEecc---------CCcceeEec
Confidence 02356677764333333466789999998766655433221 112233444
Q ss_pred ecCCCcEEEEEeCCCeEEEEeC
Q 020454 223 SIDDHRKFVAGTNDHQVRLYDT 244 (326)
Q Consensus 223 p~~~~~~l~~~~~dg~v~iwd~ 244 (326)
|......|+....||.+.+|-.
T Consensus 282 P~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEe
Confidence 5433345556666666666643
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2.6e-05 Score=69.65 Aligned_cols=209 Identities=14% Similarity=0.089 Sum_probs=131.2
Q ss_pred CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCc-----EEE
Q 020454 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK-----ASM 137 (326)
Q Consensus 63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~-----v~i 137 (326)
+++..++.|+.+|.|.+++-. -+.+..++.+ .+ +.+..+...+ ..+.|++.++|+. +++
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~------~~-siv~~L~~~~--------~~~~L~sv~Ed~~~np~llki 96 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSS-FQLIRGFQAY------EQ-SIVQFLYILN--------KQNFLFSVGEDEQGNPVLLKI 96 (933)
T ss_pred CCCceEEEeeccccEEEeccc-ceeeehheec------ch-hhhhHhhccc--------CceEEEEEeecCCCCceEEEE
Confidence 344579999999999998752 2332444431 11 2244455444 3357888888765 799
Q ss_pred EEcccccccc-ccccceEEEEEcc---CCCceEEEEEcCCCCEEEEecCCCeEEEEECCC--ceeeeeecCCCCCCCCcC
Q 020454 138 RSIEVTKVSA-ESSCSTVKSWNVC---ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--CEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 138 ~~~~~~~~~~-~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~ 211 (326)
|+++..+... ..-.+..+++... ...++.+++++.+-+.+|+|-.+|.|..+.-.- .+-... .....
T Consensus 97 w~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-------~~~~~ 169 (933)
T KOG2114|consen 97 WDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-------DYSHR 169 (933)
T ss_pred ecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-------eeecc
Confidence 9998754221 1112223454422 245788999999999999999999998886331 111111 11112
Q ss_pred CCCceeeeEEeecCCCcE-EEEEeCCCeEEEEeCCCCCCceeE-EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 212 TPTWFTSAAFLSIDDHRK-FVAGTNDHQVRLYDTSAQRRPVMS-FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
...+|+++.+.. ++.. +++++ -..|.+|.+... .|... +..+...+.|.++++....+++++.. .+.+|+...
T Consensus 170 ~~~pITgL~~~~--d~~s~lFv~T-t~~V~~y~l~gr-~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~ 244 (933)
T KOG2114|consen 170 GKEPITGLALRS--DGKSVLFVAT-TEQVMLYSLSGR-TPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDG 244 (933)
T ss_pred CCCCceeeEEec--CCceeEEEEe-cceeEEEEecCC-CcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCC
Confidence 235799999975 3333 33433 357899998844 44444 77788889999998765545554443 799999987
Q ss_pred CeEEEEEc-ce
Q 020454 290 GKLLGCFI-GK 299 (326)
Q Consensus 290 ~~~~~~~~-~~ 299 (326)
..+...|. +|
T Consensus 245 ~~~cfaf~~g~ 255 (933)
T KOG2114|consen 245 RGPCFAFEVGE 255 (933)
T ss_pred cceeeeecCCC
Confidence 77777776 54
No 303
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.62 E-value=1.9e-07 Score=81.46 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=112.8
Q ss_pred ceEEEEEcCC--CCEEEEecCCCeEEEEECCC---ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCe
Q 020454 164 TIAFSKVDIS--EKFSLFGGKGVEVNVWDLDK---CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (326)
Q Consensus 164 ~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~ 238 (326)
.+....|+|. ..+-++......-.+|++.. ....+.+.+|. ..|+.+.|+|. ....+++++.|-.
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghs---------raitd~n~~~q-~pdVlatcsvdt~ 138 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHS---------RAITDINFNPQ-HPDVLATCSVDTY 138 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCc---------cceeccccCCC-CCcceeecccccc
Confidence 3555566553 34444444555566888764 23445555554 56888899986 4559999999999
Q ss_pred EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEcceecceEEEEEECC-CCCEE
Q 020454 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHP-TLPII 316 (326)
Q Consensus 239 v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p-~~~~l 316 (326)
+..||+++...|+..+..-....+.|+|+-....+.+.+..+.|++||.+.| .++..+++| ...|++++|+. ....+
T Consensus 139 vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~-vs~vn~~~fnr~~~s~~ 217 (1081)
T KOG0309|consen 139 VHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGH-VSSVNSIDFNRFKYSEI 217 (1081)
T ss_pred ceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEeccc-ceeeehHHHhhhhhhhh
Confidence 9999999888888888776677788999987666777788889999999975 567888887 99999999985 33467
Q ss_pred EEeccCccC
Q 020454 317 ASCGFLEAA 325 (326)
Q Consensus 317 ~s~s~D~~~ 325 (326)
.+++.||++
T Consensus 218 ~s~~~d~tv 226 (1081)
T KOG0309|consen 218 MSSSNDGTV 226 (1081)
T ss_pred cccCCCCce
Confidence 788888875
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=3.3e-08 Score=87.72 Aligned_cols=205 Identities=19% Similarity=0.178 Sum_probs=130.7
Q ss_pred CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC--cEEEEEc
Q 020454 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG--KASMRSI 140 (326)
Q Consensus 63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g--~v~i~~~ 140 (326)
...+.|++|+..|.|++|++.+|.-...+. .|..+++.+.... ++..+++.+... ...+|++
T Consensus 1111 ~~~~hL~vG~~~Geik~~nv~sG~~e~s~n--------cH~SavT~vePs~--------dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1111 GGTNHLAVGSHAGEIKIFNVSSGSMEESVN--------CHQSAVTLVEPSV--------DGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred cCCceEEeeeccceEEEEEccCcccccccc--------ccccccccccccC--------CcceeeeeccccCchHHHhcc
Confidence 344589999999999999999888766555 5567777665433 445555444332 4577876
Q ss_pred cccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeE
Q 020454 141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (326)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (326)
.... +....| ..-.++.|+..-..-+.|.......+||++++.++.++-...... . -.-+...
T Consensus 1175 ~s~~-------~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~---~--y~~n~a~ 1237 (1516)
T KOG1832|consen 1175 SSTG-------GPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTS---S--YSNNLAH 1237 (1516)
T ss_pred cccc-------Cccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhh---h--hhccccc
Confidence 5311 122222 234567777655444566666789999999988766533221110 0 0113557
Q ss_pred EeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEccee
Q 020454 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC 300 (326)
Q Consensus 221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~ 300 (326)
|+|.+. +++ .|| .+||.|.. +.++.|......+.. .|+|+|..++.-+ .|||+++-++++..+.-
T Consensus 1238 FsP~D~--LIl---ndG--vLWDvR~~-~aIh~FD~ft~~~~G-~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L- 1302 (1516)
T KOG1832|consen 1238 FSPCDT--LIL---NDG--VLWDVRIP-EAIHRFDQFTDYGGG-GFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL- 1302 (1516)
T ss_pred cCCCcc--eEe---eCc--eeeeeccH-HHHhhhhhheecccc-cccCCCceEEeec-----hhhhhHHHHHHhcCccc-
Confidence 888532 443 345 58999976 667777655444444 7999999999854 47999998888776632
Q ss_pred cceEEEEEECCCCCEEE
Q 020454 301 SGSIRSIARHPTLPIIA 317 (326)
Q Consensus 301 ~~~v~~l~~~p~~~~l~ 317 (326)
.-..+.|+..|.++.
T Consensus 1303 --dqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1303 --DQCAVTFNSTGDVMY 1317 (1516)
T ss_pred --cceEEEeccCccchh
Confidence 345677877776554
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.3e-06 Score=77.00 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=111.8
Q ss_pred CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 201 (326)
.+..++.|+.+|.+++++..... -..+. +... ..+|.++++|+.||+|.|..+-+.+...+..
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~---------~~~~~--~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNP---------KTNFD--HSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred hcceeeeccccceEEEEecCCcc---------ccccc--cccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 56789999999999999854321 00011 1111 4578999999999999999988776655433
Q ss_pred CCCCCCCCcCCCCceeeeEEeec---CCCcEEEEEeCCCeEEEEeCCCC--CCceeEEeecCCceEEEEecCCCCeEEEE
Q 020454 202 PPPKNSLGIFTPTWFTSAAFLSI---DDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDSFNIYIG 276 (326)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~p~---~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~i~~v~~s~~~~~l~~g 276 (326)
.. .++.+++++|. ...+.+++|+.-| +.++.-+-. +..+ .....+++|.++.| .|++||=+
T Consensus 111 f~----------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWa 176 (846)
T KOG2066|consen 111 FK----------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWA 176 (846)
T ss_pred cC----------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEEEEe
Confidence 22 34678899885 2345899999888 888874422 1222 35566789999999 58899987
Q ss_pred cCCCcEEEEECCCCeEEEEEcceecceEE------EEEECCCCCEE
Q 020454 277 NGSGDLASVDIRTGKLLGCFIGKCSGSIR------SIARHPTLPII 316 (326)
Q Consensus 277 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~------~l~~~p~~~~l 316 (326)
+.+| |++||..+++.+..++-. ...++ .+.|.++.+++
T Consensus 177 nd~G-v~vyd~~~~~~l~~i~~p-~~~~R~e~fpphl~W~~~~~LV 220 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQRLTNIPPP-SQSVRPELFPPHLHWQDEDRLV 220 (846)
T ss_pred cCCC-cEEEeccccceeeccCCC-CCCCCcccCCCceEecCCCeEE
Confidence 7775 899999998888776643 23332 56777665543
No 306
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.58 E-value=0.00013 Score=64.66 Aligned_cols=268 Identities=16% Similarity=0.160 Sum_probs=143.6
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCC----CceEEE--EEeeeCCCCCeEEEEecCCcEEEEecccccee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS----SNCVLA--ASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~ 88 (326)
-++..++.+|.+.-.|..++ ++.-++..... ...++. .... .+..+++++.+|.|.-+|.++|+.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~ 133 (488)
T cd00216 62 GDMYFTTSHSALFALDAATG-----KVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQV 133 (488)
T ss_pred CEEEEeCCCCcEEEEECCCC-----hhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEe
Confidence 56788888999999998877 33222211111 000110 0111 1146888999999999999999987
Q ss_pred eeecccCCCCCCCCCCCeee-eecccccccccCCCCceEEEEec---------CCcEEEEEccccccccccccceEEEEE
Q 020454 89 VAISNAGDSGAQPEDDGIVG-LHLFKRQREESSSRSRTLLTCTT---------KGKASMRSIEVTKVSAESSCSTVKSWN 158 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~-l~~~~~~~~~~~~~~~~l~~~~~---------~g~v~i~~~~~~~~~~~~~~~~~~~~~ 158 (326)
-.+...... .....+.+ ... .++.++.++. +|.+..+|....+ .+|.
T Consensus 134 W~~~~~~~~---~~~~~i~ssP~v----------~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~----------~~W~ 190 (488)
T cd00216 134 WKFGNNDQV---PPGYTMTGAPTI----------VKKLVIIGSSGAEFFACGVRGALRAYDVETGK----------LLWR 190 (488)
T ss_pred eeecCCCCc---CcceEecCCCEE----------ECCEEEEeccccccccCCCCcEEEEEECCCCc----------eeeE
Confidence 776642100 00000110 011 2245555543 4555555544322 2232
Q ss_pred ccCC---------------------Cce-EEEEEcCCCCEEEEecCCC------------------eEEEEECCCceeee
Q 020454 159 VCAS---------------------GTI-AFSKVDISEKFSLFGGKGV------------------EVNVWDLDKCEKIW 198 (326)
Q Consensus 159 ~~~~---------------------~~v-~~~~~~~~~~~l~sg~~d~------------------~i~iwd~~~~~~~~ 198 (326)
.... ..+ ....+++.+..++.++.++ .|.-+|..+++.++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 2110 111 1344555567777777654 79999999999999
Q ss_pred eecCCCCCCCCcCC--CCceeeeEEeecCCC---cEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeE
Q 020454 199 TAKPPPKNSLGIFT--PTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI 273 (326)
Q Consensus 199 ~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l 273 (326)
+.+......+.+.. +..+..+. . -++ ..++.++.+|.+...|.+++ +.+.+..... ..++.+| ..+
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~--~-~~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~~---~~~~~~~--~~v 341 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIK--P-KDGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEVE---QPMAYDP--GLV 341 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEecc--c-cCCCeeEEEEEECCCceEEEEECCCC-cEeeEeEeec---cccccCC--ceE
Confidence 87643322211111 11111111 0 122 25788889999999999988 5565554321 1234444 334
Q ss_pred EEE------------------cCCCcEEEEECCCCeEEEEEccee-c------ceEE--EEEECCCCCEEEEeccCcc
Q 020454 274 YIG------------------NGSGDLASVDIRTGKLLGCFIGKC-S------GSIR--SIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 274 ~~g------------------~~dg~v~iwd~~~~~~~~~~~~~~-~------~~v~--~l~~~p~~~~l~s~s~D~~ 324 (326)
+.+ ..+|.+.-.|+.+|+.+-+..... . .+.. .+.. .+.+|+.++.||.
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~ 417 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGY 417 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCe
Confidence 332 246889999999999887665210 0 1111 1222 4567777777775
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.57 E-value=2.4e-06 Score=76.50 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=122.7
Q ss_pred CceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecC
Q 020454 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (326)
Q Consensus 123 ~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 202 (326)
...++.|+....+..+|++... ..+..++... .|.-|+. +++++.+|...|+|.+-|.++.+.+.++..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~--------e~r~~~v~a~-~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a 215 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEK--------ETRTTNVSAS-GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDA 215 (1118)
T ss_pred Ccceeecchhhheeeeecccce--------eeeeeeccCC-ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeec
Confidence 4466777777777777766533 3344444433 2655655 568999999999999999999999999888
Q ss_pred CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC---------CCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCe
Q 020454 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFN 272 (326)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~ 272 (326)
|... +..+.. .|++|++|+. |..|++||+|.. +.+.-+..+.++ .-+.|+|. ...
T Consensus 216 Hs~s---------iSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~ 280 (1118)
T KOG1275|consen 216 HSGS---------ISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTR 280 (1118)
T ss_pred cccc---------eeeeec----cCCeEEEeecccccccccccchhhhhhhhhh-hccCCcccccCc-hhhhhcccccce
Confidence 8744 333333 4558888864 567899999987 445555555444 45678887 567
Q ss_pred EEEEcCCCcEEEEECC---CCeE-EEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 273 IYIGNGSGDLASVDIR---TGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 273 l~~g~~dg~v~iwd~~---~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++.+..|...+-|.. +... .+.+. .....+..++++++++.||-+-.+|.+
T Consensus 281 ~~V~S~sGq~q~vd~~~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 281 LAVTSQSGQFQFVDTATLSNPPAGVKMVN-PNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred EEEEecccceeeccccccCCCccceeEEc-cCCCcceeEEecCCCceEEEecccCcE
Confidence 8888999999999943 3211 12222 224459999999999999999888864
No 308
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.53 E-value=0.00026 Score=61.14 Aligned_cols=73 Identities=27% Similarity=0.353 Sum_probs=60.1
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
.+..|.+.+++|.++ .++.|+.||.|.+||...+ +..+....-..+.++|+|+|..+++|+..|.+.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~--kLvlGC~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSED--KLVLGCEDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccc--eEEEEecCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 445688999998544 8999999999999998855 333334456678999999999999999999999999864
No 309
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.52 E-value=0.00024 Score=63.01 Aligned_cols=104 Identities=16% Similarity=0.079 Sum_probs=68.1
Q ss_pred EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEE------------------EeCCC
Q 020454 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA------------------GTNDH 237 (326)
Q Consensus 176 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~------------------~~~dg 237 (326)
+++.++.+|.+...|.++++.++....... .++..| + .+.. ...+|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~------------~~~~~~---~-~vyv~~~~~~~~~~~~~~~~~~~~~~G 366 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQ------------PMAYDP---G-LVYLGAFHIPLGLPPQKKKRCKKPGKG 366 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeecc------------ccccCC---c-eEEEccccccccCcccccCCCCCCCce
Confidence 678889999999999999999887543100 011111 1 2222 22467
Q ss_pred eEEEEeCCCCCCceeEEeecC--------Cce--EEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454 238 QVRLYDTSAQRRPVMSFDFRE--------TPI--KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (326)
Q Consensus 238 ~v~iwd~~~~~~~~~~~~~~~--------~~i--~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 298 (326)
.+.-.|+.++ +.+.+..... .+. ..+.. .+..|++|+.||.|+.+|.++|+.+.+++-
T Consensus 367 ~l~AlD~~tG-~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 367 GLAALDPKTG-KVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred EEEEEeCCCC-cEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 8888888877 4455544321 111 12222 467899999999999999999999988763
No 310
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.47 E-value=2.5e-05 Score=52.52 Aligned_cols=91 Identities=11% Similarity=0.140 Sum_probs=70.0
Q ss_pred CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc
Q 020454 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (326)
Q Consensus 66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~ 145 (326)
+.|++|+.|..|++|+- .+.+.++.. ...+..|.... ...++.+-.+|+|-+|+-
T Consensus 16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~e---------~~~v~~L~~~~---------~~~F~Y~l~NGTVGvY~~----- 70 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKG--DEIVAEITE---------TDKVTSLCSLG---------GGRFAYALANGTVGVYDR----- 70 (111)
T ss_pred ceEEEecCCcEEEEEeC--CcEEEEEec---------ccceEEEEEcC---------CCEEEEEecCCEEEEEeC-----
Confidence 57999999999999985 355555554 26777787654 368999999999999972
Q ss_pred ccccccceEEEEEccCCCceEEEEEcC---CC-CEEEEecCCCeEEE
Q 020454 146 SAESSCSTVKSWNVCASGTIAFSKVDI---SE-KFSLFGGKGVEVNV 188 (326)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~sg~~d~~i~i 188 (326)
..++|+.+.+..+.++.+.. +| .-|++|-.+|.|-+
T Consensus 71 -------~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 -------SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred -------cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 67899999888888887653 23 47888888888743
No 311
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.46 E-value=1.4e-06 Score=76.14 Aligned_cols=171 Identities=12% Similarity=0.088 Sum_probs=120.4
Q ss_pred CceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCcee-eeee
Q 020454 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK-IWTA 200 (326)
Q Consensus 123 ~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~-~~~~ 200 (326)
..+-++......-.+|.+.. +.+..|......+...|..+.|+|+. ..+++++.|..+..||+++... ++..
T Consensus 81 ~~~wiVsts~qkaiiwnlA~------ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~ 154 (1081)
T KOG0309|consen 81 KPYWIVSTSNQKAIIWNLAK------SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST 154 (1081)
T ss_pred CceeEEecCcchhhhhhhhc------CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee
Confidence 34555555556667888653 33556777777778899999999986 7899999999999999998653 4443
Q ss_pred cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCeEEEEcCC
Q 020454 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGS 279 (326)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~d 279 (326)
..-. ..-+.|+|+.. ++ .+.+.+..+.|++||.+.+..|+..++.|...|..+.|..- ...+.+.+.|
T Consensus 155 ~~w~---------s~asqVkwnyk-~p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d 223 (1081)
T KOG0309|consen 155 SSWR---------SAASQVKWNYK-DP-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND 223 (1081)
T ss_pred eccc---------ccCceeeeccc-Cc-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC
Confidence 3221 22446788765 44 45555667889999999887899999999888999888653 4567789999
Q ss_pred CcEEEEECCCCe--EEEEEcceecceEEEEEECCC
Q 020454 280 GDLASVDIRTGK--LLGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 280 g~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~~p~ 312 (326)
|+|++||..... .-+... ...+|+.-.+-|-
T Consensus 224 ~tvkfw~y~kSt~e~~~~vt--t~~piw~~r~~Pf 256 (1081)
T KOG0309|consen 224 GTVKFWDYSKSTTESKRTVT--TNFPIWRGRYLPF 256 (1081)
T ss_pred Cceeeecccccccccceecc--ccCcceecccccc
Confidence 999999987532 222222 1345555555553
No 312
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=0.00046 Score=59.74 Aligned_cols=142 Identities=11% Similarity=0.054 Sum_probs=83.4
Q ss_pred CCceEEEEEcCCCCEEEE-ecCC--CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CCC
Q 020454 162 SGTIAFSKVDISEKFSLF-GGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDH 237 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~s-g~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~dg 237 (326)
.+......|+|+|+.++. .+.+ ..|.++|+.+++... +..... ......|+| +|+.|+-.+ ..+
T Consensus 232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~---------~d~~p~~SP--DG~~I~F~Sdr~g 299 (419)
T PRK04043 232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPG---------IDVNGNFVE--DDKRIVFVSDRLG 299 (419)
T ss_pred CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCC---------ccCccEECC--CCCEEEEEECCCC
Confidence 344566789999976653 3333 468888887765332 222211 012347888 455555444 333
Q ss_pred --eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC---------CcEEEEECCCCeEEEEEcceecceEEE
Q 020454 238 --QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---------GDLASVDIRTGKLLGCFIGKCSGSIRS 306 (326)
Q Consensus 238 --~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d---------g~v~iwd~~~~~~~~~~~~~~~~~v~~ 306 (326)
.|.++|+.++ . ...+...... ...|+|+|++|+..... ..|.+.|+.+++.. .+... +....
T Consensus 300 ~~~Iy~~dl~~g-~-~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~--~~~~~ 372 (419)
T PRK04043 300 YPNIFMKKLNSG-S-VEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN--GVNQF 372 (419)
T ss_pred CceEEEEECCCC-C-eEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC--CCcCC
Confidence 6777788765 2 2233222112 24899999998844432 36888898887653 33321 23335
Q ss_pred EEECCCCCEEEEeccC
Q 020454 307 IARHPTLPIIASCGFL 322 (326)
Q Consensus 307 l~~~p~~~~l~s~s~D 322 (326)
..|+|||+.|+-.+.+
T Consensus 373 p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 373 PRFSSDGGSIMFIKYL 388 (419)
T ss_pred eEECCCCCEEEEEEcc
Confidence 8899999977766544
No 313
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=0.00027 Score=62.88 Aligned_cols=241 Identities=15% Similarity=0.118 Sum_probs=146.0
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeee----------CCCCCeEEEEecCCcEEEEecccc
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDD----------SQNDPLLAVARKNGLTDILNPLNG 85 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~g~~dg~i~i~~~~~~ 85 (326)
-|++.+.-..|.|-|..+- ++++....+... +..+.|.. .....+||++...|.|.+||...+
T Consensus 27 GLiAygshslV~VVDs~s~-----q~iqsie~h~s~--V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~ 99 (1062)
T KOG1912|consen 27 GLIAYGSHSLVSVVDSRSL-----QLIQSIELHQSA--VTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA 99 (1062)
T ss_pred ceEEEecCceEEEEehhhh-----hhhhccccCccc--eeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh
Confidence 3666667777888887654 344344333322 22222221 123446788888899999999877
Q ss_pred ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCC-ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCC-
Q 020454 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS-RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG- 163 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~-~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~- 163 (326)
..+..+. .+..++..+.|...+. +. ..+++......+.+|+....+ ++|+..-..
T Consensus 100 s~~~~l~--------~~~~~~qdl~W~~~rd-----~Srd~LlaIh~ss~lvLwntdtG~----------k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 100 SVINWLS--------HSNDSVQDLCWVPARD-----DSRDVLLAIHGSSTLVLWNTDTGE----------KFWKYDYSHE 156 (1062)
T ss_pred hhhhhhc--------CCCcchhheeeeeccC-----cchheeEEecCCcEEEEEEccCCc----------eeeccccCCc
Confidence 7666555 4446777787776543 33 578888999999999855432 567654433
Q ss_pred ceEEEEEcCC-CCEEEEecCCCeEEEEECCC-------ceeeeeecCCCC-----------C-----CCCcCCCCceeee
Q 020454 164 TIAFSKVDIS-EKFSLFGGKGVEVNVWDLDK-------CEKIWTAKPPPK-----------N-----SLGIFTPTWFTSA 219 (326)
Q Consensus 164 ~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~-------~~~~~~~~~~~~-----------~-----~~~~~~~~~v~~~ 219 (326)
...|+.++|- .+.+..-+..|.+.+-+.-. ++.......|.. . .-....+.+...+
T Consensus 157 iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 157 ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence 4556999984 35555555666766665432 122222122111 0 0000011123345
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC--CCeEEEEcCCCcEEEEECCC
Q 020454 220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~--~~~l~~g~~dg~v~iwd~~~ 289 (326)
+|+|...+ ++-......+.++|+.-. .++.......+.+.-+.+-|+ ...|+++..||.+.+|--+.
T Consensus 237 af~p~~rn--~lfi~~prellv~dle~~-~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 237 AFSPHWRN--ILFITFPRELLVFDLEYE-CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hcChhhhc--eEEEEeccceEEEcchhh-ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 67886543 333344678999999965 677777766666666677666 45789999999999997554
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.41 E-value=0.00015 Score=63.99 Aligned_cols=104 Identities=12% Similarity=0.032 Sum_probs=69.4
Q ss_pred CCCceeeeEEeecCCCcEEEE-EeCCCeEEEEeCCCCCC-----------ceeEEeecCCceEEEEecCCCCeEEEEcCC
Q 020454 212 TPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDTSAQRR-----------PVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~-~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d 279 (326)
.+.....+.++| +++++++ +..+.+|.++|+.+.+. .+.+.+...++... +|.++|+...+-..|
T Consensus 319 VGKsPHGV~vSP--DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHT-aFDg~G~aytslf~d 395 (635)
T PRK02888 319 VPKNPHGVNTSP--DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHT-AFDGRGNAYTTLFLD 395 (635)
T ss_pred CCCCccceEECC--CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceE-EECCCCCEEEeEeec
Confidence 445667889998 5666555 45689999999987532 23444455556554 899999877788899
Q ss_pred CcEEEEECCC----------CeEEEEEcceecceEE-----EEEECCCCCEEEEe
Q 020454 280 GDLASVDIRT----------GKLLGCFIGKCSGSIR-----SIARHPTLPIIASC 319 (326)
Q Consensus 280 g~v~iwd~~~----------~~~~~~~~~~~~~~v~-----~l~~~p~~~~l~s~ 319 (326)
..|..||+.. ...+.++.-| ..+.. +=.-.|+|++|++.
T Consensus 396 sqv~kwn~~~a~~~~~g~~~~~v~~k~dV~-y~pgh~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 396 SQIVKWNIEAAIRAYKGEKVDPIVQKLDVH-YQPGHNHASMGETKEADGKWLVSL 449 (635)
T ss_pred ceeEEEehHHHHHHhccccCCcceecccCC-CccceeeecCCCcCCCCCCEEEEc
Confidence 9999999886 3445544433 22221 11235788888775
No 315
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.37 E-value=6.4e-07 Score=49.04 Aligned_cols=35 Identities=37% Similarity=0.359 Sum_probs=32.3
Q ss_pred CeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 290 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
++++..+++| .++|++|+|+|++.+|+++|.|+.+
T Consensus 1 g~~~~~~~~h-~~~i~~i~~~~~~~~~~s~~~D~~i 35 (39)
T PF00400_consen 1 GKCVRTFRGH-SSSINSIAWSPDGNFLASGSSDGTI 35 (39)
T ss_dssp EEEEEEEESS-SSSEEEEEEETTSSEEEEEETTSEE
T ss_pred CeEEEEEcCC-CCcEEEEEEecccccceeeCCCCEE
Confidence 4678899998 9999999999999999999999975
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.36 E-value=0.00033 Score=60.48 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=65.3
Q ss_pred cceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE
Q 020454 151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (326)
Q Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l 230 (326)
-+.+.+..+..+..+.+.+++|+...|+.|+.||.|.+||...+..... +. .--++.++|+| +|..+
T Consensus 248 lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka----------~~~P~~iaWHp--~gai~ 314 (545)
T PF11768_consen 248 LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KA----------EFIPTLIAWHP--DGAIF 314 (545)
T ss_pred eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-ee----------cccceEEEEcC--CCcEE
Confidence 3355566666788999999999999999999999999999876644332 11 12356889999 56699
Q ss_pred EEEeCCCeEEEEeCCC
Q 020454 231 VAGTNDHQVRLYDTSA 246 (326)
Q Consensus 231 ~~~~~dg~v~iwd~~~ 246 (326)
++|+..|.+.+||+.-
T Consensus 315 ~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 315 VVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEcCCceEEEEEeec
Confidence 9999999999999763
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00018 Score=64.04 Aligned_cols=174 Identities=13% Similarity=0.148 Sum_probs=109.5
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
+..|+.|..+|.|++++.. +.....+.. ... . . .+.++++|+.||++.|..+....
T Consensus 49 ~~~~~~GtH~g~v~~~~~~-~~~~~~~~~---------s~~----~--~--------~Gey~asCS~DGkv~I~sl~~~~ 104 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQ-GNPKTNFDH---------SSS----I--L--------EGEYVASCSDDGKVVIGSLFTDD 104 (846)
T ss_pred cceeeeccccceEEEEecC-Ccccccccc---------ccc----c--c--------CCceEEEecCCCcEEEeeccCCc
Confidence 3469999999999999884 333111111 011 1 1 56799999999999998865433
Q ss_pred cccccccceEEEEEccCCCceEEEEEcCC-----CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454 145 VSAESSCSTVKSWNVCASGTIAFSKVDIS-----EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (326)
....++. +.++.+++++|+ .+.+++||.-| +.++.-+=-...... ..-...+.|.++
T Consensus 105 --------~~~~~df--~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-------~l~~~eG~I~~i 166 (846)
T KOG2066|consen 105 --------EITQYDF--KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-------VLSEGEGPIHSI 166 (846)
T ss_pred --------cceeEec--CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-------eeecCccceEEE
Confidence 2333333 468999999997 37888999988 777653211100000 011123679999
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC------ceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET------PIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
.|. |+++|=++.+| |++||+.+. +.+..++.... .-..+.|.++ ..|+.|-.| +|+|..++
T Consensus 167 ~W~----g~lIAWand~G-v~vyd~~~~-~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 167 KWR----GNLIAWANDDG-VKVYDTPTR-QRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD-SVKICSIK 233 (846)
T ss_pred Eec----CcEEEEecCCC-cEEEecccc-ceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC-eEEEEEEe
Confidence 995 44777777666 799998865 33444433222 2245667644 466666555 88888887
No 318
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.00018 Score=58.98 Aligned_cols=242 Identities=12% Similarity=0.008 Sum_probs=130.0
Q ss_pred eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce-eeeecccC
Q 020454 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-RVAISNAG 95 (326)
Q Consensus 17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-~~~~~~~~ 95 (326)
+..++.+..|+|.|+++. ..+..+..+ ..+..+||+-+. ..++..|..+|.|.|||+...+- +.++..
T Consensus 209 l~~asl~nkiki~dlet~-----~~vssy~a~---~~~wSC~wDlde-~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a-- 277 (463)
T KOG1645|consen 209 LGLASLGNKIKIMDLETS-----CVVSSYIAY---NQIWSCCWDLDE-RHVIYAGLQNGMVLVYDMRQPEGPLMELVA-- 277 (463)
T ss_pred eeeeccCceEEEEecccc-----eeeeheecc---CCceeeeeccCC-cceeEEeccCceEEEEEccCCCchHhhhhh--
Confidence 677788889999999987 555555433 556677887554 66899999999999999974431 122211
Q ss_pred CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC
Q 020454 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (326)
Q Consensus 96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (326)
+....+|..++....+ ...+.+.++++..-+ +..|.+. ++.+....+..+...+.+.++..++..+
T Consensus 278 ----~~t~~pv~~i~~~~~n---~~f~~gglLv~~lt~-l~f~ei~------~s~~~~p~vlele~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 278 ----NVTINPVHKIAPVQPN---KIFTSGGLLVFALTV-LQFYEIV------FSAECLPCVLELEPPGICISMQYHGVSN 343 (463)
T ss_pred ----hhccCcceeecccCcc---ccccccceEEeeehh-hhhhhhh------ccccCCCcccccCCCcceeeeeecCccc
Confidence 1223566655544422 111233444444333 3456543 2333344455555567777888887554
Q ss_pred -EEEEecCCC------eEEE-EECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454 176 -FSLFGGKGV------EVNV-WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (326)
Q Consensus 176 -~l~sg~~d~------~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~ 247 (326)
.|++.-.+. .|.. -|...+.++...+....... ..+-.-+..-+.+.++...+.++...+.+.+||+.+.
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~--~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSK--QTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCc--ccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 444432221 1111 12223333333221110000 0000001112333333333445566779999999987
Q ss_pred CCceeEEeecCCceEEEEecC-C-CCeEEEEcCCCcEEEEECC
Q 020454 248 RRPVMSFDFRETPIKAVAEEP-D-SFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 248 ~~~~~~~~~~~~~i~~v~~s~-~-~~~l~~g~~dg~v~iwd~~ 288 (326)
..++.+... .+|.+++... + +.+|++-. |..++||..+
T Consensus 422 -evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 422 -EVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred -heeeecccC-cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 557777655 7788877643 2 44666544 4478887654
No 319
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=6.6e-06 Score=68.02 Aligned_cols=189 Identities=13% Similarity=0.028 Sum_probs=125.8
Q ss_pred CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC-CCeEEEEECCCceeeeee
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTA 200 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~ 200 (326)
..+.+++++.||.++.|.-..-. ...-++.+ ..+...|.+++.+.++.++.+.+. |..++++|+++-..+.-.
T Consensus 19 ka~fiiqASlDGh~KFWkKs~is-----GvEfVKhF-raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminmi 92 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRIS-----GVEFVKHF-RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMI 92 (558)
T ss_pred hhheEEeeecchhhhhcCCCCcc-----ceeehhhh-HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhc
Confidence 34689999999999999733211 11122222 234557888899999999999777 999999999875544332
Q ss_pred cCCCCCCCCcCCCCceeeeEEeecCCCcEEEE-EeCCCeEEEEeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcC
Q 020454 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (326)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~-~~~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~ 278 (326)
+.... |..+ ....+|.+.-..+++ .-.++.+.++|-+... +.......|..+|..+.+.+-+..+++...
T Consensus 93 KL~~l-------Pg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 93 KLVDL-------PGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccccC-------CCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 22110 1100 111222211113333 3468899999987553 334455578999999999999999999999
Q ss_pred CCcEEEEECCC------CeE---------EEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 279 SGDLASVDIRT------GKL---------LGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 279 dg~v~iwd~~~------~~~---------~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.|.|.-|.... .++ ++.+.. +.....++.|+|++..+.+-+.|..+
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K-~Kt~pts~Efsp~g~qistl~~DrkV 225 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK-AKTEPTSFEFSPDGAQISTLNPDRKV 225 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccc-cccCccceEEccccCcccccCcccEE
Confidence 99999998872 111 222332 25668899999999999998888754
No 320
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.25 E-value=0.00023 Score=57.46 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=105.3
Q ss_pred ceEEEEEcCC-CCEEEEecCCCe-EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE-----eCC
Q 020454 164 TIAFSKVDIS-EKFSLFGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-----TND 236 (326)
Q Consensus 164 ~v~~~~~~~~-~~~l~sg~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~-----~~d 236 (326)
....++.+|. ...++.+-.-|+ ..+||.++++....+....... .--...|+| +|++|++. +..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH-------FyGHg~fs~--dG~~LytTEnd~~~g~ 76 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH-------FYGHGVFSP--DGRLLYTTENDYETGR 76 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE-------EecCEEEcC--CCCEEEEeccccCCCc
Confidence 4456778884 567777776665 7789999998776654422111 112346777 67788776 346
Q ss_pred CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEE------------------cCCCcEEEEECCCCeEEEEEcc
Q 020454 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG------------------NGSGDLASVDIRTGKLLGCFIG 298 (326)
Q Consensus 237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g------------------~~dg~v~iwd~~~~~~~~~~~~ 298 (326)
|.|-|||.....+.+.++..+.-.-..+.+.|||+.|+++ +.+-++.+.|..+|+++.+..-
T Consensus 77 G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 77 GVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred EEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence 7999999994445677787766666778899999877765 3334677788889998877432
Q ss_pred ---eecceEEEEEECCCCCEEEEeccCc
Q 020454 299 ---KCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 299 ---~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
++..+|+.|++.+++..++..=..|
T Consensus 157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg 184 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDGTVAFAMQYQG 184 (305)
T ss_pred CccccccceeeEEecCCCcEEEEEecCC
Confidence 2378999999999998776654444
No 321
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.22 E-value=0.0015 Score=51.89 Aligned_cols=210 Identities=10% Similarity=0.081 Sum_probs=110.8
Q ss_pred CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (326)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~ 128 (326)
.-...+.++.+.++ .+.++++....+.|..++. +|+++..+.. .+.+-.-++++.. + +.++.
T Consensus 19 g~~~e~SGLTy~pd-~~tLfaV~d~~~~i~els~-~G~vlr~i~l-------~g~~D~EgI~y~g--------~-~~~vl 80 (248)
T PF06977_consen 19 GILDELSGLTYNPD-TGTLFAVQDEPGEIYELSL-DGKVLRRIPL-------DGFGDYEGITYLG--------N-GRYVL 80 (248)
T ss_dssp T--S-EEEEEEETT-TTEEEEEETTTTEEEEEET-T--EEEEEE--------SS-SSEEEEEE-S--------T-TEEEE
T ss_pred CccCCccccEEcCC-CCeEEEEECCCCEEEEEcC-CCCEEEEEeC-------CCCCCceeEEEEC--------C-CEEEE
Confidence 33344667777643 2347778888899988887 6888887775 2234566677644 3 34444
Q ss_pred Ee-cCCcEEEEEccccccccccccceEEEEEc----cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC---ceeeeee
Q 020454 129 CT-TKGKASMRSIEVTKVSAESSCSTVKSWNV----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK---CEKIWTA 200 (326)
Q Consensus 129 ~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~---~~~~~~~ 200 (326)
.. .++.+.+.++........ ...+..+.+ ..+..+..++|++.++.|+.+-+.....||.+.. ...+...
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~--~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLD--RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT----EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccc--hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence 44 488898888854332111 111222322 2345699999999887776766666677777653 1111111
Q ss_pred --cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC---------CceEEEEecCC
Q 020454 201 --KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------TPIKAVAEEPD 269 (326)
Q Consensus 201 --~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------~~i~~v~~s~~ 269 (326)
.........+ ..+++++++|. .+++++....+..|..+|.. + +++..+.... .+.-.|+|.++
T Consensus 159 ~~~~~~~~~~~~---~d~S~l~~~p~-t~~lliLS~es~~l~~~d~~-G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~ 232 (248)
T PF06977_consen 159 DDQDLDDDKLFV---RDLSGLSYDPR-TGHLLILSDESRLLLELDRQ-G-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPD 232 (248)
T ss_dssp E-HHHH-HT--S---S---EEEEETT-TTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT
T ss_pred ccccccccccee---ccccceEEcCC-CCeEEEEECCCCeEEEECCC-C-CEEEEEEeCCcccCcccccCCccEEEECCC
Confidence 1111011111 34678999986 56688888889999999954 4 4555554332 25788999999
Q ss_pred CCeEEEEcCCCcEEEE
Q 020454 270 SFNIYIGNGSGDLASV 285 (326)
Q Consensus 270 ~~~l~~g~~dg~v~iw 285 (326)
|+..++ ++-+.+++|
T Consensus 233 G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 233 GNLYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEEE-ETTTEEEEE
T ss_pred CCEEEE-cCCceEEEe
Confidence 865555 566566655
No 322
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=8e-06 Score=70.40 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=79.2
Q ss_pred CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceE-EEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK-AVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (326)
Q Consensus 213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~-~v~~s~~~~~l~~g~~dg~v~iwd~~~~~ 291 (326)
+..+.-+.|+|.-+ ++|.++.+|.|.++.+. . +.+.++..+...++ +++|.|||+.|++|-.||+|++.|+.++.
T Consensus 20 ~~~i~~~ewnP~~d--LiA~~t~~gelli~R~n-~-qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD--LIATRTEKGELLIHRLN-W-QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccc--hhheeccCCcEEEEEec-c-ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 45677889999655 99999999999999998 4 45888887777777 99999999999999999999999999998
Q ss_pred EEEEEcceecceEEEEEECC
Q 020454 292 LLGCFIGKCSGSIRSIARHP 311 (326)
Q Consensus 292 ~~~~~~~~~~~~v~~l~~~p 311 (326)
.+..+..-....|.++-|.|
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 88773321367888888864
No 323
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.21 E-value=0.0027 Score=54.93 Aligned_cols=209 Identities=17% Similarity=0.101 Sum_probs=107.8
Q ss_pred cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEE
Q 020454 76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVK 155 (326)
Q Consensus 76 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~ 155 (326)
.|+||+. .|+.+..+.. .. +.+.++.|.. +..|+....||.++++++......+ -...+.
T Consensus 62 ~I~iys~-sG~ll~~i~w-------~~-~~iv~~~wt~---------~e~LvvV~~dG~v~vy~~~G~~~fs--l~~~i~ 121 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPW-------DS-GRIVGMGWTD---------DEELVVVQSDGTVRVYDLFGEFQFS--LGEEIE 121 (410)
T ss_pred EEEEECC-CCCEeEEEEE-------CC-CCEEEEEECC---------CCeEEEEEcCCEEEEEeCCCceeec--hhhhcc
Confidence 5999998 6777777654 22 6888899744 5678999999999999975322000 000111
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEecCCCeEEEE-ECCCceeeeeecCCCCCCCCcCCCCceee-eEEeecCCCcEEEEE
Q 020454 156 SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVW-DLDKCEKIWTAKPPPKNSLGIFTPTWFTS-AAFLSIDDHRKFVAG 233 (326)
Q Consensus 156 ~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~~l~~~ 233 (326)
...+. ...+....+..+|-.++++ ++.+.+. +.............+.............. ..+.. +....+..
T Consensus 122 ~~~v~-e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~--~~~~~i~~ 196 (410)
T PF04841_consen 122 EEKVL-ECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS--DRVVEILL 196 (410)
T ss_pred ccCcc-cccccccccCCCCEEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccceEeec--CcceEEEE
Confidence 00000 1112223333345444442 3333332 22211111111111111100000011111 12222 23344444
Q ss_pred eCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454 234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (326)
Q Consensus 234 ~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~ 313 (326)
..++.+.+.+-... .. +. ..+++..++.||++++||.-..+|.+.+.+..-.+.+..+..........+.|+-+.
T Consensus 197 ~~g~~i~~i~~~~~-~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 197 ANGETIYIIDENSF-KQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ecCCEEEEEEcccc-cc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 55566665553322 11 21 246899999999999999989999999998766666665553224566677776544
Q ss_pred C
Q 020454 314 P 314 (326)
Q Consensus 314 ~ 314 (326)
.
T Consensus 272 a 272 (410)
T PF04841_consen 272 A 272 (410)
T ss_pred c
Confidence 3
No 324
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.19 E-value=0.0014 Score=54.84 Aligned_cols=224 Identities=15% Similarity=0.174 Sum_probs=120.6
Q ss_pred CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec----------CCcEEEEEccccc
Q 020454 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT----------KGKASMRSIEVTK 144 (326)
Q Consensus 75 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~----------~g~v~i~~~~~~~ 144 (326)
..|+++|..+.+.+..+.. .....+.++..+.-.. .......++++|+. .|.+.++++...
T Consensus 2 s~i~l~d~~~~~~~~~~~l-------~~~E~~~s~~~~~l~~-~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~- 72 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFEL-------EPNEHVTSLCSVKLKG-DSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES- 72 (321)
T ss_dssp -EEEEEETTTSSEEEEEEE-------ETTEEEEEEEEEEETT-S---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-
T ss_pred cEEEEEeCCCCeEEEEEEC-------CCCceEEEEEEEEEcC-ccccccCEEEEEecccccccccccCcEEEEEEEEcc-
Confidence 3577888777666665554 1223344444332110 00001356666653 288999998763
Q ss_pred cccccccceE-EEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454 145 VSAESSCSTV-KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (326)
Q Consensus 145 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (326)
......+ .+......++|+++..- ++.++++ .++.|.+|++...+ ........ .+..++++...
T Consensus 73 ---~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~--~g~~l~v~~l~~~~~l~~~~~~~--------~~~~i~sl~~~ 138 (321)
T PF03178_consen 73 ---PENNFKLKLIHSTEVKGPVTAICSF-NGRLVVA--VGNKLYVYDLDNSKTLLKKAFYD--------SPFYITSLSVF 138 (321)
T ss_dssp --------EEEEEEEEEESS-EEEEEEE-TTEEEEE--ETTEEEEEEEETTSSEEEEEEE---------BSSSEEEEEEE
T ss_pred ---cccceEEEEEEEEeecCcceEhhhh-CCEEEEe--ecCEEEEEEccCcccchhhheec--------ceEEEEEEecc
Confidence 1111122 22333346789988877 4444433 34799999998777 33332211 11246666554
Q ss_pred ecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE--eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC-------C--e
Q 020454 223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-------G--K 291 (326)
Q Consensus 223 p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~-------~--~ 291 (326)
++++++|...+.+.++..+.....+..+ ......++++.+-++++.+++++.+|.+.++.... + +
T Consensus 139 ----~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~ 214 (321)
T PF03178_consen 139 ----KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPK 214 (321)
T ss_dssp ----TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTB
T ss_pred ----ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccccccc
Confidence 2388999888888877544321212222 23445688888876767999999999999998763 2 3
Q ss_pred EEEEEcceecceEEEE---EECCC--C------CEEEEeccCccC
Q 020454 292 LLGCFIGKCSGSIRSI---ARHPT--L------PIIASCGFLEAA 325 (326)
Q Consensus 292 ~~~~~~~~~~~~v~~l---~~~p~--~------~~l~s~s~D~~~ 325 (326)
+.....-|....|+++ .+.|. + +.++-++.+|.+
T Consensus 215 L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~I 259 (321)
T PF03178_consen 215 LERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSI 259 (321)
T ss_dssp EEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-E
T ss_pred ceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEE
Confidence 3333333446678888 55552 2 136667777753
No 325
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.17 E-value=0.0023 Score=51.82 Aligned_cols=219 Identities=17% Similarity=0.110 Sum_probs=118.3
Q ss_pred eEEEEecCCc-EEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-----ecCCcEEEEEc
Q 020454 67 LLAVARKNGL-TDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-----TTKGKASMRSI 140 (326)
Q Consensus 67 ~l~~g~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-----~~~g~v~i~~~ 140 (326)
.++.+..-|+ ..+||..+++....+.. .....+.+-..|.. ++..|++. ...|.|-+||.
T Consensus 19 avafaRRPG~~~~v~D~~~g~~~~~~~a-------~~gRHFyGHg~fs~-------dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTGQLLQRLWA-------PPGRHFYGHGVFSP-------DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCCceeeEEcC-------CCCCEEecCEEEcC-------CCCEEEEeccccCCCcEEEEEEEC
Confidence 4666777665 67889998888776653 22233444444441 33444443 23477888886
Q ss_pred cccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec------------------CCCeEEEEECCCceeeeeecC
Q 020454 141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG------------------KGVEVNVWDLDKCEKIWTAKP 202 (326)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~------------------~d~~i~iwd~~~~~~~~~~~~ 202 (326)
...- ..+..|... .-.-..+.+.|+++.|+++. .+-.+..-|..+++.+.+..-
T Consensus 85 ~~~~-------~ri~E~~s~-GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 85 ARGY-------RRIGEFPSH-GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred cCCc-------EEEeEecCC-CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence 6211 133344422 22344566788886666542 112233333333443333211
Q ss_pred CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-------eEEEEeCCCCCCceeEEe-------ecCCceEEEEecC
Q 020454 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-------QVRLYDTSAQRRPVMSFD-------FRETPIKAVAEEP 268 (326)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-------~v~iwd~~~~~~~~~~~~-------~~~~~i~~v~~s~ 268 (326)
.... +...+..+++.+ ++..++..-..| -|-+++... ++..+. .-...+-+|++++
T Consensus 157 p~~~-----~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~ 226 (305)
T PF07433_consen 157 PPDL-----HQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADR 226 (305)
T ss_pred Cccc-----cccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeC
Confidence 0000 112455666654 342333222222 122222221 111111 2235789999999
Q ss_pred CCCeEEEEc-CCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454 269 DSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 269 ~~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
++.++++.+ ..|.+.+||..+++.+....-. .+..++-.+++ +++|.|.
T Consensus 227 ~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 227 DGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred CCCEEEEECCCCCEEEEEECCCCCEeeccccC---ceeeeeecCCc-eEEeCCC
Confidence 999887655 5678999999999998877633 67778777766 7776654
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00027 Score=63.46 Aligned_cols=182 Identities=13% Similarity=0.167 Sum_probs=111.0
Q ss_pred CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCC-----eEEEEECCCce-
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCE- 195 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~-----~i~iwd~~~~~- 195 (326)
..+.++.++.+|.|.+++-... .++-|......-|..+....+.++|++-+.|. .++|||++..+
T Consensus 34 ~~~~vvigt~~G~V~~Ln~s~~---------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILNSSFQ---------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred CCceEEEeeccccEEEecccce---------eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 5678999999999988873321 22444444333344554444457887776664 48999997532
Q ss_pred -----eee--eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeC---CCCCCceeEEeecCCceEEEE
Q 020454 196 -----KIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT---SAQRRPVMSFDFRETPIKAVA 265 (326)
Q Consensus 196 -----~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~---~~~~~~~~~~~~~~~~i~~v~ 265 (326)
++. ....+... ..+.+++.++.+. +-+.+|.|-.+|.|..+.- |.......-......+|+.++
T Consensus 105 n~sP~c~~~~ri~~~~np----~~~~p~s~l~Vs~--~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNP----TNPSPASSLAVSE--DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred CCCcceeeeeeeeccCCC----CCCCcceEEEEEc--cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 121 11111111 1234567777775 3458899999999999962 211111111223467999999
Q ss_pred ecCCCCeEEEEcCCCcEEEEECCCCeE-EEEEcceecceEEEEEECCCCC-EEEEe
Q 020454 266 EEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLP-IIASC 319 (326)
Q Consensus 266 ~s~~~~~l~~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~~p~~~-~l~s~ 319 (326)
+..++..++-......|.+|.+....+ +..+..| ..+++|-.+++... +++++
T Consensus 179 ~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~ 233 (933)
T KOG2114|consen 179 LRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAG 233 (933)
T ss_pred EecCCceeEEEEecceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEec
Confidence 998887733223334799999984443 3335655 88999999997665 44444
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.16 E-value=9e-07 Score=76.18 Aligned_cols=192 Identities=14% Similarity=0.088 Sum_probs=116.2
Q ss_pred CCCeEEEEecCCcEEEEecccccee-eeecccCCCCCCCCCCCeeeeecccccccccCCCC-ceEEEEe----cCCcEEE
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS-RTLLTCT----TKGKASM 137 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~-~~l~~~~----~~g~v~i 137 (326)
+..++++|..+|.|.+-........ .++. .++..+..++++.+ -+ +.|+++- .+-.+.|
T Consensus 69 d~cIlavG~atG~I~l~s~r~~hdSs~E~t-------p~~ar~Ct~lAwne--------LDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 69 DRCILAVGSATGNISLLSVRHPHDSSAEVT-------PGYARPCTSLAWNE--------LDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred chhhhhhccccCceEEeecCCcccccceec-------cccccccccccccc--------ccHHHHHhhhhhhcccCCccc
Confidence 3568999999999999887644332 1111 13445667777644 22 3344442 3456789
Q ss_pred EEccccccccccccceEEEEEcc--CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCC
Q 020454 138 RSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPT 214 (326)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 214 (326)
||+...-.. +...|... ......++.|..+.+++.+|.....+.++|++... ....+.. .
T Consensus 134 wdi~s~ltv------Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT-----------k 196 (783)
T KOG1008|consen 134 WDINSLLTV------PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT-----------K 196 (783)
T ss_pred eecccccCC------CccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh-----------h
Confidence 998765211 11111111 12344577777778899999999999999998322 1111111 2
Q ss_pred ceeeeEEeecCCCcEEEEEeCCCeEEEEe-CCCCCCceeEEeecCC----ceEEEEecCCCC-eEEEE-cCCCcEEEEEC
Q 020454 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYD-TSAQRRPVMSFDFRET----PIKAVAEEPDSF-NIYIG-NGSGDLASVDI 287 (326)
Q Consensus 215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd-~~~~~~~~~~~~~~~~----~i~~v~~s~~~~-~l~~g-~~dg~v~iwd~ 287 (326)
.+.++...|- .++++++-. ||.|-+|| .+..+.++..+...+. .+..++|+|... .+++. -..++|+++|+
T Consensus 197 ~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 197 YVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred hcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 3445566663 233666665 99999999 6655556555543333 489999999733 33443 45578999998
Q ss_pred CC
Q 020454 288 RT 289 (326)
Q Consensus 288 ~~ 289 (326)
..
T Consensus 275 ~~ 276 (783)
T KOG1008|consen 275 CV 276 (783)
T ss_pred cc
Confidence 73
No 328
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.0012 Score=57.14 Aligned_cols=141 Identities=12% Similarity=0.037 Sum_probs=87.8
Q ss_pred ceEEEEEcCCCCE-EEEecC---CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE-EEEeCC--
Q 020454 164 TIAFSKVDISEKF-SLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTND-- 236 (326)
Q Consensus 164 ~v~~~~~~~~~~~-l~sg~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-~~~~~d-- 236 (326)
....-.|+|+++. ++..+. +..|.++|+.+++....... . .......|+| +++.+ ++.+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~---------g~~~~~~~SP--DG~~la~~~~~~g~ 256 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-Q---------GMLVVSDVSK--DGSKLLLTMAPKGQ 256 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-C---------CcEEeeEECC--CCCEEEEEEccCCC
Confidence 6778999999973 554333 35699999988765443221 1 2234567888 45444 444433
Q ss_pred CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCC--cEEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (326)
Q Consensus 237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~ 313 (326)
..|.++|+..+ . ...+..+........|+|||+.|+-.+ ..| .|++.|+.+++........ . ....|+|++
T Consensus 257 ~~Iy~~dl~~g-~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~---~~~~~SPDG 330 (419)
T PRK04043 257 PDIYLYDTNTK-T-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K---NNSSVSTYK 330 (419)
T ss_pred cEEEEEECCCC-c-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C---cCceECCCC
Confidence 57888888765 3 344444433334558999998887444 334 5888888887764332211 1 124899999
Q ss_pred CEEEEeccC
Q 020454 314 PIIASCGFL 322 (326)
Q Consensus 314 ~~l~s~s~D 322 (326)
+.|+-.+..
T Consensus 331 ~~Ia~~~~~ 339 (419)
T PRK04043 331 NYIVYSSRE 339 (419)
T ss_pred CEEEEEEcC
Confidence 988777654
No 329
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.10 E-value=0.0026 Score=49.59 Aligned_cols=187 Identities=16% Similarity=0.149 Sum_probs=111.0
Q ss_pred CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc
Q 020454 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (326)
Q Consensus 66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~ 145 (326)
.+++.|+..+.+.-.|..+|+.+.+... . .+|.+-+.. -+++++.+..+|.+++.+.+...
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-------g--~RiE~sa~v---------vgdfVV~GCy~g~lYfl~~~tGs- 84 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-------G--VRIECSAIV---------VGDFVVLGCYSGGLYFLCVKTGS- 84 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-------C--ceeeeeeEE---------ECCEEEEEEccCcEEEEEecchh-
Confidence 4789999999999999999987665432 1 233322221 24679999999999999876532
Q ss_pred ccccccceEEEEEccCCCceE-EEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454 146 SAESSCSTVKSWNVCASGTIA-FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (326)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 224 (326)
++|+....+.|- .....+++.++..|+.|++.+..|.++...+++.+-..... .+-+..|.
T Consensus 85 ---------~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f---------~sP~i~~g 146 (354)
T KOG4649|consen 85 ---------QIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTF---------VSPVIAPG 146 (354)
T ss_pred ---------heeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCcee---------ccceecCC
Confidence 234432223332 23456789999999999999999999999998865433211 11233332
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCCCceeEEee--cCCceEEEEecC--CCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEP--DSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 225 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~~i~~v~~s~--~~~~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
++ .|..+...|.|.--..... +..++-. ...+|.+ +| -+..+..+.-||.+.-+| ..|+.+.++.
T Consensus 147 -~~-sly~a~t~G~vlavt~~~~--~~~~~w~~~~~~PiF~---splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 147 -DG-SLYAAITAGAVLAVTKNPY--SSTEFWAATRFGPIFA---SPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred -Cc-eEEEEeccceEEEEccCCC--CcceehhhhcCCcccc---CceeccceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 33 3444444555544443332 1112111 1223322 11 145666667777777777 5566665554
No 330
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.08 E-value=0.0043 Score=51.98 Aligned_cols=183 Identities=17% Similarity=0.243 Sum_probs=107.0
Q ss_pred CCeEEEEec---------C-CcEEEEecccc-----ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454 65 DPLLAVARK---------N-GLTDILNPLNG-----DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (326)
Q Consensus 65 ~~~l~~g~~---------d-g~i~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~ 129 (326)
.+++++|.. . |.|.+|++.+. ++ ..+... ...++|.++..+. ++ +.+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l-~~i~~~------~~~g~V~ai~~~~----------~~-lv~ 103 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL-KLIHST------EVKGPVTAICSFN----------GR-LVV 103 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE-EEEEEE------EESS-EEEEEEET----------TE-EEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEE-EEEEEE------eecCcceEhhhhC----------CE-EEE
Confidence 567888765 2 99999999774 32 222221 2347899888754 45 555
Q ss_pred ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC--ceeeeeecCCCCCC
Q 020454 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--CEKIWTAKPPPKNS 207 (326)
Q Consensus 130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~--~~~~~~~~~~~~~~ 207 (326)
+.++.+.+|++.... .-.....++. ...+.++... ++++++|..-..+.++..+. .+.....+..
T Consensus 104 ~~g~~l~v~~l~~~~-----~l~~~~~~~~--~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~---- 170 (321)
T PF03178_consen 104 AVGNKLYVYDLDNSK-----TLLKKAFYDS--PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDY---- 170 (321)
T ss_dssp EETTEEEEEEEETTS-----SEEEEEEE-B--SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEES----
T ss_pred eecCEEEEEEccCcc-----cchhhheecc--eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecC----
Confidence 556899999988654 0112233332 3356666665 56999998888888775443 2222222211
Q ss_pred CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC------CC-c---eeEEeecCCceEEE---EecCC--CC-
Q 020454 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ------RR-P---VMSFDFRETPIKAV---AEEPD--SF- 271 (326)
Q Consensus 208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~------~~-~---~~~~~~~~~~i~~v---~~s~~--~~- 271 (326)
.+.+++++.|.++. +.++.+..+|.+.++..... .. . ...+. ....|+++ ++.|. +.
T Consensus 171 ----~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~ 243 (321)
T PF03178_consen 171 ----QPRWVTAAEFLVDE--DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSE 243 (321)
T ss_dssp ----S-BEEEEEEEE-SS--SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-
T ss_pred ----CCccEEEEEEecCC--cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCc
Confidence 24679999998743 38999999999999876521 11 1 12222 23567777 55552 22
Q ss_pred -----eEEEEcCCCcEEEE
Q 020454 272 -----NIYIGNGSGDLASV 285 (326)
Q Consensus 272 -----~l~~g~~dg~v~iw 285 (326)
.++.++.+|.|.+.
T Consensus 244 ~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 244 SPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTEEEEEEEEETTS-EEEE
T ss_pred ccccceEEEEecCCEEEEE
Confidence 47788899998844
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=4.9e-05 Score=62.17 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=65.2
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCC
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~ 290 (326)
+...|.+++|+|..+| ++..++.+.+|+|.|+++. ..+.++..+ ..+.+++|+-| .++|++|..+|.|.|||++..
T Consensus 192 ~g~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~-~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETS-CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred cchhhhhhccCccccc-eeeeeccCceEEEEecccc-eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 4457899999998766 8899999999999999986 556777677 78899999977 567889999999999999975
Q ss_pred e
Q 020454 291 K 291 (326)
Q Consensus 291 ~ 291 (326)
+
T Consensus 269 ~ 269 (463)
T KOG1645|consen 269 E 269 (463)
T ss_pred C
Confidence 3
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.04 E-value=0.0015 Score=55.91 Aligned_cols=253 Identities=10% Similarity=0.014 Sum_probs=120.6
Q ss_pred EEEEEeeeCCCCCeEEEEecCCcEEEEeccccceee------e-------------------ecccCCCC----------
Q 020454 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV------A-------------------ISNAGDSG---------- 98 (326)
Q Consensus 54 ~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~------~-------------------~~~~~~~~---------- 98 (326)
+..++++..+. -|++|..+|.|.||.....+.-. . +..-.++.
T Consensus 4 v~~vs~a~~t~--Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 4 VTHVSFAPETL--ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp EEEEEEETTTT--EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred EEEEEecCCCc--eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 44566665544 49999999999999775332211 0 00000000
Q ss_pred CCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-----C
Q 020454 99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----S 173 (326)
Q Consensus 99 ~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~ 173 (326)
.+...++|.++.. ++-+++++++++|.+.+.|++.....-...-.. ..........+.++.|.. +
T Consensus 82 ~~~~~g~vtal~~---------S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 82 LDAKQGPVTALKN---------SDIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp E---S-SEEEEEE----------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTS
T ss_pred eeccCCcEeEEec---------CCCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCC
Confidence 0233567776664 256799999999999999986533110000000 000011123466666652 3
Q ss_pred C---CEEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecC-------------------CCcEE
Q 020454 174 E---KFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-------------------DHRKF 230 (326)
Q Consensus 174 ~---~~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-------------------~~~~l 230 (326)
+ -.+++|...|.+.+|.+.- ..-.+........ ......|..+...-.+ .-.-+
T Consensus 152 ~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~---~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 152 GYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT---TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp SSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE-----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred cccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc---ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 3 4778899999999998752 1111111000000 0001112222211000 00123
Q ss_pred EEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEec-----CCCCeEEEEcCCCcEEEEECCCCeEEEEEccee---cc
Q 020454 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE-----PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC---SG 302 (326)
Q Consensus 231 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s-----~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~---~~ 302 (326)
+....+..+|++.+.+.+. .++..........+++- ..+..|++-..+|.+++|.+...+.+..++-+. ..
T Consensus 229 vVvvSe~~irv~~~~~~k~-~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKSKG-AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR 307 (395)
T ss_dssp EEEE-SSEEEEE-TT---E-EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred EEEEcccceEEEeCCCCcc-cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence 4444578899999887633 33322111223333442 356778888999999999999988887766420 23
Q ss_pred eEEEEEECCCCCEEEEeccC
Q 020454 303 SIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 303 ~v~~l~~~p~~~~l~s~s~D 322 (326)
.+....++++|.+++-.|..
T Consensus 308 ~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SSS
T ss_pred cccccEECCCCCEEEEeCcc
Confidence 45567778888877766543
No 333
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.04 E-value=0.0034 Score=49.91 Aligned_cols=191 Identities=13% Similarity=0.148 Sum_probs=102.2
Q ss_pred CCeeeeecccccccccCCCCceEEE-EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC
Q 020454 104 DGIVGLHLFKRQREESSSRSRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK 182 (326)
Q Consensus 104 ~~i~~l~~~~~~~~~~~~~~~~l~~-~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~ 182 (326)
..+.++++.+ +.+.|++ ..+.+.|..++.+ . ..++.+.+........+++..++.++++.-.
T Consensus 22 ~e~SGLTy~p--------d~~tLfaV~d~~~~i~els~~--G-------~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er 84 (248)
T PF06977_consen 22 DELSGLTYNP--------DTGTLFAVQDEPGEIYELSLD--G-------KVLRRIPLDGFGDYEGITYLGNGRYVLSEER 84 (248)
T ss_dssp S-EEEEEEET--------TTTEEEEEETTTTEEEEEETT-----------EEEEEE-SS-SSEEEEEE-STTEEEEEETT
T ss_pred CCccccEEcC--------CCCeEEEEECCCCEEEEEcCC--C-------CEEEEEeCCCCCCceeEEEECCCEEEEEEcC
Confidence 4589999765 4455544 4455665555532 1 2566777766678889999888888887767
Q ss_pred CCeEEEEECCCcee------eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC--CCCceeEE
Q 020454 183 GVEVNVWDLDKCEK------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRRPVMSF 254 (326)
Q Consensus 183 d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~ 254 (326)
++.+.++++..... ...+.-... ......+-+++|.|.. + .|+++-...-..+|.++. ....+...
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~----~~~N~G~EGla~D~~~-~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGFP----NKGNKGFEGLAYDPKT-N-RLFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE---S-------SS--EEEEEETTT-T-EEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred CCcEEEEEEeccccccchhhceEEecccc----cCCCcceEEEEEcCCC-C-EEEEEeCCCChhhEEEccccCccceeec
Confidence 89999999843211 111110000 0011346789999853 3 555555555566666553 11111111
Q ss_pred e--------ecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEcceec---------ceEEEEEECCCCCEE
Q 020454 255 D--------FRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS---------GSIRSIARHPTLPII 316 (326)
Q Consensus 255 ~--------~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~---------~~v~~l~~~p~~~~l 316 (326)
. .....+.+++++|. +++++.+..+..|..+| .+|+++..+.-. . ..-..|+|.++|.+.
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~-~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLD-RGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-S-TTGGG-SS---SEEEEEE-TT--EE
T ss_pred cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeC-CcccCcccccCCccEEEECCCCCEE
Confidence 1 22346788999997 55666778888999999 678877655421 1 246789999999766
Q ss_pred EEe
Q 020454 317 ASC 319 (326)
Q Consensus 317 ~s~ 319 (326)
++.
T Consensus 237 Ivs 239 (248)
T PF06977_consen 237 IVS 239 (248)
T ss_dssp EEE
T ss_pred EEc
Confidence 654
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.03 E-value=0.00064 Score=63.50 Aligned_cols=196 Identities=14% Similarity=0.093 Sum_probs=119.1
Q ss_pred CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEe
Q 020454 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180 (326)
Q Consensus 101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 180 (326)
.+++.|.++.++. ..+.++.+...|.|.+-|....... .+= .-...|.+++|+|++.+++..
T Consensus 66 ~gd~~i~s~~fl~--------d~~~i~v~~~~G~iilvd~et~~~e--------ivg--~vd~GI~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 66 DGDDEIVSVQFLA--------DTNSICVITALGDIILVDPETLELE--------IVG--NVDNGISAASWSPDEELLALI 127 (1265)
T ss_pred CCCcceEEEEEec--------ccceEEEEecCCcEEEEccccccee--------eee--eccCceEEEeecCCCcEEEEE
Confidence 4457888898877 6678999999999998875543211 111 114679999999999999888
Q ss_pred cCCCeEEEEEC----CCceee-------------------eeecCCCC-----CC-------CCcCCCCceeeeEEeecC
Q 020454 181 GKGVEVNVWDL----DKCEKI-------------------WTAKPPPK-----NS-------LGIFTPTWFTSAAFLSID 225 (326)
Q Consensus 181 ~~d~~i~iwd~----~~~~~~-------------------~~~~~~~~-----~~-------~~~~~~~~v~~~~~~p~~ 225 (326)
+..+++.+-+- -..+++ ..+++... +. ........-++|.|- .
T Consensus 128 T~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR--g 205 (1265)
T KOG1920|consen 128 TGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR--G 205 (1265)
T ss_pred eCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc--c
Confidence 88777755322 112221 00110000 00 000011122346675 4
Q ss_pred CCcEEEE-----EeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEE---cCCCcEEEEECCC---CeEEE
Q 020454 226 DHRKFVA-----GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG---NGSGDLASVDIRT---GKLLG 294 (326)
Q Consensus 226 ~~~~l~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g---~~dg~v~iwd~~~---~~~~~ 294 (326)
+|.++|+ ....+.|++||.. + ..-..-....+.-.+++|-|.|..+++- ..|+.|.+|.-+. |+..-
T Consensus 206 Dg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l 283 (1265)
T KOG1920|consen 206 DGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVL 283 (1265)
T ss_pred CCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccccc
Confidence 7778887 3333799999977 3 2111222233445678999999998843 3456799998542 23333
Q ss_pred EEcceecceEEEEEECCCCCEEEEe
Q 020454 295 CFIGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 295 ~~~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
.++.. ..+|..|+|+.++.+||.-
T Consensus 284 ~~p~d-e~~ve~L~Wns~sdiLAv~ 307 (1265)
T KOG1920|consen 284 PFPLD-EKEVEELAWNSNSDILAVV 307 (1265)
T ss_pred CCccc-ccchheeeecCCCCceeee
Confidence 34443 5559999999999998873
No 335
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.01 E-value=0.0034 Score=51.53 Aligned_cols=207 Identities=16% Similarity=0.173 Sum_probs=115.0
Q ss_pred CCCCeEEEEec--CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEc
Q 020454 63 QNDPLLAVARK--NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (326)
Q Consensus 63 ~~~~~l~~g~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~ 140 (326)
.+++++++.-. --+|.|.|+..++++.++.. .... ..++. ....+.+-+.||.+.-..+
T Consensus 104 ~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~----------PGC~--~iyP~-------~~~~F~~lC~DGsl~~v~L 164 (342)
T PF06433_consen 104 ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT----------PGCW--LIYPS-------GNRGFSMLCGDGSLLTVTL 164 (342)
T ss_dssp TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG----------TSEE--EEEEE-------ETTEEEEEETTSCEEEEEE
T ss_pred cCCcEEEEEccCCCCeEEEEECCCCceeeeecC----------CCEE--EEEec-------CCCceEEEecCCceEEEEE
Confidence 34455555433 35688888888888877765 1122 22332 2346889999999999998
Q ss_pred cccccccccccceEEEEEccCCCceE-EEEEcCCCCEEEEecCCCeEEEEECCCceeeee--ecCCC----CCCCCcCCC
Q 020454 141 EVTKVSAESSCSTVKSWNVCASGTIA-FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT--AKPPP----KNSLGIFTP 213 (326)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~--~~~~~----~~~~~~~~~ 213 (326)
+...... ...-.+++... .++. .-.+...+..++--+.+|.|+--|+......+. ..-.. ...| .|
T Consensus 165 d~~Gk~~---~~~t~~F~~~~-dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~W---rP 237 (342)
T PF06433_consen 165 DADGKEA---QKSTKVFDPDD-DPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGW---RP 237 (342)
T ss_dssp TSTSSEE---EEEEEESSTTT-S-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTE---EE
T ss_pred CCCCCEe---EeeccccCCCC-cccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCc---CC
Confidence 8655433 11223454433 2333 333444444444457899999988876543222 11100 0000 12
Q ss_pred CceeeeEEeecCCCcEEEEEe--C-----CC--eEEEEeCCCCCCceeEEeecCCceEEEEecCCCC-eEEEE-cCCCcE
Q 020454 214 TWFTSAAFLSIDDHRKFVAGT--N-----DH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIG-NGSGDL 282 (326)
Q Consensus 214 ~~v~~~~~~p~~~~~~l~~~~--~-----dg--~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~g-~~dg~v 282 (326)
..-.-+++++. .+++++... . |+ .|-+||+.+. +.+..+... .++.+|+.+.+.+ +|++. ..++.+
T Consensus 238 GG~Q~~A~~~~-~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l 314 (342)
T PF06433_consen 238 GGWQLIAYHAA-SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-KRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTL 314 (342)
T ss_dssp -SSS-EEEETT-TTEEEEEEEE--TT-TTS-EEEEEEEETTTT-EEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEE
T ss_pred cceeeeeeccc-cCeEEEEecCCCCCCccCCceEEEEEECCCC-eEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeE
Confidence 22334566653 332332221 1 12 4667788877 456677653 5688999998865 55544 467899
Q ss_pred EEEECCCCeEEEEEcc
Q 020454 283 ASVDIRTGKLLGCFIG 298 (326)
Q Consensus 283 ~iwd~~~~~~~~~~~~ 298 (326)
.+||..+|+++.++..
T Consensus 315 ~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 315 DVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEETTT--EEEEE--
T ss_pred EEEeCcCCcEEeehhc
Confidence 9999999999988874
No 336
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.99 E-value=0.011 Score=52.97 Aligned_cols=60 Identities=17% Similarity=0.110 Sum_probs=38.7
Q ss_pred CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (326)
Q Consensus 237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 298 (326)
|.|.-+|+.++ +.+.+.+.......+. +.-.+..++.++.+|.++.+|.++|+.+.+++-
T Consensus 441 g~l~AiD~~tG-k~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITG-KIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCC-ceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 45677777776 3344443221111121 112456777889999999999999999988774
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.96 E-value=0.0096 Score=56.11 Aligned_cols=209 Identities=12% Similarity=0.081 Sum_probs=122.2
Q ss_pred ceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (326)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~ 131 (326)
..++++.+....+ -++++..+|.|.+-|.++... ..... -++.|.++.+.+ +...++..+.
T Consensus 69 ~~i~s~~fl~d~~--~i~v~~~~G~iilvd~et~~~-eivg~--------vd~GI~aaswS~--------Dee~l~liT~ 129 (1265)
T KOG1920|consen 69 DEIVSVQFLADTN--SICVITALGDIILVDPETLEL-EIVGN--------VDNGISAASWSP--------DEELLALITG 129 (1265)
T ss_pred cceEEEEEecccc--eEEEEecCCcEEEEcccccce-eeeee--------ccCceEEEeecC--------CCcEEEEEeC
Confidence 4666666654444 489999999999998876553 22221 125677777765 5667888888
Q ss_pred CCcEEEEEccccc----c-----------ccccccceEEEEEcc--------------------CCCceEEEEEcCCCCE
Q 020454 132 KGKASMRSIEVTK----V-----------SAESSCSTVKSWNVC--------------------ASGTIAFSKVDISEKF 176 (326)
Q Consensus 132 ~g~v~i~~~~~~~----~-----------~~~~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~ 176 (326)
.+++.+.+.+... . +...+...-.-++.. ....=..+.|--+|.+
T Consensus 130 ~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~ 209 (1265)
T KOG1920|consen 130 RQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY 209 (1265)
T ss_pred CcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE
Confidence 8887766542110 0 111111100011100 0011235888889999
Q ss_pred EEE-----ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE---eCCCeEEEEeCCCCC
Q 020454 177 SLF-----GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG---TNDHQVRLYDTSAQR 248 (326)
Q Consensus 177 l~s-----g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~---~~dg~v~iwd~~~~~ 248 (326)
+|+ ......|++||-+ +..-... .+.. .--.+++|-| .|.++++. +.|+.|.+|.-...+
T Consensus 210 fAVs~~~~~~~~RkirV~drE-g~Lns~s--e~~~-------~l~~~LsWkP--sgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 210 FAVSFVESETGTRKIRVYDRE-GALNSTS--EPVE-------GLQHSLSWKP--SGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred EEEEEEeccCCceeEEEeccc-chhhccc--Cccc-------ccccceeecC--CCCeEeeeeecCCCCcEEEEecCCcc
Confidence 988 3333789999976 3221111 1111 1123668888 45577765 346689999865332
Q ss_pred C--ceeEEeecCCceEEEEecCCCCeEEE---EcCCCcEEEEECCCCe
Q 020454 249 R--PVMSFDFRETPIKAVAEEPDSFNIYI---GNGSGDLASVDIRTGK 291 (326)
Q Consensus 249 ~--~~~~~~~~~~~i~~v~~s~~~~~l~~---g~~dg~v~iwd~~~~~ 291 (326)
. ....+......+..++|+.++..|++ ......|++|-+.+..
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 2 12223334445999999999999886 4444559999987753
No 338
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.96 E-value=0.0012 Score=51.44 Aligned_cols=111 Identities=17% Similarity=0.119 Sum_probs=82.5
Q ss_pred CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 253 (326)
..+++.|+..+.+..-|..+++..+...-. ..+.+-+..- ++.++.|+..|.+++.+.+++. ....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg----------~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs-~~w~ 88 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG----------VRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGS-QIWN 88 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC----------ceeeeeeEEE---CCEEEEEEccCcEEEEEecchh-heee
Confidence 478888999999999999999988874321 1122323332 3389999999999999999884 4666
Q ss_pred EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (326)
Q Consensus 254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 298 (326)
+...+.--......+++..|.+|++|+..+..|.++..++++.+.
T Consensus 89 f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 89 FVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred eeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 655433222335678899999999999999999999988887763
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.95 E-value=0.0088 Score=53.30 Aligned_cols=86 Identities=10% Similarity=-0.087 Sum_probs=57.1
Q ss_pred CCeEEEEeCCC----CCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeE------------EEEEcc
Q 020454 236 DHQVRLYDTSA----QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL------------LGCFIG 298 (326)
Q Consensus 236 dg~v~iwd~~~----~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~------------~~~~~~ 298 (326)
++.|.+.|.++ ....+..+... .....+.++|||+++++++ .+++|.|+|+.+.+. ..+..-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 46788999886 32444445444 4457889999999988554 589999999987542 333332
Q ss_pred eecceEEEEEECCCCCEEEEeccCcc
Q 020454 299 KCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 299 ~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
...-...+|.++|....|--.|.+
T Consensus 374 --GlGPLHTaFDg~G~aytslf~dsq 397 (635)
T PRK02888 374 --GLGPLHTAFDGRGNAYTTLFLDSQ 397 (635)
T ss_pred --CCCcceEEECCCCCEEEeEeecce
Confidence 223346778888876666655543
No 340
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.95 E-value=0.0012 Score=60.65 Aligned_cols=139 Identities=19% Similarity=0.188 Sum_probs=90.4
Q ss_pred cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-----CCCEEEEecCCCeEEEEECCCce-eeeeecCCC
Q 020454 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPP 204 (326)
Q Consensus 131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~ 204 (326)
....++-.|++... .|..|++....+|..+.-.. +......|-.++.|..||.|-.. .+.....+
T Consensus 502 ~~~~ly~mDLe~GK--------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k- 572 (794)
T PF08553_consen 502 NPNKLYKMDLERGK--------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK- 572 (794)
T ss_pred CCCceEEEecCCCc--------EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc-
Confidence 45677777776544 78999987766666665432 12234467788899999998532 11111111
Q ss_pred CCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEE
Q 020454 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (326)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~i 284 (326)
........++++-. .+| +||+|+.+|.||+||-- +.+.-..+.+-..+|..|..+.||++|++.+.. .+.+
T Consensus 573 ----~Y~~~~~Fs~~aTt--~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlL 643 (794)
T PF08553_consen 573 ----QYSSKNNFSCFATT--EDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLL 643 (794)
T ss_pred ----ccccCCCceEEEec--CCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEE
Confidence 11122234444443 356 89999999999999943 334334455667899999999999999876655 6777
Q ss_pred EEC
Q 020454 285 VDI 287 (326)
Q Consensus 285 wd~ 287 (326)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 764
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.89 E-value=0.00046 Score=63.25 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=89.1
Q ss_pred CCEEEEe-cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC-----CCcEEEEEeCCCeEEEEeCCCC
Q 020454 174 EKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-----DHRKFVAGTNDHQVRLYDTSAQ 247 (326)
Q Consensus 174 ~~~l~sg-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~~l~~~~~dg~v~iwd~~~~ 247 (326)
.++|+.- ...+.|+-.|++.|+.+...+.+.... |. .+.|.. .+...+.|-.+..+..||+|-.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~--------v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~ 562 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP--------VV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS 562 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcc--------ee--EecccccccccCCCceEEEECCCceEEeccCCC
Confidence 3554443 355789999999999988766654321 22 222211 1224567777889999999954
Q ss_pred CCceeEEe----ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454 248 RRPVMSFD----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 248 ~~~~~~~~----~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
...+..-. ......+|++-+.+| +||+|+.+|.|++||--..+....+++- ..+|.+|+.+.||++|+..+
T Consensus 563 ~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~l-G~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 563 GNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGL-GDPIIGIDVTADGKWILATC 637 (794)
T ss_pred CCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCC-CCCeeEEEecCCCcEEEEee
Confidence 22222111 233467787777666 8999999999999994332333346664 88999999999999876553
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.89 E-value=0.0011 Score=57.52 Aligned_cols=132 Identities=11% Similarity=0.057 Sum_probs=77.9
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (326)
Q Consensus 164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd 243 (326)
....+.++|+++++++ ..||.-.||.....+.....+ -....|.+ .+ .+|+-...++|.|+.
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G~--------------g~~~vw~~--~n-~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFGS--------------GLSFVWSS--RN-RYAVLESSSTIKIYK 95 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEEE---------------SEEEE-T--SS-EEEEE-TTS-EEEEE
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccCc--------------eeEEEEec--Cc-cEEEEECCCeEEEEE
Confidence 4678999999999988 456777788744333332211 23567776 23 688888789999973
Q ss_pred -CCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454 244 -TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 244 -~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
.... ....++.. ..+..+-. |..|...+.+ .|.+||..+++.+.++... +|..+.|++++.+++-.+.|
T Consensus 96 n~~~~--~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 96 NFKNE--VVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp TTEE---TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S-
T ss_pred cCccc--cceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC
Confidence 4322 23344332 23444322 8877776555 8999999999999999843 59999999999999988876
Q ss_pred c
Q 020454 323 E 323 (326)
Q Consensus 323 ~ 323 (326)
.
T Consensus 166 ~ 166 (443)
T PF04053_consen 166 S 166 (443)
T ss_dssp S
T ss_pred e
Confidence 4
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00023 Score=62.57 Aligned_cols=136 Identities=13% Similarity=0.179 Sum_probs=89.9
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (326)
Q Consensus 164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd 243 (326)
.+.--.++..+++++.|+.-|.+.+|+-..++.... ++.... .-+.....++ +..++|.|+..|.|.++-
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~~~~~~-------~~~~~~~vs~--~e~lvAagt~~g~V~v~q 104 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-KNEGAT-------GITCVRSVSS--VEYLVAAGTASGRVSVFQ 104 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcc-cccCcc-------ceEEEEEecc--hhHhhhhhcCCceEEeeh
Confidence 344344556789999999999999999776654332 221111 2234445555 344888999999999998
Q ss_pred CCCCCCceeEEe-----ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC----eEEEEEcceecceEEEEEEC
Q 020454 244 TSAQRRPVMSFD-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----KLLGCFIGKCSGSIRSIARH 310 (326)
Q Consensus 244 ~~~~~~~~~~~~-----~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~----~~~~~~~~~~~~~v~~l~~~ 310 (326)
+.....+-..+. .|...|++++|++++..+++|+..|.|..-.+.+. ...+.+-.. .+.|-.|+..
T Consensus 105 l~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~-ds~IVQlD~~ 179 (726)
T KOG3621|consen 105 LNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE-DSEIVQLDYL 179 (726)
T ss_pred hhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc-CcceEEeecc
Confidence 775322221111 35678999999999999999999999999888762 111222222 5567777664
No 344
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.85 E-value=0.019 Score=51.40 Aligned_cols=212 Identities=12% Similarity=0.139 Sum_probs=111.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCce--EEEEEeee---CCCCCeEEEEecCCcEEEEeccccceee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNC--VLAASIDD---SQNDPLLAVARKNGLTDILNPLNGDLRV 89 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~l~~g~~dg~i~i~~~~~~~~~~ 89 (326)
-++..++.+|.|.-.|..++ ++.-++........ ..+..... .-.+..+++++.|+.|.-+|..+|+.+-
T Consensus 70 g~vyv~s~~g~v~AlDa~TG-----k~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTG-----KELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CEEEEECCCCcEEEEECCCC-----ceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 56778888899888898877 44222221111000 00000000 0012358889999999999999999877
Q ss_pred eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------CCcEEEEEccccccc----ccccc--------
Q 020454 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVS----AESSC-------- 151 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------~g~v~i~~~~~~~~~----~~~~~-------- 151 (326)
........ ....+.+.-.. .++.++++.. +|.|.-+|.+..+.. +....
T Consensus 145 ~~~~~~~~----~~~~~tssP~v---------~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~ 211 (527)
T TIGR03075 145 SKKNGDYK----AGYTITAAPLV---------VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKAD 211 (527)
T ss_pred eccccccc----ccccccCCcEE---------ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccc
Confidence 65531100 00011110000 1235555543 566666665443210 00000
Q ss_pred ----ce--EE-----EEEccCCCceE-EEEEcCCCCEEEEecCC-----C-----------eEEEEECCCceeeeeecCC
Q 020454 152 ----ST--VK-----SWNVCASGTIA-FSKVDISEKFSLFGGKG-----V-----------EVNVWDLDKCEKIWTAKPP 203 (326)
Q Consensus 152 ----~~--~~-----~~~~~~~~~v~-~~~~~~~~~~l~sg~~d-----~-----------~i~iwd~~~~~~~~~~~~~ 203 (326)
+. .. .|.. ....+. .++++++.+++..+..+ + .|.-.|+++++..+.++..
T Consensus 212 ~~~~~~~~~~tw~~~~~~~-gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~ 290 (527)
T TIGR03075 212 KPVGGEPGAKTWPGDAWKT-GGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTT 290 (527)
T ss_pred cccccccccCCCCCCcccc-CCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCC
Confidence 00 00 1111 111222 44677766666655411 2 6778899999999998887
Q ss_pred CCCCCCcCCCCceeeeEEeecCCCc---EEEEEeCCCeEEEEeCCCC
Q 020454 204 PKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQ 247 (326)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~p~~~~~---~l~~~~~dg~v~iwd~~~~ 247 (326)
..+.+++-.+....-+.. + .+++ .++.+..+|.+++.|.+++
T Consensus 291 ~~D~wD~d~~~~p~l~d~-~-~~G~~~~~v~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 291 PHDEWDYDGVNEMILFDL-K-KDGKPRKLLAHADRNGFFYVLDRTNG 335 (527)
T ss_pred CCCCccccCCCCcEEEEe-c-cCCcEEEEEEEeCCCceEEEEECCCC
Confidence 777666533222111111 1 2443 7789999999999999887
No 345
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.71 E-value=0.00011 Score=39.13 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=32.8
Q ss_pred ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (326)
Q Consensus 250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd 286 (326)
++..+..+...|.++.|++++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566777888999999999999999999999999996
No 346
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.001 Score=61.91 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=100.1
Q ss_pred ccCCCceEEEEEcCCCCEEEE--ecCCCeEEEEECCCceee-----eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE
Q 020454 159 VCASGTIAFSKVDISEKFSLF--GGKGVEVNVWDLDKCEKI-----WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (326)
Q Consensus 159 ~~~~~~v~~~~~~~~~~~l~s--g~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~ 231 (326)
+...-++..+...++++..++ .+++-.|..||+++-... .-++++. .....+....++.|.|...- ..+
T Consensus 97 v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~---ts~ek~vf~~~~~wnP~vp~-n~a 172 (1405)
T KOG3630|consen 97 VEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSA---TSFEKPVFQLKNVWNPLVPL-NSA 172 (1405)
T ss_pred eeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccccccc---chhccccccccccccCCccc-hhh
Confidence 333456777777788754433 344447889999853211 1111111 11223345667788886433 577
Q ss_pred EEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce---ecceEEEEE
Q 020454 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIA 308 (326)
Q Consensus 232 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~l~ 308 (326)
++..|+.|++.-+....+.+.++.. ....++++|+|.|+.+++|...|++..|... ++....+++. ....|.+|.
T Consensus 173 v~l~dlsl~V~~~~~~~~~v~s~p~-t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQNVTSFPV-TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred hhccccchhhhhhhhhhhhhcccCc-ccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEE
Confidence 8888999999887755444455433 3568999999999999999999999999764 4433333321 136799999
Q ss_pred ECCCCCEEEEe
Q 020454 309 RHPTLPIIASC 319 (326)
Q Consensus 309 ~~p~~~~l~s~ 319 (326)
|-....+++.-
T Consensus 251 Wl~t~eflvvy 261 (1405)
T KOG3630|consen 251 WLSTQEFLVVY 261 (1405)
T ss_pred EecceeEEEEe
Confidence 98776676653
No 347
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00042 Score=60.96 Aligned_cols=99 Identities=8% Similarity=0.002 Sum_probs=76.1
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE---EEEEc---ce
Q 020454 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---LGCFI---GK 299 (326)
Q Consensus 226 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~---~~~~~---~~ 299 (326)
..++++.|+.-|.+++|+-..+........+..+.+...+.+++..++|+|+..|.|.++-+..+.+ .+.-+ .|
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 3459999999999999998765333334444667778888999999999999999999998876322 22212 23
Q ss_pred ecceEEEEEECCCCCEEEEeccCccC
Q 020454 300 CSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 300 ~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
...|++++|++++..+++|-.-|.+
T Consensus 124 -~~rVTal~Ws~~~~k~ysGD~~Gkv 148 (726)
T KOG3621|consen 124 -KCRVTALEWSKNGMKLYSGDSQGKV 148 (726)
T ss_pred -CceEEEEEecccccEEeecCCCceE
Confidence 7799999999999999999877764
No 348
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.56 E-value=1.5e-05 Score=68.88 Aligned_cols=182 Identities=15% Similarity=0.136 Sum_probs=110.4
Q ss_pred ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEec----CCCeEEEEECCCc--ee
Q 020454 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGG----KGVEVNVWDLDKC--EK 196 (326)
Q Consensus 124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~----~d~~i~iwd~~~~--~~ 196 (326)
..+.+|..+|.|.+-.+...... -..+-......+++++|++-. +.||.|- .|..+.|||+.+. .+
T Consensus 71 cIlavG~atG~I~l~s~r~~hdS-------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP 143 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDS-------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP 143 (783)
T ss_pred hhhhhccccCceEEeecCCcccc-------cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC
Confidence 56778888999988876643211 111222335578899998854 6777653 3456999999876 22
Q ss_pred eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecC-CCCeEEE
Q 020454 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYI 275 (326)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~l~~ 275 (326)
........ . ......+++|. .+.+++.+|...+.+.++|+|.. ...........+..+..+| .+.|+++
T Consensus 144 ke~~~fs~-~-----~l~gqns~cwl--rd~klvlaGm~sr~~~ifdlRqs--~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 144 KESPLFSS-S-----TLDGQNSVCWL--RDTKLVLAGMTSRSVHIFDLRQS--LDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccccc-c-----cccCccccccc--cCcchhhcccccchhhhhhhhhh--hhhhhhhhhhhcccceecCCCCCceec
Confidence 11111111 0 11234467776 35668899999999999999943 1222223344566677788 5677776
Q ss_pred EcCCCcEEEEE-CCCC-eEEEEEcce---ecceEEEEEECCCC-CEEEEeccCc
Q 020454 276 GNGSGDLASVD-IRTG-KLLGCFIGK---CSGSIRSIARHPTL-PIIASCGFLE 323 (326)
Q Consensus 276 g~~dg~v~iwd-~~~~-~~~~~~~~~---~~~~v~~l~~~p~~-~~l~s~s~D~ 323 (326)
- .||.|.+|| .+.- .++..+... ....+..++|+|.. ..+++++.|.
T Consensus 214 ~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS 266 (783)
T KOG1008|consen 214 N-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS 266 (783)
T ss_pred c-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc
Confidence 4 499999999 4332 222222211 12358899999954 3666666553
No 349
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.00025 Score=63.79 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=79.5
Q ss_pred EEEEcCCCCEEEEecC----CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454 167 FSKVDISEKFSLFGGK----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (326)
Q Consensus 167 ~~~~~~~~~~l~sg~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw 242 (326)
-.+|||...++|+++. .|.+.||- .+|++-. .+..|..+++++|+|. .-.|+.|-.-|.+.+|
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr----------~Vt~P~hatSLCWHpe--~~vLa~gwe~g~~~v~ 86 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR----------DVTYPVHATSLCWHPE--EFVLAQGWEMGVSDVQ 86 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc----------ccccceehhhhccChH--HHHHhhccccceeEEE
Confidence 3568888888877653 35666663 3333211 2334556788999995 3378889899999999
Q ss_pred eCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 243 d~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
..... +.-.....|..+|..+.||++|..++++..-|.|.+|...
T Consensus 87 ~~~~~-e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 87 KTNTT-ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ecCCc-eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 98754 2223334688999999999999999999999999999876
No 350
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.55 E-value=8.1e-05 Score=67.11 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=100.2
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC--eE
Q 020454 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QV 239 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg--~v 239 (326)
....+|++|+...++|+.|+-.|.|++|++.+|........|.. .|+.+. |..+|..+++.+.-. -.
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S---------avT~ve--Ps~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS---------AVTLVE--PSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccc---------cccccc--ccCCcceeeeeccccCchH
Confidence 45688999999999999999999999999999988777666653 344443 444666665554322 57
Q ss_pred EEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-ce--ecceEEEEEECCCCCEE
Q 020454 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-GK--CSGSIRSIARHPTLPII 316 (326)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-~~--~~~~v~~l~~~p~~~~l 316 (326)
.+|++.+-..+.++|... .++.|+....+-+.|+......+||++++.++.++- +- ..-.-+...|+|+..+|
T Consensus 1170 aLW~~~s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HHhccccccCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 799988655677777543 567888776666677777789999999988776632 11 01223567788887766
Q ss_pred E
Q 020454 317 A 317 (326)
Q Consensus 317 ~ 317 (326)
+
T Consensus 1246 l 1246 (1516)
T KOG1832|consen 1246 L 1246 (1516)
T ss_pred e
Confidence 5
No 351
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.52 E-value=0.012 Score=39.83 Aligned_cols=100 Identities=12% Similarity=0.138 Sum_probs=66.3
Q ss_pred eeeeEEeecC--CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE
Q 020454 216 FTSAAFLSID--DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293 (326)
Q Consensus 216 v~~~~~~p~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~ 293 (326)
|+++++..-+ ..+.|++|+.|..||+|+-. ..+.++... ..+++++-... ..++-+-.+|+|-+|+-. ..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--cee
Confidence 5666766532 22589999999999999855 346666544 66788776655 578888999999999763 344
Q ss_pred EEEcceecceEEEEEECC-CC---CEEEEeccCcc
Q 020454 294 GCFIGKCSGSIRSIARHP-TL---PIIASCGFLEA 324 (326)
Q Consensus 294 ~~~~~~~~~~v~~l~~~p-~~---~~l~s~s~D~~ 324 (326)
.+.+. ...+.++++.. ++ +-|++|=.+|.
T Consensus 75 WRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGk 107 (111)
T PF14783_consen 75 WRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGK 107 (111)
T ss_pred eeecc--CCCeEEEEEEcCCCCCceEEEEEecCCe
Confidence 44443 33466665543 32 35777766654
No 352
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.49 E-value=0.035 Score=44.51 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=68.4
Q ss_pred CceEEEEEcCCCCEEE-EecCCCeEEEEECCCcee-e---eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC
Q 020454 163 GTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEK-I---WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH 237 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~-sg~~d~~i~iwd~~~~~~-~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg 237 (326)
...+.++|+|+++.|+ +-+..+.|..|++..... + ..+...... ....-.+++.. ++++.++....+
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~g~pDG~~vD~--~G~l~va~~~~~ 205 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGG------PGYPDGLAVDS--DGNLWVADWGGG 205 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSS------SCEEEEEEEBT--TS-EEEEEETTT
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCC------CcCCCcceEcC--CCCEEEEEcCCC
Confidence 3567999999998664 667788899999863221 1 111111100 02245677765 676777777899
Q ss_pred eEEEEeCCCCCCceeEEeecCCceEEEEe-cCCCCeEEEEc
Q 020454 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAE-EPDSFNIYIGN 277 (326)
Q Consensus 238 ~v~iwd~~~~~~~~~~~~~~~~~i~~v~~-s~~~~~l~~g~ 277 (326)
.|.++|.. + +.+..+......+++++| -++.+.|++.+
T Consensus 206 ~I~~~~p~-G-~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 206 RIVVFDPD-G-KLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEETT-S-CEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEECCC-c-cEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 99999998 5 557777776668999999 46666666433
No 353
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.00028 Score=53.69 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=65.7
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEE-EecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceec-ceEE
Q 020454 228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV-AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS-GSIR 305 (326)
Q Consensus 228 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v-~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~-~~v~ 305 (326)
..++.|+.+|.|++|...........+......|.++ .--.++.+..++..||.|+.|++.-.+.+.....| . .++.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h-~~~~~e 149 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH-NFESGE 149 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccc-cCCCcc
Confidence 4789999999999999873322222222233333332 22234567889999999999999988888766665 5 6777
Q ss_pred EEEECCCCCEEEEe--ccCcc
Q 020454 306 SIARHPTLPIIASC--GFLEA 324 (326)
Q Consensus 306 ~l~~~p~~~~l~s~--s~D~~ 324 (326)
.+..+-.+++|+.+ |.|..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~ 170 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRV 170 (238)
T ss_pred eeEEecCCceEEeeccccchh
Confidence 77777777777777 66643
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.46 E-value=0.043 Score=44.82 Aligned_cols=256 Identities=11% Similarity=0.035 Sum_probs=127.5
Q ss_pred CCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceee
Q 020454 10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV 89 (326)
Q Consensus 10 ~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~ 89 (326)
+.-..-+|+.|+++| +.+++.... .+..++.. ... +..+......+ ++..-.|+.+.++++..-....
T Consensus 3 ~~~~~~~L~vGt~~G-l~~~~~~~~-~~~~~i~~----~~~---I~ql~vl~~~~---~llvLsd~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDG-LYVYDLSDP-SKPTRILK----LSS---ITQLSVLPELN---LLLVLSDGQLYVYDLDSLEPVS 70 (275)
T ss_pred cccCCCEEEEEECCC-EEEEEecCC-ccceeEee----cce---EEEEEEecccC---EEEEEcCCccEEEEchhhcccc
Confidence 334458899999999 788888322 12222211 111 33344333333 4444566999999986443322
Q ss_pred eecccCCCCC---CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccccccc-ceEEEEEccCCCce
Q 020454 90 AISNAGDSGA---QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCASGTI 165 (326)
Q Consensus 90 ~~~~~~~~~~---~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~v 165 (326)
.......+.. ...-....+...+... ........+.+.....+.+|.+..... .- ...+.+.+ ...+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~---~~~~~~~~L~va~kk~i~i~~~~~~~~----~f~~~~ke~~l--p~~~ 141 (275)
T PF00780_consen 71 TSAPLAFPKSRSLPTKLPETKGVSFFAVN---GGHEGSRRLCVAVKKKILIYEWNDPRN----SFSKLLKEISL--PDPP 141 (275)
T ss_pred ccccccccccccccccccccCCeeEEeec---cccccceEEEEEECCEEEEEEEECCcc----cccceeEEEEc--CCCc
Confidence 1100000000 0000111122222200 001334556666666899888765310 01 23444444 5788
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCC--CCC-cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN--SLG-IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (326)
Q Consensus 166 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~-~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw 242 (326)
..+.|. ++.++.|..+ ...+.|+.++............ ... ......+..+.. + ++.+|+ +. |..-.+.
T Consensus 142 ~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~e~Ll-~~-~~~g~fv 213 (275)
T PF00780_consen 142 SSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-S--DNEFLL-CY-DNIGVFV 213 (275)
T ss_pred EEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-C--CceEEE-Ee-cceEEEE
Confidence 889888 5777776644 5788899866543322111110 000 001112222222 1 333444 33 4444455
Q ss_pred eCCCCCCc-eeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce
Q 020454 243 DTSAQRRP-VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (326)
Q Consensus 243 d~~~~~~~-~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~ 299 (326)
|.... .. ...+.... ...++++ ...||++-+.+ .|.||++.++++++.+...
T Consensus 214 ~~~G~-~~r~~~i~W~~-~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 214 NKNGE-PSRKSTIQWSS-APQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred cCCCC-cCcccEEEcCC-chhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 55422 21 13455543 4556666 34578776665 5999999999999988754
No 355
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.41 E-value=0.067 Score=45.95 Aligned_cols=173 Identities=15% Similarity=0.115 Sum_probs=91.0
Q ss_pred CCceEEEEecCCcEEEEEcccccccc-----cc----------------------------ccc--eEEEEEccCCCceE
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSA-----ES----------------------------SCS--TVKSWNVCASGTIA 166 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~-----~~----------------------------~~~--~~~~~~~~~~~~v~ 166 (326)
...-++++...|.|.+|.+..+.... .. ..+ +..+.+.. .++|.
T Consensus 12 ~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~-~g~vt 90 (395)
T PF08596_consen 12 ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAK-QGPVT 90 (395)
T ss_dssp TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE----S-SEE
T ss_pred CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheecc-CCcEe
Confidence 45678889999999888776543211 00 001 12233333 56799
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee---cCCC---cEEEEEeCCCeEE
Q 020454 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS---IDDH---RKFVAGTNDHQVR 240 (326)
Q Consensus 167 ~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~---~~l~~~~~dg~v~ 240 (326)
+++.+ +=.++|+|..+|.+.|.|+|....++...-.. .........+++++.|.. .+|+ -.+++|+..|.+.
T Consensus 91 al~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~ 168 (395)
T PF08596_consen 91 ALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVL 168 (395)
T ss_dssp EEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEE
T ss_pred EEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEE
Confidence 99987 66899999999999999999988887632211 111122335788888863 2333 3788999999999
Q ss_pred EEeCCC--CCCceeEE----eecCCceEEEE-ecCC--------------------CCeEEEEcCCCcEEEEECCCCeEE
Q 020454 241 LYDTSA--QRRPVMSF----DFRETPIKAVA-EEPD--------------------SFNIYIGNGSGDLASVDIRTGKLL 293 (326)
Q Consensus 241 iwd~~~--~~~~~~~~----~~~~~~i~~v~-~s~~--------------------~~~l~~g~~dg~v~iwd~~~~~~~ 293 (326)
+|.+.. .......+ ..+.++|..+. ++.+ -+.+++...+..++++...+.+..
T Consensus 169 ~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~ 248 (395)
T PF08596_consen 169 TFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGA 248 (395)
T ss_dssp EEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EE
T ss_pred EEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCccc
Confidence 998652 11111111 13445555444 3211 112344445668999999887776
Q ss_pred EEEc
Q 020454 294 GCFI 297 (326)
Q Consensus 294 ~~~~ 297 (326)
++..
T Consensus 249 ~K~~ 252 (395)
T PF08596_consen 249 HKSF 252 (395)
T ss_dssp EEE-
T ss_pred ceee
Confidence 5544
No 356
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.014 Score=53.13 Aligned_cols=244 Identities=15% Similarity=0.095 Sum_probs=128.9
Q ss_pred EEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcE
Q 020454 56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA 135 (326)
Q Consensus 56 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v 135 (326)
+.+.+|.+..-+|+.|-.-|.+.+|...+.+. .+... .|..+|..+.|.+ +++.++++..-|.+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv~~-------th~a~i~~l~wS~--------~G~~l~t~d~~g~v 125 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTVVE-------THPAPIQGLDWSH--------DGTVLMTLDNPGSV 125 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCcee-eeecc-------CCCCCceeEEecC--------CCCeEEEcCCCcee
Confidence 44455666666899999999999999876654 33333 5567899899876 67899999999999
Q ss_pred EEEEcccccccccc------ccceEEEE--EccCCC----------------------------ceEEE--EEcCCCCEE
Q 020454 136 SMRSIEVTKVSAES------SCSTVKSW--NVCASG----------------------------TIAFS--KVDISEKFS 177 (326)
Q Consensus 136 ~i~~~~~~~~~~~~------~~~~~~~~--~~~~~~----------------------------~v~~~--~~~~~~~~l 177 (326)
.+|.++..+...+. ....+..| ++.... .-.++ .-.|+|..+
T Consensus 126 ~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F 205 (1416)
T KOG3617|consen 126 HLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEF 205 (1416)
T ss_pred EEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEE
Confidence 99998843322111 11122222 221110 00011 123567788
Q ss_pred EEecCCCeEEEEECCCc-eeeeeecCCCCCCCCcCCCCceeee--------EEeecCCCc------EEE---EEeCCCeE
Q 020454 178 LFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSA--------AFLSIDDHR------KFV---AGTNDHQV 239 (326)
Q Consensus 178 ~sg~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~p~~~~~------~l~---~~~~dg~v 239 (326)
+.++.+|+|+--|-... ..+.++...- ..+-......|..+ -|.+. .|. .=+ .|+..|.|
T Consensus 206 ~~~~~~GtVyyvdq~g~~~~V~k~dS~v-QmLf~~~~eai~~i~e~lr~~l~~v~~-~G~~ee~~~vk~sgk~GgrqGgi 283 (1416)
T KOG3617|consen 206 LFAGKSGTVYYVDQNGRQRTVHKLDSEV-QMLFMGYCEAISIIIEFLRDCLIFVLA-KGTSEERCAVKVSGKLGGRQGGI 283 (1416)
T ss_pred EEEcCCceEEEEcCCCcEEEEEEccchH-HHHHhcccceEEEEeeeceeeEEEecC-CCchHHhhhhhhccccCCccCcc
Confidence 88899999988874432 1222222110 00000000111111 11111 000 000 01111111
Q ss_pred EEEeCCCC--CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-------eEEEEEcce--ecceEEEEE
Q 020454 240 RLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-------KLLGCFIGK--CSGSIRSIA 308 (326)
Q Consensus 240 ~iwd~~~~--~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-------~~~~~~~~~--~~~~v~~l~ 308 (326)
-.=....- +.+-..+ .....+++++++..+..++.|...|.+.+|--... +-...+.+. ..+.|+.+.
T Consensus 284 A~sEssGvLr~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~ 362 (1416)
T KOG3617|consen 284 ACSESSGVLRKSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIR 362 (1416)
T ss_pred ccccccccccCCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEE
Confidence 11000000 0011111 12357899999999999999999999999953321 122233321 256899999
Q ss_pred ECCCCCEEEE
Q 020454 309 RHPTLPIIAS 318 (326)
Q Consensus 309 ~~p~~~~l~s 318 (326)
|.|-.+.++.
T Consensus 363 Wg~~k~~~av 372 (1416)
T KOG3617|consen 363 WGPIKSTAAV 372 (1416)
T ss_pred eccccchhhh
Confidence 9986665544
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0015 Score=56.98 Aligned_cols=94 Identities=21% Similarity=0.224 Sum_probs=71.7
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i 241 (326)
+..+..+.|+|.-.++|++..+|.|.+..+. -+.++.+..+..+. .++++|.| +|+.|++|-.||+|++
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v--------~~sL~W~~--DGkllaVg~kdG~I~L 88 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENV--------TASLCWRP--DGKLLAVGFKDGTIRL 88 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCcc--------ceeeeecC--CCCEEEEEecCCeEEE
Confidence 4468889999999999999999999999987 66666655433221 24899998 6889999999999999
Q ss_pred EeCCCCCCceeEE-eecCCceEEEEec
Q 020454 242 YDTSAQRRPVMSF-DFRETPIKAVAEE 267 (326)
Q Consensus 242 wd~~~~~~~~~~~-~~~~~~i~~v~~s 267 (326)
.|..++.. +..+ ...+..|.++-|+
T Consensus 89 ~Dve~~~~-l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 89 HDVEKGGR-LVSFLFSVETDISKGIWD 114 (665)
T ss_pred EEccCCCc-eeccccccccchheeecc
Confidence 99998743 4442 2344567777775
No 358
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.0042 Score=53.30 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=86.4
Q ss_pred EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc-----EEEEEeCCCeEEEEeCCCCCCc
Q 020454 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-----KFVAGTNDHQVRLYDTSAQRRP 250 (326)
Q Consensus 176 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-----~l~~~~~dg~v~iwd~~~~~~~ 250 (326)
+|.++.....|+--|++.|+.+...+.+.. |+-+.+.|...+. .-+.|-.|..|.-||+|-....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d----------i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD----------INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC----------cceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence 445666677899999999998877665543 2233343332221 2355666889999999954331
Q ss_pred e-eEEeec----CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE-EEEEcceecceEEEEEECCCCCEEEEec
Q 020454 251 V-MSFDFR----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 251 ~-~~~~~~----~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
. .-.+.+ .....|.+-..+| +|++|+.+|.|++||- .++. ...+++- ..+|..|..+.+|++|+..+
T Consensus 418 kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgL-G~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 418 KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGL-GDAIKHVDVTADGKWILATC 490 (644)
T ss_pred eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccccc-CCceeeEEeeccCcEEEEec
Confidence 1 112222 2234555544444 8999999999999997 4544 3446775 88999999999999776543
No 359
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.31 E-value=0.15 Score=47.71 Aligned_cols=228 Identities=12% Similarity=0.137 Sum_probs=115.3
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeeccccccc--------ccCCCCceEEEEecCCcEE
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQRE--------ESSSRSRTLLTCTTKGKAS 136 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~--------~~~~~~~~l~~~~~~g~v~ 136 (326)
+..|++++.++.|.-+|..+|+.+-.+................++.++..... .+...++.++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 34688888899999999999998777764221100000011233444331100 0112345788888999887
Q ss_pred EEEcccccccc-ccccceEEEEEccC---CCceEEEEEcC--CCCEEEEecC----------CCeEEEEECCCceeeeee
Q 020454 137 MRSIEVTKVSA-ESSCSTVKSWNVCA---SGTIAFSKVDI--SEKFSLFGGK----------GVEVNVWDLDKCEKIWTA 200 (326)
Q Consensus 137 i~~~~~~~~~~-~~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~sg~~----------d~~i~iwd~~~~~~~~~~ 200 (326)
-.|.+..+..- ...++.+. |+..- ...-..+.-.| .+..+++|+. +|.|+-+|.++++.++..
T Consensus 274 ALDA~TGk~~W~fg~~G~vd-l~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVD-LTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCCcee-eecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 77755433210 01111111 11000 00001111222 2345666642 688999999999999887
Q ss_pred cCCCCCCCCcCCCC--ce-------eeeEEeecCCCcEEEEEe------------------CCCeEEEEeCCCCCCceeE
Q 020454 201 KPPPKNSLGIFTPT--WF-------TSAAFLSIDDHRKFVAGT------------------NDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 201 ~~~~~~~~~~~~~~--~v-------~~~~~~p~~~~~~l~~~~------------------~dg~v~iwd~~~~~~~~~~ 253 (326)
............+. +. ...++.|.. + ++..+. ..+.|.-.|++++ +....
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TG-k~~W~ 429 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-G-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTG-KERWV 429 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCC-C-eEEEeCCCccccccCCccccCcccccceEEEEeCCCC-ceEEE
Confidence 53211111000000 00 122333321 1 222221 2345666677776 44555
Q ss_pred EeecCC----------ceEEEEecC-CCC---eEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 254 FDFRET----------PIKAVAEEP-DSF---NIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 254 ~~~~~~----------~i~~v~~s~-~~~---~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
++.... ++ -+.+.. +|+ .++.++.+|.++++|-++|+++...+
T Consensus 430 ~Q~~~hD~WD~D~~~~p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPS-LVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ecccCCccccccccCCce-EEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 543111 11 112322 553 78899999999999999999886554
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.073 Score=43.98 Aligned_cols=215 Identities=17% Similarity=0.118 Sum_probs=116.9
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~ 146 (326)
++.+--..+.|.-|+..+++. ..+... +.+.+..... ....|+++.... .+++.+...
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~-~~~~~p---------~~~~~~~~~d--------~~g~Lv~~~~g~--~~~~~~~~~-- 96 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKK-RVFPSP---------GGFSSGALID--------AGGRLIACEHGV--RLLDPDTGG-- 96 (307)
T ss_pred EEEEeCCCCeEEEecCCcCce-EEEECC---------CCcccceeec--------CCCeEEEEcccc--EEEeccCCc--
Confidence 566677778888898876654 233221 2333344333 334455544333 344432211
Q ss_pred cccccceEEEEE-c---cCCCceEEEEEcCCCCEEEEecC------C---CeEEEEECC-CceeeeeecCCCCCCCCcCC
Q 020454 147 AESSCSTVKSWN-V---CASGTIAFSKVDISEKFSLFGGK------G---VEVNVWDLD-KCEKIWTAKPPPKNSLGIFT 212 (326)
Q Consensus 147 ~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~sg~~------d---~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~ 212 (326)
.+..+. . ......+...++|+|.+-++... . ..-.+|-+. .+..+.....+-
T Consensus 97 ------~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~-------- 162 (307)
T COG3386 97 ------KITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL-------- 162 (307)
T ss_pred ------eeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE--------
Confidence 111111 1 11234667788888876654333 0 011233333 233333222211
Q ss_pred CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC--C---CC-ceeEEeecCCceEEEEecCCCCeEEEEcCCC-cEEEE
Q 020454 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--Q---RR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-DLASV 285 (326)
Q Consensus 213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~--~---~~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg-~v~iw 285 (326)
..-++++|+|.. ..++++=+..+.|.-|++.. . .+ ....+....+..-.++...+|.+.+++-.+| .|.+|
T Consensus 163 -~~~NGla~SpDg-~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 163 -TIPNGLAFSPDG-KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred -EecCceEECCCC-CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEE
Confidence 224588999942 23445556678888887652 1 11 1122223345556677778888776555554 89999
Q ss_pred ECCCCeEEEEEcceecceEEEEEEC-CCCCEEEEecc
Q 020454 286 DIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCGF 321 (326)
Q Consensus 286 d~~~~~~~~~~~~~~~~~v~~l~~~-p~~~~l~s~s~ 321 (326)
+.. |+++..+.-+ ...+++++|- |+.+.|+..+.
T Consensus 241 ~pd-G~l~~~i~lP-~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 241 NPD-GKLLGEIKLP-VKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCC-CcEEEEEECC-CCCCccceEeCCCcCEEEEEec
Confidence 988 9999888876 6788888886 55555555443
No 361
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.27 E-value=0.095 Score=44.69 Aligned_cols=160 Identities=14% Similarity=0.105 Sum_probs=73.9
Q ss_pred eEEEEEccCC--CceEEEEEcCCCCEEEEe--------------------cCCCeEEEEECCCceeeeeecCCCCCCCCc
Q 020454 153 TVKSWNVCAS--GTIAFSKVDISEKFSLFG--------------------GKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (326)
Q Consensus 153 ~~~~~~~~~~--~~v~~~~~~~~~~~l~sg--------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 210 (326)
....|+.... ..-+.+.++|..+.++|. -...++.+||+.+.+.+..+.-.....
T Consensus 169 v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~--- 245 (461)
T PF05694_consen 169 VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ--- 245 (461)
T ss_dssp EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE---
T ss_pred ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC---
Confidence 4556665332 235577788887888774 235789999999998887765432211
Q ss_pred CCCCceeeeEEeecCCCcEEEE-EeCCCeEEEEeC-CCCC---CceeEEeec-----------------CCceEEEEecC
Q 020454 211 FTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDT-SAQR---RPVMSFDFR-----------------ETPIKAVAEEP 268 (326)
Q Consensus 211 ~~~~~v~~~~~~p~~~~~~l~~-~~~dg~v~iwd~-~~~~---~~~~~~~~~-----------------~~~i~~v~~s~ 268 (326)
-+..+.|..+++..+=++ +-...+|..|-- ..+. +.+.++... ..-|+.+.+|.
T Consensus 246 ----~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl 321 (461)
T PF05694_consen 246 ----MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL 321 (461)
T ss_dssp ----EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred ----ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence 244667765544333333 333444444432 2221 011111110 24579999999
Q ss_pred CCCeEEEEc-CCCcEEEEECCCC---eEEEEEc-ce--------------ecceEEEEEECCCCCEEEEe
Q 020454 269 DSFNIYIGN-GSGDLASVDIRTG---KLLGCFI-GK--------------CSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 269 ~~~~l~~g~-~dg~v~iwd~~~~---~~~~~~~-~~--------------~~~~v~~l~~~p~~~~l~s~ 319 (326)
|.++|+..+ .+|.|+.||+... ++..++. +. ..+...-|..|.||+.|...
T Consensus 322 DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 322 DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 999998555 6899999999863 4444332 10 11233567777787765543
No 362
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.27 E-value=0.0083 Score=51.93 Aligned_cols=145 Identities=12% Similarity=0.020 Sum_probs=86.3
Q ss_pred CceEEEEEcCCCCEEEEe---cCC-CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCe
Q 020454 163 GTIAFSKVDISEKFSLFG---GKG-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg---~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~ 238 (326)
..+..-+|+|+++.++.- ... ..+.++|+.+++....+.... .-...+|+|. ..+++++...||.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g----------~~~~P~fspD-G~~l~f~~~rdg~ 261 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG----------NNGAPAFSPD-GSKLAFSSSRDGS 261 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC----------ccCCccCCCC-CCEEEEEECCCCC
Confidence 356667788887554332 222 468999999877655443211 1223478883 2335556666774
Q ss_pred --EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE-EEcCCCc--EEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454 239 --VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (326)
Q Consensus 239 --v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~--v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~ 313 (326)
|+++|+... . +..+....+.-+.=.|+|||++|+ +.+..|. |.++|...+.. ..+... .+.=..-.|+|+|
T Consensus 262 ~~iy~~dl~~~-~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~-~~~~~~p~~SpdG 337 (425)
T COG0823 262 PDIYLMDLDGK-N-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS-GGGNSNPVWSPDG 337 (425)
T ss_pred ccEEEEcCCCC-c-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc-CCCCcCccCCCCC
Confidence 566677755 2 333444334344557999999988 6566665 66666665544 333321 2222267799999
Q ss_pred CEEEEeccC
Q 020454 314 PIIASCGFL 322 (326)
Q Consensus 314 ~~l~s~s~D 322 (326)
++|+..+..
T Consensus 338 ~~i~~~~~~ 346 (425)
T COG0823 338 DKIVFESSS 346 (425)
T ss_pred CEEEEEecc
Confidence 999888743
No 363
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0017 Score=60.14 Aligned_cols=92 Identities=20% Similarity=0.300 Sum_probs=69.5
Q ss_pred EEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEE-
Q 020454 229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI- 307 (326)
Q Consensus 229 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l- 307 (326)
.++.|+..|.+-..|.+..-.+...-+...++|++++|+.+|+.++.|-.+|.|.+||+..+++++.+..| ..+.+++
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-~ap~t~vi 179 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-GAPVTGVI 179 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-CCccceEE
Confidence 78899999999999988643443443445679999999999999999999999999999999988877755 5555544
Q ss_pred --EECCCCCEEEEecc
Q 020454 308 --ARHPTLPIIASCGF 321 (326)
Q Consensus 308 --~~~p~~~~l~s~s~ 321 (326)
.+..++..+.++-.
T Consensus 180 ~v~~t~~nS~llt~D~ 195 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDT 195 (1206)
T ss_pred EEEEeCCCcEEEEccC
Confidence 33344555555543
No 364
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.17 E-value=0.0016 Score=36.68 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=30.5
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceee
Q 020454 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI 197 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~ 197 (326)
...|.++.|+|...+||.+..+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 457999999999999999999999999998 55544
No 365
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.09 E-value=0.0021 Score=36.26 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=29.6
Q ss_pred CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454 258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 258 ~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~ 292 (326)
...|..++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356899999999999999999999999998 4443
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.021 Score=49.19 Aligned_cols=142 Identities=22% Similarity=0.201 Sum_probs=87.1
Q ss_pred EEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC-------EEEEecCCCeEEEEECCCce--ee
Q 020454 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK-------FSLFGGKGVEVNVWDLDKCE--KI 197 (326)
Q Consensus 127 ~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~sg~~d~~i~iwd~~~~~--~~ 197 (326)
..+.....++-.|++... .+..|..... |.-+.+.|+.+ .-+.|-.|+.|.-||.+-.. .+
T Consensus 350 ~~~~~~~~l~klDIE~GK--------IVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGK--------IVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred eCCCCcCcceeeecccce--------eeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 334444555656655433 7788887544 66666666432 12346778899999987322 12
Q ss_pred eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc
Q 020454 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (326)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~ 277 (326)
...+.+.-. ...... +|....+| ++++|+.+|.||+||- .+.+.-.-+.+-..+|..|..+.+|++|++.+
T Consensus 420 ~~~q~kqy~-----~k~nFs--c~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 420 AVVQSKQYS-----TKNNFS--CFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred eeeeccccc-----cccccc--eeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 222222100 001112 23333456 8999999999999996 34344445667778999999999999998765
Q ss_pred CCCcEEEEECC
Q 020454 278 GSGDLASVDIR 288 (326)
Q Consensus 278 ~dg~v~iwd~~ 288 (326)
.. .+.+.+..
T Consensus 491 ~t-yLlLi~t~ 500 (644)
T KOG2395|consen 491 KT-YLLLIDTL 500 (644)
T ss_pred cc-EEEEEEEe
Confidence 54 66666653
No 367
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.04 E-value=0.084 Score=47.85 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=72.9
Q ss_pred CCCEEEEecCCCe-----EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC------eEEE
Q 020454 173 SEKFSLFGGKGVE-----VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH------QVRL 241 (326)
Q Consensus 173 ~~~~l~sg~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg------~v~i 241 (326)
+|.+.|+||.||. +..||..+.+-.....-. . ...+.....- ++.+.++|+.++ .+..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~--------~--~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~ 448 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML--------T--RRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVEC 448 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCC--------c--ceeeeEEEEE-CCEEEEEcCcCCCccccceEEE
Confidence 6788889999865 666776654422221110 0 1112222221 566777887544 5788
Q ss_pred EeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcCCCc-----EEEEECCCCeEEEE--EcceecceEEEEEECCCC
Q 020454 242 YDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-----LASVDIRTGKLLGC--FIGKCSGSIRSIARHPTL 313 (326)
Q Consensus 242 wd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~-----v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~p~~ 313 (326)
||+.+.. ..+..+...........+ ++...++|+.|+. |..||..+.+.... +... ...+....+ ++
T Consensus 449 YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~-rs~~g~~~~--~~ 523 (571)
T KOG4441|consen 449 YDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP-RSAVGVVVL--GG 523 (571)
T ss_pred EcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc-cccccEEEE--CC
Confidence 9988652 111112112122222222 5777778887763 78899887765432 2221 222222333 67
Q ss_pred CEEEEeccCcc
Q 020454 314 PIIASCGFLEA 324 (326)
Q Consensus 314 ~~l~s~s~D~~ 324 (326)
.+.+.||.||.
T Consensus 524 ~ly~vGG~~~~ 534 (571)
T KOG4441|consen 524 KLYAVGGFDGN 534 (571)
T ss_pred EEEEEecccCc
Confidence 78888888875
No 368
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.98 E-value=0.002 Score=33.89 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=29.7
Q ss_pred CeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 290 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++...+..| ...|.++.|+|.+.++++++.|+.+
T Consensus 2 ~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~d~~~ 36 (40)
T smart00320 2 GELLKTLKGH-TGPVTSVAFSPDGKYLASASDDGTI 36 (40)
T ss_pred cEEEEEEEec-CCceeEEEECCCCCEEEEecCCCeE
Confidence 3556677777 8899999999999999999999875
No 369
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.83 E-value=0.024 Score=49.19 Aligned_cols=136 Identities=16% Similarity=0.138 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCEE-EEecCCCe--EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCCe--
Q 020454 165 IAFSKVDISEKFS-LFGGKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQ-- 238 (326)
Q Consensus 165 v~~~~~~~~~~~l-~sg~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg~-- 238 (326)
-..-+|+|+|+.| ++...|+. |.++|+....... +.... ..-+.-.|+| +|+.++ +....|.
T Consensus 240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~---------gi~~~Ps~sp--dG~~ivf~Sdr~G~p~ 307 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGF---------GINTSPSWSP--DGSKIVFTSDRGGRPQ 307 (425)
T ss_pred cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCC---------ccccCccCCC--CCCEEEEEeCCCCCcc
Confidence 3455789999655 45556666 6667777665322 22211 1111336777 455554 4455554
Q ss_pred EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-CCc--EEEEECCCCeEEEEEcceecceEEEEEECCCCCE
Q 020454 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI 315 (326)
Q Consensus 239 v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg~--v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 315 (326)
|.++|+... . ...+......-..-.|+|||++|+.-+. +|. |.+.|+.++.....+.. ......-.|.|++..
T Consensus 308 I~~~~~~g~-~-~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~--~~~~e~ps~~~ng~~ 383 (425)
T COG0823 308 IYLYDLEGS-Q-VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS--TYLNESPSWAPNGRM 383 (425)
T ss_pred eEEECCCCC-c-eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc--cccCCCCCcCCCCce
Confidence 555566644 2 3444433333336689999999985443 455 77777766654333331 222333445555544
Q ss_pred E
Q 020454 316 I 316 (326)
Q Consensus 316 l 316 (326)
+
T Consensus 384 i 384 (425)
T COG0823 384 I 384 (425)
T ss_pred E
Confidence 3
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.75 E-value=0.33 Score=42.21 Aligned_cols=70 Identities=13% Similarity=0.054 Sum_probs=43.8
Q ss_pred CceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec-CCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 214 ~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
..+..++.+| +++++|.-..+|.+.+....-. +...++... ......+.|+-+...++. ....+.+....
T Consensus 217 ~~i~~iavSp--ng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~~p~~~~WCG~dav~l~--~~~~l~lvg~~ 287 (410)
T PF04841_consen 217 GPIIKIAVSP--NGKFIALFTDSGNLWVVSSDFS-EKLCEFDTDSKSPPKQMAWCGNDAVVLS--WEDELLLVGPD 287 (410)
T ss_pred CCeEEEEECC--CCCEEEEEECCCCEEEEECccc-ceeEEeecCcCCCCcEEEEECCCcEEEE--eCCEEEEECCC
Confidence 4588889998 5668888888999998876543 445555543 345677788654332222 13345555433
No 371
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.69 E-value=0.0094 Score=45.65 Aligned_cols=106 Identities=9% Similarity=0.014 Sum_probs=64.5
Q ss_pred CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 253 (326)
+.-+++|+.++.|.+|................+. + ..-+....++.+..++..||.||.|++... +.+..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~--------i-~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~ 139 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES--------I-DLGIPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGY 139 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhccccc--------c-eeccccccccceeEEeccCCceeeeccccC-ceeee
Confidence 4678899999999999886322111111111111 1 111111224457889999999999999876 33444
Q ss_pred EeecC-CceEEEEecCCCCeEEEE--cCCCcEEEEECCC
Q 020454 254 FDFRE-TPIKAVAEEPDSFNIYIG--NGSGDLASVDIRT 289 (326)
Q Consensus 254 ~~~~~-~~i~~v~~s~~~~~l~~g--~~dg~v~iwd~~~ 289 (326)
...|. .++.....+..+++++.. +.|..++.|++..
T Consensus 140 ~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 140 VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 44454 455555555566777776 7777788887764
No 372
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.62 E-value=0.3 Score=44.31 Aligned_cols=115 Identities=16% Similarity=0.149 Sum_probs=76.5
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (326)
Q Consensus 164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd 243 (326)
...-+..+.-++..++-+....+.|||.+.+...+.-.- .....|..+.|...++++.+++.+..+.|.+|-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--------~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--------SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--------cCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 344455555556655655567799999998875444221 122458899999888999999999999999986
Q ss_pred C-C----CC---CCceeEEee--c-CCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 244 T-S----AQ---RRPVMSFDF--R-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 244 ~-~----~~---~~~~~~~~~--~-~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
- | .. ..++.++.. + ..+|.+..|-++|..++.. .+.++|+|-.
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 3 1 11 123444432 2 2589999999999666543 3478888753
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.61 E-value=0.22 Score=39.81 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=96.8
Q ss_pred CceEEEEEcCCC-CEEEEecCCCe-EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-----
Q 020454 163 GTIAFSKVDISE-KFSLFGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----- 235 (326)
Q Consensus 163 ~~v~~~~~~~~~-~~l~sg~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~----- 235 (326)
.....|.++|.- .-++.+-.=|+ ..+||....+....+....... .--.-.|+| +|.+|...-.
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH-------fyGHGvfs~--dG~~LYATEndfd~~ 138 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH-------FYGHGVFSP--DGRLLYATENDFDPN 138 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce-------eecccccCC--CCcEEEeecCCCCCC
Confidence 345567788864 44555555554 6678888766544332211110 111225777 6666666533
Q ss_pred CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC------------------CCcEEEEECCCCeEEEE--
Q 020454 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG------------------SGDLASVDIRTGKLLGC-- 295 (326)
Q Consensus 236 dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~------------------dg~v~iwd~~~~~~~~~-- 295 (326)
-|.|-+||.+..-+.+.++..|.-.-..+.|.+||+.++.+.. .-++.+.|..+|.++.+
T Consensus 139 rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~ 218 (366)
T COG3490 139 RGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT 218 (366)
T ss_pred CceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhcc
Confidence 3689999999765667788877777788899999999986532 12445566666666543
Q ss_pred Ec--ceecceEEEEEECCCCCEEEEeccCc
Q 020454 296 FI--GKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 296 ~~--~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
++ -+ ...|+.++..+++.+++.|-..|
T Consensus 219 Lp~~l~-~lSiRHld~g~dgtvwfgcQy~G 247 (366)
T COG3490 219 LPASLR-QLSIRHLDIGRDGTVWFGCQYRG 247 (366)
T ss_pred Cchhhh-hcceeeeeeCCCCcEEEEEEeeC
Confidence 22 23 56799999999999888776554
No 374
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.35 Score=41.67 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=91.6
Q ss_pred eEEEEEcCCCC-EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe--CCCeEEE
Q 020454 165 IAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRL 241 (326)
Q Consensus 165 v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~--~dg~v~i 241 (326)
-..+++++.++ ..+....++.|.+.|..+.+......-.. ....+++.|. .+...++-. .++++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~----------~P~~~~~~~~-~~~vYV~n~~~~~~~vsv 144 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL----------GPVGLAVDPD-GKYVYVANAGNGNNTVSV 144 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc----------CCceEEECCC-CCEEEEEecccCCceEEE
Confidence 44677787776 55555566899999977666555433221 2346788774 223344444 3789999
Q ss_pred EeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeEEE-E----EcceecceEEEEEECCCCCE
Q 020454 242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLG-C----FIGKCSGSIRSIARHPTLPI 315 (326)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~~~-~----~~~~~~~~v~~l~~~p~~~~ 315 (326)
.|..+. ..+.+......+ ..++++|+|..+++.. .++.|.++|........ . +.- ...-..++++|++.+
T Consensus 145 id~~t~-~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~--~~~P~~i~v~~~g~~ 220 (381)
T COG3391 145 IDAATN-KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV--GTGPAGIAVDPDGNR 220 (381)
T ss_pred EeCCCC-eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc--CCCCceEEECCCCCE
Confidence 998877 445555444455 8889999999877655 78899999987765553 1 111 223457888999885
Q ss_pred EEEe
Q 020454 316 IASC 319 (326)
Q Consensus 316 l~s~ 319 (326)
+...
T Consensus 221 ~yV~ 224 (381)
T COG3391 221 VYVA 224 (381)
T ss_pred EEEE
Confidence 5443
No 375
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.58 E-value=0.24 Score=38.44 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=65.2
Q ss_pred eeeEEeecCCCcEEEEEeCCCeEEEEe--CCCCC----CceeEEee----cCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454 217 TSAAFLSIDDHRKFVAGTNDHQVRLYD--TSAQR----RPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (326)
Q Consensus 217 ~~~~~~p~~~~~~l~~~~~dg~v~iwd--~~~~~----~~~~~~~~----~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd 286 (326)
++++|... ...+..+-+.+-.|.-|| ..++. +.+..++. ..-.--.+++...|++.++.-..++|.-+|
T Consensus 161 Ngl~Wd~d-~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSD-AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred cccccccc-CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 35677632 233445667777887777 44331 11222221 111123345566788888888889999999
Q ss_pred CCCCeEEEEEcceecceEEEEEEC-CCCC-EEEEecc
Q 020454 287 IRTGKLLGCFIGKCSGSIRSIARH-PTLP-IIASCGF 321 (326)
Q Consensus 287 ~~~~~~~~~~~~~~~~~v~~l~~~-p~~~-~l~s~s~ 321 (326)
..+|+.+.+++-. ...|++.+|- |+-. +.+|+..
T Consensus 240 p~tGK~L~eiklP-t~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 240 PTTGKILLEIKLP-TPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred CCCCcEEEEEEcC-CCceEEEEecCCCccEEEEEehh
Confidence 9999999999887 8899999997 4333 4444443
No 376
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.50 E-value=0.39 Score=39.87 Aligned_cols=219 Identities=12% Similarity=0.022 Sum_probs=110.4
Q ss_pred EecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccc
Q 020454 71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS 150 (326)
Q Consensus 71 g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~ 150 (326)
|-....|.+||..+-....++... .......+. ..+.+.....+..+.++++....
T Consensus 63 G~RtDvv~~~D~~TL~~~~EI~iP-------~k~R~~~~~-----------~~~~~~ls~dgk~~~V~N~TPa~------ 118 (342)
T PF06433_consen 63 GERTDVVEIWDTQTLSPTGEIEIP-------PKPRAQVVP-----------YKNMFALSADGKFLYVQNFTPAT------ 118 (342)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEET-------TS-B--BS-------------GGGEEE-TTSSEEEEEEESSSE------
T ss_pred ccceeEEEEEecCcCcccceEecC-------Ccchheecc-----------cccceEEccCCcEEEEEccCCCC------
Confidence 556677999999887776666541 110111111 11234444445555666654322
Q ss_pred cceEEEEEccCCCceE------EEEEcCCC-CEEEEecCCCeEEEEECC-CceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454 151 CSTVKSWNVCASGTIA------FSKVDISE-KFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (326)
Q Consensus 151 ~~~~~~~~~~~~~~v~------~~~~~~~~-~~l~sg~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (326)
.+.+.++....-+. |.-.-|.+ +-|.+-+.||.+.-..+. .++...+...... .........-++.
T Consensus 119 --SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~----~~~dp~f~~~~~~ 192 (342)
T PF06433_consen 119 --SVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD----PDDDPLFEHPAYS 192 (342)
T ss_dssp --EEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESS----TTTS-B-S--EEE
T ss_pred --eEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccC----CCCcccccccceE
Confidence 33333333222111 22222322 345666788998888887 3444322111000 0000111122232
Q ss_pred ecCCCcEEEEEeCCCeEEEEeCCCCC-CceeEEee----------cCCceEEEEecCCCCeEEEEcCCC----------c
Q 020454 223 SIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDF----------RETPIKAVAEEPDSFNIYIGNGSG----------D 281 (326)
Q Consensus 223 p~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~----------~~~~i~~v~~s~~~~~l~~g~~dg----------~ 281 (326)
. .+..++-.+.+|.|+--|+.... +....+.. ..+...-+++++..+.|++--..| .
T Consensus 193 ~--~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte 270 (342)
T PF06433_consen 193 R--DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE 270 (342)
T ss_dssp T--TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred C--CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence 2 22255557889999998887542 11222221 112234467777665555432222 5
Q ss_pred EEEEECCCCeEEEEEcceecceEEEEEECCCC-CEEEEec-cCc
Q 020454 282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCG-FLE 323 (326)
Q Consensus 282 v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~s~s-~D~ 323 (326)
|-+||+.+++.+.++.. ..++.+|..+.+. ++|++.+ .|+
T Consensus 271 VWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp EEEEETTTTEEEEEEEE--EEEESEEEEESSSS-EEEEEETTTT
T ss_pred EEEEECCCCeEEEEEeC--CCccceEEEccCCCcEEEEEcCCCC
Confidence 88889999999999983 5589999999754 5776543 344
No 377
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.49 E-value=0.36 Score=39.40 Aligned_cols=217 Identities=15% Similarity=0.113 Sum_probs=110.0
Q ss_pred CCCeEEEEecCCcEEEEecc-ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454 64 NDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~ 142 (326)
.++.|++|+.+| |.+++.. ..+....... .+|..+...+ .-+.+++- .|+.++++++..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----------~~I~ql~vl~--------~~~~llvL-sd~~l~~~~L~~ 65 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----------SSITQLSVLP--------ELNLLLVL-SDGQLYVYDLDS 65 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeec----------ceEEEEEEec--------ccCEEEEE-cCCccEEEEchh
Confidence 344699999988 8999982 2333222222 3477777666 33444444 459999999886
Q ss_pred cccccccccce-----EEEEEccCCCceEEEE--EcCCC-CEEEEecCCCeEEEEECCCceeee--eecCCCCCCCCcCC
Q 020454 143 TKVSAESSCST-----VKSWNVCASGTIAFSK--VDISE-KFSLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFT 212 (326)
Q Consensus 143 ~~~~~~~~~~~-----~~~~~~~~~~~v~~~~--~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~ 212 (326)
........... ...........+..++ -...+ ..|++ .....|.+|........+ ..+ ++..
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~i~i~~~~~~~~~f~~~~k-------e~~l 137 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKKILIYEWNDPRNSFSKLLK-------EISL 137 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeeccccccceEEEE-EECCEEEEEEEECCcccccceeE-------EEEc
Confidence 54322111000 0011122233444444 22233 44544 445589998876532211 111 1223
Q ss_pred CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee------------cCCceEEEEecCCCCeEEEEcCCC
Q 020454 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF------------RETPIKAVAEEPDSFNIYIGNGSG 280 (326)
Q Consensus 213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------------~~~~i~~v~~s~~~~~l~~g~~dg 280 (326)
+..+..++|.. +.++.+..++ ..+.|+.++ .+..-+.. ...++..+.. +++.+|++- +.
T Consensus 138 p~~~~~i~~~~----~~i~v~~~~~-f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~ 208 (275)
T PF00780_consen 138 PDPPSSIAFLG----NKICVGTSKG-FYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DN 208 (275)
T ss_pred CCCcEEEEEeC----CEEEEEeCCc-eEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cc
Confidence 45678889983 2777777554 678888854 22211111 1123444444 345566653 33
Q ss_pred cEEEEECCCCeEEE--EEcceecceEEEEEECCCCCEEEEeccC
Q 020454 281 DLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 281 ~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
.-.+.|. .|++.. .+. ......++++ ..++|+..+.+
T Consensus 209 ~g~fv~~-~G~~~r~~~i~--W~~~p~~~~~--~~pyli~~~~~ 247 (275)
T PF00780_consen 209 IGVFVNK-NGEPSRKSTIQ--WSSAPQSVAY--SSPYLIAFSSN 247 (275)
T ss_pred eEEEEcC-CCCcCcccEEE--cCCchhEEEE--ECCEEEEECCC
Confidence 3333443 444433 222 2445556666 34566665543
No 378
>PHA02713 hypothetical protein; Provisional
Probab=96.37 E-value=0.34 Score=44.02 Aligned_cols=72 Identities=8% Similarity=0.047 Sum_probs=43.3
Q ss_pred CCcEEEEEeCC------CeEEEEeCCC-CC-CceeEEeecCCceEEEEecCCCCeEEEEcCCC--cEEEEECCCCeEEEE
Q 020454 226 DHRKFVAGTND------HQVRLYDTSA-QR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--DLASVDIRTGKLLGC 295 (326)
Q Consensus 226 ~~~~l~~~~~d------g~v~iwd~~~-~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg--~v~iwd~~~~~~~~~ 295 (326)
++++.+.|+.+ ..+..||+.+ .. ..+..+.........+++ +++..++|+.+| .+..||..+.+....
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence 45566777654 2467899886 31 222233222223333333 677888999888 788899988776544
Q ss_pred Ecce
Q 020454 296 FIGK 299 (326)
Q Consensus 296 ~~~~ 299 (326)
.+.|
T Consensus 541 ~~~~ 544 (557)
T PHA02713 541 CHQH 544 (557)
T ss_pred hhhc
Confidence 4444
No 379
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.35 E-value=0.64 Score=40.73 Aligned_cols=172 Identities=11% Similarity=0.162 Sum_probs=86.0
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~ 146 (326)
.+|+-..+++|+|+.--+++....+.. . ..+..+- . +.++....++.|.+||+....
T Consensus 81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~-------~--~~~~~If-----------~-G~LL~~~~~~~i~~yDw~~~~-- 137 (443)
T PF04053_consen 81 RYAVLESSSTIKIYKNFKNEVVKSIKL-------P--FSVEKIF-----------G-GNLLGVKSSDFICFYDWETGK-- 137 (443)
T ss_dssp EEEEE-TTS-EEEEETTEE-TT------------S--S-EEEEE-------------SSSEEEEETTEEEEE-TTT----
T ss_pred cEEEEECCCeEEEEEcCccccceEEcC-------C--cccceEE-----------c-CcEEEEECCCCEEEEEhhHcc--
Confidence 377777789999973323333233332 0 1233232 1 356666666689999987654
Q ss_pred cccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-----------eeeeecCCCCCCCCcCCCCc
Q 020454 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-----------KIWTAKPPPKNSLGIFTPTW 215 (326)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 215 (326)
.++..++ .+|..+-|++++++++..+.+ .+.|++..... ....... ....
T Consensus 138 ------~i~~i~v---~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---------~~~~ 198 (443)
T PF04053_consen 138 ------LIRRIDV---SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---------ISER 198 (443)
T ss_dssp ------EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---------E-S-
T ss_pred ------eeeEEec---CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE---------ecce
Confidence 4555553 248899999999999988766 67776654330 1111110 0134
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
|.+..|.- . .|+-.+.. .++. +..+ ....+..-+.++.=+.+.|+.+.++..+.|+.+..+.+..
T Consensus 199 IkSg~W~~---d-~fiYtT~~-~lkY--l~~G--e~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 199 IKSGCWVE---D-CFIYTTSN-HLKY--LVNG--ETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -SEEEEET---T-EEEEE-TT-EEEE--EETT--EEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred eEEEEEEc---C-EEEEEcCC-eEEE--EEcC--CcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 66777762 2 44444444 6665 3333 2344444456777777888778888888888888887653
No 380
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.15 Score=43.50 Aligned_cols=152 Identities=11% Similarity=0.088 Sum_probs=95.5
Q ss_pred CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee-
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA- 200 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~- 200 (326)
+.++.+.+..+|.+.-|-... ..+...-.++....++|.++.|++|.+.+|+--.+.+|.+++....+.....
T Consensus 32 DaNkqlfavrSggatgvvvkg------pndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKG------PNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred cCcceEEEEecCCeeEEEEeC------CCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 456777777888877777543 2344455566666789999999999999999999999999998543322111
Q ss_pred cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc--C
Q 020454 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN--G 278 (326)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~--~ 278 (326)
..++.. ...|.+..|..+ .-+|..+..| +.+|-....++.++..+.+.-.|.=..|.++.+.++-++ .
T Consensus 106 ~~ck~k------~~~IlGF~W~~s---~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~ 175 (657)
T KOG2377|consen 106 QECKTK------NANILGFCWTSS---TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVL 175 (657)
T ss_pred HHhccC------cceeEEEEEecC---eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccc
Confidence 111100 023667788743 3566665444 667765554455666666767777778888877655332 3
Q ss_pred CCcEEEEECCC
Q 020454 279 SGDLASVDIRT 289 (326)
Q Consensus 279 dg~v~iwd~~~ 289 (326)
.+++.=+-+++
T Consensus 176 ~n~lnpf~~~~ 186 (657)
T KOG2377|consen 176 ENVLNPFHFRA 186 (657)
T ss_pred ccccccEEEee
Confidence 33343344443
No 381
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.28 E-value=0.6 Score=39.77 Aligned_cols=147 Identities=14% Similarity=0.141 Sum_probs=76.4
Q ss_pred eEEEEEcCCCCEEEE--ecCC---CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe-ecCCCcEEEEEeCCCe
Q 020454 165 IAFSKVDISEKFSLF--GGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL-SIDDHRKFVAGTNDHQ 238 (326)
Q Consensus 165 v~~~~~~~~~~~l~s--g~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~~l~~~~~dg~ 238 (326)
+..+.|.++++.|+. ...+ ..+.+.|..+++............+.. -....|. +. +..++.....+|.
T Consensus 186 l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~-----~~~~~~~~~~-~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 186 LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV-----YDPPHFLGPD-GNEFLWISERDGY 259 (353)
T ss_dssp EEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS-----SSEEEE-TTT-SSEEEEEEETTSS
T ss_pred cccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee-----ecccccccCC-CCEEEEEEEcCCC
Confidence 667888888773322 2222 236667776655433332222222111 1233444 33 3446666667886
Q ss_pred EEEEeCCCCCCceeEEeecCCceEE-EEecCCCCeEE-EEcCCC----cEEEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454 239 VRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIY-IGNGSG----DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 239 v~iwd~~~~~~~~~~~~~~~~~i~~-v~~s~~~~~l~-~g~~dg----~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~ 312 (326)
-+||-+.........+......|+. +.|+++++.|+ ++..++ .++.-++..+..+..+... .+.-..+.|+|+
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~-~~~~~~~~~Spd 338 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE-DGDHYSASFSPD 338 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT-SSTTEEEEE-TT
T ss_pred cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC-CCCceEEEECCC
Confidence 5555444322334566566667755 67888877665 666533 4555666623344445532 222259999999
Q ss_pred CCEEEE
Q 020454 313 LPIIAS 318 (326)
Q Consensus 313 ~~~l~s 318 (326)
+++++-
T Consensus 339 g~y~v~ 344 (353)
T PF00930_consen 339 GKYYVD 344 (353)
T ss_dssp SSEEEE
T ss_pred CCEEEE
Confidence 987654
No 382
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.27 E-value=0.5 Score=44.00 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=56.5
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCC----------cee--eeeecCCCCCCCCcCCCCceeeeEEeecC-CCcEE
Q 020454 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDK----------CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKF 230 (326)
Q Consensus 164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~----------~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~~l 230 (326)
.|..+.++|+|++||..|..+.. |-.+.. ++. ...................|..+.|+|.. ++.+|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 58899999999999988886553 333321 111 11111111111111123478899999964 34589
Q ss_pred EEEeCCCeEEEEeCCCCCCceeEEe
Q 020454 231 VAGTNDHQVRLYDTSAQRRPVMSFD 255 (326)
Q Consensus 231 ~~~~~dg~v~iwd~~~~~~~~~~~~ 255 (326)
++-+.|+++|+||+.....|...+.
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEEEE
Confidence 9999999999999986555555443
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.035 Score=51.99 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=58.1
Q ss_pred ceEEEEecCCcEEEEEccccccccccccceEE--EEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVK--SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (326)
Q Consensus 124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 201 (326)
..++.|+..|.+...|+.. .++ .|+.+...+|.+++|+.+|..++.|-.+|.|.+||+..++....+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~----------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTG----------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred eeEEEEcCchhhhhhhhhc----------ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 4688899999988777543 233 5666678899999999999999999999999999999988777665
Q ss_pred CCC
Q 020454 202 PPP 204 (326)
Q Consensus 202 ~~~ 204 (326)
.+.
T Consensus 170 e~~ 172 (1206)
T KOG2079|consen 170 EHG 172 (1206)
T ss_pred ecC
Confidence 544
No 384
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.08 E-value=0.57 Score=41.54 Aligned_cols=121 Identities=11% Similarity=-0.026 Sum_probs=72.5
Q ss_pred CCceEEEEEcCCC-----CEEEEecCCCeEEEEECCC-----ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE
Q 020454 162 SGTIAFSKVDISE-----KFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (326)
Q Consensus 162 ~~~v~~~~~~~~~-----~~l~sg~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~ 231 (326)
-+.|..+.|.|-+ .+||+ -....|.+|.+.. .+.+..-..+-.+. .|.--.+..|+|... .|+
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~----~pvLpQGCVWHPk~~--iL~ 128 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREP----FPVLPQGCVWHPKKA--ILT 128 (671)
T ss_pred cceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCC----cccCCCcccccCCCc--eEE
Confidence 3579999999842 56666 4556899999862 12111111100000 111234668999654 777
Q ss_pred EEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-CCcEEEEECCC
Q 020454 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT 289 (326)
Q Consensus 232 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~ 289 (326)
+-+....-.+++.+.....++.--...+.|.|.+|.+||+.|+++-. .=.-++||-..
T Consensus 129 VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 129 VLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 76666655677777543333322244578999999999998875433 33468888654
No 385
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.98 E-value=0.52 Score=43.32 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=74.4
Q ss_pred CCceEEEEecCCcEEEEEcccccc----ccccccc-e----E-EEEEccCCCceEEEEEc--CCCCEEEEecCCCeEEEE
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKV----SAESSCS-T----V-KSWNVCASGTIAFSKVD--ISEKFSLFGGKGVEVNVW 189 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~----~~~~~~~-~----~-~~~~~~~~~~v~~~~~~--~~~~~l~sg~~d~~i~iw 189 (326)
....|++|..||.|.+|..+.--. .....+. . + -.+....+..++.++++ ...++||++++...|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 567899999999999998753110 1000010 0 0 01333345689999999 778999999999999887
Q ss_pred ECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCC---Cc-EEEEEeCCCeEEEEeC
Q 020454 190 DLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HR-KFVAGTNDHQVRLYDT 244 (326)
Q Consensus 190 d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~-~l~~~~~dg~v~iwd~ 244 (326)
-..... ....... ..+...|.+|+|.+... |. .+++++-.|.+-+|++
T Consensus 193 af~l~~~r~~~~~s-------~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPS-------HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccc-------cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 765421 1111111 11334577999988642 22 6778899999999887
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.92 E-value=0.97 Score=38.87 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=57.9
Q ss_pred CCcEEEEEccccccccccccceEEEEEccCCC-ceEEEEEcC--CCCEEEE-ecCCCeEEEE-ECCCce----eeeeecC
Q 020454 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASG-TIAFSKVDI--SEKFSLF-GGKGVEVNVW-DLDKCE----KIWTAKP 202 (326)
Q Consensus 132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~s-g~~d~~i~iw-d~~~~~----~~~~~~~ 202 (326)
...+.+||+.... .++..++...+ -...++|.. +..+=.+ +....+|..| ....++ .+-.+..
T Consensus 221 G~~l~vWD~~~r~--------~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 221 GHSLHVWDWSTRK--------LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp --EEEEEETTTTE--------EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred cCeEEEEECCCCc--------EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 4567888877654 45555654332 244566544 3433222 2234444443 323332 2222222
Q ss_pred CCCCCCCcC--------CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee--c---------------
Q 020454 203 PPKNSLGIF--------TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--R--------------- 257 (326)
Q Consensus 203 ~~~~~~~~~--------~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~--------------- 257 (326)
.+.+.+.+. .|.-|+.+..+.+ +..+.+++-..|.|+.||+.....|...-+. .
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlD-DrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~ 371 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLD-DRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKR 371 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TT-S-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS----
T ss_pred cccCcccccccccccccCCCceEeEEEccC-CCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccc
Confidence 222222221 1456788888874 4445567778999999999866555443321 1
Q ss_pred -CCceEEEEecCCCCeEEEE
Q 020454 258 -ETPIKAVAEEPDSFNIYIG 276 (326)
Q Consensus 258 -~~~i~~v~~s~~~~~l~~g 276 (326)
.+...-|..|.||+.|+..
T Consensus 372 l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 372 LRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp --S----EEE-TTSSEEEEE
T ss_pred cCCCCCeEEEccCCeEEEEE
Confidence 0123557788899888854
No 387
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.99 Score=41.25 Aligned_cols=190 Identities=12% Similarity=0.142 Sum_probs=94.4
Q ss_pred CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceE
Q 020454 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV 154 (326)
Q Consensus 75 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~ 154 (326)
-.|+||+. .|.++..+.-. + +.+.++.|. .+..|+....+|.+++|++.......-+ .+
T Consensus 64 ~~I~If~~-sG~lL~~~~w~-------~-~~lI~mgWs---------~~eeLI~v~k~g~v~Vy~~~ge~ie~~s-vg-- 122 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWK-------H-GELIGMGWS---------DDEELICVQKDGTVHVYGLLGEFIESNS-VG-- 122 (829)
T ss_pred eeEEEEec-cccchHHHHhc-------C-CCeeeeccc---------CCceEEEEeccceEEEeecchhhhcccc-cc--
Confidence 45888888 67766655431 1 367778863 4678999999999999997654322110 00
Q ss_pred EEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC-CCcEEEEE
Q 020454 155 KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAG 233 (326)
Q Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~~l~~~ 233 (326)
.+ .....|....+..+|-.+++.+ +..+.+.+.... ..++.+..+... +.. ++-...+.. ....++-.
T Consensus 123 --~e-~~~~~I~ec~~f~~GVavlt~~-g~v~~i~~~~~~-~~~~~~diP~~~--~~~----~~Wt~~~~~~~~~~ll~v 191 (829)
T KOG2280|consen 123 --FE-SQMSDIVECRFFHNGVAVLTVS-GQVILINGVEEP-KLRKMPDIPYNE--LPK----SCWTVFQPHRQSTILLDV 191 (829)
T ss_pred --cc-cccCceeEEEEecCceEEEecC-CcEEEEcCCCcc-hhhhCCCCCCcc--CCC----cceeEecCCCcceeEEee
Confidence 00 0112333333333554444432 223334443321 122222211111 000 111111110 01111111
Q ss_pred e-CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 234 T-NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 234 ~-~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
. ..+ ..++-..........+....+.+..+..||+.++|+-=..+|.|.+-+....+.+..+.
T Consensus 192 ~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 192 DVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred chhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1 111 11222222212233343344678888999999999988999999998887666655554
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.80 E-value=0.8 Score=36.99 Aligned_cols=174 Identities=8% Similarity=0.057 Sum_probs=98.5
Q ss_pred EEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC
Q 020454 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (326)
Q Consensus 54 ~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g 133 (326)
+.++.| +++.+.|++-.....-.|+=..+|+++..+.... -.-.-++.+.. .+.+.++--.++
T Consensus 88 vS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-------~~DpE~Ieyig--------~n~fvi~dER~~ 150 (316)
T COG3204 88 VSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-------FSDPETIEYIG--------GNQFVIVDERDR 150 (316)
T ss_pred ccceee--CCCcceEEEecCCCceEEEEecCCceEEEecccc-------cCChhHeEEec--------CCEEEEEehhcc
Confidence 444444 3444456666666665565555888888876521 12222344433 334555555678
Q ss_pred cEEEEEccccccccccccceEEEEEccC-CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCC--CCCCCCc
Q 020454 134 KASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP--PKNSLGI 210 (326)
Q Consensus 134 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~ 210 (326)
.+.++.++.........+-.+.+=...+ +.....++++|.++.|..+=+-+-+.||.+.........+.. +.....+
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence 8888887765433222222222222222 456889999999888878777778888877633311111111 0000001
Q ss_pred CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (326)
Q Consensus 211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~ 246 (326)
.-..|+++.|.+.. +.+++-+..++.+.-.|...
T Consensus 231 -f~~DvSgl~~~~~~-~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 231 -FVLDVSGLEFNAIT-NSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred -EeeccccceecCCC-CcEEEEecCCceEEEEecCC
Confidence 11357788898764 44777777888888888774
No 389
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.66 E-value=2 Score=40.56 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=45.4
Q ss_pred CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC---cEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 183 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~ 253 (326)
.+.|.-.|.++++..+..+....+.++.-.+....=+.+. ..++ ..++.++.+|.++++|.+++ +++..
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~l~~ 484 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRRTG-EPIVP 484 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeee-cCCCcEeeEEEEECCCCEEEEEECCCC-CEEee
Confidence 3567888999999999888766666554333221111121 1133 27889999999999999987 44443
No 390
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.60 E-value=0.67 Score=42.29 Aligned_cols=135 Identities=11% Similarity=-0.008 Sum_probs=73.4
Q ss_pred ceEEEEEcCCCCEEEEec------CCC--eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC
Q 020454 164 TIAFSKVDISEKFSLFGG------KGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN 235 (326)
Q Consensus 164 ~v~~~~~~~~~~~l~sg~------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~ 235 (326)
.+...+++|+++.++..- .|. .|.+++..... .....+. ..+.-.|+| ++..+++...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~-----------~~t~PsWsp--DG~~lw~v~d 416 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH-----------SLTRPSWSL--DADAVWVVVD 416 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC-----------CCCCceECC--CCCceEEEec
Confidence 567888999998776544 233 45555542211 1111111 133457777 3334444432
Q ss_pred ------------CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEE---EECCCCeE-E---EEE
Q 020454 236 ------------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS---VDIRTGKL-L---GCF 296 (326)
Q Consensus 236 ------------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~i---wd~~~~~~-~---~~~ 296 (326)
.+.+.+.++..+ .... .....|..+.|||||..|+.-. +|.|++ -....|+. + ..+
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~g-e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l 491 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDAS-AVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV 491 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCc-hhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe
Confidence 233433344433 1111 2245799999999999988654 477777 44444541 1 112
Q ss_pred cceecceEEEEEECCCCCEEE
Q 020454 297 IGKCSGSIRSIARHPTLPIIA 317 (326)
Q Consensus 297 ~~~~~~~v~~l~~~p~~~~l~ 317 (326)
.......+.+++|.+++.+++
T Consensus 492 ~~~l~~~~~~l~W~~~~~L~V 512 (591)
T PRK13616 492 GPGLGDTAVSLDWRTGDSLVV 512 (591)
T ss_pred ecccCCccccceEecCCEEEE
Confidence 222133468899999887553
No 391
>PHA02713 hypothetical protein; Provisional
Probab=95.60 E-value=1.8 Score=39.54 Aligned_cols=136 Identities=11% Similarity=0.091 Sum_probs=68.8
Q ss_pred CCCEEEEecCCC-----eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----------
Q 020454 173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----------- 236 (326)
Q Consensus 173 ~~~~l~sg~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d----------- 236 (326)
++++.+.||.++ .+..||..+.+-.... ..+ .+..-.+++.. ++++.+.|+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~-~mp-------~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP-DMP-------IALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECC-CCC-------cccccccEEEE---CCEEEEEeCCCccccccccccc
Confidence 567778888764 4788888765422211 111 11111111211 45577777654
Q ss_pred ------------CeEEEEeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcCC------CcEEEEECCC-CeE--EE
Q 020454 237 ------------HQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRT-GKL--LG 294 (326)
Q Consensus 237 ------------g~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d------g~v~iwd~~~-~~~--~~ 294 (326)
..+..||+.+.. ..+..+.........+++ +++..+.|+.+ ..+..||..+ .+. +.
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 247788887541 111111111111112222 46666677654 2467899987 443 33
Q ss_pred EEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 295 CFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 295 ~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
.++.. ......+.+ ++.+.+.||.|+.
T Consensus 498 ~m~~~-r~~~~~~~~--~~~iyv~Gg~~~~ 524 (557)
T PHA02713 498 TTESR-LSALHTILH--DNTIMMLHCYESY 524 (557)
T ss_pred ccCcc-cccceeEEE--CCEEEEEeeecce
Confidence 34332 222333333 7789999998873
No 392
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.60 E-value=0.64 Score=42.27 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=71.2
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~ 146 (326)
.-++-+...++.|||...+.+..+ ..+ ...+.|.++.|.... ++..+++.+....|.+|.....+..
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~-~~f------~~~~~I~dLDWtst~------d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYE-ESF------SEDDPIRDLDWTSTP------DGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEe-eee------cCCCceeeceeeecC------CCCEEEEEEcCcEEEEEEccchhhh
Confidence 334444456799999976663222 221 345789999876543 6778999999999999975432211
Q ss_pred -cccccceEEEEEcc--CCCceEEEEEcCCCCEEEEecCCCeEEEEECC
Q 020454 147 -AESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD 192 (326)
Q Consensus 147 -~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~ 192 (326)
.+.....++..++. +..+|....|.++|.+++.+ ++.+.|+|-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 12223345555443 34578899999888877654 4578888743
No 393
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.57 E-value=0.98 Score=36.41 Aligned_cols=145 Identities=10% Similarity=0.029 Sum_probs=82.5
Q ss_pred ceEEEEEcCCCCEEEEec---CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454 164 TIAFSKVDISEKFSLFGG---KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (326)
Q Consensus 164 ~v~~~~~~~~~~~l~sg~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~ 240 (326)
.+...+++++++.+|... ....+.++......... ... ..++.-.|.+. +...+....+...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~~g-----------~~l~~PS~d~~--g~~W~v~~~~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-LTG-----------GSLTRPSWDPD--GWVWTVDDGSGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-ccC-----------CccccccccCC--CCEEEEEcCCCceE
Confidence 678889999997665544 33445555543222211 111 12445567763 54666656666666
Q ss_pred EEe-CCCCCCceeEEeec--CCceEEEEecCCCCeEEEEc---CCCcEEEEECC---CC------eEEEEEcceecceEE
Q 020454 241 LYD-TSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGN---GSGDLASVDIR---TG------KLLGCFIGKCSGSIR 305 (326)
Q Consensus 241 iwd-~~~~~~~~~~~~~~--~~~i~~v~~s~~~~~l~~g~---~dg~v~iwd~~---~~------~~~~~~~~~~~~~v~ 305 (326)
++. ...+.......... ...|+.+.+||||..++.-. .++.|.+=-+. .+ ..+...... ...+.
T Consensus 91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~ 169 (253)
T PF10647_consen 91 VVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVT 169 (253)
T ss_pred EEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcce
Confidence 663 33232222222222 12899999999999888444 35677776544 23 111112222 45899
Q ss_pred EEEECCCCCEEEEeccCc
Q 020454 306 SIARHPTLPIIASCGFLE 323 (326)
Q Consensus 306 ~l~~~p~~~~l~s~s~D~ 323 (326)
.++|.+++.+++.+...+
T Consensus 170 ~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 170 DVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eeeecCCCEEEEEeCCCC
Confidence 999999988777665443
No 394
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.55 E-value=1.4 Score=38.16 Aligned_cols=157 Identities=7% Similarity=-0.085 Sum_probs=79.4
Q ss_pred CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc--cc-----
Q 020454 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN--GD----- 86 (326)
Q Consensus 14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~--~~----- 86 (326)
.-++++|+..|.+||++......+...+..... -..+..-+.+...-+..+...++--.-..+.||.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 368999999999999998665222222322221 1122222223322122233333346668888887731 11
Q ss_pred ee--eeecccCCCCCCCCCCCeeeee--cccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCC
Q 020454 87 LR--VAISNAGDSGAQPEDDGIVGLH--LFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS 162 (326)
Q Consensus 87 ~~--~~~~~~~~~~~~~~~~~i~~l~--~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (326)
.. ..+..... . .....+. .|... .....+.+=+.||.+.+++-+... -...+..-
T Consensus 116 ~~~L~~~yeh~l----~--~~a~nm~~G~Fgg~-----~~~~~IcVQS~DG~L~~feqe~~~----------f~~~lp~~ 174 (418)
T PF14727_consen 116 QYQLELIYEHSL----Q--RTAYNMCCGPFGGV-----KGRDFICVQSMDGSLSFFEQESFA----------FSRFLPDF 174 (418)
T ss_pred EEEEEEEEEEec----c--cceeEEEEEECCCC-----CCceEEEEEecCceEEEEeCCcEE----------EEEEcCCC
Confidence 10 11110000 0 1111111 11110 124678888999999999854321 11111111
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECC
Q 020454 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLD 192 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~ 192 (326)
--.-.+.+.+..+.|++++.+..+..|...
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 112245677777888899999899998865
No 395
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.55 E-value=2.2 Score=40.36 Aligned_cols=277 Identities=14% Similarity=0.038 Sum_probs=134.6
Q ss_pred CcccccCCCCCCCeeeeeecCcccEEEEEecCCcCCCccee--eeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEE
Q 020454 2 PRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVV--ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDI 79 (326)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i 79 (326)
||.--..+.+....-|+++..||.+.-+.+... +|...-. ..++ ..+...-.+..- . ..-+.+..|+-..+
T Consensus 583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~-tg~lsd~Kk~~lG--t~P~~Lr~f~sk---~-~t~vfa~sdrP~vi 655 (1096)
T KOG1897|consen 583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDIN-TGQLSDRKKVTLG--TQPISLRTFSSK---S-RTAVFALSDRPTVI 655 (1096)
T ss_pred chheeeEEeeccceEEEEEcCCceEEEEEEEcc-cceEccccccccC--CCCcEEEEEeeC---C-ceEEEEeCCCCEEE
Confidence 455445555555677888899999887665543 1111000 0111 122222223221 1 12344555566666
Q ss_pred Eeccccceeee-ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE
Q 020454 80 LNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN 158 (326)
Q Consensus 80 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~ 158 (326)
|.. ++++.-. +.. ..+..++.++.+. ....++.+ ..+.+.+..++.-... .++.
T Consensus 656 Y~~-n~kLv~spls~----------kev~~~c~f~s~a-----~~d~l~~~-~~~~l~i~tid~iqkl------~irt-- 710 (1096)
T KOG1897|consen 656 YSS-NGKLVYSPLSL----------KEVNHMCPFNSDA-----YPDSLASA-NGGALTIGTIDEIQKL------HIRT-- 710 (1096)
T ss_pred Eec-CCcEEEeccch----------HHhhhhccccccc-----CCceEEEe-cCCceEEEEecchhhc------ceee--
Confidence 665 3443222 221 1233333333221 22344444 4455666665542211 2222
Q ss_pred ccCCCceEEEEEcCCCCEEEEec-----------CCC---eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454 159 VCASGTIAFSKVDISEKFSLFGG-----------KGV---EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (326)
Q Consensus 159 ~~~~~~v~~~~~~~~~~~l~sg~-----------~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 224 (326)
+.-......+.+++....+++.+ ... .++++|-++-+.+...+....+. .-.+.++.|.-+
T Consensus 711 vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~-----~~Si~s~~~~~d 785 (1096)
T KOG1897|consen 711 VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNET-----ALSIISCKFTDD 785 (1096)
T ss_pred ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccce-----eeeeeeeeecCC
Confidence 22234455555555333333322 122 25566655544443322222111 123445557643
Q ss_pred CCCcEEEEEeC----------CCeEEEEeCCCCCC--ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454 225 DDHRKFVAGTN----------DHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 225 ~~~~~l~~~~~----------dg~v~iwd~~~~~~--~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~ 292 (326)
.+.++++|+. .|+|.+|......+ .+.+... ++.+.++.. -+|+++|. -+..|++|+..+++.
T Consensus 786 -~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v-~Gav~aL~~-fngkllA~--In~~vrLye~t~~~e 860 (1096)
T KOG1897|consen 786 -PNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV-KGAVYALVE-FNGKLLAG--INQSVRLYEWTTERE 860 (1096)
T ss_pred -CceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee-ccceeehhh-hCCeEEEe--cCcEEEEEEccccce
Confidence 2557777753 46777777654211 1222222 234444432 25666653 445899999998877
Q ss_pred EEEEcceecceEEEEEECCCCCEEEEecc
Q 020454 293 LGCFIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 293 ~~~~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
++.-..+ ..++..|...-.+..|+.|-.
T Consensus 861 Lr~e~~~-~~~~~aL~l~v~gdeI~VgDl 888 (1096)
T KOG1897|consen 861 LRIECNI-SNPIIALDLQVKGDEIAVGDL 888 (1096)
T ss_pred ehhhhcc-cCCeEEEEEEecCcEEEEeec
Confidence 7655555 778888887777777877754
No 396
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.54 E-value=0.53 Score=33.19 Aligned_cols=110 Identities=14% Similarity=0.176 Sum_probs=70.7
Q ss_pred ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-----CCCEEEEecCCCeEEEEECCCceeee
Q 020454 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKCEKIW 198 (326)
Q Consensus 124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~sg~~d~~i~iwd~~~~~~~~ 198 (326)
..|++++..|+|.+++...........+..++..++ ...|.+++-.+ +...|+.|+. ..|..||+.....++
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~F 87 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLF 87 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhh
Confidence 478899999999999977655444446677888887 45777776443 2467777654 589999998776655
Q ss_pred eecCCCCCCCCcCCCCceeeeEEeecCC-CcEEEEEeCCCeEEEEeCCC
Q 020454 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSA 246 (326)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~~l~~~~~dg~v~iwd~~~ 246 (326)
.-. .+..|.++.+-.-.+ ..-++..+.+..|.-||...
T Consensus 88 yke----------~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 88 YKE----------VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred hhh----------CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 421 123455665532111 12344445577777777663
No 397
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.47 E-value=0.098 Score=28.62 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=26.1
Q ss_pred CceEEEEecCCC---CeEEEEcCCCcEEEEECCCC
Q 020454 259 TPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 259 ~~i~~v~~s~~~---~~l~~g~~dg~v~iwd~~~~ 290 (326)
+.+.++.|+|.. .+|+..-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368899999854 48888778899999999963
No 398
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=1.5 Score=37.80 Aligned_cols=196 Identities=13% Similarity=0.109 Sum_probs=113.6
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec---CCcEEEEEcccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---KGKASMRSIEVT 143 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~---~g~v~i~~~~~~ 143 (326)
..+....++.|.+.|..+.+....... +. ...++.+.+ .++.+.++.. ++.+.+.|-...
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~v--------G~-~P~~~~~~~--------~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPV--------GL-GPVGLAVDP--------DGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeee--------cc-CCceEEECC--------CCCEEEEEecccCCceEEEEeCCCC
Confidence 455555579999999776666555543 11 233355433 4445555554 466666553322
Q ss_pred ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec-CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454 144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (326)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (326)
. .+.. ......+ ..++++|+++.++... .++.|.+.|........ -.... . .........+.+.
T Consensus 151 ~--------~~~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~-~---~~~~~~P~~i~v~ 215 (381)
T COG3391 151 K--------VTAT-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGS-L---VGVGTGPAGIAVD 215 (381)
T ss_pred e--------EEEE-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccc-c---cccCCCCceEEEC
Confidence 2 2222 1111223 8899999998665544 78899999976655543 11100 0 0011223466777
Q ss_pred ecCCCcEEEEE-eCC--CeEEEEeCCCCCCceeE-EeecCCceEEEEecCCCCeEEEEcC-CCcEEEEECCCCeEEEEEc
Q 020454 223 SIDDHRKFVAG-TND--HQVRLYDTSAQRRPVMS-FDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 223 p~~~~~~l~~~-~~d--g~v~iwd~~~~~~~~~~-~~~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~~~~~~~~~ 297 (326)
| ++..+.+. ..+ +.+...|..+. ..... ..........+..+|+|.++.+... .+.+.+.|..+.+....+.
T Consensus 216 ~--~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 216 P--DGNRVYVANDGSGSNNVLKIDTATG-NVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred C--CCCEEEEEeccCCCceEEEEeCCCc-eEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 7 44444333 333 68999998876 32222 2222114566789999999997744 4899999999887776654
No 399
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.42 E-value=1.5 Score=37.41 Aligned_cols=218 Identities=15% Similarity=0.124 Sum_probs=113.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceE-EEEEeeeCCCCCeEEEEec-C---CcEEEEecc--ccce
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCV-LAASIDDSQNDPLLAVARK-N---GLTDILNPL--NGDL 87 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~g~~-d---g~i~i~~~~--~~~~ 87 (326)
.+++..+.++=+.|||+.++ ..+.+.. .+...+ +...+......--|++++. + .+|++|.+. ++.+
T Consensus 69 SlIigTdK~~GL~VYdL~Gk------~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGK------ELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-------EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred ceEEEEeCCCCEEEEcCCCc------EEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 56788888889999999986 3333332 222222 2222222111111444443 2 469999775 3333
Q ss_pred eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEE
Q 020454 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 167 (326)
..+..... +.......+.+++.+.... ...-+.++...+|.+..|.+.....- ......+|.+.+ ...+..
T Consensus 142 -~~v~~~~~-p~~~~~~e~yGlcly~~~~----~g~~ya~v~~k~G~~~Qy~L~~~~~g-~v~~~lVR~f~~--~sQ~EG 212 (381)
T PF02333_consen 142 -TDVTDPAA-PIATDLSEPYGLCLYRSPS----TGALYAFVNGKDGRVEQYELTDDGDG-KVSATLVREFKV--GSQPEG 212 (381)
T ss_dssp -EE-CBTTC--EE-SSSSEEEEEEEE-TT----T--EEEEEEETTSEEEEEEEEE-TTS-SEEEEEEEEEE---SS-EEE
T ss_pred -eEcCCCCc-ccccccccceeeEEeecCC----CCcEEEEEecCCceEEEEEEEeCCCC-cEeeEEEEEecC--CCcceE
Confidence 22211000 0001223467777765321 01235677788899988887642210 012345777776 458999
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCc-----eeeeeecCCCCCCCCcCCCCceeeeEEeecC--CCcEEEEEeCCCeEE
Q 020454 168 SKVDISEKFSLFGGKGVEVNVWDLDKC-----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID--DHRKFVAGTNDHQVR 240 (326)
Q Consensus 168 ~~~~~~~~~l~sg~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~~l~~~~~dg~v~ 240 (326)
+..+.....|..|-++.-|.-|+.+.. +.+....+.. ....|-.++.-... .+.+|++.-.+++..
T Consensus 213 CVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~-------l~aDvEGlaly~~~~g~gYLivSsQG~~sf~ 285 (381)
T PF02333_consen 213 CVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDG-------LVADVEGLALYYGSDGKGYLIVSSQGDNSFA 285 (381)
T ss_dssp EEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSS-------B-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred EEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccc-------cccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence 999988889999999988888887632 2222222110 11346677765432 344555666688999
Q ss_pred EEeCCCCCCceeEEe
Q 020454 241 LYDTSAQRRPVMSFD 255 (326)
Q Consensus 241 iwd~~~~~~~~~~~~ 255 (326)
+||.......+..|.
T Consensus 286 Vy~r~~~~~~~g~f~ 300 (381)
T PF02333_consen 286 VYDREGPNAYVGSFR 300 (381)
T ss_dssp EEESSTT--EEEEEE
T ss_pred EEecCCCCcccceEE
Confidence 999875434455554
No 400
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.37 E-value=1.2 Score=38.94 Aligned_cols=112 Identities=17% Similarity=0.229 Sum_probs=66.1
Q ss_pred EEEEEcCCCCEEEEe-----cCCCeEEEEECCCceeeeee-cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC----
Q 020454 166 AFSKVDISEKFSLFG-----GKGVEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---- 235 (326)
Q Consensus 166 ~~~~~~~~~~~l~sg-----~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~---- 235 (326)
..+.++|+++++|.+ +....|+++|+++++.+... .. ..-..+.|.+ +++.|+....
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-----------~~~~~~~W~~--d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-----------PKFSSVSWSD--DGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-----------EESEEEEECT--TSSEEEEEECSTTT
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-----------cccceEEEeC--CCCEEEEEEeCccc
Confidence 356789999988753 22245999999999765432 11 1112378887 3334444332
Q ss_pred -------CCeEEEEeCCCCCCc-eeEEeecCCc--eEEEEecCCCCeEEEEcCC----CcEEEEECCCC
Q 020454 236 -------DHQVRLYDTSAQRRP-VMSFDFRETP--IKAVAEEPDSFNIYIGNGS----GDLASVDIRTG 290 (326)
Q Consensus 236 -------dg~v~iwd~~~~~~~-~~~~~~~~~~--i~~v~~s~~~~~l~~g~~d----g~v~iwd~~~~ 290 (326)
...|+.|.+.+.... ...+...... ...+..++++++|+..... ..+++.|+..+
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred ccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 234788887755221 2334433332 5678899999998843322 35888888874
No 401
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.25 E-value=0.59 Score=39.83 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeee
Q 020454 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~ 198 (326)
..+....|+|+++.++.. .++.|.+++..+++...
T Consensus 43 ~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQ 77 (353)
T ss_dssp TTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEE
T ss_pred cccccceeecCCCeeEEE-ecCceEEEECCCCCeEE
Confidence 467889999999998875 46799999988775443
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.24 E-value=2.4 Score=38.78 Aligned_cols=191 Identities=16% Similarity=0.185 Sum_probs=93.1
Q ss_pred CeEEEEecC------CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454 66 PLLAVARKN------GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (326)
Q Consensus 66 ~~l~~g~~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~ 139 (326)
.+.++|+.| .++..||..+++... ...+. .. ..-.+++.. .+...++|+.||.-.+-+
T Consensus 334 ~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~-----~~-R~~~~v~~l---------~g~iYavGG~dg~~~l~s 397 (571)
T KOG4441|consen 334 KLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMN-----TK-RSDFGVAVL---------DGKLYAVGGFDGEKSLNS 397 (571)
T ss_pred EEEEEccccCCCcccceEEEecCCCCceec-cCCcc-----Cc-cccceeEEE---------CCEEEEEecccccccccc
Confidence 467888888 468888887776433 22111 11 111112221 345677777786544333
Q ss_pred ccccccccccccceEEEEEccCCC--ceEEEE-EcCCCCEEEEecCCC------eEEEEECCCceeeeeecCCCCCCCCc
Q 020454 140 IEVTKVSAESSCSTVKSWNVCASG--TIAFSK-VDISEKFSLFGGKGV------EVNVWDLDKCEKIWTAKPPPKNSLGI 210 (326)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~-~~~~~~~l~sg~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~ 210 (326)
++..+. ....|.....- ...... ..-++.+.++||.++ .+..||..+++-.....-.
T Consensus 398 vE~YDp-------~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~------- 463 (571)
T KOG4441|consen 398 VECYDP-------VTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN------- 463 (571)
T ss_pred EEEecC-------CCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc-------
Confidence 222111 11223322111 111111 122577788888654 4667777665432221110
Q ss_pred CCCCceeeeEEeecCCCcEEEEEeCCC-----eEEEEeCCCCCC-ceeEEeecCCceEEEEecCCCCeEEEEcCCC----
Q 020454 211 FTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---- 280 (326)
Q Consensus 211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg-----~v~iwd~~~~~~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg---- 280 (326)
.+..-.+++.. ++.+.+.|+.|+ +|..||+.+.+- .+.........+-.+.+ ++...++|+.||
T Consensus 464 -~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 464 -TRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNL 537 (571)
T ss_pred -cccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCcccc
Confidence 11111123333 555788888776 378899886521 11112222223333333 566677888776
Q ss_pred -cEEEEECCCCeE
Q 020454 281 -DLASVDIRTGKL 292 (326)
Q Consensus 281 -~v~iwd~~~~~~ 292 (326)
+|..||..+.+.
T Consensus 538 ~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 538 NTVECYDPETDTW 550 (571)
T ss_pred ceeEEcCCCCCce
Confidence 477777776654
No 403
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.14 E-value=1.4 Score=35.42 Aligned_cols=129 Identities=13% Similarity=0.106 Sum_probs=80.7
Q ss_pred EEEEEccCCCceEEEEEcCCCCEEEEecCCC--eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE
Q 020454 154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (326)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~ 231 (326)
++.+......-...+.+..++.++-+.|.-| .|+.+|+.+++......-... -.--+++.. ++++..
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~--------~FgEGit~~---~d~l~q 104 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR--------YFGEGITIL---GDKLYQ 104 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----------EEEEEEE---TTEEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc--------ccceeEEEE---CCEEEE
Confidence 4444444445567888866788877777766 599999999987655433221 112244444 334666
Q ss_pred EEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 232 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
-.-.++...+||..+. +.+.++... ..=..++ .++..|+..+....++++|..+-+...++.
T Consensus 105 LTWk~~~~f~yd~~tl-~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 105 LTWKEGTGFVYDPNTL-KKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EESSSSEEEEEETTTT-EEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred EEecCCeEEEEccccc-eEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE
Confidence 6778999999999987 567777654 3445666 478888888888899999988765544443
No 404
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.13 E-value=3.1 Score=39.50 Aligned_cols=272 Identities=14% Similarity=0.136 Sum_probs=136.2
Q ss_pred CeeeeeecCcccEEEEEec-CCc--CCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce---
Q 020454 14 PLRALTFDSLGLIKVIEAR-GEH--GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--- 87 (326)
Q Consensus 14 ~~~l~~~~~~G~i~vw~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~--- 87 (326)
.+|.+.+|++|.+.-.-+. .++ .+..--...+++.. ...+++.. ...+|++|+.-|.=++..+.+..-
T Consensus 269 ~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~s---iassi~~L---~ng~lFvGS~~gdSqLi~L~~e~d~gs 342 (1096)
T KOG1897|consen 269 GSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETS---IASSINYL---DNGVLFVGSRFGDSQLIKLNTEPDVGS 342 (1096)
T ss_pred ccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcc---hhhhhhcc---cCceEEEeccCCceeeEEccccCCCCc
Confidence 3889999999988655544 321 11100111222221 11122222 223699999988878877653322
Q ss_pred -eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe---cCCcEEEEEccccccccccccceEEEEEccCCC
Q 020454 88 -RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---TKGKASMRSIEVTKVSAESSCSTVKSWNVCASG 163 (326)
Q Consensus 88 -~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~---~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (326)
...+..+ ..-+||..+...+.+. ...+.+++|+ .||.+++..-... -..+..-++....
T Consensus 343 y~~ilet~------~NLgPI~Dm~Vvd~d~----q~q~qivtCsGa~kdgSLRiiRngi~-------I~e~A~i~l~Gik 405 (1096)
T KOG1897|consen 343 YVVILETF------VNLGPIVDMCVVDLDR----QGQGQIVTCSGAFKDGSLRIIRNGIG-------IDELASIDLPGIK 405 (1096)
T ss_pred hhhhhhhc------ccccceeeEEEEeccc----cCCceEEEEeCCCCCCcEEEEecccc-------cceeeEeecCCcc
Confidence 2222222 2226888887766432 1245788875 5788887763321 1112222333333
Q ss_pred ceEEEE--EcCC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454 164 TIAFSK--VDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (326)
Q Consensus 164 ~v~~~~--~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~ 240 (326)
.++.++ ++++ .++|+.+-.+ .-++..+... +.....+... .....+..+-- .++.|+-.+ ...||
T Consensus 406 g~w~lk~~v~~~~d~ylvlsf~~-eTrvl~i~~e--~ee~~~~gf~-------~~~~Tif~S~i-~g~~lvQvT-s~~iR 473 (1096)
T KOG1897|consen 406 GMWSLKSMVDENYDNYLVLSFIS-ETRVLNISEE--VEETEDPGFS-------TDEQTIFCSTI-NGNQLVQVT-SNSIR 473 (1096)
T ss_pred ceeEeeccccccCCcEEEEEecc-ceEEEEEccc--eEEecccccc-------ccCceEEEEcc-CCceEEEEe-cccEE
Confidence 455555 3332 2455554433 3334444322 1111111000 11112222222 222333333 34578
Q ss_pred EEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCC--C----C
Q 020454 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT--L----P 314 (326)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~--~----~ 314 (326)
+++-. + .+..+..... ++....+.+...++.++.++.+...++..+.+....+...+..|.|++++|- + +
T Consensus 474 l~ss~-~--~~~~W~~p~~-~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~ 549 (1096)
T KOG1897|consen 474 LVSSA-G--LRSEWRPPGK-ITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSR 549 (1096)
T ss_pred EEcch-h--hhhcccCCCc-eEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcce
Confidence 88755 2 2445544433 3333334456678888888888888887766443333224778999999974 2 2
Q ss_pred EEEEeccCcc
Q 020454 315 IIASCGFLEA 324 (326)
Q Consensus 315 ~l~s~s~D~~ 324 (326)
+++.|.++..
T Consensus 550 ~~aVG~Ws~~ 559 (1096)
T KOG1897|consen 550 LLAVGLWSDI 559 (1096)
T ss_pred EEEEEeecce
Confidence 7787776653
No 405
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.97 E-value=1.4 Score=37.85 Aligned_cols=143 Identities=13% Similarity=0.050 Sum_probs=74.4
Q ss_pred CceEEEEEcCCCCEEEEec-----------CCC-eEEEEECCC--cee--eeeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454 163 GTIAFSKVDISEKFSLFGG-----------KGV-EVNVWDLDK--CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~-----------~d~-~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 226 (326)
.....|++.++|+++++-. ..+ .|.+++-.+ ++. ...+... + ...+.+++.+ +
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~------l---~~p~Gi~~~~--~ 82 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE------L---SMVTGLAVAV--G 82 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC------C---CCccceeEec--C
Confidence 3566789999999877642 223 677766433 221 1111110 1 1245677765 4
Q ss_pred CcEEEEEeCCCeEEEEeCCCC-----CC-ce-eEEeec----CCceEEEEecCCCCeEEEEcC-----------------
Q 020454 227 HRKFVAGTNDHQVRLYDTSAQ-----RR-PV-MSFDFR----ETPIKAVAEEPDSFNIYIGNG----------------- 278 (326)
Q Consensus 227 ~~~l~~~~~dg~v~iwd~~~~-----~~-~~-~~~~~~----~~~i~~v~~s~~~~~l~~g~~----------------- 278 (326)
+ +++ ++.....++.|.... +. .+ ..+... ......++|.|||.+.++-+.
T Consensus 83 G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR02604 83 G-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ 160 (367)
T ss_pred C-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence 5 444 444443344454321 11 11 112221 244778999999976553331
Q ss_pred --CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454 279 --SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 279 --dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
.|.|.-++..+++. ..+... ......++|+|++.++++-.
T Consensus 161 ~~~g~i~r~~pdg~~~-e~~a~G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 161 GLGGGLFRYNPDGGKL-RVVAHG-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCceEEEEecCCCeE-EEEecC-cCCCccceECCCCCEEEEcc
Confidence 14456666655443 233322 23356899999998877643
No 406
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=0.75 Score=40.21 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEEC---------CCceeeeeecCCCCC--CCCcCCCCceeeeEEeecC--CCcEE
Q 020454 164 TIAFSKVDISEKFSLFGGKGVEVNVWDL---------DKCEKIWTAKPPPKN--SLGIFTPTWFTSAAFLSID--DHRKF 230 (326)
Q Consensus 164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~---------~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~--~~~~l 230 (326)
.|..+..++.|..++-.|.+|.+.++=. +.++.+......... ...-...-.+..++|+|.. |. .|
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~-hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP-HL 183 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc-eE
Confidence 3778889999999998899987665431 223332222211111 1101111256678899975 44 77
Q ss_pred EEEeCCCeEEEEeCCCC
Q 020454 231 VAGTNDHQVRLYDTSAQ 247 (326)
Q Consensus 231 ~~~~~dg~v~iwd~~~~ 247 (326)
..-+.|..+|+||+...
T Consensus 184 ~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEecCcEEEEEecCCc
Confidence 78888999999998754
No 407
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.82 E-value=0.77 Score=42.27 Aligned_cols=161 Identities=13% Similarity=0.094 Sum_probs=89.4
Q ss_pred eEEEEecCCcEEEEEcccccccc---------------ccccceEEEEEccCCCceEEEEEcC--CCCEEEEecCCCeEE
Q 020454 125 TLLTCTTKGKASMRSIEVTKVSA---------------ESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVN 187 (326)
Q Consensus 125 ~l~~~~~~g~v~i~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~d~~i~ 187 (326)
.+++ ...+.|.||+++...... ...++.+..|. .+-.|+-|.+.. ....|+.+..||.|.
T Consensus 51 ~LFi-A~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p--~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 51 LLFI-AYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP--FPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred EEEE-EECCEEEEEecCCcccccccccccccccCccccccccccccCCC--CCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 4444 458889999876432211 01122222222 122355555443 447889999999999
Q ss_pred EEECCCc-----ee---eeee--cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC--CCCceeEEe
Q 020454 188 VWDLDKC-----EK---IWTA--KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRRPVMSFD 255 (326)
Q Consensus 188 iwd~~~~-----~~---~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~ 255 (326)
+|.+++- +. .... .........+..+...-+++++.....+++|+++....|.||-... .+.....-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 9987531 00 0000 0001111223344455577777333556888888888888876443 211111111
Q ss_pred ecCCceEEEEecCCC-----C-eEEEEcCCCcEEEEECC
Q 020454 256 FRETPIKAVAEEPDS-----F-NIYIGNGSGDLASVDIR 288 (326)
Q Consensus 256 ~~~~~i~~v~~s~~~-----~-~l~~g~~dg~v~iwd~~ 288 (326)
.+..-|.+|+|-++. . .|++++-.|.+.+|++.
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 245678888887653 2 77789999999998883
No 408
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.68 E-value=0.77 Score=39.67 Aligned_cols=97 Identities=18% Similarity=0.180 Sum_probs=59.1
Q ss_pred EEEEcCCCCEEEEecCCCeEEE---EECCC-c--eeeeeecCCCCCCCCcCCCCceeeeEEeec---------CCCcEEE
Q 020454 167 FSKVDISEKFSLFGGKGVEVNV---WDLDK-C--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSI---------DDHRKFV 231 (326)
Q Consensus 167 ~~~~~~~~~~l~sg~~d~~i~i---wd~~~-~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---------~~~~~l~ 231 (326)
.++.+|++++|+.+..+..+.+ |+... + ...+...-.. .+.......|+++.+.|- .+...++
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g--~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~ 83 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSG--PLDDEPGECITSILCLPLSSQKRSTGGPDWTCIA 83 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeee--eccCCCCCEEEEEEEEEeecccccCCCCCcEEEE
Confidence 4678899999999888777655 64421 1 1112211110 000101146888888775 3456899
Q ss_pred EEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEec
Q 020454 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (326)
Q Consensus 232 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s 267 (326)
+|..+|.|++|... + ..+..-..|+.+|..+...
T Consensus 84 VG~ssG~vrfyte~-G-~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 84 VGTSSGYVRFYTEN-G-VLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred EEecccEEEEEecc-c-hHHHHHhcCccceEEEEec
Confidence 99999999999975 3 2344444566777776654
No 409
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.65 E-value=0.27 Score=44.78 Aligned_cols=96 Identities=15% Similarity=0.061 Sum_probs=56.1
Q ss_pred ceeeeEEeecCCCcEEEEEe------CCC--eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC-------
Q 020454 215 WFTSAAFLSIDDHRKFVAGT------NDH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS------- 279 (326)
Q Consensus 215 ~v~~~~~~p~~~~~~l~~~~------~dg--~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d------- 279 (326)
.+.+.+++| +++.++... .|. .+.+++... .. ..+... ...+.-.|+|+|..|++....
T Consensus 351 ~vsspaiSp--dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 351 NITSAALSR--SGRQVAAVVTLGRGAPDPASSLWVGPLGG--VA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred CcccceECC--CCCEEEEEEeecCCCCCcceEEEEEeCCC--cc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEe
Confidence 466778888 455555443 243 455555432 22 333222 237788999998877765432
Q ss_pred -----CcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454 280 -----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 280 -----g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
+.+.+.++..++... . ..+.|.++.|+|||..|+...
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~-~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---R-VPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred ccCCCceEEEEeccCchhhh---c-cCCCcCeEEECCCCCEEEEEE
Confidence 233333444333322 2 256799999999999777643
No 410
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.42 E-value=0.98 Score=36.34 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=63.3
Q ss_pred eeeEEeecCCCcEEEEEeCCC-eEEEEeCCCCCCceeEEeecCC--ceEEEEecCCCCeEEEEcCC-----CcEEEEECC
Q 020454 217 TSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDFRET--PIKAVAEEPDSFNIYIGNGS-----GDLASVDIR 288 (326)
Q Consensus 217 ~~~~~~p~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~--~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~ 288 (326)
..++|+|.. ..-++.+-.-| ...++|......++ .+...+. -.-.=.|||||.+|++.-.| |.|-|||.+
T Consensus 71 Hgi~~~p~~-~ravafARrPGtf~~vfD~~~~~~pv-~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 71 HGIAFHPAL-PRAVAFARRPGTFAMVFDPNGAQEPV-TLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred CCeecCCCC-cceEEEEecCCceEEEECCCCCcCcE-EEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 355666653 33444444444 46788888664443 3222111 11123699999999965333 789999998
Q ss_pred CC-eEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454 289 TG-KLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 289 ~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
.+ ..+.+|..| .-.-..+.|.+||+.|+.+.
T Consensus 149 ~~fqrvgE~~t~-GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 149 EGFQRVGEFSTH-GIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cccceecccccC-CcCcceeEEecCCcEEEEeC
Confidence 54 345677776 65667889999999887664
No 411
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.21 E-value=2.1 Score=33.49 Aligned_cols=95 Identities=14% Similarity=0.129 Sum_probs=63.1
Q ss_pred EEEEEcCCCCEE-EEecCCCeEEEEE--CCCc-----eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC
Q 020454 166 AFSKVDISEKFS-LFGGKGVEVNVWD--LDKC-----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH 237 (326)
Q Consensus 166 ~~~~~~~~~~~l-~sg~~d~~i~iwd--~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg 237 (326)
+.++|+.+.+.+ ++-+.+-+|.-|| ..++ +.++.++..+... ...|. .++.. .+|++++++-..+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e--~~~PD---Gm~ID--~eG~L~Va~~ng~ 233 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE--SLEPD---GMTID--TEGNLYVATFNGG 233 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC--CCCCC---cceEc--cCCcEEEEEecCc
Confidence 467787766544 5566777787888 4444 3455554432111 11111 22332 2677888888899
Q ss_pred eEEEEeCCCCCCceeEEeecCCceEEEEecC
Q 020454 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEP 268 (326)
Q Consensus 238 ~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~ 268 (326)
+|...|+.++ +.+.++......|+++||--
T Consensus 234 ~V~~~dp~tG-K~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 234 TVQKVDPTTG-KILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEEECCCCC-cEEEEEEcCCCceEEEEecC
Confidence 9999999998 56889998899999999953
No 412
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.16 E-value=2.4 Score=34.01 Aligned_cols=172 Identities=14% Similarity=0.087 Sum_probs=95.9
Q ss_pred CceEEEEecCCc--EEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee
Q 020454 123 SRTLLTCTTKGK--ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (326)
Q Consensus 123 ~~~l~~~~~~g~--v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 200 (326)
+..+-+.+.-|. |+.+++.... ..+...+...---..+....+ ++..-.=.++...+||..+-+.+.++
T Consensus 56 g~LyESTG~yG~S~l~~~d~~tg~--------~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 56 GTLYESTGLYGQSSLRKVDLETGK--------VLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp TEEEEEECSTTEEEEEEEETTTSS--------EEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CEEEEeCCCCCcEEEEEEECCCCc--------EEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEEEE
Confidence 345556666664 4444443322 333333333333334555533 33334478899999999988877765
Q ss_pred cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec-----CCceEEEEecCCCCeEEE
Q 020454 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYI 275 (326)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~i~~v~~s~~~~~l~~ 275 (326)
.-.. + .| .++. ++..|+......+++++|+.+. +...++... -..++.+.|- +|...|=
T Consensus 127 ~y~~-E-------GW--GLt~----dg~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN 190 (264)
T PF05096_consen 127 PYPG-E-------GW--GLTS----DGKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN 190 (264)
T ss_dssp E-SS-S-----------EEEE----CSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred ecCC-c-------ce--EEEc----CCCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence 4432 2 22 3332 4556777777889999999876 445555432 1246667775 6666665
Q ss_pred EcCCCcEEEEECCCCeEEEEEcce--------------ecceEEEEEECCCCCEEEEe
Q 020454 276 GNGSGDLASVDIRTGKLLGCFIGK--------------CSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 276 g~~dg~v~iwd~~~~~~~~~~~~~--------------~~~~v~~l~~~p~~~~l~s~ 319 (326)
--....|...|..+|++...+... ...-.+.||++|....|...
T Consensus 191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 556678999999999988765310 02347899999866544443
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.15 E-value=0.28 Score=26.84 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=25.2
Q ss_pred ceEEEEEcCCC---CEEEEecCCCeEEEEECCC
Q 020454 164 TIAFSKVDISE---KFSLFGGKGVEVNVWDLDK 193 (326)
Q Consensus 164 ~v~~~~~~~~~---~~l~sg~~d~~i~iwd~~~ 193 (326)
.+.+++|+|+. .+|+.+-.-+.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 57899999854 5888888889999999985
No 414
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.52 E-value=3 Score=34.48 Aligned_cols=103 Identities=17% Similarity=0.071 Sum_probs=55.1
Q ss_pred ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC-CCeEE
Q 020454 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLL 293 (326)
Q Consensus 215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~-~~~~~ 293 (326)
.+..+..++ ++.+++++..-....-||.-.. .-...-......|..|.|.|++...+.+ ..|.|++=+.. ..+.-
T Consensus 146 s~~~~~r~~--dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 146 SINDITRSS--DGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp -EEEEEE-T--TS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred eeEeEEECC--CCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence 355555544 7777777776666678886532 1111122345789999999998776654 88888888722 22221
Q ss_pred EE--Ecce-ecceEEEEEECCCCCEEEEecc
Q 020454 294 GC--FIGK-CSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 294 ~~--~~~~-~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
.. .+.. ..-.+..++|.+++.+.++|+.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 11 1110 0224789999998888887764
No 415
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.25 E-value=0.58 Score=36.72 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=47.2
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCceeE------Ee-------ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMS------FD-------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 226 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~------~~-------~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~ 292 (326)
.++++++.+.+|.+++||+.+.+..+.. +. .....|..+.++.+|.-|++- .+|..+.|+..-+..
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L~~W 99 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDLGCW 99 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEecccccee
Confidence 4458999999999999999976332111 11 244678888999888777654 467899998775543
Q ss_pred E
Q 020454 293 L 293 (326)
Q Consensus 293 ~ 293 (326)
+
T Consensus 100 ~ 100 (219)
T PF07569_consen 100 I 100 (219)
T ss_pred E
Confidence 3
No 416
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.13 E-value=1.2 Score=38.93 Aligned_cols=131 Identities=14% Similarity=0.096 Sum_probs=79.2
Q ss_pred EEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC-----cEEEEEeCCCeEEEEeCCCCCCce
Q 020454 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-----RKFVAGTNDHQVRLYDTSAQRRPV 251 (326)
Q Consensus 177 l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-----~~l~~~~~dg~v~iwd~~~~~~~~ 251 (326)
+..|+....++--|++.|+.+...+.+... -+.|.|.... ..-++|-.+..|.-.|+|.....+
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv-----------vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV-----------VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc-----------eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence 345666677888888888887766554332 2344443111 123445556667777887542223
Q ss_pred eEEeec----CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454 252 MSFDFR----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 252 ~~~~~~----~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
...+.. .....+..- ....+|++|+..|-|++||--.-+....+++- ...|..|....+|.+|++.+
T Consensus 552 ~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~l-G~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGL-GDAIKHIDVTANGKHILATC 622 (776)
T ss_pred eeeeehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCccc-ccceeeeEeecCCcEEEEee
Confidence 222221 122233222 23459999999999999996554444556664 77899999999998765543
No 417
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.97 E-value=0.7 Score=24.96 Aligned_cols=31 Identities=29% Similarity=0.551 Sum_probs=24.5
Q ss_pred CCCCeEEEEc-CCCcEEEEECCCCeEEEEEcc
Q 020454 268 PDSFNIYIGN-GSGDLASVDIRTGKLLGCFIG 298 (326)
Q Consensus 268 ~~~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~ 298 (326)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5777777655 578999999999988887763
No 418
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.93 E-value=5.8 Score=34.48 Aligned_cols=81 Identities=15% Similarity=0.041 Sum_probs=49.1
Q ss_pred ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC-ce---EEEEec-------------CC-CCeEE-E
Q 020454 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET-PI---KAVAEE-------------PD-SFNIY-I 275 (326)
Q Consensus 215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~i---~~v~~s-------------~~-~~~l~-~ 275 (326)
.+.++..+| .+++.++...-|+|.++|+... ..++.+++-.. .+ ....-. +. ..+|+ =
T Consensus 309 ~~~~i~~sP--~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 309 EGESICLSP--SGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred eEEEEEECC--CCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 456677777 4657777777789999999876 44555543211 11 100000 00 12333 4
Q ss_pred EcCCCcEEEEECCCCeEEEEEcc
Q 020454 276 GNGSGDLASVDIRTGKLLGCFIG 298 (326)
Q Consensus 276 g~~dg~v~iwd~~~~~~~~~~~~ 298 (326)
.-.-|.|.||.+++|..+..+..
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEEe
Confidence 45678999999999888877653
No 419
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.79 E-value=0.014 Score=49.88 Aligned_cols=142 Identities=11% Similarity=0.044 Sum_probs=91.6
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (326)
Q Consensus 167 ~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~ 246 (326)
...|-+.+.-++.++.+..+..||-........ +.+.. .-.++|.-. ....++.+-..+.+.+||+.+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le~--n~tg~---------aldm~wDke-gdvlavlAek~~piylwd~n~ 106 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILEL--NPTGK---------ALDMAWDKE-GDVLAVLAEKTGPIYLWDVNS 106 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceeccc--CCchh---------Hhhhhhccc-cchhhhhhhcCCCeeechhhh
Confidence 344556665588888888899998543322211 11111 223344431 222455667788999999885
Q ss_pred CCCceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 247 QRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 247 ~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
.. ..+++. ....-.-+.|++....++.|...|.+.|++..+.+..-..-.| ..++.+++|.+.+ +.+.++.|..
T Consensus 107 ey--tqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh-~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 107 EY--TQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKH-QRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred hh--HHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccc-ccceeEEEecccc-eeeecCcHHH
Confidence 42 233332 1222222679999999999999999999999887766544446 8899999999876 5667777754
No 420
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=92.63 E-value=12 Score=37.23 Aligned_cols=75 Identities=21% Similarity=0.422 Sum_probs=48.6
Q ss_pred cccCCCCCCC----ee-----eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCC
Q 020454 5 TTLECPGCPP----LR-----ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNG 75 (326)
Q Consensus 5 ~~~~~~~~~~----~~-----l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg 75 (326)
..++|+.|.. .+ .++...||.+.|=|.+ .+.+.........++.+.....+-.=++|+.-.||
T Consensus 348 R~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN--------yIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdg 419 (1899)
T KOG4659|consen 348 RDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN--------YIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDG 419 (1899)
T ss_pred ccccCCCCCCccccceeeceeeEEEcCCCcEEEccch--------heeeecCCCceEEEEEecCCCccceeEEEecCcCc
Confidence 4578888876 22 4567889998887765 22233333444555555544433344789999999
Q ss_pred cEEEEeccccce
Q 020454 76 LTDILNPLNGDL 87 (326)
Q Consensus 76 ~i~i~~~~~~~~ 87 (326)
++.|=|..+.++
T Consensus 420 tlyvSdp~s~qv 431 (1899)
T KOG4659|consen 420 TLYVSDPLSKQV 431 (1899)
T ss_pred eEEecCCCcceE
Confidence 999988866555
No 421
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.59 E-value=0.7 Score=24.61 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=20.1
Q ss_pred ecCCceEEEEecCCCCeEE-EEcCC--CcEEEE
Q 020454 256 FRETPIKAVAEEPDSFNIY-IGNGS--GDLASV 285 (326)
Q Consensus 256 ~~~~~i~~v~~s~~~~~l~-~g~~d--g~v~iw 285 (326)
..........|+|||++|+ ++..+ |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445567789999999887 55566 666665
No 422
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=92.51 E-value=10 Score=36.26 Aligned_cols=150 Identities=14% Similarity=0.147 Sum_probs=89.9
Q ss_pred EEEEEccCCCceEEEEEc---C----CCCEEEEecCCCeEEEEECCCcee---------------eeeecCCCCCCCCcC
Q 020454 154 VKSWNVCASGTIAFSKVD---I----SEKFSLFGGKGVEVNVWDLDKCEK---------------IWTAKPPPKNSLGIF 211 (326)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~---~----~~~~l~sg~~d~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~ 211 (326)
-..|.+....+|..+.|. . ..++|++- ....+.|+...-.+. +..+.....
T Consensus 71 ~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~t------ 143 (765)
T PF10214_consen 71 SGAWSIDDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDT------ 143 (765)
T ss_pred cceeEcCCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhc------
Confidence 345776778899999988 2 22577664 445677777322211 111111110
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC-C--CceeEEe-ec----------CCceEEEEecCCCCeEEEEc
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-R--RPVMSFD-FR----------ETPIKAVAEEPDSFNIYIGN 277 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~-~--~~~~~~~-~~----------~~~i~~v~~s~~~~~l~~g~ 277 (326)
.......++|+|... ..||+....|...|||+... + ....... .. ......+.|.++-+.|++.+
T Consensus 144 gg~~~aDv~FnP~~~-~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~ 222 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQ-RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN 222 (765)
T ss_pred CCCccceEEeccCcc-ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc
Confidence 112466889999754 48999999999999999211 0 1111111 11 12334788988888888866
Q ss_pred CCCcEEEEECCCCeEEE-EEcceecceEEEEEECCC
Q 020454 278 GSGDLASVDIRTGKLLG-CFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 278 ~dg~v~iwd~~~~~~~~-~~~~~~~~~v~~l~~~p~ 312 (326)
.. .+.++|+++..... .........|..+.-+|.
T Consensus 223 r~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 223 RS-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred CC-ceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 55 78999999876533 222112557777777776
No 423
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.30 E-value=4.9 Score=32.08 Aligned_cols=145 Identities=14% Similarity=0.192 Sum_probs=78.0
Q ss_pred EEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC---CeEEEEECCC--ceeeeeecCCCCCCCCc
Q 020454 136 SMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDK--CEKIWTAKPPPKNSLGI 210 (326)
Q Consensus 136 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~~--~~~~~~~~~~~~~~~~~ 210 (326)
.+||+... +++-..+....-+..=.+-++|++|.+||.. ..+++++... ....+.... ..+
T Consensus 49 ~~yD~~tn---------~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~-----~~m 114 (243)
T PF07250_consen 49 VEYDPNTN---------TFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESP-----NDM 114 (243)
T ss_pred EEEecCCC---------cEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECc-----ccc
Confidence 46776543 2333333333334444577899999998863 3377777543 011111100 113
Q ss_pred CCCCceeeeEEeecCCCcEEEEEeCCC-eEEEEeCCCCCCceeEEee--------cCCceEEEEecCCCCeEEEEcCCCc
Q 020454 211 FTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDF--------RETPIKAVAEEPDSFNIYIGNGSGD 281 (326)
Q Consensus 211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~--------~~~~i~~v~~s~~~~~l~~g~~dg~ 281 (326)
..+.|-.+....| +|+.|+.|+... +..+|..+........+.. ....--.+-..|+|+.++.+..+
T Consensus 115 ~~~RWYpT~~~L~--DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-- 190 (243)
T PF07250_consen 115 QSGRWYPTATTLP--DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-- 190 (243)
T ss_pred cCCCccccceECC--CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--
Confidence 3445655666666 677888887664 4455554321111111110 11122234566999999888765
Q ss_pred EEEEECCCCeEEEEEcc
Q 020454 282 LASVDIRTGKLLGCFIG 298 (326)
Q Consensus 282 v~iwd~~~~~~~~~~~~ 298 (326)
-.|||..+.+.++.++.
T Consensus 191 s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 191 SIIYDYKTNTVVRTLPD 207 (243)
T ss_pred cEEEeCCCCeEEeeCCC
Confidence 45578888877766653
No 424
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.20 E-value=3.6 Score=39.78 Aligned_cols=135 Identities=9% Similarity=-0.066 Sum_probs=76.5
Q ss_pred EecCCcEEEEEccccccccccccceEEEEEc--cCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCC
Q 020454 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK 205 (326)
Q Consensus 129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~ 205 (326)
.+.+-.|..||+.......-.....++.-.. .......++.|+|.- ...+....|+.|++..+........
T Consensus 120 tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~------ 193 (1405)
T KOG3630|consen 120 TSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVT------ 193 (1405)
T ss_pred ecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhc------
Confidence 3343466778876533211111222221111 112346678888864 4455667888888876653222111
Q ss_pred CCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-CceeEEee-cCCceEEEEecCCCCeEE
Q 020454 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDF-RETPIKAVAEEPDSFNIY 274 (326)
Q Consensus 206 ~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~-~~~~i~~v~~s~~~~~l~ 274 (326)
.+.....+++++|+| .|+.++.|-..|++.-|...-.. ..+..... ....|.+|+|-....+++
T Consensus 194 ---s~p~t~~~Tav~WSp--rGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 194 ---SFPVTNSQTAVLWSP--RGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred ---ccCcccceeeEEecc--ccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 112234578999998 57799999999999999865321 11111111 247899999976655555
No 425
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.44 E-value=7.9 Score=32.71 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=41.9
Q ss_pred CceEEEEecC-------CCCeEEEEcCCCcEEEEECCCCeEEE---EEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 259 TPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKLLG---CFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 259 ~~i~~v~~s~-------~~~~l~~g~~dg~v~iwd~~~~~~~~---~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..+..+.|-. +|.++++.-..+.|....+..+..+. .+-.....++..|++.|||.+.++-..+|.+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 4566666653 35566666667788888887553322 2222214489999999999998888877753
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.32 E-value=9.3 Score=35.37 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=28.4
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeee
Q 020454 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 199 (326)
+.+..+.++|+.++|+--...|.|.+-+....+....
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce 253 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCE 253 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhc
Confidence 3577888999999998888888988887765555444
No 427
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.26 E-value=1.5 Score=40.00 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=42.3
Q ss_pred cEEEEEeCCCeEEEEeCCC---CCCceeEEe----------------------ecCCceEEEEecC----CCCeEEEEcC
Q 020454 228 RKFVAGTNDHQVRLYDTSA---QRRPVMSFD----------------------FRETPIKAVAEEP----DSFNIYIGNG 278 (326)
Q Consensus 228 ~~l~~~~~dg~v~iwd~~~---~~~~~~~~~----------------------~~~~~i~~v~~s~----~~~~l~~g~~ 278 (326)
..++.+..||.+....... ......... ........+++++ +..++++-+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 3778888889888777553 111111111 0123455566666 6789999999
Q ss_pred CCcEEEEECCCCeEEEEE
Q 020454 279 SGDLASVDIRTGKLLGCF 296 (326)
Q Consensus 279 dg~v~iwd~~~~~~~~~~ 296 (326)
|+.+++||+.+++++...
T Consensus 239 D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 239 DHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TSEEEEEETTTTCEEEEE
T ss_pred CCeEEEEECCCCeEEEEe
Confidence 999999999999986654
No 428
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=91.25 E-value=14 Score=35.24 Aligned_cols=200 Identities=12% Similarity=0.060 Sum_probs=105.1
Q ss_pred ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceE--EEEEcCCCCEEEEecCC---CeEEEEECCC--c--
Q 020454 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA--FSKVDISEKFSLFGGKG---VEVNVWDLDK--C-- 194 (326)
Q Consensus 124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~sg~~d---~~i~iwd~~~--~-- 194 (326)
.-+++...+|.+.+|-.+............++.. ......|. ++++..+|+.++.+..+ +.|++|.+.- +
T Consensus 63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~-~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~ 141 (753)
T PF11635_consen 63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESL-GSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAK 141 (753)
T ss_pred eEEEEEecCCeEEEEEEcCCCccceeehhhhccc-cccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCc
Confidence 4688999999999998743221111100000000 00123344 44444566555544444 7788876531 1
Q ss_pred e--------eeeeecCCCCCC-CCcC-----------CCCceeeeEEee----cCC-CcEEEEEeC----CCeEEEEeCC
Q 020454 195 E--------KIWTAKPPPKNS-LGIF-----------TPTWFTSAAFLS----IDD-HRKFVAGTN----DHQVRLYDTS 245 (326)
Q Consensus 195 ~--------~~~~~~~~~~~~-~~~~-----------~~~~v~~~~~~p----~~~-~~~l~~~~~----dg~v~iwd~~ 245 (326)
+ +...+....... .... ....++.+.|.+ .+. ...+++.+. ...|.-|.++
T Consensus 142 ~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~ 221 (753)
T PF11635_consen 142 PQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELR 221 (753)
T ss_pred CccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEE
Confidence 0 111111110000 0000 112566777776 222 224444432 3479999987
Q ss_pred CCCCceeEE--------------------e-----ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE----
Q 020454 246 AQRRPVMSF--------------------D-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF---- 296 (326)
Q Consensus 246 ~~~~~~~~~--------------------~-----~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~---- 296 (326)
....+++.. . .....|.+++...-+.+++....||+|.++|-.+.+.+...
T Consensus 222 ~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~ 301 (753)
T PF11635_consen 222 EEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNG 301 (753)
T ss_pred ccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccccccc
Confidence 542322111 1 11246777777667889999999999999998876544333
Q ss_pred c-----------ce---ecceEEEEEECCCCCEEEEeccCcc
Q 020454 297 I-----------GK---CSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 297 ~-----------~~---~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
. |. +..++..++|+|.+-.++.-..||.
T Consensus 302 ~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~ 343 (753)
T PF11635_consen 302 EPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGK 343 (753)
T ss_pred CCccccccccccccccccCCCCceEEECcccceEEEEecCCC
Confidence 1 00 1123446789999888888777765
No 429
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.79 E-value=15 Score=34.71 Aligned_cols=74 Identities=12% Similarity=-0.021 Sum_probs=48.7
Q ss_pred ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC---------CC--ceeEEe--------ecCCceEEEEecCC---CCe
Q 020454 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---------RR--PVMSFD--------FRETPIKAVAEEPD---SFN 272 (326)
Q Consensus 215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~---------~~--~~~~~~--------~~~~~i~~v~~s~~---~~~ 272 (326)
.|..+..+| +|.+++..+..|.+.+.=++.. +. ...++. .....|..+.|+|. +.+
T Consensus 86 ~v~~i~~n~--~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNP--TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eEEEEEECC--CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 577777777 5667887776664444333211 11 111221 22347889999997 589
Q ss_pred EEEEcCCCcEEEEECCCC
Q 020454 273 IYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 273 l~~g~~dg~v~iwd~~~~ 290 (326)
|++-+.|+++++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999753
No 430
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.70 E-value=7.7 Score=31.30 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=58.8
Q ss_pred ceeeeEEeecCCCcEEEEEe---CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE-CCCC
Q 020454 215 WFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD-IRTG 290 (326)
Q Consensus 215 ~v~~~~~~p~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd-~~~~ 290 (326)
.+.+.+.++ ++..++... ....++++.... . ..... ....++.-.|++++...+....+...+++. ..++
T Consensus 25 ~~~s~AvS~--dg~~~A~v~~~~~~~~L~~~~~~~--~-~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSP--DGSRVAAVSEGDGGRSLYVGPAGG--P-VRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECC--CCCeEEEEEEcCCCCEEEEEcCCC--c-ceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 356778887 444555444 333455554332 2 22221 223678889999988777777777777774 3333
Q ss_pred eEE-EEEcce-ecceEEEEEECCCCCEEEEec
Q 020454 291 KLL-GCFIGK-CSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 291 ~~~-~~~~~~-~~~~v~~l~~~p~~~~l~s~s 320 (326)
+.. ..+... ..+.|..+.++|||..+|...
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEE
Confidence 322 122211 122899999999998777665
No 431
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.67 E-value=11 Score=33.24 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=43.7
Q ss_pred EEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 229 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
++|+++.-|-|++||--.. +.-.-+.+-...|..+..+.+|.+|++.+.. .+-+-|++
T Consensus 575 yIa~as~kGDirLyDRig~-rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 575 YIAAASRKGDIRLYDRIGK-RAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred eEEEecCCCceeeehhhcc-hhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 9999999999999995422 2223444556778888899999999877765 67777765
No 432
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.66 E-value=6.8 Score=34.65 Aligned_cols=81 Identities=7% Similarity=-0.102 Sum_probs=50.6
Q ss_pred ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC--------Cc-e--eEEe------e--cCCceEEEEecCCC---Ce
Q 020454 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--------RP-V--MSFD------F--RETPIKAVAEEPDS---FN 272 (326)
Q Consensus 215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~--------~~-~--~~~~------~--~~~~i~~v~~s~~~---~~ 272 (326)
.|..+..++ .|..++-.+.+|.+.++=.+... ++ + +++. . ..-.+..++|+|+. ..
T Consensus 105 eV~~vl~s~--~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSP--TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecC--CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 456666665 56678888888977766533221 11 1 1111 0 11145677899984 67
Q ss_pred EEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 273 IYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 273 l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
+..-+.|+.|++||+...+.++...
T Consensus 183 L~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred EEEEecCcEEEEEecCCcchhhccC
Confidence 8888899999999998766554433
No 433
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.45 E-value=9.1 Score=31.74 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=72.3
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i 241 (326)
...+..+...+++++++++.......-||-- +..+...+.. ....|.++.|.|+ +.+.+ ....|.|+.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~~~~r~-------~~~riq~~gf~~~--~~lw~-~~~Gg~~~~ 211 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQPHNRN-------SSRRIQSMGFSPD--GNLWM-LARGGQIQF 211 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE---------SSS-EEEEEE-TT--S-EEE-EETTTEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCC--CccceEEccC-------ccceehhceecCC--CCEEE-EeCCcEEEE
Confidence 4568888889999999998777777778743 2222211111 1246889999984 43444 448899988
Q ss_pred EeCCCC----CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc--eecceEEEEEECCCCCE
Q 020454 242 YDTSAQ----RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG--KCSGSIRSIARHPTLPI 315 (326)
Q Consensus 242 wd~~~~----~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~--~~~~~v~~l~~~p~~~~ 315 (326)
=+.... .+++.........+..++|.+++...++|+. |.+ +.....|+-=.+.+. ........|.|.+..+-
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~g 289 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKG 289 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEE
T ss_pred ccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCce
Confidence 872211 0111111123345889999988776666554 433 334455554444432 12445778888755433
Q ss_pred EEEeccCcc
Q 020454 316 IASCGFLEA 324 (326)
Q Consensus 316 l~s~s~D~~ 324 (326)
+..|.||.
T Consensus 290 -f~lG~~G~ 297 (302)
T PF14870_consen 290 -FVLGQDGV 297 (302)
T ss_dssp -EEE-STTE
T ss_pred -EEECCCcE
Confidence 34455654
No 434
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.19 E-value=9 Score=31.26 Aligned_cols=196 Identities=12% Similarity=0.130 Sum_probs=107.5
Q ss_pred CCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC
Q 020454 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG 183 (326)
Q Consensus 104 ~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 183 (326)
..+.++.+.+ ++++|++......-.++= .... ..++...+..-.....+.+..+++++++--.+
T Consensus 86 ~nvS~LTynp--------~~rtLFav~n~p~~iVEl-t~~G-------dlirtiPL~g~~DpE~Ieyig~n~fvi~dER~ 149 (316)
T COG3204 86 ANVSSLTYNP--------DTRTLFAVTNKPAAIVEL-TKEG-------DLIRTIPLTGFSDPETIEYIGGNQFVIVDERD 149 (316)
T ss_pred ccccceeeCC--------CcceEEEecCCCceEEEE-ecCC-------ceEEEecccccCChhHeEEecCCEEEEEehhc
Confidence 4588888755 567788777776655442 2211 13444333333445567777777888887788
Q ss_pred CeEEEEECCCceeeeeecCCCCCCCCcCC-CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce--eEEe-----
Q 020454 184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFT-PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV--MSFD----- 255 (326)
Q Consensus 184 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~----- 255 (326)
+.+.++.+.....+...+......-.... ....-+++|.|.+ + .|+..-.-.-+.||........+ ....
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~ 227 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-H-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD 227 (316)
T ss_pred ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-c-eEEEEEccCCcEEEEEecCCcccccccccCcccc
Confidence 88988887765433332221000000000 2345688999853 3 55665555656666654321111 1110
Q ss_pred --ecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEc---ce--e---cceEEEEEECCCCCEEEE
Q 020454 256 --FRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFI---GK--C---SGSIRSIARHPTLPIIAS 318 (326)
Q Consensus 256 --~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~---~~--~---~~~v~~l~~~p~~~~l~s 318 (326)
..-..+.++.|++. +..++-+.+++.+.-.|.. |+++..+. +. . -..-..|+..++|.+-++
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 11235777888865 6677778888888888876 44333322 11 0 112446788877764443
No 435
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.15 E-value=1.3 Score=41.56 Aligned_cols=172 Identities=12% Similarity=0.103 Sum_probs=88.8
Q ss_pred CCCCCCCeeeeeecCcccEEEEEecCCcCCCc-ceeeecc--CCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc
Q 020454 8 ECPGCPPLRALTFDSLGLIKVIEARGEHGGVP-KVVERWG--DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN 84 (326)
Q Consensus 8 ~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 84 (326)
....||..+ .+-|.+-||++.--..++. .+..... .......++++-+.... -++..+-.+|+|++.+..+
T Consensus 141 ah~~~pk~~----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~--~~ic~~~~~~~i~lL~~~r 214 (1283)
T KOG1916|consen 141 AHTKCPKGR----RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNK--VYICYGLKGGEIRLLNINR 214 (1283)
T ss_pred cccCChHHH----HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccccc--ceeeeccCCCceeEeeech
Confidence 334566655 6668888999753211111 1111111 12233455555554443 3788899999999998854
Q ss_pred cceeeeecccCCCCCCCCCCCeeeeeccccccc---ccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccC
Q 020454 85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQRE---ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA 161 (326)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~---~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~ 161 (326)
... ..+. .|...++.++++...-. ..+.++..++....||.+.+|.+-..+. ..-..+..|+...
T Consensus 215 a~~-~l~r--------sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~---~~~rclhewkphd 282 (1283)
T KOG1916|consen 215 ALR-SLFR--------SHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGK---IVHRCLHEWKPHD 282 (1283)
T ss_pred HHH-HHHH--------hcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecc---ccHhhhhccCCCC
Confidence 433 2222 34445555555543220 1133556677777888887776543221 1123445566655
Q ss_pred CCceEEEEEcCCC---------CEEEEecC-CCeEEEEECCCceee
Q 020454 162 SGTIAFSKVDISE---------KFSLFGGK-GVEVNVWDLDKCEKI 197 (326)
Q Consensus 162 ~~~v~~~~~~~~~---------~~l~sg~~-d~~i~iwd~~~~~~~ 197 (326)
+.+-.|.-++.+. .++++++. +..+++|....-+++
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 4444444455432 23444443 344788876554443
No 436
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=89.64 E-value=1.1 Score=22.69 Aligned_cols=26 Identities=31% Similarity=0.664 Sum_probs=21.8
Q ss_pred CeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454 271 FNIYIGNGSGDLASVDIRTGKLLGCF 296 (326)
Q Consensus 271 ~~l~~g~~dg~v~iwd~~~~~~~~~~ 296 (326)
..+++++.+|.++.+|.++|+.+.++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36788899999999999999887654
No 437
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=89.46 E-value=1.3 Score=23.45 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=23.5
Q ss_pred eEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454 272 NIYIGNGSGDLASVDIRTGKLLGCFIG 298 (326)
Q Consensus 272 ~l~~g~~dg~v~iwd~~~~~~~~~~~~ 298 (326)
.+++++.+|.|+-+|.++|+.+-+++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466779999999999999999988763
No 438
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.45 E-value=2.8 Score=32.94 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=47.0
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC------cCCCCceeeeEEeecCCCcEEEEEeCCC
Q 020454 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG------IFTPTWFTSAAFLSIDDHRKFVAGTNDH 237 (326)
Q Consensus 164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~p~~~~~~l~~~~~dg 237 (326)
++..+. .++++|++-..+|.+++||+.+++.+........ .+. -.....|..+.... +|.-+++-+ +|
T Consensus 14 ~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~p-ll~~~~~~~~~~~~~i~~~~lt~--~G~PiV~ls-ng 87 (219)
T PF07569_consen 14 PVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAP-LLNSSPVSDKSSSPNITSCSLTS--NGVPIVTLS-NG 87 (219)
T ss_pred ceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHH-HhcccccccCCCCCcEEEEEEcC--CCCEEEEEe-CC
Confidence 344443 3678888889999999999999876554311100 000 02234566666663 554555544 57
Q ss_pred eEEEEeCCC
Q 020454 238 QVRLYDTSA 246 (326)
Q Consensus 238 ~v~iwd~~~ 246 (326)
..+.|+..-
T Consensus 88 ~~y~y~~~L 96 (219)
T PF07569_consen 88 DSYSYSPDL 96 (219)
T ss_pred CEEEecccc
Confidence 788888663
No 439
>PHA03098 kelch-like protein; Provisional
Probab=89.15 E-value=17 Score=33.03 Aligned_cols=135 Identities=14% Similarity=0.066 Sum_probs=62.6
Q ss_pred CCCEEEEecCC-----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC------CeEEE
Q 020454 173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRL 241 (326)
Q Consensus 173 ~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d------g~v~i 241 (326)
++++++.||.+ ..+..||..+.+-... .. +..+..-.+++.. ++++++.|+.+ ..+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~-------lp~~r~~~~~~~~---~~~iYv~GG~~~~~~~~~~v~~ 410 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREE-PP-------LIFPRYNPCVVNV---NNLIYVIGGISKNDELLKTVEC 410 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeC-CC-------cCcCCccceEEEE---CCEEEEECCcCCCCcccceEEE
Confidence 56777888876 3466777765432211 11 1111111122222 45566666632 46888
Q ss_pred EeCCCCCC-ceeEEeecCCceEEEEecCCCCeEEEEcCC--------CcEEEEECCCCeEEEE--EcceecceEEEEEEC
Q 020454 242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS--------GDLASVDIRTGKLLGC--FIGKCSGSIRSIARH 310 (326)
Q Consensus 242 wd~~~~~~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d--------g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~ 310 (326)
||+.+..- .+..+.........+. .++...+.|+.+ ..+.+||..+++.... +... ......+.+
T Consensus 411 yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~~- 486 (534)
T PHA03098 411 FSLNTNKWSKGSPLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCIF- 486 (534)
T ss_pred EeCCCCeeeecCCCCccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEEE-
Confidence 99875411 1111111111112222 245556666543 2388999887654321 1111 111112222
Q ss_pred CCCCEEEEeccCc
Q 020454 311 PTLPIIASCGFLE 323 (326)
Q Consensus 311 p~~~~l~s~s~D~ 323 (326)
++.+++.||.++
T Consensus 487 -~~~iyv~GG~~~ 498 (534)
T PHA03098 487 -NNKIYVVGGDKY 498 (534)
T ss_pred -CCEEEEEcCCcC
Confidence 667777777653
No 440
>PHA03098 kelch-like protein; Provisional
Probab=89.09 E-value=17 Score=33.00 Aligned_cols=107 Identities=16% Similarity=0.244 Sum_probs=52.4
Q ss_pred CCCEEEEecCC------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC--------Ce
Q 020454 173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--------HQ 238 (326)
Q Consensus 173 ~~~~l~sg~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d--------g~ 238 (326)
++++.+.||.+ +.+..||..+.+-... ...+ .+..-.++... ++.+++.|+.+ ..
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~ 457 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKG-SPLP-------ISHYGGCAIYH---DGKIYVIGGISYIDNIKVYNI 457 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeec-CCCC-------ccccCceEEEE---CCEEEEECCccCCCCCcccce
Confidence 56777777742 4578888876542211 1111 01111122222 44466666542 23
Q ss_pred EEEEeCCCCCC-ceeEEeecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeE
Q 020454 239 VRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKL 292 (326)
Q Consensus 239 v~iwd~~~~~~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~ 292 (326)
+.+||+.+.+- .+............+.+ +++.++.|+.+ +.+.+||..+.+.
T Consensus 458 v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 458 VESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 88899875421 11111111111122223 56666677654 4688899887654
No 441
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.01 E-value=1.2 Score=41.65 Aligned_cols=159 Identities=10% Similarity=0.069 Sum_probs=77.9
Q ss_pred ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE---cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCC
Q 020454 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV---DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (326)
Q Consensus 130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~ 206 (326)
-.-|.+++|+++.-+.... ..-.++.... -+..+.-+.| -++.-++..+-.++.|++..+.+... ..+..|...
T Consensus 150 ~~vg~lfVy~vd~l~G~iq-~~l~v~~~~p-~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~ 226 (1283)
T KOG1916|consen 150 RLVGELFVYDVDVLQGEIQ-PQLEVTPITP-YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQR 226 (1283)
T ss_pred HHhhhhheeehHhhccccc-cceEEeecCc-CCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCC
Confidence 3447788999875221000 0001111111 1222333333 34567777788888888866654332 111223221
Q ss_pred CCCcC--CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC----CceeEEeecCC-ceEEEEecCC---------C
Q 020454 207 SLGIF--TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMSFDFRET-PIKAVAEEPD---------S 270 (326)
Q Consensus 207 ~~~~~--~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~-~i~~v~~s~~---------~ 270 (326)
..++. ....+.--..+| ||..|+..+.||.++.|.+.-.. ++++.++.|+. +-.|.-++.+ -
T Consensus 227 ~~d~a~~~~g~~~l~~lSp--DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w 304 (1283)
T KOG1916|consen 227 VTDMAFFAEGVLKLASLSP--DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKW 304 (1283)
T ss_pred cccHHHHhhchhhheeeCC--CCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcccee
Confidence 11110 000000011355 78899999999999988865211 34556666652 3222223221 1
Q ss_pred CeEEEE-cCCCcEEEEECCCCeEE
Q 020454 271 FNIYIG-NGSGDLASVDIRTGKLL 293 (326)
Q Consensus 271 ~~l~~g-~~dg~v~iwd~~~~~~~ 293 (326)
.+++++ ..+..+++|.-...+++
T Consensus 305 ~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 305 VLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred EEEEecccCCcceeEeeccchhhh
Confidence 234444 44566899987766655
No 442
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.82 E-value=8.9 Score=37.86 Aligned_cols=177 Identities=13% Similarity=0.179 Sum_probs=87.7
Q ss_pred EecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccc
Q 020454 71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS 150 (326)
Q Consensus 71 g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~ 150 (326)
-+.|..+.+|+.+++.-...+..+ ...|..+....+.+..=-+.-..++....--.|.++-+...+...+.
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~--------shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~- 165 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGL--------SHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL- 165 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccch--------hhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc-
Confidence 466889999999875544555432 23454444433221000001234555555566677766543321111
Q ss_pred cceEEEEEccC-CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454 151 CSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (326)
Q Consensus 151 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 229 (326)
.--...+.+.. +..|.++....+|+.+.+| .|| .+|.+. ++... .|-.. ...+.
T Consensus 166 ~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~-----Yq~~~-----------gWf~~------rc~Ki 220 (1311)
T KOG1900|consen 166 SIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELV-----YQAED-----------GWFGS------RCRKI 220 (1311)
T ss_pred cccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEE-----EeccC-----------chhhc------ccccc
Confidence 11111133332 4568888877788887664 555 566642 11110 00000 00000
Q ss_pred EEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 230 FVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 230 l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
-.+.+.-..+ +. .+.++. .+..+|..++....-..+++-+..|+|.+||+..
T Consensus 221 clt~s~ls~l----vP----s~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 221 CLTKSVLSSL----VP----SLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cCchhHHHHh----hh----hhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 0111100000 00 012222 4566888888877777788889999999999875
No 443
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.27 E-value=18 Score=32.05 Aligned_cols=105 Identities=11% Similarity=0.062 Sum_probs=57.4
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-ceeEEe-----ecCCceEEEEecCCC------CeEEEEc------
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFD-----FRETPIKAVAEEPDS------FNIYIGN------ 277 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~-----~~~~~i~~v~~s~~~------~~l~~g~------ 277 (326)
...++|.| ++++|++--..|+|++++...... .+..+. ..+.....|+++|+- .+|+...
T Consensus 32 Pw~maflP--DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 32 PWALLWGP--DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred ceEEEEcC--CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 34778888 564555544469999998654321 121111 135678999999874 3455432
Q ss_pred ----CCCcEEEEECCCC-------eE-EEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454 278 ----GSGDLASVDIRTG-------KL-LGCFIGKCSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 278 ----~dg~v~iwd~~~~-------~~-~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
....|.-|.+... +. +..++......-..|+|.||+.+.++.|.-
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234544554321 11 222221001234578899999887777654
No 444
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.25 E-value=7.4 Score=27.65 Aligned_cols=122 Identities=12% Similarity=0.071 Sum_probs=66.8
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe---ecCCCcEEEEEeCCCeEEEEeCC
Q 020454 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL---SIDDHRKFVAGTNDHQVRLYDTS 245 (326)
Q Consensus 169 ~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~~l~~~~~dg~v~iwd~~ 245 (326)
+|+.....|+.++.-+.|.|++........... ..+...+.....|++++-. |......|+.|+ ...+..||+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~--~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQ--DSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccc--cCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 455555677888888899999876433221111 1111112223446666544 344455777777 5678999998
Q ss_pred CCCCceeEEeecCCceEEEEec---C-CCCeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454 246 AQRRPVMSFDFRETPIKAVAEE---P-DSFNIYIGNGSGDLASVDIRTGKLLGCF 296 (326)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~v~~s---~-~~~~l~~g~~dg~v~iwd~~~~~~~~~~ 296 (326)
.... +...+.+ ..+.++.+- . ....+++ +-+..|.=||....+...+.
T Consensus 82 ~N~d-~Fyke~~-DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSD-LFYKEVP-DGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCch-hhhhhCc-cceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEEe
Confidence 6632 3333333 446666552 2 2334444 44557777877665555443
No 445
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.06 E-value=17 Score=31.71 Aligned_cols=199 Identities=11% Similarity=0.040 Sum_probs=107.9
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
..++.+=+.||.+.+|+-+.-.+...+..+..| +|+.-.. ..+.+++++.+..+..|.+..-.
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llP------gPl~Y~~-----------~tDsfvt~sss~~l~~Yky~~La 207 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLP------GPLCYCP-----------RTDSFVTASSSWTLECYKYQDLA 207 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCC------cCeEEee-----------cCCEEEEecCceeEEEecHHHhh
Confidence 568999999999999998655544444433222 5665333 45689999999999999876432
Q ss_pred cccc-------------cccceEEEEEccCCCceEEEEEcC---CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454 145 VSAE-------------SSCSTVKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (326)
Q Consensus 145 ~~~~-------------~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 208 (326)
..+. ......--|...-++.+..+..-. ....+++-+. ..+.+.+- +|+..+..+-.- ...
T Consensus 208 ~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~~-~G~l~~~krLd~-~p~ 284 (418)
T PF14727_consen 208 SASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFCLKD-NGSLRFQKRLDY-NPS 284 (418)
T ss_pred hccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEEEcC-CCeEEEEEecCC-cee
Confidence 2211 122233456666666666665433 2233333333 35656554 344443322110 000
Q ss_pred CcCCCCceeeeEEeecC-CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCce--EEEEecCCCCeEEEEcCCCcEEEE
Q 020454 209 GIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI--KAVAEEPDSFNIYIGNGSGDLASV 285 (326)
Q Consensus 209 ~~~~~~~v~~~~~~p~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i--~~v~~s~~~~~l~~g~~dg~v~iw 285 (326)
. -.++.+...... .+..+++++.++++.||.=.+ .+..-+....+| ....|..-...|++-+.+|.+.+-
T Consensus 285 ~----~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~---L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~ 357 (418)
T PF14727_consen 285 C----FCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT---LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVS 357 (418)
T ss_pred e----EEEEEeecccCCCCceEEEEEecCCeEEEEeCCe---EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEE
Confidence 0 001111111111 122588999999999996332 233333332332 222232334578888899999988
Q ss_pred ECCCC
Q 020454 286 DIRTG 290 (326)
Q Consensus 286 d~~~~ 290 (326)
-+-|.
T Consensus 358 YLGTd 362 (418)
T PF14727_consen 358 YLGTD 362 (418)
T ss_pred EeCCC
Confidence 77664
No 446
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.62 E-value=17 Score=31.18 Aligned_cols=139 Identities=10% Similarity=0.110 Sum_probs=72.8
Q ss_pred CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE--EEEEe-CC---CeEEEEeCC
Q 020454 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK--FVAGT-ND---HQVRLYDTS 245 (326)
Q Consensus 172 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~--l~~~~-~d---g~v~iwd~~ 245 (326)
|...+++...+++-+.+||+.... +..+.....+..++ ...+.+ .++. |++++ .+ .+|++|.+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~-lq~~~~Gr~NNVDv-----rygf~l----~g~~vDlavas~R~~g~n~l~~f~id 135 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE-LQSLPVGRPNNVDV-----RYGFPL----NGKTVDLAVASDRSDGRNSLRLFRID 135 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E-EEEE-SS-EEEEEE-----EEEEEE----TTEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcE-EEeecCCCcceeee-----ecceec----CCceEEEEEEecCcCCCCeEEEEEec
Confidence 345677777888999999997544 33332211111111 112111 2222 33433 32 479999766
Q ss_pred CCCCceeEEee-------cCCceEEEEe--cC-CCC-eEEEEcCCCcEEEEECC---CC----eEEEEEcceecceEEEE
Q 020454 246 AQRRPVMSFDF-------RETPIKAVAE--EP-DSF-NIYIGNGSGDLASVDIR---TG----KLLGCFIGKCSGSIRSI 307 (326)
Q Consensus 246 ~~~~~~~~~~~-------~~~~i~~v~~--s~-~~~-~l~~g~~dg~v~iwd~~---~~----~~~~~~~~~~~~~v~~l 307 (326)
.....+..+.. ....++.+|+ +| +|. ++++...+|.+..|.+. .+ +++++|.. ...+..+
T Consensus 136 ~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EGC 213 (381)
T PF02333_consen 136 PDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEGC 213 (381)
T ss_dssp TTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEE
T ss_pred CCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceEE
Confidence 33223333321 1234667776 33 354 56688889998888775 23 45677763 4567778
Q ss_pred EECCCCCEEEEeccC
Q 020454 308 ARHPTLPIIASCGFL 322 (326)
Q Consensus 308 ~~~p~~~~l~s~s~D 322 (326)
+......+|..+-.|
T Consensus 214 VVDDe~g~LYvgEE~ 228 (381)
T PF02333_consen 214 VVDDETGRLYVGEED 228 (381)
T ss_dssp EEETTTTEEEEEETT
T ss_pred EEecccCCEEEecCc
Confidence 787776677766544
No 447
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.41 E-value=15 Score=30.29 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=39.4
Q ss_pred CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEE-ecCCcEEEEecc
Q 020454 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA-RKNGLTDILNPL 83 (326)
Q Consensus 14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~dg~i~i~~~~ 83 (326)
+.+++.++++|.|.-|...-....+......+.+.........+++.....+.+|..+ -.+++|.+||-.
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 4678999999999999965432211111122322222333334555544344445444 567999999864
No 448
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.31 E-value=1.9 Score=21.73 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.6
Q ss_pred CEEEEecCCCeEEEEECCCceeeeee
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTA 200 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~ 200 (326)
..++.++.++.+..+|.++++.+++.
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 35777889999999999999887763
No 449
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.10 E-value=4.2 Score=31.46 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=39.8
Q ss_pred CeEEEEcCCCcEEEEECC--CCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454 271 FNIYIGNGSGDLASVDIR--TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 271 ~~l~~g~~dg~v~iwd~~--~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
..|+.+...+.|.+|++. ..+++.+|.. -+.|..+.++..|.+|+|--.+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~GDYlvTlE~k~ 81 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAGDYLVTLEEKN 81 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEeccccceEEEEEeec
Confidence 456555777789999998 3456777873 68999999999999999865443
No 450
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=86.98 E-value=23 Score=32.04 Aligned_cols=104 Identities=10% Similarity=0.076 Sum_probs=64.6
Q ss_pred CceeeeEEeecCC--CcEEEEEeCCCeEEEEeCCCC--C--CceeEEe--ec-CCc--eEEEEecCCCCeEEEEcCCCcE
Q 020454 214 TWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQ--R--RPVMSFD--FR-ETP--IKAVAEEPDSFNIYIGNGSGDL 282 (326)
Q Consensus 214 ~~v~~~~~~p~~~--~~~l~~~~~dg~v~iwd~~~~--~--~~~~~~~--~~-~~~--i~~v~~s~~~~~l~~g~~dg~v 282 (326)
..|.++.|.|... .-.+++....+.|.+|.+-.. + +.+.+-. .. ..+ -....|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 4588999988521 114555566889999996521 1 1111111 11 111 1345799999888877666555
Q ss_pred EEEECCCC--eEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454 283 ASVDIRTG--KLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 283 ~iwd~~~~--~~~~~~~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
.+++++.. +....+++ .+.|.+.+|.+||+.|+.+
T Consensus 137 V~~sV~~d~srVkaDi~~--~G~IhCACWT~DG~RLVVA 173 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKT--SGLIHCACWTKDGQRLVVA 173 (671)
T ss_pred EeeeeeeCCceEEEeccC--CceEEEEEecCcCCEEEEE
Confidence 66776643 33344543 7889999999999876654
No 451
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.86 E-value=18 Score=30.54 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=85.6
Q ss_pred CCeeeeecccccccccCCCCceEEEEecCCc------EEEEEccccccc-cc-cccceEEEEEcc------CCCceEEEE
Q 020454 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGK------ASMRSIEVTKVS-AE-SSCSTVKSWNVC------ASGTIAFSK 169 (326)
Q Consensus 104 ~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~------v~i~~~~~~~~~-~~-~~~~~~~~~~~~------~~~~v~~~~ 169 (326)
+.+.++.+.+ .++.+++.+.+|. ++...+...... .. .....+.+-+.. ..-...+|+
T Consensus 20 GGlSgl~~~~--------~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~ 91 (326)
T PF13449_consen 20 GGLSGLDYDP--------DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIA 91 (326)
T ss_pred CcEeeEEEeC--------CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeE
Confidence 5567777643 4567888888888 666665542110 00 001111111110 001345778
Q ss_pred EcCCCCEEEEecCC------CeEEEEECCCceeeeeecCCCCC------CCCcCCCCceeeeEEeecCCCcEEEEEeC--
Q 020454 170 VDISEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKN------SLGIFTPTWFTSAAFLSIDDHRKFVAGTN-- 235 (326)
Q Consensus 170 ~~~~~~~l~sg~~d------~~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-- 235 (326)
+.+++.++++.=.+ ..|..++.. ++....+.-...- ....+.....-+++++| +++.|+++..
T Consensus 92 ~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~--dG~~l~~~~E~~ 168 (326)
T PF13449_consen 92 VPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP--DGRTLFAAMESP 168 (326)
T ss_pred EecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC--CCCEEEEEECcc
Confidence 87778888776566 678888876 5554433111100 02233445678899988 5655555432
Q ss_pred ---CC--e-------EEE--EeCCCCCCceeEEee---------cCCceEEEEecCCCCeEE
Q 020454 236 ---DH--Q-------VRL--YDTSAQRRPVMSFDF---------RETPIKAVAEEPDSFNIY 274 (326)
Q Consensus 236 ---dg--~-------v~i--wd~~~~~~~~~~~~~---------~~~~i~~v~~s~~~~~l~ 274 (326)
|+ . +++ ||..+...+...+.. ....++.+.+-+++++++
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 22 1 444 455442223333321 346788889989988776
No 452
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.84 E-value=4.8 Score=36.69 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=43.5
Q ss_pred CCceEEEEecCCcEEEEEccccc---c-ccc--ccc--------ceEEEE--Ec-cCCCceEEEEEcC----CCCEEEEe
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTK---V-SAE--SSC--------STVKSW--NV-CASGTIAFSKVDI----SEKFSLFG 180 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~---~-~~~--~~~--------~~~~~~--~~-~~~~~v~~~~~~~----~~~~l~sg 180 (326)
+...++.+..||.+......... . ... ..+ +.+..+ .. ........+++++ +..+|++-
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 34578888889988877766411 0 000 000 000000 00 0122355566666 66899999
Q ss_pred cCCCeEEEEECCCceeeeee
Q 020454 181 GKGVEVNVWDLDKCEKIWTA 200 (326)
Q Consensus 181 ~~d~~i~iwd~~~~~~~~~~ 200 (326)
+.|+++|+||+.+++++...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEe
Confidence 99999999999999886554
No 453
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=85.44 E-value=15 Score=31.58 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=54.8
Q ss_pred eeeeEEeecCCCcEEEEEe-----------CCC-eEEEEeCCCCC-Cc--eeEEeecCCceEEEEecCCCCeEEEEcCCC
Q 020454 216 FTSAAFLSIDDHRKFVAGT-----------NDH-QVRLYDTSAQR-RP--VMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~-----------~dg-~v~iwd~~~~~-~~--~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg 280 (326)
...++|.+ +++++++-. ..+ .|.+++-..+. +. ...+...-.....+++.++| |++++...
T Consensus 16 P~~ia~d~--~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 16 PIAVCFDE--RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CceeeECC--CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 44677766 565555542 223 77777654221 11 22333333456888998888 55555554
Q ss_pred cEEEEECCC-------CeEE-EEEcce---ecceEEEEEECCCCCEEEEec
Q 020454 281 DLASVDIRT-------GKLL-GCFIGK---CSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 281 ~v~iwd~~~-------~~~~-~~~~~~---~~~~v~~l~~~p~~~~l~s~s 320 (326)
..++.|... .+.+ ..+... .......++|.|++.+.++-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 333445432 1122 223321 134578999999998777666
No 454
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=85.34 E-value=22 Score=30.11 Aligned_cols=107 Identities=11% Similarity=-0.076 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCcee---eeeecCCCCCCCCcCCCCceeeeEEeec--CCCcEEEEEeCC--
Q 020454 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSI--DDHRKFVAGTND-- 236 (326)
Q Consensus 164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~~l~~~~~d-- 236 (326)
....|++.|+++++++ -..|.|++++ ..+.. +...... ..........++++|. .++.+.++-+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v-----~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~ 75 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEV-----FADGERGLLGIAFHPDFASNGYLYVYYTNADE 75 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTT-----BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccc-----cccccCCcccceeccccCCCCEEEEEEEcccC
Confidence 3568999999988765 5699999999 33332 2222211 1112245778999983 234333333321
Q ss_pred ----C--eEEEEeCCCCCCc------e-eEEee---cCCceEEEEecCCCCeEEEEc
Q 020454 237 ----H--QVRLYDTSAQRRP------V-MSFDF---RETPIKAVAEEPDSFNIYIGN 277 (326)
Q Consensus 237 ----g--~v~iwd~~~~~~~------~-~~~~~---~~~~i~~v~~s~~~~~l~~g~ 277 (326)
. .|.-|........ + ..... ....-..|+|.|||.+.++-+
T Consensus 76 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 76 DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 2 3333333222111 1 11111 234557799999996555433
No 455
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.21 E-value=14 Score=27.78 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=25.4
Q ss_pred CceEEEEecCCC------CeEEEEcCCCcEEEEECCC
Q 020454 259 TPIKAVAEEPDS------FNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 259 ~~i~~v~~s~~~------~~l~~g~~dg~v~iwd~~~ 289 (326)
..+..++|||.| -.|++-+.+|.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999953 3677999999999998763
No 456
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.84 E-value=29 Score=34.33 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.7
Q ss_pred cCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454 267 EPDSFNIYIGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 267 s~~~~~l~~g~~dg~v~iwd~~~~~~ 292 (326)
++++..++++..||.+.+||...++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 77899999999999999999998755
No 457
>PHA02790 Kelch-like protein; Provisional
Probab=84.46 E-value=27 Score=31.33 Aligned_cols=132 Identities=11% Similarity=0.064 Sum_probs=62.8
Q ss_pred CCCEEEEecCC--CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC---eEEEEeCCCC
Q 020454 173 SEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQ 247 (326)
Q Consensus 173 ~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg---~v~iwd~~~~ 247 (326)
++.+.+.||.+ ..+..||..+++-... .. +..+..-.+++.. ++++.+.|+.++ .+..||+++.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~-~~-------l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNM-PS-------LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEEC-CC-------CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCC
Confidence 56777888864 3477787654432111 11 1111111122222 455777777553 4778888754
Q ss_pred CC-ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE--EcceecceEEEEEECCCCCEEEEeccCc
Q 020454 248 RR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 248 ~~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
.- .+............+++ +++..+.| |.+.+||.++++.... ++.. .... +++. -++++.+.||.++
T Consensus 387 ~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~-r~~~-~~~v-~~~~IYviGG~~~ 457 (480)
T PHA02790 387 QWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCESSNTWTLIDDPIYP-RDNP-ELII-VDNKLLLIGGFYR 457 (480)
T ss_pred EEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecCCCCcEeEcCCCCCC-cccc-EEEE-ECCEEEEECCcCC
Confidence 10 00001111111122222 45555566 4578899987755421 2211 1122 2222 3677888888763
No 458
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.33 E-value=17 Score=28.21 Aligned_cols=110 Identities=14% Similarity=0.050 Sum_probs=62.9
Q ss_pred eEEEEecCCcEEEEecccc--ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC------cEEEE
Q 020454 67 LLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG------KASMR 138 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g------~v~i~ 138 (326)
.|+++.....|.+|++.+. +....+... +.|..+.+.. .++++++--++. .+++|
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---------~~V~~l~y~~--------~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV---------GRVLQLVYSE--------AGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcch---------hheeEEEecc--------ccceEEEEEeecCCccceEEEEE
Confidence 4666688888999998733 334444442 6777777655 567888765443 33443
Q ss_pred ---Eccccc-c----------cccc----ccceEEEEEccCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCce
Q 020454 139 ---SIEVTK-V----------SAES----SCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCE 195 (326)
Q Consensus 139 ---~~~~~~-~----------~~~~----~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~ 195 (326)
+....+ . ..+. ....+.+.++.-..+..+++.-|- |+++ +|+ ++.+.+|.+....
T Consensus 93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQT 166 (215)
T ss_pred EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEE
Confidence 222111 0 0000 112344555555667778888775 4554 544 4589999886543
No 459
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=84.24 E-value=3.7 Score=21.72 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=23.4
Q ss_pred EEEEecCCCeEEEEECCCceeeeeecCC
Q 020454 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (326)
Q Consensus 176 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~ 203 (326)
.+..+..++.|.-.|.++++.++..+..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 3556699999999999999999987653
No 460
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=83.82 E-value=5.7 Score=31.86 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=43.8
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEE
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL 80 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~ 80 (326)
-.|+.|+++|.|.|.|.... .+..++.-+.-+..+.+.+..+..+. .+++++.||.|.+.
T Consensus 196 scLViGTE~~~i~iLd~~af-----~il~~~~lpsvPv~i~~~G~~devdy-RI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAF-----TILKQVQLPSVPVFISVSGQYDEVDY-RIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhh-----eeEEEEecCCCceEEEEEeeeeccce-EEEEEeCCCEEEEE
Confidence 67999999999999998876 56666666666666655554432222 58899999988764
No 461
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.60 E-value=20 Score=31.35 Aligned_cols=100 Identities=10% Similarity=0.068 Sum_probs=63.6
Q ss_pred CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC---CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
.+.|.++.|++ |.+.+|+--.+.+|.+++..... ....+-+.....|....|+.+ .-+|.-...| +.+|-...
T Consensus 66 ~G~I~SIkFSl--DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 66 KGEIKSIKFSL--DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred CCceeEEEecc--CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 35688999998 56689999999999999975331 112233344556888899765 4555434443 55554432
Q ss_pred -CeEEEEEcceecceEEEEEECCCCCEEE
Q 020454 290 -GKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (326)
Q Consensus 290 -~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 317 (326)
.+.++..+.| .-.|+=..|+++.+.+.
T Consensus 142 ekrslRlVks~-~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 142 EKRSLRLVKSH-NLNVNWYMYCPETAVIL 169 (657)
T ss_pred hhhhhhhhhhc-ccCccEEEEccccceEe
Confidence 2233444555 66788888888766443
No 462
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=83.24 E-value=25 Score=29.11 Aligned_cols=261 Identities=11% Similarity=0.039 Sum_probs=124.6
Q ss_pred EeeeCCCCCeEEEEecCCcEEEEeccc----cceeeeecccCCCCCCCCCCCeeeeecccccccccC----CCCceEEEE
Q 020454 58 SIDDSQNDPLLAVARKNGLTDILNPLN----GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS----SRSRTLLTC 129 (326)
Q Consensus 58 ~~~~~~~~~~l~~g~~dg~i~i~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~----~~~~~l~~~ 129 (326)
....++.+.+-++....+...+||... +......-.+..+.........+++.+-....-.-. .....++.+
T Consensus 27 Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~ 106 (336)
T TIGR03118 27 GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV 106 (336)
T ss_pred eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence 333444555666667778999998851 111111111111111112244555554221110000 012357889
Q ss_pred ecCCcEEEEEccccccccccccceEEEEEccCCCceE-EEEEcC--CCCEEEE-ecCCCeEEEEECCCceeeeeecCCCC
Q 020454 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA-FSKVDI--SEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPK 205 (326)
Q Consensus 130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~--~~~~l~s-g~~d~~i~iwd~~~~~~~~~~~~~~~ 205 (326)
+++|+|.-|.-...... ....+.+.+......|+ .+++.. .+++|.. =-..++|.+||-.-.+.... .....
T Consensus 107 tEdGTisaW~p~v~~t~---~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~D 182 (336)
T TIGR03118 107 TEDGTLSGWAPALGTTR---MTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFID 182 (336)
T ss_pred eCCceEEeecCcCCccc---ccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCccC
Confidence 99999999984322110 00112223322223332 344443 2445443 34668888888543322110 00000
Q ss_pred CCCC-cCCCCceee------eEEeec-CCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec--CCceEEEEecC------C
Q 020454 206 NSLG-IFTPTWFTS------AAFLSI-DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEP------D 269 (326)
Q Consensus 206 ~~~~-~~~~~~v~~------~~~~p~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~~i~~v~~s~------~ 269 (326)
..+- -..|-.|.. |.|... .+.+.=+.+-.-|.|-+||+.- +.++.+... -..-+.|+..| .
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G--~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG--QLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC--cEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 0000 001111111 112111 1111224445567999999883 345555322 12345566654 3
Q ss_pred CCeEEEEcCCCcEEEEECCCCeEEEEEccee-----cceEEEEEECC------CCCEEEEeccCcc
Q 020454 270 SFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-----SGSIRSIARHP------TLPIIASCGFLEA 324 (326)
Q Consensus 270 ~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~-----~~~v~~l~~~p------~~~~l~s~s~D~~ 324 (326)
+.+|+----||+|..||..+++.+..+.... ....+.|+|.. .+.+.++++-|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~de 326 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPDDE 326 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCCCc
Confidence 5566655569999999999998887776431 23567888874 2356667766644
No 463
>PRK10115 protease 2; Provisional
Probab=83.06 E-value=43 Score=31.72 Aligned_cols=110 Identities=6% Similarity=0.018 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCEEEEec-----CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-C--
Q 020454 165 IAFSKVDISEKFSLFGG-----KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D-- 236 (326)
Q Consensus 165 v~~~~~~~~~~~l~sg~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-d-- 236 (326)
+..+.++|++++|+.+- ....|++.|+.+++.+...-. .--..++|.++ ++.|+.... +
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-----------~~~~~~~w~~D--~~~~~y~~~~~~~ 195 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-----------NVEPSFVWAND--SWTFYYVRKHPVT 195 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-----------CcceEEEEeeC--CCEEEEEEecCCC
Confidence 66778999999887643 223488888876653221100 00135788874 334444332 2
Q ss_pred ---CeEEEEeCCCCC-CceeEEeecCCceE-EEEecCCCCeEEEEc---CCCcEEEEEC
Q 020454 237 ---HQVRLYDTSAQR-RPVMSFDFRETPIK-AVAEEPDSFNIYIGN---GSGDLASVDI 287 (326)
Q Consensus 237 ---g~v~iwd~~~~~-~~~~~~~~~~~~i~-~v~~s~~~~~l~~g~---~dg~v~iwd~ 287 (326)
..|+.+++.+.. +-...+...+.... .+..+.++++++..+ .++.+.+++.
T Consensus 196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 367778877652 11223333333333 333344787766433 3357888884
No 464
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=83.03 E-value=23 Score=33.48 Aligned_cols=155 Identities=10% Similarity=0.062 Sum_probs=81.7
Q ss_pred cCCCCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc
Q 020454 7 LECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD 86 (326)
Q Consensus 7 ~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~ 86 (326)
.+....|.-.+..|+++|.+.++.-..+ ..............+....+ .+ ... -+..|.-||++-.|-..-..
T Consensus 540 ~~~~as~~PTic~gtq~ssisissss~~-s~ke~~~~~~spe~~~v~~l--~~--ss~--Slgagl~dgt~a~y~rap~g 612 (925)
T KOG3522|consen 540 PDTQASPHPTICLGTQTSSISISSSSLD-SIKEVTSEPPSPEHESVKLL--LF--SSG--SLGAGLIDGTLAVYGRAPSG 612 (925)
T ss_pred cccccCCCCcccccCccceeEEeeccCC-cccceeccCCCCchhhhhhh--hc--ccc--ccccCccCCccccccCCCCC
Confidence 3444455677889999999999987632 22222222222222222211 11 111 15556667777666432111
Q ss_pred eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc----CC
Q 020454 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC----AS 162 (326)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~----~~ 162 (326)
. .+...+-....+..++.++.+. +.++.++.+|.+.++..... ++.|+.. +.
T Consensus 613 S---wd~ep~~~~~~g~lPvrsla~~-----------ed~~was~gG~V~vi~~tt~----------~~~~~leahqee~ 668 (925)
T KOG3522|consen 613 S---WDGEPNISIPTGSLPVRSLAFQ-----------EDFVWASEGGCVHVIPSTTF----------IRSWDLEAHQEEA 668 (925)
T ss_pred C---CCCCCccccccCCccccchhhh-----------hceeeeecCCceEEEechhc----------cccchhHHHHhhc
Confidence 0 0000000001333567766643 36888999999999986542 2333322 23
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCC
Q 020454 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDK 193 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 193 (326)
-.|++|....++-+++..+.| .+++++.++
T Consensus 669 ~~Vthm~~~~~gVwvafasG~-~~rlfhtet 698 (925)
T KOG3522|consen 669 HSVTHMLYLDNGVWVAFASGD-EERLFHTET 698 (925)
T ss_pred ceEEEEEeeCCceEEEEcCCC-EEEEecccc
Confidence 468888888777666654443 566666554
No 465
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.95 E-value=49 Score=32.35 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=39.5
Q ss_pred ee-eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCC-------CCeEEEEecCCcEEEE--eccc
Q 020454 15 LR-ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN-------DPLLAVARKNGLTDIL--NPLN 84 (326)
Q Consensus 15 ~~-l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~g~~dg~i~i~--~~~~ 84 (326)
.| +..++.++.+|+..+... .....++.+.-+....++++...+. .=+|.+|-.+|.+.-+ |.-+
T Consensus 600 srfla~a~~d~~vriisL~p~-----d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~ 674 (1205)
T KOG1898|consen 600 SRFLALASVDNMVRIISLDPS-----DCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVT 674 (1205)
T ss_pred cceeeeeccccceeEEEecCc-----ceEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEecccc
Confidence 55 777889999999998866 3333444433333333444332211 1267888888877655 3335
Q ss_pred cce
Q 020454 85 GDL 87 (326)
Q Consensus 85 ~~~ 87 (326)
|.+
T Consensus 675 G~l 677 (1205)
T KOG1898|consen 675 GQL 677 (1205)
T ss_pred cce
Confidence 544
No 466
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=82.90 E-value=46 Score=31.93 Aligned_cols=222 Identities=10% Similarity=0.042 Sum_probs=112.1
Q ss_pred eeeeeecCcccEEEEEecCCcCCCccee-eecc-CCCCCceEEEEEeeeCCCCCeEEEEecC---CcEEEEecc--cc--
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVV-ERWG-DPHSSNCVLAASIDDSQNDPLLAVARKN---GLTDILNPL--NG-- 85 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~g~~d---g~i~i~~~~--~~-- 85 (326)
.-+++-..+|.+++|=-+.. ....+.. .... -......+..+++....+++.+++++.+ +.|++|.+. -+
T Consensus 63 ~A~i~Vt~nG~l~l~yQ~~~-~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~ 141 (753)
T PF11635_consen 63 SACIAVTRNGLLKLWYQKPD-GQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAK 141 (753)
T ss_pred eEEEEEecCCeEEEEEEcCC-CccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCc
Confidence 56888999999999987432 1111111 0000 0123344555666655566555555444 889999653 11
Q ss_pred ------ceeeeecccCCCCC---C------------CCCCCeeeeecccccccccCCCCceEEEEec----CCcEEEEEc
Q 020454 86 ------DLRVAISNAGDSGA---Q------------PEDDGIVGLHLFKRQREESSSRSRTLLTCTT----KGKASMRSI 140 (326)
Q Consensus 86 ------~~~~~~~~~~~~~~---~------------~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~----~g~v~i~~~ 140 (326)
+....+...+.... + ..-..+.++.+...... ..+....+++.+. ...|.-|.+
T Consensus 142 ~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~-~~~~p~Ili~~~~~~~~~SiI~RweL 220 (753)
T PF11635_consen 142 PQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPD-KDSAPEILIVYSSPNTPSSIIERWEL 220 (753)
T ss_pred CccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCC-CCCCCeEEEEEEcCCCCCcEEEEEEE
Confidence 11111111100000 0 01135556666552211 1112333444332 346788988
Q ss_pred cccccc-------cc------cccceEEEEEc----cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee---
Q 020454 141 EVTKVS-------AE------SSCSTVKSWNV----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA--- 200 (326)
Q Consensus 141 ~~~~~~-------~~------~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~--- 200 (326)
...... .+ ........|.. .....|.++....-+.+++....||+|.++|-.+.+.+...
T Consensus 221 ~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~ 300 (753)
T PF11635_consen 221 REEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTN 300 (753)
T ss_pred EccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccc
Confidence 764320 01 11111122221 12345778888778889999999999999998887655443
Q ss_pred -cCC------CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454 201 -KPP------PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (326)
Q Consensus 201 -~~~------~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~ 240 (326)
... ......+.....+--++|+|+ +..++.-..+|.+.
T Consensus 301 ~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt--~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 301 GEPPNTVTSLFQAGFHFPCIQPPLHVAFSPT--MCSLVQIDEDGKTK 345 (753)
T ss_pred cCCccccccccccccccccCCCCceEEECcc--cceEEEEecCCCce
Confidence 111 000111111123445789985 34677777788755
No 467
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=82.63 E-value=27 Score=29.14 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=59.3
Q ss_pred eEEEEEcCCCCEEEEecC-CCeEEEEECCC--ce----eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC
Q 020454 165 IAFSKVDISEKFSLFGGK-GVEVNVWDLDK--CE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH 237 (326)
Q Consensus 165 v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~--~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg 237 (326)
-+.|+|+|+++.|+.+.. .+.|.-|++.. +. ..+..... .+...-.++.. .+|++.+++..+|
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~--------~~G~PDG~~vD--adG~lw~~a~~~g 234 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE--------EPGLPDGMAVD--ADGNLWVAAVWGG 234 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC--------CCCCCCceEEe--CCCCEEEecccCC
Confidence 458999999977766544 47788887763 11 11111100 01111123333 2565665554444
Q ss_pred -eEEEEeCCCCCCceeEEeecCCceEEEEec-CCCCeEEEEc
Q 020454 238 -QVRLYDTSAQRRPVMSFDFRETPIKAVAEE-PDSFNIYIGN 277 (326)
Q Consensus 238 -~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s-~~~~~l~~g~ 277 (326)
.|..|+.. + +.+..+......+++++|- |+.+.|++.+
T Consensus 235 ~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 235 GRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ceEEEECCC-C-cEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 99999999 5 5678887776778888885 3445555433
No 468
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=81.90 E-value=5.8 Score=21.14 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=16.5
Q ss_pred CCCeEEEEcCCCcEEEEECCC
Q 020454 269 DSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 269 ~~~~l~~g~~dg~v~iwd~~~ 289 (326)
.+..++.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 466899999999999999864
No 469
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=81.72 E-value=29 Score=28.87 Aligned_cols=117 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred EEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEe
Q 020454 187 NVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAE 266 (326)
Q Consensus 187 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~ 266 (326)
.++|+.+++.+..--..+... .|+ ++++.++-+..|.+.-+|..++ + ...+..-.+....++|
T Consensus 188 ~vidv~s~evl~~GLsmPhSP------------RWh---dgrLwvldsgtGev~~vD~~~G-~-~e~Va~vpG~~rGL~f 250 (335)
T TIGR03032 188 CVIDIPSGEVVASGLSMPHSP------------RWY---QGKLWLLNSGRGELGYVDPQAG-K-FQPVAFLPGFTRGLAF 250 (335)
T ss_pred EEEEeCCCCEEEcCccCCcCC------------cEe---CCeEEEEECCCCEEEEEcCCCC-c-EEEEEECCCCCcccce
Q ss_pred cCCCCeEEEEcCCCc--------------------EEEEECCCCeEEEEEc--ceecceEEEEEECCCCCEEEEeccCc
Q 020454 267 EPDSFNIYIGNGSGD--------------------LASVDIRTGKLLGCFI--GKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 267 s~~~~~l~~g~~dg~--------------------v~iwd~~~~~~~~~~~--~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
. |+++++|-+.-. |.+.|+++|..++-++ +. -..+..+++-|.-+.=..-+.|.
T Consensus 251 ~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~-v~EifdV~vLPg~r~P~~lg~~~ 326 (335)
T TIGR03032 251 A--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGV-IEEIYDVAVLPGVRRPEALGPDD 326 (335)
T ss_pred e--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCc-eeEEEEEEEecCCCCccccCCCc
No 470
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=80.85 E-value=8.8 Score=33.36 Aligned_cols=147 Identities=18% Similarity=0.138 Sum_probs=84.5
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCcee-eeee-cCCCCCCCCcCCCCcee-eeEEeecCCCcEEEEEeCCCeE
Q 020454 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTA-KPPPKNSLGIFTPTWFT-SAAFLSIDDHRKFVAGTNDHQV 239 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~v~-~~~~~p~~~~~~l~~~~~dg~v 239 (326)
..+..+-..|+++.+..-+. .++.++++.+... ..++ ...+.+.. ..|+ ..... ..+..+++++.||-|
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~-----~~Vte~l~lL--~Gg~SLLv~~~dG~v 292 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSR-----HQVTEQLYLL--SGGFSLLVVHEDGLV 292 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchH-----HHHHHHHHHH--hCceeEEEEcCCCce
Confidence 45667778999988876544 6888998875432 1111 11111110 1122 11111 145578888889988
Q ss_pred EEE-eCCCCCCc----eeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC
Q 020454 240 RLY-DTSAQRRP----VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (326)
Q Consensus 240 ~iw-d~~~~~~~----~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 314 (326)
.-| |.+...++ ++.++....++..+.-..+.+-+++-+..|++.++.....+.+..-+. ...+.-++++|.+.
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~--~~~~~~~~~Sp~~~ 370 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA--YQAPQLVAMSPNQA 370 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh--hcCcceeeeCcccc
Confidence 776 66644333 223333334555444334456677888899998887665555432221 34667788999888
Q ss_pred EEEEe
Q 020454 315 IIASC 319 (326)
Q Consensus 315 ~l~s~ 319 (326)
++++-
T Consensus 371 ~Ll~e 375 (733)
T COG4590 371 YLLSE 375 (733)
T ss_pred hheee
Confidence 77653
No 471
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=80.45 E-value=44 Score=30.18 Aligned_cols=266 Identities=14% Similarity=0.152 Sum_probs=118.9
Q ss_pred CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc--ceeeee
Q 020454 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVAI 91 (326)
Q Consensus 14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~--~~~~~~ 91 (326)
..+++-++++|.+....+... .+ .-.+..++.- .....++++.... +.+|++|+.-|.=.++.+... +++..+
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~-~~-~i~i~~~g~~--~~~~s~l~~l~~g-~d~lf~gs~~gds~l~~~~~~~l~~~~~~ 296 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDND-GG-SISITYLGTL--CSIASSLTYLKNG-GDYLFVGSEFGDSQLLQISLSNLEVLDSL 296 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEE-EE-EEEEEEEEE----S-ESEEEEESTT---EEEEEESSS-EEEEEEESESEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEEEEEC-CC-eEEEEEcCCc--CChhheEEEEcCC-CEEEEEEEecCCcEEEEEeCCCcEEEEec
Confidence 368899999999988888764 11 0011122221 1122234444443 457889988776556655433 233333
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccC--CCCceEEEEe---cCCcEEEEEccccccccccccceEEEEEccCCCceE
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESS--SRSRTLLTCT---TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~--~~~~~l~~~~---~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 166 (326)
.. -+||..+...+....... .....+++++ .+|.+++..-...-. ...+..-....-..++
T Consensus 297 ~N---------~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~-----~~~~~~~~l~~v~~iW 362 (504)
T PF10433_consen 297 PN---------WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIE-----GLELASSELPGVTGIW 362 (504)
T ss_dssp -------------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE-------EEEEEEESTEEEEE
T ss_pred cC---------cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCce-----eeeeeccCCCCceEEE
Confidence 33 378988887542210000 0001677775 467777765322110 0011111111112233
Q ss_pred EEEEcC-CCCEEEEecCCCeEEEEECC---CceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454 167 FSKVDI-SEKFSLFGGKGVEVNVWDLD---KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (326)
Q Consensus 167 ~~~~~~-~~~~l~sg~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw 242 (326)
.+.... ++.+|+.+..+ .-+++.+. ..+.+..+... .... ....+.+..+. + ..++=.+. ..|++.
T Consensus 363 ~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~---~f~~-~~~Tl~~~~~~---~-~~ivQVt~-~~i~l~ 432 (504)
T PF10433_consen 363 TLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEED---GFDT-DEPTLAAGNVG---D-GRIVQVTP-KGIRLI 432 (504)
T ss_dssp EE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE------TS-S-SS-EEEEEEET---T-TEEEEEES-SEEEEE
T ss_pred EeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhc---cCCC-CCCCeEEEEcC---C-CeEEEEec-CeEEEE
Confidence 333322 24666665554 33444443 23333222110 0000 01122222221 2 25555553 458888
Q ss_pred eCCCCCCceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-c---eecceEEEEEECC
Q 020454 243 DTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-G---KCSGSIRSIARHP 311 (326)
Q Consensus 243 d~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-~---~~~~~v~~l~~~p 311 (326)
+.... +....+.. ....|.+.+. ++.+++.+..++.+..+.+.......... . .....|.++...|
T Consensus 433 ~~~~~-~~~~~w~~~~~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 433 DLEDG-KLTQEWKPPAGSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp ESSST-SEEEEEE-TTS---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred ECCCC-eEEEEEeCCCCCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 87755 44445443 3445666555 45678888888999999998776643322 1 0267888888776
No 472
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=79.84 E-value=52 Score=30.63 Aligned_cols=174 Identities=10% Similarity=0.153 Sum_probs=83.0
Q ss_pred CCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC-
Q 020454 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK- 182 (326)
Q Consensus 104 ~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~- 182 (326)
..+.++.+.. ++..+++...+|.|.+|++.................++....-|..........++++-+.
T Consensus 130 ~kvv~Ik~~~--------~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~ 201 (670)
T PF10395_consen 130 DKVVGIKFSS--------DGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQL 201 (670)
T ss_pred cceEEEEEec--------CCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEc
Confidence 5677777764 5678999999999999998321110000000000000000011222221112244433333
Q ss_pred C---CeEEEEECC-CceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec-
Q 020454 183 G---VEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR- 257 (326)
Q Consensus 183 d---~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~- 257 (326)
+ -..+++.+. ....+..+.....+. .......|... .|.+..- .+++|.+|++... +..+++...
T Consensus 202 ~~~k~~ykL~~l~~~~~~~~El~s~~~e~------~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f-~~~~tI~l~~ 271 (670)
T PF10395_consen 202 SNSKLSYKLISLSNESSSIFELSSTILEN------FGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNF-QIQKTISLPS 271 (670)
T ss_pred CCCcEEEEEEEeccCCcceEEeehheecc------CCcccceEEEe-CCEEEEE--eCCEEEEEEcCCc-eEEEEEEech
Confidence 2 336677771 222333332111110 11223344433 4533322 6789999999866 444554432
Q ss_pred ---C--CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 258 ---E--TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 258 ---~--~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
. ..+.++. .|..+.++.+ .++.|++.|+.-...+.++.
T Consensus 272 ii~~~~~~~vSl~-~~s~nRvLLs-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 272 IIDKESDDLVSLK-PPSPNRVLLS-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred hhccccccceEee-cCCCCeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence 1 2333433 2455556553 44589999987655554443
No 473
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=78.46 E-value=42 Score=28.80 Aligned_cols=196 Identities=18% Similarity=0.190 Sum_probs=102.4
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~ 146 (326)
.+.++..+|.|.-+|.++++.+....... ....-..++. . .++.++.++.+|.++.+|.+..
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~--~~~~~~~~~~-~------------~~G~i~~g~~~g~~y~ld~~~G--- 131 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLG--AVAQLSGPIL-G------------SDGKIYVGSWDGKLYALDASTG--- 131 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcC--cceeccCceE-E------------eCCeEEEecccceEEEEECCCC---
Confidence 47778899999999998888654333210 0000111221 0 2467999999997666664321
Q ss_pred cccccceEEEEEccCCC--ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454 147 AESSCSTVKSWNVCASG--TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (326)
Q Consensus 147 ~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 224 (326)
-.+|...... .+..-.+- ....+..++.++.+...|..+++.++....... +.......+ . .
T Consensus 132 -------~~~W~~~~~~~~~~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~--~~~~~~~~~---~-~-- 195 (370)
T COG1520 132 -------TLVWSRNVGGSPYYASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAP--LSLSIYGSP---A-I-- 195 (370)
T ss_pred -------cEEEEEecCCCeEEecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCc--cccccccCc---e-e--
Confidence 1344443333 11111111 223344444789999999999998887554321 111111111 1 1
Q ss_pred CCCcEEEEEeC--CCeEEEEeCCCCCCceeEEee----cCCceE-EEEecC----CCCeEEEEcCCCcEEEEECCCCeEE
Q 020454 225 DDHRKFVAGTN--DHQVRLYDTSAQRRPVMSFDF----RETPIK-AVAEEP----DSFNIYIGNGSGDLASVDIRTGKLL 293 (326)
Q Consensus 225 ~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~----~~~~i~-~v~~s~----~~~~l~~g~~dg~v~iwd~~~~~~~ 293 (326)
.++ .+..+.. ++.+.-.|+..+ ....+.+. ....+. .-.+.. .+..++.++.++.+...|..+++.+
T Consensus 196 ~~~-~vy~~~~~~~~~~~a~~~~~G-~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 196 ASG-TVYVGSDGYDGILYALNAEDG-TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred ecc-eEEEecCCCcceEEEEEccCC-cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceE
Confidence 123 4555554 556666677655 33333211 111110 001110 1334467778888999999999888
Q ss_pred EEEcc
Q 020454 294 GCFIG 298 (326)
Q Consensus 294 ~~~~~ 298 (326)
.++..
T Consensus 274 W~~~~ 278 (370)
T COG1520 274 WSFPA 278 (370)
T ss_pred EEEec
Confidence 77764
No 474
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=78.12 E-value=19 Score=29.92 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (326)
Q Consensus 164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd 243 (326)
.++++...++|++|++.-.-..|.+.|-++++.++.+.+.......+ ....|.-..+-+.+-....++.|.++|
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~------~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTL------PATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccc------cCCcEeeccCCEEeccCCCCCEEEEEc
Confidence 48888999999999998888999999999999999987663322222 111232222332333445677888887
Q ss_pred C
Q 020454 244 T 244 (326)
Q Consensus 244 ~ 244 (326)
=
T Consensus 219 N 219 (299)
T PF14269_consen 219 N 219 (299)
T ss_pred C
Confidence 5
No 475
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=78.04 E-value=41 Score=28.38 Aligned_cols=98 Identities=18% Similarity=0.247 Sum_probs=58.2
Q ss_pred eeeeEEeecCCCcEEEEEeCC------CeEEEEeCCCCCCceeEEe---------------ecCCceEEEEecCCCCeEE
Q 020454 216 FTSAAFLSIDDHRKFVAGTND------HQVRLYDTSAQRRPVMSFD---------------FRETPIKAVAEEPDSFNIY 274 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~---------------~~~~~i~~v~~s~~~~~l~ 274 (326)
.-++++.+ ++.++++.-.+ ..|+.++.. + +....+. ..+..+-+++++|+|+.|+
T Consensus 87 ~Egi~~~~--~g~~~is~E~~~~~~~~p~I~~~~~~-G-~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~ 162 (326)
T PF13449_consen 87 PEGIAVPP--DGSFWISSEGGRTGGIPPRIRRFDLD-G-RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLF 162 (326)
T ss_pred hhHeEEec--CCCEEEEeCCccCCCCCCEEEEECCC-C-cccceEccccccccccCccccccCCCCeEEEEECCCCCEEE
Confidence 44677733 56577777677 788888866 3 2222221 2345788999999999766
Q ss_pred EEcCCC-------c-------EEE--EECCC-CeEEEE--Ecce------ecceEEEEEECCCCCEEE
Q 020454 275 IGNGSG-------D-------LAS--VDIRT-GKLLGC--FIGK------CSGSIRSIARHPTLPIIA 317 (326)
Q Consensus 275 ~g~~dg-------~-------v~i--wd~~~-~~~~~~--~~~~------~~~~v~~l~~~p~~~~l~ 317 (326)
+..+.. . +++ ||..+ ++.... |+-. ....|..+.+-+++++|+
T Consensus 163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 554332 1 444 55544 322222 2211 145788898989888665
No 476
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=77.58 E-value=48 Score=28.94 Aligned_cols=221 Identities=10% Similarity=0.039 Sum_probs=104.8
Q ss_pred EeeeCCCCCeEEEE-ecCCc----EEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454 58 SIDDSQNDPLLAVA-RKNGL----TDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (326)
Q Consensus 58 ~~~~~~~~~~l~~g-~~dg~----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~ 132 (326)
.+..+++++++|.+ +..|. |+++|+.+++.+...... .....+.|.+ ++..++....+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~---------~~~~~~~W~~--------d~~~~~y~~~~ 190 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN---------PKFSSVSWSD--------DGKGFFYTRFD 190 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE---------EESEEEEECT--------TSSEEEEEECS
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc---------cccceEEEeC--------CCCEEEEEEeC
Confidence 44556777777776 44454 999999999776532110 1111255544 33344333322
Q ss_pred C-----------cEEEEEccccccccccccceEEEEEccCCCc-eEEEEEcCCCCEEEEec---CC-CeEEEEECCCc--
Q 020454 133 G-----------KASMRSIEVTKVSAESSCSTVKSWNVCASGT-IAFSKVDISEKFSLFGG---KG-VEVNVWDLDKC-- 194 (326)
Q Consensus 133 g-----------~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~sg~---~d-~~i~iwd~~~~-- 194 (326)
. .|+.|.+.... ..-..+|....... ...+..++++++|+... .+ ..+.+.|+..+
T Consensus 191 ~~~~~~~~~~~~~v~~~~~gt~~------~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 191 EDQRTSDSGYPRQVYRHKLGTPQ------SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp TTTSS-CCGCCEEEEEEETTS-G------GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred cccccccCCCCcEEEEEECCCCh------HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 2 24555543322 11235555544444 67888899998876432 22 45788888764
Q ss_pred --eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe---CCCeEEEEeCCCCCC-cee-EEeecCC--ceEEEE
Q 020454 195 --EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRR-PVM-SFDFRET--PIKAVA 265 (326)
Q Consensus 195 --~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~---~dg~v~iwd~~~~~~-~~~-~~~~~~~--~i~~v~ 265 (326)
.....+..... .....+... .+.+++... .++.|.-.++..... ... .+..+.. .+..+.
T Consensus 265 ~~~~~~~l~~~~~--------~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~ 333 (414)
T PF02897_consen 265 PDAKPKLLSPRED--------GVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS 333 (414)
T ss_dssp SS-SEEEEEESSS--------S-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred CcCCcEEEeCCCC--------ceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence 11111111110 111122222 232333332 245777777775532 112 3333433 355544
Q ss_pred ecCCCCeEE-EEcCCC--cEEEEECCCCeEEEEEcceecceEEEEEECCCCC
Q 020454 266 EEPDSFNIY-IGNGSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (326)
Q Consensus 266 ~s~~~~~l~-~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 314 (326)
. .+.+|+ .-..++ .|+++++..+.....+...-.+.|..+...++.+
T Consensus 334 ~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 334 L--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp E--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-S
T ss_pred E--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCC
Confidence 4 455555 444454 4889999844554444432255566666555544
No 477
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=76.87 E-value=44 Score=29.38 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCC
Q 020454 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDK 193 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 193 (326)
..|..+...+..+.+++-..++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999999999999999999999974
No 478
>PRK05560 DNA gyrase subunit A; Validated
Probab=76.70 E-value=76 Score=30.76 Aligned_cols=205 Identities=12% Similarity=0.079 Sum_probs=100.6
Q ss_pred CCCeEEEEecCCcEEEEeccccce-------eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEE
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDL-------RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKAS 136 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~ 136 (326)
+.+.+++-+.+|.|+-....+-.. ...+.. .....+....... ....++..+..|.++
T Consensus 497 ~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~kl-------Ke~D~l~~~~~~~--------t~d~LllfTs~Grv~ 561 (805)
T PRK05560 497 EEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKT-------KEDDFVEHLFVAS--------THDTLLFFTNRGRVY 561 (805)
T ss_pred CCCEEEEEeCCCEEEEcchhhhhhhcccCCCcccccc-------CCCCeeEEEEEec--------CCCeEEEEecCCeEE
Confidence 455788899999999886643211 011111 1223444333333 456788888899887
Q ss_pred EEEccccccccccccce-E-EEEEccCCCceE-EEEEcC--CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454 137 MRSIEVTKVSAESSCST-V-KSWNVCASGTIA-FSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 137 i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~v~-~~~~~~--~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (326)
......-....-...|. + .++.+..++.|. .+.+.. +..+++..+.+|.++--++..-+.... . ......+.
T Consensus 562 ~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r--~-G~~~ikLk 638 (805)
T PRK05560 562 RLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRS--N-GIIAINLD 638 (805)
T ss_pred EEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhccc--C-CceeeccC
Confidence 77654322111111121 1 123344444444 334442 567788889999988776643221110 0 00001111
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC---C-----CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEE
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---R-----RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~---~-----~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~ 283 (326)
....+..+.... ....++..+..|.+..+....- . .....+...+.-+..+.+.++..+++..+..|.++
T Consensus 639 e~D~lv~v~~~~--~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iK 716 (805)
T PRK05560 639 EGDELIGVRLTD--GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGK 716 (805)
T ss_pred CCCEEEEEEEeC--CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEE
Confidence 112232332222 2236777777887776664321 0 11122222222233344444444788888899888
Q ss_pred EEECC
Q 020454 284 SVDIR 288 (326)
Q Consensus 284 iwd~~ 288 (326)
...+.
T Consensus 717 r~~l~ 721 (805)
T PRK05560 717 RTPVS 721 (805)
T ss_pred EEEHH
Confidence 77643
No 479
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=75.62 E-value=41 Score=27.15 Aligned_cols=77 Identities=8% Similarity=0.028 Sum_probs=41.7
Q ss_pred CCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceE-EEEEcC--CCCEEEE
Q 020454 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA-FSKVDI--SEKFSLF 179 (326)
Q Consensus 103 ~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~--~~~~l~s 179 (326)
...|+++....+.... ...-..++.|+++|.|++.|-.... .+..+++.. -++. +..-.- -+-.|++
T Consensus 176 ~t~ITcm~tikk~~~d-~~a~scLViGTE~~~i~iLd~~af~--------il~~~~lps-vPv~i~~~G~~devdyRI~V 245 (257)
T PF14779_consen 176 QTVITCMATIKKSSAD-EDAVSCLVIGTESGEIYILDPQAFT--------ILKQVQLPS-VPVFISVSGQYDEVDYRIVV 245 (257)
T ss_pred CceeEEeeeecccccC-CCCcceEEEEecCCeEEEECchhhe--------eEEEEecCC-CceEEEEEeeeeccceEEEE
Confidence 4567777766544211 1123579999999999999855432 333333321 1221 111111 1234566
Q ss_pred ecCCCeEEEE
Q 020454 180 GGKGVEVNVW 189 (326)
Q Consensus 180 g~~d~~i~iw 189 (326)
++.||.|.+.
T Consensus 246 a~Rdg~iy~i 255 (257)
T PF14779_consen 246 ACRDGKIYTI 255 (257)
T ss_pred EeCCCEEEEE
Confidence 7888888653
No 480
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=75.06 E-value=54 Score=28.27 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=51.3
Q ss_pred CCceeeeEEeecCCCcEEEEEeC---CC-eEEEEeCCCCCCceeEEeec--CCceEEEEecCCCCeEE-EEc----CCCc
Q 020454 213 PTWFTSAAFLSIDDHRKFVAGTN---DH-QVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIY-IGN----GSGD 281 (326)
Q Consensus 213 ~~~v~~~~~~p~~~~~~l~~~~~---dg-~v~iwd~~~~~~~~~~~~~~--~~~i~~v~~s~~~~~l~-~g~----~dg~ 281 (326)
..|+..+.|+|.+ ..+|+-|-. +. .-|||-+++.......+..+ ...+.-=-|.|||..|. .+- .+..
T Consensus 187 ~~wlgH~~fsP~d-p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~ 265 (386)
T PF14583_consen 187 TDWLGHVQFSPTD-PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW 265 (386)
T ss_dssp SS-EEEEEEETTE-EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE
T ss_pred CccccCcccCCCC-CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE
Confidence 4688899999974 446666643 22 23677665432223333222 22344445889998776 222 2345
Q ss_pred EEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454 282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 282 v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
|.-+|+.+++.....+ ...-..+-.++++.+++-=|.|
T Consensus 266 i~~~d~~t~~~~~~~~---~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 266 IAGYDPDTGERRRLME---MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEE-TTT--EEEEEE---E-SEEEEEE-TTSSEEEEEE--
T ss_pred EEeeCCCCCCceEEEe---CCceeeeEEcCCCCEEEecCCC
Confidence 7778888876543222 2234456667898877655544
No 481
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=72.47 E-value=9.6 Score=18.48 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=10.3
Q ss_pred EEEEecCCCCeEEEEcCCCcEEE
Q 020454 262 KAVAEEPDSFNIYIGNGSGDLAS 284 (326)
Q Consensus 262 ~~v~~s~~~~~l~~g~~dg~v~i 284 (326)
..++.+++|+.+++=+....|.+
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 34455545544444444444443
No 482
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=72.47 E-value=49 Score=26.62 Aligned_cols=147 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 020454 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (326)
Q Consensus 171 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~ 250 (326)
+|+...+++.-+.+-+++||+. ++.+..+...+-+..+++..-....-+..- ..++--....|.+|-+....+.
T Consensus 64 ~P~kS~vItt~Kk~Gl~VYDLs-GkqLqs~~~Gk~NNVDLrygF~LgG~~idi-----aaASdR~~~~i~~y~Idp~~~~ 137 (364)
T COG4247 64 NPDKSLVITTVKKAGLRVYDLS-GKQLQSVNPGKYNNVDLRYGFQLGGQSIDI-----AAASDRQNDKIVFYKIDPNPQY 137 (364)
T ss_pred CcCcceEEEeeccCCeEEEecC-CCeeeecCCCcccccccccCcccCCeEEEE-----EecccccCCeEEEEEeCCCccc
Q ss_pred eeEEe-------ecCCceEEEEecCCCC----eEEEEcCCCcEEEEECCC-------CeEEEEEcceecceEEEEEECCC
Q 020454 251 VMSFD-------FRETPIKAVAEEPDSF----NIYIGNGSGDLASVDIRT-------GKLLGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 251 ~~~~~-------~~~~~i~~v~~s~~~~----~l~~g~~dg~v~iwd~~~-------~~~~~~~~~~~~~~v~~l~~~p~ 312 (326)
+.++. ...+....+++..+.. ++++...+|.|..|.+-. .+.++.|+ ....-..+.....
T Consensus 138 L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk--~~tQTEG~VaDdE 215 (364)
T COG4247 138 LESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFK--IPTQTEGMVADDE 215 (364)
T ss_pred eeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeee--cCCcccceeeccc
Q ss_pred CCEEEEeccCccC
Q 020454 313 LPIIASCGFLEAA 325 (326)
Q Consensus 313 ~~~l~s~s~D~~~ 325 (326)
-..|..+-.|-++
T Consensus 216 tG~LYIaeEdvai 228 (364)
T COG4247 216 TGFLYIAEEDVAI 228 (364)
T ss_pred cceEEEeecccee
No 483
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=72.06 E-value=14 Score=24.01 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=32.0
Q ss_pred CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCC
Q 020454 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRT 289 (326)
Q Consensus 236 dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~ 289 (326)
-+.|..||.... +.....-..-+.|.++|++++|++++ ..+.|++|..+.
T Consensus 35 ~~~Vvyyd~~~~----~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 35 WGNVVYYDGKEV----KVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEEeCCEe----EEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 345666775432 22222224457889999999998665 457899998653
No 484
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=71.80 E-value=0.88 Score=39.48 Aligned_cols=145 Identities=11% Similarity=0.047 Sum_probs=86.4
Q ss_pred EEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcE
Q 020454 56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA 135 (326)
Q Consensus 56 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v 135 (326)
++.+.|..++.-+++++.+-.+..||-. ++....... .+....+.+.. + -+..++.+...+.+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~---------tg~aldm~wDk-e------gdvlavlAek~~pi 99 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP---------TGKALDMAWDK-E------GDVLAVLAEKTGPI 99 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC---------chhHhhhhhcc-c------cchhhhhhhcCCCe
Confidence 4555666666669999999999999974 443333322 13344455432 2 34567778889999
Q ss_pred EEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCc
Q 020454 136 SMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW 215 (326)
Q Consensus 136 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (326)
.+|+++.+..-.-...+. +.... +.|++....++.+...+.+.|++-.+.+.+-..-.|. ..
T Consensus 100 ylwd~n~eytqqLE~gg~-------~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~---------RR 161 (615)
T KOG2247|consen 100 YLWDVNSEYTQQLESGGT-------SSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQ---------RR 161 (615)
T ss_pred eechhhhhhHHHHhccCc-------chHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccc---------cc
Confidence 999988654210000000 01111 4567667777888888999999988766554433222 34
Q ss_pred eeeeEEeecCCCcEEEEEeCCCe
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQ 238 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~ 238 (326)
++.+++.+. + +.+.++.|..
T Consensus 162 gtq~av~lE--d-~vil~dcd~~ 181 (615)
T KOG2247|consen 162 GTQIAVTLE--D-YVILCDCDNT 181 (615)
T ss_pred eeEEEeccc--c-eeeecCcHHH
Confidence 666777663 2 5555555543
No 485
>PRK13684 Ycf48-like protein; Provisional
Probab=71.29 E-value=63 Score=27.38 Aligned_cols=146 Identities=12% Similarity=0.029 Sum_probs=73.8
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i 241 (326)
...+..+.+.+++.+++++. .|.+..- ...+...+...... ....++++.+.+ ++..++++ ..|.+++
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~~-------~~~~l~~i~~~~--~g~~~~vg-~~G~~~~ 239 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQRN-------SSRRLQSMGFQP--DGNLWMLA-RGGQIRF 239 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeCC-------CcccceeeeEcC--CCCEEEEe-cCCEEEE
Confidence 34688899999888777654 4444321 11222222211111 113467788877 34455554 5676653
Q ss_pred EeCCCCCCceeEEee----cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc--eecceEEEEEECCCCCE
Q 020454 242 YDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG--KCSGSIRSIARHPTLPI 315 (326)
Q Consensus 242 wd~~~~~~~~~~~~~----~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~--~~~~~v~~l~~~p~~~~ 315 (326)
=....+ ..-..... ....+..+.+.|++..+++ +.+|.+. .....++--...+. ........+.|..++..
T Consensus 240 ~s~d~G-~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~ 316 (334)
T PRK13684 240 NDPDDL-ESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKG 316 (334)
T ss_pred ccCCCC-CccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCce
Confidence 222222 11111111 2245788899988775555 4566554 33444443322221 11335777887766666
Q ss_pred EEEeccCc
Q 020454 316 IASCGFLE 323 (326)
Q Consensus 316 l~s~s~D~ 323 (326)
+++| ..|
T Consensus 317 ~~~G-~~G 323 (334)
T PRK13684 317 FVLG-QRG 323 (334)
T ss_pred EEEC-CCc
Confidence 5544 344
No 486
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=71.16 E-value=14 Score=24.27 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=28.5
Q ss_pred EEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454 275 IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 275 ~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
.+..+|.+.-||..+++..--+.+ -.--+.|+++|++.+|+.+
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~--L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDG--LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEE--ESSEEEEEE-TTSSEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhC--CCccCeEEEcCCCCEEEEE
Confidence 445677899999998876443442 3356789999999987765
No 487
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=71.14 E-value=58 Score=26.91 Aligned_cols=157 Identities=13% Similarity=0.023 Sum_probs=0.0
Q ss_pred ccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454 150 SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (326)
Q Consensus 150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 229 (326)
....+.+-.+.....+..++++ +++...+..+.-++|.|+.+........... ....++.-.-.|++
T Consensus 74 ~t~~~l~~~i~~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-----------t~gyaygv~vsGn~ 140 (370)
T COG5276 74 QTHDVLLSVINARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLN-----------TDGYAYGVYVSGNY 140 (370)
T ss_pred ccCcceEEEEehhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceecccc-----------CCceEEEEEecCCE
Q ss_pred EEEEeCCCeEEEEeCCCCCCceeEEeecCCce--EEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecc-eEEE
Q 020454 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI--KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG-SIRS 306 (326)
Q Consensus 230 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i--~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~ 306 (326)
..++..|.-..++|+.....|+..-......- ..++.| |++-+.+..|+-+.+-|+.......-+..-..+ .+.+
T Consensus 141 aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~s 218 (370)
T COG5276 141 AYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYS 218 (370)
T ss_pred EEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEE
Q ss_pred EEECCCCCEEEEecc
Q 020454 307 IARHPTLPIIASCGF 321 (326)
Q Consensus 307 l~~~p~~~~l~s~s~ 321 (326)
+..+++..+++....
T Consensus 219 v~vsdnr~y~vvy~e 233 (370)
T COG5276 219 VSVSDNRAYLVVYDE 233 (370)
T ss_pred EEecCCeeEEEEccc
No 488
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=71.01 E-value=11 Score=18.38 Aligned_cols=26 Identities=4% Similarity=0.084 Sum_probs=19.4
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEE
Q 020454 163 GTIAFSKVDISEKFSLFGGKGVEVNVWD 190 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd 190 (326)
+.|.+++.. .++++++...+.+|+|.
T Consensus 2 E~i~aia~g--~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAG--DSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEcc--CCEEEEEeCCCeEEecC
Confidence 356667665 47888888889999873
No 489
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=70.65 E-value=19 Score=23.63 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=28.1
Q ss_pred EEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEE
Q 020454 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG 276 (326)
Q Consensus 231 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g 276 (326)
+.+..+|.+.-||+.++ + +..+...-.--+.|++++|+.+++.+
T Consensus 31 le~~~~GRll~ydp~t~-~-~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 31 LEGRPTGRLLRYDPSTK-E-TTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HHT---EEEEEEETTTT-E-EEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred ecCCCCcCEEEEECCCC-e-EEEehhCCCccCeEEEcCCCCEEEEE
Confidence 34456789999999986 3 33333333456889999999988764
No 490
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=69.99 E-value=97 Score=29.00 Aligned_cols=214 Identities=7% Similarity=0.011 Sum_probs=106.9
Q ss_pred eEEEEecCCcEEEEecc-ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC-cEEEEEccccc
Q 020454 67 LLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG-KASMRSIEVTK 144 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g-~v~i~~~~~~~ 144 (326)
.+-.|=..-.|.-|-+. +.+++..+.. +....|.++....... .....+.|-.++ .-++.-+....
T Consensus 41 ~IdiGIS~S~ISsYIi~PTPKLiwsypi-------~pt~iV~~~dV~~~~~-----~~~~~~~glt~rKk~~ll~i~~~~ 108 (670)
T PF10395_consen 41 QIDIGISGSAISSYIIKPTPKLIWSYPI-------SPTTIVECCDVLEKSD-----GKKLYCVGLTERKKFKLLLIERKV 108 (670)
T ss_pred eEEEEeccchhhheecCCCcceeEeecc-------CcCceEEEEEeEecCC-----CcEEEEEEEeeCCeeEEEEEEccC
Confidence 45555554555555442 4555555543 3335677777655321 123455553444 34555444331
Q ss_pred c---ccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeee--eecCCCCCCCCcCCCCceeee
Q 020454 145 V---SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFTPTWFTSA 219 (326)
Q Consensus 145 ~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~ 219 (326)
. ...........+.+.-...|-.+.+.++++.+++.-.+|.|.+||...+.... ..+..... .+.....|...
T Consensus 109 ~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~--~v~ys~fv~~~ 186 (670)
T PF10395_consen 109 GSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSI--NVSYSKFVNDF 186 (670)
T ss_pred ccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccccc--ceehhhhhccc
Confidence 1 11112233344444557789999999999999999999999999994332211 11111111 01011111111
Q ss_pred EEeecCCCcEEEEEeC-C---CeEEEEeCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454 220 AFLSIDDHRKFVAGTN-D---HQVRLYDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 220 ~~~p~~~~~~l~~~~~-d---g~v~iwd~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~ 292 (326)
..- ....++++.+. + -..+++.+......+..+. .+........|+-+...|+.= .++.|.+|++.+-+.
T Consensus 187 ~~~--~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~ 263 (670)
T PF10395_consen 187 ELE--NGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQI 263 (670)
T ss_pred ccc--cCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceE
Confidence 111 11234444443 2 2567788732223344443 222222333333333344433 677999999988777
Q ss_pred EEEEc
Q 020454 293 LGCFI 297 (326)
Q Consensus 293 ~~~~~ 297 (326)
.+++.
T Consensus 264 ~~tI~ 268 (670)
T PF10395_consen 264 QKTIS 268 (670)
T ss_pred EEEEE
Confidence 66554
No 491
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=68.04 E-value=89 Score=27.83 Aligned_cols=58 Identities=5% Similarity=-0.145 Sum_probs=35.1
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCcee--eeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 224 (326)
..-..|+|.|++++|++--..|.|++++..++.. +..+...... ........++++|.
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~----~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVND----AQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceecc----CCCCceeeEEECCC
Confidence 4567899999998887754469999998655432 1111111000 01244678899986
No 492
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.73 E-value=57 Score=25.47 Aligned_cols=123 Identities=12% Similarity=0.135 Sum_probs=66.5
Q ss_pred cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe--ecC
Q 020454 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRE 258 (326)
Q Consensus 181 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~ 258 (326)
-.++.-..+|.++.+.+....-.. + .| +++. ++..|+.+....+++.-|+.+.. ...++. ...
T Consensus 108 w~egvaf~~d~~t~~~lg~~~y~G-e-------GW--gLt~----d~~~LimsdGsatL~frdP~tfa-~~~~v~VT~~g 172 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRFSYEG-E-------GW--GLTS----DDKNLIMSDGSATLQFRDPKTFA-ELDTVQVTDDG 172 (262)
T ss_pred eccceeEEEChHHhhhhcccccCC-c-------ce--eeec----CCcceEeeCCceEEEecCHHHhh-hcceEEEEECC
Confidence 466777778877766554432211 1 11 2221 34456666666778888877652 222222 222
Q ss_pred Cc---eEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-----------ceecceEEEEEECCCC-CEEEEe
Q 020454 259 TP---IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-----------GKCSGSIRSIARHPTL-PIIASC 319 (326)
Q Consensus 259 ~~---i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-----------~~~~~~v~~l~~~p~~-~~l~s~ 319 (326)
.+ ++.+.|- +|...|---.+..|...|..+|+.+.-+. ..+..-.+.|++.|++ ++++||
T Consensus 173 ~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 173 VPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 22 3334442 56555544455566666777776654332 1114467789999976 566665
No 493
>PHA02790 Kelch-like protein; Provisional
Probab=66.52 E-value=99 Score=27.81 Aligned_cols=104 Identities=14% Similarity=0.192 Sum_probs=50.1
Q ss_pred CCCEEEEecCCC---eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454 173 SEKFSLFGGKGV---EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (326)
Q Consensus 173 ~~~~l~sg~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~ 249 (326)
++++.+.||.++ .+..||.++.+-... .. +..+..-.+++.. ++++.+.| |.+.+||+.+..-
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~--~~------m~~~r~~~~~~~~---~~~IYv~G---G~~e~ydp~~~~W 427 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFG--PS------TYYPHYKSCALVF---GRRLFLVG---RNAEFYCESSNTW 427 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeC--CC------CCCccccceEEEE---CCEEEEEC---CceEEecCCCCcE
Confidence 567777887653 466788765442221 11 0011111122211 44455555 3577899875411
Q ss_pred -ceeEEeecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeE
Q 020454 250 -PVMSFDFRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKL 292 (326)
Q Consensus 250 -~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~ 292 (326)
.+..+.........+.+ +++..++|+.+ ..+..||..+++.
T Consensus 428 ~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 428 TLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred eEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 11111111122222233 56677777754 3577777776654
No 494
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=65.25 E-value=29 Score=32.85 Aligned_cols=134 Identities=15% Similarity=0.073 Sum_probs=74.8
Q ss_pred EEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC----CCc
Q 020454 176 FSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----RRP 250 (326)
Q Consensus 176 ~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~----~~~ 250 (326)
.+..|+.++.|.|+.-..+. .......... ....+.++.+++. .+..|.-||++-.|--... ..|
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~sp------e~~~v~~l~~ss~----Slgagl~dgt~a~y~rap~gSwd~ep 618 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSP------EHESVKLLLFSSG----SLGAGLIDGTLAVYGRAPSGSWDGEP 618 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCC------chhhhhhhhcccc----ccccCccCCccccccCCCCCCCCCCC
Confidence 45678888999888755221 1111111111 1123445555432 4555556666655532111 012
Q ss_pred eeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce--ecceEEEEEECCCCCEEEEeccC
Q 020454 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 251 ~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
...+.....++.+.++..| ++.|+.+|.|.++...+.........| +...|+++...-.+-+++-.+.|
T Consensus 619 ~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~ 689 (925)
T KOG3522|consen 619 NISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD 689 (925)
T ss_pred ccccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC
Confidence 2333444567888777543 566789999999998875444433322 15578888887777666655544
No 495
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=64.63 E-value=1.6e+02 Score=29.62 Aligned_cols=145 Identities=15% Similarity=0.201 Sum_probs=73.9
Q ss_pred CCeEEEEec---------CCcEEEEeccc-----c------ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCc
Q 020454 65 DPLLAVARK---------NGLTDILNPLN-----G------DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (326)
Q Consensus 65 ~~~l~~g~~---------dg~i~i~~~~~-----~------~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 124 (326)
.+||++|.. -|.+.|||+-. | +++..+.. .-.++|..++- -.+
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~e-------E~KGtVsavce----------V~G 1108 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIE-------EQKGTVSAVCE----------VRG 1108 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehh-------hcccceEEEEE----------ecc
Confidence 468888853 38899998732 1 12111111 23356665553 224
Q ss_pred eEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCc--eeeeeecC
Q 020454 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKP 202 (326)
Q Consensus 125 ~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~--~~~~~~~~ 202 (326)
.++++ ..-+|.+|+++...... .+...+ .+++......=+++|+.|.--..|.+.-.+.. +.....+.
T Consensus 1109 ~l~~~-~GqKI~v~~l~r~~~li-----gVaFiD----~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd 1178 (1366)
T KOG1896|consen 1109 HLLSS-QGQKIIVRKLDRDSELI-----GVAFID----LPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRD 1178 (1366)
T ss_pred EEEEc-cCcEEEEEEeccCCcce-----eeEEec----cceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecC
Confidence 44443 34566777764332211 111111 12333333333566666665555655444322 22111111
Q ss_pred CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeC
Q 020454 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244 (326)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~ 244 (326)
. .+-.++++.|.-+...-.++++..++.|++|-.
T Consensus 1179 ~--------~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1179 F--------EPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred C--------chhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence 1 113477888887655557888889998888753
No 496
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=63.23 E-value=93 Score=26.36 Aligned_cols=40 Identities=8% Similarity=-0.090 Sum_probs=21.6
Q ss_pred cEEEEECCCCeEEE--EEcceecceEEEEEECCCCCEEEEeccCc
Q 020454 281 DLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 281 ~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
.+.+||..+.+... .++.. .-...+..-++++++.||.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~---~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQG---LAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCC---ceeeEEEEcCCEEEEEeccCC
Confidence 46788887654322 22211 111223334788888888764
No 497
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=63.12 E-value=15 Score=34.20 Aligned_cols=33 Identities=9% Similarity=0.219 Sum_probs=27.6
Q ss_pred CceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (326)
Q Consensus 259 ~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~ 291 (326)
..++++.-+|.|..++.++.||+|.+|+....+
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 346777888999999999999999999986543
No 498
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=61.05 E-value=1.1e+02 Score=26.48 Aligned_cols=173 Identities=13% Similarity=0.075 Sum_probs=75.8
Q ss_pred eEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCcee--eeeecC
Q 020454 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK--IWTAKP 202 (326)
Q Consensus 125 ~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~ 202 (326)
.|+.+..+|.-.+|.++.... ...++-+.. ........++|+.+.++-.-.+..|.-.|+++.+. ++.+..
T Consensus 50 llF~s~~dg~~nly~lDL~t~------~i~QLTdg~-g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~ 122 (386)
T PF14583_consen 50 LLFASDFDGNRNLYLLDLATG------EITQLTDGP-GDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD 122 (386)
T ss_dssp EEEEE-TTSS-EEEEEETTT-------EEEE---SS--B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T
T ss_pred EEEEeccCCCcceEEEEcccC------EEEECccCC-CCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc
Confidence 445555577666665554321 011111111 11222344567777665444556888889888654 333222
Q ss_pred CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC----------------------CCeEEEEeCCCCCCceeEEeecCCc
Q 020454 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----------------------DHQVRLYDTSAQRRPVMSFDFRETP 260 (326)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~----------------------dg~v~iwd~~~~~~~~~~~~~~~~~ 260 (326)
.|+-...|..+.++..++-.-. ...|...|+.++ + ...+-.....
T Consensus 123 -----------~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-~-~~~v~~~~~w 189 (386)
T PF14583_consen 123 -----------DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-E-RKVVFEDTDW 189 (386)
T ss_dssp -----------TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-
T ss_pred -----------ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-c-eeEEEecCcc
Confidence 4565567766555544433211 123445566655 3 3444445577
Q ss_pred eEEEEecCCCCeEEEEcCCC-----cEEEEECCC-CeEEEEEccee-cceEEEEEECCCCCEEE
Q 020454 261 IKAVAEEPDSFNIYIGNGSG-----DLASVDIRT-GKLLGCFIGKC-SGSIRSIARHPTLPIIA 317 (326)
Q Consensus 261 i~~v~~s~~~~~l~~g~~dg-----~v~iwd~~~-~~~~~~~~~~~-~~~v~~l~~~p~~~~l~ 317 (326)
+.-+.|+|....+++=+..| .-+||-+++ +.....+..+. ...+..=-|.|+|..|.
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 88899999765555433332 136776654 22222222111 22344445777776544
No 499
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=60.76 E-value=1.7e+02 Score=28.49 Aligned_cols=205 Identities=14% Similarity=0.112 Sum_probs=100.5
Q ss_pred CCCeEEEEecCCcEEEEeccccce-------eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEE
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDL-------RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKAS 136 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~ 136 (326)
+.+.+++-+.+|.|+-.+..+-.. ...+.. .....+....... ..+.++..+..|.++
T Consensus 495 ~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~kl-------Ke~D~l~~~~~~~--------t~d~LllfTs~Grv~ 559 (800)
T TIGR01063 495 RENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADM-------KDDDFIEQLLVAS--------THDYLLFFTNRGKVY 559 (800)
T ss_pred cceEEEEEcCCCEEEecchhhhhhhcccCcCcccccc-------CCCCeeEEEEEec--------CCCeEEEEeCCCcEE
Confidence 345688899999999886642211 111111 1223444333333 456788888889887
Q ss_pred EEEccccccccccccce-E-EEEEccCCCceE-EEEEc--CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454 137 MRSIEVTKVSAESSCST-V-KSWNVCASGTIA-FSKVD--ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 137 i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~v~-~~~~~--~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (326)
......-....-...|. + .++.+..++.|. .+... .+..+++..+.+|.++-.++..-+.... .+ .....+.
T Consensus 560 ~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r-~G--~~aiklk 636 (800)
T TIGR01063 560 WLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRS-NG--IIAIKLD 636 (800)
T ss_pred EEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhcc-CC--cccccCC
Confidence 66543322111111111 1 123334444443 33332 2456778888999999887754221111 00 0011111
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC---CCC---CceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEE
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS---AQR---RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~---~~~---~~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~i 284 (326)
....+..+.... ....++..+..|.+..+... ... ..+..+.. .+..|.++..-.+...++..+..|.++.
T Consensus 637 e~D~lv~v~~~~--~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr 714 (800)
T TIGR01063 637 DGDELISVRLTS--GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKR 714 (800)
T ss_pred CCCEEEEEEEeC--CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEE
Confidence 112233332222 22356777777876666543 111 11222222 2234555444344557888889998888
Q ss_pred EECC
Q 020454 285 VDIR 288 (326)
Q Consensus 285 wd~~ 288 (326)
..+.
T Consensus 715 ~~l~ 718 (800)
T TIGR01063 715 TSIE 718 (800)
T ss_pred EEHH
Confidence 7654
No 500
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.38 E-value=2e+02 Score=29.25 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=29.1
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCC
Q 020454 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK 193 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 193 (326)
..+|..+.++.+.+.+.+-+..++|.+||+..
T Consensus 242 ~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 242 KDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 55899999999999999999999999999976
Done!