Query 020454
Match_columns 326
No_of_seqs 457 out of 2195
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 03:13:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 1.1E-41 3.7E-46 283.7 37.0 266 15-325 49-314 (321)
2 2ynn_A Coatomer subunit beta'; 100.0 3.5E-40 1.2E-44 272.7 36.6 268 15-325 26-296 (304)
3 1vyh_C Platelet-activating fac 100.0 8.7E-41 3E-45 287.6 33.8 266 15-325 121-404 (410)
4 1got_B GT-beta; complex (GTP-b 100.0 7.2E-39 2.5E-43 269.0 35.8 266 15-325 68-336 (340)
5 4gqb_B Methylosome protein 50; 100.0 1.9E-39 6.4E-44 272.3 30.6 238 53-325 84-324 (344)
6 2pbi_B Guanine nucleotide-bind 100.0 9.7E-38 3.3E-42 263.4 35.9 264 15-325 77-350 (354)
7 4g56_B MGC81050 protein; prote 100.0 4.3E-38 1.5E-42 265.8 28.9 273 15-325 55-336 (357)
8 3iz6_a 40S ribosomal protein R 100.0 1.7E-37 5.8E-42 264.5 30.6 272 15-325 79-368 (380)
9 2ynn_A Coatomer subunit beta'; 100.0 1.6E-36 5.5E-41 250.7 33.6 236 51-325 13-252 (304)
10 3ow8_A WD repeat-containing pr 100.0 1.8E-36 6.2E-41 252.2 32.2 241 49-325 30-272 (321)
11 3frx_A Guanine nucleotide-bind 100.0 5E-36 1.7E-40 249.4 34.9 267 15-325 31-310 (319)
12 1erj_A Transcriptional repress 100.0 5.5E-36 1.9E-40 256.3 35.7 272 16-325 77-382 (393)
13 1nr0_A Actin interacting prote 100.0 1.2E-36 4E-41 274.7 32.4 289 15-325 161-560 (611)
14 4ery_A WD repeat-containing pr 100.0 2.3E-35 7.9E-40 244.7 36.3 265 15-325 36-305 (312)
15 2hes_X YDR267CP; beta-propelle 100.0 9E-36 3.1E-40 249.1 33.4 273 16-325 26-321 (330)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.3E-35 4.6E-40 249.6 34.6 272 15-325 29-328 (345)
17 2xzm_R RACK1; ribosome, transl 100.0 2.2E-35 7.5E-40 248.1 35.4 267 15-325 40-333 (343)
18 1vyh_C Platelet-activating fac 100.0 5.5E-36 1.9E-40 257.6 31.3 235 51-325 108-362 (410)
19 1sq9_A Antiviral protein SKI8; 100.0 2.9E-35 1E-39 252.0 31.7 283 15-325 27-388 (397)
20 2ymu_A WD-40 repeat protein; u 100.0 2E-34 6.9E-39 258.6 35.7 258 15-325 316-573 (577)
21 4aez_A CDC20, WD repeat-contai 100.0 2.5E-34 8.4E-39 246.8 34.5 264 15-325 104-373 (401)
22 4gga_A P55CDC, cell division c 100.0 3.5E-34 1.2E-38 247.3 35.0 263 17-325 118-388 (420)
23 3k26_A Polycomb protein EED; W 100.0 1.3E-34 4.4E-39 245.1 30.2 282 15-325 35-359 (366)
24 1r5m_A SIR4-interacting protei 100.0 9.4E-34 3.2E-38 244.4 35.1 276 16-325 60-418 (425)
25 2pm9_A Protein WEB1, protein t 100.0 1E-34 3.5E-39 250.1 28.9 281 16-325 27-330 (416)
26 4gqb_B Methylosome protein 50; 100.0 2.5E-34 8.6E-39 241.1 30.4 240 13-292 92-334 (344)
27 1nr0_A Actin interacting prote 100.0 2.6E-34 9E-39 259.4 32.6 260 16-325 32-348 (611)
28 3dm0_A Maltose-binding peripla 100.0 3.1E-34 1.1E-38 262.8 32.9 269 15-325 396-686 (694)
29 2ymu_A WD-40 repeat protein; u 100.0 1E-33 3.5E-38 254.0 35.5 268 15-325 234-532 (577)
30 4aow_A Guanine nucleotide-bind 100.0 4.7E-33 1.6E-37 233.2 36.7 268 15-325 52-330 (340)
31 1gxr_A ESG1, transducin-like e 100.0 6.8E-33 2.3E-37 231.8 36.9 267 15-325 64-330 (337)
32 1got_B GT-beta; complex (GTP-b 100.0 1.9E-33 6.4E-38 236.0 33.4 240 50-325 54-294 (340)
33 3zwl_B Eukaryotic translation 100.0 6.3E-33 2.2E-37 234.8 36.9 271 15-325 45-339 (369)
34 3vl1_A 26S proteasome regulato 100.0 5.5E-34 1.9E-38 246.0 30.6 272 15-325 69-358 (420)
35 2pbi_B Guanine nucleotide-bind 100.0 3.3E-33 1.1E-37 235.7 34.2 245 50-325 63-308 (354)
36 4ggc_A P55CDC, cell division c 100.0 2.2E-33 7.5E-38 233.1 32.6 268 16-325 37-308 (318)
37 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.8E-33 1.6E-37 242.0 36.0 262 15-324 130-430 (445)
38 2j04_B YDR362CP, TAU91; beta p 100.0 2E-34 6.8E-39 253.5 25.6 278 17-325 176-510 (524)
39 1k8k_C P40, ARP2/3 complex 41 100.0 3.5E-33 1.2E-37 236.9 32.3 271 15-325 21-354 (372)
40 3i2n_A WD repeat-containing pr 100.0 1.6E-33 5.3E-38 237.7 28.9 275 16-325 33-346 (357)
41 2pm7_B Protein transport prote 100.0 4.1E-33 1.4E-37 229.5 29.8 243 50-325 8-278 (297)
42 1p22_A F-BOX/WD-repeat protein 100.0 4.4E-33 1.5E-37 241.6 31.3 256 14-325 143-407 (435)
43 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.3E-33 1.5E-37 234.3 30.0 240 53-325 18-276 (345)
44 3iz6_a 40S ribosomal protein R 100.0 7.9E-34 2.7E-38 241.9 25.5 251 50-325 65-322 (380)
45 4g56_B MGC81050 protein; prote 100.0 1.2E-33 4.1E-38 238.6 26.3 267 16-325 18-294 (357)
46 3frx_A Guanine nucleotide-bind 100.0 1.7E-32 5.7E-37 228.2 32.3 239 49-323 15-259 (319)
47 3odt_A Protein DOA1; ubiquitin 100.0 4.4E-32 1.5E-36 224.7 34.6 259 15-325 30-289 (313)
48 3ei3_B DNA damage-binding prot 100.0 1.7E-32 5.8E-37 233.9 32.8 266 15-325 87-375 (383)
49 2pm9_A Protein WEB1, protein t 100.0 1.9E-33 6.5E-38 242.2 25.9 275 15-326 80-408 (416)
50 3v7d_B Cell division control p 100.0 2.4E-32 8.2E-37 238.8 33.0 268 15-324 133-455 (464)
51 2hes_X YDR267CP; beta-propelle 100.0 1.6E-32 5.4E-37 229.4 30.0 242 51-325 14-273 (330)
52 3dw8_B Serine/threonine-protei 100.0 1.2E-32 4E-37 239.5 30.1 289 15-323 41-438 (447)
53 4h5i_A Guanine nucleotide-exch 100.0 9.5E-33 3.3E-37 233.7 28.4 228 70-326 99-337 (365)
54 3gre_A Serine/threonine-protei 100.0 3.6E-33 1.2E-37 242.2 26.0 280 15-325 77-433 (437)
55 4ery_A WD repeat-containing pr 100.0 1.6E-31 5.5E-36 221.5 33.4 237 49-325 21-261 (312)
56 3vl1_A 26S proteasome regulato 100.0 1.1E-31 3.8E-36 231.6 33.1 265 15-324 110-411 (420)
57 3bg1_A Protein SEC13 homolog; 100.0 7.8E-33 2.7E-37 229.9 23.9 243 50-325 12-286 (316)
58 4e54_B DNA damage-binding prot 100.0 3.2E-32 1.1E-36 236.1 28.4 271 15-325 133-423 (435)
59 1yfq_A Cell cycle arrest prote 100.0 1.5E-31 5.3E-36 224.3 31.3 271 15-324 24-315 (342)
60 1erj_A Transcriptional repress 100.0 1.9E-31 6.4E-36 228.2 31.4 239 54-325 67-334 (393)
61 2aq5_A Coronin-1A; WD40 repeat 100.0 6.2E-32 2.1E-36 231.9 28.5 265 17-319 50-331 (402)
62 3mkq_A Coatomer beta'-subunit; 100.0 2.4E-31 8.4E-36 247.8 34.6 266 15-323 26-294 (814)
63 1pgu_A Actin interacting prote 100.0 1.2E-32 4.3E-37 248.6 25.1 279 14-325 264-607 (615)
64 2xzm_R RACK1; ribosome, transl 100.0 5.5E-31 1.9E-35 221.3 33.2 227 64-324 38-277 (343)
65 3dwl_C Actin-related protein 2 100.0 2.3E-32 7.8E-37 232.5 22.9 271 15-325 24-372 (377)
66 2oaj_A Protein SNI1; WD40 repe 100.0 1.9E-30 6.5E-35 242.7 37.0 280 15-325 30-598 (902)
67 2pm7_B Protein transport prote 100.0 4.9E-31 1.7E-35 217.1 29.3 241 15-288 22-284 (297)
68 3bg1_A Protein SEC13 homolog; 100.0 1.3E-31 4.4E-36 222.5 25.8 242 15-288 26-292 (316)
69 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-30 4.3E-35 218.7 31.3 258 50-325 10-330 (351)
70 3mmy_A MRNA export factor; mRN 100.0 1.6E-30 5.4E-35 220.0 32.0 269 15-325 55-339 (368)
71 1gxr_A ESG1, transducin-like e 100.0 1.5E-30 5.2E-35 217.6 31.5 238 52-325 52-289 (337)
72 2xyi_A Probable histone-bindin 100.0 1.9E-30 6.4E-35 224.6 32.8 232 65-325 141-403 (430)
73 3dwl_C Actin-related protein 2 100.0 6.9E-33 2.3E-37 235.8 17.1 229 62-324 20-274 (377)
74 3lrv_A PRE-mRNA-splicing facto 100.0 7.2E-32 2.5E-36 226.7 23.0 229 64-325 47-285 (343)
75 1sq9_A Antiviral protein SKI8; 100.0 5E-31 1.7E-35 225.7 28.3 251 49-325 14-315 (397)
76 3lrv_A PRE-mRNA-splicing facto 100.0 2.1E-31 7E-36 223.9 25.2 259 15-325 49-326 (343)
77 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-30 5.1E-35 220.7 29.7 233 54-325 11-267 (372)
78 4a11_B DNA excision repair pro 100.0 1.9E-30 6.5E-35 222.6 29.7 267 23-325 22-358 (408)
79 3jrp_A Fusion protein of prote 100.0 2.7E-30 9.2E-35 219.5 30.2 242 51-325 11-280 (379)
80 2j04_B YDR362CP, TAU91; beta p 100.0 1.8E-31 6.2E-36 234.8 22.8 239 65-325 173-421 (524)
81 4gq1_A NUP37; propeller, trans 100.0 1.2E-30 4.2E-35 223.1 26.9 245 65-324 101-382 (393)
82 3dm0_A Maltose-binding peripla 100.0 4.9E-30 1.7E-34 235.0 32.5 239 49-322 380-623 (694)
83 3sfz_A APAF-1, apoptotic pepti 100.0 7.1E-30 2.4E-34 248.0 35.3 274 15-325 628-906 (1249)
84 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-30 8.7E-35 251.1 32.0 276 15-325 670-1027(1249)
85 3gre_A Serine/threonine-protei 100.0 8.8E-31 3E-35 227.2 24.9 258 41-325 54-352 (437)
86 3dw8_B Serine/threonine-protei 100.0 2.1E-30 7.3E-35 225.2 26.6 254 50-325 27-366 (447)
87 1r5m_A SIR4-interacting protei 100.0 2.3E-29 7.7E-34 217.0 32.6 247 54-325 48-354 (425)
88 2oaj_A Protein SNI1; WD40 repe 100.0 1.6E-29 5.4E-34 236.5 33.5 293 15-325 165-654 (902)
89 3zwl_B Eukaryotic translation 100.0 1.9E-29 6.6E-34 213.4 30.6 242 50-323 31-281 (369)
90 4aow_A Guanine nucleotide-bind 100.0 4.6E-29 1.6E-33 208.9 31.7 268 19-325 9-279 (340)
91 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-29 4E-34 212.8 27.9 256 15-296 24-344 (351)
92 3mkq_A Coatomer beta'-subunit; 100.0 4.1E-29 1.4E-33 232.8 32.2 236 51-325 13-252 (814)
93 3jrp_A Fusion protein of prote 100.0 2.4E-29 8.1E-34 213.7 27.8 243 15-290 24-288 (379)
94 4e54_B DNA damage-binding prot 100.0 8.9E-30 3E-34 220.8 24.8 235 52-321 120-364 (435)
95 3k26_A Polycomb protein EED; W 100.0 6.6E-30 2.3E-34 216.1 23.4 249 49-325 16-311 (366)
96 2w18_A PALB2, fancn, partner a 100.0 1.8E-28 6.1E-33 199.5 30.3 266 37-325 23-350 (356)
97 3i2n_A WD repeat-containing pr 100.0 5.4E-29 1.8E-33 209.9 27.7 245 15-292 81-356 (357)
98 3v7d_B Cell division control p 100.0 1E-28 3.4E-33 215.9 30.4 227 65-325 132-374 (464)
99 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.5E-28 8.6E-33 212.6 32.6 232 54-321 105-374 (450)
100 3ei3_B DNA damage-binding prot 100.0 7.3E-29 2.5E-33 211.4 28.7 237 50-325 72-332 (383)
101 4h5i_A Guanine nucleotide-exch 100.0 1.8E-29 6.2E-34 213.6 24.2 235 15-289 95-343 (365)
102 1p22_A F-BOX/WD-repeat protein 100.0 4.2E-28 1.4E-32 210.3 33.3 224 50-325 132-358 (435)
103 3jro_A Fusion protein of prote 100.0 1.8E-29 6.1E-34 232.8 25.3 243 50-325 8-278 (753)
104 4aez_A CDC20, WD repeat-contai 100.0 3.1E-28 1.1E-32 208.9 30.7 219 67-325 105-329 (401)
105 3odt_A Protein DOA1; ubiquitin 100.0 3.1E-28 1E-32 201.5 29.5 238 41-325 10-248 (313)
106 4a11_B DNA excision repair pro 100.0 4.2E-28 1.4E-32 208.0 30.8 257 15-298 57-374 (408)
107 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-27 5.2E-32 207.3 32.8 222 65-325 129-384 (445)
108 1pgu_A Actin interacting prote 100.0 1.2E-27 4E-32 216.0 33.2 269 16-325 32-321 (615)
109 4gga_A P55CDC, cell division c 100.0 8.8E-28 3E-32 207.3 30.5 240 15-299 160-405 (420)
110 1yfq_A Cell cycle arrest prote 100.0 2.5E-28 8.4E-33 204.7 26.0 237 49-325 9-275 (342)
111 1l0q_A Surface layer protein; 100.0 2.4E-26 8.3E-31 196.3 36.7 258 15-325 3-268 (391)
112 2aq5_A Coronin-1A; WD40 repeat 100.0 4.9E-28 1.7E-32 207.7 25.9 231 68-325 50-292 (402)
113 3vu4_A KMHSV2; beta-propeller 100.0 2E-27 6.9E-32 200.4 28.3 253 15-325 32-329 (355)
114 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.7E-27 1.6E-31 204.6 30.3 195 104-325 103-332 (450)
115 3jro_A Fusion protein of prote 100.0 1.1E-27 3.7E-32 220.9 25.3 242 15-289 22-285 (753)
116 3vu4_A KMHSV2; beta-propeller 100.0 1E-26 3.5E-31 196.0 27.4 224 51-325 19-264 (355)
117 3bws_A Protein LP49; two-domai 100.0 1.5E-25 5E-30 194.0 34.6 263 15-325 135-425 (433)
118 2j04_A TAU60, YPL007P, hypothe 100.0 5.5E-27 1.9E-31 202.6 25.1 247 15-324 28-290 (588)
119 4gq1_A NUP37; propeller, trans 100.0 5.6E-27 1.9E-31 200.4 24.9 253 15-287 102-387 (393)
120 4ggc_A P55CDC, cell division c 100.0 4.6E-26 1.6E-30 188.9 29.4 233 15-291 80-317 (318)
121 2xyi_A Probable histone-bindin 100.0 3.5E-26 1.2E-30 197.9 29.1 244 15-290 142-411 (430)
122 2w18_A PALB2, fancn, partner a 100.0 3.5E-26 1.2E-30 186.0 27.1 241 9-287 49-355 (356)
123 3mmy_A MRNA export factor; mRN 100.0 1.3E-25 4.4E-30 189.8 28.0 236 49-325 37-297 (368)
124 2j04_A TAU60, YPL007P, hypothe 99.9 1.2E-24 4.1E-29 188.1 24.5 263 15-321 55-350 (588)
125 3bws_A Protein LP49; two-domai 99.9 1.3E-23 4.5E-28 181.8 30.9 262 19-322 94-365 (433)
126 1l0q_A Surface layer protein; 99.9 4.6E-23 1.6E-27 175.9 31.0 212 67-321 4-219 (391)
127 2ojh_A Uncharacterized protein 99.9 1.6E-22 5.4E-27 165.5 24.2 258 18-323 16-293 (297)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.2E-22 2.1E-26 170.2 25.1 214 66-323 144-375 (415)
129 1nir_A Nitrite reductase; hemo 99.9 8.5E-21 2.9E-25 168.1 29.8 271 15-319 191-496 (543)
130 1ri6_A Putative isomerase YBHE 99.9 4.2E-20 1.4E-24 154.5 30.9 267 17-324 8-300 (343)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.9E-20 2E-24 157.9 31.5 246 15-314 144-410 (415)
132 3vgz_A Uncharacterized protein 99.9 1.7E-19 5.9E-24 151.5 33.0 261 23-322 68-334 (353)
133 1pby_B Quinohemoprotein amine 99.9 3.2E-20 1.1E-24 154.8 27.8 264 16-325 3-303 (337)
134 1nir_A Nitrite reductase; hemo 99.9 5.2E-20 1.8E-24 163.1 29.4 260 15-320 150-439 (543)
135 2oit_A Nucleoporin 214KDA; NH2 99.9 2.9E-21 1E-25 166.7 19.2 188 122-319 47-258 (434)
136 3u4y_A Uncharacterized protein 99.9 2.3E-19 7.8E-24 149.5 28.5 265 14-323 10-294 (331)
137 3hfq_A Uncharacterized protein 99.9 1.8E-18 6.2E-23 145.1 30.2 264 22-322 14-306 (347)
138 1ri6_A Putative isomerase YBHE 99.9 4.6E-18 1.6E-22 142.0 30.9 266 16-314 51-335 (343)
139 2ojh_A Uncharacterized protein 99.8 3.9E-19 1.3E-23 145.2 21.7 213 71-323 18-238 (297)
140 3vgz_A Uncharacterized protein 99.8 8.4E-18 2.9E-22 141.2 29.8 222 63-324 50-295 (353)
141 1jmx_B Amine dehydrogenase; ox 99.8 1.6E-18 5.5E-23 145.2 23.1 223 63-325 9-318 (349)
142 2z3z_A Dipeptidyl aminopeptida 99.8 5.5E-18 1.9E-22 155.5 27.4 267 20-321 97-420 (706)
143 2ecf_A Dipeptidyl peptidase IV 99.8 1.9E-18 6.4E-23 159.5 23.8 233 59-323 114-402 (741)
144 2z3z_A Dipeptidyl aminopeptida 99.8 1.1E-18 3.7E-23 160.2 21.9 271 15-322 36-376 (706)
145 3u4y_A Uncharacterized protein 99.8 3E-17 1E-21 136.7 27.8 218 65-321 10-240 (331)
146 2oit_A Nucleoporin 214KDA; NH2 99.8 2.1E-18 7.3E-23 148.8 21.3 205 64-290 47-279 (434)
147 3scy_A Hypothetical bacterial 99.8 7.1E-16 2.4E-20 130.0 35.1 271 16-310 63-360 (361)
148 2ecf_A Dipeptidyl peptidase IV 99.8 6.2E-18 2.1E-22 156.0 24.3 242 61-325 44-360 (741)
149 3scy_A Hypothetical bacterial 99.8 3.5E-16 1.2E-20 131.9 32.9 267 15-321 14-325 (361)
150 1xfd_A DIP, dipeptidyl aminope 99.8 1.1E-17 3.8E-22 153.9 25.4 271 15-322 28-380 (723)
151 1k32_A Tricorn protease; prote 99.8 1.4E-17 4.9E-22 159.0 26.9 263 16-324 216-494 (1045)
152 3hfq_A Uncharacterized protein 99.8 1.6E-16 5.5E-21 133.2 28.0 252 16-293 52-323 (347)
153 3o4h_A Acylamino-acid-releasin 99.8 2.6E-17 8.9E-22 147.7 24.3 251 15-324 34-304 (582)
154 1jmx_B Amine dehydrogenase; ox 99.8 1.1E-16 3.9E-21 133.9 26.3 250 15-298 12-334 (349)
155 1xfd_A DIP, dipeptidyl aminope 99.8 2.2E-18 7.6E-23 158.5 16.7 232 61-319 24-323 (723)
156 1jof_A Carboxy-CIS,CIS-muconat 99.8 6.5E-16 2.2E-20 130.5 29.7 273 15-322 3-330 (365)
157 3o4h_A Acylamino-acid-releasin 99.8 1.6E-17 5.4E-22 149.2 20.6 224 54-325 24-269 (582)
158 1pby_B Quinohemoprotein amine 99.8 2.7E-16 9.3E-21 130.9 24.9 233 16-299 48-320 (337)
159 1k32_A Tricorn protease; prote 99.7 3.1E-15 1.1E-19 142.9 25.4 214 66-323 215-442 (1045)
160 1z68_A Fibroblast activation p 99.7 4.3E-16 1.5E-20 143.3 18.4 273 15-322 27-376 (719)
161 2oiz_A Aromatic amine dehydrog 99.7 6.9E-15 2.4E-19 123.9 23.7 265 22-314 29-360 (361)
162 1q7f_A NHL, brain tumor CG1071 99.7 1.2E-13 4.2E-18 112.4 30.4 229 63-325 39-273 (286)
163 3fvz_A Peptidyl-glycine alpha- 99.7 3.1E-14 1.1E-18 118.4 26.7 225 75-325 69-315 (329)
164 1z68_A Fibroblast activation p 99.7 1.1E-16 3.8E-21 147.2 12.5 233 62-323 24-335 (719)
165 3no2_A Uncharacterized protein 99.7 1E-13 3.6E-18 112.0 26.2 221 64-319 4-230 (276)
166 4a5s_A Dipeptidyl peptidase 4 99.7 6E-15 2.1E-19 136.0 19.0 233 61-320 24-338 (740)
167 1q7f_A NHL, brain tumor CG1071 99.6 1.1E-12 3.7E-17 106.8 29.2 230 17-291 44-282 (286)
168 3pe7_A Oligogalacturonate lyas 99.6 9.2E-14 3.2E-18 118.1 22.1 260 16-321 49-370 (388)
169 1jof_A Carboxy-CIS,CIS-muconat 99.6 3.7E-13 1.3E-17 113.6 25.3 242 16-290 53-342 (365)
170 3dsm_A Uncharacterized protein 99.6 1.6E-12 5.4E-17 108.0 27.3 248 21-319 14-285 (328)
171 3e5z_A Putative gluconolactona 99.6 9.6E-13 3.3E-17 107.7 24.0 219 61-324 35-279 (296)
172 2oiz_A Aromatic amine dehydrog 99.6 2.3E-13 7.7E-18 114.6 20.6 220 73-321 29-324 (361)
173 2dg1_A DRP35, lactonase; beta 99.6 7.1E-12 2.4E-16 104.2 28.6 223 62-322 53-300 (333)
174 4a5s_A Dipeptidyl peptidase 4 99.6 8.4E-13 2.9E-17 121.7 24.9 273 16-320 29-382 (740)
175 3no2_A Uncharacterized protein 99.6 1.2E-11 4.1E-16 99.9 27.2 238 12-298 3-261 (276)
176 1rwi_B Serine/threonine-protei 99.6 3.9E-12 1.3E-16 102.5 24.1 224 63-325 33-257 (270)
177 3azo_A Aminopeptidase; POP fam 99.5 2.1E-12 7.3E-17 117.6 24.8 233 59-322 84-357 (662)
178 1xip_A Nucleoporin NUP159; bet 99.5 7.6E-13 2.6E-17 110.9 19.6 179 105-319 39-231 (388)
179 3dsm_A Uncharacterized protein 99.5 3.1E-11 1.1E-15 100.2 28.1 245 16-309 56-319 (328)
180 1qks_A Cytochrome CD1 nitrite 99.5 5.1E-11 1.8E-15 105.6 30.1 273 15-319 168-520 (567)
181 2xdw_A Prolyl endopeptidase; a 99.5 1.1E-10 3.7E-15 107.2 32.5 224 58-317 129-395 (710)
182 3azo_A Aminopeptidase; POP fam 99.5 2.2E-12 7.4E-17 117.5 20.9 149 162-324 129-315 (662)
183 3c5m_A Oligogalacturonate lyas 99.5 2.5E-12 8.4E-17 109.4 20.0 228 61-322 88-371 (396)
184 2z2n_A Virginiamycin B lyase; 99.5 7.2E-10 2.4E-14 90.3 33.9 255 16-323 27-287 (299)
185 1qks_A Cytochrome CD1 nitrite 99.5 1.1E-10 3.7E-15 103.5 27.8 206 66-298 168-382 (567)
186 3fvz_A Peptidyl-glycine alpha- 99.4 1.5E-10 5E-15 96.2 26.1 152 162-318 90-256 (329)
187 2z2n_A Virginiamycin B lyase; 99.4 8.4E-10 2.9E-14 89.9 30.2 219 63-323 24-246 (299)
188 2gop_A Trilobed protease; beta 99.4 7.6E-11 2.6E-15 98.5 24.0 212 59-325 64-323 (347)
189 3pe7_A Oligogalacturonate lyas 99.4 5.9E-11 2E-15 100.7 22.7 179 122-321 46-257 (388)
190 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.3E-10 4.3E-15 95.7 23.7 222 63-320 27-286 (314)
191 2qc5_A Streptogramin B lactona 99.4 4.2E-09 1.4E-13 85.8 32.4 248 22-320 39-290 (300)
192 3g4e_A Regucalcin; six bladed 99.4 5.4E-10 1.9E-14 91.3 25.5 214 65-321 25-261 (297)
193 3q7m_A Lipoprotein YFGL, BAMB; 99.4 2E-09 6.7E-14 91.1 29.0 263 15-325 54-371 (376)
194 3c5m_A Oligogalacturonate lyas 99.4 3.1E-11 1.1E-15 102.6 17.8 219 61-321 43-302 (396)
195 2hz6_A Endoplasmic reticulum t 99.4 5.5E-13 1.9E-17 112.5 6.7 203 65-314 9-216 (369)
196 1rwi_B Serine/threonine-protei 99.4 3.3E-10 1.1E-14 91.1 22.4 223 21-291 43-266 (270)
197 3sjl_D Methylamine dehydrogena 99.4 3.1E-09 1.1E-13 88.8 28.5 269 15-325 45-356 (386)
198 2dg1_A DRP35, lactonase; beta 99.3 4.9E-10 1.7E-14 93.1 23.2 217 68-323 20-254 (333)
199 1kb0_A Quinohemoprotein alcoho 99.3 8.2E-10 2.8E-14 100.4 26.0 275 15-325 78-500 (677)
200 2mad_H Methylamine dehydrogena 99.3 3.7E-09 1.3E-13 89.1 28.3 219 76-325 48-343 (373)
201 2gop_A Trilobed protease; beta 99.3 5.4E-10 1.8E-14 93.3 22.9 195 74-324 42-284 (347)
202 2qc5_A Streptogramin B lactona 99.3 1.4E-08 4.7E-13 82.7 30.5 218 63-323 29-251 (300)
203 2bkl_A Prolyl endopeptidase; m 99.3 1.4E-09 4.7E-14 99.7 26.8 225 57-317 124-378 (695)
204 3e5z_A Putative gluconolactona 99.3 1.1E-09 3.9E-14 89.3 23.6 173 125-319 42-235 (296)
205 3hrp_A Uncharacterized protein 99.3 1.1E-08 3.8E-13 87.4 29.7 229 62-324 139-402 (409)
206 1yiq_A Quinohemoprotein alcoho 99.3 7.7E-09 2.6E-13 94.2 28.9 275 15-325 71-498 (689)
207 2ghs_A AGR_C_1268P; regucalcin 99.3 1.1E-08 3.9E-13 84.6 27.3 211 65-320 61-290 (326)
208 1yiq_A Quinohemoprotein alcoho 99.3 8.6E-10 2.9E-14 100.4 21.3 82 236-319 454-536 (689)
209 2xdw_A Prolyl endopeptidase; a 99.3 2.6E-09 9E-14 98.0 24.7 192 105-324 126-358 (710)
210 1xip_A Nucleoporin NUP159; bet 99.3 7.8E-11 2.7E-15 98.8 13.2 145 163-325 38-184 (388)
211 3c75_H MADH, methylamine dehyd 99.3 8.5E-09 2.9E-13 87.6 25.5 261 24-325 99-395 (426)
212 1kb0_A Quinohemoprotein alcoho 99.2 5.1E-10 1.7E-14 101.7 18.7 139 175-317 328-535 (677)
213 2mad_H Methylamine dehydrogena 99.2 1.2E-07 4.1E-12 79.9 30.6 256 15-296 33-357 (373)
214 1yr2_A Prolyl oligopeptidase; 99.2 7.8E-09 2.7E-13 95.4 25.1 223 58-317 167-422 (741)
215 3dr2_A Exported gluconolactona 99.2 7.9E-09 2.7E-13 84.7 20.9 214 61-323 52-298 (305)
216 3sjl_D Methylamine dehydrogena 99.2 1.9E-08 6.6E-13 84.0 23.1 251 22-312 107-384 (386)
217 2bkl_A Prolyl endopeptidase; m 99.1 6.7E-09 2.3E-13 95.1 21.4 188 105-324 122-341 (695)
218 2ece_A 462AA long hypothetical 99.1 9.7E-08 3.3E-12 80.6 25.8 230 64-320 94-399 (462)
219 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 2.3E-07 7.8E-12 76.0 27.1 118 164-289 173-299 (314)
220 3c75_H MADH, methylamine dehyd 99.1 6.2E-08 2.1E-12 82.4 23.9 238 22-296 147-409 (426)
221 2hz6_A Endoplasmic reticulum t 99.1 2.2E-11 7.4E-16 102.7 1.5 173 122-324 8-184 (369)
222 3hrp_A Uncharacterized protein 99.1 6.6E-07 2.3E-11 76.3 29.0 235 17-287 144-408 (409)
223 1mda_H Methylamine dehydrogena 99.1 1.4E-07 4.7E-12 78.9 24.1 259 25-311 47-366 (368)
224 3hxj_A Pyrrolo-quinoline quino 99.1 9.3E-08 3.2E-12 79.0 23.2 210 65-324 107-316 (330)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.1 8.8E-08 3E-12 80.8 23.1 231 15-286 104-375 (376)
226 2qe8_A Uncharacterized protein 99.1 4.3E-07 1.5E-11 75.7 26.9 239 63-322 26-311 (343)
227 1kv9_A Type II quinohemoprotei 99.0 3.7E-07 1.3E-11 82.9 28.0 274 15-325 67-481 (668)
228 2ad6_A Methanol dehydrogenase 99.0 2E-07 6.8E-12 83.0 24.2 273 15-325 63-487 (571)
229 2iwa_A Glutamine cyclotransfer 99.0 1.7E-06 5.8E-11 68.5 25.7 182 106-320 23-224 (266)
230 1yr2_A Prolyl oligopeptidase; 99.0 1.1E-07 3.7E-12 87.7 21.2 180 122-324 173-385 (741)
231 1mda_H Methylamine dehydrogena 98.9 5.3E-08 1.8E-12 81.4 17.1 217 76-325 47-339 (368)
232 3g4e_A Regucalcin; six bladed 98.9 9.3E-07 3.2E-11 72.0 23.8 176 124-323 26-220 (297)
233 1kv9_A Type II quinohemoprotei 98.9 1.1E-07 3.7E-12 86.4 19.0 61 236-298 437-497 (668)
234 3iuj_A Prolyl endopeptidase; h 98.9 4E-07 1.4E-11 83.3 22.7 223 59-319 134-388 (693)
235 2ad6_A Methanol dehydrogenase 98.9 3E-06 1E-10 75.4 27.0 80 235-317 442-522 (571)
236 1w6s_A Methanol dehydrogenase 98.9 2.5E-06 8.5E-11 76.1 26.1 211 15-255 63-350 (599)
237 3hxj_A Pyrrolo-quinoline quino 98.9 1.5E-07 5.1E-12 77.7 16.9 244 15-323 31-275 (330)
238 2ghs_A AGR_C_1268P; regucalcin 98.9 1.2E-05 4.1E-10 66.3 28.4 217 17-279 64-292 (326)
239 3mbr_X Glutamine cyclotransfer 98.9 1.1E-05 3.8E-10 62.6 25.9 182 104-320 21-222 (243)
240 3nok_A Glutaminyl cyclase; bet 98.8 4.7E-06 1.6E-10 65.3 23.7 172 123-320 65-253 (268)
241 1w6s_A Methanol dehydrogenase 98.8 3.8E-06 1.3E-10 74.9 24.9 81 235-318 451-533 (599)
242 3nol_A Glutamine cyclotransfer 98.8 9E-06 3.1E-10 63.7 24.1 172 124-320 54-243 (262)
243 1fwx_A Nitrous oxide reductase 98.8 3E-06 1E-10 74.1 23.4 229 68-324 18-353 (595)
244 3dr2_A Exported gluconolactona 98.7 5E-06 1.7E-10 67.9 21.1 172 125-319 59-256 (305)
245 2ece_A 462AA long hypothetical 98.7 1.5E-05 5E-10 67.5 23.7 234 15-277 97-399 (462)
246 1flg_A Protein (quinoprotein e 98.7 3.2E-05 1.1E-09 68.9 27.0 136 184-325 291-509 (582)
247 1flg_A Protein (quinoprotein e 98.7 6.6E-06 2.3E-10 73.4 22.5 79 236-318 465-546 (582)
248 1fwx_A Nitrous oxide reductase 98.7 1.1E-06 3.8E-11 76.8 16.9 272 15-320 16-406 (595)
249 2iwa_A Glutamine cyclotransfer 98.6 7E-06 2.4E-10 65.0 19.3 151 153-319 11-168 (266)
250 2qe8_A Uncharacterized protein 98.6 4.6E-06 1.6E-10 69.4 18.9 155 163-323 17-216 (343)
251 2p4o_A Hypothetical protein; p 98.6 0.00016 5.4E-09 59.0 28.6 225 62-322 40-278 (306)
252 1npe_A Nidogen, entactin; glyc 98.6 0.00015 5E-09 57.9 30.0 210 66-314 49-263 (267)
253 3nol_A Glutamine cyclotransfer 98.6 8.1E-05 2.8E-09 58.3 22.7 177 66-278 54-244 (262)
254 4a2l_A BT_4663, two-component 98.5 0.00063 2.2E-08 63.2 34.7 223 67-319 227-469 (795)
255 3qqz_A Putative uncharacterize 98.5 0.00015 5.1E-09 57.0 22.9 208 52-288 27-252 (255)
256 3nok_A Glutaminyl cyclase; bet 98.5 0.0001 3.5E-09 57.8 21.1 176 65-277 65-253 (268)
257 2fp8_A Strictosidine synthase; 98.4 0.00021 7.2E-09 58.7 23.9 223 63-319 28-300 (322)
258 3iuj_A Prolyl endopeptidase; h 98.4 3.2E-05 1.1E-09 70.7 19.3 143 166-323 178-347 (693)
259 3qqz_A Putative uncharacterize 98.3 0.00057 1.9E-08 53.7 25.6 197 104-319 27-241 (255)
260 3mbr_X Glutamine cyclotransfer 98.3 0.00025 8.5E-09 55.1 20.0 148 153-317 11-164 (243)
261 4a2l_A BT_4663, two-component 98.2 0.0032 1.1E-07 58.5 35.6 225 68-320 276-516 (795)
262 3v65_B Low-density lipoprotein 98.1 0.0027 9.4E-08 53.5 28.1 206 55-298 119-327 (386)
263 1k3i_A Galactose oxidase precu 98.1 0.00061 2.1E-08 61.9 21.3 93 226-321 410-530 (656)
264 1npe_A Nidogen, entactin; glyc 98.1 0.0022 7.4E-08 50.9 24.6 144 163-320 36-185 (267)
265 3v65_B Low-density lipoprotein 98.0 0.0055 1.9E-07 51.6 26.0 206 65-309 87-296 (386)
266 2fp8_A Strictosidine synthase; 97.9 0.0049 1.7E-07 50.4 21.8 178 123-320 30-247 (322)
267 3pbp_A Nucleoporin NUP82; beta 97.9 0.00067 2.3E-08 56.8 16.0 126 153-285 53-208 (452)
268 3v64_C Agrin; beta propeller, 97.9 0.0079 2.7E-07 49.9 28.7 195 66-297 86-283 (349)
269 2xe4_A Oligopeptidase B; hydro 97.9 0.0002 7E-09 66.0 13.2 146 164-322 175-340 (751)
270 3v9f_A Two-component system se 97.8 0.019 6.7E-07 53.1 30.1 231 68-319 224-467 (781)
271 3v9f_A Two-component system se 97.8 0.022 7.6E-07 52.8 33.6 231 53-320 314-557 (781)
272 2xzh_A Clathrin heavy chain 1; 97.7 0.011 3.8E-07 47.7 27.6 207 63-306 76-306 (365)
273 3amr_A 3-phytase; beta-propell 97.7 0.012 4.2E-07 48.2 22.5 197 67-297 42-272 (355)
274 2xe4_A Oligopeptidase B; hydro 97.7 0.023 7.8E-07 52.4 24.0 192 59-287 179-398 (751)
275 3v64_C Agrin; beta propeller, 97.7 0.017 6E-07 47.8 28.7 204 66-309 45-253 (349)
276 3tc9_A Hypothetical hydrolase; 97.6 0.0051 1.8E-07 52.6 17.8 143 164-319 138-287 (430)
277 1n7d_A LDL receptor, low-densi 97.6 0.0011 3.9E-08 60.4 14.4 162 125-309 467-633 (699)
278 1ijq_A LDL receptor, low-densi 97.5 0.025 8.4E-07 46.2 24.5 165 131-319 8-181 (316)
279 1ijq_A LDL receptor, low-densi 97.5 0.031 1E-06 45.6 30.4 229 23-297 9-246 (316)
280 1bpo_A Protein (clathrin); cla 97.4 0.049 1.7E-06 45.9 27.0 210 64-310 76-309 (494)
281 3sov_A LRP-6, low-density lipo 97.3 0.044 1.5E-06 44.7 27.6 232 23-297 12-246 (318)
282 2p4o_A Hypothetical protein; p 97.3 0.044 1.5E-06 44.4 24.4 100 165-280 171-279 (306)
283 3ei3_A DNA damage-binding prot 97.3 0.032 1.1E-06 53.8 20.5 220 23-286 806-1059(1158)
284 2p9w_A MAL S 1 allergenic prot 97.2 0.024 8.2E-07 46.1 15.7 155 123-290 24-216 (334)
285 2p9w_A MAL S 1 allergenic prot 97.2 0.066 2.3E-06 43.5 18.1 152 165-323 15-206 (334)
286 1k3i_A Galactose oxidase precu 97.1 0.059 2E-06 48.8 19.2 71 166-246 246-323 (656)
287 3m0c_C LDL receptor, low-densi 97.1 0.17 5.9E-06 46.7 29.4 203 55-297 427-640 (791)
288 3sre_A PON1, serum paraoxonase 97.1 0.097 3.3E-06 43.3 22.9 170 131-323 81-288 (355)
289 3amr_A 3-phytase; beta-propell 97.1 0.096 3.3E-06 43.0 25.2 217 15-255 41-272 (355)
290 3p5b_L Low density lipoprotein 97.1 0.11 3.9E-06 43.8 31.2 231 22-298 90-329 (400)
291 4hw6_A Hypothetical protein, I 97.0 0.13 4.5E-06 43.9 26.0 146 163-319 228-420 (433)
292 3sov_A LRP-6, low-density lipo 97.0 0.1 3.6E-06 42.5 24.9 205 67-310 6-217 (318)
293 2be1_A Serine/threonine-protei 97.0 0.007 2.4E-07 49.6 10.7 199 67-294 12-236 (339)
294 3kya_A Putative phosphatase; s 97.0 0.063 2.2E-06 46.5 16.9 147 164-319 140-327 (496)
295 3m0c_C LDL receptor, low-densi 96.9 0.26 9E-06 45.5 26.9 189 67-290 397-590 (791)
296 3kya_A Putative phosphatase; s 96.9 0.19 6.5E-06 43.5 24.2 209 56-292 143-412 (496)
297 4hw6_A Hypothetical protein, I 96.8 0.14 4.9E-06 43.7 18.1 143 164-319 140-290 (433)
298 1n7d_A LDL receptor, low-densi 96.8 0.019 6.5E-07 52.4 13.2 182 74-289 385-571 (699)
299 3p5b_L Low density lipoprotein 96.8 0.19 6.5E-06 42.4 28.7 191 66-290 84-278 (400)
300 2be1_A Serine/threonine-protei 96.8 0.17 5.7E-06 41.5 17.3 116 15-144 11-132 (339)
301 1xi4_A Clathrin heavy chain; a 96.7 0.38 1.3E-05 47.0 20.6 197 64-296 76-296 (1630)
302 3tc9_A Hypothetical hydrolase; 96.6 0.28 9.5E-06 41.9 26.2 155 123-288 237-429 (430)
303 3pbp_A Nucleoporin NUP82; beta 96.6 0.24 8.1E-06 41.8 16.6 98 216-318 68-196 (452)
304 3a9g_A Putative uncharacterize 96.5 0.3 1E-05 40.4 26.1 229 68-320 42-330 (354)
305 3sre_A PON1, serum paraoxonase 96.1 0.46 1.6E-05 39.3 21.0 190 73-288 81-297 (355)
306 3ei3_A DNA damage-binding prot 96.1 1.1 3.9E-05 43.3 27.7 64 227-294 844-918 (1158)
307 2ism_A Putative oxidoreductase 95.9 0.56 1.9E-05 38.7 23.8 59 260-320 269-333 (352)
308 3s94_A LRP-6, low-density lipo 95.8 1.1 3.6E-05 40.3 24.1 237 17-297 11-251 (619)
309 2g8s_A Glucose/sorbosone dehyd 95.7 0.45 1.5E-05 39.3 14.7 149 164-317 19-213 (353)
310 3ii7_A Kelch-like protein 7; p 95.7 0.61 2.1E-05 37.4 20.0 133 173-323 101-258 (306)
311 2xn4_A Kelch-like protein 2; s 95.6 0.69 2.4E-05 37.0 18.6 133 173-323 108-262 (302)
312 1tl2_A L10, protein (tachylect 95.5 0.35 1.2E-05 36.8 11.7 144 164-319 42-199 (236)
313 3a9g_A Putative uncharacterize 95.5 0.23 7.7E-06 41.2 12.1 102 216-321 31-154 (354)
314 3s94_A LRP-6, low-density lipo 95.4 1.5 5E-05 39.4 25.8 187 71-291 14-204 (619)
315 4a0p_A LRP6, LRP-6, low-densit 95.1 1.7 6E-05 39.0 31.8 231 21-297 12-245 (628)
316 1cru_A Protein (soluble quinop 95.1 1.5 5E-05 37.7 18.8 111 163-276 27-161 (454)
317 3das_A Putative oxidoreductase 95.0 1.2 4.1E-05 36.6 16.1 149 163-318 32-218 (347)
318 1zgk_A Kelch-like ECH-associat 95.0 1.1 3.7E-05 36.0 18.1 133 173-323 121-273 (308)
319 4a0p_A LRP6, LRP-6, low-densit 95.0 1.9 6.6E-05 38.7 28.6 206 67-311 8-217 (628)
320 2vpj_A Kelch-like protein 12; 94.9 1.1 3.9E-05 35.7 20.4 133 173-323 112-264 (301)
321 2ism_A Putative oxidoreductase 94.8 0.29 1E-05 40.4 10.8 99 216-320 33-153 (352)
322 4asc_A Kelch repeat and BTB do 94.0 1.9 6.6E-05 34.6 18.0 133 173-323 98-254 (315)
323 1cru_A Protein (soluble quinop 93.9 1.8 6E-05 37.2 13.8 104 216-321 29-163 (454)
324 2uvk_A YJHT; unknown function, 93.3 2.8 9.7E-05 34.3 15.3 40 281-323 286-327 (357)
325 2xn4_A Kelch-like protein 2; s 92.9 2.9 9.9E-05 33.3 24.8 106 173-293 155-280 (302)
326 1tl2_A L10, protein (tachylect 92.6 0.64 2.2E-05 35.4 7.9 96 215-319 42-152 (236)
327 2xzh_A Clathrin heavy chain 1; 92.6 3.6 0.00012 33.5 21.8 117 167-299 71-198 (365)
328 2xbg_A YCF48-like protein; pho 91.9 4.3 0.00015 32.9 30.2 146 162-325 162-315 (327)
329 2g8s_A Glucose/sorbosone dehyd 91.5 5.1 0.00018 32.9 23.9 61 259-319 271-340 (353)
330 2vpj_A Kelch-like protein 12; 91.4 4.4 0.00015 32.1 25.2 105 173-292 159-281 (301)
331 2woz_A Kelch repeat and BTB do 90.6 5.6 0.00019 31.9 16.5 133 173-323 109-264 (318)
332 2zwa_A Leucine carboxyl methyl 89.0 13 0.00045 33.8 20.2 141 172-322 499-675 (695)
333 2xbg_A YCF48-like protein; pho 88.9 8.1 0.00028 31.2 25.8 140 164-320 123-268 (327)
334 3uc1_A DNA gyrase subunit A; D 88.5 8.9 0.0003 31.2 22.3 209 104-324 95-322 (327)
335 2wg3_C Hedgehog-interacting pr 88.3 12 0.0004 32.2 13.7 106 216-323 16-160 (463)
336 3ii7_A Kelch-like protein 7; p 88.0 8.7 0.0003 30.5 24.5 107 173-292 149-275 (306)
337 3sbq_A Nitrous-oxide reductase 87.5 4.2 0.00014 35.7 9.6 104 212-319 321-452 (638)
338 1zgk_A Kelch-like ECH-associat 86.3 11 0.00038 30.0 23.8 106 173-293 168-291 (308)
339 4gq2_M Nucleoporin NUP120; bet 86.3 6.1 0.00021 37.5 11.0 38 260-297 237-274 (950)
340 3ott_A Two-component system se 85.1 23 0.00078 32.5 29.0 210 67-319 34-249 (758)
341 3zwu_A Alkaline phosphatase PH 84.3 4.7 0.00016 35.8 8.7 59 261-319 478-548 (592)
342 3uc1_A DNA gyrase subunit A; D 83.5 17 0.00057 29.6 21.7 204 65-288 3-227 (327)
343 4fhn_B Nucleoporin NUP120; pro 82.8 33 0.0011 33.4 14.5 38 260-297 239-276 (1139)
344 1zi0_A DNA gyrase subunit A; b 81.6 19 0.00064 28.9 24.1 204 65-288 3-225 (307)
345 4a9v_A PHOX; hydrolase, beta-p 80.6 9.2 0.00032 33.7 8.9 60 260-319 477-548 (592)
346 4asc_A Kelch repeat and BTB do 80.2 20 0.0007 28.4 21.7 108 173-295 148-283 (315)
347 4gq2_M Nucleoporin NUP120; bet 78.7 46 0.0016 31.6 14.6 38 164-201 237-274 (950)
348 3das_A Putative oxidoreductase 78.5 26 0.00089 28.7 25.2 72 250-323 254-330 (347)
349 3kci_A Probable E3 ubiquitin-p 78.4 28 0.00095 28.9 17.4 162 123-288 62-240 (389)
350 3sbq_A Nitrous-oxide reductase 76.1 18 0.00061 31.9 9.2 123 165-290 325-479 (638)
351 2zwa_A Leucine carboxyl methyl 75.8 30 0.001 31.4 11.4 107 173-291 451-579 (695)
352 2uvk_A YJHT; unknown function, 74.4 33 0.0011 27.8 23.7 57 238-296 286-349 (357)
353 4fhn_B Nucleoporin NUP120; pro 74.2 67 0.0023 31.2 15.1 37 165-201 240-276 (1139)
354 3l6v_A GYRA, DNA gyrase subuni 72.8 39 0.0013 27.9 25.8 206 64-289 6-265 (370)
355 3ott_A Two-component system se 72.6 58 0.002 29.8 32.5 208 67-317 75-294 (758)
356 2woz_A Kelch repeat and BTB do 72.0 35 0.0012 27.1 22.2 108 173-295 158-293 (318)
357 1zvt_A Topoisomerase IV subuni 70.8 35 0.0012 26.5 14.6 151 66-245 3-162 (256)
358 3no0_A DNA gyrase subunit A; D 69.7 39 0.0013 26.6 19.6 114 64-193 79-196 (276)
359 1xi4_A Clathrin heavy chain; a 69.4 98 0.0034 31.1 20.1 72 217-291 262-333 (1630)
360 1ic9_A TH10AOX; three stranded 65.2 2.3 7.9E-05 19.1 0.8 14 3-16 8-21 (29)
361 3f7f_A Nucleoporin NUP120; nuc 63.8 14 0.00049 33.5 6.2 36 260-297 223-258 (729)
362 1suu_A DNA gyrase subunit A; t 62.2 59 0.002 26.0 24.5 205 65-289 8-231 (312)
363 1bpo_A Protein (clathrin); cla 60.6 80 0.0027 27.0 29.7 72 216-290 261-332 (494)
364 3al9_A Plexin-A2; beta-propell 56.3 34 0.0012 30.0 7.3 69 216-284 402-476 (539)
365 3s25_A Hypothetical 7-bladed b 55.6 76 0.0026 25.2 19.0 124 169-319 59-201 (302)
366 1q47_A Semaphorin 3A; beta pro 55.0 66 0.0022 27.9 8.7 69 216-284 406-487 (495)
367 3f7f_A Nucleoporin NUP120; nuc 52.4 26 0.00088 31.9 5.9 36 165-202 224-259 (729)
368 1wp5_A Topoisomerase IV; broke 48.7 1E+02 0.0036 24.8 27.7 255 15-289 6-277 (323)
369 3l6v_A GYRA, DNA gyrase subuni 47.1 1.2E+02 0.0041 25.0 24.9 253 15-288 8-315 (370)
370 1suu_A DNA gyrase subunit A; t 45.3 1.2E+02 0.004 24.3 24.1 114 64-193 113-231 (312)
371 1zi0_A DNA gyrase subunit A; b 42.5 1.3E+02 0.0044 24.0 26.0 252 16-289 5-277 (307)
372 1q47_A Semaphorin 3A; beta pro 42.2 79 0.0027 27.4 7.3 64 125-188 423-487 (495)
373 1wp5_A Topoisomerase IV; broke 40.4 1.4E+02 0.0049 24.0 24.1 116 65-193 106-225 (323)
374 3b7f_A Glycosyl hydrolase, BNR 38.1 1.7E+02 0.0057 24.0 10.9 52 228-280 23-77 (394)
375 3qhy_B Beta-lactamase inhibito 37.3 1.5E+02 0.005 23.2 19.3 235 11-314 30-266 (282)
376 3b7f_A Glycosyl hydrolase, BNR 36.0 1.8E+02 0.0061 23.8 18.7 102 215-320 116-251 (394)
377 3zwu_A Alkaline phosphatase PH 35.4 1.5E+02 0.005 26.4 7.9 57 216-276 478-548 (592)
378 3ol2_B Plexin-B1; beta-propell 34.7 1.8E+02 0.006 25.5 8.2 70 216-285 389-462 (528)
379 4gz8_A Semaphorin-3A; multi-do 34.6 1.5E+02 0.0052 26.8 8.0 64 125-188 431-495 (667)
380 3oky_A Plexin-A2; transmembran 34.6 1.3E+02 0.0046 27.2 7.7 69 216-284 401-475 (681)
381 1zvu_A Topoisomerase IV subuni 34.5 2.7E+02 0.0092 25.4 12.3 92 64-171 564-666 (716)
382 4a9v_A PHOX; hydrolase, beta-p 31.4 1.7E+02 0.0058 26.0 7.5 59 215-277 477-549 (592)
383 1olz_A Semaphorin 4D; developm 30.0 1.9E+02 0.0064 26.2 7.9 56 229-284 417-477 (663)
384 2wg3_C Hedgehog-interacting pr 28.8 2.7E+02 0.0093 23.7 27.2 71 249-320 265-354 (463)
385 1zvu_A Topoisomerase IV subuni 26.6 3.7E+02 0.013 24.5 12.4 118 122-245 513-632 (716)
386 4gz8_A Semaphorin-3A; multi-do 24.1 2.4E+02 0.0083 25.5 7.4 56 229-284 431-495 (667)
387 3nvq_A Semaphorin-7A; beta-pro 23.4 3.4E+02 0.012 24.1 8.0 58 228-285 381-445 (590)
388 3oky_B Putative uncharacterize 21.7 3.1E+02 0.011 24.2 7.4 27 162-188 469-495 (565)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=283.71 Aligned_cols=266 Identities=18% Similarity=0.159 Sum_probs=223.3
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++|+.||.||||++..+ .....+.-..+...+.++.+. +.++++++++.|++|++||+.+++.+..+.
T Consensus 49 ~~l~tgs~D~~v~vW~~~~~-----~~~~~~~l~gh~~~v~~~~~~--~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~-- 119 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWKWRDE-----RLDLQWSLEGHQLGVVSVDIS--HTLPIAASSSLDAHIRLWDLENGKQIKSID-- 119 (321)
T ss_dssp CEEEEEETTSCEEEEEEETT-----EEEEEEEECCCSSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTTEEEEEEE--
T ss_pred CEEEEEcCCCCEEEEECCCC-----CeeeeeeeccCCCCEEEEEEC--CCCCEEEEEeCCCcEEEEECCCCCEEEEEe--
Confidence 46999999999999999866 333344334555566666554 445689999999999999999888777665
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.+...+..+.+.+ ++..+++++.+|.+++|+++... ....+. .+...+.+++|+|++
T Consensus 120 ------~~~~~~~~~~~sp--------dg~~l~~g~~dg~v~i~~~~~~~--------~~~~~~-~~~~~v~~~~~spdg 176 (321)
T 3ow8_A 120 ------AGPVDAWTLAFSP--------DSQYLATGTHVGKVNIFGVESGK--------KEYSLD-TRGKFILSIAYSPDG 176 (321)
T ss_dssp ------CCTTCCCCEEECT--------TSSEEEEECTTSEEEEEETTTCS--------EEEEEE-CSSSCEEEEEECTTS
T ss_pred ------CCCccEEEEEECC--------CCCEEEEEcCCCcEEEEEcCCCc--------eeEEec-CCCceEEEEEECCCC
Confidence 3335566677655 66799999999999999987543 222333 235679999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
++|++|+.|+.|++||+++++.+..+..|. ..|++++|+| ++++|++++.|++|++||++.. ..+..+
T Consensus 177 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~sp--d~~~l~s~s~dg~i~iwd~~~~-~~~~~~ 244 (321)
T 3ow8_A 177 KYLASGAIDGIINIFDIATGKLLHTLEGHA---------MPIRSLTFSP--DSQLLVTASDDGYIKIYDVQHA-NLAGTL 244 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCCCEEEECT--TSCEEEEECTTSCEEEEETTTC-CEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEcccC---------CceeEEEEcC--CCCEEEEEcCCCeEEEEECCCc-ceeEEE
Confidence 999999999999999999999888877654 4588999998 5669999999999999999976 567888
Q ss_pred eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+| .+.|.+++|+|++++|+++|.||.+
T Consensus 245 ~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~g~~l~s~~~d~~i 314 (321)
T 3ow8_A 245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH-QDQVWGVKYNGNGSKIVSVGDDQEI 314 (321)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCCE
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEEEeCCCeE
Confidence 899999999999999999999999999999999999999999998 9999999999999999999999975
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.5e-40 Score=272.72 Aligned_cols=268 Identities=15% Similarity=0.086 Sum_probs=219.8
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++++.||.|++||+.++ +....+..+.. .+.++.+.. .+++|++|+.|++|++||+.+++.+..+.
T Consensus 26 ~~l~s~~~dg~v~lWd~~~~-----~~~~~~~~~~~--~v~~~~~~~--~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-- 94 (304)
T 2ynn_A 26 PWVLTTLYSGRVELWNYETQ-----VEVRSIQVTET--PVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVDFE-- 94 (304)
T ss_dssp SEEEEEETTSEEEEEETTTT-----EEEEEEECCSS--CEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred CEEEEEcCCCcEEEEECCCC-----ceeEEeeccCC--cEEEEEEeC--CCCEEEEECCCCEEEEEECCCCcEEEEEe--
Confidence 56899999999999999876 44444443333 344555543 35589999999999999999988877765
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-C
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S 173 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 173 (326)
.|.+.|.++.+.+ ++..+++++.||.|++||++.... ....+ ..+...|.+++|+| +
T Consensus 95 ------~h~~~v~~~~~~~--------~~~~l~sgs~D~~v~lWd~~~~~~-------~~~~~-~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 95 ------AHPDYIRSIAVHP--------TKPYVLSGSDDLTVKLWNWENNWA-------LEQTF-EGHEHFVMCVAFNPKD 152 (304)
T ss_dssp ------CCSSCEEEEEECS--------SSSEEEEEETTSCEEEEEGGGTTE-------EEEEE-CCCCSCEEEEEECTTC
T ss_pred ------CCCCcEEEEEEcC--------CCCEEEEECCCCeEEEEECCCCcc-------hhhhh-cccCCcEEEEEECCCC
Confidence 5668899999765 567899999999999999875421 12222 24567899999999 5
Q ss_pred CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 253 (326)
+.+|++|+.|++|++||+++......+.... ...+..+.|.|..++.+|++++.|++|++||++++ +++..
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~ 223 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVAT 223 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEEECCC--------TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-EEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceeccCC--------cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-cccee
Confidence 7899999999999999998877665544322 23578889988767779999999999999999987 67889
Q ss_pred EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC--EEEEeccCccC
Q 020454 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP--IIASCGFLEAA 325 (326)
Q Consensus 254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~s~s~D~~~ 325 (326)
+..|...|.+++|+|++++|++|+.||.|++||+++++++..+..| ...+.+++|+|++. ++++|+.||.+
T Consensus 224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~asg~~~g~~ 296 (304)
T 2ynn_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNGFT 296 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS-SSSEEEEEECTTCGGGCEEEEETTEEE
T ss_pred eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC-CccEEEEEECCCCCceEEEEecCCceE
Confidence 9999999999999999999999999999999999999999999988 89999999999875 68999888753
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.7e-41 Score=287.56 Aligned_cols=266 Identities=11% Similarity=0.123 Sum_probs=224.8
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++|+.||.|+|||+.++ +....+.. +...+.+++|. +.+++|++|+.||+|++||+.+++.+..+.
T Consensus 121 ~~l~s~s~Dg~i~vwd~~~~-----~~~~~l~~--h~~~V~~v~~~--~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~-- 189 (410)
T 1vyh_C 121 SVMVSASEDATIKVWDYETG-----DFERTLKG--HTDSVQDISFD--HSGKLLASCSADMTIKLWDFQGFECIRTMH-- 189 (410)
T ss_dssp SEEEEEESSSCEEEEETTTC-----CCCEEECC--CSSCEEEEEEC--TTSSEEEEEETTSCCCEEETTSSCEEECCC--
T ss_pred CEEEEEeCCCeEEEEECCCC-----cEEEEEec--cCCcEEEEEEc--CCCCEEEEEeCCCeEEEEeCCCCceeEEEc--
Confidence 46899999999999999877 34444443 33445556654 456699999999999999998877766554
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.|...|.++.+.+ ++..+++++.|+.|++||+.... .++.+. .+...|.++.++|++
T Consensus 190 ------~h~~~V~~v~~~p--------~~~~l~s~s~D~~i~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 190 ------GHDHNVSSVSIMP--------NGDHIVSASRDKTIKMWEVQTGY--------CVKTFT-GHREWVRMVRPNQDG 246 (410)
T ss_dssp ------CCSSCEEEEEECS--------SSSEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECTTS
T ss_pred ------CCCCCEEEEEEeC--------CCCEEEEEeCCCeEEEEECCCCc--------EEEEEe-CCCccEEEEEECCCC
Confidence 5667899998766 56789999999999999987543 344454 356789999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC------------------CCcEEEEEeCC
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID------------------DHRKFVAGTND 236 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~------------------~~~~l~~~~~d 236 (326)
++|++|+.|+.|++||+++++....+..|. ..|.+++|+|.. ++.+|++++.|
T Consensus 247 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D 317 (410)
T 1vyh_C 247 TLIASCSNDQTVRVWVVATKECKAELREHR---------HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 317 (410)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCCCceeeEecCCC---------ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC
Confidence 999999999999999999988877776654 568899998842 15689999999
Q ss_pred CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEE
Q 020454 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII 316 (326)
Q Consensus 237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 316 (326)
+.|++||++++ .++..+..|...|++++|+|++++|++|+.||.|++||+++++++..+.+| ...|++++|+|++++|
T Consensus 318 ~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l 395 (410)
T 1vyh_C 318 KTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-EHFVTSLDFHKTAPYV 395 (410)
T ss_dssp SEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-SSCEEEEEECSSSSCE
T ss_pred CeEEEEECCCC-ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC-CCcEEEEEEcCCCCEE
Confidence 99999999987 678889899999999999999999999999999999999999999999998 9999999999999999
Q ss_pred EEeccCccC
Q 020454 317 ASCGFLEAA 325 (326)
Q Consensus 317 ~s~s~D~~~ 325 (326)
++||.||.+
T Consensus 396 ~sgs~D~~i 404 (410)
T 1vyh_C 396 VTGSVDQTV 404 (410)
T ss_dssp EEEETTSEE
T ss_pred EEEeCCCcE
Confidence 999999975
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.2e-39 Score=269.00 Aligned_cols=266 Identities=12% Similarity=0.157 Sum_probs=213.0
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee-eeecc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-VAISN 93 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~-~~~~~ 93 (326)
-.+++++.||.|++||+.++ +....+.. +...+.++.+ ++.+++|++|+.|+.|++|++.+++.. .....
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~~-----~~~~~~~~--~~~~v~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~ 138 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYTT-----NKVHAIPL--RSSWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138 (340)
T ss_dssp SEEEEEETTTEEEEEETTTC-----CEEEEEEC--SSSCEEEEEE--CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCC-----CcceEeec--CCccEEEEEE--CCCCCEEEEEeCCCeEEEEECccCCCcceeEEE
Confidence 46899999999999998876 33334433 3334445555 445679999999999999999765321 11111
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (326)
+ ..|.+.+.++.+.+ ++.+++++.|+.|++||+.... .+..+. .+...|.+++|+|+
T Consensus 139 ~-----~~h~~~v~~~~~~~---------~~~l~s~s~d~~i~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~ 195 (340)
T 1got_B 139 L-----AGHTGYLSCCRFLD---------DNQIVTSSGDTTCALWDIETGQ--------QTTTFT-GHTGDVMSLSLAPD 195 (340)
T ss_dssp E-----ECCSSCEEEEEEEE---------TTEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECTT
T ss_pred e-----cCCCccEEEEEECC---------CCcEEEEECCCcEEEEECCCCc--------EEEEEc-CCCCceEEEEECCC
Confidence 1 15567888777643 4579999999999999987543 333333 35678999999999
Q ss_pred CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 253 (326)
+++|++|+.|+.|++||+++++.+..+..|. ..|++++|+| ++++|++++.|++|++||++.. +.+..
T Consensus 196 ~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~---------~~v~~v~~~p--~~~~l~s~s~d~~v~iwd~~~~-~~~~~ 263 (340)
T 1got_B 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHE---------SDINAICFFP--NGNAFATGSDDATCRLFDLRAD-QELMT 263 (340)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCCS---------SCEEEEEECT--TSSEEEEEETTSCEEEEETTTT-EEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEEcCCc---------CCEEEEEEcC--CCCEEEEEcCCCcEEEEECCCC-cEEEE
Confidence 9999999999999999999998887776654 5689999998 5669999999999999999976 44555
Q ss_pred Eeec--CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 254 FDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 254 ~~~~--~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+..+ ...|++++|+|++++|++|+.||.|++||+.+++.+..+.+| .++|.+++|+|++.+|+|||.||.+
T Consensus 264 ~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCE
T ss_pred EccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC-CCcEEEEEEcCCCCEEEEEcCCccE
Confidence 5432 347999999999999999999999999999999999999998 9999999999999999999999975
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=272.27 Aligned_cols=238 Identities=13% Similarity=0.109 Sum_probs=192.0
Q ss_pred eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (326)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~ 132 (326)
.+.++.|..+ ..|++|+.||+|+|||+.+++.+...... ...|.+.|.++++.+ ++..|++++.|
T Consensus 84 ~v~~~~~s~d---~~l~~~s~dg~v~lWd~~~~~~~~~~~~~----~~~H~~~V~~v~~sp--------dg~~l~sgs~d 148 (344)
T 4gqb_B 84 GVADLTWVGE---RGILVASDSGAVELWELDENETLIVSKFC----KYEHDDIVSTVSVLS--------SGTQAVSGSKD 148 (344)
T ss_dssp CEEEEEEETT---TEEEEEETTSEEEEEEECTTSSCEEEEEE----EECCSSCEEEEEECT--------TSSEEEEEETT
T ss_pred CEEEEEEeCC---CeEEEEECCCEEEEEeccCCCceeEeecc----ccCCCCCEEEEEECC--------CCCEEEEEeCC
Confidence 4556666543 36999999999999999888765443321 015678999999866 66799999999
Q ss_pred CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (326)
|.|++||++... .++.+. .+...|.+++|++++ .+|++|+.|++|++||+++++....+....
T Consensus 149 ~~i~iwd~~~~~--------~~~~~~-~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------- 212 (344)
T 4gqb_B 149 ICIKVWDLAQQV--------VLSSYR-AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA------- 212 (344)
T ss_dssp SCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----------
T ss_pred CeEEEEECCCCc--------EEEEEc-CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce-------
Confidence 999999987543 344443 457899999999987 588999999999999999988777654322
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCC
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~ 290 (326)
+...+++++|+|. ++++|++|+.||+|++||++++ +++.++..|...|++++|+|++ ++|++|+.|++|+|||++++
T Consensus 213 ~~~~~~~~~~~p~-~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 213 PGYLPTSLAWHPQ-QSEVFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp -CCCEEEEEECSS-CTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred eeccceeeeecCC-CCcceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 1235889999985 4568999999999999999987 6789999999999999999997 57899999999999999998
Q ss_pred eEEEEEcceecceEEEEEECCCCC-EEEEeccCccC
Q 020454 291 KLLGCFIGKCSGSIRSIARHPTLP-IIASCGFLEAA 325 (326)
Q Consensus 291 ~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~s~D~~~ 325 (326)
+++ .+.+| .+.|++++|+|+++ +|+|||.||.+
T Consensus 291 ~~~-~~~~H-~~~V~~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 291 ELF-RSQAH-RDFVRDATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp EEE-EECCC-SSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred cEE-EEcCC-CCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence 765 57888 99999999999886 67799999975
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=9.7e-38 Score=263.42 Aligned_cols=264 Identities=14% Similarity=0.184 Sum_probs=211.4
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce------e
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL------R 88 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~------~ 88 (326)
-+|++|+.||.|+|||..++ +....+..+.. .+.++.+ ++.+.+|++|+.|+.+++|++..... .
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~-----~~~~~~~~~~~--~v~~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~ 147 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTT-----NKEHAVTMPCT--WVMACAY--APSGCAIACGGLDNKCSVYPLTFDKNENMAAKK 147 (354)
T ss_dssp SEEEEEETTSEEEEEETTTC-----CEEEEEECSSS--CCCEEEE--CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGC
T ss_pred CEEEEEeCCCeEEEEECCCC-----CcceEEecCCC--CEEEEEE--CCCCCEEEEeeCCCCEEEEEEeccccccccccc
Confidence 67999999999999998766 33333333333 3334444 45567999999999999999864321 1
Q ss_pred eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 168 (326)
..+. .|.+.|.++.+.+ ++..+++++.|+.|++||++... .+..+. .+...|.++
T Consensus 148 ~~~~--------~h~~~v~~~~~~~--------~~~~l~t~s~D~~v~lwd~~~~~--------~~~~~~-~h~~~v~~~ 202 (354)
T 2pbi_B 148 KSVA--------MHTNYLSACSFTN--------SDMQILTASGDGTCALWDVESGQ--------LLQSFH-GHGADVLCL 202 (354)
T ss_dssp EEEE--------ECSSCEEEEEECS--------SSSEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEE
T ss_pred eeee--------ccCCcEEEEEEeC--------CCCEEEEEeCCCcEEEEeCCCCe--------EEEEEc-CCCCCeEEE
Confidence 1111 4567888888765 56789999999999999987543 344444 346789999
Q ss_pred EEcCC--CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454 169 KVDIS--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (326)
Q Consensus 169 ~~~~~--~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~ 246 (326)
+++|+ +++|++|+.|+.|++||+++++.+..+..|. ..|++++|+| ++.+|++++.|++|++||++.
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~---------~~v~~v~~~p--~~~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE---------SDVNSVRYYP--SGDAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEECT--TSSEEEEEETTSCEEEEETTT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---------CCeEEEEEeC--CCCEEEEEeCCCeEEEEECCC
Confidence 99874 6899999999999999999998888776654 5689999998 456999999999999999997
Q ss_pred CCCceeEEeec--CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 247 QRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 247 ~~~~~~~~~~~--~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
. +.+..+..+ ...+++++|+|++++|++|+.|+.|++||+.+++.+..+.+| .+.|++++|+|++++|++||.||.
T Consensus 272 ~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h-~~~v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 272 D-REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH-ENRVSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp T-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC-SSCEEEEEECTTSSCEEEEETTSE
T ss_pred C-cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC-CCcEEEEEECCCCCEEEEEcCCCC
Confidence 6 444444433 347899999999999999999999999999999999999998 999999999999999999999997
Q ss_pred C
Q 020454 325 A 325 (326)
Q Consensus 325 ~ 325 (326)
+
T Consensus 350 v 350 (354)
T 2pbi_B 350 L 350 (354)
T ss_dssp E
T ss_pred E
Confidence 5
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.3e-38 Score=265.84 Aligned_cols=273 Identities=14% Similarity=0.109 Sum_probs=203.9
Q ss_pred eeeeeecC------cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee
Q 020454 15 LRALTFDS------LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (326)
Q Consensus 15 ~~l~~~~~------~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~ 88 (326)
-+|++++. ||.|++|+...+. ....+.... ..+...+.+++|.++. .+++++.||+|+|||+.+++..
T Consensus 55 ~~las~s~d~~~~wd~~v~~~~~~~~~-~~~~~~~~~--~~~~~~V~~~~~s~d~---~~l~~s~dg~v~lWd~~~~~~~ 128 (357)
T 4g56_B 55 ALLLAASSLSSRTWGGSIWVFKDPEGA-PNESLCTAG--VQTEAGVTDVAWVSEK---GILVASDSGAVELWEILEKESL 128 (357)
T ss_dssp CEEEEEECSSSSSCCEEEEEESSCC----CGGGCSEE--EECSSCEEEEEEETTT---EEEEEETTSCEEEC--------
T ss_pred CEEEEEcCCCCccccCeEEEEECCCCC-cceeEeccc--CCCCCCEEEEEEcCCC---CEEEEECCCEEEEeecccccee
Confidence 45777776 7889999877651 111121111 1233446667776442 4778899999999999877653
Q ss_pred eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 168 (326)
...... ...|.+.|.++.+.+ ++..|++++.||.|++||++... .+..+. .+...|.++
T Consensus 129 ~~~~~~----~~~h~~~V~~v~~sp--------dg~~l~sgs~dg~v~iwd~~~~~--------~~~~~~-~h~~~v~~v 187 (357)
T 4g56_B 129 LVNKFA----KYEHDDIVKTLSVFS--------DGTQAVSGGKDFSVKVWDLSQKA--------VLKSYN-AHSSEVNCV 187 (357)
T ss_dssp CCCCEE----ECCCSSCEEEEEECS--------SSSEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEE
T ss_pred EEEeec----cCCCCCCEEEEEECC--------CCCEEEEEeCCCeEEEEECCCCc--------EEEEEc-CCCCCEEEE
Confidence 322210 025668899999866 66789999999999999987543 344443 356789999
Q ss_pred EEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454 169 KVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (326)
Q Consensus 169 ~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~ 247 (326)
+|++++ .++++++.|+.|++||++++++........ +...+++++|+|. ++.+|++++.|+.|++||+++.
T Consensus 188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~-------~~~~v~~v~~sp~-~~~~la~g~~d~~i~~wd~~~~ 259 (357)
T 4g56_B 188 AACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA-------SDTIPTSVTWHPE-KDDTFACGDETGNVSLVNIKNP 259 (357)
T ss_dssp EECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT-------CCSCEEEEEECTT-STTEEEEEESSSCEEEEESSCG
T ss_pred EEccCCCceeeeeccCCceEEEECCCCceeeeeeecc-------ccccccchhhhhc-ccceEEEeecccceeEEECCCC
Confidence 999987 588999999999999999887765543322 2356889999985 4558999999999999999987
Q ss_pred CCceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECC-CCCEEEEeccCccC
Q 020454 248 RRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGFLEAA 325 (326)
Q Consensus 248 ~~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~s~s~D~~~ 325 (326)
+++..+..|...|++++|+|++ ++|++|+.||+|+|||+++++++..+ +| .+.|++|+|+| ++.+|+|||.||.+
T Consensus 260 -~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H-~~~V~~vafsP~d~~~l~s~s~Dg~v 336 (357)
T 4g56_B 260 -DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH-RDFVTGVAWSPLDHSKFTTVGWDHKV 336 (357)
T ss_dssp -GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC-SSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred -cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC-CCCEEEEEEeCCCCCEEEEEcCCCeE
Confidence 6788899999999999999987 67899999999999999999887654 67 99999999999 78999999999975
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-37 Score=264.53 Aligned_cols=272 Identities=13% Similarity=0.147 Sum_probs=207.6
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeee-ecc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA-ISN 93 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~-~~~ 93 (326)
-.|++|+.||.|+|||+.++ +....+..+... +..+.| ++++++|++|+.|+.|++|++.+...... ...
T Consensus 79 ~~l~s~s~D~~v~iWd~~~~-----~~~~~~~~h~~~--v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~ 149 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWNALTS-----QKTHAIKLHCPW--VMECAF--APNGQSVACGGLDSACSIFNLSSQADRDGNMPV 149 (380)
T ss_dssp SCEEEEETTSEEEEEETTTT-----EEEEEEECCCTT--CCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTT
T ss_pred CEEEEEeCCCeEEEEECCCC-----ccceEEecCCCC--EEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccCCccc
Confidence 56999999999999999876 444444433333 333333 45677999999999999999864321110 000
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE----ccCCCceEEEE
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN----VCASGTIAFSK 169 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~ 169 (326)
......|.+.+.++.+.+. .+..+++++.|+.|++||+.... .+..+. ..+...|.++.
T Consensus 150 --~~~~~gh~~~v~~~~~~~~-------~~~~l~s~s~D~~i~~wd~~~~~--------~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 150 --SRVLTGHKGYASSCQYVPD-------QETRLITGSGDQTCVLWDVTTGQ--------RISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp --CCBCCCCSSCCCCCBCCSS-------SSSCEEEECTTSCEEEECTTTCC--------EEEEECCCSSSSCCSCEEEEE
T ss_pred --eeeccCCCcceEEEEEecC-------CCCEEEEECCCCcEEEEEcCCCc--------EEEEeecccCCCCccCeEEEE
Confidence 0001256677877776552 24579999999999999987644 333332 23466899999
Q ss_pred EcC-CCCEEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454 170 VDI-SEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (326)
Q Consensus 170 ~~~-~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~ 247 (326)
+++ ++++|++|+.|+.|++||++. .+.+..+..|. ..|++++|+| ++++|++++.|++|++||++++
T Consensus 213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~---------~~v~~v~~~p--~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE---------GDINSVKFFP--DGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS---------SCCCEEEECT--TSSEEEEECSSSCEEEEETTTT
T ss_pred eecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC---------CCeEEEEEec--CCCeEEEEcCCCeEEEEECCCC
Confidence 987 789999999999999999984 45566665554 5688999998 5669999999999999999987
Q ss_pred CCceeEEeecC-------CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE----cceecceEEEEEECCCCCEE
Q 020454 248 RRPVMSFDFRE-------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF----IGKCSGSIRSIARHPTLPII 316 (326)
Q Consensus 248 ~~~~~~~~~~~-------~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~----~~~~~~~v~~l~~~p~~~~l 316 (326)
.++..+..+. ..|++++|+|+|++|++|+.||.|++||+.+++.+..+ .+| .+.|++++|+|++.+|
T Consensus 282 -~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l 359 (380)
T 3iz6_a 282 -HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH-EGRISCLGLSSDGSAL 359 (380)
T ss_dssp -EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC-CCCCCEEEECSSSSEE
T ss_pred -cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC-CCceEEEEECCCCCEE
Confidence 4555554432 24899999999999999999999999999999988877 577 9999999999999999
Q ss_pred EEeccCccC
Q 020454 317 ASCGFLEAA 325 (326)
Q Consensus 317 ~s~s~D~~~ 325 (326)
+|||.||.+
T Consensus 360 ~sgs~D~~i 368 (380)
T 3iz6_a 360 CTGSWDKNL 368 (380)
T ss_dssp EEECTTSCE
T ss_pred EEeeCCCCE
Confidence 999999975
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-36 Score=250.73 Aligned_cols=236 Identities=16% Similarity=0.195 Sum_probs=195.1
Q ss_pred CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (326)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~ 130 (326)
...+.++.|. +.+++|++|+.||+|++||+.+++.+..+. .+..++.++.+.+ +++.+++++
T Consensus 13 ~~~V~~~~fs--p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~--------~~~~~v~~~~~~~--------~~~~l~s~s 74 (304)
T 2ynn_A 13 SDRVKGIDFH--PTEPWVLTTLYSGRVELWNYETQVEVRSIQ--------VTETPVRAGKFIA--------RKNWIIVGS 74 (304)
T ss_dssp CSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTTEEEEEEE--------CCSSCEEEEEEEG--------GGTEEEEEE
T ss_pred CCceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCceeEEee--------ccCCcEEEEEEeC--------CCCEEEEEC
Confidence 3345555554 456699999999999999999888776665 4557888888766 567899999
Q ss_pred cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCC
Q 020454 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLG 209 (326)
Q Consensus 131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~ 209 (326)
.|+.|++|++.... .+..+. .+...|.+++|+|++++|++|+.|++|++||++++. ....+..|.
T Consensus 75 ~d~~i~vwd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~----- 140 (304)
T 2ynn_A 75 DDFRIRVFNYNTGE--------KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE----- 140 (304)
T ss_dssp TTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCC-----
T ss_pred CCCEEEEEECCCCc--------EEEEEe-CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccC-----
Confidence 99999999987543 344444 356789999999999999999999999999998774 344455543
Q ss_pred cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE-eecCCceEEEEecC--CCCeEEEEcCCCcEEEEE
Q 020454 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEP--DSFNIYIGNGSGDLASVD 286 (326)
Q Consensus 210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~i~~v~~s~--~~~~l~~g~~dg~v~iwd 286 (326)
..|.+++|+|. ++.+|++++.|++|++||++... +...+ ..+...+..++|+| ++.+|++|+.|+.|++||
T Consensus 141 ----~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd 214 (304)
T 2ynn_A 141 ----HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQST-PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214 (304)
T ss_dssp ----SCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSS-CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEE
T ss_pred ----CcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCC-ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEe
Confidence 56899999985 45699999999999999998763 34444 35667899999987 678999999999999999
Q ss_pred CCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 287 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++++++..+.+| ...|.+++|+|++++|++||.||.+
T Consensus 215 ~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~Dg~i 252 (304)
T 2ynn_A 215 YQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDGTL 252 (304)
T ss_dssp TTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCE
T ss_pred CCCCccceeeCCC-CCCEEEEEECCCCCEEEEEcCCCeE
Confidence 9999999999998 9999999999999999999999976
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=252.15 Aligned_cols=241 Identities=14% Similarity=0.214 Sum_probs=199.9
Q ss_pred CCCceEEEEEeeeC--CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE
Q 020454 49 HSSNCVLAASIDDS--QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (326)
Q Consensus 49 ~~~~~~~~~~~~~~--~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l 126 (326)
.+...+.+++|... .++.+|++|+.|++|+||++..++....... ..|...|.++.+.+ +...+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l------~gh~~~v~~~~~~~--------~~~~l 95 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL------EGHQLGVVSVDISH--------TLPIA 95 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE------CCCSSCEEEEEECS--------SSSEE
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee------ccCCCCEEEEEECC--------CCCEE
Confidence 45556666666543 3466899999999999999976654333222 26678899888755 55789
Q ss_pred EEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCC
Q 020454 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (326)
Q Consensus 127 ~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~ 206 (326)
++++.|+.|++||+.... .++.+.. +...+.+++|+|++++|++|+.|+.|++||+++++....+..+.
T Consensus 96 ~s~s~D~~i~lWd~~~~~--------~~~~~~~-~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~-- 164 (321)
T 3ow8_A 96 ASSSLDAHIRLWDLENGK--------QIKSIDA-GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG-- 164 (321)
T ss_dssp EEEETTSEEEEEETTTTE--------EEEEEEC-CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS--
T ss_pred EEEeCCCcEEEEECCCCC--------EEEEEeC-CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC--
Confidence 999999999999987543 3444442 35678899999999999999999999999999988877766543
Q ss_pred CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (326)
Q Consensus 207 ~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd 286 (326)
..|.+++|+| ++++|++++.|+.|++||++++ +.+..+..|..+|++++|+|++++|++|+.||.|++||
T Consensus 165 -------~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd 234 (321)
T 3ow8_A 165 -------KFILSIAYSP--DGKYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234 (321)
T ss_dssp -------SCEEEEEECT--TSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred -------ceEEEEEECC--CCCEEEEEcCCCeEEEEECCCC-cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 4588999998 5679999999999999999987 67888989999999999999999999999999999999
Q ss_pred CCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 287 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++++.+..+.+| ...|.+++|+|++++|++++.|+.+
T Consensus 235 ~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~D~~v 272 (321)
T 3ow8_A 235 VQHANLAGTLSGH-ASWVLNVAFCPDDTHFVSSSSDKSV 272 (321)
T ss_dssp TTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCcceeEEEcCC-CCceEEEEECCCCCEEEEEeCCCcE
Confidence 9999999999998 9999999999999999999999975
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5e-36 Score=249.41 Aligned_cols=267 Identities=9% Similarity=0.092 Sum_probs=210.3
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..|++|+.||.|++|++.............+.. +...+.++.+. +.+++|++|+.||+|++||+.+++.+..+.
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s--~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~-- 104 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--HSHIVQDCTLT--ADGAYALSASWDKTLRLWDVATGETYQRFV-- 104 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC--CSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEE--
T ss_pred cEEEEecCCccEEEecCCCCCccccccceEEeC--CcccEEEEEEC--CCCCEEEEEeCCCEEEEEECCCCCeeEEEc--
Confidence 579999999999999997541111122233433 33444455553 456699999999999999999988777665
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC-
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 173 (326)
.|...|.++.+.+ +...+++++.|+.|++|+++.. .+..+ ..+...|.++.++|.
T Consensus 105 ------~h~~~v~~~~~~~--------~~~~l~s~s~D~~i~vwd~~~~---------~~~~~-~~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 105 ------GHKSDVMSVDIDK--------KASMIISGSRDKTIKVWTIKGQ---------CLATL-LGHNDWVSQVRVVPNE 160 (319)
T ss_dssp ------CCSSCEEEEEECT--------TSCEEEEEETTSCEEEEETTSC---------EEEEE-CCCSSCEEEEEECCC-
T ss_pred ------cCCCcEEEEEEcC--------CCCEEEEEeCCCeEEEEECCCC---------eEEEE-eccCCcEEEEEEccCC
Confidence 5668899888755 5678999999999999997532 22222 245678999999985
Q ss_pred -----CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC
Q 020454 174 -----EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (326)
Q Consensus 174 -----~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~ 248 (326)
+.+|++++.|+.|++||+++.+....+..|. ..|.+++|+| ++++|++++.||+|++||+++.
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~---------~~v~~~~~sp--~g~~l~s~~~dg~i~iwd~~~~- 228 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN---------SNINTLTASP--DGTLIASAGKDGEIMLWNLAAK- 228 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTEEEEEECCCC---------SCEEEEEECT--TSSEEEEEETTCEEEEEETTTT-
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC---------CcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCC-
Confidence 4589999999999999999988877776654 5689999998 5679999999999999999976
Q ss_pred CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce-------ecceEEEEEECCCCCEEEEecc
Q 020454 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------CSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 249 ~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-------~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
+++..+..+ ..|.+++|+|++.+|++++.+ .+++|++.....+..+..+ +...+.+++|+|++++|++|+.
T Consensus 229 ~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~ 306 (319)
T 3frx_A 229 KAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306 (319)
T ss_dssp EEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred cEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence 566777654 689999999999999988765 5999999988777766422 1567999999999999999999
Q ss_pred CccC
Q 020454 322 LEAA 325 (326)
Q Consensus 322 D~~~ 325 (326)
||.+
T Consensus 307 Dg~i 310 (319)
T 3frx_A 307 DNVI 310 (319)
T ss_dssp TSCE
T ss_pred CceE
Confidence 9976
No 12
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.5e-36 Score=256.34 Aligned_cols=272 Identities=17% Similarity=0.181 Sum_probs=209.9
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCC----------------CCceEEEEEeeeCCCCCeEEEEecCCcEEE
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH----------------SSNCVLAASIDDSQNDPLLAVARKNGLTDI 79 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i 79 (326)
++++.+.++.+++|++..+ +....+..+. ....+.+++| ++++++|++|+.||.|++
T Consensus 77 ~~la~g~~~~v~i~~~~~g-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~i 149 (393)
T 1erj_A 77 EYLATGCNKTTQVYRVSDG-----SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRI 149 (393)
T ss_dssp SEEEEECBSCEEEEETTTC-----CEEEEECC-----------------CCCCBEEEEEE--CTTSSEEEEEETTSCEEE
T ss_pred CEEEEEcCCcEEEEEecCC-----CEEEEecCccccccccccccccccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEE
Confidence 3444445789999999876 3333332211 1112444555 456779999999999999
Q ss_pred EeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc
Q 020454 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV 159 (326)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~ 159 (326)
||+.+++.+..+. .|...|.++.+.+ ++..+++++.|+.|++||+.... ....+.
T Consensus 150 wd~~~~~~~~~~~--------~h~~~v~~~~~~p--------~~~~l~s~s~d~~v~iwd~~~~~--------~~~~~~- 204 (393)
T 1erj_A 150 WDIENRKIVMILQ--------GHEQDIYSLDYFP--------SGDKLVSGSGDRTVRIWDLRTGQ--------CSLTLS- 204 (393)
T ss_dssp EETTTTEEEEEEC--------CCSSCEEEEEECT--------TSSEEEEEETTSEEEEEETTTTE--------EEEEEE-
T ss_pred EECCCCcEEEEEc--------cCCCCEEEEEEcC--------CCCEEEEecCCCcEEEEECCCCe--------eEEEEE-
Confidence 9999888766655 5668899999866 56789999999999999986533 222333
Q ss_pred cCCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCe
Q 020454 160 CASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (326)
Q Consensus 160 ~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~ 238 (326)
....+.+++++| ++++|++|+.|+.|++||+++++.+..+...... ...+...|++++|+| ++++|++++.|++
T Consensus 205 -~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~--~~~h~~~v~~v~~~~--~g~~l~s~s~d~~ 279 (393)
T 1erj_A 205 -IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES--GTGHKDSVYSVVFTR--DGQSVVSGSLDRS 279 (393)
T ss_dssp -CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEECT--TSSEEEEEETTSE
T ss_pred -cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccC--CCCCCCCEEEEEECC--CCCEEEEEeCCCE
Confidence 356799999999 8899999999999999999998876665322110 012446799999998 5679999999999
Q ss_pred EEEEeCCCCC-----------CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEE
Q 020454 239 VRLYDTSAQR-----------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI 307 (326)
Q Consensus 239 v~iwd~~~~~-----------~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 307 (326)
|++||++... .....+..|...|.+++|+|++.+|++|+.||.|++||+++++++..+.+| .+.|.++
T Consensus 280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h-~~~v~~v 358 (393)
T 1erj_A 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-RNSVISV 358 (393)
T ss_dssp EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEE
T ss_pred EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC-CCCEEEE
Confidence 9999987531 234566788899999999999999999999999999999999999999998 9999999
Q ss_pred EECC------CCCEEEEeccCccC
Q 020454 308 ARHP------TLPIIASCGFLEAA 325 (326)
Q Consensus 308 ~~~p------~~~~l~s~s~D~~~ 325 (326)
+|+| ++++|+|||.||.+
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i 382 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKA 382 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcE
Confidence 9986 67899999999976
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-36 Score=274.68 Aligned_cols=289 Identities=12% Similarity=0.131 Sum_probs=217.7
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
.++++++.||.|++||.... +....+.. +...+.++.|. +++++|++|+.||+|++||+.+++.+..+...
T Consensus 161 ~~l~s~s~D~~v~lwd~~~~-----~~~~~l~~--H~~~V~~v~fs--pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~ 231 (611)
T 1nr0_A 161 FRIISGSDDNTVAIFEGPPF-----KFKSTFGE--HTKFVHSVRYN--PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 231 (611)
T ss_dssp CEEEEEETTSCEEEEETTTB-----EEEEEECC--CSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred eEEEEEeCCCeEEEEECCCC-----eEeeeecc--ccCceEEEEEC--CCCCEEEEEECCCcEEEEECCCCcEeeeeccc
Confidence 57999999999999998765 45445544 34445555554 45669999999999999999888876655310
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc------------------------ccccc
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------------SAESS 150 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~------------------------~~~~~ 150 (326)
. .....|.+.|.++.+.+ ++..|++++.|+.|++||+..... ++...
T Consensus 232 ~-~~~~~h~~~V~~v~~sp--------dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 232 S-LKNVAHSGSVFGLTWSP--------DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp T-SSSCSSSSCEEEEEECT--------TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred c-ccccccCCCEEEEEECC--------CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 0 00114668899999766 667899999999999999875321 22345
Q ss_pred cceEEEEEcc----------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee-cCCCCC-------------
Q 020454 151 CSTVKSWNVC----------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-KPPPKN------------- 206 (326)
Q Consensus 151 ~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~~~~~------------- 206 (326)
++.+++|+.. +...|.+++|+|++++|++++.|++|++||+.+++..... ..|...
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~ 382 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 382 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE
T ss_pred CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEE
Confidence 6677788753 4457999999999999999999999999999876543322 111000
Q ss_pred -----------------C------------------------------------------CCcCCCCceeeeEEeecCCC
Q 020454 207 -----------------S------------------------------------------LGIFTPTWFTSAAFLSIDDH 227 (326)
Q Consensus 207 -----------------~------------------------------------------~~~~~~~~v~~~~~~p~~~~ 227 (326)
. ..+.+...+.+++|+| ++
T Consensus 383 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp--dg 460 (611)
T 1nr0_A 383 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN--DK 460 (611)
T ss_dssp EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT--TS
T ss_pred EEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC--CC
Confidence 0 0001123467889988 67
Q ss_pred cEEEEEeCCCeEEEEeCCCCCC-ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC-CeEEEE--Ecceecce
Q 020454 228 RKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGC--FIGKCSGS 303 (326)
Q Consensus 228 ~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~-~~~~~~--~~~~~~~~ 303 (326)
++|++++.|++|++||+..... .+.. ..|...|++++|+|+|++|++++.|+.|++||+.+ ++++.. +.+| ...
T Consensus 461 ~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H-~~~ 538 (611)
T 1nr0_A 461 QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TAK 538 (611)
T ss_dssp CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-SSC
T ss_pred CEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec-ccc
Confidence 7999999999999999986421 1233 57889999999999999999999999999999987 666543 3347 999
Q ss_pred EEEEEECCCCCEEEEeccCccC
Q 020454 304 IRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 304 v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
|++++|+|++++|+++|.|+.+
T Consensus 539 V~~v~fspdg~~lasgs~D~~v 560 (611)
T 1nr0_A 539 VACVSWSPDNVRLATGSLDNSV 560 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCE
T ss_pred eeEEEECCCCCEEEEEECCCcE
Confidence 9999999999999999999975
No 14
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.3e-35 Score=244.73 Aligned_cols=265 Identities=14% Similarity=0.120 Sum_probs=211.8
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++++.||.|++|+...+ +....+.. +...+..+.|. +++++|++|+.||.|++||+.+++.+..+.
T Consensus 36 ~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~--h~~~v~~~~~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-- 104 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYDG-----KFEKTISG--HKLGISDVAWS--SDSNLLVSASDDKTLKIWDVSSGKCLKTLK-- 104 (312)
T ss_dssp SEEEEEETTSCEEEEETTTC-----CEEEEECC--CSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred CEEEEeeCCCeEEEEeCCCc-----ccchhhcc--CCCceEEEEEc--CCCCEEEEECCCCEEEEEECCCCcEEEEEc--
Confidence 46899999999999999876 44444443 33445555554 456799999999999999999888777665
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.+...|.++.+.+ ++..+++++.||.|++||+.... .+..+. .+...|.++.|+|++
T Consensus 105 ------~~~~~v~~~~~~~--------~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~ 161 (312)
T 4ery_A 105 ------GHSNYVFCCNFNP--------QSNLIVSGSFDESVRIWDVKTGK--------CLKTLP-AHSDPVSAVHFNRDG 161 (312)
T ss_dssp ------CCSSCEEEEEECS--------SSSEEEEEETTSCEEEEETTTCC--------EEEEEC-CCSSCEEEEEECTTS
T ss_pred ------CCCCCEEEEEEcC--------CCCEEEEEeCCCcEEEEECCCCE--------EEEEec-CCCCcEEEEEEcCCC
Confidence 4557888888755 56789999999999999987543 333333 346789999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
++|++++.|+.|++||+++++.+..+.... ...+..++|+| ++++|++++.|+.|++||+++. +.+..+
T Consensus 162 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~-~~~~~~ 230 (312)
T 4ery_A 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDD--------NPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKG-KCLKTY 230 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCSS--------CCCEEEEEECT--TSSEEEEEETTTEEEEEETTTT-EEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCceeeEEeccC--------CCceEEEEECC--CCCEEEEEcCCCeEEEEECCCC-cEEEEE
Confidence 999999999999999999888766653321 24578899998 5669999999999999999977 567777
Q ss_pred eecCCce---EEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec--cCccC
Q 020454 255 DFRETPI---KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--FLEAA 325 (326)
Q Consensus 255 ~~~~~~i---~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s--~D~~~ 325 (326)
..|.... ......+++.+|++|+.||.|++||+++++++..+.+| ...|.+++|+|++++|++++ .|+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~~~~~d~~i 305 (312)
T 4ery_A 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALENDKTI 305 (312)
T ss_dssp CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC-SSCEEEEEECSSSSEEEEEECTTTCCE
T ss_pred EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc-CCcEEEEeecCcCCceEEEEccCCccE
Confidence 7665543 22233467889999999999999999999999999998 99999999999999999997 57764
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-36 Score=249.06 Aligned_cols=273 Identities=14% Similarity=0.093 Sum_probs=198.2
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc-------cee
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-------DLR 88 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~-------~~~ 88 (326)
.|++|+.||.|++|++..+ .......+....+...+.++.|. +.+++|++|+.|++|+||++... +.+
T Consensus 26 ~las~~~D~~i~lw~~~~~---~~~~~~~~~~~~h~~~v~~v~~s--p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~ 100 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYD---DFTLIDVLDETAHKKAIRSVAWR--PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLL 100 (330)
T ss_dssp EEEEEESSSCEEEEECSSS---CCEEEEEECTTCCCSCEEEEEEC--TTSSEEEEEETTSCEEEEEC-------CCCEEE
T ss_pred EEEEEcCCCEEEEEEecCC---CeEEEEEEecCCccCCEEEEEEC--CCCCEEEEEeCCCcEEEEEcccCcCccccceeE
Confidence 8999999999999999864 11222233222244556666664 45669999999999999998532 122
Q ss_pred eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 168 (326)
..+. .|.+.|.++.+.+ ++.+|++++.|+.|++|++..... ....+..+. .+...|.++
T Consensus 101 ~~~~--------~h~~~V~~v~~sp--------~g~~las~s~D~~v~iwd~~~~~~----~~~~~~~~~-~h~~~v~~v 159 (330)
T 2hes_X 101 AIIE--------GHENEVKGVAWSN--------DGYYLATCSRDKSVWIWETDESGE----EYECISVLQ-EHSQDVKHV 159 (330)
T ss_dssp EEEC------------CEEEEEECT--------TSCEEEEEETTSCEEEEECCTTCC----CCEEEEEEC-CCSSCEEEE
T ss_pred EEEc--------CCCCcEEEEEECC--------CCCEEEEEeCCCEEEEEeccCCCC----CeEEEEEec-cCCCceEEE
Confidence 2222 5668899999765 567899999999999999853210 011233333 356789999
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCc--eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454 169 KVDISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (326)
Q Consensus 169 ~~~~~~~~l~sg~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~ 246 (326)
+|+|++++|++|+.|++|++||+.++ +++..+..|. ..|.+++|+|..++.+|++++.|++|++||++.
T Consensus 160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE---------GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS---------SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCC---------CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 99999999999999999999998765 4566666654 568999999965466899999999999999875
Q ss_pred CCC-------ceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe--EEEEE-cceecc-eEEEEEECC--C
Q 020454 247 QRR-------PVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--LLGCF-IGKCSG-SIRSIARHP--T 312 (326)
Q Consensus 247 ~~~-------~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~--~~~~~-~~~~~~-~v~~l~~~p--~ 312 (326)
... ....+.. |...|.+++|++++ +|++++.||.|++||..+++ .+... .+| .. .|.+++|+| +
T Consensus 231 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h-~~~~v~~v~~~~~~~ 308 (330)
T 2hes_X 231 DDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH-GVYEINVVKWLELNG 308 (330)
T ss_dssp ECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT-TTSCEEEEEEC----
T ss_pred CCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc-ccceEEEEEEecCCC
Confidence 311 1223333 78899999999765 89999999999999998874 34333 566 66 899999999 6
Q ss_pred CCEEEEeccCccC
Q 020454 313 LPIIASCGFLEAA 325 (326)
Q Consensus 313 ~~~l~s~s~D~~~ 325 (326)
+++|++||.||.+
T Consensus 309 ~~~las~s~Dg~v 321 (330)
T 2hes_X 309 KTILATGGDDGIV 321 (330)
T ss_dssp -CCEEEEETTSEE
T ss_pred ceEEEEecCCCcE
Confidence 8899999999975
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=249.55 Aligned_cols=272 Identities=13% Similarity=0.097 Sum_probs=204.3
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceee-eccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVE-RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~ 93 (326)
-.|++|+.||.|+||++.++ .... ......+...+.++.|. +.+++|++|+.|++|++|+...+........
T Consensus 29 ~~las~~~D~~i~iw~~~~~-----~~~~~~~~~~~h~~~v~~~~~s--p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 101 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGD-----SWICKSVLSEGHQRTVRKVAWS--PCGNYLASASFDATTCIWKKNQDDFECVTTL 101 (345)
T ss_dssp SCEEEEETTSCEEEEEEETT-----EEEEEEEECSSCSSCEEEEEEC--TTSSEEEEEETTSCEEEEEECCC-EEEEEEE
T ss_pred CEEEEEcCCCeEEEEEcCCC-----cceeeeeeccccCCcEEEEEEC--CCCCEEEEEECCCcEEEEEccCCCeEEEEEc
Confidence 56899999999999999875 2211 11112344555566654 4567999999999999999876653221111
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (326)
..|...|.++.+.+ ++..|++++.|+.|++|++..... ...+..+. .+...|.+++|+|+
T Consensus 102 ------~~h~~~v~~v~~sp--------~~~~l~s~s~D~~v~iwd~~~~~~-----~~~~~~~~-~h~~~v~~~~~~p~ 161 (345)
T 3fm0_A 102 ------EGHENEVKSVAWAP--------SGNLLATCSRDKSVWVWEVDEEDE-----YECVSVLN-SHTQDVKHVVWHPS 161 (345)
T ss_dssp ------CCCSSCEEEEEECT--------TSSEEEEEETTSCEEEEEECTTSC-----EEEEEEEC-CCCSCEEEEEECSS
T ss_pred ------cCCCCCceEEEEeC--------CCCEEEEEECCCeEEEEECCCCCC-----eEEEEEec-CcCCCeEEEEECCC
Confidence 25668899999766 567999999999999999875331 11233332 45678999999999
Q ss_pred CCEEEEecCCCeEEEEECCCcee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC--
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-- 249 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-- 249 (326)
+++|++|+.|+.|++||+++++. ...+.+|. ..|++++|+| ++++|++++.|++|++||......
T Consensus 162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~---------~~v~~l~~sp--~g~~l~s~s~D~~v~iW~~~~~~~~~ 230 (345)
T 3fm0_A 162 QELLASASYDDTVKLYREEEDDWVCCATLEGHE---------STVWSLAFDP--SGQRLASCSDDRTVRIWRQYLPGNEQ 230 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTEEEEEEEECCCS---------SCEEEEEECT--TSSEEEEEETTSCEEEEEEECTTCTT
T ss_pred CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCC---------CceEEEEECC--CCCEEEEEeCCCeEEEeccccCCCCc
Confidence 99999999999999999987653 34555543 5699999998 567999999999999999643211
Q ss_pred ------------ceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe--------EE-EEEcceecceEEEE
Q 020454 250 ------------PVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--------LL-GCFIGKCSGSIRSI 307 (326)
Q Consensus 250 ------------~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~--------~~-~~~~~~~~~~v~~l 307 (326)
++..+.. |...|.+++|+|++..|++++.|+.|++|+...+. .. ....+| ...|+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v 309 (345)
T 3fm0_A 231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH-SQDVNCV 309 (345)
T ss_dssp CCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS-SSCEEEE
T ss_pred cceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc-cCcEeEe
Confidence 1222333 77899999999999999999999999999987542 11 223477 9999999
Q ss_pred EECCCCC-EEEEeccCccC
Q 020454 308 ARHPTLP-IIASCGFLEAA 325 (326)
Q Consensus 308 ~~~p~~~-~l~s~s~D~~~ 325 (326)
+|+|+++ +|||||.||.+
T Consensus 310 ~~~p~~~~~laS~s~Dg~v 328 (345)
T 3fm0_A 310 AWNPKEPGLLASCSDDGEV 328 (345)
T ss_dssp EECSSSTTEEEEEETTSCE
T ss_pred EEeCCCceEEEEcCCCCcE
Confidence 9999874 99999999976
No 17
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.2e-35 Score=248.10 Aligned_cols=267 Identities=11% Similarity=0.059 Sum_probs=202.1
Q ss_pred eeeeeecCcccEEEEEecCCcCC--CcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454 15 LRALTFDSLGLIKVIEARGEHGG--VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~ 92 (326)
-.|++|+.||.|++|++...... .......+. .+...+.++.+. +.+.+|++|+.||+|++||+.+++.+..+.
T Consensus 40 ~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~~--~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~ 115 (343)
T 2xzm_R 40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--GHNHFVSDLALS--QENCFAISSSWDKTLRLWDLRTGTTYKRFV 115 (343)
T ss_dssp CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--CCSSCEEEEEEC--SSTTEEEEEETTSEEEEEETTSSCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCcCCcccccccccchhc--cCCCceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 57999999999999999764111 011122233 333445555554 456689999999999999999888776665
Q ss_pred ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE--ccCCCceEEEEE
Q 020454 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKV 170 (326)
Q Consensus 93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~ 170 (326)
.|...|.++.+.+ ++..+++++.|+.|++|++.... ..... ..+...|.+++|
T Consensus 116 --------~h~~~v~~v~~sp--------~~~~l~s~~~d~~i~~wd~~~~~---------~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 116 --------GHQSEVYSVAFSP--------DNRQILSAGAEREIKLWNILGEC---------KFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp --------CCCSCEEEEEECS--------STTEEEEEETTSCEEEEESSSCE---------EEECCTTTSCSSCEEEEEE
T ss_pred --------CCCCcEEEEEECC--------CCCEEEEEcCCCEEEEEeccCCc---------eeeeecccCCCceeeeeee
Confidence 5668899999765 56789999999999999976321 11111 134567999999
Q ss_pred cCCC----------CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454 171 DISE----------KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (326)
Q Consensus 171 ~~~~----------~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~ 240 (326)
+|++ .+|++++.|+.|++||. ..+....+..|. ..|++++|+| ++++|++++.|+.|+
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~---------~~v~~~~~s~--~g~~l~sgs~dg~v~ 238 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE---------SNVNHLSISP--NGKYIATGGKDKKLL 238 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS---------SCEEEEEECT--TSSEEEEEETTCEEE
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc---------ccceEEEECC--CCCEEEEEcCCCeEE
Confidence 9986 78999999999999994 445555555543 5689999998 567999999999999
Q ss_pred EEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEE--EEc-----------ceecceEEEE
Q 020454 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG--CFI-----------GKCSGSIRSI 307 (326)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~--~~~-----------~~~~~~v~~l 307 (326)
+||++....+...+. +...|.+++|+|++.++++| .|+.|++||+.+++... .+. +| ...|.++
T Consensus 239 iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~ 315 (343)
T 2xzm_R 239 IWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK-NPQCTSL 315 (343)
T ss_dssp EEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS-CCCEEEE
T ss_pred EEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC-CCceEEE
Confidence 999965534444443 45679999999999887755 57789999998876543 333 55 7889999
Q ss_pred EECCCCCEEEEeccCccC
Q 020454 308 ARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 308 ~~~p~~~~l~s~s~D~~~ 325 (326)
+|+|++++|++|+.||.+
T Consensus 316 ~~sp~g~~l~sg~~Dg~v 333 (343)
T 2xzm_R 316 AWNALGKKLFAGFTDGVI 333 (343)
T ss_dssp EECSSSCCEEEEETTSEE
T ss_pred EECCCCCeEEEecCCceE
Confidence 999999999999999975
No 18
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.5e-36 Score=257.63 Aligned_cols=235 Identities=11% Similarity=0.189 Sum_probs=201.3
Q ss_pred CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (326)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~ 130 (326)
...+.++.|. +.+++|++|+.||+|++||+.+++....+. .|.+.|.++.+.+ ++..+++++
T Consensus 108 ~~~V~~~~~~--p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~--------~h~~~V~~v~~~~--------~~~~l~sgs 169 (410)
T 1vyh_C 108 RSPVTRVIFH--PVFSVMVSASEDATIKVWDYETGDFERTLK--------GHTDSVQDISFDH--------SGKLLASCS 169 (410)
T ss_dssp SSCEEEEEEC--SSSSEEEEEESSSCEEEEETTTCCCCEEEC--------CCSSCEEEEEECT--------TSSEEEEEE
T ss_pred CCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEEe--------ccCCcEEEEEEcC--------CCCEEEEEe
Confidence 3445555554 456699999999999999999988877665 5668899998755 567899999
Q ss_pred cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCc
Q 020454 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (326)
Q Consensus 131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 210 (326)
.||.|++||+.... .++.+. .+...|.+++|+|++++|++|+.|++|++||+++++.+..+..|.
T Consensus 170 ~D~~i~iwd~~~~~--------~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~------ 234 (410)
T 1vyh_C 170 ADMTIKLWDFQGFE--------CIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR------ 234 (410)
T ss_dssp TTSCCCEEETTSSC--------EEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS------
T ss_pred CCCeEEEEeCCCCc--------eeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC------
Confidence 99999999986533 222222 346789999999999999999999999999999999888777654
Q ss_pred CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC--------------------C
Q 020454 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD--------------------S 270 (326)
Q Consensus 211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~--------------------~ 270 (326)
.+|..+.|+| ++.+|++++.|++|++||+++. .....+..|...|.+++|+|+ +
T Consensus 235 ---~~v~~~~~~~--~g~~l~s~s~D~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 308 (410)
T 1vyh_C 235 ---EWVRMVRPNQ--DGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308 (410)
T ss_dssp ---SCEEEEEECT--TSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred ---ccEEEEEECC--CCCEEEEEcCCCeEEEEECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCC
Confidence 5688999987 5679999999999999999977 667888899999999999996 6
Q ss_pred CeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 271 FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 271 ~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.+|++|+.||.|++||+++++++..+.+| ...|++++|+|++++|++||.||.+
T Consensus 309 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~D~~i 362 (410)
T 1vyh_C 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTL 362 (410)
T ss_dssp CEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEE
T ss_pred CEEEEEeCCCeEEEEECCCCceEEEEECC-CCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 78999999999999999999999999998 9999999999999999999999975
No 19
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.9e-35 Score=252.02 Aligned_cols=283 Identities=10% Similarity=0.034 Sum_probs=216.7
Q ss_pred eeeeeecCcccEEEEEecCCcC-CCcceeeeccCCCCCceEEEEEeeeC--CCC---CeEEEEecCCcEEEEeccccce-
Q 020454 15 LRALTFDSLGLIKVIEARGEHG-GVPKVVERWGDPHSSNCVLAASIDDS--QND---PLLAVARKNGLTDILNPLNGDL- 87 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~l~~g~~dg~i~i~~~~~~~~- 87 (326)
-.+++++.||.|++|++..+.. ........+..+ ...+.++.|... ..+ .+|++++.||.|++|++.+++.
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~ 104 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH--KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET 104 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC--TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecC--CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc
Confidence 6899999999999999987610 011133344333 334555555443 225 6899999999999999987775
Q ss_pred ----eeeecccCCCCCCCC--CCCeeeeecc----cccccccCCCCce-EEEEecCCcEEEEEccc------cccccccc
Q 020454 88 ----RVAISNAGDSGAQPE--DDGIVGLHLF----KRQREESSSRSRT-LLTCTTKGKASMRSIEV------TKVSAESS 150 (326)
Q Consensus 88 ----~~~~~~~~~~~~~~~--~~~i~~l~~~----~~~~~~~~~~~~~-l~~~~~~g~v~i~~~~~------~~~~~~~~ 150 (326)
...+... ..+ ...|.++.+. + ++.. +++++.||.|++|++.. .....-..
T Consensus 105 ~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~--------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 171 (397)
T 1sq9_A 105 KKVIFEKLDLL-----DSDMKKHSFWALKWGASNDR--------LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 171 (397)
T ss_dssp CCEEEEEECCS-----CTTGGGSCEEEEEEECCC------------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred ccccceeeccc-----ccccCCCcEEEEEEeeccCC--------CCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence 4444421 011 4789989886 4 5667 99999999999999886 33211011
Q ss_pred cceEEEEE------ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecC---CCCCCCCcCCCCceeeeEE
Q 020454 151 CSTVKSWN------VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP---PPKNSLGIFTPTWFTSAAF 221 (326)
Q Consensus 151 ~~~~~~~~------~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~ 221 (326)
...+. ..+...|.+++|+|++ +|++++.|+.|++||+++++.+..+.. |... ...|.+++|
T Consensus 172 ---~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~------~~~i~~i~~ 241 (397)
T 1sq9_A 172 ---TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN------SNSIRSVKF 241 (397)
T ss_dssp ---EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC------CCCEEEEEE
T ss_pred ---cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc------CCccceEEE
Confidence 11222 2356789999999999 999999999999999999988887765 4100 256899999
Q ss_pred eecCCCcEEEEEeCC---CeEEEEeCCCCCCceeEEee-------------cCCceEEEEecCCCCeEEEEcCCCcEEEE
Q 020454 222 LSIDDHRKFVAGTND---HQVRLYDTSAQRRPVMSFDF-------------RETPIKAVAEEPDSFNIYIGNGSGDLASV 285 (326)
Q Consensus 222 ~p~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~-------------~~~~i~~v~~s~~~~~l~~g~~dg~v~iw 285 (326)
+| ++++|++++.| +.|++||+++. +++..+.. |...|.+++|+|++++|++++.||.|++|
T Consensus 242 ~~--~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 242 SP--QGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp CS--STTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred CC--CCCEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 98 46699999999 99999999987 67888887 89999999999999999999999999999
Q ss_pred ECCCCeEEEEEc------ce--------------ecceEEEEEECCCC----------CEEEEeccCccC
Q 020454 286 DIRTGKLLGCFI------GK--------------CSGSIRSIARHPTL----------PIIASCGFLEAA 325 (326)
Q Consensus 286 d~~~~~~~~~~~------~~--------------~~~~v~~l~~~p~~----------~~l~s~s~D~~~ 325 (326)
|+++++++..+. +| |..+|++++|+|++ ++|++++.||.+
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i 388 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 388 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence 999999999988 53 27899999999998 799999999975
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2e-34 Score=258.62 Aligned_cols=258 Identities=15% Similarity=0.219 Sum_probs=209.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..+++++.+|.|++|+..+. .+ ..+.. +...+.++.+ ++++++|++|+.||.|++|+. +++.+..+.
T Consensus 316 ~~l~t~~~d~~i~~w~~~~~-----~~-~~~~~--~~~~v~~~~~--s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-- 382 (577)
T 2ymu_A 316 QTIASASDDKTVKLWNRNGQ-----HL-QTLTG--HSSSVWGVAF--SPDGQTIASASDDKTVKLWNR-NGQLLQTLT-- 382 (577)
T ss_dssp SEEEEEETTSCEEEEETTSC-----EE-EEECC--CSSCEEEEEE--CTTSSEEEEEETTSEEEEEET-TCCEEEEEE--
T ss_pred CEEEEEeCCCeEEEEeCCCC-----ee-EEEeC--CCCCEEEEEE--CCCCCEEEEEeCCCEEEEEcC-CCCEEEEec--
Confidence 57889999999999998765 22 22322 2334444444 455668999999999999997 566555554
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.+...|.++.+.+ ++..+++++.|+.|++|+.... .++.+. .+...|.+++|+|++
T Consensus 383 ------~~~~~v~~~~~s~--------dg~~l~~~~~d~~v~~~~~~~~---------~~~~~~-~~~~~v~~~~~s~d~ 438 (577)
T 2ymu_A 383 ------GHSSSVRGVAFSP--------DGQTIASASDDKTVKLWNRNGQ---------LLQTLT-GHSSSVWGVAFSPDD 438 (577)
T ss_dssp ------CCSSCEEEEEECT--------TSSCEEEEETTSEEEEECTTCC---------EEEEEE-CCSSCEEEEEECTTS
T ss_pred ------CCCCCeEEEEECC--------CCCEEEEEeCCCEEEEEeCCCC---------EEEEec-CCCCCeEEEEECCCC
Confidence 4557899888755 5678999999999999985321 233333 356789999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
++|++++.|+.|++||.. ++.+..+..|. ..|++++|+| ++++|++++.|+.|++||.. + +.+..+
T Consensus 439 ~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~---------~~v~~~~~sp--d~~~las~~~d~~i~iw~~~-~-~~~~~~ 504 (577)
T 2ymu_A 439 QTIASASDDKTVKLWNRN-GQLLQTLTGHS---------SSVRGVAFSP--DGQTIASASDDKTVKLWNRN-G-QLLQTL 504 (577)
T ss_dssp SEEEEEETTSEEEEEETT-SCEEEEEECCS---------SCEEEEEECT--TSCEEEEEETTSEEEEEETT-S-CEEEEE
T ss_pred CEEEEEcCCCEEEEEECC-CCEEEEEcCCC---------CCEEEEEEcC--CCCEEEEEeCCCEEEEEcCC-C-CEEEEE
Confidence 999999999999999964 55555555543 5688999998 56799999999999999964 4 568889
Q ss_pred eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..|...|++++|+|++++|++++.||.|++||. +++++..+.+| .+.|++++|+|++++|+|+|.|+.+
T Consensus 505 ~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h-~~~v~~~~fs~dg~~l~s~~~D~~i 573 (577)
T 2ymu_A 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVWGVAFSPDGQTIASASSDKTV 573 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCE
T ss_pred eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 999999999999999999999999999999995 68889999998 9999999999999999999999975
No 21
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-34 Score=246.84 Aligned_cols=264 Identities=15% Similarity=0.151 Sum_probs=213.1
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++++.+|.|++|++.++ +....+.. .+...+.+++|. +++++|++|+.||.|++||+.+++.+..+.
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~-----~~~~~~~~-~~~~~v~~v~~s--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-- 173 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSG-----SVSALAET-DESTYVASVKWS--HDGSFLSVGLGNGLVDIYDVESQTKLRTMA-- 173 (401)
T ss_dssp TSEEEEEETTEEEEEETTTC-----CEEEEEEC-CTTCCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEEC--
T ss_pred CCEEEEECCCeEEEeeCCCC-----cEeEeeec-CCCCCEEEEEEC--CCCCEEEEECCCCeEEEEECcCCeEEEEec--
Confidence 45899999999999999877 33333332 234455556554 456799999999999999999888776665
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.+...|.++.+ ++..+++++.||.|++|++.... ..+..+. .+...|.+++|+|++
T Consensus 174 ------~~~~~v~~~~~----------~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~-~~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 174 ------GHQARVGCLSW----------NRHVLSSGSRSGAIHHHDVRIAN-------HQIGTLQ-GHSSEVCGLAWRSDG 229 (401)
T ss_dssp ------CCSSCEEEEEE----------ETTEEEEEETTSEEEEEETTSSS-------CEEEEEE-CCSSCEEEEEECTTS
T ss_pred ------CCCCceEEEEE----------CCCEEEEEcCCCCEEEEecccCc-------ceeeEEc-CCCCCeeEEEEcCCC
Confidence 55678998887 34689999999999999987432 1333443 357789999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe--CCCeEEEEeCCCCCCcee
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLYDTSAQRRPVM 252 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~ 252 (326)
++|++|+.|+.|++||+++++.+..+..+. ..|.+++|+|. ...++++++ .|+.|++||++++ +++.
T Consensus 230 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~~p~-~~~ll~~~~gs~d~~i~i~d~~~~-~~~~ 298 (401)
T 4aez_A 230 LQLASGGNDNVVQIWDARSSIPKFTKTNHN---------AAVKAVAWCPW-QSNLLATGGGTMDKQIHFWNAATG-ARVN 298 (401)
T ss_dssp SEEEEEETTSCEEEEETTCSSEEEEECCCS---------SCCCEEEECTT-STTEEEEECCTTTCEEEEEETTTC-CEEE
T ss_pred CEEEEEeCCCeEEEccCCCCCccEEecCCc---------ceEEEEEECCC-CCCEEEEecCCCCCEEEEEECCCC-CEEE
Confidence 999999999999999999988887776544 56889999985 344777765 7999999999977 5666
Q ss_pred EEeecCCceEEEEecCCCCeEEE--EcCCCcEEEEECCCCeEEE--EEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 253 SFDFRETPIKAVAEEPDSFNIYI--GNGSGDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 253 ~~~~~~~~i~~v~~s~~~~~l~~--g~~dg~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.+. +...|.+++|+|+++++++ |+.||.|++||+.+++... .+.+| .+.|.+++|+|++++|++++.||.+
T Consensus 299 ~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~~~dg~i 373 (401)
T 4aez_A 299 TVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSPDGRILSTAASDENL 373 (401)
T ss_dssp EEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECTTSSEEEEECTTSEE
T ss_pred EEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECCCCCEEEEEeCCCcE
Confidence 775 5578999999999999998 5589999999999976554 46687 9999999999999999999999975
No 22
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.5e-34 Score=247.30 Aligned_cols=263 Identities=14% Similarity=0.142 Sum_probs=210.3
Q ss_pred eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCC
Q 020454 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (326)
Q Consensus 17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~ 96 (326)
+++.+.|+.|+|||+.++ ++...+..+.+...+.+++|. +++++|++|+.||+|+|||+++++.+..+.
T Consensus 118 ~lAvgld~tV~lWd~~tg-----~~~~~~~~~~~~~~V~sv~fs--pdg~~lasgs~Dg~v~iWd~~~~~~~~~~~---- 186 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSG-----DILQLLQMEQPGEYISSVAWI--KEGNYLAVGTSSAEVQLWDVQQQKRLRNMT---- 186 (420)
T ss_dssp EEEEEETTEEEEEETTTC-----CEEEEEECCSTTCCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEEC----
T ss_pred EEEEEeCCEEEEEECCCC-----CEEEEEEecCCCCcEEEEEEC--CCCCEEEEEECCCeEEEEEcCCCcEEEEEe----
Confidence 566667999999999987 454444444555566666664 456799999999999999999988877665
Q ss_pred CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCE
Q 020454 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (326)
Q Consensus 97 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 176 (326)
.|...+.++.+ +...+++++.|+.+.+|+...... .+..+. .+...+..+.++|++++
T Consensus 187 ----~h~~~v~~~s~----------~~~~l~sgs~d~~i~~~d~~~~~~-------~~~~~~-~h~~~~~~~~~~~~g~~ 244 (420)
T 4gga_A 187 ----SHSARVGSLSW----------NSYILSSGSRSGHIHHHDVRVAEH-------HVATLS-GHSQEVCGLRWAPDGRH 244 (420)
T ss_dssp ----CCSSCEEEEEE----------ETTEEEEEETTSEEEEEETTSSSC-------EEEEEE-CCSSCEEEEEECTTSSE
T ss_pred ----CCCCceEEEee----------CCCEEEEEeCCCceeEeeecccce-------eeEEec-ccccceeeeeecCCCCe
Confidence 55677887775 457899999999999999765332 333343 35678999999999999
Q ss_pred EEEecCCCeEEEEECCCceee----eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE--eCCCeEEEEeCCCCCCc
Q 020454 177 SLFGGKGVEVNVWDLDKCEKI----WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG--TNDHQVRLYDTSAQRRP 250 (326)
Q Consensus 177 l~sg~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~--~~dg~v~iwd~~~~~~~ 250 (326)
+++++.|+.+++||..+++.. ..... +...|.+++|+|.. ..+++++ +.|++|++||++++ .+
T Consensus 245 l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~---------~~~~V~~~~~~p~~-~~~la~~~gs~D~~I~iwd~~t~-~~ 313 (420)
T 4gga_A 245 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQ---------HQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSG-AC 313 (420)
T ss_dssp EEEEETTSCEEEEESSCCSSCSCCSEEECC---------CSSCEEEEEECTTC-TTEEEEEECTTTCEEEEEETTTT-EE
T ss_pred eeeeeccccceEEeeccccccceeeeeecc---------cCCceeeeeeCCCc-ccEEEEEeecCCCEEEEEeCCcc-cc
Confidence 999999999999999876532 22222 33568999999963 4466654 57999999999987 55
Q ss_pred eeEEeecCCceEEEEecCCCCeEEEEc--CCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 251 VMSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 251 ~~~~~~~~~~i~~v~~s~~~~~l~~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
...+..+ ..+.++.|+|+++.+++++ .||.|++||+++++++..+.+| .+.|++++|+|++++|+|||.||++
T Consensus 314 ~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH-~~~V~~l~~spdg~~l~S~s~D~tv 388 (420)
T 4gga_A 314 LSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADETL 388 (420)
T ss_dssp EEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTTEE
T ss_pred ceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCeE
Confidence 6666555 6788999999999988654 7999999999999999999998 9999999999999999999999975
No 23
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.3e-34 Score=245.05 Aligned_cols=282 Identities=15% Similarity=0.204 Sum_probs=215.8
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCC--CCeEEEEecCCcEEEEeccccceeeeec
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN--DPLLAVARKNGLTDILNPLNGDLRVAIS 92 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~dg~i~i~~~~~~~~~~~~~ 92 (326)
..+++++.+|.|++|++..+ +..+....+..+.+...+.+++|..... +++|++|+.||.|++||+.+++.+..+.
T Consensus 35 ~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 35 PLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV 112 (366)
T ss_dssp CEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE
T ss_pred ceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec
Confidence 55788888889999999866 2222333344444556677777766543 6799999999999999999888777665
Q ss_pred ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE--ccCCCceEEEEE
Q 020454 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKV 170 (326)
Q Consensus 93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~ 170 (326)
.+...|.++.+.+. +...+++++.||.|++|++.... .+..+. ..+...|.+++|
T Consensus 113 --------~~~~~i~~~~~~~~-------~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 113 --------GHGNAINELKFHPR-------DPNLLLSVSKDHALRLWNIQTDT--------LVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp --------SCCSCEEEEEECSS-------CTTEEEEEETTSCEEEEETTTTE--------EEEEECSTTSCSSCEEEEEE
T ss_pred --------CCCCcEEEEEECCC-------CCCEEEEEeCCCeEEEEEeecCe--------EEEEecccccccCceeEEEE
Confidence 45688999987541 34689999999999999987543 344442 245778999999
Q ss_pred cCCCCEEEEecCCCeEEEEECCCceeeeeecCC-------------------CCCCCCcCCCCceeeeEEeecCCCcEEE
Q 020454 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP-------------------PKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (326)
Q Consensus 171 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~~p~~~~~~l~ 231 (326)
+|++++|++++.|+.|++||+++++....+... ........+...|.+++|+ +++++
T Consensus 170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~ 245 (366)
T 3k26_A 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL----GDLIL 245 (366)
T ss_dssp CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE----TTEEE
T ss_pred CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc----CCEEE
Confidence 999999999999999999999987544322210 0000001144678999997 33999
Q ss_pred EEeCCCeEEEEeCCCCCC-------------ceeEEeecCCceEEEEecCC--CCeEEEEcCCCcEEEEECCCCe----E
Q 020454 232 AGTNDHQVRLYDTSAQRR-------------PVMSFDFRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRTGK----L 292 (326)
Q Consensus 232 ~~~~dg~v~iwd~~~~~~-------------~~~~~~~~~~~i~~v~~s~~--~~~l~~g~~dg~v~iwd~~~~~----~ 292 (326)
+++.|+.|++||++.... .+..+..|...|++++|+|+ +++|++|+.||.|++||+++++ .
T Consensus 246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 325 (366)
T 3k26_A 246 SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK 325 (366)
T ss_dssp EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence 999999999999886532 25667788889999999999 9999999999999999999875 3
Q ss_pred EEEEcce-ecceEEEEEECCCCCEEEEeccCccC
Q 020454 293 LGCFIGK-CSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 293 ~~~~~~~-~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
...+.+| +...|++++|+|++++|++++.||.+
T Consensus 326 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 359 (366)
T 3k26_A 326 CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASI 359 (366)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceEEcccccCCceEEEEeCCCCCeEEEEeCCCEE
Confidence 4466654 15899999999999999999999975
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-34 Score=244.40 Aligned_cols=276 Identities=13% Similarity=0.128 Sum_probs=218.8
Q ss_pred eeeeecCcccEEEEEe----cCCcCCCcc--eeeeccC--C------CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEe
Q 020454 16 RALTFDSLGLIKVIEA----RGEHGGVPK--VVERWGD--P------HSSNCVLAASIDDSQNDPLLAVARKNGLTDILN 81 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~----~~~~~~~~~--~~~~~~~--~------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~ 81 (326)
.+++++.+|.|++|++ .++ ..... ....+.. . .+...+.++.|. +++++|++|+.||.|++||
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~i~~ 136 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEG-KKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS--HDGNSIVTGVENGELRLWN 136 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEEC--TTSSEEEEEETTSCEEEEE
T ss_pred EEEEecCCceEEEEEEecccCCc-cccccccccccccccccccccccCCCCceEEEEEc--CCCCEEEEEeCCCeEEEEe
Confidence 7999999999999999 665 10000 1111111 1 123355566654 4567999999999999999
Q ss_pred ccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc----------------
Q 020454 82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------------- 145 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~---------------- 145 (326)
. +++.+..+. .+...|.++.+.+ ++..+++++.||.+++|++.....
T Consensus 137 ~-~~~~~~~~~--------~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 137 K-TGALLNVLN--------FHRAPIVSVKWNK--------DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp T-TSCEEEEEC--------CCCSCEEEEEECT--------TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred C-CCCeeeecc--------CCCccEEEEEECC--------CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 4 666655554 4567899998765 567899999999999999864321
Q ss_pred ---------------------ccccccceEEEEEccC----------CCceEEEEEcCCCCEEEEecCCCeEEEEECCCc
Q 020454 146 ---------------------SAESSCSTVKSWNVCA----------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC 194 (326)
Q Consensus 146 ---------------------~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 194 (326)
+.+..++.+++|+... ...|.+++|+|++++|++++.|+.|++||++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp ------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 1233467788888653 346899999999999999999999999999998
Q ss_pred eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE
Q 020454 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY 274 (326)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~ 274 (326)
+.+..+..+. ..|.+++|+| ++ ++++++.|+.|++||+++. +.+..+..|...|.+++|+|++++|+
T Consensus 280 ~~~~~~~~~~---------~~i~~~~~~~--~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~ 346 (425)
T 1r5m_A 280 NSQNCFYGHS---------QSIVSASWVG--DD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYA 346 (425)
T ss_dssp SCSEEECCCS---------SCEEEEEEET--TT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEE
T ss_pred ccceEecCCC---------ccEEEEEECC--CC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEE
Confidence 8877765543 5688999998 45 9999999999999999977 56788888899999999999999999
Q ss_pred EEcCCCcEEEEECCCCe--------------------EEEEEcceecc--eEEEEEECCCCCEEEEeccCccC
Q 020454 275 IGNGSGDLASVDIRTGK--------------------LLGCFIGKCSG--SIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 275 ~g~~dg~v~iwd~~~~~--------------------~~~~~~~~~~~--~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++.||.|++||+++++ ++..+.+| .. .|++++|+|++++|++++.||.+
T Consensus 347 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 347 VAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS-QDNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp EEETTSCEEEEECHHHHC--------------CEECCEEEEECCT-TCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred EEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc-ccCCceEEEEccCCCceEEEEecCceE
Confidence 99999999999999888 88899987 66 99999999999999999999975
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-34 Score=250.12 Aligned_cols=281 Identities=10% Similarity=0.099 Sum_probs=216.4
Q ss_pred eeeee----------cCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc-
Q 020454 16 RALTF----------DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN- 84 (326)
Q Consensus 16 ~l~~~----------~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~- 84 (326)
.++++ +.+|.|++|++..+... +....+ .+...+.+++| ++++++|++|+.||.|++|++.+
T Consensus 27 ~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--~~~~~~---~~~~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~ 99 (416)
T 2pm9_A 27 LLVSGTVSGTVDANFSTDSSLELWSLLAADSE--KPIASL---QVDSKFNDLDW--SHNNKIIAGALDNGSLELYSTNEA 99 (416)
T ss_dssp EEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--SCSCCC---CCSSCEEEEEE--CSSSSCEEEEESSSCEEEECCSST
T ss_pred EEEEEecCcccccccCCCCeEEEEEccCCCCC--cEEEEE---ecCCceEEEEE--CCCCCeEEEEccCCeEEEeecccc
Confidence 67777 78999999999876111 121122 23344555665 44566899999999999999976
Q ss_pred ---cceeeeecccCCCCCCCCCCCeeeeecccccccccCCC-CceEEEEecCCcEEEEEccccccccccccceEEE-EEc
Q 020454 85 ---GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR-SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS-WNV 159 (326)
Q Consensus 85 ---~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~-~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~-~~~ 159 (326)
.+.+..+. .|...|.++.+.+ + ...+++++.||.|++|++.......... ..... ...
T Consensus 100 ~~~~~~~~~~~--------~h~~~v~~~~~~~--------~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~ 162 (416)
T 2pm9_A 100 NNAINSMARFS--------NHSSSVKTVKFNA--------KQDNVLASGGNNGEIFIWDMNKCTESPSNY-TPLTPGQSM 162 (416)
T ss_dssp TSCCCEEEECC--------CSSSCCCEEEECS--------SSTTBEEEECSSSCEEBCBTTTTSSCTTTC-CCBCCCCSC
T ss_pred cccccchhhcc--------CCccceEEEEEcC--------CCCCEEEEEcCCCeEEEEECCCCccccccc-ccccccccc
Confidence 22333332 5667899888755 3 5789999999999999987654100000 00000 012
Q ss_pred cCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-
Q 020454 160 CASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH- 237 (326)
Q Consensus 160 ~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg- 237 (326)
.+...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+... ..+...|++++|+|. +..++++++.|+
T Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~~l~~~~~d~~ 238 (416)
T 2pm9_A 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN---SGIKQQLSVVEWHPK-NSTRVATATGSDN 238 (416)
T ss_dssp CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS---SCCCCCEEEEEECSS-CTTEEEEEECCSS
T ss_pred CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc---cccCCceEEEEECCC-CCCEEEEEECCCC
Confidence 34678999999999 799999999999999999999888777654311 112356999999985 335899999999
Q ss_pred --eEEEEeCCCCCCceeEEe-ecCCceEEEEecC-CCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454 238 --QVRLYDTSAQRRPVMSFD-FRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (326)
Q Consensus 238 --~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~ 313 (326)
.|++||++....++..+. .|...|++++|+| ++++|++++.||.|++||+++++++..+.+| ...|.+++|+|++
T Consensus 239 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~ 317 (416)
T 2pm9_A 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-GNWCFKTKFAPEA 317 (416)
T ss_dssp SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-SSCCCCEEECTTC
T ss_pred CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-CCceEEEEECCCC
Confidence 999999998656777887 8999999999999 8999999999999999999999999999998 9999999999998
Q ss_pred -CEEEEeccCccC
Q 020454 314 -PIIASCGFLEAA 325 (326)
Q Consensus 314 -~~l~s~s~D~~~ 325 (326)
.+|++++.||.+
T Consensus 318 ~~~l~s~~~d~~i 330 (416)
T 2pm9_A 318 PDLFACASFDNKI 330 (416)
T ss_dssp TTEEEECCSSSEE
T ss_pred CCEEEEEecCCcE
Confidence 899999999875
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=241.13 Aligned_cols=240 Identities=9% Similarity=0.063 Sum_probs=182.7
Q ss_pred CCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (326)
Q Consensus 13 ~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~ 92 (326)
|.-++++|+.||.|+|||+.++ ...... .+....+...+.+++|. +++++|++|+.||+|++||+.+++.+..+.
T Consensus 92 ~d~~l~~~s~dg~v~lWd~~~~-~~~~~~--~~~~~~H~~~V~~v~~s--pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~ 166 (344)
T 4gqb_B 92 GERGILVASDSGAVELWELDEN-ETLIVS--KFCKYEHDDIVSTVSVL--SSGTQAVSGSKDICIKVWDLAQQVVLSSYR 166 (344)
T ss_dssp TTTEEEEEETTSEEEEEEECTT-SSCEEE--EEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCeEEEEECCCEEEEEeccCC-CceeEe--eccccCCCCCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 3467999999999999999876 222111 22222344556666654 456799999999999999999998877765
Q ss_pred ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE-ccCCCceEEEEEc
Q 020454 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVD 171 (326)
Q Consensus 93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~ 171 (326)
.|.+.|.++.+.+. ....+++++.|+.|++||+.... .+..+. ..+...+.+++|+
T Consensus 167 --------~h~~~V~~~~~~~~-------~~~~l~s~s~D~~v~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~ 223 (344)
T 4gqb_B 167 --------AHAAQVTCVAASPH-------KDSVFLSCSEDNRILLWDTRCPK--------PASQIGCSAPGYLPTSLAWH 223 (344)
T ss_dssp --------CCSSCEEEEEECSS-------CTTEEEEEETTSCEEEEETTSSS--------CEEECC----CCCEEEEEEC
T ss_pred --------CcCCceEEEEecCC-------CCCceeeeccccccccccccccc--------eeeeeecceeeccceeeeec
Confidence 56688998887551 22468899999999999987544 222221 1234568999999
Q ss_pred CC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 020454 172 IS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (326)
Q Consensus 172 ~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~ 250 (326)
|+ +++|++|+.|+.|++||+++++++..+..|. ..|++++|+|. ..++|++++.|++|++||++++ +
T Consensus 224 p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~---------~~v~~v~fsp~-g~~~lasgs~D~~i~vwd~~~~-~- 291 (344)
T 4gqb_B 224 PQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS---------QCVTGLVFSPH-SVPFLASLSEDCSLAVLDSSLS-E- 291 (344)
T ss_dssp SSCTTEEEEEETTSEEEEEESCC--CCEEEECCS---------SCEEEEEECSS-SSCCEEEEETTSCEEEECTTCC-E-
T ss_pred CCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC---------CCEEEEEEccC-CCeEEEEEeCCCeEEEEECCCC-c-
Confidence 96 5789999999999999999999888887765 56899999984 2358999999999999999876 3
Q ss_pred eeEEeecCCceEEEEecCCCCe-EEEEcCCCcEEEEECCCCeE
Q 020454 251 VMSFDFRETPIKAVAEEPDSFN-IYIGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 251 ~~~~~~~~~~i~~v~~s~~~~~-l~~g~~dg~v~iwd~~~~~~ 292 (326)
+..+..|...|++++|+|+++. |++|+.||+|++|++.+...
T Consensus 292 ~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 292 LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 5677889999999999999865 56899999999999987543
No 27
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.6e-34 Score=259.35 Aligned_cols=260 Identities=10% Similarity=0.059 Sum_probs=201.8
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee--eeecc
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--VAISN 93 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~--~~~~~ 93 (326)
+|+++. ++.|++|++..+ +....+..+.. .+.++.+. +++++|++|+.||+|+|||+.+++.. ..+.
T Consensus 32 ~l~~~~-~~~v~l~~~~~~-----~~~~~~~~h~~--~v~~~~~s--pdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~- 100 (611)
T 1nr0_A 32 KIQYCN-GTSVYTVPVGSL-----TDTEIYTEHSH--QTTVAKTS--PSGYYCASGDVHGNVRIWDTTQTTHILKTTIP- 100 (611)
T ss_dssp EEEEEE-TTEEEEEETTCS-----SCCEEECCCSS--CEEEEEEC--TTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-
T ss_pred EEEeCC-CCEEEEecCCCc-----ccCeEecCCCC--ceEEEEEC--CCCcEEEEEeCCCCEEEeECCCCcceeeEeec-
Confidence 455555 579999999865 34444544433 34455553 45679999999999999999654432 2222
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC----CcEEEEEccccccccccccceEEEEEccCCCceEEEE
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~----g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 169 (326)
.+.++|.++++.+ ++..+++++.+ +.|++|+..... .. + ..+...|.+++
T Consensus 101 -------~~~~~v~~v~fs~--------dg~~l~~~~~~~~~~~~v~~wd~~~~~-------~~---l-~gh~~~v~~v~ 154 (611)
T 1nr0_A 101 -------VFSGPVKDISWDS--------ESKRIAAVGEGRERFGHVFLFDTGTSN-------GN---L-TGQARAMNSVD 154 (611)
T ss_dssp -------CSSSCEEEEEECT--------TSCEEEEEECCSSCSEEEEETTTCCBC-------BC---C-CCCSSCEEEEE
T ss_pred -------ccCCceEEEEECC--------CCCEEEEEECCCCceeEEEEeeCCCCc-------ce---e-cCCCCCceEEE
Confidence 4557899999765 56678777765 367777632211 11 1 23567899999
Q ss_pred EcCCCC-EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC
Q 020454 170 VDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (326)
Q Consensus 170 ~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~ 248 (326)
|+|++. .|++|+.|++|++||..+.+....+..|. .+|.+++|+| ++++|++++.|++|++||+.++
T Consensus 155 f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~---------~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g- 222 (611)
T 1nr0_A 155 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT---------KFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDG- 222 (611)
T ss_dssp ECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCS---------SCEEEEEECT--TSSEEEEEETTSCEEEEETTTC-
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecccc---------CceEEEEECC--CCCEEEEEECCCcEEEEECCCC-
Confidence 999986 69999999999999999888877777654 6799999998 5679999999999999999877
Q ss_pred CceeEEe-------ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE--------------------------
Q 020454 249 RPVMSFD-------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-------------------------- 295 (326)
Q Consensus 249 ~~~~~~~-------~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~-------------------------- 295 (326)
+.+..+. .|...|.+++|+|++++|++++.|++|++||+++++++..
T Consensus 223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 5566663 6889999999999999999999999999999998766543
Q ss_pred -----------------EcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 296 -----------------FIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 296 -----------------~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+.+| ...|++++|+|++++|++++.|+.+
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh-~~~v~~l~~spdg~~l~s~s~D~~v 348 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGH-NKAITALSSSADGKTLFSADAEGHI 348 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCcEEEEeCCCCCcceEEcCC-CCCEEEEEEeCCCCEEEEEeCCCcE
Confidence 3466 8899999999999999999999975
No 28
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.1e-34 Score=262.76 Aligned_cols=269 Identities=10% Similarity=0.067 Sum_probs=207.7
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.|++|+.||.|++|++.............+. .+...+.++++. +++++|++|+.||+|+|||+.+++....+.
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--~h~~~v~~v~~s--~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~-- 469 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--GHSHFVEDVVLS--SDGQFALSGSWDGELRLWDLAAGVSTRRFV-- 469 (694)
T ss_dssp SEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--CCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEE--
T ss_pred CEEEEEeCCCcEEEEEccCCCcccccccceec--CCCCcEEEEEEC--CCCCEEEEEeCCCcEEEEECCCCcceeEEe--
Confidence 46899999999999999865211111222333 233444555553 456799999999999999999888766665
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE--ccCCCceEEEEEcC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKVDI 172 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~ 172 (326)
.|...|.++.+.+ ++..+++++.|+.|++|+..... ...+.. ..+...|.+++|+|
T Consensus 470 ------~h~~~v~~~~~s~--------~~~~l~s~s~D~~i~iwd~~~~~--------~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 470 ------GHTKDVLSVAFSL--------DNRQIVSASRDRTIKLWNTLGEC--------KYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp ------CCSSCEEEEEECT--------TSSCEEEEETTSCEEEECTTSCE--------EEEECSSTTSCSSCEEEEEECS
T ss_pred ------CCCCCEEEEEEeC--------CCCEEEEEeCCCEEEEEECCCCc--------ceeeccCCCCCCCcEEEEEEeC
Confidence 5668899998765 56789999999999999964321 111111 12456799999999
Q ss_pred CC--CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 020454 173 SE--KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (326)
Q Consensus 173 ~~--~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~ 250 (326)
++ .+|++|+.|+.|++||+++++....+..|. ..|++++|+| ++++|++++.||.|++||++++ +.
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~---------~~v~~v~~sp--dg~~l~sg~~Dg~i~iwd~~~~-~~ 595 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT---------GYVSTVAVSP--DGSLCASGGKDGVVLLWDLAEG-KK 595 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEECT--TSSEEEEEETTSBCEEEETTTT-EE
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC---------CCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCC-ce
Confidence 86 689999999999999999988887777654 5689999998 5679999999999999999987 45
Q ss_pred eeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceec------------------ceEEEEEECCC
Q 020454 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS------------------GSIRSIARHPT 312 (326)
Q Consensus 251 ~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~------------------~~v~~l~~~p~ 312 (326)
+..+.. ...|.+++|+|++.++++++ ++.|++||+++++.+..+..+.. ..+++++|+|+
T Consensus 596 ~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd 673 (694)
T 3dm0_A 596 LYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673 (694)
T ss_dssp EECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred EEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence 555544 46899999999998887765 55699999999998877754311 13789999999
Q ss_pred CCEEEEeccCccC
Q 020454 313 LPIIASCGFLEAA 325 (326)
Q Consensus 313 ~~~l~s~s~D~~~ 325 (326)
+++|++||.||.+
T Consensus 674 g~~l~sgs~Dg~i 686 (694)
T 3dm0_A 674 GSTLFSGYTDGVI 686 (694)
T ss_dssp SSEEEEEETTSEE
T ss_pred CCEEEEEcCCCeE
Confidence 9999999999976
No 29
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-33 Score=254.05 Aligned_cols=268 Identities=17% Similarity=0.236 Sum_probs=215.5
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..+++++.+|.|++|+.... ....+..+ ...+.++.+ .+++++|++++.|+.|++|+. +++....+.
T Consensus 234 ~~l~~~~~d~~i~~w~~~~~------~~~~~~~~--~~~v~~v~~--~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~-- 300 (577)
T 2ymu_A 234 QTIASASDDKTVKLWNRNGQ------LLQTLTGH--SSSVNGVAF--RPDGQTIASASDDKTVKLWNR-NGQLLQTLT-- 300 (577)
T ss_dssp SCEEEEETTSCEEEECTTSC------EEEEECCC--SSCEEEEEE--CTTSSEEEEEETTSCEEEEET-TSCEEEEEC--
T ss_pred CEEEEEeCCCEEEEEeCCCC------EEEEEecC--CCCEEEEEE--cCCCCEEEEEeCCCEEEEEeC-CCcEEEEEe--
Confidence 46889999999999997643 33333333 334445555 345668999999999999997 455545443
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc----------------------ccccccc
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----------------------SAESSCS 152 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~----------------------~~~~~~~ 152 (326)
.+...|.++.+.+ +...+++++.||.+++|++..... +++..++
T Consensus 301 ------~h~~~v~~~~~~~--------~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 366 (577)
T 2ymu_A 301 ------GHSSSVWGVAFSP--------DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK 366 (577)
T ss_dssp ------CCSSCEEEEEECT--------TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ------cCCCCeEEEEECC--------CCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 5567898888755 567899999999999999764321 3345677
Q ss_pred eEEEEEcc---------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454 153 TVKSWNVC---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (326)
Q Consensus 153 ~~~~~~~~---------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 223 (326)
.+++|+.. +...|.+++|+|++++|++++.|+.|++||. +++.+..+..|. ..|++++|+|
T Consensus 367 ~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~---------~~v~~~~~s~ 436 (577)
T 2ymu_A 367 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS---------SSVWGVAFSP 436 (577)
T ss_dssp EEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCS---------SCEEEEEECT
T ss_pred EEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCC---------CCeEEEEECC
Confidence 88888853 2456899999999999999999999999995 455555555543 5688999998
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecce
Q 020454 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (326)
Q Consensus 224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~ 303 (326)
++++|++++.|+.|++||.. . +.+..+..|...|++++|+|++++|++++.|+.|++||. +++++..+.+| ...
T Consensus 437 --d~~~l~~~~~d~~v~~w~~~-~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h-~~~ 510 (577)
T 2ymu_A 437 --DDQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSS 510 (577)
T ss_dssp --TSSEEEEEETTSEEEEEETT-S-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC-SSC
T ss_pred --CCCEEEEEcCCCEEEEEECC-C-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC-CCC
Confidence 56699999999999999975 3 467888899999999999999999999999999999995 68889999998 999
Q ss_pred EEEEEECCCCCEEEEeccCccC
Q 020454 304 IRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 304 v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
|++++|+|++++|++++.||.+
T Consensus 511 v~~l~~s~dg~~l~s~~~dg~v 532 (577)
T 2ymu_A 511 VRGVAFSPDGQTIASASDDKTV 532 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEE
T ss_pred EEEEEEcCCCCEEEEEECcCEE
Confidence 9999999999999999999975
No 30
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.7e-33 Score=233.25 Aligned_cols=268 Identities=10% Similarity=0.085 Sum_probs=204.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.|++|+.||.|+|||+.............+. .+...+.++.|. +++++|++|+.||.|++|+............
T Consensus 52 ~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~--~h~~~V~~~~~s--~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~- 126 (340)
T 4aow_A 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVIS--SDGQFALSGSWDGTLRLWDLTTGTTTRRFVG- 126 (340)
T ss_dssp TEEEEEETTSCEEEEEECCSSSCSEEEEEEEC--CCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEEC-
T ss_pred CEEEEEcCCCeEEEEECCCCCcccceeeEEEe--CCCCCEEEEEEC--CCCCEEEEEcccccceEEeecccceeeeecC-
Confidence 46889999999999999876222222222333 233445555554 5567999999999999999987766555442
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
+...+....+.+ .+..+++++.|+.+++|++.... ........+...+..+++++++
T Consensus 127 -------~~~~~~~~~~~~--------~~~~l~s~s~d~~~~~~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 127 -------HTKDVLSVAFSS--------DNRQIVSGSRDKTIKLWNTLGVC--------KYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp -------CSSCEEEEEECT--------TSSCEEEEETTSCEEEECTTSCE--------EEEECSSSCSSCEEEEEECSCS
T ss_pred -------CCCceeEEEEee--------cCccceeecCCCeEEEEEeCCCc--------eEEEEeccccCcccceEEccCC
Confidence 224455454433 56789999999999999976432 2222223446788999998765
Q ss_pred --CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454 175 --KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (326)
Q Consensus 175 --~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 252 (326)
.++++++.|+.|++||+++++.+..+..|. ..|++++|+| ++++|++++.|+.|++||+++. +++.
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~---------~~v~~~~~s~--~~~~l~s~s~Dg~i~iwd~~~~-~~~~ 251 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT---------GYLNTVTVSP--DGSLCASGGKDGQAMLWDLNEG-KHLY 251 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEECT--TSSEEEEEETTCEEEEEETTTT-EEEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCC---------CcEEEEEECC--CCCEEEEEeCCCeEEEEEeccC-ceee
Confidence 678999999999999999999888877654 5689999998 5669999999999999999976 5566
Q ss_pred EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc---------ceecceEEEEEECCCCCEEEEeccCc
Q 020454 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI---------GKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 253 ~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~---------~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
.+..+ ..+.+++|+|++. +++++.|+.|++||++++..+..+. +| ...|++++|+|++++|++||.||
T Consensus 252 ~~~~~-~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg 328 (340)
T 4aow_A 252 TLDGG-DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDN 328 (340)
T ss_dssp EEECS-SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTS
T ss_pred eecCC-ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCC
Confidence 66554 6899999999875 5566679999999999887776654 45 88999999999999999999999
Q ss_pred cC
Q 020454 324 AA 325 (326)
Q Consensus 324 ~~ 325 (326)
.+
T Consensus 329 ~v 330 (340)
T 4aow_A 329 LV 330 (340)
T ss_dssp CE
T ss_pred EE
Confidence 76
No 31
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.8e-33 Score=231.80 Aligned_cols=267 Identities=12% Similarity=0.089 Sum_probs=208.5
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++++ +|.|++|++..+ .... ....+....+...+..+.+. +++++|++++.||.|++||+.+++.......
T Consensus 64 ~~l~~~~-dg~i~iw~~~~~-~~~~-~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~- 137 (337)
T 1gxr_A 64 RHVYTGG-KGCVKVWDISHP-GNKS-PVSQLDCLNRDNYIRSCKLL--PDGCTLIVGGEASTLSIWDLAAPTPRIKAEL- 137 (337)
T ss_dssp SEEEEEC-BSEEEEEETTST-TCCS-CSEEEECSCTTSBEEEEEEC--TTSSEEEEEESSSEEEEEECCCC--EEEEEE-
T ss_pred cEEEEcC-CCeEEEEECCCC-Ccee-eeecccccCCCCcEEEEEEc--CCCCEEEEEcCCCcEEEEECCCCCcceeeec-
Confidence 3456666 999999999876 1111 22222222344555566654 4566899999999999999987763222221
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
..+...+.++.+.+ ++..+++++.+|.|++|+++... .+..+. .+...+.+++++|++
T Consensus 138 -----~~~~~~i~~~~~~~--------~~~~l~~~~~dg~v~~~d~~~~~--------~~~~~~-~~~~~i~~~~~~~~~ 195 (337)
T 1gxr_A 138 -----TSSAPACYALAISP--------DSKVCFSCCSDGNIAVWDLHNQT--------LVRQFQ-GHTDGASCIDISNDG 195 (337)
T ss_dssp -----ECSSSCEEEEEECT--------TSSEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECTTS
T ss_pred -----ccCCCceEEEEECC--------CCCEEEEEeCCCcEEEEeCCCCc--------eeeeee-cccCceEEEEECCCC
Confidence 14456788888755 56789999999999999987543 334443 256789999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
++|++++.|+.|++||+++++.+.... +...+.+++|+| +++++++++.++.|++||++.. . ...+
T Consensus 196 ~~l~~~~~dg~i~~~d~~~~~~~~~~~----------~~~~v~~~~~s~--~~~~l~~~~~~~~i~~~~~~~~-~-~~~~ 261 (337)
T 1gxr_A 196 TKLWTGGLDNTVRSWDLREGRQLQQHD----------FTSQIFSLGYCP--TGEWLAVGMESSNVEVLHVNKP-D-KYQL 261 (337)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEE----------CSSCEEEEEECT--TSSEEEEEETTSCEEEEETTSS-C-EEEE
T ss_pred CEEEEEecCCcEEEEECCCCceEeeec----------CCCceEEEEECC--CCCEEEEEcCCCcEEEEECCCC-C-eEEE
Confidence 999999999999999999988776643 224588999998 5669999999999999999976 3 4567
Q ss_pred eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..|...|.+++|+|++++|++++.||.|++||+++++.+.... | ...|.+++|+|++++|++++.||.+
T Consensus 262 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E-SSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C-SSCEEEEEECTTSCEEEEEETTSCE
T ss_pred cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-C-CCcEEEEEECCCCCEEEEecCCCeE
Confidence 7888999999999999999999999999999999998885544 5 8899999999999999999999975
No 32
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.9e-33 Score=236.04 Aligned_cols=240 Identities=14% Similarity=0.123 Sum_probs=196.3
Q ss_pred CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~ 129 (326)
+...+.++.|. +++++|++|+.||+|++||..+++.+..+. .+...|.++.+.+ ++..++++
T Consensus 54 H~~~v~~~~~s--~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~--------~~~~~v~~~~~s~--------~~~~l~s~ 115 (340)
T 1got_B 54 HLAKIYAMHWG--TDSRLLLSASQDGKLIIWDSYTTNKVHAIP--------LRSSWVMTCAYAP--------SGNYVACG 115 (340)
T ss_dssp CSSCEEEEEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEEE--------CSSSCEEEEEECT--------TSSEEEEE
T ss_pred CCCceEEEEEC--CCCCEEEEEeCCCcEEEEECCCCCcceEee--------cCCccEEEEEECC--------CCCEEEEE
Confidence 44455566654 556799999999999999998888766655 4456788888765 66799999
Q ss_pred ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG 209 (326)
Q Consensus 130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 209 (326)
+.|+.+++|++...... ....+.+. .+...|.++.|++++. +++++.|+.|++||+++++.+..+..|.
T Consensus 116 ~~d~~v~iw~~~~~~~~----~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~----- 184 (340)
T 1got_B 116 GLDNICSIYNLKTREGN----VRVSRELA-GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT----- 184 (340)
T ss_dssp ETTCEEEEEETTTCSBS----CEEEEEEE-CCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCS-----
T ss_pred eCCCeEEEEECccCCCc----ceeEEEec-CCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCC-----
Confidence 99999999998653210 11222222 4567899999998765 7889999999999999999888877654
Q ss_pred cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
..|.+++|+| +++++++++.|+.|++||++++ .++..+..|...|++++|+|++++|++|+.||.|++||+++
T Consensus 185 ----~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~ 257 (340)
T 1got_B 185 ----GDVMSLSLAP--DTRLFVSGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257 (340)
T ss_dssp ----SCEEEEEECT--TSSEEEEEETTSCEEEEETTTC-SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ----CceEEEEECC--CCCEEEEEeCCCcEEEEECCCC-eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 5688999998 5669999999999999999987 67888999999999999999999999999999999999999
Q ss_pred CeEEEEEcce-ecceEEEEEECCCCCEEEEeccCccC
Q 020454 290 GKLLGCFIGK-CSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 290 ~~~~~~~~~~-~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
++.+..+..+ +...|.+++|+|++++|++|+.||.+
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i 294 (340)
T 1got_B 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294 (340)
T ss_dssp TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeE
Confidence 9888777522 13579999999999999999999865
No 33
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-33 Score=234.79 Aligned_cols=271 Identities=13% Similarity=0.117 Sum_probs=217.3
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++++.+|.|++|++..+ +....+..+ ...+.++.|. +.+++|++++.||.|++||+.+++.+..+..
T Consensus 45 ~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~h--~~~v~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 114 (369)
T 3zwl_B 45 DLLFSCSKDSSASVWYSLNG-----ERLGTLDGH--TGTIWSIDVD--CFTKYCVTGSADYSIKLWDVSNGQCVATWKS- 114 (369)
T ss_dssp CEEEEEESSSCEEEEETTTC-----CEEEEECCC--SSCEEEEEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEEEC-
T ss_pred CEEEEEeCCCEEEEEeCCCc-----hhhhhhhhc--CCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEeec-
Confidence 56899999999999999877 454455433 3445555554 4566999999999999999998887766652
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC-----CcEEEEEcccccccccc---ccceEEEEE-ccCCCce
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-----GKASMRSIEVTKVSAES---SCSTVKSWN-VCASGTI 165 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~-----g~v~i~~~~~~~~~~~~---~~~~~~~~~-~~~~~~v 165 (326)
...+.++.+.+ ++..+++++.+ |.+.+|++......... ....+.... ......+
T Consensus 115 --------~~~v~~~~~~~--------~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 115 --------PVPVKRVEFSP--------CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp --------SSCEEEEEECT--------TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred --------CCCeEEEEEcc--------CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 25788888765 66789999988 99999998865421110 111122222 1222389
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeC
Q 020454 166 AFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244 (326)
Q Consensus 166 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~ 244 (326)
.+++|+|++++|++++.|+.|++||+++ .+.+..+..+. ..|.+++|+| ++++|++++.|+.|++||+
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE---------KSISDMQFSP--DLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS---------SCEEEEEECT--TSSEEEEEETTSEEEEEET
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC---------CceeEEEECC--CCCEEEEecCCceEEEEEC
Confidence 9999999999999999999999999998 67776666543 5688999998 5669999999999999999
Q ss_pred CCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC--------------cEEEEECCCCeEEEEEcceecceEEEEEEC
Q 020454 245 SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--------------DLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (326)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg--------------~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 310 (326)
++. +.+..+. +...+..++|+|+++++++++.++ .+++||+.+++.+..+.+| ...|++++|+
T Consensus 248 ~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s 324 (369)
T 3zwl_B 248 STL-QVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-FGPLNTVAIS 324 (369)
T ss_dssp TTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC-SSCEEEEEEC
T ss_pred CCC-ceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc-cCcEEEEEEC
Confidence 987 5566665 668899999999999999999988 8999999999999999998 9999999999
Q ss_pred CCCCEEEEeccCccC
Q 020454 311 PTLPIIASCGFLEAA 325 (326)
Q Consensus 311 p~~~~l~s~s~D~~~ 325 (326)
|++++|++++.||.+
T Consensus 325 ~~~~~l~s~~~dg~v 339 (369)
T 3zwl_B 325 PQGTSYASGGEDGFI 339 (369)
T ss_dssp TTSSEEEEEETTSEE
T ss_pred CCCCEEEEEcCCCeE
Confidence 999999999999975
No 34
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.5e-34 Score=245.98 Aligned_cols=272 Identities=12% Similarity=0.100 Sum_probs=208.1
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-++++++.+|.|++|++.++ +....+. .. . +..+. .....+++|++|+.||.|++||+.+++....+.
T Consensus 69 ~~l~~~~~d~~v~i~d~~~~-----~~~~~~~--~~-~-~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-- 136 (420)
T 3vl1_A 69 SHLYKARLDGHDFLFNTIIR-----DGSKMLK--RA-D-YTAVD-TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ-- 136 (420)
T ss_dssp TTEEEEEETTEEEEEECCSE-----ETTTTSC--SC-C-EEEEE-EECSSSCEEEEEETTSCEEEECTTSCEEEEETT--
T ss_pred CeEEEEEcCCcEEEEEeccc-----ceeeEEe--cC-C-ceEEE-EEecCCCEEEEEECCCCEEEEeCCCcceeeecc--
Confidence 45899999999999999876 2211111 11 1 22221 234556689999999999999998777655443
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.|.+.|.++.+.+ ++..+++++.||.|++|++.... .+..+. .+...|.+++|+|++
T Consensus 137 ------~h~~~v~~~~~~~--------~~~~l~s~s~d~~i~iwd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~ 193 (420)
T 3vl1_A 137 ------AHVSEITKLKFFP--------SGEALISSSQDMQLKIWSVKDGS--------NPRTLI-GHRATVTDIAIIDRG 193 (420)
T ss_dssp ------SSSSCEEEEEECT--------TSSEEEEEETTSEEEEEETTTCC--------CCEEEE-CCSSCEEEEEEETTT
T ss_pred ------cccCccEEEEECC--------CCCEEEEEeCCCeEEEEeCCCCc--------CceEEc-CCCCcEEEEEEcCCC
Confidence 5668899999866 56789999999999999987543 333443 357789999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC---------------cCCCCceeeeEEeecCCCcEEEEEeCCCeE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG---------------IFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v 239 (326)
++|++++.|+.|++||+++++.+..+..+...... ..+...+.+++|+| ++++|++++.||.|
T Consensus 194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i 271 (420)
T 3vl1_A 194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT--YGKYVIAGHVSGVI 271 (420)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC--TTEEEEEEETTSCE
T ss_pred CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC--CCCEEEEEcCCCeE
Confidence 99999999999999999999888777654321100 01123455666666 56799999999999
Q ss_pred EEEeCCCCCCceeEEe-ecCCceEEEEecCCCC-eEEEEcCCCcEEEEECCCCeE-EEEEcceecceEEEEEECCCCCEE
Q 020454 240 RLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPII 316 (326)
Q Consensus 240 ~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~-~l~~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l 316 (326)
++||+++. +.+..+. .|...|++++|+|++. +|++|+.||.|++||+++++. +..+.+|+...|.++.+ |++++|
T Consensus 272 ~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l 349 (420)
T 3vl1_A 272 TVHNVFSK-EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALF 349 (420)
T ss_dssp EEEETTTC-CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEE
T ss_pred EEEECCCC-ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEE
Confidence 99999987 4444543 4778999999999998 999999999999999998754 67777754888999966 567899
Q ss_pred EEeccCccC
Q 020454 317 ASCGFLEAA 325 (326)
Q Consensus 317 ~s~s~D~~~ 325 (326)
++++.||.+
T Consensus 350 ~s~~~d~~v 358 (420)
T 3vl1_A 350 VSSGFDTSI 358 (420)
T ss_dssp EEETTTEEE
T ss_pred EEecCCccE
Confidence 999999875
No 35
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.3e-33 Score=235.67 Aligned_cols=245 Identities=11% Similarity=0.099 Sum_probs=200.0
Q ss_pred CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~ 129 (326)
+...+.++.|. +++++|++|+.||+|++||..+++....+. .+...+.++.+.+ ++..++++
T Consensus 63 H~~~V~~~~~s--~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~--------~~~~~v~~~~~sp--------~g~~lasg 124 (354)
T 2pbi_B 63 HGNKVLCMDWC--KDKRRIVSSSQDGKVIVWDSFTTNKEHAVT--------MPCTWVMACAYAP--------SGCAIACG 124 (354)
T ss_dssp CSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEE--------CSSSCCCEEEECT--------TSSEEEEE
T ss_pred CCCeEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCCcceEEe--------cCCCCEEEEEECC--------CCCEEEEe
Confidence 44455566654 456799999999999999998887766555 3335788788765 67799999
Q ss_pred ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG 209 (326)
Q Consensus 130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 209 (326)
+.|+.+++|++........ ......+. .+...|.++.|+|+++.|++++.|++|++||+++++.+..+..|.
T Consensus 125 ~~d~~i~v~~~~~~~~~~~--~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~----- 196 (354)
T 2pbi_B 125 GLDNKCSVYPLTFDKNENM--AAKKKSVA-MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG----- 196 (354)
T ss_dssp STTSEEEEEECCCCTTCCS--GGGCEEEE-ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS-----
T ss_pred eCCCCEEEEEEeccccccc--cccceeee-ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC-----
Confidence 9999999999865321100 11222222 356789999999999999999999999999999999888877654
Q ss_pred cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
..|.++.|+|..++++|++++.||+|++||++++ +++..+..|...|++++|+|++++|++|+.|+.|++||+++
T Consensus 197 ----~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 197 ----ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp ----SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ----CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 4588999998766779999999999999999987 67888999999999999999999999999999999999999
Q ss_pred CeEEEEEcce-ecceEEEEEECCCCCEEEEeccCccC
Q 020454 290 GKLLGCFIGK-CSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 290 ~~~~~~~~~~-~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
++.+..+..+ +...+.+++|+|++++|++++.|+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i 308 (354)
T 2pbi_B 272 DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTI 308 (354)
T ss_dssp TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcE
Confidence 9888777632 13578999999999999999999875
No 36
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=233.09 Aligned_cols=268 Identities=13% Similarity=0.132 Sum_probs=206.0
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~ 95 (326)
.+++.+.|+.|+|||+.++ +....+..+.+...+.++.+. +.+++|++|+.||+|++|++++++.+..+.
T Consensus 37 ~~lAvg~D~tV~iWd~~tg-----~~~~~~~~~~~~~~V~~v~~~--~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~--- 106 (318)
T 4ggc_A 37 NVLAVALDNSVYLWSASSG-----DILQLLQMEQPGEYISSVAWI--KEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--- 106 (318)
T ss_dssp SEEEEEETTEEEEEETTTC-----CEEEEEECCSTTCCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEE---
T ss_pred CEEEEEeCCEEEEEECCCC-----CEEEEEEecCCCCeEEEEEEC--CCCCEEEEEECCCcEEEeecCCceeEEEec---
Confidence 3566667999999999987 555455444555566666664 456699999999999999999998877765
Q ss_pred CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC
Q 020454 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (326)
Q Consensus 96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (326)
.|...+..+.. ....+++++.++.+.+|+...... .+.... .+...+..+.++++++
T Consensus 107 -----~h~~~~~~~~~----------~~~~l~s~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~ 163 (318)
T 4ggc_A 107 -----SHSARVGSLSW----------NSYILSSGSRSGHIHHHDVRVAEH-------HVATLS-GHSQEVCGLRWAPDGR 163 (318)
T ss_dssp -----CCSSCEEEEEE----------ETTEEEEEETTSEEEEEETTSSSC-------EEEEEE-CCSSCEEEEEECTTSS
T ss_pred -----CccceEEEeec----------CCCEEEEEecCCceEeeecCCCce-------eEEEEc-CccCceEEEEEcCCCC
Confidence 44566665554 456899999999999998664331 233332 4567899999999999
Q ss_pred EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE--EEEeCCCeEEEEeCCCCCCceeE
Q 020454 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF--VAGTNDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 176 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l--~~~~~dg~v~iwd~~~~~~~~~~ 253 (326)
+|++++.|+.|++||+++++......... ..+...|..+.++|.. ...+ ++++.++.|++||.+.. . ...
T Consensus 164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~i~lwd~~~~-~-~~~ 235 (318)
T 4ggc_A 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTF-----TQHQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSG-A-CLS 235 (318)
T ss_dssp EEEEEETTSCEEEEESSCBTTBSCCSEEE-----CCCCSCEEEEEECTTS-TTEEEEEECTTTCEEEEEETTTC-C-EEE
T ss_pred EEEEEecCcceeEEECCCCcccccceeee-----cccCCceEEEEecCCC-CcEEEEEecCCCCEEEEEecccc-c-ccc
Confidence 99999999999999998765432211100 1123568888998853 3343 45678899999999876 3 334
Q ss_pred EeecCCceEEEEecCCCCeEEEE--cCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 254 FDFRETPIKAVAEEPDSFNIYIG--NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 254 ~~~~~~~i~~v~~s~~~~~l~~g--~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
...+...+..++|+|++..++++ +.|+.|++||+++++++.++.+| .+.|++++|+|++++|+|||.||.+
T Consensus 236 ~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg~~l~S~s~D~~v 308 (318)
T 4ggc_A 236 AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADETL 308 (318)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTTEE
T ss_pred cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCeE
Confidence 44566889999999999988754 47999999999999999999998 9999999999999999999999976
No 37
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.8e-33 Score=242.03 Aligned_cols=262 Identities=14% Similarity=0.202 Sum_probs=214.2
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++|+.||.|++||+.++ +....+.. +...+.++.+. +++|++|+.||+|++||+.+++.+..+.
T Consensus 130 ~~l~sg~~dg~i~vwd~~~~-----~~~~~~~~--h~~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~-- 196 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVTG-----KCLRTLVG--HTGGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHTLY-- 196 (445)
T ss_dssp TEEEEEETTSCEEEEETTTC-----CEEEECCC--CSSCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEEEC--
T ss_pred CEEEEEECCCcEEEEECCCC-----cEEEEEcC--CCCCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEEEC--
Confidence 57899999999999999877 45545543 34455556554 4489999999999999999888776665
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc---------------------ccccccce
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------------------SAESSCST 153 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~---------------------~~~~~~~~ 153 (326)
.+...|.++.+ +++.+++++.||.|++|++..... +++..++.
T Consensus 197 ------~h~~~v~~~~~----------~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 197 ------GHTSTVRCMHL----------HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM 260 (445)
T ss_dssp ------CCSSCEEEEEE----------ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred ------CCCCcEEEEEe----------cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCE
Confidence 55678888886 346899999999999999875332 34556788
Q ss_pred EEEEEccC----------CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454 154 VKSWNVCA----------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (326)
Q Consensus 154 ~~~~~~~~----------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 223 (326)
+++|+... ...|.++.+ +++++++|+.|+.|++||+++++.+..+..+. ..+.++.+.
T Consensus 261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~~- 328 (445)
T 2ovr_B 261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ---------SLTSGMELK- 328 (445)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCC---------SCEEEEEEE-
T ss_pred EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc---------ccEEEEEEe-
Confidence 99998653 345778888 78999999999999999999999888877654 346666664
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee---cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE----
Q 020454 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF---- 296 (326)
Q Consensus 224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~---- 296 (326)
++++++++.||.|++||++++ +++..+.. |...|++++|+ +++|++|+.||.|++||+++++.+..+
T Consensus 329 ---~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 402 (445)
T 2ovr_B 329 ---DNILVSGNADSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 402 (445)
T ss_dssp ---TTEEEEEETTSCEEEEETTTC-CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECT
T ss_pred ---CCEEEEEeCCCeEEEEECCCC-cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccc
Confidence 349999999999999999977 66777775 77899999995 679999999999999999999999888
Q ss_pred -cceecceEEEEEECCCCCEEEEeccCcc
Q 020454 297 -IGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 297 -~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
.+| .+.|++++|+|++.+|++|+.||.
T Consensus 403 ~~~~-~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 403 SGGS-GGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp TGGG-TCEEEEEEECSSEEEEEEECSSSS
T ss_pred cCCC-CceEEEEEecCCEEEEEEcccCCC
Confidence 355 889999999999999999999996
No 38
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=253.53 Aligned_cols=278 Identities=11% Similarity=-0.011 Sum_probs=192.7
Q ss_pred eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeC----CCCCeEEEEecCCcEEEEeccccceee--e
Q 020454 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDS----QNDPLLAVARKNGLTDILNPLNGDLRV--A 90 (326)
Q Consensus 17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~g~~dg~i~i~~~~~~~~~~--~ 90 (326)
+++++.||.|+||++.++ ............ +...+..+.|... ..+.+||+++.||+|++||+.+++... .
T Consensus 176 laS~s~D~tI~iWd~~~~-~~~~~~~~~l~~--~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTS-TLHCVKVQTIVH--SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp ------CEEEEEEEEETT-TCCEEEEEEEEE--CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred hccCCCCceEEEEEccCC-CCCceEEEEEEe--cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence 566789999999999876 111111112221 2233556666544 235689999999999999997664321 0
Q ss_pred ecccCC-CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE-
Q 020454 91 ISNAGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS- 168 (326)
Q Consensus 91 ~~~~~~-~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 168 (326)
+....+ .....+...|.++.+.+ ++.|++++.||.|++||++.... ....+. .+...|.++
T Consensus 253 ~~~~~p~~~l~~h~~~v~sv~~s~---------~~~lasgs~DgtV~lWD~~~~~~-------~~~~~~-~H~~~V~sv~ 315 (524)
T 2j04_B 253 KMCEKPSLTLSLADSLITTFDFLS---------PTTVVCGFKNGFVAEFDLTDPEV-------PSFYDQ-VHDSYILSVS 315 (524)
T ss_dssp ECCCSCSEEECCTTTCEEEEEESS---------SSEEEEEETTSEEEEEETTBCSS-------CSEEEE-CSSSCEEEEE
T ss_pred eeecCceEEEEcCCCCEEEEEecC---------CCeEEEEeCCCEEEEEECCCCCC-------ceEEee-cccccEEEEE
Confidence 000000 00124567899888643 35899999999999999875321 222233 356789999
Q ss_pred -EEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454 169 -KVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (326)
Q Consensus 169 -~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~ 246 (326)
.++|++ ++||+|+.|++|+|||+++++.+..+..+... ..|.+++|+| +++.+++++.|++|++||++.
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~-------~~v~~v~fsp--~~~~l~s~~~d~tv~lwd~~~ 386 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG-------SNLVPVVYCP--QIYSYIYSDGASSLRAVPSRA 386 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC-------CSCCCEEEET--TTTEEEEECSSSEEEEEETTC
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc-------CcccceEeCC--CcCeEEEeCCCCcEEEEECcc
Confidence 568887 89999999999999999987765554443211 2367899998 456899999999999999998
Q ss_pred CCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC-------------------------------------
Q 020454 247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT------------------------------------- 289 (326)
Q Consensus 247 ~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~------------------------------------- 289 (326)
. ..+..+..|...|++|+|+|++++|++|+.||+|++||+..
T Consensus 387 ~-~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~ 465 (524)
T 2j04_B 387 A-FAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYE 465 (524)
T ss_dssp T-TCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCC
T ss_pred c-ccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCce
Confidence 7 55678889999999999999999999999999999987532
Q ss_pred -------CeEEEEEcceecceEEEEEECCCCC---EEEEeccCccC
Q 020454 290 -------GKLLGCFIGKCSGSIRSIARHPTLP---IIASCGFLEAA 325 (326)
Q Consensus 290 -------~~~~~~~~~~~~~~v~~l~~~p~~~---~l~s~s~D~~~ 325 (326)
+..+..+.+| ...|.+++|+|+++ +||+|+.||.+
T Consensus 466 ~~~~~~~g~~~~~l~gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~v 510 (524)
T 2j04_B 466 VYPLTVNDVSKAKIDAH-GINITCTKWNETSAGGKCYAFSNSAGLL 510 (524)
T ss_dssp CCC-------------C-CCSCCCEEECCSTTTTTEEEEECTTSEE
T ss_pred ecccccCCcceeeecCC-CceEEEEECCCCCCccHHHHhhccCceE
Confidence 1122334566 88999999999965 99999999976
No 39
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.5e-33 Score=236.91 Aligned_cols=271 Identities=10% Similarity=0.041 Sum_probs=210.3
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++++.+|.|++|++.++ ..+....+.. +...+..+.+.. ++++|++++.||.|++||+.+++....+...
T Consensus 21 ~~l~~~~~d~~v~i~~~~~~---~~~~~~~~~~--h~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 93 (372)
T 1k8k_C 21 TQIAICPNNHEVHIYEKSGN---KWVQVHELKE--HNGQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL 93 (372)
T ss_dssp SEEEEECSSSEEEEEEEETT---EEEEEEEEEC--CSSCEEEEEEET--TTTEEEEEETTSCEEEEEEETTEEEEEEECC
T ss_pred CEEEEEeCCCEEEEEeCCCC---cEEeeeeecC--CCCcccEEEEeC--CCCEEEEEcCCCeEEEEECCCCeeeeeEEee
Confidence 46888999999999999876 1114444443 334555566654 5668999999999999999888765554432
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.+...+.++.+.+ ++..+++++.+|.+++|+++.... ..........+...|.+++|+|++
T Consensus 94 ------~~~~~v~~~~~~~--------~~~~l~~~~~d~~v~i~d~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 94 ------RINRAARCVRWAP--------NEKKFAVGSGSRVISICYFEQEND-----WWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp ------CCSSCEEEEEECT--------TSSEEEEEETTSSEEEEEEETTTT-----EEEEEEECTTCCSCEEEEEECTTS
T ss_pred ------cCCCceeEEEECC--------CCCEEEEEeCCCEEEEEEecCCCc-----ceeeeeeecccCCCeeEEEEcCCC
Confidence 4557899888765 567899999999999999876431 112333334457789999999999
Q ss_pred CEEEEecCCCeEEEEECC------------------CceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC
Q 020454 175 KFSLFGGKGVEVNVWDLD------------------KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d 236 (326)
++|++++.|+.|++||++ .++.+..+..+ ...|++++|+| ++++|++++.|
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~--~~~~l~~~~~d 223 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS---------CGWVHGVCFSA--NGSRVAWVSHD 223 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC---------SSCEEEEEECS--SSSEEEEEETT
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC---------CCeEEEEEECC--CCCEEEEEeCC
Confidence 999999999999999964 34444444432 35689999998 55699999999
Q ss_pred CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC--CeE----------------------
Q 020454 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT--GKL---------------------- 292 (326)
Q Consensus 237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~--~~~---------------------- 292 (326)
+.|++||+++. +++..+..|..+|.+++|+|++++|++| .|+.|++|++++ ++.
T Consensus 224 ~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (372)
T 1k8k_C 224 STVCLADADKK-MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER 301 (372)
T ss_dssp TEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHH
T ss_pred CEEEEEECCCC-ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhh
Confidence 99999999987 6788899999999999999999988888 899999999988 421
Q ss_pred ----------E------EEE-cceecceEEEEEEC-CCC---CEEEEeccCccC
Q 020454 293 ----------L------GCF-IGKCSGSIRSIARH-PTL---PIIASCGFLEAA 325 (326)
Q Consensus 293 ----------~------~~~-~~~~~~~v~~l~~~-p~~---~~l~s~s~D~~~ 325 (326)
. ..+ .+| ..+|++++|+ +++ .+|+|||.||.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i 354 (372)
T 1k8k_C 302 FQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGM 354 (372)
T ss_dssp HHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred hhhcccccccccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCce
Confidence 0 223 377 9999999977 566 899999999975
No 40
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=237.67 Aligned_cols=275 Identities=14% Similarity=0.133 Sum_probs=203.4
Q ss_pred eeeeecC---cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCC-CCCeEEEEecCCcEEEEeccccc-eeee
Q 020454 16 RALTFDS---LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGD-LRVA 90 (326)
Q Consensus 16 ~l~~~~~---~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~i~~~~~~~-~~~~ 90 (326)
.+++++. +|.|++|++.++ +...... ..+...+.++.|.... ++.+|++|+.||.|++||+.+++ .+..
T Consensus 33 l~~~~s~~~~d~~v~iw~~~~~-----~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 106 (357)
T 3i2n_A 33 FVTMGNFARGTGVIQLYEIQHG-----DLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS 106 (357)
T ss_dssp EEEEEC--CCCEEEEEEEECSS-----SEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE
T ss_pred EEEecCccCCCcEEEEEeCCCC-----cccceee-ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE
Confidence 3456665 999999999976 2221111 1234455566665442 25689999999999999998777 4444
Q ss_pred ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccC---CCceEE
Q 020454 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA---SGTIAF 167 (326)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~ 167 (326)
+. .+...|.++.+.+.- .-++++..+++++.||.|++|++..... .+..+.... ...+.+
T Consensus 107 ~~--------~~~~~v~~~~~~~~~--~~s~~~~~l~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 107 VK--------GHKEIINAIDGIGGL--GIGEGAPEIVTGSRDGTVKVWDPRQKDD-------PVANMEPVQGENKRDCWT 169 (357)
T ss_dssp EC--------CCSSCEEEEEEESGG--GCC-CCCEEEEEETTSCEEEECTTSCSS-------CSEEECCCTTSCCCCEEE
T ss_pred EE--------ecccceEEEeecccc--ccCCCccEEEEEeCCCeEEEEeCCCCCC-------cceeccccCCCCCCceEE
Confidence 44 556788888543200 0012567899999999999999875431 233333221 337888
Q ss_pred EE----EcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC-CCcEEEEEeCCCeEEEE
Q 020454 168 SK----VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLY 242 (326)
Q Consensus 168 ~~----~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~~l~~~~~dg~v~iw 242 (326)
+. ++|++++|++++.|+.|++||+++++..... . +...|.+++|+|.. ++.+|++++.||.|++|
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~---------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET-N---------IKNGVCSLEFDRKDISMNKLVATSLEGKFHVF 239 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE-E---------CSSCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec-C---------CCCceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence 88 7889999999999999999999998875442 1 22568999999832 34599999999999999
Q ss_pred eCCCCCCceeEEe-----ecCCceEEEEecCCCC-eEEEEcCCCcEEEEECCCC-------------------eEEEEEc
Q 020454 243 DTSAQRRPVMSFD-----FRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG-------------------KLLGCFI 297 (326)
Q Consensus 243 d~~~~~~~~~~~~-----~~~~~i~~v~~s~~~~-~l~~g~~dg~v~iwd~~~~-------------------~~~~~~~ 297 (326)
|++.. +++..+. .|...|++++|+|+++ +|++|+.||.|++||++++ +.+..+.
T Consensus 240 d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (357)
T 3i2n_A 240 DMRTQ-HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT 318 (357)
T ss_dssp EEEEE-ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE
T ss_pred eCcCC-CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc
Confidence 99865 3344443 7899999999999998 8999999999999999854 4677788
Q ss_pred ceecceEEEEEECCCCCEEE-EeccCccC
Q 020454 298 GKCSGSIRSIARHPTLPIIA-SCGFLEAA 325 (326)
Q Consensus 298 ~~~~~~v~~l~~~p~~~~l~-s~s~D~~~ 325 (326)
+| .++|++++|+|++++|+ +++.||.+
T Consensus 319 ~~-~~~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 319 LS-TQPISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp CC-SSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred cC-CCCeeEEEEcCCCCeEEEEecCCCcE
Confidence 88 99999999999999998 89999875
No 41
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.1e-33 Score=229.51 Aligned_cols=243 Identities=12% Similarity=0.089 Sum_probs=184.1
Q ss_pred CCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc--ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE
Q 020454 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~ 127 (326)
+...+.++.|. +.+++|++|+.||+|+|||+..+ +.+..+. .|.++|.++.+.++. .+..|+
T Consensus 8 h~~~V~~~~~s--~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~--------gH~~~V~~v~~s~~~------~g~~l~ 71 (297)
T 2pm7_B 8 HNEMIHDAVMD--YYGKRMATCSSDKTIKIFEVEGETHKLIDTLT--------GHEGPVWRVDWAHPK------FGTILA 71 (297)
T ss_dssp CSSCEEEEEEC--TTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC--------CCSSCEEEEEECCGG------GCSEEE
T ss_pred CcCceEEEEEC--CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc--------cccCCeEEEEecCCC------cCCEEE
Confidence 34445555554 45669999999999999999643 3333433 677899999874421 246899
Q ss_pred EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCcee--eeeecCC
Q 020454 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPP 203 (326)
Q Consensus 128 ~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~ 203 (326)
+++.||.|++|+++.... ..+..+. .+...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+..|
T Consensus 72 s~s~D~~v~iWd~~~~~~------~~~~~~~-~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGRW------SQIAVHA-VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp EEETTTEEEEEEBSSSCB------CCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred EEcCCCEEEEEEcCCCce------EEEEEee-cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence 999999999999864321 1222222 35678999999997 78999999999999999987532 2223333
Q ss_pred CCCCCCcCCCCceeeeEEeecC-----------CCcEEEEEeCCCeEEEEeCCCCCC---ceeEEeecCCceEEEEecCC
Q 020454 204 PKNSLGIFTPTWFTSAAFLSID-----------DHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPD 269 (326)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~p~~-----------~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~i~~v~~s~~ 269 (326)
...|.+++|+|.. ++++|++++.|++|++||++.... ....+..|...|.+++|+|+
T Consensus 145 ---------~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~ 215 (297)
T 2pm7_B 145 ---------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215 (297)
T ss_dssp ---------SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred ---------cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCC
Confidence 3568899999852 246899999999999999986532 34567789999999999998
Q ss_pred C---CeEEEEcCCCcEEEEECCCCe---EEEEE--cceecceEEEEEECCCCCEEEEeccCccC
Q 020454 270 S---FNIYIGNGSGDLASVDIRTGK---LLGCF--IGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 270 ~---~~l~~g~~dg~v~iwd~~~~~---~~~~~--~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+ .+|++|+.|++|++||++++. ....+ ..| ...|.+++|+|++++||+++.||.+
T Consensus 216 ~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v 278 (297)
T 2pm7_B 216 VLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKV 278 (297)
T ss_dssp CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEETTSCE
T ss_pred CCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccC-CCcEEEEEECCCCCEEEEEcCCCcE
Confidence 4 899999999999999998743 12223 455 8899999999999999999999975
No 42
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.4e-33 Score=241.57 Aligned_cols=256 Identities=13% Similarity=0.213 Sum_probs=210.4
Q ss_pred CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (326)
Q Consensus 14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~ 93 (326)
.-.+++|+.+|.|++||+.++ +....+.. +...+.++.+ .+++|++|+.||+|++||+.+++.+..+.
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~--h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~- 210 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTL-----ECKRILTG--HTGSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLI- 210 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSC-----CEEEEECC--CSSCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEEC-
T ss_pred CCEEEEEeCCCeEEEEeCCCC-----eEEEEEcC--CCCcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEEEc-
Confidence 357899999999999999876 44444443 3445566666 35589999999999999999988776665
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (326)
.+...|.++.+ .++.+++++.||.|++|++...... ........+...|.++++ +
T Consensus 211 -------~h~~~v~~l~~----------~~~~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~~v~~~~~--~ 265 (435)
T 1p22_A 211 -------HHCEAVLHLRF----------NNGMMVTCSKDRSIAVWDMASPTDI------TLRRVLVGHRAAVNVVDF--D 265 (435)
T ss_dssp -------CCCSCEEEEEC----------CTTEEEEEETTSCEEEEECSSSSCC------EEEEEECCCSSCEEEEEE--E
T ss_pred -------CCCCcEEEEEE----------cCCEEEEeeCCCcEEEEeCCCCCCc------eeeeEecCCCCcEEEEEe--C
Confidence 45678998886 4469999999999999998754321 111222345678999999 6
Q ss_pred CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 253 (326)
+++|++|+.|+.|++||+++++.+..+..+. ..|.++.|. ++++++++.||.|++||++++ +++..
T Consensus 266 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~----~~~l~~g~~dg~i~iwd~~~~-~~~~~ 331 (435)
T 1p22_A 266 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---------RGIACLQYR----DRLVVSGSSDNTIRLWDIECG-ACLRV 331 (435)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCS---------SCEEEEEEE----TTEEEEEETTSCEEEEETTTC-CEEEE
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEEEEcCCC---------CcEEEEEeC----CCEEEEEeCCCeEEEEECCCC-CEEEE
Confidence 7999999999999999999999888877654 457788884 349999999999999999987 67889
Q ss_pred EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe---------EEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~---------~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
+..|...|.+++| ++.+|++|+.||.|++||+++++ ++..+.+| .+.|.+++| ++.+|+++|.||.
T Consensus 332 ~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 332 LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-SGRVFRLQF--DEFQIVSSSHDDT 406 (435)
T ss_dssp ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-SSCCCCEEE--CSSCEEECCSSSE
T ss_pred EeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC-CCCeEEEEe--CCCEEEEEeCCCE
Confidence 9999999999999 78899999999999999998765 78889998 999999999 6788999999997
Q ss_pred C
Q 020454 325 A 325 (326)
Q Consensus 325 ~ 325 (326)
+
T Consensus 407 i 407 (435)
T 1p22_A 407 I 407 (435)
T ss_dssp E
T ss_pred E
Confidence 5
No 43
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-33 Score=234.27 Aligned_cols=240 Identities=11% Similarity=0.063 Sum_probs=187.3
Q ss_pred eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (326)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~ 132 (326)
.+..++| ++++++|++|+.||+|+|||+.+++........ ..|...|.++.+.+ ++..|++++.|
T Consensus 18 ~v~~l~~--sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~-----~~h~~~v~~~~~sp--------~g~~l~s~s~D 82 (345)
T 3fm0_A 18 RCWFLAW--NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-----EGHQRTVRKVAWSP--------CGNYLASASFD 82 (345)
T ss_dssp CEEEEEE--CTTSSCEEEEETTSCEEEEEEETTEEEEEEEEC-----SSCSSCEEEEEECT--------TSSEEEEEETT
T ss_pred cEEEEEE--CCCCCEEEEEcCCCeEEEEEcCCCcceeeeeec-----cccCCcEEEEEECC--------CCCEEEEEECC
Confidence 3444444 456679999999999999999877643322211 25678899999765 66799999999
Q ss_pred CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCcee---eeeecCCCCCCCC
Q 020454 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLG 209 (326)
Q Consensus 133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~ 209 (326)
+.+++|+++.... ..+..+. .+...|.+++|+|++++|++|+.|+.|++||++++.. +..+..|.
T Consensus 83 ~~v~iw~~~~~~~------~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~----- 150 (345)
T 3fm0_A 83 ATTCIWKKNQDDF------ECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT----- 150 (345)
T ss_dssp SCEEEEEECCC-E------EEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC-----
T ss_pred CcEEEEEccCCCe------EEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC-----
Confidence 9999999764321 1223332 3567899999999999999999999999999987542 33444433
Q ss_pred cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
..|.+++|+| ++++|++++.|++|++||.+... .+...+..|...|++++|+|++++|++|+.||.|++||..
T Consensus 151 ----~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 151 ----QDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp ----SCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred ----CCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 5689999998 45699999999999999988652 2346778899999999999999999999999999999964
Q ss_pred CC---------------eEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 289 TG---------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 289 ~~---------------~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.. +++..+.+++...|.+++|+|++..|++++.|+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i 276 (345)
T 3fm0_A 225 LPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI 276 (345)
T ss_dssp CTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCE
T ss_pred cCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeE
Confidence 21 34555666338899999999999999999999875
No 44
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.9e-34 Score=241.88 Aligned_cols=251 Identities=16% Similarity=0.132 Sum_probs=195.8
Q ss_pred CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~ 129 (326)
+...+.++.|. +++++|++|+.||+|+|||..+++....+. .+...|.++.+.+ ++..++++
T Consensus 65 H~~~V~~~~~s--p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--------~h~~~v~~~~~s~--------~g~~las~ 126 (380)
T 3iz6_a 65 HSGKVYSLDWT--PEKNWIVSASQDGRLIVWNALTSQKTHAIK--------LHCPWVMECAFAP--------NGQSVACG 126 (380)
T ss_dssp CSSCEEEEEEC--TTSSCEEEEETTSEEEEEETTTTEEEEEEE--------CCCTTCCCCEECT--------TSSEEEEC
T ss_pred cccEEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCccceEEe--------cCCCCEEEEEECC--------CCCEEEEe
Confidence 44455556554 456689999999999999998888766665 4556788888755 66799999
Q ss_pred ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (326)
Q Consensus 130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 208 (326)
+.|+.+++|++.......+. ....+.+ ..+...+.++.|+|++ ..|++|+.|++|++||+++++.+..+.....
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~-~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~--- 201 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGN-MPVSRVL-TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP--- 201 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCS-STTCCBC-CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS---
T ss_pred eCCCcEEEEECCCCccccCC-ccceeec-cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC---
Confidence 99999999998653211100 0011111 2345678889999874 6799999999999999999888766532211
Q ss_pred CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
..+...|.++.|.|. ++++|++|+.|++|++||++....++..+..|...|++++|+|++++|++|+.||+|++||++
T Consensus 202 -~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~ 279 (380)
T 3iz6_a 202 -SGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279 (380)
T ss_dssp -SSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT
T ss_pred -CCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC
Confidence 123467899999874 456999999999999999986556788899999999999999999999999999999999999
Q ss_pred CCeEEEEEccee------cceEEEEEECCCCCEEEEeccCccC
Q 020454 289 TGKLLGCFIGKC------SGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 289 ~~~~~~~~~~~~------~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++.+..+..+. ...|++++|+|++++|++|+.||.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 322 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC 322 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE
Confidence 999988887541 1248999999999999999999875
No 45
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-33 Score=238.60 Aligned_cols=267 Identities=16% Similarity=0.150 Sum_probs=185.7
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec------CCcEEEEeccccceee
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK------NGLTDILNPLNGDLRV 89 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~------dg~i~i~~~~~~~~~~ 89 (326)
.++.++.+...+.|++... .. ..+...+.++.|. +++++|++|+. ||.|++|+..++....
T Consensus 18 ~~~~~~g~~~~~~w~~p~~-----~p------~~H~~~V~~v~fS--pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVT-----AP------ACMEVQIGAVRYR--RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp ---------------------------------CCCSEEEEEEEC--SSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred eEEecCCCccccccCCCCC-----Cc------ccccCCEEEEEEC--CCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 3445555566677776543 11 1244556666664 55679999998 7889999987665433
Q ss_pred eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEE
Q 020454 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 169 (326)
.+... ...+...|.++++.+ ++.+++++.||.|++||+....... ..+.-...+...|.+++
T Consensus 85 ~~~~~----~~~~~~~V~~~~~s~---------d~~~l~~s~dg~v~lWd~~~~~~~~-----~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 85 SLCTA----GVQTEAGVTDVAWVS---------EKGILVASDSGAVELWEILEKESLL-----VNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp GGCSE----EEECSSCEEEEEEET---------TTEEEEEETTSCEEEC--------C-----CCCEEECCCSSCEEEEE
T ss_pred eEecc----cCCCCCCEEEEEEcC---------CCCEEEEECCCEEEEeeccccceeE-----EEeeccCCCCCCEEEEE
Confidence 32210 014556799898754 4578899999999999987643211 11122234577899999
Q ss_pred EcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (326)
Q Consensus 170 ~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~ 249 (326)
|+|++++|++|+.|+.|++||+++++.+..+..|. ..|++++|+|.. ..++++++.|++|++||+++. +
T Consensus 147 ~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~---------~~v~~v~~s~~~-~~~~~s~~~dg~v~~wd~~~~-~ 215 (357)
T 4g56_B 147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS---------SEVNCVAACPGK-DTIFLSCGEDGRILLWDTRKP-K 215 (357)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEECTTC-SSCEEEEETTSCEEECCTTSS-S
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC---------CCEEEEEEccCC-CceeeeeccCCceEEEECCCC-c
Confidence 99999999999999999999999999988887654 568899999853 348899999999999999977 4
Q ss_pred ceeEEe--ecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC-CEEEEeccCccC
Q 020454 250 PVMSFD--FRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGFLEAA 325 (326)
Q Consensus 250 ~~~~~~--~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~s~s~D~~~ 325 (326)
+...+. .+...+++++|+|+ +.+|++|+.|+.|++||+++++++..+.+| ...|++++|+|++ ++|++||.|+.+
T Consensus 216 ~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasgs~D~~i 294 (357)
T 4g56_B 216 PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH-SQNITGLAYSYHSSPFLASISEDCTV 294 (357)
T ss_dssp CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC-SSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc-ceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence 444433 46678999999998 567889999999999999999999999998 9999999999987 689999999975
No 46
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.7e-32 Score=228.16 Aligned_cols=239 Identities=13% Similarity=0.166 Sum_probs=188.7
Q ss_pred CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee--eeecccCCCCCCCCCCCeeeeecccccccccCCCCceE
Q 020454 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (326)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l 126 (326)
.+...+.++.+... ..++|++|+.||+|++|++...... ..+..+ ..|...|.++.+.+ ++..+
T Consensus 15 gH~~~V~~l~~~~~-~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~s~--------dg~~l 80 (319)
T 3frx_A 15 GHNGWVTSLATSAG-QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-----KGHSHIVQDCTLTA--------DGAYA 80 (319)
T ss_dssp CCSSCEEEEEECSS-CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-----ECCSSCEEEEEECT--------TSSEE
T ss_pred cccceEEEEEccCC-CccEEEEecCCccEEEecCCCCCccccccceEE-----eCCcccEEEEEECC--------CCCEE
Confidence 34444555555422 2358999999999999998643221 111111 15668899888765 66789
Q ss_pred EEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCC
Q 020454 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (326)
Q Consensus 127 ~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~ 206 (326)
++++.|+.|++||+.... .++.+. .+...|.+++++|++++|++|+.|++|++||++. +.+..+..|.
T Consensus 81 ~s~s~D~~v~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~-- 148 (319)
T 3frx_A 81 LSASWDKTLRLWDVATGE--------TYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHN-- 148 (319)
T ss_dssp EEEETTSEEEEEETTTTE--------EEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCS--
T ss_pred EEEeCCCEEEEEECCCCC--------eeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccC--
Confidence 999999999999987543 344444 4577899999999999999999999999999974 4444544443
Q ss_pred CCCcCCCCceeeeEEeecC----CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcE
Q 020454 207 SLGIFTPTWFTSAAFLSID----DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (326)
Q Consensus 207 ~~~~~~~~~v~~~~~~p~~----~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v 282 (326)
.+|.++.|.|.. ++..+++++.|+.|++||++.. +....+..|...|++++|+|++++|++|+.||.|
T Consensus 149 -------~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i 220 (319)
T 3frx_A 149 -------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220 (319)
T ss_dssp -------SCEEEEEECCC------CCEEEEEETTSCEEEEETTTT-EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEE
T ss_pred -------CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 568899998842 3458999999999999999976 5677888999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
++||+++++.+..+.. ...|.+++|+|++.+|++++.++
T Consensus 221 ~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~la~~~~~~ 259 (319)
T 3frx_A 221 MLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLAAATATG 259 (319)
T ss_dssp EEEETTTTEEEEEEEC--CSCEEEEEECSSSSEEEEEETTE
T ss_pred EEEECCCCcEEEEecC--CCcEEEEEEcCCCCEEEEEcCCC
Confidence 9999999999988884 56899999999999999887664
No 47
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-32 Score=224.66 Aligned_cols=259 Identities=13% Similarity=0.096 Sum_probs=203.2
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++++.||.|++|++..+ +....+..+ ...+.++.+.. ++++|++|+.||.|++|++...........+
T Consensus 30 ~~l~s~~~dg~v~vw~~~~~-----~~~~~~~~~--~~~v~~~~~~~--~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~ 100 (313)
T 3odt_A 30 SKVASVSRDGTVRLWSKDDQ-----WLGTVVYTG--QGFLNSVCYDS--EKELLLFGGKDTMINGVPLFATSGEDPLYTL 100 (313)
T ss_dssp TEEEEEETTSEEEEEEESSS-----EEEEEEEEC--SSCEEEEEEET--TTTEEEEEETTSCEEEEETTCCTTSCC-CEE
T ss_pred CEEEEEEcCCcEEEEECCCC-----EEEEEeecC--CccEEEEEECC--CCCEEEEecCCCeEEEEEeeecCCCCcccch
Confidence 46999999999999999876 443344333 34455555543 5668999999999999998754322222221
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-C
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S 173 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 173 (326)
..+...+.++.+ +++.+++++.||.+++|+.. ..+..+. .+...+.++.++| +
T Consensus 101 -----~~~~~~i~~~~~----------~~~~l~~~~~d~~i~~~d~~----------~~~~~~~-~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 101 -----IGHQGNVCSLSF----------QDGVVISGSWDKTAKVWKEG----------SLVYNLQ-AHNASVWDAKVVSFS 154 (313)
T ss_dssp -----CCCSSCEEEEEE----------ETTEEEEEETTSEEEEEETT----------EEEEEEE-CCSSCEEEEEEEETT
T ss_pred -----hhcccCEEEEEe----------cCCEEEEEeCCCCEEEEcCC----------cEEEecc-cCCCceeEEEEccCC
Confidence 256678888887 34689999999999999921 1333333 3567899999988 8
Q ss_pred CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 253 (326)
++++++++.|+.|++||.. +....+... +...+.+++|+| ++ .+++++.|+.|++||+++. +++..
T Consensus 155 ~~~l~~~~~d~~i~i~d~~--~~~~~~~~~--------~~~~i~~~~~~~--~~-~~~~~~~dg~i~i~d~~~~-~~~~~ 220 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQND--KVIKTFSGI--------HNDVVRHLAVVD--DG-HFISCSNDGLIKLVDMHTG-DVLRT 220 (313)
T ss_dssp TTEEEEEETTSCEEEEETT--EEEEEECSS--------CSSCEEEEEEEE--TT-EEEEEETTSEEEEEETTTC-CEEEE
T ss_pred CCEEEEEECCCCEEEEecC--ceEEEEecc--------CcccEEEEEEcC--CC-eEEEccCCCeEEEEECCch-hhhhh
Confidence 8999999999999999944 333333331 235689999998 44 4999999999999999987 67888
Q ss_pred EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+..|...|++++|+|++ .|++++.||.|++||+++++++..+..| ..+|.+++|+|+++ +++++.||.+
T Consensus 221 ~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 221 YEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP-AISIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp EECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS-SSCEEEEEECTTSC-EEEEETTSCE
T ss_pred hhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc-CceEEEEEEccCCC-EEEEeCCCcE
Confidence 98999999999999999 6899999999999999999999999988 89999999999998 5678889875
No 48
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.7e-32 Score=233.94 Aligned_cols=266 Identities=13% Similarity=0.095 Sum_probs=201.1
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++|+.||.|++|++.++ +....+....+...+.++.|... .+.+|++++.||.|++||+.+ +....+...
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~ 159 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQ-----NKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIRGATTLRDFSG-SVIQVFAKT 159 (383)
T ss_dssp TEEEEEEBTSCEEEEETTST-----TCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETTTEEEEEETTS-CEEEEEECC
T ss_pred CEEEEEcCCCeEEEEeCCCc-----ccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCCCEEEEEECCC-CceEEEecc
Confidence 47999999999999999876 33333333345556666666431 345899999999999999975 333444321
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
..+...+.++.+.+ ++..+++++.||.|++|++... .+..+. .+...|.+++|+|++
T Consensus 160 -----~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~i~d~~~~---------~~~~~~-~h~~~v~~~~~~~~~ 216 (383)
T 3ei3_B 160 -----DSWDYWYCCVDVSV--------SRQMLATGDSTGRLLLLGLDGH---------EIFKEK-LHKAKVTHAEFNPRC 216 (383)
T ss_dssp -----CCSSCCEEEEEEET--------TTTEEEEEETTSEEEEEETTSC---------EEEEEE-CSSSCEEEEEECSSC
T ss_pred -----CCCCCCeEEEEECC--------CCCEEEEECCCCCEEEEECCCC---------EEEEec-cCCCcEEEEEECCCC
Confidence 13446788888765 6679999999999999997421 344444 356789999999999
Q ss_pred C-EEEEecCCCeEEEEECCC----ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454 175 K-FSLFGGKGVEVNVWDLDK----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (326)
Q Consensus 175 ~-~l~sg~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~ 249 (326)
+ +|++|+.|+.|++||+++ +..+... . +...|++++|+|. ++++|++++.|+.|++||+++. .
T Consensus 217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~---------~~~~v~~~~~s~~-~~~~l~~~~~d~~i~iwd~~~~-~ 284 (383)
T 3ei3_B 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-P---------HEKPVNAAYFNPT-DSTKLLTTDQRNEIRVYSSYDW-S 284 (383)
T ss_dssp TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-E---------CSSCEEEEEECTT-TSCEEEEEESSSEEEEEETTBT-T
T ss_pred CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-c---------CCCceEEEEEcCC-CCCEEEEEcCCCcEEEEECCCC-c
Confidence 8 999999999999999997 4444433 2 2357999999983 4559999999999999999977 3
Q ss_pred ceeEEeecC-----------------CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce-ecceEEEEEECC
Q 020454 250 PVMSFDFRE-----------------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSIARHP 311 (326)
Q Consensus 250 ~~~~~~~~~-----------------~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-~~~~v~~l~~~p 311 (326)
....+..|. ..+..++|+|++++ +|+.||.|++||+++++++..+.+| +.+.+..++|+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~ 362 (383)
T 3ei3_B 285 KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP 362 (383)
T ss_dssp SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT
T ss_pred cccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec
Confidence 445554332 34455677777776 7789999999999999999999873 167788889999
Q ss_pred CCCEEEEeccCccC
Q 020454 312 TLPIIASCGFLEAA 325 (326)
Q Consensus 312 ~~~~l~s~s~D~~~ 325 (326)
++++|++++ ||.+
T Consensus 363 ~g~~l~s~s-d~~i 375 (383)
T 3ei3_B 363 TGDVLASGM-GFNI 375 (383)
T ss_dssp TSSEEEEEE-TTEE
T ss_pred CccEEEEec-CCcE
Confidence 999999997 8764
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=242.18 Aligned_cols=275 Identities=11% Similarity=0.056 Sum_probs=207.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc------ee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------LR 88 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~------~~ 88 (326)
-.|++++.+|.|++|++.....+. +....+..+.. .+.++.|..+ .+.+|++++.||.|++||+.+++ ..
T Consensus 80 ~~l~~~~~dg~v~vw~~~~~~~~~-~~~~~~~~h~~--~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 155 (416)
T 2pm9_A 80 KIIAGALDNGSLELYSTNEANNAI-NSMARFSNHSS--SVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTP 155 (416)
T ss_dssp SCEEEEESSSCEEEECCSSTTSCC-CEEEECCCSSS--CCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred CeEEEEccCCeEEEeecccccccc-cchhhccCCcc--ceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccc
Confidence 468889999999999998731121 23334443333 3444555332 25589999999999999998776 22
Q ss_pred eeecccCCCCCCCCCCCeeeeecccccccccCCC-CceEEEEecCCcEEEEEccccccccccccceEEEEEccC-----C
Q 020454 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR-SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-----S 162 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~-~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~-----~ 162 (326)
..+.. ...+...+.++.+.+ + ...+++++.||.|++|+++... .+..+.... .
T Consensus 156 ~~~~~-----~~~~~~~v~~~~~~~--------~~~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~~~~~ 214 (416)
T 2pm9_A 156 LTPGQ-----SMSSVDEVISLAWNQ--------SLAHVFASAGSSNFASIWDLKAKK--------EVIHLSYTSPNSGIK 214 (416)
T ss_dssp BCCCC-----SCCSSCCCCEEEECS--------SCTTEEEEESSSSCEEEEETTTTE--------EEEEECCCCCSSCCC
T ss_pred ccccc-----ccCCCCCeeEEEeCC--------CCCcEEEEEcCCCCEEEEECCCCC--------cceEEeccccccccC
Confidence 22211 125567888888755 3 4689999999999999987543 344444332 5
Q ss_pred CceEEEEEcCCC-CEEEEecCCC---eEEEEECCCc-eeeeeec-CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC
Q 020454 163 GTIAFSKVDISE-KFSLFGGKGV---EVNVWDLDKC-EKIWTAK-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (326)
Q Consensus 163 ~~v~~~~~~~~~-~~l~sg~~d~---~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d 236 (326)
..|.+++|+|++ .+|++++.|+ .|++||++++ +++..+. .| ...|++++|+|. ++++|++++.|
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~---------~~~v~~~~~s~~-~~~~l~s~~~d 284 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH---------QKGILSLDWCHQ-DEHLLLSSGRD 284 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC---------SSCEEEEEECSS-CSSCEEEEESS
T ss_pred CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc---------cCceeEEEeCCC-CCCeEEEEeCC
Confidence 789999999997 7999999998 9999999986 4444443 33 356899999984 45699999999
Q ss_pred CeEEEEeCCCCCCceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeEEEEEc------------------
Q 020454 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFI------------------ 297 (326)
Q Consensus 237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~~~~~~------------------ 297 (326)
+.|++||+++. +++..+..|...|++++|+|++ .+|++++.||.|++||+.+++......
T Consensus 285 g~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (416)
T 2pm9_A 285 NTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVS 363 (416)
T ss_dssp SEEEEECSSSC-CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------
T ss_pred CCEEEeeCCCC-ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccc
Confidence 99999999987 6788999999999999999998 899999999999999998765322111
Q ss_pred -----------------ceecceEEEEEECCCCCEEEEeccCccCC
Q 020454 298 -----------------GKCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 298 -----------------~~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
.| ..++.+++|+|++++|++++.||.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~la~~~~d~~v~ 408 (416)
T 2pm9_A 364 REESKEKPSVFHLQAPTWY-GEPSPAAHWAFGGKLVQITPDGKGVS 408 (416)
T ss_dssp ---CCSCCCSSCCCCCSTT-CCCSCCCEEETTTEEECBCTTSSCBC
T ss_pred ccccccccccccccCCccc-cCCccceEEeeCCeEEEEeCCCCeEE
Confidence 03 66788999999999999999999863
No 50
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.4e-32 Score=238.84 Aligned_cols=268 Identities=13% Similarity=0.179 Sum_probs=213.0
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++|+.||.|++||+.++ +....+.. +...+.++.+.+. + +|++|+.||+|++||+.+++.+..+.
T Consensus 133 ~~l~sgs~dg~i~vwd~~~~-----~~~~~~~~--h~~~V~~l~~~~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~-- 200 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSINK-----KFLLQLSG--HDGGVWALKYAHG--G-ILVSGSTDRTVRVWDIKKGCCTHVFE-- 200 (464)
T ss_dssp TEEEEEETTSCEEEEETTTT-----EEEEEECC--CSSCEEEEEECST--T-EEEEEETTSCEEEEETTTTEEEEEEC--
T ss_pred CEEEEEcCCCcEEEEECCCC-----cEEEEEeC--CCcCEEEEEEcCC--C-EEEEEeCCCCEEEEECCCCcEEEEEC--
Confidence 57999999999999999877 55555553 4445566666432 2 79999999999999999888766655
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc------------------------------
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK------------------------------ 144 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~------------------------------ 144 (326)
.+...|.++.+.+.. +...+++++.||.|++|++....
T Consensus 201 ------~h~~~v~~l~~~~~~------~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 201 ------GHNSTVRCLDIVEYK------NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ------CCSSCEEEEEEEESS------SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ------CCCCccEEEEEecCC------CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 556889888865311 45789999999999999987532
Q ss_pred --------------cccccccceEEEEEccC----------CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee
Q 020454 145 --------------VSAESSCSTVKSWNVCA----------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (326)
Q Consensus 145 --------------~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 200 (326)
.+++..++.+++|+... ...|.++.++|++++|++|+.|+.|++||+++++.+..+
T Consensus 269 ~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 13445688899998753 346889999999999999999999999999999998888
Q ss_pred cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC
Q 020454 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (326)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg 280 (326)
..|. ..|.++.|++ .+|++++.||.|++||+++. ...... .+...+..++|+|+++++++|+ ||
T Consensus 349 ~~h~---------~~v~~~~~~~----~~l~s~s~dg~v~vwd~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg 412 (464)
T 3v7d_B 349 QGHT---------ALVGLLRLSD----KFLVSAAADGSIRGWDANDY-SRKFSY-HHTNLSAITTFYVSDNILVSGS-EN 412 (464)
T ss_dssp CCCS---------SCEEEEEECS----SEEEEEETTSEEEEEETTTC-CEEEEE-ECTTCCCEEEEEECSSEEEEEE-TT
T ss_pred eCCC---------CcEEEEEEcC----CEEEEEeCCCcEEEEECCCC-ceeeee-cCCCCccEEEEEeCCCEEEEec-CC
Confidence 7654 5688888863 49999999999999999976 333333 3566788889999999999988 89
Q ss_pred cEEEEECCCCeEEEE-EcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 281 DLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 281 ~v~iwd~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
.|++||+++++++.. +..| .+.|.+++|+ ...++++++.||.
T Consensus 413 ~i~iwd~~~g~~~~~~~~~~-~~~v~~v~~~-~~~l~~~~~~~g~ 455 (464)
T 3v7d_B 413 QFNIYNLRSGKLVHANILKD-ADQIWSVNFK-GKTLVAAVEKDGQ 455 (464)
T ss_dssp EEEEEETTTCCEEESCTTTT-CSEEEEEEEE-TTEEEEEEEETTE
T ss_pred eEEEEECCCCcEEehhhccC-CCcEEEEEec-CCEEEEEEEeCCe
Confidence 999999999999886 4566 9999999997 3445666666653
No 51
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-32 Score=229.38 Aligned_cols=242 Identities=10% Similarity=0.079 Sum_probs=179.9
Q ss_pred CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc--eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (326)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~ 128 (326)
...+.++.+... +|++|+.||+|++||+..+. ....+.. ..|.+.|.++.+.+ ++..|++
T Consensus 14 ~~~v~~~~~s~~----~las~~~D~~i~lw~~~~~~~~~~~~~~~------~~h~~~v~~v~~sp--------~~~~las 75 (330)
T 2hes_X 14 KEKIWSFDFSQG----ILATGSTDRKIKLVSVKYDDFTLIDVLDE------TAHKKAIRSVAWRP--------HTSLLAA 75 (330)
T ss_dssp SSCEEEEEEETT----EEEEEESSSCEEEEECSSSCCEEEEEECT------TCCCSCEEEEEECT--------TSSEEEE
T ss_pred CCceeeeccCCC----EEEEEcCCCEEEEEEecCCCeEEEEEEec------CCccCCEEEEEECC--------CCCEEEE
Confidence 344555555432 89999999999999997653 2233321 13668899999765 5678999
Q ss_pred EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCc----eeeeeecCCC
Q 020454 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC----EKIWTAKPPP 204 (326)
Q Consensus 129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~----~~~~~~~~~~ 204 (326)
++.|+.|++|++....... .....+..+. .+...|.+++|+|++++|++|+.|++|++||++.. +.+..+..|.
T Consensus 76 ~s~D~~v~iw~~~~~~~~~-~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~ 153 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRT-FEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHS 153 (330)
T ss_dssp EETTSCEEEEEC--------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS
T ss_pred EeCCCcEEEEEcccCcCcc-ccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC
Confidence 9999999999985321100 0011222332 45678999999999999999999999999999532 3444555543
Q ss_pred CCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-CceeEEeecCCceEEEEecCC--CCeEEEEcCCCc
Q 020454 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPD--SFNIYIGNGSGD 281 (326)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~--~~~l~~g~~dg~ 281 (326)
..|.+++|+| ++.+|++++.|++|++||.+... +++..+..|...|.+++|+|+ +.+|++|+.|++
T Consensus 154 ---------~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~ 222 (330)
T 2hes_X 154 ---------QDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222 (330)
T ss_dssp ---------SCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred ---------CceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence 5699999998 45699999999999999987542 356788889999999999998 778999999999
Q ss_pred EEEEECCCC--------eEEEEEcc-eecceEEEEEECCCCCEEEEeccCccC
Q 020454 282 LASVDIRTG--------KLLGCFIG-KCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 282 v~iwd~~~~--------~~~~~~~~-~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
|++||++.+ .....+.+ | ...|.+++|++++ +|+++|.||.+
T Consensus 223 v~iw~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s~~~-~l~s~~~dg~v 273 (330)
T 2hes_X 223 VRVWKYMGDDEDDQQEWVCEAILPDVH-KRQVYNVAWGFNG-LIASVGADGVL 273 (330)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECCSCC-SSCEEEEEECTTS-CEEEEETTSCE
T ss_pred EEEEEecCCCccccceeEEeeeccccc-ccceEEEEEcCCC-EEEEEeCCCEE
Confidence 999999764 34555555 6 8999999999765 89999999975
No 52
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=239.53 Aligned_cols=289 Identities=13% Similarity=0.092 Sum_probs=202.3
Q ss_pred eeeeeecCcccEEEEEecCCcC------CCcceeeeccCCCCC----------ceEEEEEeeeCCCCCeEEEEecCCcEE
Q 020454 15 LRALTFDSLGLIKVIEARGEHG------GVPKVVERWGDPHSS----------NCVLAASIDDSQNDPLLAVARKNGLTD 78 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~------~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~g~~dg~i~ 78 (326)
-.|++|+.+|.|+||++..+.. +..++...+..+... ..+.++.|....+..+|++++.||+|+
T Consensus 41 ~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~ 120 (447)
T 3dw8_B 41 ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIK 120 (447)
T ss_dssp SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEE
T ss_pred CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEE
Confidence 5789999999999999987611 111233344433211 445566666554436899999999999
Q ss_pred EEeccccceeeeecccCCCC--------------------------------CCCCCCCeeeeecccccccccCCCCceE
Q 020454 79 ILNPLNGDLRVAISNAGDSG--------------------------------AQPEDDGIVGLHLFKRQREESSSRSRTL 126 (326)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~i~~l~~~~~~~~~~~~~~~~l 126 (326)
+|++.+++............ ...|...|.++.+.+ ++..+
T Consensus 121 iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~l 192 (447)
T 3dw8_B 121 LWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS--------DYETY 192 (447)
T ss_dssp EEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT--------TSSEE
T ss_pred EEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC--------CCCEE
Confidence 99997654321100000000 125667888888755 55678
Q ss_pred EEEecCCcEEEEEccccccccccccceEEEEE------ccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCcee---
Q 020454 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWN------VCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK--- 196 (326)
Q Consensus 127 ~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~--- 196 (326)
+++ .||.|++|+++.... .+.++. ..+...|.+++|+|++ ++|++|+.|+.|++||+++++.
T Consensus 193 ~s~-~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 193 LSA-DDLRINLWHLEITDR-------SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp EEE-CSSEEEEEETTEEEE-------EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred EEe-CCCeEEEEECCCCCc-------eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 887 899999999874221 233321 1346679999999998 9999999999999999998775
Q ss_pred -eeeecCCCCCCC---CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCc------------
Q 020454 197 -IWTAKPPPKNSL---GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP------------ 260 (326)
Q Consensus 197 -~~~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------------ 260 (326)
+..+..+..... ...+...|++++|+| ++++|++++. +.|++||++...+++..+..|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSH--SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECT--TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECC--CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 455554432100 000113699999998 5679999998 999999999734677888777532
Q ss_pred ---eEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce--------------------------------ecceEE
Q 020454 261 ---IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--------------------------------CSGSIR 305 (326)
Q Consensus 261 ---i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~--------------------------------~~~~v~ 305 (326)
+..++|+|++++|++|+.||.|++||+.+++.+. +.++ ....|.
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred cccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 3348999999999999999999999999987753 2221 135688
Q ss_pred EEEECCCCCEEEEeccCc
Q 020454 306 SIARHPTLPIIASCGFLE 323 (326)
Q Consensus 306 ~l~~~p~~~~l~s~s~D~ 323 (326)
.++|+|++++||+++.|+
T Consensus 421 ~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN 438 (447)
T ss_dssp EEEECSSSSEEEEECSSC
T ss_pred EEEECCCCCEEEEEecce
Confidence 999999999999999876
No 53
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.5e-33 Score=233.74 Aligned_cols=228 Identities=9% Similarity=-0.002 Sum_probs=166.6
Q ss_pred EEecCCcEEEEeccccce-eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE--ecCCcEEEEEccccccc
Q 020454 70 VARKNGLTDILNPLNGDL-RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC--TTKGKASMRSIEVTKVS 146 (326)
Q Consensus 70 ~g~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~--~~~g~v~i~~~~~~~~~ 146 (326)
.++.|+++++|++...+. +..............+..+..+++.+ ++..++++ +.|+.|++||+....
T Consensus 99 s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp--------Dg~~la~as~~~d~~i~iwd~~~~~-- 168 (365)
T 4h5i_A 99 QGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR--------EGTVAAIASSKVPAIMRIIDPSDLT-- 168 (365)
T ss_dssp HTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT--------TSSCEEEEESCSSCEEEEEETTTTE--
T ss_pred EecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC--------CCCEEEEEECCCCCEEEEeECCCCc--
Confidence 345678899999865432 12211111111123345566677644 55566544 468999999976533
Q ss_pred cccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (326)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 226 (326)
.+.. +.+...|.+++|+|++++|++++.+ .+++|+..+++.+...... .+...|.+++|+| +
T Consensus 169 ------~~~~--~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~-------~~~~~v~~v~fsp--d 230 (365)
T 4h5i_A 169 ------EKFE--IETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDF-------DKNWSLSKINFIA--D 230 (365)
T ss_dssp ------EEEE--EECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCC-------CTTEEEEEEEEEE--T
T ss_pred ------EEEE--eCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecC-------CCCCCEEEEEEcC--C
Confidence 2222 3456789999999999999998855 5677777766654432221 1235689999999 5
Q ss_pred CcEEEEEeCCC----eEEEEeCCCCCC---ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE-cc
Q 020454 227 HRKFVAGTNDH----QVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-IG 298 (326)
Q Consensus 227 ~~~l~~~~~dg----~v~iwd~~~~~~---~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~-~~ 298 (326)
+.++++++.|+ .+++||+..... ....+..|...|++++|+|+|++|++|+.|+.|+|||+++++++..+ .+
T Consensus 231 g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g 310 (365)
T 4h5i_A 231 DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA 310 (365)
T ss_dssp TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS
T ss_pred CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc
Confidence 67899998887 688899875422 13456678889999999999999999999999999999999999886 67
Q ss_pred eecceEEEEEECCCCCEEEEeccCccCC
Q 020454 299 KCSGSIRSIARHPTLPIIASCGFLEAAS 326 (326)
Q Consensus 299 ~~~~~v~~l~~~p~~~~l~s~s~D~~~~ 326 (326)
| ..+|++|+|+|++++|||||.|++++
T Consensus 311 H-~~~V~~v~fSpdg~~laS~S~D~tvr 337 (365)
T 4h5i_A 311 H-SFAITEVTISPDSTYVASVSAANTIH 337 (365)
T ss_dssp S-SSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred c-cCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 8 99999999999999999999999863
No 54
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-33 Score=242.22 Aligned_cols=280 Identities=12% Similarity=0.107 Sum_probs=205.4
Q ss_pred eeeeeecCcccEEEEEecCCcCCC-cceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc---ccceeee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGV-PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL---NGDLRVA 90 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~---~~~~~~~ 90 (326)
-.+++|+.||.|+|||+.....+. .+....+. +...+.++.+. +.+++|++|+.||+|++||++ +++....
T Consensus 77 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~---h~~~v~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 151 (437)
T 3gre_A 77 PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD---CSSTVTQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQESEVKF 151 (437)
T ss_dssp CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE---CSSCEEEEEEC--TTSSEEEEEETTSEEEEEEEEEEEETTEEEE
T ss_pred CEEEEecCCceEEEeECcccccCcccceeeecc---CCCCEEEEEEe--CCCCEEEEEeCCCEEEEEEeccccCCceeec
Confidence 579999999999999997621111 11122222 34445566665 456689999999999999995 4443332
Q ss_pred ecc-----cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc-CCCc
Q 020454 91 ISN-----AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGT 164 (326)
Q Consensus 91 ~~~-----~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 164 (326)
... +...+ ..+...+.++.+... +++..+++++.||.|++||+.... .+..+... +...
T Consensus 152 ~~~~~i~~~~~~~-~~~~~~~~~~~~~~~------~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~h~~~ 216 (437)
T 3gre_A 152 LNCECIRKINLKN-FGKNEYAVRMRAFVN------EEKSLLVALTNLSRVIIFDIRTLE--------RLQIIENSPRHGA 216 (437)
T ss_dssp EEEEEEEEEEGGG-GSSCCCEEEEEEEEC------SSCEEEEEEETTSEEEEEETTTCC--------EEEEEECCGGGCC
T ss_pred cccceeEEEEccC-cccccCceEEEEEEc------CCCCEEEEEeCCCeEEEEeCCCCe--------eeEEEccCCCCCc
Confidence 221 00000 003345555553321 146789999999999999987643 45555542 5679
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec--CCCcEEEEEeCCCeEEEE
Q 020454 165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI--DDHRKFVAGTNDHQVRLY 242 (326)
Q Consensus 165 v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~~l~~~~~dg~v~iw 242 (326)
|.+++|+|++++|++|+.|+.|++||+++++.+..+.. .+...|++++|+|. .++.+|++++.||.|++|
T Consensus 217 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 217 VSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--------GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--------TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--------CCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence 99999999999999999999999999999888776542 12246889977764 356799999999999999
Q ss_pred eCCCCCCceeEEee--------------------------cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454 243 DTSAQRRPVMSFDF--------------------------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF 296 (326)
Q Consensus 243 d~~~~~~~~~~~~~--------------------------~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~ 296 (326)
|++++ +.+..+.. |...|++++|+ ++++|++|+.||.|++||+++++.+..+
T Consensus 289 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 289 NFVKG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp ETTTT-EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred EcCCC-cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 99976 44555543 44568888998 7789999999999999999998877766
Q ss_pred cc-------------------------------------eecceEEEEEECCC--CCEEEEeccCccC
Q 020454 297 IG-------------------------------------KCSGSIRSIARHPT--LPIIASCGFLEAA 325 (326)
Q Consensus 297 ~~-------------------------------------~~~~~v~~l~~~p~--~~~l~s~s~D~~~ 325 (326)
.+ | ...|++++|+++ +.+|++|+.||.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~i~~~~~~~~~~l~s~~~dG~I 433 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH-HDIINSISTCEVDETPLLVACDNSGLI 433 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC--------------CCCEEEEEEEESSSSEEEEEEETTSCE
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCccccc-ccceeeEeeeccCCceEEEEEcCCceE
Confidence 65 5 899999999987 7899999999976
No 55
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-31 Score=221.55 Aligned_cols=237 Identities=17% Similarity=0.184 Sum_probs=193.1
Q ss_pred CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (326)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~ 128 (326)
.+...+.++.+. +.+++|++|+.||.|++|+..+++....+. .+...|.++.+.+ ++..+++
T Consensus 21 gh~~~v~~~~~s--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------~h~~~v~~~~~~~--------~~~~l~s 82 (312)
T 4ery_A 21 GHTKAVSSVKFS--PNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSS--------DSNLLVS 82 (312)
T ss_dssp CCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECT--------TSSEEEE
T ss_pred ccCCcEEEEEEC--CCCCEEEEeeCCCeEEEEeCCCcccchhhc--------cCCCceEEEEEcC--------CCCEEEE
Confidence 344555566654 456699999999999999998888766654 5567899898766 5679999
Q ss_pred EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (326)
Q Consensus 129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 208 (326)
++.||.|++|+++... .+..+. .+...|.++.|+|++++|++|+.|+.|++||+++++.+..+..|.
T Consensus 83 ~~~d~~i~vwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---- 149 (312)
T 4ery_A 83 ASDDKTLKIWDVSSGK--------CLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS---- 149 (312)
T ss_dssp EETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCS----
T ss_pred ECCCCEEEEEECCCCc--------EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCC----
Confidence 9999999999987543 344444 346789999999999999999999999999999998887776543
Q ss_pred CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (326)
Q Consensus 209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~ 287 (326)
..|.+++|+| ++++|++++.|+.|++||+++. +.+..+. .+...+..++|+|++++|++++.||.|++||+
T Consensus 150 -----~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 150 -----DPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp -----SCEEEEEECT--TSSEEEEEETTSCEEEEETTTC-CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred -----CcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC-ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 5688999998 5669999999999999999977 4455543 45678999999999999999999999999999
Q ss_pred CCCeEEEEEcceecceEEE---EEECCCCCEEEEeccCccC
Q 020454 288 RTGKLLGCFIGKCSGSIRS---IARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 288 ~~~~~~~~~~~~~~~~v~~---l~~~p~~~~l~s~s~D~~~ 325 (326)
++++.+..+.+| ...+.. ....+++.+|++|+.||.+
T Consensus 222 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~i 261 (312)
T 4ery_A 222 SKGKCLKTYTGH-KNEKYCIFANFSVTGGKWIVSGSEDNLV 261 (312)
T ss_dssp TTTEEEEEECSS-CCSSSCCCEEEECSSSCEEEECCTTSCE
T ss_pred CCCcEEEEEEec-CCceEEEEEEEEeCCCcEEEEECCCCEE
Confidence 999999999887 554332 2334678899999999975
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-31 Score=231.56 Aligned_cols=265 Identities=12% Similarity=0.065 Sum_probs=204.5
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++++.+|.|++|++..+ +....+. .+...+.++.|. +.+++|++|+.||.|++||+.+++.+..+.
T Consensus 110 ~~l~~~~~dg~i~iwd~~~~-----~~~~~~~--~h~~~v~~~~~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-- 178 (420)
T 3vl1_A 110 RRFILGTTEGDIKVLDSNFN-----LQREIDQ--AHVSEITKLKFF--PSGEALISSSQDMQLKIWSVKDGSNPRTLI-- 178 (420)
T ss_dssp CEEEEEETTSCEEEECTTSC-----EEEEETT--SSSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCCCEEEE--
T ss_pred CEEEEEECCCCEEEEeCCCc-----ceeeecc--cccCccEEEEEC--CCCCEEEEEeCCCeEEEEeCCCCcCceEEc--
Confidence 57999999999999999876 4444443 334455556554 456699999999999999999888776665
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc--------------
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-------------- 160 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~-------------- 160 (326)
.|...|.++.+.+ ++..+++++.||.|++||+.... .+..+...
T Consensus 179 ------~h~~~v~~~~~~~--------~~~~l~s~~~d~~v~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~~~ 236 (420)
T 3vl1_A 179 ------GHRATVTDIAIID--------RGRNVLSASLDGTIRLWECGTGT--------TIHTFNRKENPHDGVNSIALFV 236 (420)
T ss_dssp ------CCSSCEEEEEEET--------TTTEEEEEETTSCEEEEETTTTE--------EEEEECBTTBTTCCEEEEEEEE
T ss_pred ------CCCCcEEEEEEcC--------CCCEEEEEcCCCcEEEeECCCCc--------eeEEeecCCCCCCCccEEEEec
Confidence 5668899999765 56789999999999999987543 22222211
Q ss_pred ---------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc-EE
Q 020454 161 ---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KF 230 (326)
Q Consensus 161 ---------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-~l 230 (326)
+...+.+++|+|++++|++|+.|+.|++||+++++.+...... +...|++++|+|. +. +|
T Consensus 237 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~v~~~~~~~~--~~~~l 306 (420)
T 3vl1_A 237 GTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK--------FTCSCNSLTVDGN--NANYI 306 (420)
T ss_dssp CCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT--------TSSCEEEEEECSS--CTTEE
T ss_pred CCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc--------cCCCceeEEEeCC--CCCEE
Confidence 1245666677899999999999999999999998877665432 2356899999984 44 99
Q ss_pred EEEeCCCeEEEEeCCCCCCceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC---------eEEEEEccee
Q 020454 231 VAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG---------KLLGCFIGKC 300 (326)
Q Consensus 231 ~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~---------~~~~~~~~~~ 300 (326)
++++.||.|++||+++...++..+.. +...++++.+ +++++|++++.||.|++||+... .....+.+|
T Consensus 307 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~- 384 (420)
T 3vl1_A 307 YAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSN- 384 (420)
T ss_dssp EEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCS-
T ss_pred EEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccC-
Confidence 99999999999999987666777776 6678888755 57889999999999999998863 122345566
Q ss_pred cceEEEEEECCCCC---EEEEeccCcc
Q 020454 301 SGSIRSIARHPTLP---IIASCGFLEA 324 (326)
Q Consensus 301 ~~~v~~l~~~p~~~---~l~s~s~D~~ 324 (326)
.+.|.+++|+|+++ .|+++|.+|.
T Consensus 385 ~~~v~~~~~s~~~~~~g~l~a~g~~g~ 411 (420)
T 3vl1_A 385 DDAVSQFCYVSDDESNGEVLEVGKNNF 411 (420)
T ss_dssp SCCCCEEEEECCSSSSCEEEEEETTTE
T ss_pred CcceEEEEEccCCCCcceEEEEcCCce
Confidence 88999999999998 5666666664
No 57
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.8e-33 Score=229.87 Aligned_cols=243 Identities=10% Similarity=0.066 Sum_probs=182.8
Q ss_pred CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce--eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE
Q 020454 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~ 127 (326)
+...+.++.|.. .+++|++|+.|++|+|||+.+++. +..+. .|.++|.++.+.++. .+..|+
T Consensus 12 H~~~V~~v~~s~--~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~--------gH~~~V~~v~~~~~~------~~~~l~ 75 (316)
T 3bg1_A 12 HEDMIHDAQMDY--YGTRLATCSSDRSVKIFDVRNGGQILIADLR--------GHEGPVWQVAWAHPM------YGNILA 75 (316)
T ss_dssp --CCEEEEEECG--GGCEEEEEETTTEEEEEEEETTEEEEEEEEE--------CCSSCEEEEEECCGG------GSSCEE
T ss_pred ccCeEEEeeEcC--CCCEEEEEeCCCeEEEEEecCCCcEEEEEEc--------CCCccEEEEEeCCCC------CCCEEE
Confidence 444555666643 456899999999999999977653 23333 667899999875421 256899
Q ss_pred EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCcee---eeeecC
Q 020454 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK---IWTAKP 202 (326)
Q Consensus 128 ~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~ 202 (326)
+++.|+.|++|+++.... ..+..+. .+...|.+++|+|+ +.+|++|+.|+.|++||++.+.. ......
T Consensus 76 s~s~D~~v~iWd~~~~~~------~~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~ 148 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTW------EKSHEHA-GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA 148 (316)
T ss_dssp EEETTSCEEEECCSSSCC------CEEEEEC-CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred EEECCCEEEEEECCCCcc------eEEEEcc-CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence 999999999999764320 1222222 35678999999998 78999999999999999986532 122222
Q ss_pred CCCCCCCcCCCCceeeeEEeecC---------------CCcEEEEEeCCCeEEEEeCCCCC--CceeEEeecCCceEEEE
Q 020454 203 PPKNSLGIFTPTWFTSAAFLSID---------------DHRKFVAGTNDHQVRLYDTSAQR--RPVMSFDFRETPIKAVA 265 (326)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~p~~---------------~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~i~~v~ 265 (326)
+...|.+++|+|.. .+++|++++.|++|++||++... .++..+..|...|.+++
T Consensus 149 ---------h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~ 219 (316)
T 3bg1_A 149 ---------HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA 219 (316)
T ss_dssp ---------SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE
T ss_pred ---------ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE
Confidence 23457788888742 13589999999999999987542 24566778999999999
Q ss_pred ecCCC----CeEEEEcCCCcEEEEECCCC---e-EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 266 EEPDS----FNIYIGNGSGDLASVDIRTG---K-LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 266 ~s~~~----~~l~~g~~dg~v~iwd~~~~---~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
|+|++ ++|++|+.||+|++||+++. + ....+..| .+.|.+++|+|++++||+++.||.+
T Consensus 220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~las~~~D~~v 286 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANILAVSGGDNKV 286 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCCEEEEESSSCE
T ss_pred ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCEEEEEcCCCeE
Confidence 99986 78999999999999999862 1 22345566 8899999999999999999999975
No 58
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.2e-32 Score=236.12 Aligned_cols=271 Identities=13% Similarity=0.090 Sum_probs=190.6
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..|++|+.||.|+|||+..+ .. . ....+. .+...+.++.|.+ .++.+|++|+.||+|++||++++.. ..+...
T Consensus 133 ~~lasGs~dg~i~lWd~~~~-~~-~-~~~~~~--gH~~~V~~l~f~p-~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~ 205 (435)
T 4e54_B 133 STVAVGSKGGDIMLWNFGIK-DK-P-TFIKGI--GAGGSITGLKFNP-LNTNQFYASSMEGTTRLQDFKGNIL-RVFASS 205 (435)
T ss_dssp TCEEEEETTSCEEEECSSCC-SC-C-EEECCC--SSSCCCCEEEECS-SCTTEEEEECSSSCEEEEETTSCEE-EEEECC
T ss_pred CEEEEEeCCCEEEEEECCCC-Cc-e-eEEEcc--CCCCCEEEEEEeC-CCCCEEEEEeCCCEEEEeeccCCce-eEEecc
Confidence 45889999999999999865 11 1 112222 3344455555542 2345899999999999999976554 333221
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
......+.++.+.+ ++..+++++.||.|++|+++... +..+. .+...|.+++|+|++
T Consensus 206 -----~~~~~~~~~~~~~~--------~~~~l~~g~~dg~i~~wd~~~~~---------~~~~~-~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 206 -----DTINIWFCSLDVSA--------SSRMVVTGDNVGNVILLNMDGKE---------LWNLR-MHKKKVTHVALNPCC 262 (435)
T ss_dssp -----SSCSCCCCCEEEET--------TTTEEEEECSSSBEEEEESSSCB---------CCCSB-CCSSCEEEEEECTTC
T ss_pred -----CCCCccEEEEEECC--------CCCEEEEEeCCCcEeeeccCcce---------eEEEe-cccceEEeeeecCCC
Confidence 12234566666544 56789999999999999976432 11111 246789999999987
Q ss_pred -CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454 175 -KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 175 -~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 253 (326)
.+|++|+.|+.|++||+++.+....+.. ...|...|++++|+| ++++|++++.|+.|++||++++ .....
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~------~~~h~~~v~~~~~sp--dg~~l~s~~~D~~i~iwd~~~~-~~~~~ 333 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVRGKASFLY------SLPHRHPVNAACFSP--DGARLLTTDQKSEIRVYSASQW-DCPLG 333 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCCSSSCCSB------CCBCSSCEEECCBCT--TSSEEEEEESSSCEEEEESSSS-SSEEE
T ss_pred ceEEEEecCcceeeEEecccccccceEEE------eeeccccccceeECC--CCCeeEEEcCCCEEEEEECCCC-ccceE
Confidence 4788999999999999987654333211 112446799999998 5679999999999999999977 33444
Q ss_pred EeecCC------ceEEEEecCCCCeEEEEc------------CCCcEEEEECCCCeEEEEEcceecceEEEE-EECCCCC
Q 020454 254 FDFRET------PIKAVAEEPDSFNIYIGN------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSI-ARHPTLP 314 (326)
Q Consensus 254 ~~~~~~------~i~~v~~s~~~~~l~~g~------------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l-~~~p~~~ 314 (326)
+..|.. .+....|+|++.+++++. .++.|++||..+++++..+..++...|.++ +|+|+++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~ 413 (435)
T 4e54_B 334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD 413 (435)
T ss_dssp ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSS
T ss_pred EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCC
Confidence 443322 233446777777666654 345799999999999988764448889988 6999999
Q ss_pred EEEEeccCccC
Q 020454 315 IIASCGFLEAA 325 (326)
Q Consensus 315 ~l~s~s~D~~~ 325 (326)
+|++|+ |+.+
T Consensus 414 ~lasg~-d~~i 423 (435)
T 4e54_B 414 TLASAM-GYHI 423 (435)
T ss_dssp CEEEEC-SSEE
T ss_pred EEEEEc-CCcE
Confidence 999887 6543
No 59
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.5e-31 Score=224.26 Aligned_cols=271 Identities=14% Similarity=0.092 Sum_probs=203.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCC-eEEEEecCCcEEEEec-cccceeeeec
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNP-LNGDLRVAIS 92 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~i~~~-~~~~~~~~~~ 92 (326)
-.+++++.+|.|++|++..+ .....+.... .+...+.++++.. .++ +|++|+.||.|++||+ .+++. ..+.
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~-~~~~~~~~~~---~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~ 96 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQ-AKNVDLLQSL---RYKHPLLCCNFID--NTDLQIYVGTVQGEILKVDLIGSPSF-QALT 96 (342)
T ss_dssp TEEEEEETTSEEEEEEEETT-TTEEEEEEEE---ECSSCEEEEEEEE--SSSEEEEEEETTSCEEEECSSSSSSE-EECB
T ss_pred CEEEEEcCCCeEEEEEeCCC-Cccccceeee---ecCCceEEEEECC--CCCcEEEEEcCCCeEEEEEeccCCce-Eecc
Confidence 46899999999999999876 1111122222 2334455666654 367 8999999999999999 87765 3332
Q ss_pred ccCCCCCCC--CCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccc-cceEEEEEccCCCceEEEE
Q 020454 93 NAGDSGAQP--EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS-CSTVKSWNVCASGTIAFSK 169 (326)
Q Consensus 93 ~~~~~~~~~--~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~ 169 (326)
. +...|.++.+.+ +..+++++.|+.|++|++.......... ...+. ...+...+.+++
T Consensus 97 --------~~~~~~~v~~l~~~~---------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~ 157 (342)
T 1yfq_A 97 --------NNEANLGICRICKYG---------DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN--NTKVKNKIFTMD 157 (342)
T ss_dssp --------SCCCCSCEEEEEEET---------TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--SSSSCCCEEEEE
T ss_pred --------ccCCCCceEEEEeCC---------CCEEEEEcCCCeEEEEcccccccccccccCCeee--EEeeCCceEEEE
Confidence 3 668899888643 4689999999999999987511000000 00111 123567899999
Q ss_pred EcCCCCEEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEee-cCCCcEEEEEeCCCeEEEEeCCCC
Q 020454 170 VDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSAQ 247 (326)
Q Consensus 170 ~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~~l~~~~~dg~v~iwd~~~~ 247 (326)
++|++ +++++.|+.|++||+++ +........ ..+...+.+++|+| . ++++++++.||.|++||++..
T Consensus 158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~~~i~~i~~~~~~--~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEE-------SGLKYQIRDVALLPKE--QEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp ECSSE--EEEEESTTEEEEEESSCCTTCCCEEEE-------CSCSSCEEEEEECSGG--GCEEEEEETTSEEEEEECCTT
T ss_pred ecCCc--EEEEeCCCeEEEEECCccccccceeee-------cCCCCceeEEEECCCC--CCEEEEEecCCcEEEEEEcCC
Confidence 99877 88999999999999987 543221111 11234688999998 5 349999999999999999865
Q ss_pred -----CCceeEEeecCC---------ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454 248 -----RRPVMSFDFRET---------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (326)
Q Consensus 248 -----~~~~~~~~~~~~---------~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~ 313 (326)
..+...+..|.. .|.+++|+|++++|++|+.||.|++||+++++++..+.+||.++|.+++ |++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~ 304 (342)
T 1yfq_A 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD 304 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS
T ss_pred CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC
Confidence 356778887755 9999999999999999999999999999999999999886589999999 999
Q ss_pred CEEEEeccCcc
Q 020454 314 PIIASCGFLEA 324 (326)
Q Consensus 314 ~~l~s~s~D~~ 324 (326)
++|+++|.||.
T Consensus 305 ~~l~s~s~Dg~ 315 (342)
T 1yfq_A 305 NILCLATSDDT 315 (342)
T ss_dssp SEEEEEEECTH
T ss_pred CeEEEEecCCc
Confidence 99999999986
No 60
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-31 Score=228.24 Aligned_cols=239 Identities=18% Similarity=0.142 Sum_probs=185.0
Q ss_pred EEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCC----------CCCCCCCeeeeecccccccccCCCC
Q 020454 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG----------AQPEDDGIVGLHLFKRQREESSSRS 123 (326)
Q Consensus 54 ~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~l~~~~~~~~~~~~~~ 123 (326)
+.++.| ++++++|++|+ ++.+++|++.+++.+..+....... ...+...|.++.+.+ ++
T Consensus 67 V~~v~f--spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~--------dg 135 (393)
T 1erj_A 67 VCCVKF--SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--------DG 135 (393)
T ss_dssp CCEEEE--CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT--------TS
T ss_pred EEEEEE--CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC--------CC
Confidence 334444 44566888876 7899999999888766654311000 001223477788755 66
Q ss_pred ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCC
Q 020454 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (326)
Q Consensus 124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~ 203 (326)
..+++++.|+.|++||+.... .+..+. .+...|.+++|+|++++|++++.|++|++||+++++....+..
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~~--------~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~- 205 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENRK--------IVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI- 205 (393)
T ss_dssp SEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-
T ss_pred CEEEEEcCCCeEEEEECCCCc--------EEEEEc-cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc-
Confidence 789999999999999986533 333333 4567899999999999999999999999999999887665442
Q ss_pred CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE-------eecCCceEEEEecCCCCeEEEE
Q 020454 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-------DFRETPIKAVAEEPDSFNIYIG 276 (326)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~~~i~~v~~s~~~~~l~~g 276 (326)
...+.+++|+|. ++++|++++.|+.|++||++++ ..+..+ ..|...|++++|+|++++|++|
T Consensus 206 ---------~~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~ 274 (393)
T 1erj_A 206 ---------EDGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 274 (393)
T ss_dssp ---------SSCEEEEEECST-TCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred ---------CCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence 245889999985 5669999999999999999976 445554 4678899999999999999999
Q ss_pred cCCCcEEEEECCCC------------eEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 277 NGSGDLASVDIRTG------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 277 ~~dg~v~iwd~~~~------------~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+.||.|++||+++. .+...+.+| ...|.+++|+|++++|++||.||.+
T Consensus 275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~sgs~D~~v 334 (393)
T 1erj_A 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQNDEYILSGSKDRGV 334 (393)
T ss_dssp ETTSEEEEEEC---------------CEEEEEECC-SSCEEEEEECGGGCEEEEEETTSEE
T ss_pred eCCCEEEEEECCCCCCcccccCCCCCcceEEEecc-cCcEEEEEECCCCCEEEEEeCCCeE
Confidence 99999999999763 345667788 9999999999999999999999875
No 61
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.2e-32 Score=231.95 Aligned_cols=265 Identities=16% Similarity=0.145 Sum_probs=199.0
Q ss_pred eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce-------ee
Q 020454 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-------RV 89 (326)
Q Consensus 17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-------~~ 89 (326)
+++++.+|.|+||++... ....+....+. .+...+.++.|... .+.+|++|+.||+|++||+.++.. +.
T Consensus 50 ~~~~~~~g~i~v~~~~~~-~~~~~~~~~~~--~h~~~V~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~ 125 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKT-GRVDKNVPLVC--GHTAPVLDIAWCPH-NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125 (402)
T ss_dssp EBCCSSSCCEEEEETTCC-EECCTTCCCBC--CCSSCEEEEEECTT-CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSE
T ss_pred EEEEcCCCEEEEEECccC-CCCCCCCceEe--cCCCCEEEEEeCCC-CCCEEEEEeCCCeEEEEEccCCCCccccCCceE
Confidence 445889999999998654 11111111222 34455666666431 456899999999999999987743 23
Q ss_pred eecccCCCCCCCCCCCeeeeecccccccccCCCC-ceEEEEecCCcEEEEEccccccccccccceEEEEE-ccCCCceEE
Q 020454 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS-RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAF 167 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~-~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~ 167 (326)
.+. .|...|.++.+.+ ++ ..+++++.||.|++||+.... .+..+. ..+...|.+
T Consensus 126 ~~~--------~h~~~v~~~~~~p--------~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~v~~ 181 (402)
T 2aq5_A 126 TLE--------GHTKRVGIVAWHP--------TAQNVLLSAGCDNVILVWDVGTGA--------AVLTLGPDVHPDTIYS 181 (402)
T ss_dssp EEE--------CCSSCEEEEEECS--------SBTTEEEEEETTSCEEEEETTTTE--------EEEEECTTTCCSCEEE
T ss_pred Eec--------CCCCeEEEEEECc--------CCCCEEEEEcCCCEEEEEECCCCC--------ccEEEecCCCCCceEE
Confidence 332 5668899998765 33 589999999999999987543 344443 346778999
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCceeeeee-cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE---eCCCeEEEEe
Q 020454 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG---TNDHQVRLYD 243 (326)
Q Consensus 168 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~---~~dg~v~iwd 243 (326)
++|+|++++|++++.|+.|++||+++++.+..+ ..+.. ..+..+.|+| ++++|+++ +.|+.|++||
T Consensus 182 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~l~~g~~~~~d~~i~iwd 251 (402)
T 2aq5_A 182 VDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG--------TRPVHAVFVS--EGKILTTGFSRMSERQVALWD 251 (402)
T ss_dssp EEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS--------SSCCEEEECS--TTEEEEEEECTTCCEEEEEEE
T ss_pred EEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC--------CcceEEEEcC--CCcEEEEeccCCCCceEEEEc
Confidence 999999999999999999999999999888776 44432 1367889998 56688888 7999999999
Q ss_pred CCCCCCceeEEe-ecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeE-EEEEcce-ecceEEEEEECCCCCEEEEe
Q 020454 244 TSAQRRPVMSFD-FRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKL-LGCFIGK-CSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 244 ~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~-~~~~~~~-~~~~v~~l~~~p~~~~l~s~ 319 (326)
++....++.... .+...+.+++|+|++++|+ +|+.||.|++||+.+++. +..+..| +..+|.+++|+|++.+++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~ 331 (402)
T 2aq5_A 252 TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK 331 (402)
T ss_dssp TTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred CccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec
Confidence 998755454444 4667899999999999996 667899999999998874 4444433 15899999999999887653
No 62
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.4e-31 Score=247.80 Aligned_cols=266 Identities=15% Similarity=0.093 Sum_probs=217.5
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++++.+|.|+|||+.++ +....+..+. ..+.++.|.. ++++|++|+.||.|++||+.+++.+..+.
T Consensus 26 ~~la~~~~~g~v~iwd~~~~-----~~~~~~~~~~--~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-- 94 (814)
T 3mkq_A 26 PWVLTTLYSGRVEIWNYETQ-----VEVRSIQVTE--TPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVDFE-- 94 (814)
T ss_dssp SEEEEEETTSEEEEEETTTT-----EEEEEEECCS--SCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred CEEEEEeCCCEEEEEECCCC-----ceEEEEecCC--CcEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEe--
Confidence 56889999999999999877 4555555333 3445555544 45589999999999999999888777665
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-C
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S 173 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 173 (326)
.+.+.|.++.+.+ ++..+++++.||.|++|++.... .....+. .+...|.+++|+| +
T Consensus 95 ------~~~~~v~~~~~s~--------~~~~l~~~~~dg~i~vw~~~~~~-------~~~~~~~-~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 95 ------AHPDYIRSIAVHP--------TKPYVLSGSDDLTVKLWNWENNW-------ALEQTFE-GHEHFVMCVAFNPKD 152 (814)
T ss_dssp ------CCSSCEEEEEECS--------SSSEEEEEETTSEEEEEEGGGTS-------EEEEEEE-CCSSCEEEEEEETTE
T ss_pred ------cCCCCEEEEEEeC--------CCCEEEEEcCCCEEEEEECCCCc-------eEEEEEc-CCCCcEEEEEEEcCC
Confidence 4567899998765 56689999999999999987542 1233333 3567899999999 7
Q ss_pred CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 253 (326)
+++|++++.|+.|++||+.+++.......+. ...+..++|+|.+++.++++++.||.|++||+++. .++..
T Consensus 153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~ 223 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVAT 223 (814)
T ss_dssp EEEEEEEETTSEEEEEETTCSSCSEEEECCC--------TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeEEecCC--------CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEE
Confidence 8999999999999999998877766655432 14478899998666779999999999999999976 56888
Q ss_pred EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC--EEEEeccCc
Q 020454 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP--IIASCGFLE 323 (326)
Q Consensus 254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~s~s~D~ 323 (326)
+..|...|++++|+|++++|++|+.||.|++||+.+++.+..+..| ...|.+++|+|++. ++++++.++
T Consensus 224 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~ 294 (814)
T 3mkq_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNG 294 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS-SSSEEEEEECTTCGGGEEEEEETTE
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC-CCcEEEEEEccCCCceEEEEEeCCC
Confidence 8889999999999999999999999999999999999999999988 89999999999987 466665544
No 63
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-32 Score=248.58 Aligned_cols=279 Identities=13% Similarity=0.147 Sum_probs=205.8
Q ss_pred CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCC--CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH--SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (326)
Q Consensus 14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~ 91 (326)
.-.+++++.+|.|++||+..+ +....+..+. ....+..+.+. .+.++++++.||.|++||+.+++.+..+
T Consensus 264 ~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~g~i~~~d~~~~~~~~~~ 335 (615)
T 1pgu_A 264 SQKFATVGADATIRVWDVTTS-----KCVQKWTLDKQQLGNQQVGVVAT---GNGRIISLSLDGTLNFYELGHDEVLKTI 335 (615)
T ss_dssp SSEEEEEETTSEEEEEETTTT-----EEEEEEECCTTCGGGCEEEEEEE---ETTEEEEEETTSCEEEEETTEEEEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCC-----cEEEEEcCCCCcccCceeEEEeC---CCCeEEEEECCCCEEEEECCCCcEEEEE
Confidence 457899999999999999876 4444444331 22344445553 4558999999999999999877765555
Q ss_pred cccCCCCCCCCCCCeeeeecccc----------------------cc---cccCCCCceEEEEecCCcEEEEEcccccc-
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKR----------------------QR---EESSSRSRTLLTCTTKGKASMRSIEVTKV- 145 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~----------------------~~---~~~~~~~~~l~~~~~~g~v~i~~~~~~~~- 145 (326)
. .+...|.++.+ +. .. ....+.+..+++++.|+.+++|++.....
T Consensus 336 ~--------~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~ 406 (615)
T 1pgu_A 336 S--------GHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFG 406 (615)
T ss_dssp C--------CCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECS
T ss_pred e--------CCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCccc
Confidence 4 23344444443 20 00 00001345677777777777777654221
Q ss_pred --------------ccccccceEEEEEcc---------CCCceEEEEEcCCCCEEEEecC-CCeEEEEECCCceee-eee
Q 020454 146 --------------SAESSCSTVKSWNVC---------ASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKI-WTA 200 (326)
Q Consensus 146 --------------~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~-~~~ 200 (326)
.....++.+.+|+.. +...+.+++++ +++|++++. |+.|++||+.+++.. ..+
T Consensus 407 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~ 484 (615)
T 1pgu_A 407 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLK 484 (615)
T ss_dssp SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECS
T ss_pred CCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcccccccc
Confidence 000133445555532 23467888888 889999999 999999999987654 332
Q ss_pred cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee-cCCceEEEEecC----------C
Q 020454 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEP----------D 269 (326)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~i~~v~~s~----------~ 269 (326)
.. +...|++++|+| ++++|++++.||.|++||+.+. +++..+.. |...|++++|+| +
T Consensus 485 ~~---------~~~~v~~~~~s~--~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~ 552 (615)
T 1pgu_A 485 TP---------LRAKPSYISISP--SETYIAAGDVMGKILLYDLQSR-EVKTSRWAFRTSKINAISWKPAEKGANEEEIE 552 (615)
T ss_dssp SC---------CSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTT-EEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred CC---------ccCceEEEEECC--CCCEEEEcCCCCeEEEeeCCCC-cceeEeecCCCCceeEEEEcCccccccccccC
Confidence 22 335799999998 5679999999999999999977 55677766 899999999999 9
Q ss_pred CCeEEEEcCCCcEEEEECCCC-eEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 270 SFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 270 ~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++|++|+.||.|++||+.++ +++..+.+| ...|++++|+|+++ |++++.||.+
T Consensus 553 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~-l~s~~~d~~v 607 (615)
T 1pgu_A 553 EDLVATGSLDTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWETPST-LVSSGADACI 607 (615)
T ss_dssp CCEEEEEETTSCEEEEESSCTTCCEEETTSS-TTCEEEEEEEETTE-EEEEETTSCE
T ss_pred CCEEEEEcCCCcEEEEECCCCceechhhhcC-ccceEEEEEcCCCC-eEEecCCceE
Confidence 999999999999999999998 788888998 99999999999999 9999999975
No 64
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.5e-31 Score=221.30 Aligned_cols=227 Identities=14% Similarity=0.174 Sum_probs=173.5
Q ss_pred CCCeEEEEecCCcEEEEecccccee----eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDLR----VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~ 139 (326)
++++|++|+.|++|++||+.+++.. .....+ ..|...|.++.+.+ ++..+++++.|+.|++||
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-----~~h~~~V~~~~~~~--------~~~~l~s~s~D~~v~lwd 104 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-----TGHNHFVSDLALSQ--------ENCFAISSSWDKTLRLWD 104 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-----CCCSSCEEEEEECS--------STTEEEEEETTSEEEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchh-----ccCCCceEEEEECC--------CCCEEEEEcCCCcEEEEE
Confidence 5679999999999999998654311 111111 26678899888755 567899999999999999
Q ss_pred ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454 140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (326)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (326)
+.... .++.+. .+...|.+++|+|++++|++++.|+.|++||+...... ..... ..+..+|.++
T Consensus 105 ~~~~~--------~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~------~~~~~~v~~~ 168 (343)
T 2xzm_R 105 LRTGT--------TYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF-SSAEK------ENHSDWVSCV 168 (343)
T ss_dssp TTSSC--------EEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-ECCTT------TSCSSCEEEE
T ss_pred CCCCc--------EEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-eeecc------cCCCceeeee
Confidence 87543 344444 35778999999999999999999999999999843322 22111 1234679999
Q ss_pred EEeecCC--------CcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC-C
Q 020454 220 AFLSIDD--------HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-G 290 (326)
Q Consensus 220 ~~~p~~~--------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~-~ 290 (326)
+|+|... +.+|++++.|+.|++||.. . +....+..|...|++++|+|+|++|++|+.||.|++||+.. .
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~-~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T-EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C-ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9998531 2589999999999999954 3 45677888999999999999999999999999999999954 4
Q ss_pred eEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 291 ~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
.....+. + ...|.+++|+|++++|+++ .|+.
T Consensus 247 ~~~~~~~-~-~~~v~~v~~sp~~~~la~~-~d~~ 277 (343)
T 2xzm_R 247 YPQREFD-A-GSTINQIAFNPKLQWVAVG-TDQG 277 (343)
T ss_dssp SCSEEEE-C-SSCEEEEEECSSSCEEEEE-ESSC
T ss_pred ccceeec-C-CCcEEEEEECCCCCEEEEE-CCCC
Confidence 4444443 3 5579999999999887755 4654
No 65
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-32 Score=232.55 Aligned_cols=271 Identities=10% Similarity=0.040 Sum_probs=189.6
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc-eeeeecc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISN 93 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~-~~~~~~~ 93 (326)
-.+++++.+|.|++|++.++ ..+....+. .+...+.++.|. +++++|++++.||+|++||+.+++ .......
T Consensus 24 ~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~--~h~~~v~~~~~s--~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~ 96 (377)
T 3dwl_C 24 TEFVTTTATNQVELYEQDGN---GWKHARTFS--DHDKIVTCVDWA--PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL 96 (377)
T ss_dssp SEEECCCSSSCBCEEEEETT---EEEECCCBC--CCSSCEEEEEEC--TTTCCEEEEETTSSEEEC------CCCCEEEC
T ss_pred CEEEEecCCCEEEEEEccCC---ceEEEEEEe--cCCceEEEEEEe--CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe
Confidence 46888999999999999864 111222333 344455566554 445689999999999999998776 2222221
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (326)
..+...|.++.+.+ ++..+++++.|+.|++|+++.... ...++.+...+...|.+++|+|+
T Consensus 97 ------~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~ 157 (377)
T 3dwl_C 97 ------LRLNRAATFVRWSP--------NEDKFAVGSGARVISVCYFEQEND-----WWVSKHLKRPLRSTILSLDWHPN 157 (377)
T ss_dssp ------CCCSSCEEEEECCT--------TSSCCEEEESSSCEEECCC----------CCCCEEECSSCCSCEEEEEECTT
T ss_pred ------cccCCceEEEEECC--------CCCEEEEEecCCeEEEEEECCccc-----ceeeeEeecccCCCeEEEEEcCC
Confidence 25667899998765 567899999999999999875431 11233444336789999999999
Q ss_pred CCEEEEecCCCeEEEEECCCce------------------eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCE------------------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN 235 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~ 235 (326)
+++|++++.|+.|++||++..+ .+..+ .+...|++++|+| ++++|++++.
T Consensus 158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~sp--~~~~l~~~~~ 225 (377)
T 3dwl_C 158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----------PSGGWVHAVGFSP--SGNALAYAGH 225 (377)
T ss_dssp SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----------CCSSSEEEEEECT--TSSCEEEEET
T ss_pred CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----------cCCceEEEEEECC--CCCEEEEEeC
Confidence 9999999999999999986322 22222 2446799999998 5669999999
Q ss_pred CCeEEEEeCCCCCCc---eeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe---------------------
Q 020454 236 DHQVRLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--------------------- 291 (326)
Q Consensus 236 dg~v~iwd~~~~~~~---~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~--------------------- 291 (326)
|+.|++||+++...+ +..+..|...|.+++|+|++++|++|+.++.+ +|+.....
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (377)
T 3dwl_C 226 DSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGN 304 (377)
T ss_dssp TTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSS
T ss_pred CCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccc
Confidence 999999999987332 67788899999999999999999999877666 66654211
Q ss_pred ---------EE------EEEc----------------ceecceEEEEEECCCC-C---EEEEeccCccC
Q 020454 292 ---------LL------GCFI----------------GKCSGSIRSIARHPTL-P---IIASCGFLEAA 325 (326)
Q Consensus 292 ---------~~------~~~~----------------~~~~~~v~~l~~~p~~-~---~l~s~s~D~~~ 325 (326)
.+ ..+. .| .+.|+++++.+.. . .|+|||.||.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H-~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i 372 (377)
T 3dwl_C 305 TGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVH-QNMIATLRPYAGTPGNITAFTSSGTDGRV 372 (377)
T ss_dssp BCCCCCC-------------------------CCCSSSC-SSCEEEEEEEEEETTEEEEEEEEETTSEE
T ss_pred cccccccccccccccccccccchhhccccccccccCccc-cceeEEEeccCCCCCceEEEEeecCCCcE
Confidence 00 1111 26 8999999977643 3 69999999975
No 66
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-30 Score=242.70 Aligned_cols=280 Identities=11% Similarity=0.107 Sum_probs=204.7
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.|++|+.||.|+||+.... +...... +...+..+.|.. +++|++++.|++|++||+.+++.+..+..
T Consensus 30 ~~lAsgs~Dg~I~lw~~~~~-----~~~~~~~---~~~~V~~l~fsp---g~~L~S~s~D~~v~lWd~~~~~~~~~~~~- 97 (902)
T 2oaj_A 30 NLLAIATVTGEVHIYGQQQV-----EVVIKLE---DRSAIKEMRFVK---GIYLVVINAKDTVYVLSLYSQKVLTTVFV- 97 (902)
T ss_dssp TEEEEEETTSEEEEECSTTC-----EEEEECS---SCCCEEEEEEET---TTEEEEEETTCEEEEEETTTCSEEEEEEC-
T ss_pred CEEEEEeCCCEEEEEeCCCc-----EEEEEcC---CCCCEEEEEEcC---CCEEEEEECcCeEEEEECCCCcEEEEEcC-
Confidence 57899999999999998765 3333332 234566666654 44899999999999999998887666542
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc------------------------------
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK------------------------------ 144 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~------------------------------ 144 (326)
.+.|.++.+.+ ++..+++++.||.|++||++...
T Consensus 98 --------~~~V~~v~~sp--------~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 98 --------PGKITSIDTDA--------SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp --------SSCEEEEECCT--------TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred --------CCCEEEEEECC--------CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 25788888765 66799999999999999986432
Q ss_pred -----cccccccceEEEEEccC----------------------------CCceEEEEEcCCCCEEEEecCCCeEEEEEC
Q 020454 145 -----VSAESSCSTVKSWNVCA----------------------------SGTIAFSKVDISEKFSLFGGKGVEVNVWDL 191 (326)
Q Consensus 145 -----~~~~~~~~~~~~~~~~~----------------------------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~ 191 (326)
.+++..++.+ +|++.. ...|.+++|+|++++|++|+.|+.|++||+
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 1234456778 888643 245999999999999999999999999999
Q ss_pred CCceeeee--ec---CC-------------C-------------C-----------C------CC---C-----------
Q 020454 192 DKCEKIWT--AK---PP-------------P-------------K-----------N------SL---G----------- 209 (326)
Q Consensus 192 ~~~~~~~~--~~---~~-------------~-------------~-----------~------~~---~----------- 209 (326)
++++.+.. +. .+ . . + .+ .
T Consensus 241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s 320 (902)
T 2oaj_A 241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS 320 (902)
T ss_dssp TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence 87654321 00 00 0 0 0 00 0
Q ss_pred ------------------cC-----------------------------------------------------------C
Q 020454 210 ------------------IF-----------------------------------------------------------T 212 (326)
Q Consensus 210 ------------------~~-----------------------------------------------------------~ 212 (326)
+. +
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~ 400 (902)
T 2oaj_A 321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL 400 (902)
T ss_dssp HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence 00 0
Q ss_pred CCceeeeEEee--------------------------------cCCCcEEEEEeCCCeEEEEeCCCCCC---ceeEEe--
Q 020454 213 PTWFTSAAFLS--------------------------------IDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFD-- 255 (326)
Q Consensus 213 ~~~v~~~~~~p--------------------------------~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~-- 255 (326)
...|++++|++ .+++++|++++.|++|++||+..+.. ......
T Consensus 401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~ 480 (902)
T 2oaj_A 401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS 480 (902)
T ss_dssp TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH
T ss_pred CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech
Confidence 01122222211 02466899999999999999886521 111211
Q ss_pred -----ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC----------------------------------------
Q 020454 256 -----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG---------------------------------------- 290 (326)
Q Consensus 256 -----~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~---------------------------------------- 290 (326)
.|...|++|+|+|++++||+|+.||+|++||+.++
T Consensus 481 ~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (902)
T 2oaj_A 481 RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG 560 (902)
T ss_dssp HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence 67789999999999999999999999999999866
Q ss_pred -----eEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 291 -----KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 291 -----~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++..+.+| .+.|++|+|+|+| +||+|+.|+.+
T Consensus 561 ~~~g~~~~~~l~~h-~~~V~svafSpdG-~lAsgs~D~tv 598 (902)
T 2oaj_A 561 VRQGFMPSTAVHAN-KGKTSAINNSNIG-FVGIAYAAGSL 598 (902)
T ss_dssp CSEEEEEEEEECCC-SCSEEEEEECBTS-EEEEEETTSEE
T ss_pred CCCccceeEEEEcC-CCcEEEEEecCCc-EEEEEeCCCcE
Confidence 246778888 9999999999999 99999999975
No 67
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.9e-31 Score=217.12 Aligned_cols=241 Identities=13% Similarity=0.131 Sum_probs=176.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-+|++|+.||.|+||++... .. +....+. .+...+.++.|.....+++|++|+.||+|++||+.+++.......
T Consensus 22 ~~las~s~D~~v~iw~~~~~-~~--~~~~~l~--gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~- 95 (297)
T 2pm7_B 22 KRMATCSSDKTIKIFEVEGE-TH--KLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH- 95 (297)
T ss_dssp SEEEEEETTSCEEEEEBCSS-CB--CCCEEEC--CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE-
T ss_pred CEEEEEeCCCEEEEEecCCC-Cc--EEEEEEc--cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe-
Confidence 57999999999999999753 11 2223443 334456666665443466899999999999999987653222111
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC-
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 173 (326)
..|...|.++.+.+.. .+..+++++.||.|++|++...... ...... .+...|.+++|+|+
T Consensus 96 -----~~h~~~v~~v~~~p~~------~g~~l~s~s~d~~v~~wd~~~~~~~------~~~~~~-~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 96 -----AVHSASVNSVQWAPHE------YGPMLLVASSDGKVSVVEFKENGTT------SPIIID-AHAIGVNSASWAPAT 157 (297)
T ss_dssp -----CCCSSCEEEEEECCGG------GCSEEEEEETTSEEEEEEBCSSSCB------CCEEEE-CCSSCEEEEEECCCC
T ss_pred -----ecCCCceeEEEeCcCC------CCcEEEEEECCCcEEEEEecCCCce------eeeeee-cccCccceEeecCCc
Confidence 1456789988875521 1468999999999999998754211 112222 45678999999996
Q ss_pred ------------CCEEEEecCCCeEEEEECCCce----eeeeecCCCCCCCCcCCCCceeeeEEeecC-CCcEEEEEeCC
Q 020454 174 ------------EKFSLFGGKGVEVNVWDLDKCE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND 236 (326)
Q Consensus 174 ------------~~~l~sg~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~~l~~~~~d 236 (326)
+++|++|+.|+.|++||+++++ ....+..|. .+|.+++|+|.. .+.+|++++.|
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~---------~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS---------DWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS---------SCEEEEEECCCCSSSEEEEEEETT
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC---------CceEEEEECCCCCCceEEEEEECC
Confidence 4799999999999999998765 344455443 679999999952 14699999999
Q ss_pred CeEEEEeCCCCCCc-e-eEE--eecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 237 HQVRLYDTSAQRRP-V-MSF--DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 237 g~v~iwd~~~~~~~-~-~~~--~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
++|++||++....+ . ..+ ..+...|.+++|+|++++|++++.||.|++|+..
T Consensus 229 ~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99999998864221 1 222 3467889999999999999999999999999986
No 68
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.3e-31 Score=222.52 Aligned_cols=242 Identities=12% Similarity=0.059 Sum_probs=175.1
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-+|++|+.||.|++||+..+ .......+. .+...+.++.|.....+++|++|+.|++|++||+++++.......
T Consensus 26 ~~lasgs~D~~v~lwd~~~~---~~~~~~~l~--gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~- 99 (316)
T 3bg1_A 26 TRLATCSSDRSVKIFDVRNG---GQILIADLR--GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH- 99 (316)
T ss_dssp CEEEEEETTTEEEEEEEETT---EEEEEEEEE--CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE-
T ss_pred CEEEEEeCCCeEEEEEecCC---CcEEEEEEc--CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc-
Confidence 57999999999999999865 111223333 344456666665433456899999999999999987653222221
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC-
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 173 (326)
..|...|.++.+.+.. .+..+++++.||.|++|++...... .+......+...+.+++|+|+
T Consensus 100 -----~~h~~~V~~v~~~p~~------~g~~lasgs~D~~i~lwd~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 100 -----AGHDSSVNSVCWAPHD------YGLILACGSSDGAISLLTYTGEGQW------EVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp -----CCCSSCCCEEEECCTT------TCSCEEEECSSSCEEEEEECSSSCE------EECCBTTSSSSCBCCCEECCCC
T ss_pred -----cCCCCceEEEEECCCC------CCcEEEEEcCCCCEEEEecCCCCCc------ceeeeeccccCCcceEEEcccc
Confidence 1566789988875521 2468999999999999998653210 000001134557888888886
Q ss_pred ----------------CCEEEEecCCCeEEEEECCCc---eeeeeecCCCCCCCCcCCCCceeeeEEeecC--CCcEEEE
Q 020454 174 ----------------EKFSLFGGKGVEVNVWDLDKC---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID--DHRKFVA 232 (326)
Q Consensus 174 ----------------~~~l~sg~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~~l~~ 232 (326)
+++|++|+.|+.|++||++.. +.+..+..| ..+|.+++|+|.. ++.+|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h---------~~~V~~v~~sp~~~~~~~~las 233 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH---------SDWVRDVAWAPSIGLPTSTIAS 233 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC---------SSCEEEEECCCCSSCSCCEEEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC---------CCceEEEEecCCCCCCCceEEE
Confidence 478999999999999999754 344444443 3679999999953 2368999
Q ss_pred EeCCCeEEEEeCCCCC---CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 233 GTNDHQVRLYDTSAQR---RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 233 ~~~dg~v~iwd~~~~~---~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
++.|++|++||++... .....+..|...|.+++|+|++++|++|+.||.|++|+..
T Consensus 234 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 234 CSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999999987521 1233456678899999999999999999999999999976
No 69
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.3e-30 Score=218.69 Aligned_cols=258 Identities=11% Similarity=0.051 Sum_probs=193.1
Q ss_pred CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc----eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCce
Q 020454 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD----LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 125 (326)
+...+.++.|. +++++|++|+.||.|++||+.++. ....+. .+..+|.++.+.+.. ++..
T Consensus 10 H~~~v~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~------d~~~ 73 (351)
T 3f3f_A 10 HDDLVHDVVYD--FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR--------AHDSSIVAIDWASPE------YGRI 73 (351)
T ss_dssp CSSCEEEEEEC--SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE--------CCSSCEEEEEECCGG------GCSE
T ss_pred cccceeEEEEc--CCCCEEEEeeCCCeEEEEECCCCCCcceecceec--------cCCCcEEEEEEcCCC------CCCE
Confidence 44556666664 456689999999999999998653 222222 566889999875521 2568
Q ss_pred EEEEecCCcEEEEEcccccccccc-ccceEEEEEccCCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCceeeeeecC
Q 020454 126 LLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (326)
Q Consensus 126 l~~~~~~g~v~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 202 (326)
+++++.||.|++|+++........ ....+..+. .+...|.+++|+|+ +++|++++.|+.|++||+++++.+..+..
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 152 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL 152 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE
T ss_pred EEEEcCCCeEEEEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc
Confidence 999999999999998764321111 112333333 45678999999999 99999999999999999988764433211
Q ss_pred C----CCCCCCcCCCCceeeeEEeec-CCCcEEEEEeCCCeEEEEeCCCCCC-ceeEEeecCCceEEEEecCCC----Ce
Q 020454 203 P----PKNSLGIFTPTWFTSAAFLSI-DDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDS----FN 272 (326)
Q Consensus 203 ~----~~~~~~~~~~~~v~~~~~~p~-~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~i~~v~~s~~~----~~ 272 (326)
. ........+...+.+++|+|. .++.++++++.++.+.+|+...... .+..+..|...|++++|+|++ ++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~ 232 (351)
T 3f3f_A 153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232 (351)
T ss_dssp EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEE
T ss_pred cccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceE
Confidence 0 000001123457889999984 1256999999999998888775521 256677889999999999998 89
Q ss_pred EEEEcCCCcEEEEECCCC----------------------------------------------eEEEEEcceecceEEE
Q 020454 273 IYIGNGSGDLASVDIRTG----------------------------------------------KLLGCFIGKCSGSIRS 306 (326)
Q Consensus 273 l~~g~~dg~v~iwd~~~~----------------------------------------------~~~~~~~~~~~~~v~~ 306 (326)
|++|+.||.|++||++++ +.+..+.+| ...|++
T Consensus 233 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~ 311 (351)
T 3f3f_A 233 IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH-NGEVWS 311 (351)
T ss_dssp EEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT-SSCEEE
T ss_pred EEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc-cccEEE
Confidence 999999999999999875 667778888 999999
Q ss_pred EEECCCCCEEEEeccCccC
Q 020454 307 IARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 307 l~~~p~~~~l~s~s~D~~~ 325 (326)
++|+|++++|++++.||.+
T Consensus 312 ~~~s~~~~~l~s~~~dg~v 330 (351)
T 3f3f_A 312 VSWNLTGTILSSAGDDGKV 330 (351)
T ss_dssp EEECSSSCCEEEEETTSCE
T ss_pred EEEcCCCCEEEEecCCCcE
Confidence 9999999999999999975
No 70
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.6e-30 Score=219.98 Aligned_cols=269 Identities=10% Similarity=0.064 Sum_probs=200.5
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..|++|+.+|.|++|++... +. .+...+.. +...+.+++|. +.+++|++++.||.|++||+.+++.+...
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~--~~-~~~~~~~~--h~~~v~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--- 124 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDS--GQ-TIPKAQQM--HTGPVLDVCWS--DDGSKVFTASCDKTAKMWDLSSNQAIQIA--- 124 (368)
T ss_dssp EEEEEEETTSEEEEEEECTT--SC-EEEEEEEE--CSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEE---
T ss_pred eEEEEECCCCcEEEEEcCCC--Cc-eeEEEecc--ccCCEEEEEEC--cCCCEEEEEcCCCcEEEEEcCCCCceeec---
Confidence 68999999999999999862 11 12123332 33445555554 45668999999999999999888765532
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.+...|.++.+.+. +++..+++++.||.|++||+.... .+..+.. ...+.++.+.+
T Consensus 125 ------~~~~~v~~~~~~~~------~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~--~~~~~~~~~~~-- 180 (368)
T 3mmy_A 125 ------QHDAPVKTIHWIKA------PNYSCVMTGSWDKTLKFWDTRSSN--------PMMVLQL--PERCYCADVIY-- 180 (368)
T ss_dssp ------ECSSCEEEEEEEEC------SSCEEEEEEETTSEEEEECSSCSS--------CSEEEEC--SSCEEEEEEET--
T ss_pred ------cccCceEEEEEEeC------CCCCEEEEccCCCcEEEEECCCCc--------EEEEEec--CCCceEEEecC--
Confidence 34578998887321 155689999999999999987543 3334443 34666676664
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC--CcEEEEEeCCCeEEEEeCCCCC--Cc
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQR--RP 250 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~~l~~~~~dg~v~iwd~~~~~--~~ 250 (326)
..+++++.++.+++||++............ ....+..+.+.+... ...+++++.||.|++||++... ..
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~ 253 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRRIESP-------LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKD 253 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEECCCS-------CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHH
T ss_pred CeeEEEeCCCcEEEEEeccccchhhhcccc-------ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccc
Confidence 578888899999999998765544332211 112345556555322 1249999999999999998652 23
Q ss_pred eeEEeecCC------------ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEE
Q 020454 251 VMSFDFRET------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (326)
Q Consensus 251 ~~~~~~~~~------------~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s 318 (326)
+..+..|.. .|++++|+|++++|++|+.||.|++||+++++++..+.+| ..+|++++|+|++++|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~ 332 (368)
T 3mmy_A 254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-DQPISACCFNHNGNIFAY 332 (368)
T ss_dssp SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSCEEEEEECTTSSCEEE
T ss_pred ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC-CCCceEEEECCCCCeEEE
Confidence 556666654 7999999999999999999999999999999999999998 999999999999999999
Q ss_pred eccCccC
Q 020454 319 CGFLEAA 325 (326)
Q Consensus 319 ~s~D~~~ 325 (326)
+|.|+..
T Consensus 333 ~s~d~~~ 339 (368)
T 3mmy_A 333 ASSYDWS 339 (368)
T ss_dssp EECCCST
T ss_pred Eeccccc
Confidence 9999864
No 71
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.5e-30 Score=217.55 Aligned_cols=238 Identities=13% Similarity=0.088 Sum_probs=189.0
Q ss_pred ceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (326)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~ 131 (326)
..+.++++. +.+++|++++ ||.|++||+.+++....+..... ..+...+.++.+.+ ++..+++++.
T Consensus 52 ~~v~~~~~~--~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~--------~~~~l~~~~~ 117 (337)
T 1gxr_A 52 EVVCAVTIS--NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDC---LNRDNYIRSCKLLP--------DGCTLIVGGE 117 (337)
T ss_dssp SCCCEEEEC--SSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEEC---SCTTSBEEEEEECT--------TSSEEEEEES
T ss_pred CceEEEEEe--cCCcEEEEcC-CCeEEEEECCCCCceeeeecccc---cCCCCcEEEEEEcC--------CCCEEEEEcC
Confidence 344445553 4566888888 99999999987664333332110 14557899888765 5678999999
Q ss_pred CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (326)
+|.|++|+++.... .....+ ..+...+.+++++|++++|++++.|+.|++||+++++.+..+..+.
T Consensus 118 d~~i~~~d~~~~~~------~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~------- 183 (337)
T 1gxr_A 118 ASTLSIWDLAAPTP------RIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT------- 183 (337)
T ss_dssp SSEEEEEECCCC--------EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-------
T ss_pred CCcEEEEECCCCCc------ceeeec-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc-------
Confidence 99999999875431 112222 2356789999999999999999999999999999998888776644
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~ 291 (326)
..+.+++|+| ++++|++++.|+.|++||+++. +.+..+ .+...+.+++|+|++++|++++.+|.|++||+++++
T Consensus 184 --~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~ 257 (337)
T 1gxr_A 184 --DGASCIDISN--DGTKLWTGGLDNTVRSWDLREG-RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD 257 (337)
T ss_dssp --SCEEEEEECT--TSSEEEEEETTSEEEEEETTTT-EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred --CceEEEEECC--CCCEEEEEecCCcEEEEECCCC-ceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC
Confidence 5688999998 5669999999999999999976 445555 466889999999999999999999999999999887
Q ss_pred EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 292 LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 292 ~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.. .+..| ...|.+++|+|++++|++++.||.+
T Consensus 258 ~~-~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i 289 (337)
T 1gxr_A 258 KY-QLHLH-ESCVLSLKFAYCGKWFVSTGKDNLL 289 (337)
T ss_dssp EE-EECCC-SSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eE-EEcCC-ccceeEEEECCCCCEEEEecCCCcE
Confidence 64 56777 9999999999999999999999864
No 72
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.9e-30 Score=224.64 Aligned_cols=232 Identities=14% Similarity=0.133 Sum_probs=183.1
Q ss_pred CCeEEEEecCCcEEEEeccc----------cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCc-eEEEEecCC
Q 020454 65 DPLLAVARKNGLTDILNPLN----------GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR-TLLTCTTKG 133 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~l~~~~~~g 133 (326)
..+|++++.||.|++|++.+ .+.+..+. .|...+.++.+.+ .+. .|++++.||
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~~--------~~~~~l~s~~~dg 204 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR--------GHQKEGYGLSWNP--------NLNGYLLSASDDH 204 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE--------CCSSCCCCEEECT--------TSTTEEEEECTTS
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec--------CCCCCeEEEEeCC--------CCCCeEEEEeCCC
Confidence 45899999999999999975 23323332 4557888888755 334 899999999
Q ss_pred cEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCc---eeeeeecCCCCCCCC
Q 020454 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKC---EKIWTAKPPPKNSLG 209 (326)
Q Consensus 134 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~ 209 (326)
.|++|++....... ........+. .+...|.+++|+| ++.+|++++.|+.|++||++++ +.+..+..|
T Consensus 205 ~i~vwd~~~~~~~~-~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~------ 276 (430)
T 2xyi_A 205 TICLWDINATPKEH-RVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH------ 276 (430)
T ss_dssp CEEEEETTSCCBGG-GEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC------
T ss_pred eEEEEeCCCCCCCC-ceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC------
Confidence 99999987632110 0001122332 4567899999999 6789999999999999999976 344444443
Q ss_pred cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCC-eEEEEcCCCcEEEEECC
Q 020454 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIR 288 (326)
Q Consensus 210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~g~~dg~v~iwd~~ 288 (326)
...|++++|+|. ...++++++.||.|++||++....++..+..|...|++++|+|+++ +|++++.||.|++||+.
T Consensus 277 ---~~~v~~i~~~p~-~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 277 ---TAEVNCLSFNPY-SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp ---SSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred ---CCCeEEEEeCCC-CCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence 356899999985 3347999999999999999986577889999999999999999985 58899999999999998
Q ss_pred C--------------CeEEEEEcceecceEEEEEECCCCC-EEEEeccCccC
Q 020454 289 T--------------GKLLGCFIGKCSGSIRSIARHPTLP-IIASCGFLEAA 325 (326)
Q Consensus 289 ~--------------~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~s~D~~~ 325 (326)
. .+++..+.+| ...|++++|+|+++ +|++++.||.+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~s~dg~i 403 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWIICSVSEDNIM 403 (430)
T ss_dssp GTTCCCCHHHHHHCCTTEEEECCCC-SSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred CCccccCccccccCCcceEEEcCCC-CCCceEEEECCCCCCEEEEEECCCCE
Confidence 7 3667777887 99999999999999 99999999865
No 73
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.9e-33 Score=235.79 Aligned_cols=229 Identities=10% Similarity=0.047 Sum_probs=175.6
Q ss_pred CCCCCeEEEEecCCcEEEEecccc--ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454 62 SQNDPLLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (326)
Q Consensus 62 ~~~~~~l~~g~~dg~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~ 139 (326)
++++++|++|+.||.|++||+.++ +.+..+. .|...|.++.+.+ ++..|++++.||.|++|+
T Consensus 20 s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~--------~h~~~v~~~~~s~--------~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 20 NSQRTEFVTTTATNQVELYEQDGNGWKHARTFS--------DHDKIVTCVDWAP--------KSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp CSSSSEEECCCSSSCBCEEEEETTEEEECCCBC--------CCSSCEEEEEECT--------TTCCEEEEETTSSEEEC-
T ss_pred CCCCCEEEEecCCCEEEEEEccCCceEEEEEEe--------cCCceEEEEEEeC--------CCCEEEEEeCCCeEEEEE
Confidence 345668999999999999999877 4433333 5668899999765 567899999999999999
Q ss_pred ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCcee---eeeecCCCCCCCCcCCCCce
Q 020454 140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWF 216 (326)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v 216 (326)
+..... ...... -..+...|.+++|+|++++|++++.|+.|++||+++++. ...+.. .+...|
T Consensus 84 ~~~~~~-----~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~h~~~v 149 (377)
T 3dwl_C 84 KRPDGT-----WKQTLV-LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR--------PLRSTI 149 (377)
T ss_dssp -----C-----CCCEEE-CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS--------SCCSCE
T ss_pred cCCCCc-----eeeeeE-ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec--------ccCCCe
Confidence 875430 001111 123567899999999999999999999999999998763 444433 023679
Q ss_pred eeeEEeecCCCcEEEEEeCCCeEEEEeCCCC-----------------CCceeEEeecCCceEEEEecCCCCeEEEEcCC
Q 020454 217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-----------------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (326)
Q Consensus 217 ~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~-----------------~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d 279 (326)
++++|+| ++++|++++.|+.|++||++.. .+++..+ .|...|++++|+|++++|++|+.|
T Consensus 150 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d 226 (377)
T 3dwl_C 150 LSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHD 226 (377)
T ss_dssp EEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETT
T ss_pred EEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCC
Confidence 9999998 5669999999999999998522 1234444 788899999999999999999999
Q ss_pred CcEEEEECCCCeE----EEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 280 GDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 280 g~v~iwd~~~~~~----~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
|.|++||+++++. +..+.+| ..+|.+++|+|++++|++++.|+.
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~ 274 (377)
T 3dwl_C 227 SSVTIAYPSAPEQPPRALITVKLS-QLPLRSLLWANESAIVAAGYNYSP 274 (377)
T ss_dssp TEEC-CEECSTTSCEEECCCEECS-SSCEEEEEEEETTEEEEEESSSSE
T ss_pred CcEEEEECCCCCCcceeeEeecCC-CCceEEEEEcCCCCEEEEEcCCcE
Confidence 9999999999877 7788888 999999999999999999987764
No 74
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-32 Score=226.68 Aligned_cols=229 Identities=7% Similarity=0.034 Sum_probs=174.5
Q ss_pred CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~ 143 (326)
++.+|++|+.||+|++||+.+++.+..+.. ..+..+.+.+ . +++++.|+.+++|+.+..
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~----------~~v~~~~~~~----------~-~~s~s~D~~i~~w~~~~~ 105 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTITT----------PNPRTGGEHP----------A-IISRGPCNRLLLLYPGNQ 105 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEEE----------ECCCTTCCCC----------S-EEEECSTTEEEEEETTTE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEec----------CCceeeeeCC----------c-eEEecCCCeEEEEEccCc
Confidence 344799999999999999998887776653 4555555432 2 999999999999987643
Q ss_pred cccccc-ccceEEEEEccCCCceEEEEEcC--CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeE
Q 020454 144 KVSAES-SCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (326)
Q Consensus 144 ~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (326)
...... ....++.....+...|.+++++| ++++|++++.|+.|++||+++++.+.....+. ...+++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--------~~~i~~~~ 177 (343)
T 3lrv_A 106 ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS--------DVEYSSGV 177 (343)
T ss_dssp EEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS--------SCCCCEEE
T ss_pred eEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC--------CCceEEEE
Confidence 211111 12235555556667899999999 99999999999999999999988765543322 23488999
Q ss_pred EeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc-
Q 020454 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG- 298 (326)
Q Consensus 221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~- 298 (326)
|+| ++.+|++|+.||.|++||++++......+.. |..+|++++|+|++.+|++++ ++.|++||+++++.+..+..
T Consensus 178 ~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~ 254 (343)
T 3lrv_A 178 LHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY 254 (343)
T ss_dssp ECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC
T ss_pred ECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc
Confidence 998 5679999999999999999987443277887 899999999999999999999 45999999999876554432
Q ss_pred --eecceEE--EEEECCCCCEEEEecc-CccC
Q 020454 299 --KCSGSIR--SIARHPTLPIIASCGF-LEAA 325 (326)
Q Consensus 299 --~~~~~v~--~l~~~p~~~~l~s~s~-D~~~ 325 (326)
| ...+. +++|+|++++|++++. |+.+
T Consensus 255 ~~~-~~~~~~~~~~~~~~g~~l~~~s~~d~~i 285 (343)
T 3lrv_A 255 TIP-EFKTGTVTYDIDDSGKNMIAYSNESNSL 285 (343)
T ss_dssp BC------CCEEEEECTTSSEEEEEETTTTEE
T ss_pred ccc-cccccceEEEECCCCCEEEEecCCCCcE
Confidence 3 34444 6999999999999887 7653
No 75
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5e-31 Score=225.73 Aligned_cols=251 Identities=12% Similarity=0.119 Sum_probs=192.4
Q ss_pred CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc------eeeeecccCCCCCCCCCCCeeeeecccccccccCCC
Q 020454 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (326)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 122 (326)
.+...+.+++|.. ++|++|+.||.|++|++.+++ ....+. .+..+|.++.+.+... .+
T Consensus 14 ~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~----~~ 77 (397)
T 1sq9_A 14 AHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--------VHKSGLHHVDVLQAIE----RD 77 (397)
T ss_dssp CSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--------CCTTCEEEEEEEEEEE----TT
T ss_pred hhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEe--------cCCCcEEEEEEecccc----cC
Confidence 3455666777643 589999999999999998877 344443 4567899998766200 01
Q ss_pred C---ceEEEEecCCcEEEEEccccccccccccceEEEEEccC----CCceEEEEEc----CCCCE-EEEecCCCeEEEEE
Q 020454 123 S---RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIAFSKVD----ISEKF-SLFGGKGVEVNVWD 190 (326)
Q Consensus 123 ~---~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~----~~~~~-l~sg~~d~~i~iwd 190 (326)
+ ..+++++.||.|++|++...... ....+..+.... ...|.+++|+ |++++ |++++.|+.|++||
T Consensus 78 g~~~~~l~s~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 78 AFELCLVATTSFSGDLLFYRITREDET---KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 154 (397)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTT---CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred CccccEEEEEcCCCCEEEEEccCCccc---ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence 5 68999999999999998764420 001133333322 3789999999 99999 99999999999999
Q ss_pred CCC------ceeee-----eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee---
Q 020454 191 LDK------CEKIW-----TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--- 256 (326)
Q Consensus 191 ~~~------~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--- 256 (326)
+++ ++.+. .+.... .....+...|++++|+| ++ ++++++.|+.|++||+++. +++..+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~ 228 (397)
T 1sq9_A 155 FHPFADESNSLTLNWSPTLELQGTV--ESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTL-RPLYNFESQHS 228 (397)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEEE--CCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTT-EEEEEEECCC-
T ss_pred CCccccccccceeeccCcceeeeee--ccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCC-ceeEEEecccc
Confidence 987 55444 332100 00011345688999998 56 9999999999999999976 67888888
Q ss_pred c---CCceEEEEecCCCCeEEEEcCC---CcEEEEECCCCeEEEEEcc-------------eecceEEEEEECCCCCEEE
Q 020454 257 R---ETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIG-------------KCSGSIRSIARHPTLPIIA 317 (326)
Q Consensus 257 ~---~~~i~~v~~s~~~~~l~~g~~d---g~v~iwd~~~~~~~~~~~~-------------~~~~~v~~l~~~p~~~~l~ 317 (326)
| ...|.+++|+|++++|++++.| |.|++||+++++.+..+.+ | ...|.+++|+|++++|+
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLC 307 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEE
T ss_pred ccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc-CCcEEEEEECCCCCEEE
Confidence 8 8999999999999999999999 9999999999999999998 8 99999999999999999
Q ss_pred EeccCccC
Q 020454 318 SCGFLEAA 325 (326)
Q Consensus 318 s~s~D~~~ 325 (326)
+++.||.+
T Consensus 308 ~~~~dg~i 315 (397)
T 1sq9_A 308 SAGWDGKL 315 (397)
T ss_dssp EEETTSEE
T ss_pred EEeCCCeE
Confidence 99999865
No 76
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-31 Score=223.90 Aligned_cols=259 Identities=8% Similarity=-0.006 Sum_probs=182.0
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc---------cc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL---------NG 85 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~---------~~ 85 (326)
..+++|+.||.|++||+.++ +....+.. . .+..+.+ .+. +++++.|++|++|+.. ++
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~-----~~~~~~~~--~--~v~~~~~--~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDS-----KTITTITT--P--NPRTGGE--HPA---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp EEEEEEEETTEEEEEEESSS-----SCEEEEEE--E--CCCTTCC--CCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred CEEEEECCCCcEEEEECCCC-----cEEEEEec--C--Cceeeee--CCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 67999999999999999877 33323321 0 1111111 122 8999999999999765 33
Q ss_pred ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCce
Q 020454 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v 165 (326)
+.+..+.. .+.++|.++.+.+.. .+..+++++.||.|++||++... .+......+...+
T Consensus 115 ~~~~~~~~-------~~~~~v~~~~~~~~~------~~~~l~s~s~dg~i~~wd~~~~~--------~~~~~~~~~~~~i 173 (343)
T 3lrv_A 115 KVLREIEV-------DSANEIIYMYGHNEV------NTEYFIWADNRGTIGFQSYEDDS--------QYIVHSAKSDVEY 173 (343)
T ss_dssp CEEEEEEC-------CCSSCEEEEECCC---------CCEEEEEETTCCEEEEESSSSC--------EEEEECCCSSCCC
T ss_pred ceeEEeec-------CCCCCEEEEEcCCCC------CCCEEEEEeCCCcEEEEECCCCc--------EEEEEecCCCCce
Confidence 32333332 444678888864311 34689999999999999987543 3444444556679
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCceee-eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeC
Q 020454 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244 (326)
Q Consensus 166 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~ 244 (326)
.+++|+|++.+|++|+.|+.|++||+++++.+ ..+.. .|...|++++|+| ++.+|++++ |+.|++||+
T Consensus 174 ~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~--------~h~~~v~~l~fs~--~g~~l~s~~-~~~v~iwd~ 242 (343)
T 3lrv_A 174 SSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV--------DEEAKIKEVKFAD--NGYWMVVEC-DQTVVCFDL 242 (343)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC--------CTTSCEEEEEECT--TSSEEEEEE-SSBEEEEET
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec--------cCCCCEEEEEEeC--CCCEEEEEe-CCeEEEEEc
Confidence 99999999999999999999999999988776 45444 1236799999998 566999999 559999999
Q ss_pred CCCCCceeEEee---cCCceE--EEEecCCCCeEEEEcC-CCcEEEEECCCCeEEEEEcceecceEEEEEECC---CCCE
Q 020454 245 SAQRRPVMSFDF---RETPIK--AVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP---TLPI 315 (326)
Q Consensus 245 ~~~~~~~~~~~~---~~~~i~--~v~~s~~~~~l~~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p---~~~~ 315 (326)
+.. ..+..+.. +...+. +++|+|+|++|++++. |+.+++|++.+....... .++..+.|.| +...
T Consensus 243 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 316 (343)
T 3lrv_A 243 RKD-VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTD 316 (343)
T ss_dssp TSS-TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCE
T ss_pred CCC-CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccce
Confidence 976 33433332 333443 6999999999999988 999999999765433221 4677788887 7778
Q ss_pred EEEeccCccC
Q 020454 316 IASCGFLEAA 325 (326)
Q Consensus 316 l~s~s~D~~~ 325 (326)
|++++.||.+
T Consensus 317 l~~~~~d~~~ 326 (343)
T 3lrv_A 317 MDVVCGDGGI 326 (343)
T ss_dssp EEEEEETTEE
T ss_pred eEEEecCCce
Confidence 8888888754
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.5e-30 Score=220.69 Aligned_cols=233 Identities=9% Similarity=0.069 Sum_probs=188.2
Q ss_pred EEEEEeeeCCCCCeEEEEecCCcEEEEeccccc--eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (326)
Q Consensus 54 ~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~ 131 (326)
+.++++. +++++|++|+.||.|++||+.+++ .+..+. .+...|.++.+.+ ++..+++++.
T Consensus 11 i~~~~~s--~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~--------~~~~l~~~~~ 72 (372)
T 1k8k_C 11 ISCHAWN--KDRTQIAICPNNHEVHIYEKSGNKWVQVHELK--------EHNGQVTGVDWAP--------DSNRIVTCGT 72 (372)
T ss_dssp CCEEEEC--TTSSEEEEECSSSEEEEEEEETTEEEEEEEEE--------CCSSCEEEEEEET--------TTTEEEEEET
T ss_pred eEEEEEC--CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec--------CCCCcccEEEEeC--------CCCEEEEEcC
Confidence 3344443 456689999999999999998876 444444 4567899998766 5678999999
Q ss_pred CCcEEEEEccccccccccccceEEEEE-ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCcee---eeeecCCCCCC
Q 020454 132 KGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNS 207 (326)
Q Consensus 132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~ 207 (326)
||.|++|+++... ...... ..+...|.+++|+|++++|++++.|+.|++||++..+. ......
T Consensus 73 dg~i~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~----- 139 (372)
T 1k8k_C 73 DRNAYVWTLKGRT--------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK----- 139 (372)
T ss_dssp TSCEEEEEEETTE--------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT-----
T ss_pred CCeEEEEECCCCe--------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec-----
Confidence 9999999986533 122222 34567899999999999999999999999999987653 222211
Q ss_pred CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC------------------CCCCceeEEeecCCceEEEEecCC
Q 020454 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS------------------AQRRPVMSFDFRETPIKAVAEEPD 269 (326)
Q Consensus 208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~------------------~~~~~~~~~~~~~~~i~~v~~s~~ 269 (326)
.+...|++++|+| ++++|++++.|+.|++||++ .. .++..+..|...|.+++|+|+
T Consensus 140 ---~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 140 ---PIRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG-ELMFESSSSCGWVHGVCFSAN 213 (372)
T ss_dssp ---TCCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTT-CEEEECCCCSSCEEEEEECSS
T ss_pred ---ccCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchh-hheEecCCCCCeEEEEEECCC
Confidence 1235699999998 56699999999999999964 23 567777788899999999999
Q ss_pred CCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 270 SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 270 ~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++|++++.||.|++||+++++++..+..| ..+|.+++|+|++.+|+++ .|+.+
T Consensus 214 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~d~~i 267 (372)
T 1k8k_C 214 GSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFITESSLVAAG-HDCFP 267 (372)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEEETTEEEEEE-TTSSC
T ss_pred CCEEEEEeCCCEEEEEECCCCceeEEEccC-CCCeEEEEEecCCCEEEEE-eCCeE
Confidence 999999999999999999999999999998 9999999999999988877 78764
No 78
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-30 Score=222.62 Aligned_cols=267 Identities=8% Similarity=0.079 Sum_probs=202.5
Q ss_pred cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc-----CCC
Q 020454 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA-----GDS 97 (326)
Q Consensus 23 ~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~-----~~~ 97 (326)
++.+++|+.... +...... .+...+.++.+.. .++++|++|+.||.|++||+.+++....+... ...
T Consensus 22 ~~~~~v~~~~~~-----~~~~~~~--~h~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 93 (408)
T 4a11_B 22 ESTRRVLGLELN-----KDRDVER--IHGGGINTLDIEP-VEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRD 93 (408)
T ss_dssp HHHHHHHTEEEC-----TTEEECC--CCSSCEEEEEECT-TTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTT
T ss_pred cCcceeeccccC-----cceeeee--ccCCcEEEEEEec-CCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccc
Confidence 445777887755 2222222 2445566666643 15668999999999999999877655544311 000
Q ss_pred CCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC---C
Q 020454 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS---E 174 (326)
Q Consensus 98 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~ 174 (326)
....+...|.++.+.+. ....+++++.||.|++|++.... .+..+. ....+.++.+++. +
T Consensus 94 ~~~~~~~~v~~~~~~~~-------~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~ 156 (408)
T 4a11_B 94 HPDVHRYSVETVQWYPH-------DTGMFTSSSFDKTLKVWDTNTLQ--------TADVFN--FEETVYSHHMSPVSTKH 156 (408)
T ss_dssp CTTCCSSCEEEEEECTT-------CTTCEEEEETTSEEEEEETTTTE--------EEEEEE--CSSCEEEEEECSSCSSC
T ss_pred ccccCCCcEEEEEEccC-------CCcEEEEEeCCCeEEEeeCCCCc--------cceecc--CCCceeeeEeecCCCCC
Confidence 11246688999987551 34589999999999999987543 334444 4668899999885 4
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 254 (326)
.++++++.|+.|++||+++++.+..+..+. ..|++++|+|. ...+|++++.||.|++||++....++..+
T Consensus 157 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---------~~v~~~~~~~~-~~~ll~~~~~dg~i~i~d~~~~~~~~~~~ 226 (408)
T 4a11_B 157 CLVAVGTRGPKVQLCDLKSGSCSHILQGHR---------QEILAVSWSPR-YDYILATASADSRVKLWDVRRASGCLITL 226 (408)
T ss_dssp CEEEEEESSSSEEEEESSSSCCCEEECCCC---------SCEEEEEECSS-CTTEEEEEETTSCEEEEETTCSSCCSEEC
T ss_pred cEEEEEcCCCeEEEEeCCCcceeeeecCCC---------CcEEEEEECCC-CCcEEEEEcCCCcEEEEECCCCCcccccc
Confidence 599999999999999999988877776544 56899999984 23368999999999999998765455554
Q ss_pred ---------------eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-----------------------------
Q 020454 255 ---------------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----------------------------- 290 (326)
Q Consensus 255 ---------------~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~----------------------------- 290 (326)
..|...|++++|+|++++|++++.||.|++||++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (408)
T 4a11_B 227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSE 306 (408)
T ss_dssp CTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSC
T ss_pred cccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCce
Confidence 467789999999999999999999999999998753
Q ss_pred ------------------eEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 291 ------------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 291 ------------------~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++..+.+| .+.|++++|+|++++|++++.||.+
T Consensus 307 ~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i 358 (408)
T 4a11_B 307 FVFVPYGSTIAVYTVYSGEQITMLKGH-YKTVDCCVFQSNFQELYSGSRDCNI 358 (408)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEECCC-SSCEEEEEEETTTTEEEEEETTSCE
T ss_pred EEEEecCCEEEEEECcCCcceeeeccC-CCeEEEEEEcCCCCEEEEECCCCeE
Confidence 456667787 9999999999999999999999975
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-30 Score=219.52 Aligned_cols=242 Identities=13% Similarity=0.088 Sum_probs=185.5
Q ss_pred CceEEEEEeeeCCCCCeEEEEecCCcEEEEecc--ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (326)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~ 128 (326)
...+.++.|. +.+++|++|+.||.|++|++. +++.+..+. .|..+|.++.+.+.. ++..+++
T Consensus 11 ~~~v~~~~~s--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~------~~~~l~s 74 (379)
T 3jrp_A 11 NELIHDAVLD--YYGKRLATCSSDKTIKIFEVEGETHKLIDTLT--------GHEGPVWRVDWAHPK------FGTILAS 74 (379)
T ss_dssp CCCEEEEEEC--SSSSEEEEEETTSCEEEEEEETTEEEEEEEEC--------CCSSCEEEEEECCGG------GCSEEEE
T ss_pred cccEEEEEEc--CCCCEEEEEECCCcEEEEecCCCcceeeeEec--------CCCCcEEEEEeCCCC------CCCEEEE
Confidence 3445555554 456689999999999999997 334433333 566889999875421 2678999
Q ss_pred EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCcee--eeeecCCC
Q 020454 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPP 204 (326)
Q Consensus 129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~~ 204 (326)
++.||.|++|++..... ..+..+ ..+...|.+++|+|+ +++|++++.|+.|++||+++... ...+..
T Consensus 75 ~~~dg~v~iwd~~~~~~------~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-- 145 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGRW------SQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA-- 145 (379)
T ss_dssp EETTSCEEEEEEETTEE------EEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC--
T ss_pred eccCCEEEEEEcCCCce------eEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC--
Confidence 99999999999875321 122222 235678999999999 89999999999999999987643 223333
Q ss_pred CCCCCcCCCCceeeeEEeecC-----------CCcEEEEEeCCCeEEEEeCCCCCC---ceeEEeecCCceEEEEecCC-
Q 020454 205 KNSLGIFTPTWFTSAAFLSID-----------DHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPD- 269 (326)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~p~~-----------~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~i~~v~~s~~- 269 (326)
+...|++++|+|.. ++.+|++++.|+.|++||++.... ....+..|...|++++|+|+
T Consensus 146 -------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 146 -------HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp -------CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred -------CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC
Confidence 23568999999841 356999999999999999986532 33566678999999999999
Q ss_pred --CCeEEEEcCCCcEEEEECCCCe-----EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 270 --SFNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 270 --~~~l~~g~~dg~v~iwd~~~~~-----~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++|++++.||.|++||+++++ .+.....| ...|.+++|+|++++|++++.||.+
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i 280 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKV 280 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEESSSSE
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC-CCcEEEEEEcCCCCEEEEecCCCcE
Confidence 8999999999999999999863 12222235 8899999999999999999999875
No 80
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-31 Score=234.78 Aligned_cols=239 Identities=11% Similarity=0.065 Sum_probs=171.1
Q ss_pred CCeEEEEecCCcEEEEeccccceeeee-cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~ 143 (326)
..+|++++.|++|+||++.+++..... ..+ ..+.+.|..+.+.+... ..++...|++++.||.|++|++...
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l-----~~~~~~V~~v~wsp~~~--~~~~~~~LAs~s~DgtvrlWd~~~~ 245 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI-----VHSFGEVWDLKWHEGCH--APHLVGCLSFVSQEGTINFLEIIDN 245 (524)
T ss_dssp ---------CEEEEEEEEETTTCCEEEEEEE-----EECCCSEEEEEECSSCC--CSSSSCEEEEEETTSCEEEEECCCC
T ss_pred hhhhccCCCCceEEEEEccCCCCCceEEEEE-----EecCCcEEEEEECCCCC--CCCCCceEEEEecCCeEEEEEcCCC
Confidence 345777889999999999776642211 100 03346788888755210 0012468999999999999998754
Q ss_pred ccccc---cccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeee
Q 020454 144 KVSAE---SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSA 219 (326)
Q Consensus 144 ~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~ 219 (326)
..... ........+. .+...|.+++|+++ ..|++|+.|++|++||+++++ +...+..|. ..|+++
T Consensus 246 ~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~---------~~V~sv 314 (524)
T 2j04_B 246 ATDVHVFKMCEKPSLTLS-LADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHD---------SYILSV 314 (524)
T ss_dssp SSSSSEEECCCSCSEEEC-CTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSS---------SCEEEE
T ss_pred ccccccceeecCceEEEE-cCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeeccc---------ccEEEE
Confidence 31100 0011122222 34578999999985 589999999999999998763 333444443 568898
Q ss_pred E--EeecCCC-cEEEEEeCCCeEEEEeCCCCCCceeEEeecCC--ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEE
Q 020454 220 A--FLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET--PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG 294 (326)
Q Consensus 220 ~--~~p~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~ 294 (326)
+ |+| ++ ++|++++.|++|+|||+++. ++...+..|.. .|.+++|+|+++.+++++.|++|++||++++.++.
T Consensus 315 ~~~~s~--~g~~~laS~S~D~tvklWD~~~~-~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~ 391 (524)
T 2j04_B 315 STAYSD--FEDTVVSTVAVDGYFYIFNPKDI-ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH 391 (524)
T ss_dssp EEECCT--TSCCEEEEEETTSEEEEECGGGH-HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE
T ss_pred EEEcCC--CCCeEEEEeccCCeEEEEECCCC-CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce
Confidence 4 444 44 69999999999999999976 44556655543 58899999999999999999999999999999888
Q ss_pred EEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 295 CFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 295 ~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.+.+| .+.|++|+|+|++++|++||.||.+
T Consensus 392 ~l~gH-~~~V~sva~Sp~g~~l~Sgs~Dgtv 421 (524)
T 2j04_B 392 PLVSR-ETTITAIGVSRLHPMVLAGSADGSL 421 (524)
T ss_dssp EEEEC-SSCEEEEECCSSCCBCEEEETTTEE
T ss_pred eeecC-CCceEEEEeCCCCCeEEEEECCCEE
Confidence 88898 9999999999999999999999976
No 81
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.2e-30 Score=223.06 Aligned_cols=245 Identities=7% Similarity=-0.009 Sum_probs=164.1
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
..+|++|+.|++|+|||..+++........ ....|.+.|.++.+.+........++..|++++.|++|++||+....
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~---~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLG---GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEEC---TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeec---ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence 347999999999999999877653321110 11378899999997542211111145689999999999999986543
Q ss_pred cccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCC----------------
Q 020454 145 VSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS---------------- 207 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------- 207 (326)
. ....+ .+...+.+++|+|++ ++|++|+.|++|++||+++++.......+....
T Consensus 178 ~-------~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 248 (393)
T 4gq1_A 178 P-------ILAGY--PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC 248 (393)
T ss_dssp E-------EEEEE--ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred e-------eeeec--CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence 1 22222 346789999999987 589999999999999999876544332211110
Q ss_pred CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEE------------------EEecC-
Q 020454 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA------------------VAEEP- 268 (326)
Q Consensus 208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~------------------v~~s~- 268 (326)
....+...+.++.|.+. +++.+++++.|+++++||+... +....+..+...+.. ..|+|
T Consensus 249 ~~~~~~~~v~~v~~~~~-dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 249 HSSGIASSLANVRWIGS-DGSGILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp ---CCSSSCSEEEEETT-TTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred ecccccccceeeeeecC-CCCEEEEEeCCCCEEEEECccC-CCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 01123456888898853 6779999999999999999865 323333333222222 23333
Q ss_pred -CCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 269 -DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 269 -~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
++.++++|+.||.|++||+.++++...+.+| ..+|++++|+|++++||+++.||.
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~-~~~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQL-GMPIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEEC-SSCEEEEEECTTSSEEEEEESSEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCC-CCcEEEEEEcCCCCEEEEEeCCCe
Confidence 3446678999999999999999988888887 889999999999999999999875
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.9e-30 Score=234.99 Aligned_cols=239 Identities=12% Similarity=0.121 Sum_probs=188.8
Q ss_pred CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce-----eeeecccCCCCCCCCCCCeeeeecccccccccCCCC
Q 020454 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-----RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (326)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 123 (326)
.+...+.++++... ..++|++|+.||+|++|++.+... ...+. .|...|.++.+.+ ++
T Consensus 380 ~H~~~V~~v~~~~~-~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--------~h~~~v~~v~~s~--------~g 442 (694)
T 3dm0_A 380 AHTDMVTAIATPID-NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--------GHSHFVEDVVLSS--------DG 442 (694)
T ss_dssp CCSSCEEEEECCTT-CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--------CCSSCEEEEEECT--------TS
T ss_pred cCCceeEEEEecCC-CCCEEEEEeCCCcEEEEEccCCCcccccccceec--------CCCCcEEEEEECC--------CC
Confidence 34455556665432 345899999999999999875432 12222 5668899888765 66
Q ss_pred ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCC
Q 020454 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (326)
Q Consensus 124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~ 203 (326)
..+++++.||.|++||+.... .++.+. .|...|.+++|+|++++|++|+.|++|++||+............
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~~~--------~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 513 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAAGV--------STRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG 513 (694)
T ss_dssp SEEEEEETTSEEEEEETTTTE--------EEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSST
T ss_pred CEEEEEeCCCcEEEEECCCCc--------ceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCC
Confidence 789999999999999986543 334443 45778999999999999999999999999998755433222111
Q ss_pred CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEE
Q 020454 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (326)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~ 283 (326)
..|..+|.+++|+|......+++++.|++|++||++.. +....+..|...|++++|+|++++|++|+.||.|+
T Consensus 514 ------~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~ 586 (694)
T 3dm0_A 514 ------EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL 586 (694)
T ss_dssp ------TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCE
T ss_pred ------CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 12446799999999644458999999999999999976 66788889999999999999999999999999999
Q ss_pred EEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
+||+++++.+..+.. ...|.+++|+|++.+|++++.+
T Consensus 587 iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~~ 623 (694)
T 3dm0_A 587 LWDLAEGKKLYSLEA--NSVIHALCFSPNRYWLCAATEH 623 (694)
T ss_dssp EEETTTTEEEECCBC--SSCEEEEEECSSSSEEEEEETT
T ss_pred EEECCCCceEEEecC--CCcEEEEEEcCCCcEEEEEcCC
Confidence 999999999887763 5689999999999888877644
No 83
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.1e-30 Score=247.99 Aligned_cols=274 Identities=9% Similarity=0.075 Sum_probs=217.4
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++|+.+|.|++|++.++ +....+.. +...+.++.|. +++++|++|+.||+|++||+.+++.+..+.
T Consensus 628 ~~l~s~~~d~~i~vw~~~~~-----~~~~~~~~--h~~~v~~~~~s--~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-- 696 (1249)
T 3sfz_A 628 QRIASCGADKTLQVFKAETG-----EKLLDIKA--HEDEVLCCAFS--SDDSYIATCSADKKVKIWDSATGKLVHTYD-- 696 (1249)
T ss_dssp SEEEEEETTSCEEEEETTTC-----CEEEEECC--CSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred CEEEEEeCCCeEEEEECCCC-----CEEEEecc--CCCCEEEEEEe--cCCCEEEEEeCCCeEEEEECCCCceEEEEc--
Confidence 46899999999999999887 44445543 34455555554 456699999999999999999998877766
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.+...|.++.+.+.. ....+++++.||.|++|++.... .+..+. .+...|.+++|+|++
T Consensus 697 ------~~~~~v~~~~~~~~~------~~~~l~sg~~d~~v~vwd~~~~~--------~~~~~~-~h~~~v~~~~~sp~~ 755 (1249)
T 3sfz_A 697 ------EHSEQVNCCHFTNKS------NHLLLATGSNDFFLKLWDLNQKE--------CRNTMF-GHTNSVNHCRFSPDD 755 (1249)
T ss_dssp ------CCSSCEEEEEECSSS------SCCEEEEEETTSCEEEEETTSSS--------EEEEEC-CCSSCEEEEEECSST
T ss_pred ------CCCCcEEEEEEecCC------CceEEEEEeCCCeEEEEECCCcc--------hhheec-CCCCCEEEEEEecCC
Confidence 556789888875521 34578899999999999987543 233332 456789999999999
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCC----CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL----GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~ 250 (326)
++|++++.|+.|++||+++++............. .......+.+++|+| ++..+++++ ++.+.+||+.+. ..
T Consensus 756 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--dg~~l~~~~-~~~v~~~d~~~~-~~ 831 (1249)
T 3sfz_A 756 ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA--DGDKIIVAA-KNKVLLFDIHTS-GL 831 (1249)
T ss_dssp TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT--TSSEEEEEE-TTEEEEEETTTC-CE
T ss_pred CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC--CCCEEEEEc-CCcEEEEEecCC-Cc
Confidence 9999999999999999998876655432211100 011223688899998 566777776 789999999987 44
Q ss_pred eeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 251 VMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 251 ~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+..+. .|...|.+++|+|+++++++|+.||.|++||+.+++.+..+.+| .+.|.+++|+|++++|++++.||.+
T Consensus 832 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~~v~~spdg~~l~s~s~dg~v 906 (1249)
T 3sfz_A 832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH-LSWVHGVMFSPDGSSFLTASDDQTI 906 (1249)
T ss_dssp EEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC-ccceEEEEECCCCCEEEEEeCCCeE
Confidence 55554 78899999999999999999999999999999999999999998 9999999999999999999999875
No 84
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.5e-30 Score=251.11 Aligned_cols=276 Identities=13% Similarity=0.233 Sum_probs=222.7
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++++.||.|+|||+.++ +....+..+ ...+.++.|.......++++|+.||.|++||+.+++....+.
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~-----~~~~~~~~~--~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-- 740 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATG-----KLVHTYDEH--SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-- 740 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTC-----CEEEEEECC--SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC--
T ss_pred CEEEEEeCCCeEEEEECCCC-----ceEEEEcCC--CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec--
Confidence 57899999999999999987 555565543 445556677666566789999999999999999888766655
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc----------------------------
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS---------------------------- 146 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~---------------------------- 146 (326)
.|.+.|.++.+.+ ++..+++++.||.|++|++......
T Consensus 741 ------~h~~~v~~~~~sp--------~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 741 ------GHTNSVNHCRFSP--------DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp ------CCSSCEEEEEECS--------STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred ------CCCCCEEEEEEec--------CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 5667899898766 6679999999999999998754210
Q ss_pred -------cccccceEEEEEcc-----------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454 147 -------AESSCSTVKSWNVC-----------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (326)
Q Consensus 147 -------~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 208 (326)
....++.+.+|+.. +...|.+++|+|+++++++++.|+.|++||+.+++.+..+..|.
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~---- 882 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL---- 882 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS----
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc----
Confidence 01123456677653 34568899999999999999999999999999999888877654
Q ss_pred CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC----------------------------cee--------
Q 020454 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR----------------------------PVM-------- 252 (326)
Q Consensus 209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~----------------------------~~~-------- 252 (326)
.+|++++|+| ++++|++++.|+.|++||+..... .+.
T Consensus 883 -----~~v~~v~~sp--dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1249)
T 3sfz_A 883 -----SWVHGVMFSP--DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 955 (1249)
T ss_dssp -----SCEEEEEECT--TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCC
T ss_pred -----cceEEEEECC--CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcce
Confidence 6699999998 566999999999999999653100 000
Q ss_pred EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 253 ~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
........+.+++|+|+++++++|+.+|.|++||+.+++....+.+| ...|++++|+|++++|++++.||.+
T Consensus 956 ~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~dg~i 1027 (1249)
T 3sfz_A 956 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH-KKAVRHIQFTADGKTLISSSEDSVI 1027 (1249)
T ss_dssp EEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCC-SSCCCCEEECSSSSCEEEECSSSBE
T ss_pred EEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccC-CCceEEEEECCCCCEEEEEcCCCEE
Confidence 01123457999999999999999999999999999999999999998 9999999999999999999999875
No 85
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=8.8e-31 Score=227.19 Aligned_cols=258 Identities=12% Similarity=0.154 Sum_probs=192.1
Q ss_pred eeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc---cceeeeecccCCCCCCCCCCCeeeeeccccccc
Q 020454 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN---GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQRE 117 (326)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 117 (326)
+...+. ..+...+.++++... ++++|++|+.||+|++||+.+ +........+ .+...|.++.+.+
T Consensus 54 ~~~~~~-~~h~~~V~~~~~s~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~---- 121 (437)
T 3gre_A 54 LIATLM-ENEPNSITSSAVSPG-ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY------DCSSTVTQITMIP---- 121 (437)
T ss_dssp EEEEEC-TTTTSCEEEEEEECS-SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE------ECSSCEEEEEECT----
T ss_pred EEeeec-cCCCCceEEEEECCC-CCCEEEEecCCceEEEeECcccccCcccceeeec------cCCCCEEEEEEeC----
Confidence 444442 223455666666541 455899999999999999976 3322111111 3457899999765
Q ss_pred ccCCCCceEEEEecCCcEEEEEcccc---ccccccccceEEEEEcc---CCCceEEEE--EcCCCCEEEEecCCCeEEEE
Q 020454 118 ESSSRSRTLLTCTTKGKASMRSIEVT---KVSAESSCSTVKSWNVC---ASGTIAFSK--VDISEKFSLFGGKGVEVNVW 189 (326)
Q Consensus 118 ~~~~~~~~l~~~~~~g~v~i~~~~~~---~~~~~~~~~~~~~~~~~---~~~~v~~~~--~~~~~~~l~sg~~d~~i~iw 189 (326)
+...+++++.||.|++|+++.. ..........++..... ....+.++. +++++++|++|+.|+.|++|
T Consensus 122 ----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 197 (437)
T 3gre_A 122 ----NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIF 197 (437)
T ss_dssp ----TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred ----CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 5678999999999999998632 11111111233333333 456677777 66889999999999999999
Q ss_pred ECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEec-
Q 020454 190 DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEE- 267 (326)
Q Consensus 190 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s- 267 (326)
|+++++.+..+..+. +...|++++|+| ++++|++++.||.|++||++.. +++..+. .+..+|++++|+
T Consensus 198 d~~~~~~~~~~~~~~-------h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 198 DIRTLERLQIIENSP-------RHGAVSSICIDE--ECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQ 267 (437)
T ss_dssp ETTTCCEEEEEECCG-------GGCCEEEEEECT--TSCEEEEEETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECT
T ss_pred eCCCCeeeEEEccCC-------CCCceEEEEECC--CCCEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEecc
Confidence 999999888876621 225699999998 4669999999999999999986 6677776 677799999655
Q ss_pred ---CCCCeEEEEcCCCcEEEEECCCCeEEEEEcce-------------------------ecceEEEEEECCCCCEEEEe
Q 020454 268 ---PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------------------------CSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 268 ---~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-------------------------~~~~v~~l~~~p~~~~l~s~ 319 (326)
|++.+|++|+.||.|++||+++++.+..+.+| +...|++++|+ ++++|++|
T Consensus 268 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~ 346 (437)
T 3gre_A 268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTD 346 (437)
T ss_dssp TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEE
T ss_pred ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEec
Confidence 56889999999999999999999988888754 25668889998 67899999
Q ss_pred ccCccC
Q 020454 320 GFLEAA 325 (326)
Q Consensus 320 s~D~~~ 325 (326)
+.||.+
T Consensus 347 ~~d~~i 352 (437)
T 3gre_A 347 EATSSI 352 (437)
T ss_dssp GGGTEE
T ss_pred CCCCeE
Confidence 999975
No 86
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=2.1e-30 Score=225.24 Aligned_cols=254 Identities=13% Similarity=0.143 Sum_probs=185.3
Q ss_pred CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc-----------eeeeecccCCCCCCCCC------------CCe
Q 020454 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----------LRVAISNAGDSGAQPED------------DGI 106 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~-----------~~~~~~~~~~~~~~~~~------------~~i 106 (326)
+...+.++.|. +++++|++|+.||.|+||++.+++ ....+. .|. ..|
T Consensus 27 ~~~~V~~v~~s--~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 27 EADIISTVEFN--HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ--------SHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp GGGSEEEEEEC--SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE--------CCCCEEEGGGTEEECCCC
T ss_pred ccCcEEEEEEC--CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc--------cccccccccccccccCce
Confidence 34556666665 456799999999999999998665 233333 344 678
Q ss_pred eeeecccccccccCCCCceEEEEecCCcEEEEEccccccccc-----c--------------------------ccceEE
Q 020454 107 VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE-----S--------------------------SCSTVK 155 (326)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~-----~--------------------------~~~~~~ 155 (326)
.++.+.+.. ....+++++.||.|++|++........ . .....+
T Consensus 97 ~~l~~~~~~------~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
T 3dw8_B 97 NKIRWLPQK------NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR 170 (447)
T ss_dssp CEEEECCCC------SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred EEEEEcCCC------CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence 888876521 116899999999999999876332100 0 001123
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe
Q 020454 156 SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (326)
Q Consensus 156 ~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~ 234 (326)
.+...+...|.+++|+|++++|++| .|+.|++||+++.. ....+...... ...+...|++++|+|. ..++|++++
T Consensus 171 ~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~-~~~~l~s~~ 246 (447)
T 3dw8_B 171 IFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPAN--MEELTEVITAAEFHPN-SCNTFVYSS 246 (447)
T ss_dssp EECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSS--GGGCCCCEEEEEECSS-CTTEEEEEE
T ss_pred EeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccc--ccccCcceEEEEECCC-CCcEEEEEe
Confidence 3444567889999999999999998 79999999999543 33322111100 1124467999999984 226999999
Q ss_pred CCCeEEEEeCCCCCC---ceeEEeecCC------------ceEEEEecCCCCeEEEEcCCCcEEEEECCC-CeEEEEEcc
Q 020454 235 NDHQVRLYDTSAQRR---PVMSFDFRET------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIG 298 (326)
Q Consensus 235 ~dg~v~iwd~~~~~~---~~~~~~~~~~------------~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~-~~~~~~~~~ 298 (326)
.||.|++||+++... .+..+..+.. .|.+++|+|++++|++++. +.|++||+++ ++++..+.+
T Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~ 325 (447)
T 3dw8_B 247 SKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQV 325 (447)
T ss_dssp TTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEES
T ss_pred CCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeec
Confidence 999999999997632 1577777765 8999999999999999999 9999999997 888888888
Q ss_pred eecce---------------EEEEEECCCCCEEEEeccCccC
Q 020454 299 KCSGS---------------IRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 299 ~~~~~---------------v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
| ... +..++|+|++++|++++.||.+
T Consensus 326 ~-~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v 366 (447)
T 3dw8_B 326 H-EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFF 366 (447)
T ss_dssp C-GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEE
T ss_pred c-ccccccccccccccccccceEEEECCCCCEEEEeccCCEE
Confidence 7 532 3349999999999999999975
No 87
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.3e-29 Score=216.97 Aligned_cols=247 Identities=10% Similarity=0.064 Sum_probs=189.7
Q ss_pred EEEEEeeeCCCCC-eEEEEecCCcEEEEec----cccc------eeeeecccCCC--CCCCCCCCeeeeecccccccccC
Q 020454 54 VLAASIDDSQNDP-LLAVARKNGLTDILNP----LNGD------LRVAISNAGDS--GAQPEDDGIVGLHLFKRQREESS 120 (326)
Q Consensus 54 ~~~~~~~~~~~~~-~l~~g~~dg~i~i~~~----~~~~------~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~~~~ 120 (326)
+.++.+ ++.++ +|++|+.||.|++|++ .+++ ....+...... ....+.+.|.++.+.+
T Consensus 48 v~~~~~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------- 118 (425)
T 1r5m_A 48 IVSSTW--NPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH------- 118 (425)
T ss_dssp CSEEEE--CSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT-------
T ss_pred eEEEEE--CCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC-------
Confidence 334444 34566 8999999999999999 7777 23333221000 0012456899998766
Q ss_pred CCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee
Q 020454 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (326)
Q Consensus 121 ~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 200 (326)
++..|++++.+|.|++|+... ..+..+. .+...|.+++|+|++++|++++.|+.|++||+++++.+..+
T Consensus 119 -~~~~l~~~~~dg~i~i~~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (425)
T 1r5m_A 119 -DGNSIVTGVENGELRLWNKTG---------ALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF 187 (425)
T ss_dssp -TSSEEEEEETTSCEEEEETTS---------CEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred -CCCEEEEEeCCCeEEEEeCCC---------Ceeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe
Confidence 567899999999999999322 1333333 35678999999999999999999999999999988776655
Q ss_pred cCCCCC---------------C-------------------------------CCc-CCCCceeeeEEeecCCCcEEEEE
Q 020454 201 KPPPKN---------------S-------------------------------LGI-FTPTWFTSAAFLSIDDHRKFVAG 233 (326)
Q Consensus 201 ~~~~~~---------------~-------------------------------~~~-~~~~~v~~~~~~p~~~~~~l~~~ 233 (326)
..+... . ..+ .+...|++++|+| ++++|+++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~ 265 (425)
T 1r5m_A 188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND--TNKLLLSA 265 (425)
T ss_dssp CCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET--TTTEEEEE
T ss_pred eccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC--CCCEEEEE
Confidence 443322 0 001 2456789999998 45699999
Q ss_pred eCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454 234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (326)
Q Consensus 234 ~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~ 313 (326)
+.|+.|++||++.. +++..+..|...|.+++|+|++ ++++++.||.|++||+++++.+..+..| ...|.+++|+|++
T Consensus 266 ~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~ 342 (425)
T 1r5m_A 266 SDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD-GVPIFAGRISQDG 342 (425)
T ss_dssp ETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT-TCCEEEEEECTTS
T ss_pred cCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC-CccEEEEEEcCCC
Confidence 99999999999976 5678888899999999999999 9999999999999999999999999988 9999999999999
Q ss_pred CEEEEeccCccC
Q 020454 314 PIIASCGFLEAA 325 (326)
Q Consensus 314 ~~l~s~s~D~~~ 325 (326)
++|++++.||.+
T Consensus 343 ~~l~~~~~dg~i 354 (425)
T 1r5m_A 343 QKYAVAFMDGQV 354 (425)
T ss_dssp SEEEEEETTSCE
T ss_pred CEEEEEECCCeE
Confidence 999999999875
No 88
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.6e-29 Score=236.53 Aligned_cols=293 Identities=9% Similarity=0.045 Sum_probs=196.4
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCC----------------CCCceEEEEEeeeCCCCCeEEEEecCCcEE
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDP----------------HSSNCVLAASIDDSQNDPLLAVARKNGLTD 78 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~ 78 (326)
..+++|+.+|.| +||+..+ +....+..+ .+...+.+++|. +++.+|++|+.||+|+
T Consensus 165 ~~l~~g~~dg~v-lWd~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs--pdg~~lasgs~Dg~i~ 236 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVEN-----EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH--PNSLHIITIHEDNSLV 236 (902)
T ss_dssp EEEEEECSSCEE-EEETTTT-----EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC--TTSSEEEEEETTCCEE
T ss_pred CEEEEEeCCCcE-EEECCCC-----ceEEEEecccCCcCCCcccccccccccCCCeEEEEEc--CCCCEEEEEECCCeEE
Confidence 478999999999 9999876 333333321 112445566664 4577999999999999
Q ss_pred EEeccccceeee--eccc--CCCC--C-C---CCCCCeeeeecccccccccCCCC-ceEEEEecC-----CcEEEEEccc
Q 020454 79 ILNPLNGDLRVA--ISNA--GDSG--A-Q---PEDDGIVGLHLFKRQREESSSRS-RTLLTCTTK-----GKASMRSIEV 142 (326)
Q Consensus 79 i~~~~~~~~~~~--~~~~--~~~~--~-~---~~~~~i~~l~~~~~~~~~~~~~~-~~l~~~~~~-----g~v~i~~~~~ 142 (326)
+||+.+++.+.. +... +.+. . . .+..+|.++.+..... +++ ..+++++.+ ..+.+|++..
T Consensus 237 lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~----pd~~~ll~sg~~~~~~~~~~v~~~~~~~ 312 (902)
T 2oaj_A 237 FWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENN----PEYTSLLISHKSISRGDNQSLTMIDLGY 312 (902)
T ss_dssp EEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSS----TTEEEEEEEEECSTTSSCCCEEEEEEEE
T ss_pred EEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCC----CCCCEEEEeCCCCCCCCCceEEEEecCC
Confidence 999988876543 2110 0000 0 0 1234677777643211 011 234555444 2566666320
Q ss_pred c-----------------------------c-----------------------cccccccceEEEEEccCC--------
Q 020454 143 T-----------------------------K-----------------------VSAESSCSTVKSWNVCAS-------- 162 (326)
Q Consensus 143 ~-----------------------------~-----------------------~~~~~~~~~~~~~~~~~~-------- 162 (326)
. . ......++.+++|++..+
T Consensus 313 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~ 392 (902)
T 2oaj_A 313 TPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASL 392 (902)
T ss_dssp CCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGG
T ss_pred CCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccccc
Confidence 0 0 011122466777775322
Q ss_pred ---------CceEE----------------------------------EEEcCCCCEEEEecCCCeEEEEECCCceee--
Q 020454 163 ---------GTIAF----------------------------------SKVDISEKFSLFGGKGVEVNVWDLDKCEKI-- 197 (326)
Q Consensus 163 ---------~~v~~----------------------------------~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~-- 197 (326)
..|.+ ++|+|++++|++|+.|++|++||+.++...
T Consensus 393 ~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~ 472 (902)
T 2oaj_A 393 FPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN 472 (902)
T ss_dssp SCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT
T ss_pred CCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC
Confidence 22333 345688999999999999999999876421
Q ss_pred --eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC---------------------------
Q 020454 198 --WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--------------------------- 248 (326)
Q Consensus 198 --~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~--------------------------- 248 (326)
+... . ...+...+...|.+++|+| ++++||+|+.||+|+|||+.+.+
T Consensus 473 ~~~~~~-l-~~~~~~~h~~~V~svafsp--dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (902)
T 2oaj_A 473 ASFEVN-L-SRTLNKAKELAVDKISFAA--ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNG 548 (902)
T ss_dssp BCEEEE-H-HHHTTCSSSCCEEEEEEET--TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSC
T ss_pred ceEEee-c-hhhcCCCCCCceeEEEecC--CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcc
Confidence 1100 0 0000012446799999998 67799999999999999987542
Q ss_pred -----------------CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE-----Ec-ceecceEE
Q 020454 249 -----------------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-----FI-GKCSGSIR 305 (326)
Q Consensus 249 -----------------~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~-----~~-~~~~~~v~ 305 (326)
+++..+..|...|++++|+|+| +||+|+.|++|++||++++..++. +. +| .+.|+
T Consensus 549 ~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh-~~~V~ 626 (902)
T 2oaj_A 549 VLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ-SACVT 626 (902)
T ss_dssp SEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC-CCCEE
T ss_pred ccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc-ccceE
Confidence 1356677899999999999999 999999999999999998877642 22 67 88999
Q ss_pred EEEEC-----CCC---CEEEEeccCccC
Q 020454 306 SIARH-----PTL---PIIASCGFLEAA 325 (326)
Q Consensus 306 ~l~~~-----p~~---~~l~s~s~D~~~ 325 (326)
+|+|+ ||+ ++|++++.|+++
T Consensus 627 sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv 654 (902)
T 2oaj_A 627 CIEFVIMEYGDDGYSSILMVCGTDMGEV 654 (902)
T ss_dssp EEEEEEEECTTSSSEEEEEEEEETTSEE
T ss_pred EEEEEEEecCCCCCcceEEEEEecCCcE
Confidence 99999 885 899999999975
No 89
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.9e-29 Score=213.35 Aligned_cols=242 Identities=15% Similarity=0.170 Sum_probs=194.4
Q ss_pred CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~ 129 (326)
+...+.++++. +.+++|++|+.||.|++||+.+++.+..+. .+...|.++.+.+ ++..++++
T Consensus 31 h~~~v~~~~~s--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~~~--------~~~~l~s~ 92 (369)
T 3zwl_B 31 HERPLTQVKYN--KEGDLLFSCSKDSSASVWYSLNGERLGTLD--------GHTGTIWSIDVDC--------FTKYCVTG 92 (369)
T ss_dssp CSSCEEEEEEC--TTSCEEEEEESSSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECT--------TSSEEEEE
T ss_pred eeceEEEEEEc--CCCCEEEEEeCCCEEEEEeCCCchhhhhhh--------hcCCcEEEEEEcC--------CCCEEEEE
Confidence 34445555554 456699999999999999999888777665 5567899998765 56789999
Q ss_pred ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC-----CeEEEEECCCceeeeeecCCC
Q 020454 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPP 204 (326)
Q Consensus 130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~ 204 (326)
+.||.|++|++.... .+..+. +...+.+++|+|++++|++++.+ +.|++||+.............
T Consensus 93 ~~dg~i~iwd~~~~~--------~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 162 (369)
T 3zwl_B 93 SADYSIKLWDVSNGQ--------CVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS 162 (369)
T ss_dssp ETTTEEEEEETTTCC--------EEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred eCCCeEEEEECCCCc--------EEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc
Confidence 999999999987543 444444 56789999999999999999999 999999998754322211111
Q ss_pred CCCC--CcCCC--CceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC
Q 020454 205 KNSL--GIFTP--TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (326)
Q Consensus 205 ~~~~--~~~~~--~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg 280 (326)
.... ...+. ..+.+++|+| ++++|++++.||.|++||+++...++..+..|...|.+++|+|++++|++++.||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 240 (369)
T 3zwl_B 163 EEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT 240 (369)
T ss_dssp SSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCc
Confidence 0000 00111 2689999998 4569999999999999999984467888888999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 281 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
.|++||+++++.+..+. + ...+..++|+|+++++++++.|+
T Consensus 241 ~i~v~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 241 NSFLVDVSTLQVLKKYE-T-DCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp EEEEEETTTCCEEEEEE-C-SSCEEEEEECSSSSEEEEEECCC
T ss_pred eEEEEECCCCceeeeec-C-CCCceeEEecCCCceEEEeecCC
Confidence 99999999999998888 4 78999999999999999999887
No 90
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=4.6e-29 Score=208.95 Aligned_cols=268 Identities=10% Similarity=0.078 Sum_probs=191.4
Q ss_pred eecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeee--ecccCC
Q 020454 19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA--ISNAGD 96 (326)
Q Consensus 19 ~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~--~~~~~~ 96 (326)
+|.+.|...++-.... .+...+..++. .+...|.+++|.++ .+++|++|+.||+|+|||+.+.+.... ...+
T Consensus 9 ~g~d~g~~~~~~~~~~-~~~~~l~~tL~--GH~~~V~~v~~sp~-~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-- 82 (340)
T 4aow_A 9 SGVDLGTENLYFQSMM-TEQMTLRGTLK--GHNGWVTQIATTPQ-FPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-- 82 (340)
T ss_dssp ------------------CEEEEEEEEC--CCSSCEEEEEECTT-CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE--
T ss_pred cccCCCCccEEEEEcc-CCceEEEEEEC--CccCCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCCCcccceeeEEE--
Confidence 4555565443322211 12223333443 45556666666432 245899999999999999976543221 1111
Q ss_pred CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCE
Q 020454 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (326)
Q Consensus 97 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 176 (326)
..|...|.++.+.+ ++..+++++.|+.+++|+..... .... .......+..+.+++++++
T Consensus 83 ---~~h~~~V~~~~~s~--------dg~~l~s~~~d~~i~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~ 142 (340)
T 4aow_A 83 ---RGHSHFVSDVVISS--------DGQFALSGSWDGTLRLWDLTTGT--------TTRR-FVGHTKDVLSVAFSSDNRQ 142 (340)
T ss_dssp ---CCCSSCEEEEEECT--------TSSEEEEEETTSEEEEEETTTTE--------EEEE-EECCSSCEEEEEECTTSSC
T ss_pred ---eCCCCCEEEEEECC--------CCCEEEEEcccccceEEeecccc--------eeee-ecCCCCceeEEEEeecCcc
Confidence 25668899998765 66789999999999999976543 2222 2234567888899999999
Q ss_pred EEEecCCCeEEEEECCCceeeee-ecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe
Q 020454 177 SLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD 255 (326)
Q Consensus 177 l~sg~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 255 (326)
|++|+.|+.+++||+........ ... +...+..++|++.....++++++.|+.|++||+++. +.+..+.
T Consensus 143 l~s~s~d~~~~~~d~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~ 212 (340)
T 4aow_A 143 IVSGSRDKTIKLWNTLGVCKYTVQDES---------HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHI 212 (340)
T ss_dssp EEEEETTSCEEEECTTSCEEEEECSSS---------CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEEC
T ss_pred ceeecCCCeEEEEEeCCCceEEEEecc---------ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEec
Confidence 99999999999999986554332 222 235688899988766668899999999999999987 6678888
Q ss_pred ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 256 ~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.|..+|++++|+|++++|++|+.||.|++||+++.+.+..+.. ...|.++.|+|++.++ +++.|+.+
T Consensus 213 ~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~-~~~~d~~i 279 (340)
T 4aow_A 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINALCFSPNRYWL-CAATGPSI 279 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC--SSCEEEEEECSSSSEE-EEEETTEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC--CceEEeeecCCCCcee-eccCCCEE
Confidence 9999999999999999999999999999999999999988885 5689999999987654 56667754
No 91
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.2e-29 Score=212.82 Aligned_cols=256 Identities=9% Similarity=0.019 Sum_probs=186.3
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce-------
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL------- 87 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~------- 87 (326)
-.|++++.||.|++|++..+ ....+....+. .+...+.+++|....++.+|++|+.||.|++||+.+++.
T Consensus 24 ~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~--~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 100 (351)
T 3f3f_A 24 RHVATCSSDQHIKVFKLDKD-TSNWELSDSWR--AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRW 100 (351)
T ss_dssp SEEEEEETTSEEEEEEECSS-SCCEEEEEEEE--CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSE
T ss_pred CEEEEeeCCCeEEEEECCCC-CCcceecceec--cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCc
Confidence 56999999999999999876 33333433443 344456666665433466899999999999999987632
Q ss_pred --eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccc-cceEEE---EEccC
Q 020454 88 --RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS-CSTVKS---WNVCA 161 (326)
Q Consensus 88 --~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~-~~~~~~---~~~~~ 161 (326)
...+. .+...|.++.+.+.. .+..+++++.||.|++||+.......... ...+.. ....+
T Consensus 101 ~~~~~~~--------~~~~~v~~~~~~~~~------~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 101 NKLCTLN--------DSKGSLYSVKFAPAH------LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp EEEEEEC--------CCSSCEEEEEECCGG------GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred ceeeeec--------ccCCceeEEEEcCCC------CCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence 22222 556789989876521 16789999999999999987654221110 001111 11134
Q ss_pred CCceEEEEEcCC---CCEEEEecCCCeEEEEECCCcee--eeeecCCCCCCCCcCCCCceeeeEEeecCCC--cEEEEEe
Q 020454 162 SGTIAFSKVDIS---EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH--RKFVAGT 234 (326)
Q Consensus 162 ~~~v~~~~~~~~---~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~~l~~~~ 234 (326)
...+.+++|+|+ +.+|++++.|+.+.+|+...++. +..+..| ...|++++|+|.... ++|++++
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h---------~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH---------KSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC---------CSCEEEEEECCCSSCSSEEEEEEE
T ss_pred ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC---------CcceeEEEECCCCCCcceEEEEEc
Confidence 567999999997 89999999999998888877654 4444443 356999999985211 6999999
Q ss_pred CCCeEEEEeCCCCC---------------------------------------------CceeEEeecCCceEEEEecCC
Q 020454 235 NDHQVRLYDTSAQR---------------------------------------------RPVMSFDFRETPIKAVAEEPD 269 (326)
Q Consensus 235 ~dg~v~iwd~~~~~---------------------------------------------~~~~~~~~~~~~i~~v~~s~~ 269 (326)
.||.|++||++... +++..+..|...|++++|+|+
T Consensus 238 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 317 (351)
T 3f3f_A 238 KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT 317 (351)
T ss_dssp TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence 99999999988631 234556678899999999999
Q ss_pred CCeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454 270 SFNIYIGNGSGDLASVDIRTGKLLGCF 296 (326)
Q Consensus 270 ~~~l~~g~~dg~v~iwd~~~~~~~~~~ 296 (326)
+++|++|+.||.|++||+.+++.+..+
T Consensus 318 ~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 318 GTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp SCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred CCEEEEecCCCcEEEEecCcCcchhhe
Confidence 999999999999999999987655443
No 92
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=4.1e-29 Score=232.81 Aligned_cols=236 Identities=16% Similarity=0.199 Sum_probs=196.4
Q ss_pred CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (326)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~ 130 (326)
...+.+++| ++++++|++|+.||.|++||+.+++.+..+. .+.++|.++.+.+ ++..|++++
T Consensus 13 ~~~v~~i~~--sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~--------~~~~l~~~~ 74 (814)
T 3mkq_A 13 SDRVKGIDF--HPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ--------VTETPVRAGKFIA--------RKNWIIVGS 74 (814)
T ss_dssp CSCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------CCSSCEEEEEEEG--------GGTEEEEEE
T ss_pred CCceEEEEE--CCCCCEEEEEeCCCEEEEEECCCCceEEEEe--------cCCCcEEEEEEeC--------CCCEEEEEe
Confidence 334445555 4566799999999999999998888777666 4557899999866 567899999
Q ss_pred cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCc-eeeeeecCCCCCCCC
Q 020454 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLG 209 (326)
Q Consensus 131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~ 209 (326)
.||.|++|++.... .+..+. .+...|.+++|+|++++|++++.|+.|++||++++ .....+..|.
T Consensus 75 ~dg~i~vw~~~~~~--------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~----- 140 (814)
T 3mkq_A 75 DDFRIRVFNYNTGE--------KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE----- 140 (814)
T ss_dssp TTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCS-----
T ss_pred CCCeEEEEECCCCc--------EEEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCC-----
Confidence 99999999987543 344443 35678999999999999999999999999999886 4455554443
Q ss_pred cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC-CceEEEEecC--CCCeEEEEcCCCcEEEEE
Q 020454 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEP--DSFNIYIGNGSGDLASVD 286 (326)
Q Consensus 210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~i~~v~~s~--~~~~l~~g~~dg~v~iwd 286 (326)
..|.+++|+|. ++..|++++.||.|++||++.. .+...+..+. ..+..++|+| ++.+|++|+.||.|++||
T Consensus 141 ----~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d 214 (814)
T 3mkq_A 141 ----HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQS-TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214 (814)
T ss_dssp ----SCEEEEEEETT-EEEEEEEEETTSEEEEEETTCS-SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred ----CcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 56899999983 3559999999999999999876 4455555544 8899999999 899999999999999999
Q ss_pred CCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 287 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++++.+..+.+| ...|.+++|+|++++|++++.||.+
T Consensus 215 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~v 252 (814)
T 3mkq_A 215 YQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDGTL 252 (814)
T ss_dssp TTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCE
T ss_pred CCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCeE
Confidence 9999999999998 9999999999999999999999875
No 93
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-29 Score=213.67 Aligned_cols=243 Identities=13% Similarity=0.116 Sum_probs=179.5
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.|++++.+|.|+||++... ..+....+. .+...+.++.|.....+.+|++|+.||.|++||+.+++.......
T Consensus 24 ~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~- 97 (379)
T 3jrp_A 24 KRLATCSSDKTIKIFEVEGE---THKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH- 97 (379)
T ss_dssp SEEEEEETTSCEEEEEEETT---EEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-
T ss_pred CEEEEEECCCcEEEEecCCC---cceeeeEec--CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-
Confidence 57899999999999999843 113333443 334456666665554467999999999999999988763222222
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC--
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-- 172 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 172 (326)
..+...|.++.+.+.. .+..+++++.||.|++|++...... ..... ..+...|.+++|+|
T Consensus 98 -----~~~~~~v~~~~~~~~~------~~~~l~~~~~d~~i~v~d~~~~~~~------~~~~~-~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 98 -----AVHSASVNSVQWAPHE------YGPLLLVASSDGKVSVVEFKENGTT------SPIII-DAHAIGVNSASWAPAT 159 (379)
T ss_dssp -----CCCSSCEEEEEECCGG------GCSEEEEEETTSEEEEEECCTTSCC------CEEEE-ECCTTCEEEEEECCCC
T ss_pred -----cCCCcceEEEEeCCCC------CCCEEEEecCCCcEEEEecCCCCce------eeEEe-cCCCCceEEEEEcCcc
Confidence 1455789999876521 1578999999999999998764311 11122 24567899999999
Q ss_pred -----------CCCEEEEecCCCeEEEEECCCcee----eeeecCCCCCCCCcCCCCceeeeEEeecCC-CcEEEEEeCC
Q 020454 173 -----------SEKFSLFGGKGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTND 236 (326)
Q Consensus 173 -----------~~~~l~sg~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~~l~~~~~d 236 (326)
++++|++++.|+.|++||+++++. ...+..| ...|++++|+|... +++|++++.|
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h---------~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH---------SDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC---------SSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc---------cCcEeEEEECCCCCCCCeEEEEeCC
Confidence 689999999999999999987543 2333333 35699999998410 6799999999
Q ss_pred CeEEEEeCCCCCCcee----EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454 237 HQVRLYDTSAQRRPVM----SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 237 g~v~iwd~~~~~~~~~----~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~ 290 (326)
|.|++||++....+.. ....+...|++++|+|++++|++++.||.|++|++..+
T Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 9999999987532211 12237789999999999999999999999999999843
No 94
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=8.9e-30 Score=220.75 Aligned_cols=235 Identities=14% Similarity=0.156 Sum_probs=177.2
Q ss_pred ceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (326)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~ 131 (326)
..+.+++|.+. ...+||+|+.||+|+|||+.+++....+.. ..|.+.|.++.+.+. ++..|++++.
T Consensus 120 ~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~~~~~~~~~~~~------~gH~~~V~~l~f~p~-------~~~~l~s~s~ 185 (435)
T 4e54_B 120 RRATSLAWHPT-HPSTVAVGSKGGDIMLWNFGIKDKPTFIKG------IGAGGSITGLKFNPL-------NTNQFYASSM 185 (435)
T ss_dssp SCEEEEEECSS-CTTCEEEEETTSCEEEECSSCCSCCEEECC------CSSSCCCCEEEECSS-------CTTEEEEECS
T ss_pred CCEEEEEEeCC-CCCEEEEEeCCCEEEEEECCCCCceeEEEc------cCCCCCEEEEEEeCC-------CCCEEEEEeC
Confidence 34556666432 345899999999999999987765444443 267789999997541 3568999999
Q ss_pred CCcEEEEEccccccccccccceEEEEEcc--CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454 132 KGKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG 209 (326)
Q Consensus 132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 209 (326)
||.|++||++.. .++.+... ....+.+++++|++++|++|+.|+.|++||++. +.+..+..|
T Consensus 186 D~~v~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h------ 249 (435)
T 4e54_B 186 EGTTRLQDFKGN---------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMH------ 249 (435)
T ss_dssp SSCEEEEETTSC---------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCC------
T ss_pred CCEEEEeeccCC---------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecc------
Confidence 999999998643 22233222 233578899999999999999999999999864 344444443
Q ss_pred cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC--ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (326)
Q Consensus 210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~ 287 (326)
...|++++|+|. ...+|++++.|+.|++||++..+. .+.....|...|++++|+|+|++|++|+.||.|++||+
T Consensus 250 ---~~~v~~v~~~p~-~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 250 ---KKKVTHVALNPC-CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp ---SSCEEEEEECTT-CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEES
T ss_pred ---cceEEeeeecCC-CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEEC
Confidence 367999999985 344889999999999999986532 12233468889999999999999999999999999999
Q ss_pred CCCeEEEEEcceecc------eEEEEEECCCCCEEEEecc
Q 020454 288 RTGKLLGCFIGKCSG------SIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 288 ~~~~~~~~~~~~~~~------~v~~l~~~p~~~~l~s~s~ 321 (326)
++++....+..| .. .+....|+|++.++++++.
T Consensus 326 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (435)
T 4e54_B 326 SQWDCPLGLIPH-PHRHFQHLTPIKAAWHPRYNLIVVGRY 364 (435)
T ss_dssp SSSSSEEEECCC-CCCCCSSSCCCBCEECSSSSCEEEECC
T ss_pred CCCccceEEecc-cccccccceeEEEEEcCCCCEEEEEEc
Confidence 999888777665 32 2345678888887777654
No 95
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=6.6e-30 Score=216.08 Aligned_cols=249 Identities=11% Similarity=0.056 Sum_probs=193.1
Q ss_pred CCCceEEEEEeeeC--CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE
Q 020454 49 HSSNCVLAASIDDS--QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (326)
Q Consensus 49 ~~~~~~~~~~~~~~--~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l 126 (326)
.+...+.++.+.+. ....++++++.++.|++||+.+++.+..+..+... .+...|.++.+.+... ..+..+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~----~~~~~l 88 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA---DADENFYTCAWTYDSN----TSHPLL 88 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS---CTTCCEEEEEEEECTT----TCCEEE
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc---CCCCcEEEEEeccCCC----CCCCEE
Confidence 34555666666643 23456888888889999999888776666543221 3557899888765211 014589
Q ss_pred EEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCceeeeeecCCCC
Q 020454 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK 205 (326)
Q Consensus 127 ~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~ 205 (326)
++++.||.|++|++.... .+..+. .+...|.+++|+| ++++|++|+.|+.|++||+++++.+..+....
T Consensus 89 ~~~~~dg~i~v~d~~~~~--------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 158 (366)
T 3k26_A 89 AVAGSRGIIRIINPITMQ--------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE- 158 (366)
T ss_dssp EEEETTCEEEEECTTTCC--------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT-
T ss_pred EEecCCCEEEEEEchhce--------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc-
Confidence 999999999999987543 344444 3578999999999 89999999999999999999998877763211
Q ss_pred CCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE----------------------------Eeec
Q 020454 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS----------------------------FDFR 257 (326)
Q Consensus 206 ~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~----------------------------~~~~ 257 (326)
.+...|.+++|+| ++++|++++.||.|++||+++. +.... ...|
T Consensus 159 -----~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 159 -----GHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp -----SCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred -----cccCceeEEEECC--CCCEEEEecCCCCEEEEECCCC-ccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 1235799999998 5669999999999999999865 22222 2238
Q ss_pred CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe--------------EEEEEcceecceEEEEEECCC--CCEEEEecc
Q 020454 258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--------------LLGCFIGKCSGSIRSIARHPT--LPIIASCGF 321 (326)
Q Consensus 258 ~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~--------------~~~~~~~~~~~~v~~l~~~p~--~~~l~s~s~ 321 (326)
...|.+++|+ +++|++++.||.|++||+++++ .+..+.+| ...|++++|+|+ +++|++++.
T Consensus 231 ~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 231 RNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS-QCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp SSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS-SCCSSCCCCEECTTSSEEEEECT
T ss_pred cceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc-CCcEEEEEEcCCCCCcEEEEEec
Confidence 8899999998 7799999999999999998763 47788888 999999999999 999999999
Q ss_pred CccC
Q 020454 322 LEAA 325 (326)
Q Consensus 322 D~~~ 325 (326)
||.+
T Consensus 308 dg~i 311 (366)
T 3k26_A 308 VGKL 311 (366)
T ss_dssp TSCE
T ss_pred CCcE
Confidence 9975
No 96
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.8e-28 Score=199.46 Aligned_cols=266 Identities=11% Similarity=0.029 Sum_probs=171.4
Q ss_pred CCcceeeeccCCCCCceEEEEE-eeeCCC--CCeEEEEecCCcEEEEecccc---ceeeeecccCCCCCCCCCCCeeeee
Q 020454 37 GVPKVVERWGDPHSSNCVLAAS-IDDSQN--DPLLAVARKNGLTDILNPLNG---DLRVAISNAGDSGAQPEDDGIVGLH 110 (326)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~l~~g~~dg~i~i~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~ 110 (326)
+...++.++.++.. .+.+.+| .-|... ....++......|++|+..++ +.+...+. ++.+|..+.
T Consensus 23 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~--------~~~~v~~~~ 93 (356)
T 2w18_A 23 GNLQLVSELKNPSG-SCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHF--------AEVPVLQIV 93 (356)
T ss_dssp -CEEEEEEECCCCS-SCEEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEEC--------CSSCEEEEC
T ss_pred ceeeeeehhcCCCC-CeEEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEec--------cCceeEEEE
Confidence 44455666666633 3333333 222222 223444555689999999887 44444442 223333333
Q ss_pred ccc----------------ccc-cccCCC----CceEEEEecCCcEEEEEcccccccccc---ccceEEEEEccCCCc--
Q 020454 111 LFK----------------RQR-EESSSR----SRTLLTCTTKGKASMRSIEVTKVSAES---SCSTVKSWNVCASGT-- 164 (326)
Q Consensus 111 ~~~----------------~~~-~~~~~~----~~~l~~~~~~g~v~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~-- 164 (326)
+.+ .-+ ...+++ ...+++++. .+.+|++........+ .++.+++|++...+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~ 171 (356)
T 2w18_A 94 PVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGK 171 (356)
T ss_dssp CCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEE
T ss_pred EcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCcee
Confidence 322 000 111223 445566553 3778888665543332 588999999855332
Q ss_pred ---------eEEEEEcC---CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE--
Q 020454 165 ---------IAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-- 230 (326)
Q Consensus 165 ---------v~~~~~~~---~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-- 230 (326)
+..++|++ ++.+|++|+.|++|+|||+++++.+..+..+.... ..+.+++|+| ++.++
T Consensus 172 ~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v------~~v~~vafSp--dG~~lvs 243 (356)
T 2w18_A 172 ENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ------ASVCHKAYSE--MGLLFIV 243 (356)
T ss_dssp EEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---------CCCEEEEEEE--TTEEEEE
T ss_pred eeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce------eeeEEEEECC--CCCEEEE
Confidence 44677777 67999999999999999999999988887543221 3577888998 45554
Q ss_pred ----------EEEeCCCeEEEEeCCCCCCceeEE-----eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE
Q 020454 231 ----------VAGTNDHQVRLYDTSAQRRPVMSF-----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC 295 (326)
Q Consensus 231 ----------~~~~~dg~v~iwd~~~~~~~~~~~-----~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~ 295 (326)
++|+.|++|++||+.++ +.+..+ .+|...+.+..+ ++.++++|+.|++|+|||+++++++++
T Consensus 244 ~s~~~~~w~laSGs~D~tIklWd~~tg-k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~t 320 (356)
T 2w18_A 244 LSHPCAKESESLRSPVFQLIVINPKTT-LSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTAL 320 (356)
T ss_dssp EC------------CCEEEEEEETTTT-EEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEE
T ss_pred eccCCCcceeeccCCCcEEEEEECCCC-EEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 66889999999999977 444443 234444444444 478899999999999999999999999
Q ss_pred EcceecceEE-EEEECCCCCEEEEeccCccC
Q 020454 296 FIGKCSGSIR-SIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 296 ~~~~~~~~v~-~l~~~p~~~~l~s~s~D~~~ 325 (326)
+.+| ...+. .++|+|++++|+|||.|+++
T Consensus 321 L~gH-~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 321 LPPV-SDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp ECCC---CCCCEEEECSSSSEEEEECTTSCE
T ss_pred ecCC-CCCeEEEEEECCCCCEEEEEECCCcE
Confidence 9998 66554 69999999999999999986
No 97
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=5.4e-29 Score=209.86 Aligned_cols=245 Identities=10% Similarity=0.073 Sum_probs=178.7
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEee----eCCCCCeEEEEecCCcEEEEeccccc-eee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID----DSQNDPLLAVARKNGLTDILNPLNGD-LRV 89 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~g~~dg~i~i~~~~~~~-~~~ 89 (326)
..+++++.+|.|++|++..+ .. ....+.. +...+.++.+. .++++++|++++.||.|++||+.+++ .+.
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~-~~---~~~~~~~--~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAP-EM---PVYSVKG--HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp CCEEEEETTSCEEEECTTSC-SS---CSEEECC--CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred ceEEEecCCCeEEEEeCCCC-Cc---cEEEEEe--cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 67999999999999999876 10 2233433 33444455443 35677799999999999999998776 444
Q ss_pred eecccCCCCCCCCCCCeeeeec---ccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceE
Q 020454 90 AISNAGDSGAQPEDDGIVGLHL---FKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~l~~---~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 166 (326)
.+.... ......+.++.+ +. +++..+++++.+|.|++|++.... . .+...+...|.
T Consensus 155 ~~~~~~----~~~~~~v~~~~~~~~~~-------~~~~~l~~~~~d~~i~i~d~~~~~--------~--~~~~~~~~~v~ 213 (357)
T 3i2n_A 155 NMEPVQ----GENKRDCWTVAFGNAYN-------QEERVVCAGYDNGDIKLFDLRNMA--------L--RWETNIKNGVC 213 (357)
T ss_dssp EECCCT----TSCCCCEEEEEEECCCC--------CCCEEEEEETTSEEEEEETTTTE--------E--EEEEECSSCEE
T ss_pred eccccC----CCCCCceEEEEEEeccC-------CCCCEEEEEccCCeEEEEECccCc--------e--eeecCCCCceE
Confidence 444211 011346776663 22 156789999999999999987543 1 22234567899
Q ss_pred EEEEcC---CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc-EEEEEeCCCeEEEE
Q 020454 167 FSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLY 242 (326)
Q Consensus 167 ~~~~~~---~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-~l~~~~~dg~v~iw 242 (326)
+++|+| ++++|++++.|+.|++||+++++....+.... ...+...|++++|+| ++. +|++++.||.|++|
T Consensus 214 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 214 SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS----EKAHKSTVWQVRHLP--QNRELFLTAGGAGGLHLW 287 (357)
T ss_dssp EEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE----EECCSSCEEEEEEET--TEEEEEEEEETTSEEEEE
T ss_pred EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec----cCCCcCCEEEEEECC--CCCcEEEEEeCCCcEEEe
Confidence 999999 89999999999999999998876554433000 001235699999998 454 79999999999999
Q ss_pred eCCCCCC------------------ceeEEeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeE
Q 020454 243 DTSAQRR------------------PVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 243 d~~~~~~------------------~~~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~ 292 (326)
|++.... .+..+..|...|++++|+|++++|+ +|+.||.|++||+.+.+.
T Consensus 288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 9875422 3566778999999999999999998 899999999999987654
No 98
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1e-28 Score=215.89 Aligned_cols=227 Identities=11% Similarity=0.148 Sum_probs=181.1
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
+++|++|+.||+|++||+.+++.+..+. .|.+.|.++.+.+ ++.+++++.||.|++|+++...
T Consensus 132 ~~~l~sgs~dg~i~vwd~~~~~~~~~~~--------~h~~~V~~l~~~~---------~~~l~s~s~dg~i~vwd~~~~~ 194 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSINKKFLLQLS--------GHDGGVWALKYAH---------GGILVSGSTDRTVRVWDIKKGC 194 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECS---------TTEEEEEETTSCEEEEETTTTE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEe--------CCCcCEEEEEEcC---------CCEEEEEeCCCCEEEEECCCCc
Confidence 3489999999999999999988777665 5668999998743 3489999999999999987543
Q ss_pred cccccccceEEEEEccCCCceEEEEEc--CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCC--------------C
Q 020454 145 VSAESSCSTVKSWNVCASGTIAFSKVD--ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS--------------L 208 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------~ 208 (326)
.+..+. .+...|.+++++ +++++|++|+.|+.|++||+++.+............ .
T Consensus 195 --------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 195 --------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp --------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred --------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 344443 357789999998 577999999999999999998765432211100000 0
Q ss_pred CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
...+...|.++ ++ +++++++++.|+.|++||+++. +++..+..|...|.+++|+|+++++++|+.||.|++||++
T Consensus 266 ~~~~~~~v~~~--~~--~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 340 (464)
T 3v7d_B 266 LRGHMASVRTV--SG--HGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340 (464)
T ss_dssp ECCCSSCEEEE--EE--ETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ccCccceEEEE--cC--CCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 01122445555 34 3559999999999999999977 6788888999999999999999999999999999999999
Q ss_pred CCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 289 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++++..+.+| ...|.+++|+ +.+|++++.||.+
T Consensus 341 ~~~~~~~~~~h-~~~v~~~~~~--~~~l~s~s~dg~v 374 (464)
T 3v7d_B 341 NGELMYTLQGH-TALVGLLRLS--DKFLVSAAADGSI 374 (464)
T ss_dssp TTEEEEEECCC-SSCEEEEEEC--SSEEEEEETTSEE
T ss_pred CCcEEEEEeCC-CCcEEEEEEc--CCEEEEEeCCCcE
Confidence 99999999998 9999999997 5799999999975
No 99
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-28 Score=212.56 Aligned_cols=232 Identities=8% Similarity=0.034 Sum_probs=176.4
Q ss_pred EEEEEeeeCCCCCeE-EEEecCCcEEEEecc--ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454 54 VLAASIDDSQNDPLL-AVARKNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (326)
Q Consensus 54 ~~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~ 130 (326)
+.++.| ++.+++| ++|+.||.|++||+. +++.+..+... .+...+.++.+.+ ++..|++++
T Consensus 105 v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~~sp--------~~~~l~~~~ 168 (450)
T 2vdu_B 105 IRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF------CFSKRPNAISIAE--------DDTTVIIAD 168 (450)
T ss_dssp EEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE------ECSSCEEEEEECT--------TSSEEEEEE
T ss_pred eEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc------cCCCCceEEEEcC--------CCCEEEEEe
Confidence 444444 4556675 889999999999998 77776666531 2346788888765 567899999
Q ss_pred cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC---CCEEEEecCCCeEEEEECCCceeeee-ecCCCCC
Q 020454 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS---EKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKN 206 (326)
Q Consensus 131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~~~~~ 206 (326)
.+|.+++|++........ .+..+. .+...|.+++|+|+ +++|++|+.|+.|++||+++++.+.. ...|
T Consensus 169 ~~g~v~~~~~~~~~~~~~----~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h--- 240 (450)
T 2vdu_B 169 KFGDVYSIDINSIPEEKF----TQEPIL-GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH--- 240 (450)
T ss_dssp TTSEEEEEETTSCCCSSC----CCCCSE-ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC---
T ss_pred CCCcEEEEecCCcccccc----cceeee-cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC---
Confidence 999999999865432110 000111 24578999999999 89999999999999999998877665 3333
Q ss_pred CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee-------------------------cCCce
Q 020454 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-------------------------RETPI 261 (326)
Q Consensus 207 ~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------------------------~~~~i 261 (326)
..+|++++|+ ++++|++++.|+.|++||++++ +.+..+.. ....+
T Consensus 241 ------~~~v~~~~~s---d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 241 ------KHFVSSICCG---KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV 310 (450)
T ss_dssp ------SSCEEEEEEC---STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred ------CCceEEEEEC---CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence 3679999998 4569999999999999999987 55666652 23578
Q ss_pred EEEEecCCCCeEEEEc-CCCcEEEEEC--CCC---eEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454 262 KAVAEEPDSFNIYIGN-GSGDLASVDI--RTG---KLLGCFIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 262 ~~v~~s~~~~~l~~g~-~dg~v~iwd~--~~~---~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
..++|+|++++|++++ .++.|++|++ .++ +.+..+..| +.|.+++|+|++.+++.++.
T Consensus 311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~~ 374 (450)
T 2vdu_B 311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDNK 374 (450)
T ss_dssp EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECCT
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEecc
Confidence 9999999999999888 8999999999 565 667777764 78999999996544444443
No 100
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=7.3e-29 Score=211.42 Aligned_cols=237 Identities=14% Similarity=0.126 Sum_probs=181.3
Q ss_pred CCceEEEEEeeeCCCC-CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454 50 SSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~ 128 (326)
+...+.++.|.. .+ ++|++|+.||.|++||+.+++....+.. ..+...|.++.+.+. +...+++
T Consensus 72 h~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~h~~~v~~~~~~~~-------~~~~l~s 136 (383)
T 3ei3_B 72 FDRRVTSLEWHP--THPTTVAVGSKGGDIILWDYDVQNKTSFIQG------MGPGDAITGMKFNQF-------NTNQLFV 136 (383)
T ss_dssp CSSCEEEEEECS--SCTTEEEEEEBTSCEEEEETTSTTCEEEECC------CSTTCBEEEEEEETT-------EEEEEEE
T ss_pred CCCCEEEEEECC--CCCCEEEEEcCCCeEEEEeCCCcccceeeec------CCcCCceeEEEeCCC-------CCCEEEE
Confidence 344555565543 34 6899999999999999988877666543 256689999987541 2368999
Q ss_pred EecCCcEEEEEccccccccccccceEEEEEccC--CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCC
Q 020454 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (326)
Q Consensus 129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~ 206 (326)
++.|+.|++|++... .+..+.... ...|.+++|+|++++|++|+.|+.|++||+ +++.+..+..|.
T Consensus 137 ~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~-- 204 (383)
T 3ei3_B 137 SSIRGATTLRDFSGS---------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK-- 204 (383)
T ss_dssp EETTTEEEEEETTSC---------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSS--
T ss_pred EeCCCEEEEEECCCC---------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC--
Confidence 999999999998632 334443322 367999999999999999999999999999 466666666543
Q ss_pred CCCcCCCCceeeeEEeecCCCc-EEEEEeCCCeEEEEeCCCCC---CceeEEeecCCceEEEEecC-CCCeEEEEcCCCc
Q 020454 207 SLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQR---RPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGD 281 (326)
Q Consensus 207 ~~~~~~~~~v~~~~~~p~~~~~-~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~~i~~v~~s~-~~~~l~~g~~dg~ 281 (326)
..|.+++|+|. +. +|++++.|+.|++||+++.+ .++..+ .|...|++++|+| ++++|++++.||.
T Consensus 205 -------~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~ 274 (383)
T 3ei3_B 205 -------AKVTHAEFNPR--CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNE 274 (383)
T ss_dssp -------SCEEEEEECSS--CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSE
T ss_pred -------CcEEEEEECCC--CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCc
Confidence 56899999984 44 89999999999999998732 334444 6889999999999 9999999999999
Q ss_pred EEEEECCCCeEEEEEccee------c----------ceEEEEEECCCCCEEEEeccCccC
Q 020454 282 LASVDIRTGKLLGCFIGKC------S----------GSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 282 v~iwd~~~~~~~~~~~~~~------~----------~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
|++||+++++.+..+.+|. . +.+..++|+|++++ +++.|+.+
T Consensus 275 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i 332 (383)
T 3ei3_B 275 IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTI 332 (383)
T ss_dssp EEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCE
T ss_pred EEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeE
Confidence 9999999988776666541 1 23444666666666 77778764
No 101
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.8e-29 Score=213.63 Aligned_cols=235 Identities=10% Similarity=0.048 Sum_probs=166.3
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeec---cCCCCCceEEEEEeeeCCCCCeEEEEe--cCCcEEEEeccccceee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERW---GDPHSSNCVLAASIDDSQNDPLLAVAR--KNGLTDILNPLNGDLRV 89 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~g~--~dg~i~i~~~~~~~~~~ 89 (326)
.+|+++..++.+|+|++... .+..+..... ........+..++| ++++++|++++ .|++|+|||+.+++.+.
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~f--SpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKV-NDQLEFLTSVDFDASTNADDYTKLVYI--SREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETT-TTEEEEEEEECSSCCCCTTCCEEEEEE--CTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred cEEEEecCCCcEEEEEecCC-CceEEEeeeeceeecCCcccCEEEEEE--cCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 34556678899999999865 2222221111 11122222334444 34566776554 68999999999888766
Q ss_pred eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEE
Q 020454 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 169 (326)
.+. +.+.|.++++.+ ++..+++++ ++.+.+|+...... ........+...|.+++
T Consensus 172 ~~~---------~~~~V~~v~fsp--------dg~~l~s~s-~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~v~ 226 (365)
T 4h5i_A 172 EIE---------TRGEVKDLHFST--------DGKVVAYIT-GSSLEVISTVTGSC-------IARKTDFDKNWSLSKIN 226 (365)
T ss_dssp EEE---------CSSCCCEEEECT--------TSSEEEEEC-SSCEEEEETTTCCE-------EEEECCCCTTEEEEEEE
T ss_pred EeC---------CCCceEEEEEcc--------CCceEEecc-ceeEEEEEeccCcc-------eeeeecCCCCCCEEEEE
Confidence 654 235788888755 455666666 55666776543321 11222233456799999
Q ss_pred EcCCCCEEEEecCCC----eEEEEECCCceee----eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454 170 VDISEKFSLFGGKGV----EVNVWDLDKCEKI----WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (326)
Q Consensus 170 ~~~~~~~l~sg~~d~----~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i 241 (326)
|+|+++++++++.|+ .+++||+...... ..+..+ ...|++++|+| ++++||+|+.|++|+|
T Consensus 227 fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~~~V~~~~~Sp--dg~~lasgs~D~~V~i 295 (365)
T 4h5i_A 227 FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR---------FKGITSMDVDM--KGELAVLASNDNSIAL 295 (365)
T ss_dssp EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS---------CSCEEEEEECT--TSCEEEEEETTSCEEE
T ss_pred EcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC---------CCCeEeEEECC--CCCceEEEcCCCEEEE
Confidence 999999999998887 6888998765432 223332 35699999998 6779999999999999
Q ss_pred EeCCCCCCceeEE-eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 242 YDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 242 wd~~~~~~~~~~~-~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
||++++ +++..+ .+|..+|++++|+|||++|++|+.|++|+|||+..
T Consensus 296 wd~~~~-~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 296 VKLKDL-SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EETTTT-EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EECCCC-cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999987 567765 68999999999999999999999999999999964
No 102
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=4.2e-28 Score=210.29 Aligned_cols=224 Identities=13% Similarity=0.188 Sum_probs=185.7
Q ss_pred CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~ 129 (326)
+...+.++.+ .+++|++|+.||.|++||+.+++....+. .|.+.|.++.+ ++..++++
T Consensus 132 ~~~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~l~~----------~~~~l~sg 189 (435)
T 1p22_A 132 TSKGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILT--------GHTGSVLCLQY----------DERVIITG 189 (435)
T ss_dssp SCCCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEEEC--------CCSSCEEEEEC----------CSSEEEEE
T ss_pred CCCcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEEEc--------CCCCcEEEEEE----------CCCEEEEE
Confidence 3445556655 45689999999999999999888776665 56688998887 45799999
Q ss_pred ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceee---eeecCCCCC
Q 020454 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI---WTAKPPPKN 206 (326)
Q Consensus 130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~---~~~~~~~~~ 206 (326)
+.||.|++|++.... .+..+. .+...|.+++++ ++++++|+.|+.|++||+++++.. .....|.
T Consensus 190 ~~dg~i~vwd~~~~~--------~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-- 256 (435)
T 1p22_A 190 SSDSTVRVWDVNTGE--------MLNTLI-HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR-- 256 (435)
T ss_dssp ETTSCEEEEESSSCC--------EEEEEC-CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS--
T ss_pred cCCCeEEEEECCCCc--------EEEEEc-CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC--
Confidence 999999999987543 333333 356789999997 469999999999999999987654 3333332
Q ss_pred CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (326)
Q Consensus 207 ~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd 286 (326)
..|.+++|. ++++++++.||.|++||++++ +++..+..|...|.+++| +++++++|+.||.|++||
T Consensus 257 -------~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd 322 (435)
T 1p22_A 257 -------AAVNVVDFD----DKYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWD 322 (435)
T ss_dssp -------SCEEEEEEE----TTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEE
T ss_pred -------CcEEEEEeC----CCEEEEEeCCCeEEEEECCcC-cEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence 568888883 449999999999999999987 678899999999999998 578999999999999999
Q ss_pred CCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 287 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++++++..+.+| ...|.+++| ++.+|++|+.||.+
T Consensus 323 ~~~~~~~~~~~~h-~~~v~~~~~--~~~~l~sg~~dg~i 358 (435)
T 1p22_A 323 IECGACLRVLEGH-EELVRCIRF--DNKRIVSGAYDGKI 358 (435)
T ss_dssp TTTCCEEEEECCC-SSCEEEEEC--CSSEEEEEETTSCE
T ss_pred CCCCCEEEEEeCC-cCcEEEEEe--cCCEEEEEeCCCcE
Confidence 9999999999998 999999999 77899999999975
No 103
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-29 Score=232.78 Aligned_cols=243 Identities=13% Similarity=0.088 Sum_probs=187.1
Q ss_pred CCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc--ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE
Q 020454 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (326)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~ 127 (326)
+...+.++.|. +.+++|++|+.||.|++||+..+ +....+. .|.++|.++.+.+.. ++..++
T Consensus 8 H~~~V~~l~~s--~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~--------~h~~~V~~l~~s~~~------~~~~l~ 71 (753)
T 3jro_A 8 HNELIHDAVLD--YYGKRLATCSSDKTIKIFEVEGETHKLIDTLT--------GHEGPVWRVDWAHPK------FGTILA 71 (753)
T ss_dssp CCCCEEEECCC--SSSCCEEEEETTTEEEEEEEETTEEEEEEEEC--------CCSSCEEEEEECCTT------SCSEEE
T ss_pred CcceeEEEEEC--CCCCeEEEEECCCcEEEEecCCCCCccceecc--------CCcCceEEEEecCCC------CCCEEE
Confidence 34445555554 44568999999999999999733 3333333 566899999875521 267899
Q ss_pred EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCcee--eeeecCC
Q 020454 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPP 203 (326)
Q Consensus 128 ~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~ 203 (326)
+++.||.|++|++..... ..+... ..+...|.+++|+|+ ++++++|+.|+.|++||++++.. ......
T Consensus 72 s~s~Dg~I~vwd~~~~~~------~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~- 143 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRW------SQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA- 143 (753)
T ss_dssp EEETTSCEEEEEEETTEE------EEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC-
T ss_pred EEeCCCeEEEEECCCCcc------cccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec-
Confidence 999999999999875321 122222 345778999999999 99999999999999999987633 222333
Q ss_pred CCCCCCcCCCCceeeeEEeecC-----------CCcEEEEEeCCCeEEEEeCCCCCC---ceeEEeecCCceEEEEecCC
Q 020454 204 PKNSLGIFTPTWFTSAAFLSID-----------DHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPD 269 (326)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~p~~-----------~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~i~~v~~s~~ 269 (326)
+...|++++|+|.. ++.++++++.||.|++||++.... +...+..|...|++++|+|+
T Consensus 144 --------~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (753)
T 3jro_A 144 --------HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215 (753)
T ss_dssp --------CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred --------CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence 33568999999841 355899999999999999987632 34566788999999999999
Q ss_pred ---CCeEEEEcCCCcEEEEECCCCe-----EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 270 ---SFNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 270 ---~~~l~~g~~dg~v~iwd~~~~~-----~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++|++|+.||.|++||+++++ .+.....| .+.|++++|+|++++|++++.||.+
T Consensus 216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I 278 (753)
T 3jro_A 216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKV 278 (753)
T ss_dssp CSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC-SSCCCCEEECTTTCCEEEECSSSCE
T ss_pred CCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCC-CCceEEEEEcCCCCEEEEEcCCCEE
Confidence 8999999999999999999864 23333456 8899999999999999999999975
No 104
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.1e-28 Score=208.87 Aligned_cols=219 Identities=15% Similarity=0.124 Sum_probs=181.0
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~ 146 (326)
.+++++.||.|++||+.+++....+.. .+...|.++.+.+ ++..+++++.||.|++|++....
T Consensus 105 ~l~~~~~d~~v~lw~~~~~~~~~~~~~-------~~~~~v~~v~~s~--------~~~~l~~~~~dg~i~iwd~~~~~-- 167 (401)
T 4aez_A 105 NVVAVALERNVYVWNADSGSVSALAET-------DESTYVASVKWSH--------DGSFLSVGLGNGLVDIYDVESQT-- 167 (401)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEEC-------CTTCCEEEEEECT--------TSSEEEEEETTSCEEEEETTTCC--
T ss_pred CEEEEECCCeEEEeeCCCCcEeEeeec-------CCCCCEEEEEECC--------CCCEEEEECCCCeEEEEECcCCe--
Confidence 588899999999999999887766654 4567899999766 56789999999999999986543
Q ss_pred cccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecC
Q 020454 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (326)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 225 (326)
.++.+. .+...|.+++|+ +++|++|+.|+.|++||++. ...+..+..|. ..|.+++|+|
T Consensus 168 ------~~~~~~-~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~~-- 227 (401)
T 4aez_A 168 ------KLRTMA-GHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHS---------SEVCGLAWRS-- 227 (401)
T ss_dssp ------EEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCS---------SCEEEEEECT--
T ss_pred ------EEEEec-CCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCC---------CCeeEEEEcC--
Confidence 344444 457789999994 68999999999999999984 45555555543 5689999998
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCe-EEEEc--CCCcEEEEECCCCeEEEEEcceecc
Q 020454 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN-IYIGN--GSGDLASVDIRTGKLLGCFIGKCSG 302 (326)
Q Consensus 226 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~-l~~g~--~dg~v~iwd~~~~~~~~~~~~~~~~ 302 (326)
++++|++++.|+.|++||+++. .++..+..|...|.+++|+|++.. +++|+ .|+.|++||+++++++..+. + ..
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~-~~ 304 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-A-GS 304 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-C-SS
T ss_pred CCCEEEEEeCCCeEEEccCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-C-CC
Confidence 5669999999999999999976 677888889999999999998754 45654 79999999999999998887 3 67
Q ss_pred eEEEEEECCCCCEEEEe--ccCccC
Q 020454 303 SIRSIARHPTLPIIASC--GFLEAA 325 (326)
Q Consensus 303 ~v~~l~~~p~~~~l~s~--s~D~~~ 325 (326)
.|.+++|+|++++|+++ +.||.+
T Consensus 305 ~v~~~~~s~~~~~l~~~~g~~dg~i 329 (401)
T 4aez_A 305 QVTSLIWSPHSKEIMSTHGFPDNNL 329 (401)
T ss_dssp CEEEEEECSSSSEEEEEECTTTCEE
T ss_pred cEEEEEECCCCCeEEEEeecCCCcE
Confidence 89999999999999994 478764
No 105
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-28 Score=201.49 Aligned_cols=238 Identities=14% Similarity=0.188 Sum_probs=187.8
Q ss_pred eeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccC
Q 020454 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (326)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 120 (326)
+...+.. +...+.++.+ +.+++|++|+.||.|++||+.+++....+. .+...+.++.+.+
T Consensus 10 ~~~~l~~--h~~~v~~~~~---~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--------~~~~~v~~~~~~~------- 69 (313)
T 3odt_A 10 LSATLKG--HDQDVRDVVA---VDDSKVASVSRDGTVRLWSKDDQWLGTVVY--------TGQGFLNSVCYDS------- 69 (313)
T ss_dssp EEEEECC--CSSCEEEEEE---EETTEEEEEETTSEEEEEEESSSEEEEEEE--------ECSSCEEEEEEET-------
T ss_pred HHHHhhC--CCCCcEEEEe---cCCCEEEEEEcCCcEEEEECCCCEEEEEee--------cCCccEEEEEECC-------
Confidence 3334443 3444555555 234579999999999999998877666655 4457899898766
Q ss_pred CCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee
Q 020454 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (326)
Q Consensus 121 ~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 200 (326)
++..+++++.||.+++|++..... ...+..+ ..+...|.++.+ ++++|++++.|+.|++|| .++....+
T Consensus 70 -~~~~l~~~~~dg~i~~~~~~~~~~-----~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~ 138 (313)
T 3odt_A 70 -EKELLLFGGKDTMINGVPLFATSG-----EDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL 138 (313)
T ss_dssp -TTTEEEEEETTSCEEEEETTCCTT-----SCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE
T ss_pred -CCCEEEEecCCCeEEEEEeeecCC-----CCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec
Confidence 667999999999999999875331 1122233 235678999999 578999999999999999 55555555
Q ss_pred cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee-cCCceEEEEecCCCCeEEEEcCC
Q 020454 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGS 279 (326)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~d 279 (326)
..+. ..+.++.|.|. +++++++++.|+.|++||.. .....+.. +...+.+++|+|++. +++++.|
T Consensus 139 ~~~~---------~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d 204 (313)
T 3odt_A 139 QAHN---------ASVWDAKVVSF-SENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSND 204 (313)
T ss_dssp ECCS---------SCEEEEEEEET-TTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETT
T ss_pred ccCC---------CceeEEEEccC-CCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCC
Confidence 5543 56889999985 45599999999999999943 34666666 888999999999998 9999999
Q ss_pred CcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
|.|++||+++++++..+.+| .+.|++++|+|++ .|++++.||.+
T Consensus 205 g~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~~~~~dg~v 248 (313)
T 3odt_A 205 GLIKLVDMHTGDVLRTYEGH-ESFVYCIKLLPNG-DIVSCGEDRTV 248 (313)
T ss_dssp SEEEEEETTTCCEEEEEECC-SSCEEEEEECTTS-CEEEEETTSEE
T ss_pred CeEEEEECCchhhhhhhhcC-CceEEEEEEecCC-CEEEEecCCEE
Confidence 99999999999999999998 9999999999999 68899999865
No 106
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=4.2e-28 Score=207.99 Aligned_cols=257 Identities=9% Similarity=0.036 Sum_probs=180.7
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeee----c---cCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVER----W---GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL 87 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 87 (326)
-.+++++.+|.|++|++..+ ......... . ....+...+.++.|... .+.+|++++.||.|++||+.+++.
T Consensus 57 ~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~ 134 (408)
T 4a11_B 57 RYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DTGMFTSSSFDKTLKVWDTNTLQT 134 (408)
T ss_dssp CEEEEEETTSCEEEEECCCC-SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-CTTCEEEEETTSEEEEEETTTTEE
T ss_pred CEEEEEcCCCeEEEEECCCC-cccceEeccccccccccccccCCCcEEEEEEccC-CCcEEEEEeCCCeEEEeeCCCCcc
Confidence 67899999999999999876 221111100 0 00124556666666432 445799999999999999998887
Q ss_pred eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEE
Q 020454 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 167 (326)
...+.. ...+..+.+.+.. .....+++++.+|.|++|++.... .+..+. .+...|.+
T Consensus 135 ~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~d~~~~~--------~~~~~~-~~~~~v~~ 191 (408)
T 4a11_B 135 ADVFNF---------EETVYSHHMSPVS-----TKHCLVAVGTRGPKVQLCDLKSGS--------CSHILQ-GHRQEILA 191 (408)
T ss_dssp EEEEEC---------SSCEEEEEECSSC-----SSCCEEEEEESSSSEEEEESSSSC--------CCEEEC-CCCSCEEE
T ss_pred ceeccC---------CCceeeeEeecCC-----CCCcEEEEEcCCCeEEEEeCCCcc--------eeeeec-CCCCcEEE
Confidence 666553 1456666654422 134589999999999999987543 233333 35678999
Q ss_pred EEEcCCCC-EEEEecCCCeEEEEECCCce-eeeeecCCCCC------CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeE
Q 020454 168 SKVDISEK-FSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKN------SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (326)
Q Consensus 168 ~~~~~~~~-~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~------~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v 239 (326)
++|+|+++ +|++|+.|+.|++||++++. .+..+..+... .....+...|++++|+| ++++|++++.||.|
T Consensus 192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i 269 (408)
T 4a11_B 192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS--DGLHLLTVGTDNRM 269 (408)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT--TSSEEEEEETTSCE
T ss_pred EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC--CCCEEEEecCCCeE
Confidence 99999997 58999999999999998765 33333222111 11123456899999998 56699999999999
Q ss_pred EEEeCCCCC----------------------------------------------CceeEEeecCCceEEEEecCCCCeE
Q 020454 240 RLYDTSAQR----------------------------------------------RPVMSFDFRETPIKAVAEEPDSFNI 273 (326)
Q Consensus 240 ~iwd~~~~~----------------------------------------------~~~~~~~~~~~~i~~v~~s~~~~~l 273 (326)
++||+++.+ +++..+..|...|++++|+|++++|
T Consensus 270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 349 (408)
T 4a11_B 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQEL 349 (408)
T ss_dssp EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEE
T ss_pred EEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEE
Confidence 999987542 2344556788899999999999999
Q ss_pred EEEcCCCcEEEEECCCCeEEEEEcc
Q 020454 274 YIGNGSGDLASVDIRTGKLLGCFIG 298 (326)
Q Consensus 274 ~~g~~dg~v~iwd~~~~~~~~~~~~ 298 (326)
++|+.||.|++||+++++++.....
T Consensus 350 ~s~~~dg~i~iw~~~~~~~~~~~~~ 374 (408)
T 4a11_B 350 YSGSRDCNILAWVPSLYEPVPDDDE 374 (408)
T ss_dssp EEEETTSCEEEEEECC---------
T ss_pred EEECCCCeEEEEeCCCCCccCCCCc
Confidence 9999999999999999888765543
No 107
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.5e-27 Score=207.35 Aligned_cols=222 Identities=14% Similarity=0.231 Sum_probs=187.2
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
+++|++|+.||+|++||+.+++.+..+. .|.+.|.++.+ .++.+++++.||.|++|++....
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~----------~~~~l~s~~~dg~i~vwd~~~~~ 190 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLV--------GHTGGVWSSQM----------RDNIIISGSTDRTLKVWNAETGE 190 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEECC--------CCSSCEEEEEE----------ETTEEEEEETTSCEEEEETTTTE
T ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEc--------CCCCCEEEEEe----------cCCEEEEEeCCCeEEEEECCcCc
Confidence 4589999999999999999888776655 56688988886 34689999999999999987532
Q ss_pred c---------------------ccccccceEEEEEccCC----------CceEEEEEcCCCCEEEEecCCCeEEEEECCC
Q 020454 145 V---------------------SAESSCSTVKSWNVCAS----------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDK 193 (326)
Q Consensus 145 ~---------------------~~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 193 (326)
. +++..++.+++|+.... ..|.++++ +++++++|+.|+.|++||+++
T Consensus 191 ~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~ 268 (445)
T 2ovr_B 191 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET 268 (445)
T ss_dssp EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG
T ss_pred EEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC
Confidence 2 44567889999997643 34777777 678899999999999999999
Q ss_pred ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeE
Q 020454 194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI 273 (326)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l 273 (326)
++.+..+..+. ..|.++.| ++.++++++.|+.|++||++++ +++..+..|...+.++.+ +++++
T Consensus 269 ~~~~~~~~~~~---------~~v~~~~~----~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~--~~~~l 332 (445)
T 2ovr_B 269 ETCLHTLQGHT---------NRVYSLQF----DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMEL--KDNIL 332 (445)
T ss_dssp TEEEEEECCCS---------SCEEEEEE----CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEE--ETTEE
T ss_pred CcEeEEecCCC---------CceEEEEE----CCCEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEEEEE--eCCEE
Confidence 98888876654 45788888 4559999999999999999987 678888889889988877 56799
Q ss_pred EEEcCCCcEEEEECCCCeEEEEEcc---eecceEEEEEECCCCCEEEEeccCccC
Q 020454 274 YIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 274 ~~g~~dg~v~iwd~~~~~~~~~~~~---~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
++|+.||.|++||+++++.+..+.+ | ...|.+++|+ +++|++++.||.+
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~v 384 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFN--KNFVITSSDDGTV 384 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEEC--SSEEEEEETTSEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCC-CCCEEEEEEC--CCEEEEEeCCCeE
Confidence 9999999999999999999999986 6 8899999996 5799999999975
No 108
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=1.2e-27 Score=216.03 Aligned_cols=269 Identities=11% Similarity=-0.010 Sum_probs=205.4
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCce-EEEEEeeeCCCCCeEEEEecCCcEEEEecccc--------c
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNC-VLAASIDDSQNDPLLAVARKNGLTDILNPLNG--------D 86 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~--------~ 86 (326)
.+++++ +|.|++|++.++ ....+....+.. +... +.++.+.+..++++|++|+.||.|++||+.++ +
T Consensus 32 ~l~~~~-~~~v~v~~~~~~-~~~~~~~~~~~~--h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 107 (615)
T 1pgu_A 32 AIAYPC-GKSAFVRCLDDG-DSKVPPVVQFTG--HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN 107 (615)
T ss_dssp EEEEEE-TTEEEEEECCSS-CCSSCSEEEECT--TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE
T ss_pred EEEEec-CCeEEEEECCCC-CCccccceEEec--CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccccc
Confidence 345554 889999999854 111123333433 3344 55666654225669999999999999999755 3
Q ss_pred eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC----CcEEEEEccccccccccccceEEEEEccCC
Q 020454 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSWNVCAS 162 (326)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~----g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (326)
.+..+. .+..+|.++.+.+ ++..+++++.+ +.|.+|+... .+..+. .+.
T Consensus 108 ~~~~~~--------~~~~~v~~~~~s~--------~~~~l~~~~~~~~~~~~v~~~d~~~----------~~~~~~-~~~ 160 (615)
T 1pgu_A 108 VKSEFQ--------VLAGPISDISWDF--------EGRRLCVVGEGRDNFGVFISWDSGN----------SLGEVS-GHS 160 (615)
T ss_dssp EEEEEE--------CCSSCEEEEEECT--------TSSEEEEEECCSSCSEEEEETTTCC----------EEEECC-SCS
T ss_pred ccchhh--------cccccEEEEEEeC--------CCCEEEEeccCCCCccEEEEEECCC----------cceeee-cCC
Confidence 333333 4557899998765 56788888887 6788887221 233333 456
Q ss_pred CceEEEEEcCCCC-EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454 163 GTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (326)
Q Consensus 163 ~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i 241 (326)
..|.+++|+|+++ ++++++.|+.|++||+.+++.+..+..+... ...|++++|+|. ++++|++++.|+.|++
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~-~~~~l~~~~~dg~i~v 233 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ------GSFVRDVEFSPD-SGEFVITVGSDRKISC 233 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT------TCCEEEEEECST-TCCEEEEEETTCCEEE
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC------CceEEEEEECCC-CCCEEEEEeCCCeEEE
Confidence 7899999999997 8999999999999999999988887765421 016899999983 1669999999999999
Q ss_pred EeCCCCCCceeEE-e---ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce---ecceEEEEEECCCCC
Q 020454 242 YDTSAQRRPVMSF-D---FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLP 314 (326)
Q Consensus 242 wd~~~~~~~~~~~-~---~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~~p~~~ 314 (326)
||++++ +.+..+ . .|...|.+++|+ ++++|++++.||.|++||+++++.+..+..+ ....+.++.|. ++.
T Consensus 234 wd~~~~-~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 310 (615)
T 1pgu_A 234 FDGKSG-EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNG 310 (615)
T ss_dssp EETTTC-CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETT
T ss_pred EECCCC-CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCC
Confidence 999987 567777 5 788999999999 9999999999999999999999999888764 13678888885 888
Q ss_pred EEEEeccCccC
Q 020454 315 IIASCGFLEAA 325 (326)
Q Consensus 315 ~l~s~s~D~~~ 325 (326)
+|++++.||.+
T Consensus 311 ~l~~~~~~g~i 321 (615)
T 1pgu_A 311 RIISLSLDGTL 321 (615)
T ss_dssp EEEEEETTSCE
T ss_pred eEEEEECCCCE
Confidence 99999999864
No 109
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=8.8e-28 Score=207.29 Aligned_cols=240 Identities=9% Similarity=0.062 Sum_probs=179.7
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee-eeecc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-VAISN 93 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~-~~~~~ 93 (326)
-.|++|+.||.|++||+.++ +....+.. +...+.++++. +.+|++|+.|+.+++||....... ..+.
T Consensus 160 ~~lasgs~Dg~v~iWd~~~~-----~~~~~~~~--h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~- 227 (420)
T 4gga_A 160 NYLAVGTSSAEVQLWDVQQQ-----KRLRNMTS--HSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLS- 227 (420)
T ss_dssp SEEEEEETTSCEEEEETTTT-----EEEEEECC--CSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEE-
T ss_pred CEEEEEECCCeEEEEEcCCC-----cEEEEEeC--CCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEec-
Confidence 56899999999999999987 55555543 33445555553 348999999999999998754432 2222
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (326)
.+...+..+.+.+ .+..+++++.||.+++|+....... ...+.. ...+...|.+++|+|.
T Consensus 228 -------~h~~~~~~~~~~~--------~g~~l~s~~~D~~v~i~~~~~~~~~----~~~~~~-~~~~~~~V~~~~~~p~ 287 (420)
T 4gga_A 228 -------GHSQEVCGLRWAP--------DGRHLASGGNDNLVNVWPSAPGEGG----WVPLQT-FTQHQGAVKAVAWCPW 287 (420)
T ss_dssp -------CCSSCEEEEEECT--------TSSEEEEEETTSCEEEEESSCCSSC----SCCSEE-ECCCSSCEEEEEECTT
T ss_pred -------ccccceeeeeecC--------CCCeeeeeeccccceEEeecccccc----ceeeee-ecccCCceeeeeeCCC
Confidence 4557788777655 6678999999999999998654311 111222 2245678999999997
Q ss_pred C-CEEEE--ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe--CCCeEEEEeCCCCC
Q 020454 174 E-KFSLF--GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLYDTSAQR 248 (326)
Q Consensus 174 ~-~~l~s--g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~--~dg~v~iwd~~~~~ 248 (326)
+ .++++ |+.|++|++||+.+++....+..+ ..+.++.|+|. ++.+++++ .|+.|++||++++
T Consensus 288 ~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~----------~~v~~~~~~~~--~~~lv~~sg~~d~~I~iwd~~~~- 354 (420)
T 4gga_A 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH----------SQVCSILWSPH--YKELISGHGFAQNQLVIWKYPTM- 354 (420)
T ss_dssp CTTEEEEEECTTTCEEEEEETTTTEEEEEEECS----------SCEEEEEEETT--TTEEEEEECTTTCCEEEEETTTC-
T ss_pred cccEEEEEeecCCCEEEEEeCCccccceeeccc----------cceeeeeecCC--CCeEEEEEecCCCEEEEEECCCC-
Confidence 6 56554 568999999999999887776543 34778899984 44666554 7999999999987
Q ss_pred CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce
Q 020454 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (326)
Q Consensus 249 ~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~ 299 (326)
+++.++.+|...|++++|+|+|++|++|+.|++|+|||+....+..+...+
T Consensus 355 ~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~ 405 (420)
T 4gga_A 355 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRERE 405 (420)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhc
Confidence 678999999999999999999999999999999999999877666555544
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.5e-28 Score=204.75 Aligned_cols=237 Identities=12% Similarity=0.025 Sum_probs=184.0
Q ss_pred CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCc-eEE
Q 020454 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR-TLL 127 (326)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~l~ 127 (326)
.+...+.++.|.. .+++|++++.||.|++|++.+++........ ..+...|.++.+.+ ++. .++
T Consensus 9 ~h~~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~--------~~~~~l~ 73 (342)
T 1yfq_A 9 APKDYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-----LRYKHPLLCCNFID--------NTDLQIY 73 (342)
T ss_dssp CCSSCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEEEEEE-----EECSSCEEEEEEEE--------SSSEEEE
T ss_pred CCCCcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCccccceee-----eecCCceEEEEECC--------CCCcEEE
Confidence 3445566666654 3558999999999999999877611111111 14457899898765 567 899
Q ss_pred EEecCCcEEEEEc-cccccccccccceEEEEEc-cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC---------cee
Q 020454 128 TCTTKGKASMRSI-EVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK---------CEK 196 (326)
Q Consensus 128 ~~~~~g~v~i~~~-~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~---------~~~ 196 (326)
+++.||.|++|++ .... ...+.. .+...|.+++|+| +++|++++.|+.|++||+++ +++
T Consensus 74 ~~~~dg~i~~wd~~~~~~---------~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 143 (342)
T 1yfq_A 74 VGTVQGEILKVDLIGSPS---------FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN 143 (342)
T ss_dssp EEETTSCEEEECSSSSSS---------EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC
T ss_pred EEcCCCeEEEEEeccCCc---------eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe
Confidence 9999999999998 5432 122221 1577899999999 99999999999999999986 444
Q ss_pred eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC-CCCce-eEEeecCCceEEEEecC-CCCeE
Q 020454 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRPV-MSFDFRETPIKAVAEEP-DSFNI 273 (326)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~-~~~~~-~~~~~~~~~i~~v~~s~-~~~~l 273 (326)
+..+. +...|.+++|+|. .+++++.|+.|++||++. ..... .....+...+.+++|+| +++++
T Consensus 144 ~~~~~----------~~~~v~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 144 SNNTK----------VKNKIFTMDTNSS----RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp SSSSS----------SCCCEEEEEECSS----EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEE
T ss_pred eeEEe----------eCCceEEEEecCC----cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEE
Confidence 33322 3467899999863 399999999999999997 53322 33445778999999999 99999
Q ss_pred EEEcCCCcEEEEECCCC------eEEEEEcceecc---------eEEEEEECCCCCEEEEeccCccC
Q 020454 274 YIGNGSGDLASVDIRTG------KLLGCFIGKCSG---------SIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 274 ~~g~~dg~v~iwd~~~~------~~~~~~~~~~~~---------~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
++|+.||.|++|+++.. +....+.+| .. .|.+++|+|++++|++++.||.+
T Consensus 210 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 275 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH-RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII 275 (342)
T ss_dssp EEEETTSEEEEEECCTTCCSTTCTTCEEEECC-CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred EEEecCCcEEEEEEcCCCcccccccceeeecc-cccccccccceeEEEEEEcCCCCEEEEecCCceE
Confidence 99999999999999887 777888876 55 99999999999999999999875
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.4e-26 Score=196.30 Aligned_cols=258 Identities=14% Similarity=0.109 Sum_probs=195.8
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeE-EEEecCCcEEEEeccccceeeeecc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISN 93 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~~~~~~~~~~~ 93 (326)
..+++++.+|.|++||+.++ ++...+..+.. +.++.+ ++.++++ ++++.|+.|++||+.+++.+..+..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~-----~~~~~~~~~~~---~~~~~~--s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~ 72 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN-----KVTATIPVGSN---PMGAVI--SPDGTKVYVANAHSNDVSIIDTATNNVIATVPA 72 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT-----EEEEEEECSSS---EEEEEE--CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCC-----eEEEEeecCCC---cceEEE--CCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC
Confidence 56889999999999999877 55444443322 334444 4555555 6777999999999998888776653
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (326)
+ ..+.++.+.+ ++..++ ++..++.|++||+.... .+.... ....+.+++|+|
T Consensus 73 --------~-~~v~~~~~sp--------dg~~l~~~~~~~~~v~v~d~~~~~--------~~~~~~--~~~~~~~~~~s~ 125 (391)
T 1l0q_A 73 --------G-SSPQGVAVSP--------DGKQVYVTNMASSTLSVIDTTSNT--------VAGTVK--TGKSPLGLALSP 125 (391)
T ss_dssp --------S-SSEEEEEECT--------TSSEEEEEETTTTEEEEEETTTTE--------EEEEEE--CSSSEEEEEECT
T ss_pred --------C-CCccceEECC--------CCCEEEEEECCCCEEEEEECCCCe--------EEEEEe--CCCCcceEEECC
Confidence 1 3778788755 445564 55567999999987543 333333 345789999999
Q ss_pred CCCEE-EEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE-EEEeCCCeEEEEeCCCCCCc
Q 020454 173 SEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRRP 250 (326)
Q Consensus 173 ~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-~~~~~dg~v~iwd~~~~~~~ 250 (326)
++++| ++++.++.|++||+.+++.+..+..+ ..+..++|+| +++.+ ++++.++.|++||+++. +.
T Consensus 126 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~----------~~~~~~~~~~--dg~~l~~~~~~~~~v~~~d~~~~-~~ 192 (391)
T 1l0q_A 126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG----------RSPKGIAVTP--DGTKVYVANFDSMSISVIDTVTN-SV 192 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECC----------SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTT-EE
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEecC----------CCcceEEECC--CCCEEEEEeCCCCEEEEEECCCC-eE
Confidence 99877 78888999999999998887765543 2367889998 44455 67888999999999976 44
Q ss_pred eeEEeecCCceEEEEecCCCCeEEEEc---CCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEE-EEeccCccC
Q 020454 251 VMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII-ASCGFLEAA 325 (326)
Q Consensus 251 ~~~~~~~~~~i~~v~~s~~~~~l~~g~---~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l-~s~s~D~~~ 325 (326)
+..+. +...+.+++|+|++++|++++ .++.|++||+++++.+..+..| . .+.+++|+|++++| ++++.|+.+
T Consensus 193 ~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~s~~~d~~v 268 (391)
T 1l0q_A 193 IDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-P-DPAGIAVTPDGKKVYVALSFXNTV 268 (391)
T ss_dssp EEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-S-SEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC-C-CccEEEEccCCCEEEEEcCCCCEE
Confidence 55554 456889999999999999887 6899999999999999888865 4 57899999999877 677888754
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=4.9e-28 Score=207.69 Aligned_cols=231 Identities=11% Similarity=0.040 Sum_probs=177.7
Q ss_pred EEEEecCCcEEEEeccccc-eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454 68 LAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (326)
Q Consensus 68 l~~g~~dg~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~ 146 (326)
+++++.||.|+||++.+.. ....+..+ ..|.+.|.++.+.+. ++..+++++.||.|++|++......
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~-----~~h~~~V~~~~~~p~-------~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGRVDKNVPLV-----CGHTAPVLDIAWCPH-------NDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEECCTTCCCB-----CCCSSCEEEEEECTT-------CTTEEEEEETTSEEEEEECCTTCCS
T ss_pred EEEEcCCCEEEEEECccCCCCCCCCceE-----ecCCCCEEEEEeCCC-------CCCEEEEEeCCCeEEEEEccCCCCc
Confidence 4457889999999985432 21222221 267789999997541 3468999999999999998765321
Q ss_pred cccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeee--cCCCCCCCCcCCCCceeeeEEee
Q 020454 147 AESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTA--KPPPKNSLGIFTPTWFTSAAFLS 223 (326)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~p 223 (326)
. .....+..+. .+...|.+++|+|++ ++|++++.|+.|++||+++++.+..+ ..|. ..|++++|+|
T Consensus 118 ~-~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~v~~~~~~~ 186 (402)
T 2aq5_A 118 L-PLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP---------DTIYSVDWSR 186 (402)
T ss_dssp S-CBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC---------SCEEEEEECT
T ss_pred c-ccCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC---------CceEEEEECC
Confidence 1 1112344444 356789999999998 79999999999999999999888777 4433 5689999998
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCCCCceeEE-eecCCc-eEEEEecCCCCeEEEE---cCCCcEEEEECCCCeE-EEEEc
Q 020454 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETP-IKAVAEEPDSFNIYIG---NGSGDLASVDIRTGKL-LGCFI 297 (326)
Q Consensus 224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~-i~~v~~s~~~~~l~~g---~~dg~v~iwd~~~~~~-~~~~~ 297 (326)
++++|++++.|+.|++||++++ +.+..+ ..|... +.+++|+|++++|++| +.|+.|++||+++++. +....
T Consensus 187 --~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~ 263 (402)
T 2aq5_A 187 --DGALICTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263 (402)
T ss_dssp --TSSCEEEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred --CCCEEEEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence 5669999999999999999987 566777 567665 8999999999999999 8999999999998654 33333
Q ss_pred -ceecceEEEEEECCCCCEEE-EeccCccC
Q 020454 298 -GKCSGSIRSIARHPTLPIIA-SCGFLEAA 325 (326)
Q Consensus 298 -~~~~~~v~~l~~~p~~~~l~-s~s~D~~~ 325 (326)
.| ...|.+++|+|++++|+ +++.||.+
T Consensus 264 ~~~-~~~v~~~~~s~~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 264 LDT-SSGVLLPFFDPDTNIVYLCGKGDSSI 292 (402)
T ss_dssp CCC-CSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred ccC-CCceeEEEEcCCCCEEEEEEcCCCeE
Confidence 34 77899999999999886 45578865
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2e-27 Score=200.39 Aligned_cols=253 Identities=8% Similarity=-0.036 Sum_probs=174.4
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeE-EEEecCCcEEEEeccccceeeeecc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISN 93 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~~~~~~~~~~~ 93 (326)
-.+++|+++| ++||++.+. +....... ....++.+ .. ..+++ ++|+.|++|++||..+++.+..+..
T Consensus 32 ~~la~g~~~~-~~iw~~~~~-----~~~~~~~~--~~~~~~~~--~~--~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~ 99 (355)
T 3vu4_A 32 SCLILSTLKS-FEIYNVHPV-----AHIMSQEM--RHLSKVRM--LH--RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV 99 (355)
T ss_dssp SEEEEECSSE-EEEEEETTE-----EEEEEEEC--SCCCEEEE--CT--TSSEEEEECSSTTEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEcCCE-EEEEecCCc-----ceeeeeec--CCeEEEEE--cC--CCCEEEEEECCccEEEEEECCCCcEEEEEEC
Confidence 3566676666 689998865 33222221 12333333 22 23344 6688889999999998888776652
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc-ccccccccceEEEEEccCCCceEEEEEcC
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT-KVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (326)
..+|.++.+.+ +.+++ ..++.+++|++... .... .+.. +...+++++
T Consensus 100 ---------~~~v~~v~~~~----------~~~~~-~~~~~i~i~d~~~~~~~~~-----~~~~-------~~~~~~~s~ 147 (355)
T 3vu4_A 100 ---------DAPVKDLFLSR----------EFIVV-SYGDVISVFKFGNPWKRIT-----DDIR-------FGGVCEFSN 147 (355)
T ss_dssp ---------SSCEEEEEECS----------SEEEE-EETTEEEEEESSTTCCBSS-----CCEE-------EEEEEEEET
T ss_pred ---------CCceEEEEEcC----------CEEEE-EEcCEEEEEECCCCceeeE-----Eecc-------CCceEEEEc
Confidence 24788777622 33444 45889999998764 2111 1111 233445555
Q ss_pred CCCEEEE--ecCCCeEEEEECCCcee----------------eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe
Q 020454 173 SEKFSLF--GGKGVEVNVWDLDKCEK----------------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (326)
Q Consensus 173 ~~~~l~s--g~~d~~i~iwd~~~~~~----------------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~ 234 (326)
+++++ |+.|+.|++||+++++. +..+..| ...|++++|+| ++++|++++
T Consensus 148 --~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h---------~~~v~~~~~s~--~g~~l~s~s 214 (355)
T 3vu4_A 148 --GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH---------TNPIKMVRLNR--KSDMVATCS 214 (355)
T ss_dssp --TEEEEEESSCTTCEEEEECCC------------------CCEEECCC---------SSCEEEEEECT--TSSEEEEEE
T ss_pred --cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc---------CCceEEEEECC--CCCEEEEEe
Confidence 56665 68999999999997651 3334443 36799999998 567999999
Q ss_pred CCCe-EEEEeCCCCCCceeEEe-e-cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE--EE--------------
Q 020454 235 NDHQ-VRLYDTSAQRRPVMSFD-F-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GC-------------- 295 (326)
Q Consensus 235 ~dg~-v~iwd~~~~~~~~~~~~-~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~--~~-------------- 295 (326)
.|++ |++||++++ +++..+. + |...|++++|+|++++|++++.|+.|++||++.+... ..
T Consensus 215 ~d~~~v~iwd~~~~-~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T 3vu4_A 215 QDGTIIRVFKTEDG-VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW 293 (355)
T ss_dssp TTCSEEEEEETTTC-CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred CCCCEEEEEECCCC-cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence 9998 999999987 6688887 4 8899999999999999999999999999999865311 11
Q ss_pred ------EcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 296 ------FIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 296 ------~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+......+...++|+|++.+|++++.||..
T Consensus 294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~ 329 (355)
T 3vu4_A 294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI 329 (355)
T ss_dssp CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence 111002234679999999999999999853
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.7e-27 Score=204.55 Aligned_cols=195 Identities=13% Similarity=0.126 Sum_probs=156.2
Q ss_pred CCeeeeecccccccccCCCCceE-EEEecCCcEEEEEcc--ccccccccccceEEEEEc-cCCCceEEEEEcCCCCEEEE
Q 020454 104 DGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIE--VTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLF 179 (326)
Q Consensus 104 ~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~--~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s 179 (326)
+.|.++.+.+ ++..| ++++.||.|++|++. ... .++.+.. .+...|.+++|+|++++|++
T Consensus 103 ~~v~~~~~s~--------d~~~l~~~~~~dg~v~iwd~~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 166 (450)
T 2vdu_B 103 SYIRNLRLTS--------DESRLIACADSDKSLLVFDVDKTSKN--------VLKLRKRFCFSKRPNAISIAEDDTTVII 166 (450)
T ss_dssp CCEEEEEECT--------TSSEEEEEEGGGTEEEEEEECSSSSS--------CEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CceEEEEEcC--------CCCEEEEEECCCCeEEEEECcCCCCc--------eeeeeecccCCCCceEEEEcCCCCEEEE
Confidence 4688888755 55665 888899999999987 322 3344332 34578999999999999999
Q ss_pred ecCCCeEEEEECCCceeee----eecCCCCCCCCcCCCCceeeeEEeec-CCCcEEEEEeCCCeEEEEeCCCCCCceeE-
Q 020454 180 GGKGVEVNVWDLDKCEKIW----TAKPPPKNSLGIFTPTWFTSAAFLSI-DDHRKFVAGTNDHQVRLYDTSAQRRPVMS- 253 (326)
Q Consensus 180 g~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~- 253 (326)
|+.++.|++|++.+++... .+.. +...|++++|+|. ..+++|++++.|+.|++||+++. ..+..
T Consensus 167 ~~~~g~v~~~~~~~~~~~~~~~~~~~~---------h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~ 236 (450)
T 2vdu_B 167 ADKFGDVYSIDINSIPEEKFTQEPILG---------HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-FIVDKW 236 (450)
T ss_dssp EETTSEEEEEETTSCCCSSCCCCCSEE---------CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-TCEEEE
T ss_pred EeCCCcEEEEecCCcccccccceeeec---------ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-ceeeee
Confidence 9999999999998766543 2222 3367999999994 12679999999999999999977 45666
Q ss_pred EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce------------------------ecceEEEEEE
Q 020454 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------------------------CSGSIRSIAR 309 (326)
Q Consensus 254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~------------------------~~~~v~~l~~ 309 (326)
+..|...|++++|+ ++++|++|+.|+.|++||+++++++..+..+ ....|.+++|
T Consensus 237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 45788999999999 9999999999999999999999998887632 1356899999
Q ss_pred CCCCCEEEEec-cCccC
Q 020454 310 HPTLPIIASCG-FLEAA 325 (326)
Q Consensus 310 ~p~~~~l~s~s-~D~~~ 325 (326)
+|++++|++++ .|+.+
T Consensus 316 ~~~~~~l~~~~~~d~~i 332 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCI 332 (450)
T ss_dssp CSSSSEEEEEETTCSEE
T ss_pred eCCCCEEEEEECCCCeE
Confidence 99999999998 77654
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=220.90 Aligned_cols=242 Identities=12% Similarity=0.113 Sum_probs=181.6
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++|+.+|.|+||++.++ . .+....+. .+...+.++.|..+..+++|++|+.||.|++||+.+++.......
T Consensus 22 ~~latg~~dg~I~vwd~~~~-~--~~~~~~l~--~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~- 95 (753)
T 3jro_A 22 KRLATCSSDKTIKIFEVEGE-T--HKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH- 95 (753)
T ss_dssp CCEEEEETTTEEEEEEEETT-E--EEEEEEEC--CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-
T ss_pred CeEEEEECCCcEEEEecCCC-C--Cccceecc--CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-
Confidence 46999999999999999843 1 13333443 344556677776665577999999999999999988763222222
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC--
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-- 172 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 172 (326)
..+...|.++.+.+.. .+..+++++.||.|++|++...... ..... ..+...|.++.|+|
T Consensus 96 -----~~h~~~V~~v~~sp~~------~~~~l~sgs~dg~I~vwdl~~~~~~------~~~~~-~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 96 -----AVHSASVNSVQWAPHE------YGPLLLVASSDGKVSVVEFKENGTT------SPIII-DAHAIGVNSASWAPAT 157 (753)
T ss_dssp -----CCCSSCEEEEEECCGG------GCSEEEEEETTSEEEEEECCSSSCC------CCEEE-ECCSSCEEEEEECCCC
T ss_pred -----cCCCCCeEEEEECCCC------CCCEEEEEeCCCcEEEEEeecCCCc------ceeEe-ecCCCceEEEEecCcc
Confidence 1566889999876521 1678999999999999998764311 11122 24567899999999
Q ss_pred -----------CCCEEEEecCCCeEEEEECCCce----eeeeecCCCCCCCCcCCCCceeeeEEeecCC-CcEEEEEeCC
Q 020454 173 -----------SEKFSLFGGKGVEVNVWDLDKCE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTND 236 (326)
Q Consensus 173 -----------~~~~l~sg~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~~l~~~~~d 236 (326)
++++|++|+.|+.|++||++++. ....+..|. ..|++++|+|... +.+|++++.|
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~---------~~V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS---------DWVRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS---------SCEEEEEECCCCSSSEEEEEEESS
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC---------CcEEEEEeccCCCCCCEEEEEecC
Confidence 58999999999999999998763 344444433 6699999998410 6799999999
Q ss_pred CeEEEEeCCCCCC----ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 237 HQVRLYDTSAQRR----PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 237 g~v~iwd~~~~~~----~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
|.|++||++.... .......+...|++++|+|++++|++|+.||.|++||+++
T Consensus 229 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9999999987522 2233345778999999999999999999999999999884
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1e-26 Score=196.04 Aligned_cols=224 Identities=13% Similarity=0.074 Sum_probs=162.6
Q ss_pred CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEE
Q 020454 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTC 129 (326)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~ 129 (326)
...+.+++|. +++++|++|+.+| +++|++.+++....... ..+..+.+.. ..+.+ +++
T Consensus 19 ~~~V~~v~fs--~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~----------~~~~~~~~~~--------~~~~~~~~~ 77 (355)
T 3vu4_A 19 SNPVTDYEFN--QDQSCLILSTLKS-FEIYNVHPVAHIMSQEM----------RHLSKVRMLH--------RTNYVAFVT 77 (355)
T ss_dssp CCCCCEEEEC--TTSSEEEEECSSE-EEEEEETTEEEEEEEEC----------SCCCEEEECT--------TSSEEEEEC
T ss_pred CCceEEEEEC--CCCCEEEEEcCCE-EEEEecCCcceeeeeec----------CCeEEEEEcC--------CCCEEEEEE
Confidence 3344455554 4556888888765 78999987665443331 1233333322 33444 677
Q ss_pred ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCc-eeeeeecCCCCCCC
Q 020454 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSL 208 (326)
Q Consensus 130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~~~~~~~ 208 (326)
+.++.|++||+.... .+..+. ....|.++.++++. ++++ .|+.|++||+.++ +.+..+..
T Consensus 78 ~~d~~v~iWd~~~~~--------~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~------ 138 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQ--------DVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR------ 138 (355)
T ss_dssp SSTTEEEEEETTTTE--------EEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE------
T ss_pred CCccEEEEEECCCCc--------EEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc------
Confidence 888999999976543 344444 35689999998754 3333 4789999999987 55444322
Q ss_pred CcCCCCceeeeEEeecCCCcEEEE--EeCCCeEEEEeCCCCC--------------Cc-eeEEeecCCceEEEEecCCCC
Q 020454 209 GIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQR--------------RP-VMSFDFRETPIKAVAEEPDSF 271 (326)
Q Consensus 209 ~~~~~~~v~~~~~~p~~~~~~l~~--~~~dg~v~iwd~~~~~--------------~~-~~~~~~~~~~i~~v~~s~~~~ 271 (326)
....+++++ .+++. ++.||.|++||+++.. .+ +..+..|...|++++|+|+|+
T Consensus 139 ------~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~ 208 (355)
T 3vu4_A 139 ------FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD 208 (355)
T ss_dssp ------EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS
T ss_pred ------CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC
Confidence 122345554 25665 6899999999998753 12 678889999999999999999
Q ss_pred eEEEEcCCCc-EEEEECCCCeEEEEEc-c-eecceEEEEEECCCCCEEEEeccCccC
Q 020454 272 NIYIGNGSGD-LASVDIRTGKLLGCFI-G-KCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 272 ~l~~g~~dg~-v~iwd~~~~~~~~~~~-~-~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+|++|+.||+ |++||+++++++..+. + | .+.|++++|+|++++|++++.|+.+
T Consensus 209 ~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h-~~~v~~~~~s~~~~~l~s~s~d~~v 264 (355)
T 3vu4_A 209 MVATCSQDGTIIRVFKTEDGVLVREFRRGLD-RADVVDMKWSTDGSKLAVVSDKWTL 264 (355)
T ss_dssp EEEEEETTCSEEEEEETTTCCEEEEEECTTC-CSCEEEEEECTTSCEEEEEETTCEE
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-CCcEEEEEECCCCCEEEEEECCCEE
Confidence 9999999998 9999999999999998 5 7 9999999999999999999999875
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.5e-25 Score=194.03 Aligned_cols=263 Identities=11% Similarity=0.066 Sum_probs=195.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccC---CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGD---PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~ 91 (326)
..+++++.+|.|++||+.++ +....... ..+...+..+.+ .+.+.++++++.|+.|++||+.+++.+..+
T Consensus 135 ~~~~~~~~~~~i~~~d~~~g-----~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~ 207 (433)
T 3bws_A 135 RLAIPLLEDEGMDVLDINSG-----QTVRLSPPEKYKKKLGFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKATV 207 (433)
T ss_dssp EEEEEBTTSSSEEEEETTTC-----CEEEECCCHHHHTTCCEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEEE
T ss_pred eEEEEeCCCCeEEEEECCCC-----eEeeecCcccccccCCceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEEE
Confidence 45677788899999999876 33321111 133344555555 345668999999999999999888877666
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 170 (326)
. .+...+.++.+.+ ++..+ ++++.++.|++||+.... .+. .......+.++++
T Consensus 208 ~--------~~~~~~~~~~~~~--------~~~~l~~~~~~~~~i~~~d~~~~~--------~~~--~~~~~~~~~~~~~ 261 (433)
T 3bws_A 208 D--------LTGKWSKILLYDP--------IRDLVYCSNWISEDISVIDRKTKL--------EIR--KTDKIGLPRGLLL 261 (433)
T ss_dssp E--------CSSSSEEEEEEET--------TTTEEEEEETTTTEEEEEETTTTE--------EEE--ECCCCSEEEEEEE
T ss_pred c--------CCCCCeeEEEEcC--------CCCEEEEEecCCCcEEEEECCCCc--------EEE--EecCCCCceEEEE
Confidence 5 3335777788654 44556 455589999999976432 222 2334567999999
Q ss_pred cCCCCEEEEec--------CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454 171 DISEKFSLFGG--------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (326)
Q Consensus 171 ~~~~~~l~sg~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw 242 (326)
+|++++|++++ .|+.|++||+++++.+.... ++..+.+++|+|. ...++++++.++.|++|
T Consensus 262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----------~~~~~~~~~~~~~-g~~l~~~~~~~~~v~v~ 330 (433)
T 3bws_A 262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG----------PPGNKRHIVSGNT-ENKIYVSDMCCSKIEVY 330 (433)
T ss_dssp CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE----------EEECEEEEEECSS-TTEEEEEETTTTEEEEE
T ss_pred cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc----------CCCCcceEEECCC-CCEEEEEecCCCEEEEE
Confidence 99999998887 58899999999887765531 1234778899884 22366777999999999
Q ss_pred eCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC---------------CCcEEEEECCCCeEEEEEcceecceEEEE
Q 020454 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---------------SGDLASVDIRTGKLLGCFIGKCSGSIRSI 307 (326)
Q Consensus 243 d~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~---------------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 307 (326)
|+.++ +.+..+. +...+.+++|+|+++++++++. ||.|++||+.+++.+..+.. ...+.++
T Consensus 331 d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~ 406 (433)
T 3bws_A 331 DLKEK-KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGL 406 (433)
T ss_dssp ETTTT-EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEE
T ss_pred ECCCC-cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceE
Confidence 99976 4555554 5678999999999999988776 57999999999999988875 4578999
Q ss_pred EECCCCCEEEEecc-CccC
Q 020454 308 ARHPTLPIIASCGF-LEAA 325 (326)
Q Consensus 308 ~~~p~~~~l~s~s~-D~~~ 325 (326)
+|+|++++|++++. |+.+
T Consensus 407 ~~s~dg~~l~~~~~~d~~i 425 (433)
T 3bws_A 407 DVSPDNRYLVISDFLDHQI 425 (433)
T ss_dssp EECTTSCEEEEEETTTTEE
T ss_pred EEcCCCCEEEEEECCCCeE
Confidence 99999999988764 7754
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.5e-27 Score=202.61 Aligned_cols=247 Identities=11% Similarity=0.034 Sum_probs=180.0
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++++.|++|+ |.... + +. ..+...+..+++.+. |.++.|++.+++....+..
T Consensus 28 ~~iASas~D~TV~--d~~~~-----~---~l--~gh~~~v~~V~FsPd------------g~~~~~~~~~~~~~~~~~~- 82 (588)
T 2j04_A 28 TLYLTTFPDISIG--QPKYA-----K---DI--NCNSKNLFHVKEFPL------------EFENKLDFELAQQNGLLNS- 82 (588)
T ss_dssp CEEEECSSSEEEE--EECCC-----S---CC--SSBGGGTEEEEEECC------------CCCCTTTTSCCCSSCSSTT-
T ss_pred CEEEEEcCCceee--ccccc-----c---ee--cCCCccEEEEEECCC------------CCcceEEEEeCCCceEeec-
Confidence 5788899999999 64332 1 11 245555555555433 2444444443332222221
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccC----CCceEEEEE
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIAFSKV 170 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~ 170 (326)
.++..|.++++.+ ++..+++++.||.+++|+.+. .+.... .+ ...+.+++|
T Consensus 83 ------~~~~~V~~vawSP--------dG~~LAs~s~dg~V~iwd~~~----------~l~~l~-~~~~~~~~sv~svaf 137 (588)
T 2j04_A 83 ------QPVCYPRVCKPSP--------IDDWMAVLSNNGNVSVFKDNK----------MLTNLD-SKGNLSSRTYHCFEW 137 (588)
T ss_dssp ------SCSCCEEEEEECS--------SSSCEEEEETTSCEEEEETTE----------EEEECC-CSSCSTTTCEEEEEE
T ss_pred ------CCCCcEEEEEECC--------CCCEEEEEeCCCcEEEEeCCc----------eeeecc-CCCccccccEEEEEE
Confidence 2257899999876 778899999999999999432 222223 22 125999999
Q ss_pred cCCCCEEEEecCCCeEEEEECCCcee-------eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454 171 DISEKFSLFGGKGVEVNVWDLDKCEK-------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (326)
Q Consensus 171 ~~~~~~l~sg~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd 243 (326)
+|+|++||+|+.||+|+|||+.+++. +..++.+... |..||.+++|+| ++ +++++.|++|++||
T Consensus 138 SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g-----h~~~V~sVawSP--dg--Laass~D~tVrlWd 208 (588)
T 2j04_A 138 NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAG-----SKDWVTHIVWYE--DV--LVAALSNNSVFSMT 208 (588)
T ss_dssp CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTT-----CCCCEEEEEEET--TE--EEEEETTCCEEEEC
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccc-----ccccEEEEEEcC--Cc--EEEEeCCCeEEEEE
Confidence 99999999999999999999998752 3444333221 346899999998 55 88889999999999
Q ss_pred CCCCCC--ceeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEE--CCCCCEEEE
Q 020454 244 TSAQRR--PVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR--HPTLPIIAS 318 (326)
Q Consensus 244 ~~~~~~--~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~p~~~~l~s 318 (326)
+..... ...++. .|...|.+++|+ |+.|++++ ++.|++||+.+++......+| ...|.+++| +|++..|++
T Consensus 209 ~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh-~~~V~~va~~~s~d~~~La~ 284 (588)
T 2j04_A 209 VSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS-LENFHIIPLNHEKESTILLM 284 (588)
T ss_dssp CCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC-CSCCCEEEETTCSSCEEEEE
T ss_pred CCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC-CceEEEEEeeeCCCCCEEEE
Confidence 986632 234563 677899999999 68899887 699999999988874444477 999999999 999999999
Q ss_pred eccCcc
Q 020454 319 CGFLEA 324 (326)
Q Consensus 319 ~s~D~~ 324 (326)
++.||.
T Consensus 285 a~edG~ 290 (588)
T 2j04_A 285 SNKTSY 290 (588)
T ss_dssp CSSCEE
T ss_pred EcCCCC
Confidence 999986
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=5.6e-27 Score=200.41 Aligned_cols=253 Identities=11% Similarity=-0.028 Sum_probs=162.7
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeee------CCCCCeEEEEecCCcEEEEecccccee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDD------SQNDPLLAVARKNGLTDILNPLNGDLR 88 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~g~~dg~i~i~~~~~~~~~ 88 (326)
..+++++.|+.||+|++..+..........+ ..+...+..++|.+ ..++++|++|+.|++|+|||+.++...
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~--~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~ 179 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIITQHVLGGK--SGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI 179 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEEEEEECTT--TSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred CEEEEEeCCCcEEEEECCCCccceeeeeccc--CCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence 4688999999999999987611111121122 33444555555543 124568999999999999999776654
Q ss_pred eeecccCCCCCCCCCCCeeeeecccccccccCCCC-ceEEEEecCCcEEEEEcccccccccc-------ccceE------
Q 020454 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS-RTLLTCTTKGKASMRSIEVTKVSAES-------SCSTV------ 154 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~-~~l~~~~~~g~v~i~~~~~~~~~~~~-------~~~~~------ 154 (326)
..+. .+..++.++.+.+ .+ ..+++++.||.|++||+......... .....
T Consensus 180 ~~~~--------~~~~~v~~v~~~p--------~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 180 LAGY--------PLSSPGISVQFRP--------SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp EEEE--------ECSSCEEEEEEET--------TEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred eeec--------CCCCCcEEEEECC--------CCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 4444 3447888888765 33 47999999999999998764321100 00000
Q ss_pred --EE-EEccCCCceEEEEEc-CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCc---------CCCCceeeeEE
Q 020454 155 --KS-WNVCASGTIAFSKVD-ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI---------FTPTWFTSAAF 221 (326)
Q Consensus 155 --~~-~~~~~~~~v~~~~~~-~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~ 221 (326)
.. -...+...+.++.|. ++++.|++++.|+++++||+..++....+..+....... ..........|
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEE
T ss_pred ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEE
Confidence 00 011234567788876 789999999999999999998876555444332221111 11123344567
Q ss_pred eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (326)
Q Consensus 222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~ 287 (326)
+|..++.++++|+.||+|++||+.++ ++......|..+|++++|+|+|++||+++.+| +.+|.+
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~-~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEK-DSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCT-TCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCC-cEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 77666767788899999999999987 55677778889999999999999999998776 555544
No 120
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=4.6e-26 Score=188.89 Aligned_cols=233 Identities=10% Similarity=0.050 Sum_probs=172.7
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-.+++|+.||.|++|+++++ +....+..+ ...+..+++. +.++++|+.++.+++|+...+........
T Consensus 80 ~~l~sgs~Dg~v~iw~~~~~-----~~~~~~~~h--~~~~~~~~~~----~~~l~s~~~~~~~~~~~~~~~~~~~~~~~- 147 (318)
T 4ggc_A 80 NYLAVGTSSAEVQLWDVQQQ-----KRLRNMTSH--SARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLS- 147 (318)
T ss_dssp SEEEEEETTSEEEEEETTTT-----EEEEEEECC--SSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEE-
T ss_pred CEEEEEECCCcEEEeecCCc-----eeEEEecCc--cceEEEeecC----CCEEEEEecCCceEeeecCCCceeEEEEc-
Confidence 56899999999999999987 555555433 3334444442 34799999999999999876544322221
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.+...+..+.+.. .+..+++++.||.|++||+....... ....-...+...|.++.++|.+
T Consensus 148 ------~~~~~~~~~~~~~--------~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~ 208 (318)
T 4ggc_A 148 ------GHSQEVCGLRWAP--------DGRHLASGGNDNLVNVWPSAPGEGGW-----VPLQTFTQHQGAVKAVAWCPWQ 208 (318)
T ss_dssp ------CCSSCEEEEEECT--------TSSEEEEEETTSCEEEEESSCBTTBS-----CCSEEECCCCSCEEEEEECTTS
T ss_pred ------CccCceEEEEEcC--------CCCEEEEEecCcceeEEECCCCcccc-----cceeeecccCCceEEEEecCCC
Confidence 4556777777655 56789999999999999987543211 1111222346689999999976
Q ss_pred C-E--EEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEE--EeCCCeEEEEeCCCCCC
Q 020454 175 K-F--SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQRR 249 (326)
Q Consensus 175 ~-~--l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~--~~~dg~v~iwd~~~~~~ 249 (326)
. + +++++.++.|++||.+.......... ...+..+.|.|.. ..+++ ++.|+.|++||++++ +
T Consensus 209 ~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~----------~~~v~~~~~~~~~--~~~~~~sg~~d~~i~iwd~~~~-~ 275 (318)
T 4ggc_A 209 SNVLATGGGTSDRHIRIWNVCSGACLSAVDA----------HSQVCSILWSPHY--KELISGHGFAQNQLVIWKYPTM-A 275 (318)
T ss_dssp TTEEEEEECTTTCEEEEEETTTCCEEEEEEC----------SSCEEEEEEETTT--TEEEEEECTTTCCEEEEETTTC-C
T ss_pred CcEEEEEecCCCCEEEEEecccccccccccc----------eeeeeeeeecccc--cceEEEEEcCCCEEEEEECCCC-c
Confidence 4 3 35778899999999988776554332 2457788998853 35554 447999999999987 6
Q ss_pred ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (326)
Q Consensus 250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~ 291 (326)
++.++.+|...|++++|+|++++|++|+.||+|+|||+.+..
T Consensus 276 ~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 276 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 789999999999999999999999999999999999997653
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=3.5e-26 Score=197.87 Aligned_cols=244 Identities=9% Similarity=0.012 Sum_probs=175.9
Q ss_pred eeeeeecCcccEEEEEecCCcC-----CCcceeeeccCCCCCceEEEEEeeeCCCCC-eEEEEecCCcEEEEecccccee
Q 020454 15 LRALTFDSLGLIKVIEARGEHG-----GVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNPLNGDLR 88 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~i~~~~~~~~~ 88 (326)
..+++++.+|.|++|++..... +.......+..+.. .+.+++| .+.++ +|++|+.||.|++|++..+...
T Consensus 142 ~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 217 (430)
T 2xyi_A 142 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK--EGYGLSW--NPNLNGYLLSASDDHTICLWDINATPKE 217 (430)
T ss_dssp EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS--CCCCEEE--CTTSTTEEEEECTTSCEEEEETTSCCBG
T ss_pred cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC--CeEEEEe--CCCCCCeEEEEeCCCeEEEEeCCCCCCC
Confidence 5688999999999999986200 11122223333333 3334444 33444 8999999999999999763321
Q ss_pred ----eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCc
Q 020454 89 ----VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT 164 (326)
Q Consensus 89 ----~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (326)
.....+ ..+...|.++.+.+. ....+++++.+|.|++||++.... ...+..+. .+...
T Consensus 218 ~~~~~~~~~~-----~~h~~~v~~v~~~p~-------~~~~l~s~~~dg~i~i~d~~~~~~-----~~~~~~~~-~~~~~ 279 (430)
T 2xyi_A 218 HRVIDAKNIF-----TGHTAVVEDVAWHLL-------HESLFGSVADDQKLMIWDTRNNNT-----SKPSHTVD-AHTAE 279 (430)
T ss_dssp GGEEECSEEE-----CCCSSCEEEEEECSS-------CTTEEEEEETTSEEEEEETTCSCS-----SSCSEEEE-CCSSC
T ss_pred Cceeccceee-----cCCCCCEeeeEEeCC-------CCCEEEEEeCCCeEEEEECCCCCC-----CcceeEee-cCCCC
Confidence 111111 255678988887541 346788999999999999875421 11333333 45678
Q ss_pred eEEEEEcCCCC-EEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454 165 IAFSKVDISEK-FSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (326)
Q Consensus 165 v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw 242 (326)
|.+++|+|++. +|++|+.|+.|++||+++ ..++..+..|. ..|++++|+|. +..+|++++.|+.|++|
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~---------~~v~~i~~sp~-~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK---------DEIFQVQWSPH-NETILASSGTDRRLHVW 349 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS---------SCEEEEEECSS-CTTEEEEEETTSCCEEE
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC---------CCEEEEEECCC-CCCEEEEEeCCCcEEEE
Confidence 99999999886 789999999999999997 44555555543 56999999995 33479999999999999
Q ss_pred eCCCCC-------------CceeEEeecCCceEEEEecCCCC-eEEEEcCCCcEEEEECCCC
Q 020454 243 DTSAQR-------------RPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 243 d~~~~~-------------~~~~~~~~~~~~i~~v~~s~~~~-~l~~g~~dg~v~iwd~~~~ 290 (326)
|++... ..+..+..|...|++++|+|++. +|++++.||.|++|++...
T Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred eCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 998622 34556667888999999999998 8889999999999998753
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=3.5e-26 Score=186.00 Aligned_cols=241 Identities=10% Similarity=0.023 Sum_probs=149.1
Q ss_pred CCCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCc-------------------------eEEEEEeeeCC
Q 020454 9 CPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSN-------------------------CVLAASIDDSQ 63 (326)
Q Consensus 9 ~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~ 63 (326)
.++|..+.++++.+. .|++|+.... ...+..++|..++.++ ..++++.++..
T Consensus 49 ~~~~~~~~~~~~~~~-~v~lw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~ 125 (356)
T 2w18_A 49 RAGCKEPCIITACED-VVSLWKALDA--WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDES 125 (356)
T ss_dssp ----CEEEEEEEESS-EEEEEEESSS--SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------
T ss_pred cCCCCccEEEEeccc-eEEEcccCCC--ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccc
Confidence 567888888888874 6889998865 1222333443322111 11112222222
Q ss_pred CCCeEEEEec--------------------CCcEEEEec-cccceeeeecccCCCCCCCCCCCeeeeecccccccccCCC
Q 020454 64 NDPLLAVARK--------------------NGLTDILNP-LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (326)
Q Consensus 64 ~~~~l~~g~~--------------------dg~i~i~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 122 (326)
.++++++++. |+.|++|++ .+++.+..+.. +...+..+.+.+-+ ++
T Consensus 126 ~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~--------~~~~v~~l~fs~~~-----g~ 192 (356)
T 2w18_A 126 EKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFL--------MPPEETILTFAEVQ-----GM 192 (356)
T ss_dssp CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEE--------CCCSSCEEEEEEEE-----TS
T ss_pred cccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeecc--------CCCceeeEEeeccC-----CC
Confidence 2556666553 667777777 33555444332 12233333332212 15
Q ss_pred CceEEEEecCCcEEEEEccccccccccccceEEEEEccC--CCceEEEEEcCCCCEE------------EEecCCCeEEE
Q 020454 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFS------------LFGGKGVEVNV 188 (326)
Q Consensus 123 ~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l------------~sg~~d~~i~i 188 (326)
...|++++.|++|++||+.... .++.+...+ ...+.+++|+|+++++ ++|+.|++|++
T Consensus 193 ~~~LaSgS~D~TIkIWDl~TGk--------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLKTGQ--------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp TTEEEEEETTSEEEEEETTTCC--------EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred CceEEEecCCCcEEEEECCCCc--------EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence 5789999999999999987644 344444221 2357788899998776 67889999999
Q ss_pred EECCCceeeeeec-----CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceE-
Q 020454 189 WDLDKCEKIWTAK-----PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK- 262 (326)
Q Consensus 189 wd~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~- 262 (326)
||..+++.+..+. ++. ..+.+..+. +.++++++.|++|+|||+.++ +.+.++..|...+.
T Consensus 265 Wd~~tgk~l~v~~~~~p~Gh~---------~~~lsg~~s----g~~lASgS~DgTIkIWDl~tG-k~l~tL~gH~~~vvs 330 (356)
T 2w18_A 265 INPKTTLSVGVMLYCLPPGQA---------GRFLEGDVK----DHCAAAILTSGTIAIWDLLLG-QCTALLPPVSDQHWS 330 (356)
T ss_dssp EETTTTEEEEEEEECCCTTCC---------CCEEEEEEE----TTEEEEEETTSCEEEEETTTC-SEEEEECCC--CCCC
T ss_pred EECCCCEEEEEEEeeccCCCc---------ceeEccccC----CCEEEEEcCCCcEEEEECCCC-cEEEEecCCCCCeEE
Confidence 9999998765431 221 112223332 458999999999999999987 67889988876554
Q ss_pred EEEecCCCCeEEEEcCCCcEEEEEC
Q 020454 263 AVAEEPDSFNIYIGNGSGDLASVDI 287 (326)
Q Consensus 263 ~v~~s~~~~~l~~g~~dg~v~iwd~ 287 (326)
+++|+|+|++|++|+.|++|+|||+
T Consensus 331 ~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEecC
Confidence 6899999999999999999999996
No 123
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=1.3e-25 Score=189.77 Aligned_cols=236 Identities=14% Similarity=0.114 Sum_probs=178.5
Q ss_pred CCCceEEEEEeeeCC-CCCeEEEEecCCcEEEEeccc-ccee-eeecccCCCCCCCCCCCeeeeecccccccccCCCCce
Q 020454 49 HSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLN-GDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (326)
Q Consensus 49 ~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~i~~~~~-~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 125 (326)
.+...+.++.|..+. .+++|++|+.||.|++||+.+ +..+ ..+. .|.+.|.++.+.+ ++..
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------~h~~~v~~~~~~~--------~~~~ 100 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ--------MHTGPVLDVCWSD--------DGSK 100 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE--------ECSSCEEEEEECT--------TSSE
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec--------cccCCEEEEEECc--------CCCE
Confidence 344555566665432 146899999999999999986 4443 2332 5568899999766 5678
Q ss_pred EEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE--cCCCCEEEEecCCCeEEEEECCCceeeeeecCC
Q 020454 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV--DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (326)
Q Consensus 126 l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~ 203 (326)
|++++.||.|++|+++... .+.. ..+...|.+++| +|++++|++++.|+.|++||+++++.+..+..+
T Consensus 101 l~s~~~dg~v~iwd~~~~~--------~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQ--------AIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp EEEEETTSEEEEEETTTTE--------EEEE--EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred EEEEcCCCcEEEEEcCCCC--------ceee--ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 9999999999999987543 2232 235788999999 899999999999999999999998877766543
Q ss_pred CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCe----EEEEcC
Q 020454 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFN----IYIGNG 278 (326)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~----l~~g~~ 278 (326)
. .+.++.+.+ ..+++++.++.+++||++.......... .....+.++++.++... +++|+.
T Consensus 171 ~----------~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 171 E----------RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp S----------CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred C----------CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 2 244555543 2788899999999999987633332222 23345666676666555 999999
Q ss_pred CCcEEEEECCCC---eEEEEEcceecc------------eEEEEEECCCCCEEEEeccCccC
Q 020454 279 SGDLASVDIRTG---KLLGCFIGKCSG------------SIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 279 dg~v~iwd~~~~---~~~~~~~~~~~~------------~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
||.|++||++.. +.+..+.+| .. +|++++|+|++++|++++.||.+
T Consensus 237 dg~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i 297 (368)
T 3mmy_A 237 EGRVAIHYINPPNPAKDNFTFKCH-RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRF 297 (368)
T ss_dssp TSEEEEEESSCSCHHHHSEEEECS-EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCE
T ss_pred CCcEEEEecCCCCccccceeeeee-ecccccccccccccceEEEEEecCCCEEEEEccCCeE
Confidence 999999999987 556777776 54 79999999999999999999975
No 124
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-24 Score=188.07 Aligned_cols=263 Identities=10% Similarity=-0.029 Sum_probs=181.0
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
+.-+....+|.++.|++... .+.. + .... +...+.++.| ++++.+||+++.||.|++||.+. .+..+. .
T Consensus 55 v~~V~FsPdg~~~~~~~~~~-~~~~-~-~~~~---~~~~V~~vaw--SPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~ 123 (588)
T 2j04_A 55 LFHVKEFPLEFENKLDFELA-QQNG-L-LNSQ---PVCYPRVCKP--SPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-S 123 (588)
T ss_dssp TEEEEEECCCCCCTTTTSCC-CSSC-S-STTS---CSCCEEEEEE--CSSSSCEEEEETTSCEEEEETTE--EEEECC-C
T ss_pred EEEEEECCCCCcceEEEEeC-CCce-E-eecC---CCCcEEEEEE--CCCCCEEEEEeCCCcEEEEeCCc--eeeecc-C
Confidence 55677777777777777654 1111 1 1222 1445555555 45677999999999999999643 333322 1
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE---ccCCCceEEEEEc
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN---VCASGTIAFSKVD 171 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~ 171 (326)
.. ......+.++++.+ ++..|++++.||.|++|++....... ..--.+..+. ..+...|.+++|+
T Consensus 124 ~~---~~~~~sv~svafSP--------DG~~LAsgs~DGtVkIWd~~~~~l~~-~~~i~l~ti~~~~~gh~~~V~sVawS 191 (588)
T 2j04_A 124 KG---NLSSRTYHCFEWNP--------IESSIVVGNEDGELQFFSIRKNSENT-PEFYFESSIRLSDAGSKDWVTHIVWY 191 (588)
T ss_dssp SS---CSTTTCEEEEEECS--------SSSCEEEEETTSEEEEEECCCCTTTC-CCCEEEEEEECSCTTCCCCEEEEEEE
T ss_pred CC---ccccccEEEEEEcC--------CCCEEEEEcCCCEEEEEECCCCcccc-ccceeeeeeecccccccccEEEEEEc
Confidence 10 01123588899766 77899999999999999987532100 0000234443 3345689999999
Q ss_pred CCCCEEEEecCCCeEEEEECCCceee---eeec-CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454 172 ISEKFSLFGGKGVEVNVWDLDKCEKI---WTAK-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (326)
Q Consensus 172 ~~~~~l~sg~~d~~i~iwd~~~~~~~---~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~ 247 (326)
|++ +++++.|++|++||+..++.. ..++ .|. ..|.+++|+ ++.+|+++ +++|++||+..+
T Consensus 192 Pdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~---------~~V~svaFs----g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 192 EDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR---------RKITDLKIV----DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp TTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS---------SCCCCEEEE----TTEEEEEC-SSEEEEEETTTT
T ss_pred CCc--EEEEeCCCeEEEEECCCCccccceeeeccccc---------CcEEEEEEE----CCEEEEEe-CCeEEEEECCCC
Confidence 999 778889999999999876632 2332 222 458899998 24888887 799999999976
Q ss_pred CCceeEEe-ecCCceEEEEe--cCCCCeEEEEcCCCcEEEEECCC-----------------------CeEEEEEcceec
Q 020454 248 RRPVMSFD-FRETPIKAVAE--EPDSFNIYIGNGSGDLASVDIRT-----------------------GKLLGCFIGKCS 301 (326)
Q Consensus 248 ~~~~~~~~-~~~~~i~~v~~--s~~~~~l~~g~~dg~v~iwd~~~-----------------------~~~~~~~~~~~~ 301 (326)
+ ...+. +|...+..++| +|++..+++++.||+ ++|.... +..+..+. + .
T Consensus 256 -~-~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~-~ 330 (588)
T 2j04_A 256 -S-ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-T-T 330 (588)
T ss_dssp -E-EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-C-E
T ss_pred -e-EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-c-c
Confidence 3 32333 78999999999 999999999999999 9998742 11122222 2 4
Q ss_pred ceEEEEEECCCCCEEEEecc
Q 020454 302 GSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 302 ~~v~~l~~~p~~~~l~s~s~ 321 (326)
..|.+++|+|+|+.+|+++.
T Consensus 331 ~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 331 LVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEEEECCCCCEEEEEEe
Confidence 46999999999999998864
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=1.3e-23 Score=181.77 Aligned_cols=262 Identities=8% Similarity=-0.004 Sum_probs=186.6
Q ss_pred eecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCC
Q 020454 19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG 98 (326)
Q Consensus 19 ~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~ 98 (326)
++.++|.+++|.+... .+..+....+..+... .++.+ ++.+.++++++.++.|++||+.+++.........
T Consensus 94 ~~~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~---~~~~~--s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--- 164 (433)
T 3bws_A 94 RKPEELNEKLIALDKE-GITHRFISRFKTGFQP---KSVRF--IDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK--- 164 (433)
T ss_dssp SSGGGGTTCEEECCBT-TCSEEEEEEEECSSCB---CCCEE--SSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH---
T ss_pred cccCCCceEEEEECCC-CCcceEEEEEcCCCCc---eEEEE--eCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc---
Confidence 4566776667766543 2222233333322221 12333 3355577778888999999999888765332100
Q ss_pred CCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEE-
Q 020454 99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS- 177 (326)
Q Consensus 99 ~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l- 177 (326)
...+.+.+.++.+.+ ++..+++++.++.|++|+++... .+..+. .+...+.+++|+|+++++
T Consensus 165 ~~~~~~~v~~~~~~~--------~~~~~~s~~~d~~v~~~d~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~l~ 227 (433)
T 3bws_A 165 YKKKLGFVETISIPE--------HNELWVSQMQANAVHVFDLKTLA--------YKATVD-LTGKWSKILLYDPIRDLVY 227 (433)
T ss_dssp HHTTCCEEEEEEEGG--------GTEEEEEEGGGTEEEEEETTTCC--------EEEEEE-CSSSSEEEEEEETTTTEEE
T ss_pred ccccCCceeEEEEcC--------CCEEEEEECCCCEEEEEECCCce--------EEEEEc-CCCCCeeEEEEcCCCCEEE
Confidence 014456788888643 45678899999999999986533 333333 346689999999999877
Q ss_pred EEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe--------CCCeEEEEeCCCCCC
Q 020454 178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--------NDHQVRLYDTSAQRR 249 (326)
Q Consensus 178 ~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~--------~dg~v~iwd~~~~~~ 249 (326)
++++.|+.|++||+++++.+..+..+ ..+.+++|+| +++.+++++ .|+.|++||++++ +
T Consensus 228 ~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-~ 294 (433)
T 3bws_A 228 CSNWISEDISVIDRKTKLEIRKTDKI----------GLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKE-K 294 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEECCCC----------SEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTT-E
T ss_pred EEecCCCcEEEEECCCCcEEEEecCC----------CCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCC-c
Confidence 55668999999999998877665432 3478899998 555788777 5899999999976 4
Q ss_pred ceeEEeecCCceEEEEecCCCCeE-EEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454 250 PVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 250 ~~~~~~~~~~~i~~v~~s~~~~~l-~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
.+..+ .+...+..++|+|+++++ ++++.++.|++||+.+++.+..+. + ...+.+++|+|++++|++++.+
T Consensus 295 ~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 295 LIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-V-FDKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp EEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-C-SSSEEEEEECTTSSEEEEEECC
T ss_pred EEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-C-CCCCCeEEEcCCCCEEEEEecC
Confidence 44444 444578999999999765 567899999999999999888876 4 7789999999999988888763
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=4.6e-23 Score=175.94 Aligned_cols=212 Identities=12% Similarity=0.097 Sum_probs=166.5
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCcEEEEEcccccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKV 145 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~~~~~ 145 (326)
++++++.|+.|++||+.+++.+..+.. + ..+.++.+.+ ++..+ ++++.++.|++||+....
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~--------~-~~~~~~~~s~--------dg~~l~~~~~~d~~i~v~d~~~~~- 65 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPV--------G-SNPMGAVISP--------DGTKVYVANAHSNDVSIIDTATNN- 65 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEEC--------S-SSEEEEEECT--------TSSEEEEEEGGGTEEEEEETTTTE-
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeec--------C-CCcceEEECC--------CCCEEEEECCCCCeEEEEECCCCe-
Confidence 578889999999999998888776653 2 3477777654 44555 677799999999976533
Q ss_pred ccccccceEEEEEccCCCceEEEEEcCCCCEEE-EecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (326)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 224 (326)
.+..+.. ...+.+++|+|++++|+ +++.++.|++||+.+++.+..+..+ ..+.+++|+|
T Consensus 66 -------~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~----------~~~~~~~~s~- 125 (391)
T 1l0q_A 66 -------VIATVPA--GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG----------KSPLGLALSP- 125 (391)
T ss_dssp -------EEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS----------SSEEEEEECT-
T ss_pred -------EEEEEEC--CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC----------CCcceEEECC-
Confidence 3344443 44899999999998774 5567799999999998887665532 3477899998
Q ss_pred CCCcEE-EEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeE-EEEcCCCcEEEEECCCCeEEEEEcceecc
Q 020454 225 DDHRKF-VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLLGCFIGKCSG 302 (326)
Q Consensus 225 ~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l-~~g~~dg~v~iwd~~~~~~~~~~~~~~~~ 302 (326)
+++.+ ++++.++.|++||++++ +.+..+..+ ..+..++|+|++++| ++++.++.|++||+++++.+..+.. ..
T Consensus 126 -dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~ 200 (391)
T 1l0q_A 126 -DGKKLYVTNNGDKTVSVINTVTK-AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EA 200 (391)
T ss_dssp -TSSEEEEEETTTTEEEEEETTTT-EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SS
T ss_pred -CCCEEEEEeCCCCEEEEEECCCC-cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec--CC
Confidence 45555 78888999999999976 556666555 567999999999988 5778899999999999998887763 66
Q ss_pred eEEEEEECCCCCEEEEecc
Q 020454 303 SIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 303 ~v~~l~~~p~~~~l~s~s~ 321 (326)
.+.+++|+|++++|++++.
T Consensus 201 ~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 201 APSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp EEEEEEECTTSSEEEEEEE
T ss_pred CccceEECCCCCEEEEEec
Confidence 8999999999999998873
No 127
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.6e-22 Score=165.49 Aligned_cols=258 Identities=12% Similarity=0.040 Sum_probs=176.5
Q ss_pred eeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc-cceeeeecccCC
Q 020454 18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGD 96 (326)
Q Consensus 18 ~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~-~~~~~~~~~~~~ 96 (326)
...+.++.|++||+.++ +...... + ...+.++.+ ++++++|++++ ++.|.+||+.+ ++.......
T Consensus 16 ~~~~~~~~i~~~d~~~~-----~~~~~~~-~--~~~v~~~~~--spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~--- 81 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTR-----KMRVVWQ-T--PELFEAPNW--SPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG--- 81 (297)
T ss_dssp --CCCCEEEEEEETTTT-----EEEEEEE-E--SSCCEEEEE--CTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT---
T ss_pred CCCCcceeEEEEeCCCC-----ceeeecc-C--CcceEeeEE--CCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc---
Confidence 34567899999999876 3332222 2 223334444 45566788876 88999999987 765443321
Q ss_pred CCCCCCCCCeeeeecccccccccCCCCceEEEEe--cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT--TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (326)
Q Consensus 97 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~--~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (326)
.+...+.++.+.+ ++..++++. .++...+|.++.... ..+. +.....+..++|+|++
T Consensus 82 ----~~~~~~~~~~~sp--------dg~~l~~~~~~~~~~~~l~~~~~~~~-------~~~~--~~~~~~~~~~~~spdg 140 (297)
T 2ojh_A 82 ----FATICNNDHGISP--------DGALYAISDKVEFGKSAIYLLPSTGG-------TPRL--MTKNLPSYWHGWSPDG 140 (297)
T ss_dssp ----TCCCBCSCCEECT--------TSSEEEEEECTTTSSCEEEEEETTCC-------CCEE--CCSSSSEEEEEECTTS
T ss_pred ----cccccccceEECC--------CCCEEEEEEeCCCCcceEEEEECCCC-------ceEE--eecCCCccceEECCCC
Confidence 2234566677655 556788877 445677777654221 1222 2223458889999999
Q ss_pred CEEE-EecCCCeEEEEECC--CceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CCCeEEEEeCCCCCCc
Q 020454 175 KFSL-FGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRP 250 (326)
Q Consensus 175 ~~l~-sg~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~dg~v~iwd~~~~~~~ 250 (326)
++|+ +++.++.++||++. +++. ..+.. +...+.++.|+| +++.|+.++ .++.+++|++......
T Consensus 141 ~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~---------~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~ 208 (297)
T 2ojh_A 141 KSFTYCGIRDQVFDIYSMDIDSGVE-TRLTH---------GEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSS 208 (297)
T ss_dssp SEEEEEEEETTEEEEEEEETTTCCE-EECCC---------SSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred CEEEEEECCCCceEEEEEECCCCcc-eEccc---------CCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCC
Confidence 8776 77889999999864 3332 22222 224578999998 455666555 5899999998633345
Q ss_pred eeEEeecCCceEEEEecCCCCeEEEEcCC-----------CcEEEEECCCCeE--EEEEcceecceEEEEEECCCCCEEE
Q 020454 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGS-----------GDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIA 317 (326)
Q Consensus 251 ~~~~~~~~~~i~~v~~s~~~~~l~~g~~d-----------g~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~ 317 (326)
+..+..+...+..++|+|+|++|++++.+ +.|++||+.+++. +..+.+| ...+.+++|+|++++|+
T Consensus 209 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~ 287 (297)
T 2ojh_A 209 VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG-QGTMNSPNWSPDGDEFA 287 (297)
T ss_dssp EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEES-TTTSCSCCBCTTSSEEE
T ss_pred cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCC-CcccccceECCCCCEEE
Confidence 66777777789999999999999977765 5699999998765 4445566 78899999999999998
Q ss_pred EeccCc
Q 020454 318 SCGFLE 323 (326)
Q Consensus 318 s~s~D~ 323 (326)
+++.|.
T Consensus 288 ~~~~~~ 293 (297)
T 2ojh_A 288 YVRYFP 293 (297)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 888765
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=6.2e-22 Score=170.19 Aligned_cols=214 Identities=8% Similarity=-0.003 Sum_probs=155.9
Q ss_pred CeEEEEecC------CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC---cEE
Q 020454 66 PLLAVARKN------GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG---KAS 136 (326)
Q Consensus 66 ~~l~~g~~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g---~v~ 136 (326)
..++.++.+ +.|++||+..+. ...+. .+...+.++.+.+ ++..++.++.++ .|+
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~--------~~~~~v~~~~~Sp--------dg~~la~~s~~~~~~~i~ 206 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVH--------RSPQPLMSPAWSP--------DGSKLAYVTFESGRSALV 206 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCS-CEEEE--------EESSCEEEEEECT--------TSSEEEEEECTTSSCEEE
T ss_pred CEEEEEEecCCCCccceEEEEcCCCCC-CEEEe--------CCCCcceeeEEcC--------CCCEEEEEEecCCCcEEE
Confidence 346666554 799999996443 34433 2336788888765 567888888775 999
Q ss_pred EEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE-EecCCCe--EEEEECCCceeeeeecCCCCCCCCcCCC
Q 020454 137 MRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (326)
Q Consensus 137 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 213 (326)
+||+.... ...+ . .+...+.+++|+|++++|+ +++.++. |.+||+.+++.. .+..+ .
T Consensus 207 ~~d~~tg~--------~~~l-~-~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~---------~ 266 (415)
T 2hqs_A 207 IQTLANGA--------VRQV-A-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDG---------R 266 (415)
T ss_dssp EEETTTCC--------EEEE-E-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCC---------S
T ss_pred EEECCCCc--------EEEe-e-cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcCC---------C
Confidence 99986432 2222 1 2356799999999999777 6666554 999999887653 33332 2
Q ss_pred CceeeeEEeecCCCcEEEEEeC-CC--eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC---CcEEEEEC
Q 020454 214 TWFTSAAFLSIDDHRKFVAGTN-DH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDI 287 (326)
Q Consensus 214 ~~v~~~~~~p~~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d---g~v~iwd~ 287 (326)
..+.+++|+| +++.|+.++. ++ .|++||+.++ + ...+..+...+..++|+|+|++|+.++.+ ..|++||+
T Consensus 267 ~~~~~~~~sp--dg~~l~~~s~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 267 SNNTEPTWFP--DSQNLAFTSDQAGRPQVYKVNINGG-A-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp SCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSS-C-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred CcccceEECC--CCCEEEEEECCCCCcEEEEEECCCC-C-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 4578999998 5667887775 45 7888898866 3 34555666788999999999999977764 58999999
Q ss_pred CCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454 288 RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 288 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
.+++.. .+..+ . .+.+++|+|++++|++++.|+
T Consensus 343 ~~~~~~-~l~~~-~-~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 343 ATGGVQ-VLSST-F-LDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp TTCCEE-ECCCS-S-SCEEEEECTTSSEEEEEEEET
T ss_pred CCCCEE-EecCC-C-CcCCeEEcCCCCEEEEEEcCC
Confidence 988774 45554 4 899999999999999998776
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=8.5e-21 Score=168.15 Aligned_cols=271 Identities=10% Similarity=0.018 Sum_probs=186.5
Q ss_pred eeeeeecCcccEEEEEe--cCCcCCCcceeeeccCCCCCceEEEEEeeeCC----CCCeEEEEe-cCCcEEEEeccccce
Q 020454 15 LRALTFDSLGLIKVIEA--RGEHGGVPKVVERWGDPHSSNCVLAASIDDSQ----NDPLLAVAR-KNGLTDILNPLNGDL 87 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~g~-~dg~i~i~~~~~~~~ 87 (326)
-+|++++.+|.|++||+ .+. ++...+... .....+.+ ++ ++++|++++ .+++|.+||..+++.
T Consensus 191 ~~l~v~~~d~~V~v~D~~~~t~-----~~~~~i~~g---~~p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 191 RYLLVIGRDARIDMIDLWAKEP-----TKVAEIKIG---IEARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 260 (543)
T ss_dssp CEEEEEETTSEEEEEETTSSSC-----EEEEEEECC---SEEEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred CEEEEECCCCeEEEEECcCCCC-----cEEEEEecC---CCcceEEe--CCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence 46788888899999999 554 344344322 12233334 44 667888887 489999999998888
Q ss_pred eeeecccCCCCC--C-CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCc
Q 020454 88 RVAISNAGDSGA--Q-PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT 164 (326)
Q Consensus 88 ~~~~~~~~~~~~--~-~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (326)
+..+........ . .....+.++.+.+. ....+++...++.|.+|++.... .+.+........
T Consensus 261 ~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~-------~~~~~vs~~~~g~i~vvd~~~~~--------~l~~~~i~~~~~ 325 (543)
T 1nir_A 261 KQIVSTRGMTVDTQTYHPEPRVAAIIASHE-------HPEFIVNVKETGKVLLVNYKDID--------NLTVTSIGAAPF 325 (543)
T ss_dssp EEEEECCEECSSSCCEESCCCEEEEEECSS-------SSEEEEEETTTTEEEEEECTTSS--------SCEEEEEECCSS
T ss_pred ceeecccCcccCccccccCCceEEEEECCC-------CCEEEEEECCCCeEEEEEecCCC--------cceeEEeccCcC
Confidence 777653110000 0 01124555654331 23467778889999999976533 222222334567
Q ss_pred eEEEEEcCCCCEEEEe-cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CCCeEEEE
Q 020454 165 IAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLY 242 (326)
Q Consensus 165 v~~~~~~~~~~~l~sg-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~dg~v~iw 242 (326)
+..+.|+|++++|+++ ..+++|.+||+.+++.+..+.... ..++.....+ ++|. .+..++++. .|++|.+|
T Consensus 326 ~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~-----~ph~g~g~~~-~~p~-~g~~~~s~~~~d~~V~v~ 398 (543)
T 1nir_A 326 LHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK-----TPHPGRGANF-VHPK-YGPVWSTSHLGDGSISLI 398 (543)
T ss_dssp CCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS-----SBCCTTCEEE-EETT-TEEEEEEEBSSSSEEEEE
T ss_pred ccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC-----CCCCCCCccc-CCCC-CccEEEeccCCCceEEEE
Confidence 8889999999976654 568999999999998877665321 1122222222 3442 355677775 68999999
Q ss_pred eCCC-------CCCceeEEeecCCceEEEEecCCCCeEEEEc-------CCCcEEEEECCCCeEE-EEE--------cce
Q 020454 243 DTSA-------QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-------GSGDLASVDIRTGKLL-GCF--------IGK 299 (326)
Q Consensus 243 d~~~-------~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-------~dg~v~iwd~~~~~~~-~~~--------~~~ 299 (326)
|+.+ . +.++++..+...+..++++|++++|++++ .+++|.+||+.+++.. ..+ ..+
T Consensus 399 d~~~~~~~~~~~-~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~ 477 (543)
T 1nir_A 399 GTDPKNHPQYAW-KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG 477 (543)
T ss_dssp ECCTTTCTTTBT-SEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred EeCCCCCchhcC-eEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC
Confidence 9987 4 56888888888888999999999999987 2679999999998877 443 244
Q ss_pred ecceEEEEEECCCCCEEEEe
Q 020454 300 CSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 300 ~~~~v~~l~~~p~~~~l~s~ 319 (326)
...+.++.|+|+|+.|+.+
T Consensus 478 -~~~~~~~~~~~~g~~~~~s 496 (543)
T 1nir_A 478 -AKRVVQPEYNKRGDEVWFS 496 (543)
T ss_dssp -CCEEEEEEECSSSSEEEEE
T ss_pred -CCceEeccCCCCCCEEEEE
Confidence 6789999999999988866
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=4.2e-20 Score=154.50 Aligned_cols=267 Identities=9% Similarity=0.059 Sum_probs=167.3
Q ss_pred eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecC-CcEEEEecc--ccceeeeecc
Q 020454 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN-GLTDILNPL--NGDLRVAISN 93 (326)
Q Consensus 17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-g~i~i~~~~--~~~~~~~~~~ 93 (326)
++++..+|.|++|++... +..+....+..... .. .+.+ ++++++|++++.+ +.|.+|++. +++... +..
T Consensus 8 ~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~-~~--~~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-~~~ 79 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHE--GALTLTQVVDVPGQ-VQ--PMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-AAE 79 (343)
T ss_dssp EEEEGGGTEEEEEEECTT--SCEEEEEEEECSSC-CC--CEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEE
T ss_pred EEeCCCCCeEEEEEECCC--CcEEEeeeEecCCC-Cc--eEEE--CCCCCEEEEeecCCCeEEEEEecCCCCceee-ccc
Confidence 445578999999999632 22223323332222 11 2333 4566678888876 999999997 455322 211
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (326)
+. .+ ..+..+.+.+ ++..+++++ .++.|.+|+++... ....+... .....+.+++|+|
T Consensus 80 ~~-----~~-~~~~~~~~s~--------dg~~l~~~~~~~~~i~~~d~~~~~-----~~~~~~~~--~~~~~~~~~~~s~ 138 (343)
T 1ri6_A 80 SA-----LP-GSLTHISTDH--------QGQFVFVGSYNAGNVSVTRLEDGL-----PVGVVDVV--EGLDGCHSANISP 138 (343)
T ss_dssp EE-----CS-SCCSEEEECT--------TSSEEEEEETTTTEEEEEEEETTE-----EEEEEEEE--CCCTTBCCCEECT
T ss_pred cc-----cC-CCCcEEEEcC--------CCCEEEEEecCCCeEEEEECCCCc-----cccccccc--cCCCCceEEEECC
Confidence 10 11 2556666544 455565555 48889999985111 01122222 2345688999999
Q ss_pred CCCEEEEec-CCCeEEEEECCC-ceeee----eecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCCeEEEEeCC
Q 020454 173 SEKFSLFGG-KGVEVNVWDLDK-CEKIW----TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTS 245 (326)
Q Consensus 173 ~~~~l~sg~-~d~~i~iwd~~~-~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg~v~iwd~~ 245 (326)
++++|++++ .++.|.+||+.+ ++... ..... ....+..++|+| ++++++ ++..++.|++||+.
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~p--dg~~l~~~~~~~~~i~~~~~~ 208 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV--------EGAGPRHMVFHP--NEQYAYCVNELNSSVDVWELK 208 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS--------TTCCEEEEEECT--TSSEEEEEETTTTEEEEEESS
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccC--------CCCCcceEEECC--CCCEEEEEeCCCCEEEEEEec
Confidence 998887776 889999999987 54322 11111 113467889998 455554 55589999999996
Q ss_pred CCC-Cc--eeEEee---c---CCceEEEEecCCCCeEE-EEcCCCcEEEEECC--C--CeEEEEEcceecceEEEEEECC
Q 020454 246 AQR-RP--VMSFDF---R---ETPIKAVAEEPDSFNIY-IGNGSGDLASVDIR--T--GKLLGCFIGKCSGSIRSIARHP 311 (326)
Q Consensus 246 ~~~-~~--~~~~~~---~---~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~--~--~~~~~~~~~~~~~~v~~l~~~p 311 (326)
... .. ...+.. . ...+..++|+|+|++|+ ++..++.|.+||+. + .+.+..+..+ . .+.+++|+|
T Consensus 209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~-~~~~~~~s~ 286 (343)
T 1ri6_A 209 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-T-QPRGFNVDH 286 (343)
T ss_dssp CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-S-SCCCEEECT
T ss_pred CCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-C-ccceEEECC
Confidence 421 21 222221 1 23566899999999887 55578999999998 3 3455556543 3 389999999
Q ss_pred CCCEEEEec-cCcc
Q 020454 312 TLPIIASCG-FLEA 324 (326)
Q Consensus 312 ~~~~l~s~s-~D~~ 324 (326)
++++|++++ .|+.
T Consensus 287 dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 287 SGKYLIAAGQKSHH 300 (343)
T ss_dssp TSSEEEEECTTTCE
T ss_pred CCCEEEEecCCCCe
Confidence 999888877 4554
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.89 E-value=5.9e-20 Score=157.91 Aligned_cols=246 Identities=12% Similarity=0.035 Sum_probs=170.2
Q ss_pred eeeeeecCc------ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCC---cEEEEecccc
Q 020454 15 LRALTFDSL------GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNG---LTDILNPLNG 85 (326)
Q Consensus 15 ~~l~~~~~~------G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg---~i~i~~~~~~ 85 (326)
-+++.++.+ +.|++||+.++ ... .+.. +...+.... +++++++|++++.++ .|++||+.++
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~--~~~----~l~~--~~~~v~~~~--~Spdg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGY--NQF----VVHR--SPQPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSC--SCE----EEEE--ESSCEEEEE--ECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CEEEEEEecCCCCccceEEEEcCCCC--CCE----EEeC--CCCcceeeE--EcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 466666554 79999999754 111 2211 122333444 456677899998875 9999999888
Q ss_pred ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCc--EEEEEccccccccccccceEEEEEccCC
Q 020454 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGK--ASMRSIEVTKVSAESSCSTVKSWNVCAS 162 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~--v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (326)
+... +. .+.+.+.++.+.+ ++..|+ +++.++. |++|++.... .+.. ..+.
T Consensus 214 ~~~~-l~--------~~~~~~~~~~~sp--------dg~~la~~~~~~g~~~i~~~d~~~~~---------~~~l-~~~~ 266 (415)
T 2hqs_A 214 AVRQ-VA--------SFPRHNGAPAFSP--------DGSKLAFALSKTGSLNLYVMDLASGQ---------IRQV-TDGR 266 (415)
T ss_dssp CEEE-EE--------CCSSCEEEEEECT--------TSSEEEEEECTTSSCEEEEEETTTCC---------EEEC-CCCS
T ss_pred cEEE-ee--------cCCCcccCEEEcC--------CCCEEEEEEecCCCceEEEEECCCCC---------EEeC-cCCC
Confidence 7643 32 2235677777655 455566 5666665 7888865432 1111 1234
Q ss_pred CceEEEEEcCCCCEEEEecC-CC--eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC---
Q 020454 163 GTIAFSKVDISEKFSLFGGK-GV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--- 236 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d--- 236 (326)
..+.+++|+|++++|++++. ++ .|.+||+.+++... +.. +...+.+++|+| ++++|+.++.+
T Consensus 267 ~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~~---------~~~~~~~~~~sp--dG~~l~~~~~~~g~ 334 (415)
T 2hqs_A 267 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITW---------EGSQNQDADVSS--DGKFMVMVSSNGGQ 334 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCC---------SSSEEEEEEECT--TSSEEEEEEECSSC
T ss_pred CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-Eec---------CCCcccCeEECC--CCCEEEEEECcCCc
Confidence 67899999999998887775 44 67888988765322 211 124578899998 56688877654
Q ss_pred CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC---cEEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (326)
Q Consensus 237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~ 313 (326)
..|++||+.++ + ...+..+. .+.+++|+|+|++|+.++.++ .|++||+. ++....+.+| .+.|.+++|+|..
T Consensus 335 ~~i~~~d~~~~-~-~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~-~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 335 QHIAKQDLATG-G-VQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT-DGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEEEETTTC-C-EEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCS-SSEEEEEEECCCC
T ss_pred eEEEEEECCCC-C-EEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCC-CCCCcCCcccccc
Confidence 58999999976 3 34555553 899999999999999888776 79999987 5556778887 9999999999975
Q ss_pred C
Q 020454 314 P 314 (326)
Q Consensus 314 ~ 314 (326)
.
T Consensus 410 ~ 410 (415)
T 2hqs_A 410 H 410 (415)
T ss_dssp C
T ss_pred c
Confidence 3
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1.7e-19 Score=151.46 Aligned_cols=261 Identities=11% Similarity=0.031 Sum_probs=175.8
Q ss_pred cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCe-EEEEecCCcEEEEeccccceeeeecccCCCCC-C
Q 020454 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPL-LAVARKNGLTDILNPLNGDLRVAISNAGDSGA-Q 100 (326)
Q Consensus 23 ~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~ 100 (326)
+|.|.+||..++ ++...+....... .+.+ ++++++ +++...++.|.+||..+++.+..+........ .
T Consensus 68 ~~~v~~~d~~~~-----~~~~~~~~~~~~~---~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 137 (353)
T 3vgz_A 68 GGVVYRLDPVTL-----EVTQAIHNDLKPF---GATI--NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEE 137 (353)
T ss_dssp SEEEEEECTTTC-----CEEEEEEESSCCC---SEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSS
T ss_pred CccEEEEcCCCC-----eEEEEEecCCCcc---eEEE--CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccc
Confidence 678999998876 4444443222221 2223 234454 45556679999999998888776654110000 0
Q ss_pred CCCCCeeeeecccccccccCCCCceEEEEe--cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE
Q 020454 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCT--TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL 178 (326)
Q Consensus 101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~--~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 178 (326)
.....+.++.+.+ +++.++++. .++.|.+||..... .+..+.. ....+..+.++|++++++
T Consensus 138 ~~~~~~~~~~~s~--------dg~~l~~~~~~~~~~i~~~d~~~~~--------~~~~~~~-~~~~~~~~~~s~dg~~l~ 200 (353)
T 3vgz_A 138 VRPLQPRELVADD--------ATNTVYISGIGKESVIWVVDGGNIK--------LKTAIQN-TGKMSTGLALDSEGKRLY 200 (353)
T ss_dssp CCCCEEEEEEEET--------TTTEEEEEEESSSCEEEEEETTTTE--------EEEEECC-CCTTCCCCEEETTTTEEE
T ss_pred cCCCCCceEEECC--------CCCEEEEEecCCCceEEEEcCCCCc--------eEEEecC-CCCccceEEECCCCCEEE
Confidence 0001145566544 455666655 47889999976433 2333321 244578899999999999
Q ss_pred EecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE-eCCCeEEEEeCCCCCCceeEEeec
Q 020454 179 FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPVMSFDFR 257 (326)
Q Consensus 179 sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~ 257 (326)
+++.++.|.+||+.+++.+......... ....+.+++|+| +++.++++ ..++.|.+||+.++ +.+..+...
T Consensus 201 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~--dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~ 272 (353)
T 3vgz_A 201 TTNADGELITIDTADNKILSRKKLLDDG-----KEHFFINISLDT--ARQRAFITDSKAAEVLVVDTRNG-NILAKVAAP 272 (353)
T ss_dssp EECTTSEEEEEETTTTEEEEEEECCCSS-----SCCCEEEEEEET--TTTEEEEEESSSSEEEEEETTTC-CEEEEEECS
T ss_pred EEcCCCeEEEEECCCCeEEEEEEcCCCC-----CCcccceEEECC--CCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcC
Confidence 9999999999999999887765542211 123577899998 44455554 45699999999877 556666554
Q ss_pred CCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454 258 ETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 258 ~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
. ...++|+|+++++++++ .++.|.+||..+++.+..+.. ...+.+++|+|++++|+.+..+
T Consensus 273 ~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 273 E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp S--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSCEEEEEEEC
T ss_pred C--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCCEEEEEEcc
Confidence 3 25689999999776555 689999999999999988874 4478999999999977776655
No 133
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=3.2e-20 Score=154.84 Aligned_cols=264 Identities=11% Similarity=0.008 Sum_probs=174.4
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeE-EEEecCCcEEEEeccccceeeeeccc
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
.++++..+|.|++||+.++ ++...+..+........+.+ +++++++ +++..++.|.+||+.+++.+..+..-
T Consensus 3 ~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 75 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKM-----AVDKVITIADAGPTPMVPMV--APGGRIAYATVNKSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEEEEETTTEEEEEETTTT-----EEEEEEECTTCTTCCCCEEE--CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred EEEEcCCCCeEEEEECCCC-----cEEEEEEcCCCCCCccceEE--cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence 4788999999999999876 44444432221000112223 3445444 55566799999999888876665531
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEe------------cCCcEEEEEccccccccccccceEEEEEccCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------------TKGKASMRSIEVTKVSAESSCSTVKSWNVCAS 162 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~------------~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (326)
... .+...+.++.+.+ ++..++++. .++.|.+|++.... .+..+.. .
T Consensus 76 ~~~---~~~~~~~~~~~s~--------dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~~--~ 134 (337)
T 1pby_B 76 TPE---ERVKSLFGAALSP--------DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS--------RRKAFEA--P 134 (337)
T ss_dssp BTT---EEEECTTCEEECT--------TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--------EEEEEEC--C
T ss_pred Ccc---cccccccceEECC--------CCCEEEEEecccccccccccccCceEEEEECCCCc--------EEEEEeC--C
Confidence 000 0011344455543 455677775 57999999976432 2333332 4
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE-eCCC----
Q 020454 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDH---- 237 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~-~~dg---- 237 (326)
..+..+.++|++++|+++ ++.|.+||+.+++.+..+...... ..+.|+|. +..++.. ..++
T Consensus 135 ~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~----------~~~~~s~d--g~~l~~~~~~~~~~~~ 200 (337)
T 1pby_B 135 RQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE----------AETYAQPD--VLAVWNQHESSGVMAT 200 (337)
T ss_dssp SSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT----------TTTBCCCB--CCCCCCCCTTTTEEEE
T ss_pred CCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC----------CCceeCCC--ccEEeeeccCCCceee
Confidence 567889999999988887 688999999998877665433211 11245553 3233322 2222
Q ss_pred -------------------eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454 238 -------------------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (326)
Q Consensus 238 -------------------~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 298 (326)
.|.+||+.+++.....+..+...+..++|+|++++++++ ++.|++||+.+++.+..+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~ 278 (337)
T 1pby_B 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL 278 (337)
T ss_dssp EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred eeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC
Confidence 578999997632223344555678899999999999988 78999999999998887774
Q ss_pred eecceEEEEEECCCCCEEEEeccCccC
Q 020454 299 KCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 299 ~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
...+.+++|+|++++|++++.|+.+
T Consensus 279 --~~~~~~~~~s~dg~~l~~~~~~~~i 303 (337)
T 1pby_B 279 --PHSYYSVNVSTDGSTVWLGGALGDL 303 (337)
T ss_dssp --SSCCCEEEECTTSCEEEEESBSSEE
T ss_pred --CCceeeEEECCCCCEEEEEcCCCcE
Confidence 4568899999999999988887753
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=5.2e-20 Score=163.12 Aligned_cols=260 Identities=14% Similarity=0.131 Sum_probs=182.4
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEec--cccceeeeec
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP--LNGDLRVAIS 92 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~--~~~~~~~~~~ 92 (326)
..++++..+|.|++||..++ ++...+..... ...+ ..++++++|++++.|++|++||+ .+++.+..+.
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~-----~~~~~i~~g~~---~~~v--~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSK-----KIVKVIDTGYA---VHIS--RMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTC-----CEEEEEECSTT---EEEE--EECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred EEEEEEcCCCeEEEEECCCc-----eEEEEEecCcc---cceE--EECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 56788889999999999877 55555542222 2223 33566779999999999999999 7777666655
Q ss_pred ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEEEEEcc----------C
Q 020454 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVC----------A 161 (326)
Q Consensus 93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~----------~ 161 (326)
. + ..+.++++.+.. ..++.++++++ .++.|.+||..... .++.+... .
T Consensus 220 ~--------g-~~p~~va~sp~~----~~dg~~l~v~~~~~~~v~v~D~~t~~--------~~~~i~~~g~~~~~~~~~~ 278 (543)
T 1nir_A 220 I--------G-IEARSVESSKFK----GYEDRYTIAGAYWPPQFAIMDGETLE--------PKQIVSTRGMTVDTQTYHP 278 (543)
T ss_dssp C--------C-SEEEEEEECCST----TCTTTEEEEEEEESSEEEEEETTTCC--------EEEEEECCEECSSSCCEES
T ss_pred c--------C-CCcceEEeCCCc----CCCCCEEEEEEccCCeEEEEeccccc--------cceeecccCcccCcccccc
Confidence 2 1 345667653200 00245676666 58999999976533 34444331 1
Q ss_pred CCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeee--eecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCC
Q 020454 162 SGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDH 237 (326)
Q Consensus 162 ~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg 237 (326)
...+..+.++|++ .++++...++.|.+||+.+.+.+. .+. ...++..+.|+| ++++|+ ++..++
T Consensus 279 ~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~----------~~~~~~~~~~sp--dg~~l~va~~~~~ 346 (543)
T 1nir_A 279 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG----------AAPFLHDGGWDS--SHRYFMTAANNSN 346 (543)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE----------CCSSCCCEEECT--TSCEEEEEEGGGT
T ss_pred CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec----------cCcCccCceECC--CCCEEEEEecCCC
Confidence 2368899999976 566777889999999998765433 221 123466889998 565655 455689
Q ss_pred eEEEEeCCCCCCceeEEee----cCCceEEEEecCC-CCeEEEEc-CCCcEEEEECCC-------CeEEEEEcceecceE
Q 020454 238 QVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPD-SFNIYIGN-GSGDLASVDIRT-------GKLLGCFIGKCSGSI 304 (326)
Q Consensus 238 ~v~iwd~~~~~~~~~~~~~----~~~~i~~v~~s~~-~~~l~~g~-~dg~v~iwd~~~-------~~~~~~~~~~~~~~v 304 (326)
+|.+||+.++ +.+..+.. |......+ ++|+ +..++++. .|++|.+||+.+ .++++++.+| .+.+
T Consensus 347 ~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~-g~~~ 423 (543)
T 1nir_A 347 KVAVIDSKDR-RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-GGGS 423 (543)
T ss_dssp EEEEEETTTT-EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-CSCC
T ss_pred eEEEEECCCC-eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC-CCCc
Confidence 9999999987 55666664 43333333 4677 55666665 579999999998 8999999987 8889
Q ss_pred EEEEECCCCCEEEEec
Q 020454 305 RSIARHPTLPIIASCG 320 (326)
Q Consensus 305 ~~l~~~p~~~~l~s~s 320 (326)
..++++|++++|++++
T Consensus 424 ~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 424 LFIKTHPKSSHLYVDT 439 (543)
T ss_dssp CCEECCTTCCEEEECC
T ss_pred eEEEcCCCCCcEEEec
Confidence 9999999999999987
No 135
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=2.9e-21 Score=166.66 Aligned_cols=188 Identities=7% Similarity=-0.042 Sum_probs=135.2
Q ss_pred CCceEEEEecCCcEEEEEcccccccccc--ccceEEE----EEccCCCceEEEEEcCCCCEEE----EecCCCeEEEEEC
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSAES--SCSTVKS----WNVCASGTIAFSKVDISEKFSL----FGGKGVEVNVWDL 191 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~--~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~----sg~~d~~i~iwd~ 191 (326)
..+.+++++.++ +++|+.......... ....+.. ........|.+++|+|++++|+ +|+.|+.|++||+
T Consensus 47 ~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~ 125 (434)
T 2oit_A 47 KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDV 125 (434)
T ss_dssp TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEH
T ss_pred CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEc
Confidence 456788888777 888886532211000 0011111 1123356799999999999999 8999999999998
Q ss_pred CCc--------eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEE
Q 020454 192 DKC--------EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA 263 (326)
Q Consensus 192 ~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~ 263 (326)
++. +++...... ..|...|++++|+|. ++++|++++.||+|++||+++. ..+.....|...|++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~------~~h~~~V~~v~~~p~-~~~~las~s~Dg~v~iwD~~~~-~~~~~~~~~~~~v~~ 197 (434)
T 2oit_A 126 RTFSNEAKQQKRPFAYHKLL------KDAGGMVIDMKWNPT-VPSMVAVCLADGSIAVLQVTET-VKVCATLPSTVAVTS 197 (434)
T ss_dssp HHHHCTTCSSCCCSEEEECC------CSGGGSEEEEEECSS-CTTEEEEEETTSCEEEEEESSS-EEEEEEECGGGCEEE
T ss_pred cccccCCcCCcceeeeeecc------CCCCCceEEEEECCC-CCCEEEEEECCCeEEEEEcCCC-cceeeccCCCCceeE
Confidence 765 221111111 013467999999995 3569999999999999999976 445555567889999
Q ss_pred EEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEccee------cceEEEEEECCCCCEEEEe
Q 020454 264 VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC------SGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 264 v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~------~~~v~~l~~~p~~~~l~s~ 319 (326)
++|+|+|++|++|+.||.|++||++ ++....+..|. ...|.+++|++++.++++.
T Consensus 198 v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~ 258 (434)
T 2oit_A 198 VCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY 258 (434)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence 9999999999999999999999998 66666665431 2389999999988777543
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=2.3e-19 Score=149.52 Aligned_cols=265 Identities=11% Similarity=0.059 Sum_probs=170.3
Q ss_pred CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec-CCcEEEEeccccce-eeee
Q 020454 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDL-RVAI 91 (326)
Q Consensus 14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~-~~~~ 91 (326)
..-+++...++.|++||..++ ++......+. ... .+.+ +++++++++++. ++.|.+||+.+++. ...+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~--~~~-~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTL-----EILNQITLGY--DFV-DTAI--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTC-----CEEEEEECCC--CEE-EEEE--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred CEEEEEecCCCeEEEEeCccc-----ceeeeEEccC--Ccc-eEEE--cCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 355788889999999999877 4433333222 122 3333 445555665555 89999999988886 4444
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC---cEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG---KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g---~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 168 (326)
.. +..+..++.+.+ ++..+++...++ .|.+|++.... .+.... .......+
T Consensus 80 ~~--------~~~~~~~~~~s~--------dg~~l~~~~~~~~~~~i~v~d~~~~~--------~~~~~~--~~~~~~~~ 133 (331)
T 3u4y_A 80 QE--------GQSSMADVDITP--------DDQFAVTVTGLNHPFNMQSYSFLKNK--------FISTIP--IPYDAVGI 133 (331)
T ss_dssp EE--------CSSCCCCEEECT--------TSSEEEECCCSSSSCEEEEEETTTTE--------EEEEEE--CCTTEEEE
T ss_pred cc--------CCCCccceEECC--------CCCEEEEecCCCCcccEEEEECCCCC--------eEEEEE--CCCCccce
Confidence 32 223333355544 456677544443 89999976543 333333 24567899
Q ss_pred EEcCCCCEEE-EecCCCe-EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE-EEEEeCCCeEEEEeCC
Q 020454 169 KVDISEKFSL-FGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK-FVAGTNDHQVRLYDTS 245 (326)
Q Consensus 169 ~~~~~~~~l~-sg~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~-l~~~~~dg~v~iwd~~ 245 (326)
+|+|++++++ +...++. |.+|++.....+....... +.....+..++|+| ++++ ++++..++.|++||+.
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~sp--dg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEF-----ISGGTRPFNITFTP--DGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE-----ECSSSSEEEEEECT--TSSEEEEEETTTTEEEEEECS
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcc-----ccCCCCccceEECC--CCCEEEEEeCCCCeEEEEECC
Confidence 9999997554 4455577 9999987543322211000 01123467889998 5554 4555678999999998
Q ss_pred CCCCc---eeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeE--EEEEcce---ec---ceEEEEEECCCC
Q 020454 246 AQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL--LGCFIGK---CS---GSIRSIARHPTL 313 (326)
Q Consensus 246 ~~~~~---~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~--~~~~~~~---~~---~~v~~l~~~p~~ 313 (326)
++ +. +..+..+ ..+..++|+|+|+++++++ .++.|.+||+.+++. +..+..+ .. .....++|+|++
T Consensus 207 ~~-~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 284 (331)
T 3u4y_A 207 NP-ENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTE 284 (331)
T ss_dssp ST-TSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTS
T ss_pred CC-cccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCC
Confidence 76 44 5555544 6678899999999887655 477899999999887 4443321 01 123568999999
Q ss_pred CEEEEeccCc
Q 020454 314 PIIASCGFLE 323 (326)
Q Consensus 314 ~~l~s~s~D~ 323 (326)
++|+.++.|+
T Consensus 285 ~~l~v~~~~~ 294 (331)
T 3u4y_A 285 TKLFISANIS 294 (331)
T ss_dssp SEEEEEETTT
T ss_pred CEEEEecCCC
Confidence 9887665543
No 137
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=1.8e-18 Score=145.13 Aligned_cols=264 Identities=11% Similarity=0.027 Sum_probs=162.1
Q ss_pred CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec---CCcEEEEeccccceeeeecccCCCC
Q 020454 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLNGDLRVAISNAGDSG 98 (326)
Q Consensus 22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---dg~i~i~~~~~~~~~~~~~~~~~~~ 98 (326)
.++.|.+|.+... .+.............+ . .+.+ +++++ |++++. ++.|.+|++.+++........
T Consensus 14 ~~~~i~v~~~d~~-tg~~~~~~~~~~~~~p-~--~~a~--spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~---- 82 (347)
T 3hfq_A 14 TSQGIYQGTLDTT-AKTLTNDGLLAATQNP-T--YLAL--SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV---- 82 (347)
T ss_dssp SCCEEEEEEEETT-TTEEEEEEEEEECSCC-C--CEEE--CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE----
T ss_pred CCCCEEEEEEcCC-CCeEEEeeeeeccCCc-c--eEEE--ccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee----
Confidence 4556888888754 3333222222222111 1 2233 34455 554444 689999999766642221110
Q ss_pred CCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEEEEEccC--------CCceEEEE
Q 020454 99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCA--------SGTIAFSK 169 (326)
Q Consensus 99 ~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~ 169 (326)
.+...+..+++.+ ++..+++++ .++.+.+|+++.... ...+....... ...+.+++
T Consensus 83 --~~~~~p~~~a~sp--------dg~~l~~~~~~~~~v~v~~~~~~g~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~ 147 (347)
T 3hfq_A 83 --APGTPPAYVAVDE--------ARQLVYSANYHKGTAEVMKIAADGA-----LTLTDTVQHSGHGPRPEQDGSHIHYTD 147 (347)
T ss_dssp --EESCCCSEEEEET--------TTTEEEEEETTTTEEEEEEECTTSC-----EEEEEEEECCCCCSSTTCSSCCEEEEE
T ss_pred --cCCCCCEEEEECC--------CCCEEEEEeCCCCEEEEEEeCCCCC-----eeecceeecCCCCCCccccCCCceEEE
Confidence 1224556677544 556677776 789999999864221 11222222211 12488999
Q ss_pred EcCCCCEEEEecCCCeEEEEECC-Cceeeee--ecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCCeEEEEeCC
Q 020454 170 VDISEKFSLFGGKGVEVNVWDLD-KCEKIWT--AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTS 245 (326)
Q Consensus 170 ~~~~~~~l~sg~~d~~i~iwd~~-~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg~v~iwd~~ 245 (326)
++|+++++++...++.|.+||+. +++.... .... ....+..++|+| ++++++ +...++.|.+|++.
T Consensus 148 ~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~--------~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~ 217 (347)
T 3hfq_A 148 LTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME--------AGFGPRHLVFSP--DGQYAFLAGELSSQIASLKYD 217 (347)
T ss_dssp ECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC--------TTCCEEEEEECT--TSSEEEEEETTTTEEEEEEEE
T ss_pred ECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC--------CCCCCceEEECC--CCCEEEEEeCCCCEEEEEEec
Confidence 99999977777788999999998 4443221 1111 112466789998 566444 46778999999987
Q ss_pred CCCCc---eeEEeecC------CceEEEEecCCCCeEE-EEcCCCcEEEEECCC---CeEEEEEcceecceEEEEEECCC
Q 020454 246 AQRRP---VMSFDFRE------TPIKAVAEEPDSFNIY-IGNGSGDLASVDIRT---GKLLGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 246 ~~~~~---~~~~~~~~------~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~---~~~~~~~~~~~~~~v~~l~~~p~ 312 (326)
..... +..+.... ..+..++|+|+|++|+ +...++.|.+|++.. .+.+..+..+ ...+..++|+|+
T Consensus 218 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~spd 296 (347)
T 3hfq_A 218 TQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE-GDFPRDFDLDPT 296 (347)
T ss_dssp TTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-SSCCCEEEECTT
T ss_pred CCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-CCCcCeEEECCC
Confidence 42111 22222221 3588899999999885 555689999999972 3555666655 567899999999
Q ss_pred CCEEEEeccC
Q 020454 313 LPIIASCGFL 322 (326)
Q Consensus 313 ~~~l~s~s~D 322 (326)
+++|++++.+
T Consensus 297 g~~l~v~~~~ 306 (347)
T 3hfq_A 297 EAFVVVVNQN 306 (347)
T ss_dssp SSEEEEEETT
T ss_pred CCEEEEEEcC
Confidence 9988888765
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=4.6e-18 Score=142.04 Aligned_cols=266 Identities=10% Similarity=0.063 Sum_probs=158.9
Q ss_pred eeeeecCc-ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEeccccceeeeecc
Q 020454 16 RALTFDSL-GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISN 93 (326)
Q Consensus 16 ~l~~~~~~-G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~~~~~~~~~~ 93 (326)
++++++.+ |.|++|++... .+..+....+..+. ....+.+ ++++++|++++ .++.|.+||+.++........
T Consensus 51 ~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 124 (343)
T 1ri6_A 51 YLYVGVRPEFRVLAYRIAPD-DGALTFAAESALPG---SLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV 124 (343)
T ss_dssp EEEEEETTTTEEEEEEECTT-TCCEEEEEEEECSS---CCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE
T ss_pred EEEEeecCCCeEEEEEecCC-CCceeeccccccCC---CCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCcccccccc
Confidence 36666655 99999999832 22222322333222 1223333 45566676665 488999999943322222222
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEE--EEEccCCCceEEEEE
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVK--SWNVCASGTIAFSKV 170 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~ 170 (326)
. .....+.++.+.+ ++..+++++ .++.|.+|++...... ..+. .+.......+..++|
T Consensus 125 ~------~~~~~~~~~~~s~--------dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 185 (343)
T 1ri6_A 125 V------EGLDGCHSANISP--------DNRTLWVPALKQDRICLFTVSDDGHL-----VAQDPAEVTTVEGAGPRHMVF 185 (343)
T ss_dssp E------CCCTTBCCCEECT--------TSSEEEEEEGGGTEEEEEEECTTSCE-----EEEEEEEEECSTTCCEEEEEE
T ss_pred c------cCCCCceEEEECC--------CCCEEEEecCCCCEEEEEEecCCCce-----eeecccccccCCCCCcceEEE
Confidence 1 1113455566544 455677666 8999999998642211 1122 334444567889999
Q ss_pred cCCCCEEE-EecCCCeEEEEECCC--cee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCCeEEEEeC
Q 020454 171 DISEKFSL-FGGKGVEVNVWDLDK--CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDT 244 (326)
Q Consensus 171 ~~~~~~l~-sg~~d~~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg~v~iwd~ 244 (326)
+|++++++ ++..++.|.+||+.. ++. .......... ......+..++|+| ++++|+ +...++.|++||+
T Consensus 186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~i~~s~--dg~~l~v~~~~~~~i~v~d~ 260 (343)
T 1ri6_A 186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN---FSDTRWAADIHITP--DGRHLYACDRTASLITVFSV 260 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT---CCSCCCEEEEEECT--TSSEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc---ccccCCccceEECC--CCCEEEEEecCCCEEEEEEE
Confidence 99998665 455889999999954 332 2222211111 11124577899998 454555 5668999999998
Q ss_pred CC--CC-CceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEE--ECCCCeE--EEEEcceecceEEEEEECCCCC
Q 020454 245 SA--QR-RPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASV--DIRTGKL--LGCFIGKCSGSIRSIARHPTLP 314 (326)
Q Consensus 245 ~~--~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iw--d~~~~~~--~~~~~~~~~~~v~~l~~~p~~~ 314 (326)
.. +. +.+..+..+. .+..++|+|+|++|++++ .++.|.+| |..+++. +..+.. .....+++|.|+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~--g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 261 SEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV--GQGPMWVVVNAHEG 335 (343)
T ss_dssp CTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC--SSSCCEEEEEEEC-
T ss_pred cCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc--CCCCeeEEEEcccC
Confidence 83 21 2233444443 388999999999998877 67999999 4446643 444442 24566788877543
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=3.9e-19 Score=145.22 Aligned_cols=213 Identities=11% Similarity=0.039 Sum_probs=150.3
Q ss_pred EecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc-ccccccc
Q 020454 71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV-TKVSAES 149 (326)
Q Consensus 71 g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~-~~~~~~~ 149 (326)
++.|+.|++||+.+++...... +...+.++.+.+ ++..++++ .++.|++|++.. ..
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~---------~~~~v~~~~~sp--------dg~~l~~~-~~~~i~~~d~~~~~~----- 74 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQ---------TPELFEAPNWSP--------DGKYLLLN-SEGLLYRLSLAGDPS----- 74 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEE---------ESSCCEEEEECT--------TSSEEEEE-ETTEEEEEESSSCCS-----
T ss_pred CCcceeEEEEeCCCCceeeecc---------CCcceEeeEECC--------CCCEEEEE-cCCeEEEEeCCCCCC-----
Confidence 4678999999998877653332 235788788654 44556555 588999999865 33
Q ss_pred ccceEEEEEccCCCceEEEEEcCCCCEEEEec--CCCeEEEE--ECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC
Q 020454 150 SCSTVKSWNVCASGTIAFSKVDISEKFSLFGG--KGVEVNVW--DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (326)
Q Consensus 150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 225 (326)
...+........+.+++|+|++++|++++ .++...|| ++.+++. ..+.. ...+..++|+|
T Consensus 75 ---~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~----------~~~~~~~~~sp-- 138 (297)
T 2ojh_A 75 ---PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTK----------NLPSYWHGWSP-- 138 (297)
T ss_dssp ---CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCS----------SSSEEEEEECT--
T ss_pred ---ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeec----------CCCccceEECC--
Confidence 12222222245788999999999999988 33445555 4444432 22111 12377889998
Q ss_pred CCcEEE-EEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECC-CCeEEEEEcceecc
Q 020454 226 DHRKFV-AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR-TGKLLGCFIGKCSG 302 (326)
Q Consensus 226 ~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~-~~~~~~~~~~~~~~ 302 (326)
+++.|+ ++..++.+++|++.........+..+...+.+++|+|++++|+.++ .++.+++|++. .+..+..+..| ..
T Consensus 139 dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~ 217 (297)
T 2ojh_A 139 DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS-AY 217 (297)
T ss_dssp TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC-SE
T ss_pred CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC-Cc
Confidence 455665 7888999999996533234566666778899999999999888655 58999999986 55566677776 78
Q ss_pred eEEEEEECCCCCEEEEeccCc
Q 020454 303 SIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 303 ~v~~l~~~p~~~~l~s~s~D~ 323 (326)
.+..++|+|++++|++++.|+
T Consensus 218 ~~~~~~~s~dg~~l~~~~~~~ 238 (297)
T 2ojh_A 218 GDWFPHPSPSGDKVVFVSYDA 238 (297)
T ss_dssp EEEEEEECTTSSEEEEEEEET
T ss_pred ccCCeEECCCCCEEEEEEcCC
Confidence 999999999999999988763
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=8.4e-18 Score=141.16 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=159.1
Q ss_pred CCCCeEEEEec-------CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCc
Q 020454 63 QNDPLLAVARK-------NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGK 134 (326)
Q Consensus 63 ~~~~~l~~g~~-------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~ 134 (326)
+.++++++++. ++.|.+||..+++.+..+..- ..+.++.+.+ +++.+ ++...++.
T Consensus 50 ~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---------~~~~~~~~s~--------dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 50 QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---------LKPFGATINN--------TTQTLWFGNTVNSA 112 (353)
T ss_dssp TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---------SCCCSEEEET--------TTTEEEEEETTTTE
T ss_pred CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---------CCcceEEECC--------CCCEEEEEecCCCE
Confidence 44556777663 578999999988887776541 2244455544 44544 55566799
Q ss_pred EEEEEccccccccccccceEEEEEccCCC--------ceEEEEEcCCCCEEEEec--CCCeEEEEECCCceeeeeecCCC
Q 020454 135 ASMRSIEVTKVSAESSCSTVKSWNVCASG--------TIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCEKIWTAKPPP 204 (326)
Q Consensus 135 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~ 204 (326)
|.+||..... .+..+...... .+..+.++|+++++++++ .++.|.+||+.+++.+..+..+.
T Consensus 113 v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 184 (353)
T 3vgz_A 113 VTAIDAKTGE--------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG 184 (353)
T ss_dssp EEEEETTTCC--------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCC
T ss_pred EEEEeCCCCe--------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCC
Confidence 9999976543 33444443221 278899999998777665 57889999999998877765322
Q ss_pred CCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee----cCCceEEEEecCCCCeEEEEcC-C
Q 020454 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNG-S 279 (326)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~~i~~v~~s~~~~~l~~g~~-d 279 (326)
..+..++|+| +++++++++.++.|.+||+.++ +.+..+.. +...+..++|+|+++++++++. +
T Consensus 185 ---------~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 252 (353)
T 3vgz_A 185 ---------KMSTGLALDS--EGKRLYTTNADGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA 252 (353)
T ss_dssp ---------TTCCCCEEET--TTTEEEEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS
T ss_pred ---------CccceEEECC--CCCEEEEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC
Confidence 2355778988 5668899999999999999976 44555554 3456788999999998876665 5
Q ss_pred CcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec-cCcc
Q 020454 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-FLEA 324 (326)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s-~D~~ 324 (326)
+.|.+||+.+++.+..+..+ . ...++|+|++++++.++ .|+.
T Consensus 253 ~~v~~~d~~~~~~~~~~~~~-~--~~~~~~s~dg~~l~v~~~~~~~ 295 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAAP-E--SLAVLFNPARNEAYVTHRQAGK 295 (353)
T ss_dssp SEEEEEETTTCCEEEEEECS-S--CCCEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEECCCCcEEEEEEcC-C--CceEEECCCCCEEEEEECCCCe
Confidence 89999999999998888754 2 36799999998655544 5554
No 141
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=1.6e-18 Score=145.23 Aligned_cols=223 Identities=11% Similarity=0.043 Sum_probs=152.8
Q ss_pred CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCcEEEEEcc
Q 020454 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIE 141 (326)
Q Consensus 63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~ 141 (326)
..+.++++++.+++|.+||+.+++.+..+.. .....+..+.+.+ ++..+ ++...++.|.+|++.
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~~~~~~~s~--------dg~~~~v~~~~~~~i~~~d~~ 73 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------PDKFGPGTAMMAP--------DNRTAYVLNNHYGDIYGIDLD 73 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEEC-------SSCCSSCEEEECT--------TSSEEEEEETTTTEEEEEETT
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEec-------CCCCCCceeEECC--------CCCEEEEEeCCCCcEEEEeCC
Confidence 3455788999999999999998887776653 1111345566543 44444 455678999999976
Q ss_pred ccccccccccceEEEEEccC-----CCceEEEEEcCCCCEEEEecCC------------CeEEEEECCCceeeeeecCCC
Q 020454 142 VTKVSAESSCSTVKSWNVCA-----SGTIAFSKVDISEKFSLFGGKG------------VEVNVWDLDKCEKIWTAKPPP 204 (326)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~sg~~d------------~~i~iwd~~~~~~~~~~~~~~ 204 (326)
... .+....... ...+..++++|++++|++++.+ +.|.+||+.+++.......
T Consensus 74 t~~--------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-- 143 (349)
T 1jmx_B 74 TCK--------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT-- 143 (349)
T ss_dssp TTE--------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--
T ss_pred CCc--------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee--
Confidence 433 233333322 1237789999999999988865 8999999987543221111
Q ss_pred CCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC--------------------------
Q 020454 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------------------------- 258 (326)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------------------------- 258 (326)
...+..+.+++|+| +++ +++++ +.|++||+.++ +.+..+..+.
T Consensus 144 -----~~~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 144 -----FPMPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTG-KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp -----EECCSSCCCEEECT--TSC-EEEES--SSEEEECTTTC-CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred -----ccCCCcccceeECC--CCc-EEEcc--CcEEEEeCCCC-ceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 01123467888988 555 55554 34999999876 3343333221
Q ss_pred ------------------------------------------CceEEEEecC-CCCeEEEEcCCCcEEEEECCCCeEEEE
Q 020454 259 ------------------------------------------TPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGC 295 (326)
Q Consensus 259 ------------------------------------------~~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~~~~~~~ 295 (326)
..+..++|+| ++++++++ ++.|.+||+.+++.+..
T Consensus 213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~ 290 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA 290 (349)
T ss_dssp EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE
T ss_pred eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE
Confidence 1345678889 99999988 88999999999998888
Q ss_pred EcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 296 FIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 296 ~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+.. ...+.+++|+|++++|++++.|+.+
T Consensus 291 ~~~--~~~~~~~~~s~dg~~l~~~~~~~~v 318 (349)
T 1jmx_B 291 ANL--DHTYYCVAFDKKGDKLYLGGTFNDL 318 (349)
T ss_dssp EEC--SSCCCEEEECSSSSCEEEESBSSEE
T ss_pred EcC--CCCccceEECCCCCEEEEecCCCeE
Confidence 763 3467899999999988888877653
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=5.5e-18 Score=155.53 Aligned_cols=267 Identities=13% Similarity=0.051 Sum_probs=163.8
Q ss_pred ecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc-----cceeeeeccc
Q 020454 20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-----GDLRVAISNA 94 (326)
Q Consensus 20 ~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~-----~~~~~~~~~~ 94 (326)
...++.+++||+.++ +........ .. +..+ .+++++++|+++ .++.|.+|++.+ ++........
T Consensus 97 ~~~~~~i~~~d~~~~-----~~~~l~~~~-~~--~~~~--~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~ 165 (706)
T 2z3z_A 97 LFTQGGLVGFDMLAR-----KVTYLFDTN-EE--TASL--DFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDG 165 (706)
T ss_dssp EEETTEEEEEETTTT-----EEEEEECCT-TC--CTTC--EECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCC
T ss_pred EEECCEEEEEECCCC-----ceEEccCCc-cc--ccCC--cCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCC
Confidence 335699999999876 332222211 11 1112 345667778874 789999999987 6654332210
Q ss_pred CCC------CCCCCCCCeeeeecccccccccCCCCceEEEEe---------------------------------cCCcE
Q 020454 95 GDS------GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---------------------------------TKGKA 135 (326)
Q Consensus 95 ~~~------~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~---------------------------------~~g~v 135 (326)
... ..+.+...+.++.+.+ ++..|++++ .+..|
T Consensus 166 ~~~~~~g~~~~~ee~~~~~~~~~Sp--------Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 166 TETLVYGQAVHQREFGIEKGTFWSP--------KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp BTTEEESSCCGGGCTTCCCSEEECT--------TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred CCCeEcccchhhhhcCCCceEEECC--------CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 000 0000001135566544 566777776 33566
Q ss_pred EEEEccccccccccccceEEEEE-ccCCCceEEEEEcCCCCEEEEecCCC-----eEEEEECCCceeeeeec-CCCCCCC
Q 020454 136 SMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCEKIWTAK-PPPKNSL 208 (326)
Q Consensus 136 ~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~d~-----~i~iwd~~~~~~~~~~~-~~~~~~~ 208 (326)
++|++.... ...+.. ..+...+..++|+|++++|++++.++ .|.+||+.+++....+. ......
T Consensus 238 ~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~- 308 (706)
T 2z3z_A 238 GIYHLATGK--------TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHY- 308 (706)
T ss_dssp EEEETTTTE--------EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSC-
T ss_pred EEEECCCCc--------eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCe-
Confidence 777765322 111111 12335688999999999998877665 89999999883322221 111100
Q ss_pred CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEE-EEecCCCCeEEE-EcCCC----cE
Q 020454 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYI-GNGSG----DL 282 (326)
Q Consensus 209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~-v~~s~~~~~l~~-g~~dg----~v 282 (326)
...+..+.|+|..+++++++++.|+.++||++......+..+..+...+.. ++|+|+++.|+. ++.++ .|
T Consensus 309 ----~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l 384 (706)
T 2z3z_A 309 ----VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF 384 (706)
T ss_dssp ----CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred ----ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence 012356789873356688889999999999876322456667677777876 799999988874 44554 67
Q ss_pred EEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
+.||+.+++ +..+. + ...+.+++|+|++++|+..+.
T Consensus 385 ~~~d~~~~~-~~~l~-~-~~~~~~~~~spdg~~l~~~~~ 420 (706)
T 2z3z_A 385 YCIDIKGGK-TKDLT-P-ESGMHRTQLSPDGSAIIDIFQ 420 (706)
T ss_dssp EEEETTCCC-CEESC-C-SSSEEEEEECTTSSEEEEEEE
T ss_pred EEEEcCCCC-ceecc-C-CCceEEEEECCCCCEEEEEec
Confidence 777887765 33333 4 667999999999998877644
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.82 E-value=1.9e-18 Score=159.51 Aligned_cols=233 Identities=7% Similarity=-0.028 Sum_probs=152.0
Q ss_pred eeeCCCCCeEEEEecCCcEEEEecccc---ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcE
Q 020454 59 IDDSQNDPLLAVARKNGLTDILNPLNG---DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA 135 (326)
Q Consensus 59 ~~~~~~~~~l~~g~~dg~i~i~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v 135 (326)
..+++++++|++++. +.|.+||+.++ +. ..+. .+...+..+.+.+ ++..|+.++ ++.|
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~-~~l~--------~~~~~~~~~~~SP--------DG~~la~~~-~~~i 174 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV-RQLT--------HGEGFATDAKLSP--------KGGFVSFIR-GRNL 174 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSC-CBCC--------CSSSCEEEEEECT--------TSSEEEEEE-TTEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceE-EEcc--------cCCcccccccCCC--------CCCEEEEEe-CCcE
Confidence 345667778888886 99999999877 43 2222 2335677777654 445566555 6799
Q ss_pred EEEEccccccccccccceEEEEEc-------cCCCceEEEEEcCCCCEEEEecCCC------------------------
Q 020454 136 SMRSIEVTKVSAESSCSTVKSWNV-------CASGTIAFSKVDISEKFSLFGGKGV------------------------ 184 (326)
Q Consensus 136 ~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~sg~~d~------------------------ 184 (326)
++|++...........+.-.+..- .....+..+.|+|++++|++++.|+
T Consensus 175 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 175 WVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp EEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred EEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 999976532110000000000000 0001247799999999999887665
Q ss_pred ---------eEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-----CCeEEEEeCCCCCC
Q 020454 185 ---------EVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----DHQVRLYDTSAQRR 249 (326)
Q Consensus 185 ---------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-----dg~v~iwd~~~~~~ 249 (326)
.|.+||+.+ ++........ .+...+..++| | +++.|++.+. +..|++||+.++ +
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~-p--Dg~~l~~~~~~~~~~~~~i~~~d~~~g-~ 323 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQTQWIDLGK-------EQDIYLARVNW-R--DPQHLSFQRQSRDQKKLDLVEVTLASN-Q 323 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCCCEEECCCS-------CSSEEEEEEEE-E--ETTEEEEEEEETTSSEEEEEEEETTTC-C
T ss_pred CCCCCCCeeEEEEEECCCCCceEEecCCC-------CcceEEEEEEe-C--CCCEEEEEEecccCCeEEEEEEECCCC-c
Confidence 788899987 6654332110 12356889999 8 5667776543 578999999977 4
Q ss_pred ceeEEeecCC----ceEEEEecCCCCeEEEEcCCCcEEEEECC-CCeEEEEEcceecceEEEE-EECCCCCEEEE-eccC
Q 020454 250 PVMSFDFRET----PIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSI-ARHPTLPIIAS-CGFL 322 (326)
Q Consensus 250 ~~~~~~~~~~----~i~~v~~s~~~~~l~~g~~dg~v~iwd~~-~~~~~~~~~~~~~~~v~~l-~~~p~~~~l~s-~s~D 322 (326)
....+..+.. .+..++|+|||+++++++.+|.++||.+. +++ ...+..| ...|.++ .|+|+++.|+. ++.|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~-~~~v~~~~~~s~dg~~l~~~~~~~ 401 (741)
T 2ecf_A 324 QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG-NWSVDELLAVDEKAGLAYFRAGIE 401 (741)
T ss_dssp EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS-SSCEEEEEEEETTTTEEEEEECSS
T ss_pred eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec-ceEEEeEeEEeCCCCEEEEEEeCC
Confidence 4444444432 45688999999988899999988888765 445 6677776 7788887 59999987654 4444
Q ss_pred c
Q 020454 323 E 323 (326)
Q Consensus 323 ~ 323 (326)
+
T Consensus 402 ~ 402 (741)
T 2ecf_A 402 S 402 (741)
T ss_dssp C
T ss_pred C
Confidence 3
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=1.1e-18 Score=160.23 Aligned_cols=271 Identities=10% Similarity=0.028 Sum_probs=167.8
Q ss_pred eeeeeecCcccEEEEEecCCcCCC-cceeeecc-------CCC-----CCceEEEEEeeeCCCCCeEEEEecCCcEEEEe
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGV-PKVVERWG-------DPH-----SSNCVLAASIDDSQNDPLLAVARKNGLTDILN 81 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~-~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~ 81 (326)
-++++...+| | +||+.++. .. ..+. ... ..+ ....+..+.+.. + +.++.+ .++.|++||
T Consensus 36 ~~~~~~~~~~-i-~~d~~tg~-~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp--d-~~~~~~-~~~~i~~~d 107 (706)
T 2z3z_A 36 DNYVFIEGDD-L-VFNKANGK-SAQTTRF-SAADLNALMPEGCKFQTTDAFPSFRTLDAG--R-GLVVLF-TQGGLVGFD 107 (706)
T ss_dssp TEEEEEETTE-E-EEEC--------CEEE-EHHHHHTTC-----------CCCEEEEETT--T-TEEEEE-ETTEEEEEE
T ss_pred CeEEEEeCCc-E-EEECCCCc-EeeEEee-chhHhhhhccchhccccccccCceeEEECC--C-CeEEEE-ECCEEEEEE
Confidence 4677777888 7 99998771 10 1111 110 000 012344555543 3 345555 569999999
Q ss_pred ccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc-----cccccccccceEEE
Q 020454 82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV-----TKVSAESSCSTVKS 156 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~-----~~~~~~~~~~~~~~ 156 (326)
+.+++...... +...+..+.+.+ ++..++. ..++.|++|++.. .........+.-.+
T Consensus 108 ~~~~~~~~l~~---------~~~~~~~~~~Sp--------dG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 108 MLARKVTYLFD---------TNEETASLDFSP--------VGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp TTTTEEEEEEC---------CTTCCTTCEECT--------TSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred CCCCceEEccC---------CcccccCCcCCC--------CCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 98876643322 123455566544 4455655 5789999999875 32110000000000
Q ss_pred EE-----ccCCCceEEEEEcCCCCEEEEec---------------------------------CCCeEEEEECCCceeee
Q 020454 157 WN-----VCASGTIAFSKVDISEKFSLFGG---------------------------------KGVEVNVWDLDKCEKIW 198 (326)
Q Consensus 157 ~~-----~~~~~~v~~~~~~~~~~~l~sg~---------------------------------~d~~i~iwd~~~~~~~~ 198 (326)
.. -.+...+.++.|+|++++|++++ .+..|.+||+.+++...
T Consensus 170 ~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~ 249 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY 249 (706)
T ss_dssp EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence 00 00011257899999999999887 44679999999887544
Q ss_pred eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-----eEEEEeCCCCCCceeEEe--ecCC---ceEEEEecC
Q 020454 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLYDTSAQRRPVMSFD--FRET---PIKAVAEEP 268 (326)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~--~~~~---~i~~v~~s~ 268 (326)
..... .+...+..++|+| +++.|++++.++ .|++||+.+++ ....+. .+.. .+..++|+|
T Consensus 250 ~~~~~-------~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~v~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~sp 319 (706)
T 2z3z_A 250 LQTGE-------PKEKFLTNLSWSP--DENILYVAEVNRAQNECKVNAYDAETGR-FVRTLFVETDKHYVEPLHPLTFLP 319 (706)
T ss_dssp CCCCS-------CTTCEEEEEEECT--TSSEEEEEEECTTSCEEEEEEEETTTCC-EEEEEEEEECSSCCCCCSCCEECT
T ss_pred eccCC-------CCceeEeeEEEEC--CCCEEEEEEeCCCCCeeEEEEEECCCCc-eeeEEEEccCCCeECccCCceeec
Confidence 32211 1234688999998 666888877665 99999998762 233332 2222 246789999
Q ss_pred --CCCeEEEEcCCCcEEEEECC-CCeEEEEEcceecceEEE-EEECCCCCEEEEeccC
Q 020454 269 --DSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGFL 322 (326)
Q Consensus 269 --~~~~l~~g~~dg~v~iwd~~-~~~~~~~~~~~~~~~v~~-l~~~p~~~~l~s~s~D 322 (326)
+|+++++++.+|.+++|++. +++.+..+..+ ...+.+ ++|+|+++.|+.++.+
T Consensus 320 ~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~-~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 320 GSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG-EWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp TCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS-SSCEEEEEEECTTSSEEEEEESS
T ss_pred CCCCEEEEEEccCCccEEEEEECCCCEEEecCCC-CeEEEeeeEEcCCCCEEEEEecC
Confidence 99999999999999999886 67777777776 777877 7999999877665544
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.82 E-value=3e-17 Score=136.66 Aligned_cols=218 Identities=9% Similarity=-0.006 Sum_probs=151.0
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec-CCcEEEEEcccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVT 143 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~-~g~v~i~~~~~~ 143 (326)
..++++++.++.|.+||..+++.+..+.. +...+ ++.+.+ ++..+++++. ++.|.+||+...
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--------~~~~~-~~~~s~--------dg~~l~~~~~~~~~i~~~d~~~~ 72 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITL--------GYDFV-DTAITS--------DCSNVVVTSDFCQTLVQIETQLE 72 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEEC--------CCCEE-EEEECS--------SSCEEEEEESTTCEEEEEECSSS
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEc--------cCCcc-eEEEcC--------CCCEEEEEeCCCCeEEEEECCCC
Confidence 33578888899999999998888766652 12344 677544 4455655555 889999997653
Q ss_pred ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCC---eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeE
Q 020454 144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV---EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (326)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (326)
.. ....... ...+..+++++|++++|+++..++ .|.+||+.+++.+..+... ....+++
T Consensus 73 ~~-------~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~----------~~~~~~~ 134 (331)
T 3u4y_A 73 PP-------KVVAIQE-GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP----------YDAVGIA 134 (331)
T ss_dssp SC-------EEEEEEE-CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC----------TTEEEEE
T ss_pred ce-------eEEeccc-CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC----------CCccceE
Confidence 31 1223322 223344499999999998655553 8999999998877665432 2357889
Q ss_pred EeecCCCc-EEEEEeCCCe-EEEEeCCCCCCce---eEEeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeE--
Q 020454 221 FLSIDDHR-KFVAGTNDHQ-VRLYDTSAQRRPV---MSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKL-- 292 (326)
Q Consensus 221 ~~p~~~~~-~l~~~~~dg~-v~iwd~~~~~~~~---~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~-- 292 (326)
|+| +++ ++++...++. |.+|++....... ............++|+|+|++++ ++..++.|++||+.+++.
T Consensus 135 ~sp--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 135 ISP--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT 212 (331)
T ss_dssp ECT--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred ECC--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence 998 454 4555566678 9999988542211 11113345678999999999766 555689999999999887
Q ss_pred -EEEEcceecceEEEEEECCCCCEEEEecc
Q 020454 293 -LGCFIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 293 -~~~~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
+..+.. ...+..++|+|++++|+.++.
T Consensus 213 ~~~~~~~--~~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 213 LLNAVGT--NNLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp EEEEEEC--SSCCCCEEECTTSSEEEEECS
T ss_pred eeeeccC--CCCCceEEECCCCCEEEEEEc
Confidence 777763 467789999999997765543
No 146
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=2.1e-18 Score=148.78 Aligned_cols=205 Identities=13% Similarity=0.054 Sum_probs=135.3
Q ss_pred CCCeEEEEecCCcEEEEecccccee-------eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE----EEecC
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDLR-------VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL----TCTTK 132 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~----~~~~~ 132 (326)
...++++++.+| |++|+...-... ...........-.+...|.++.+.+ ++..|+ +++.|
T Consensus 47 ~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--------dg~~lav~~~sgs~d 117 (434)
T 2oit_A 47 KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC--------DNLTLSACMMSSEYG 117 (434)
T ss_dssp TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT--------TSCEEEEEEEETTTE
T ss_pred CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC--------CCCEEEEEEeccCCC
Confidence 455788888888 899876421110 0000000000002235688888755 556777 67889
Q ss_pred CcEEEEEccccccccccccceEEEEEc--cCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454 133 GKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG 209 (326)
Q Consensus 133 g~v~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 209 (326)
+.|++||+.............+..... .+...|.+++|+|+ +++|++++.|++|++||++++..+.....|
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~------ 191 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS------ 191 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG------
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC------
Confidence 999999987541100000011112221 24678999999998 799999999999999999988665544332
Q ss_pred cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec-------CCceEEEEecCCCCeEEE-EcCCC-
Q 020454 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-------ETPIKAVAEEPDSFNIYI-GNGSG- 280 (326)
Q Consensus 210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-------~~~i~~v~~s~~~~~l~~-g~~dg- 280 (326)
...|++++|+| ++++|++++.||+|++||++ + .....+..+ ...+.+++|++++.++++ +..+|
T Consensus 192 ---~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 192 ---TVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-L-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp ---GGCEEEEEECT--TSSCEEEEETTSCEEEECTT-C-CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ---CCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-C-cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 25689999998 57799999999999999998 4 334444433 237999999998877763 33443
Q ss_pred -----cEEEEECCCC
Q 020454 281 -----DLASVDIRTG 290 (326)
Q Consensus 281 -----~v~iwd~~~~ 290 (326)
.+++|+++..
T Consensus 265 ~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 265 LETSPDVVMALLPKK 279 (434)
T ss_dssp SSSCCEEEEEECCCT
T ss_pred cCCCCceEEEEeccC
Confidence 3899999864
No 147
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=7.1e-16 Score=130.02 Aligned_cols=271 Identities=10% Similarity=0.019 Sum_probs=157.8
Q ss_pred eeeeecCc----ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEeccccceeee
Q 020454 16 RALTFDSL----GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVA 90 (326)
Q Consensus 16 ~l~~~~~~----G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~~~~~~~ 90 (326)
+|++++.+ |.|++|++... .+..+......... .....+++ .+++|+++. .++.|.+|++.....+..
T Consensus 63 ~l~~~~~~~~~~~~v~~~~~~~~-~g~~~~~~~~~~~~--~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~ 135 (361)
T 3scy_A 63 FVYSVNEFSKDQAAVSAFAFDKE-KGTLHLLNTQKTMG--ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLP 135 (361)
T ss_dssp EEEEEECCSSTTCEEEEEEEETT-TTEEEEEEEEECSS--SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCS
T ss_pred EEEEEEccCCCCCcEEEEEEeCC-CCcEEEeeEeccCC--CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcc
Confidence 46666654 89999999863 23333332222122 22223333 344566555 689999999964433222
Q ss_pred ecc---cC---CCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccccccccc-c---ceEEEEEc
Q 020454 91 ISN---AG---DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESS-C---STVKSWNV 159 (326)
Q Consensus 91 ~~~---~~---~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~~~-~---~~~~~~~~ 159 (326)
+.. .. +.+.......+.++.+.+ ++..++++ ..++.+.+|+++......... - +.......
T Consensus 136 ~~~~~~~~g~~~~~~~~~~~~~~~~~~sp--------dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (361)
T 3scy_A 136 ASDVIEFKGSGPDKERQTMPHLHCVRITP--------DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV 207 (361)
T ss_dssp CSEEEECCCCCSCTTTCSSCCEEEEEECT--------TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred cceeEEccCCCCCccccCCCcceEEEECC--------CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence 211 00 000011122334566544 45555554 458899999987533100000 0 01123444
Q ss_pred cCCCceEEEEEcCCCCEEEEec-CCCeEEEEECCCcee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-
Q 020454 160 CASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN- 235 (326)
Q Consensus 160 ~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~- 235 (326)
........++|+|+++++++++ .++.|.+||+.+++. +........ .......++|+| ++++|+++..
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~------~~~~~~~i~~sp--dg~~l~v~~~~ 279 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV------NAQGSGDIHLSP--DGKYLYASNRL 279 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS------CCCCEEEEEECT--TSSEEEEEECS
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC------CCCCcccEEECC--CCCEEEEECCC
Confidence 4566788999999999877666 689999999987654 222222111 113357889998 5667766555
Q ss_pred -CCeEEEEeCCCC-CC--ceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEE--ECCCCeEEEEEcceecceEEEEE
Q 020454 236 -DHQVRLYDTSAQ-RR--PVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASV--DIRTGKLLGCFIGKCSGSIRSIA 308 (326)
Q Consensus 236 -dg~v~iwd~~~~-~~--~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iw--d~~~~~~~~~~~~~~~~~v~~l~ 308 (326)
++.|.+|++... .. .+..+.. ...+..++|+|+|++|++++ .++.|.+| |..++++...........+.+|.
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~ 358 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLK 358 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEE
T ss_pred CCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEE
Confidence 489999998621 12 2333433 45678999999999998777 67899996 55577765433221255788888
Q ss_pred EC
Q 020454 309 RH 310 (326)
Q Consensus 309 ~~ 310 (326)
|.
T Consensus 359 ~~ 360 (361)
T 3scy_A 359 FV 360 (361)
T ss_dssp EE
T ss_pred Ec
Confidence 85
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.81 E-value=6.2e-18 Score=156.01 Aligned_cols=242 Identities=13% Similarity=0.031 Sum_probs=161.0
Q ss_pred eCCCCCeEEEEec-CC-----cEEEEeccccceeeeecccCCCC----------CC------CCCCCeeeeecccccccc
Q 020454 61 DSQNDPLLAVARK-NG-----LTDILNPLNGDLRVAISNAGDSG----------AQ------PEDDGIVGLHLFKRQREE 118 (326)
Q Consensus 61 ~~~~~~~l~~g~~-dg-----~i~i~~~~~~~~~~~~~~~~~~~----------~~------~~~~~i~~l~~~~~~~~~ 118 (326)
+++++++|++++. || .|++||+.+++....+......+ .. .+...+..+.+.+
T Consensus 44 ~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp----- 118 (741)
T 2ecf_A 44 VAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP----- 118 (741)
T ss_dssp ECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT-----
T ss_pred EecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC-----
Confidence 3566778999988 88 99999998887655443211000 00 0001245566544
Q ss_pred cCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeee
Q 020454 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (326)
Q Consensus 119 ~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~ 198 (326)
++..|++++. +.|++|++...... . ...+ ..+...+..++|+|+|++|+.++ ++.|.+||+.+++...
T Consensus 119 ---Dg~~l~~~~~-~~i~~~d~~~~~~~---~--~~~l--~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 119 ---DAQRLLFPLG-GELYLYDLKQEGKA---A--VRQL--THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp ---TSSEEEEEET-TEEEEEESSSCSTT---S--CCBC--CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred ---CCCEEEEEeC-CcEEEEECCCCCcc---e--EEEc--ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 5556666665 99999998754100 0 0001 12245789999999999999876 4699999999877654
Q ss_pred eecCCCCCCCCcCCCC--------ceeeeEEeecCCCcEEEEEeCCC---------------------------------
Q 020454 199 TAKPPPKNSLGIFTPT--------WFTSAAFLSIDDHRKFVAGTNDH--------------------------------- 237 (326)
Q Consensus 199 ~~~~~~~~~~~~~~~~--------~v~~~~~~p~~~~~~l~~~~~dg--------------------------------- 237 (326)
........ .....+. .+.+++|+| ++++|++++.|+
T Consensus 187 ~~~~~~~~-~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 187 LTADGSTT-IGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp CCCCCCSS-EEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred eccCCccc-eeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 43322110 0000011 146789998 677888887665
Q ss_pred eEEEEeCCC-CCCceeEEe--ecCCceEEEEecCCCCeEEEEcC-----CCcEEEEECCCCeEEEEEcceecc----eEE
Q 020454 238 QVRLYDTSA-QRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNG-----SGDLASVDIRTGKLLGCFIGKCSG----SIR 305 (326)
Q Consensus 238 ~v~iwd~~~-~~~~~~~~~--~~~~~i~~v~~s~~~~~l~~g~~-----dg~v~iwd~~~~~~~~~~~~~~~~----~v~ 305 (326)
.|++||+.+ + +...... .+...+..++| |||++|++++. +..|++||+.+++....+..+ .. .+.
T Consensus 264 ~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~ 340 (741)
T 2ecf_A 264 KLGVISPAEQA-QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET-SPTWVPLHN 340 (741)
T ss_dssp EEEEECSSTTC-CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE-CSSCCCCCS
T ss_pred EEEEEECCCCC-ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC-CCCcCCcCC
Confidence 889999987 6 3332221 35678899999 99999996653 567999999999887777655 33 456
Q ss_pred EEEECCCCCEEEEeccCccC
Q 020454 306 SIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 306 ~l~~~p~~~~l~s~s~D~~~ 325 (326)
+++|+|+++++++++.||..
T Consensus 341 ~~~~spdg~~~~~~~~~g~~ 360 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTGFQ 360 (741)
T ss_dssp CCEECTTSCEEEEECTTSSC
T ss_pred ceEECCCCeEEEEecCCCcc
Confidence 89999999999999988753
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=3.5e-16 Score=131.91 Aligned_cols=267 Identities=10% Similarity=0.038 Sum_probs=161.4
Q ss_pred eeeeeec----CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecC----CcEEEEeccc--
Q 020454 15 LRALTFD----SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN----GLTDILNPLN-- 84 (326)
Q Consensus 15 ~~l~~~~----~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d----g~i~i~~~~~-- 84 (326)
.+++.|+ .++.|.+|++... .+..+..... .. ..... +. .++++++|++++.+ +.|.+|++..
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~-~g~~~~~~~~-~~-~~p~~--l~--~spdg~~l~~~~~~~~~~~~v~~~~~~~~~ 86 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEE-TGESLPLSDA-EV-ANPSY--LI--PSADGKFVYSVNEFSKDQAAVSAFAFDKEK 86 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETT-TCCEEEEEEE-EC-SCCCS--EE--ECTTSSEEEEEECCSSTTCEEEEEEEETTT
T ss_pred eEEEEEeccCCCCCCEEEEEEeCC-CCCEEEeecc-cC-CCCce--EE--ECCCCCEEEEEEccCCCCCcEEEEEEeCCC
Confidence 5667774 4568999998754 3433333333 11 11111 22 24556788888875 8999998865
Q ss_pred cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEEEEEcc---
Q 020454 85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVC--- 160 (326)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~--- 160 (326)
+++ ..+.... .+......+.+ ++..++++. .++.+.+|++........ ........
T Consensus 87 g~~-~~~~~~~-----~~~~~p~~~~~----------dg~~l~~~~~~~~~v~~~~~~~~g~~~~----~~~~~~~~g~~ 146 (361)
T 3scy_A 87 GTL-HLLNTQK-----TMGADPCYLTT----------NGKNIVTANYSGGSITVFPIGQDGALLP----ASDVIEFKGSG 146 (361)
T ss_dssp TEE-EEEEEEE-----CSSSCEEEEEE----------CSSEEEEEETTTTEEEEEEBCTTSCBCS----CSEEEECCCCC
T ss_pred CcE-EEeeEec-----cCCCCcEEEEE----------CCCEEEEEECCCCEEEEEEeCCCCcCcc----cceeEEccCCC
Confidence 443 2222110 12234455654 234455554 688999999875332111 11111111
Q ss_pred ------CCCceEEEEEcCCCCEEEE-ecCCCeEEEEECCCcee------ee------eecCCCCCCCCcCCCCceeeeEE
Q 020454 161 ------ASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEK------IW------TAKPPPKNSLGIFTPTWFTSAAF 221 (326)
Q Consensus 161 ------~~~~v~~~~~~~~~~~l~s-g~~d~~i~iwd~~~~~~------~~------~~~~~~~~~~~~~~~~~v~~~~~ 221 (326)
....+.+++++|++++|++ ...++.|.+|++..... +. .... .....+..++|
T Consensus 147 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~ 218 (361)
T 3scy_A 147 PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV--------APGSGPRHLIF 218 (361)
T ss_dssp SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC--------CTTCCEEEEEE
T ss_pred CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec--------CCCCCCeEEEE
Confidence 1224688999999986655 44588999999875431 11 1111 11234678999
Q ss_pred eecCCCcEEEEEe-CCCeEEEEeCCCCCCc--eeEEee---cCCceEEEEecCCCCeEEEEcCC--CcEEEEECC--CCe
Q 020454 222 LSIDDHRKFVAGT-NDHQVRLYDTSAQRRP--VMSFDF---RETPIKAVAEEPDSFNIYIGNGS--GDLASVDIR--TGK 291 (326)
Q Consensus 222 ~p~~~~~~l~~~~-~dg~v~iwd~~~~~~~--~~~~~~---~~~~i~~v~~s~~~~~l~~g~~d--g~v~iwd~~--~~~ 291 (326)
+| +++++++++ .++.|.+||+.++ .. +..+.. +......++|+|+|++|+++..+ +.|.+|++. +++
T Consensus 219 sp--dg~~l~v~~~~~~~v~v~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~ 295 (361)
T 3scy_A 219 NS--DGKFAYLINEIGGTVIAFRYADG-MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT 295 (361)
T ss_dssp CT--TSSEEEEEETTTCEEEEEEEETT-EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred cC--CCCEEEEEcCCCCeEEEEEecCC-ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence 98 566666665 6899999998854 21 222221 22346799999999999766654 899999996 454
Q ss_pred --EEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454 292 --LLGCFIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 292 --~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
.+..+.. ...+.+++|+|++++|++++.
T Consensus 296 ~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~ 325 (361)
T 3scy_A 296 LTKVGYQLT--GIHPRNFIITPNGKYLLVACR 325 (361)
T ss_dssp EEEEEEEEC--SSCCCEEEECTTSCEEEEEET
T ss_pred EEEeeEecC--CCCCceEEECCCCCEEEEEEC
Confidence 3333432 346789999999998888874
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=1.1e-17 Score=153.90 Aligned_cols=271 Identities=8% Similarity=-0.012 Sum_probs=166.6
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCC-ceEEEEEeeeCCCCCeEEEEecC---------CcEEEEeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLAASIDDSQNDPLLAVARKN---------GLTDILNPLN 84 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~d---------g~i~i~~~~~ 84 (326)
-+++..+.+|.|++||+.++ +.......+... ..+..+. .++++++|++++.+ +.|.+||+.+
T Consensus 28 g~~~~~~~dg~i~~~d~~~g-----~~~~~~~~~~~~~~~v~~~~--~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 100 (723)
T 1xfd_A 28 TEFIYREQKGTVRLWNVETN-----TSTVLIEGKKIESLRAIRYE--ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (723)
T ss_dssp SCBCCCCSSSCEEEBCGGGC-----CCEEEECTTTTTTTTCSEEE--ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred CcEEEEeCCCCEEEEECCCC-----cEEEEeccccccccccceEE--ECCCCCEEEEEecCccceeecceeeEEEEECCC
Confidence 34556688999999999877 222233222211 1122333 35567789988775 7888999988
Q ss_pred cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCC--
Q 020454 85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS-- 162 (326)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-- 162 (326)
++. ..+... ..+...+..+.+.+ ++..|+.++. +.|++|++.... ..++......
T Consensus 101 ~~~-~~l~~~-----~~~~~~~~~~~~SP--------dG~~la~~~~-~~i~~~~~~~g~--------~~~~~~~~~~~~ 157 (723)
T 1xfd_A 101 GDP-QSLDPP-----EVSNAKLQYAGWGP--------KGQQLIFIFE-NNIYYCAHVGKQ--------AIRVVSTGKEGV 157 (723)
T ss_dssp CCC-EECCCT-----TCCSCCCSBCCBCS--------STTCEEEEET-TEEEEESSSSSC--------CEEEECCCBTTT
T ss_pred Cce-EeccCC-----ccccccccccEECC--------CCCEEEEEEC-CeEEEEECCCCc--------eEEEecCCCCCc
Confidence 775 333221 12223466566544 5556766665 889999876433 1122211111
Q ss_pred ---------------CceEEEEEcCCCCEEEEecCCC----------------------------------eEEEEECCC
Q 020454 163 ---------------GTIAFSKVDISEKFSLFGGKGV----------------------------------EVNVWDLDK 193 (326)
Q Consensus 163 ---------------~~v~~~~~~~~~~~l~sg~~d~----------------------------------~i~iwd~~~ 193 (326)
..+..++|+|++++|++++.|+ .|.+||+.+
T Consensus 158 ~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~ 237 (723)
T 1xfd_A 158 IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG 237 (723)
T ss_dssp EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence 1237899999999999887543 789999988
Q ss_pred ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC----CCeEEEEeCCCCCCceeEEee-cCCce----EEE
Q 020454 194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQRRPVMSFDF-RETPI----KAV 264 (326)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~-~~~~i----~~v 264 (326)
++....+..+... ..+...+..++|+| +++++++... +..|++||+.++ +....+.. +...+ ..+
T Consensus 238 ~~~~~~l~~~~~~---~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~ 311 (723)
T 1xfd_A 238 PTHDLEMMPPDDP---RMREYYITMVKWAT--STKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEP 311 (723)
T ss_dssp SCCCEECCCCCCG---GGSSEEEEEEEESS--SSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCC
T ss_pred CceeEEeeCCccC---CCccceeEEEEEeC--CCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCCc
Confidence 7754444332100 11235688999998 6667766542 368999999876 43433333 33333 378
Q ss_pred EecCCCCeEEE--EcCCC------cEEEEE-CCCCe--EEEEEcceecceEEE-EEECCCCCEEEEeccC
Q 020454 265 AEEPDSFNIYI--GNGSG------DLASVD-IRTGK--LLGCFIGKCSGSIRS-IARHPTLPIIASCGFL 322 (326)
Q Consensus 265 ~~s~~~~~l~~--g~~dg------~v~iwd-~~~~~--~~~~~~~~~~~~v~~-l~~~p~~~~l~s~s~D 322 (326)
+|+|||+.|+. +..++ .|++|| ..+++ ....+..+ ...+.. ++|+|+++.|+..+.+
T Consensus 312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~~~~~spdg~~l~~~~~~ 380 (723)
T 1xfd_A 312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-DWDVTKILAYDEKGNKIYFLSTE 380 (723)
T ss_dssp EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-SSCEEEEEEEETTTTEEEEEESS
T ss_pred eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-CeEEEeeeEEcCCCCEEEEEEcC
Confidence 99999998774 45667 577777 34444 14444433 334544 6999999998776655
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.81 E-value=1.4e-17 Score=158.99 Aligned_cols=263 Identities=11% Similarity=0.012 Sum_probs=177.6
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~ 95 (326)
.+++++.+|.+++|.+... .+..+ ...... .... ..+. +++++|+.+ .++.|.+|++...++ ..+....
T Consensus 216 l~~~~~~dg~~~l~~~~~~-g~~~~---~l~~~~-~~~~--~~~S--pDG~~la~~-~~~~i~~~d~~~~~l-~~l~~~~ 284 (1045)
T 1k32_A 216 IYFITDIDGFGQIYSTDLD-GKDLR---KHTSFT-DYYP--RHLN--TDGRRILFS-KGGSIYIFNPDTEKI-EKIEIGD 284 (1045)
T ss_dssp EEEEECTTSSCEEEEEETT-SCSCE---ECCCCC-SSCE--EEEE--ESSSCEEEE-ETTEEEEECTTTCCE-EECCCCC
T ss_pred EEEEEeccCceEEEEEeCC-CCcce---EecCCC-Ccce--eeEc--CCCCEEEEE-eCCEEEEecCCceEe-eeeccCc
Confidence 3456778899999998753 12111 122111 1222 2333 345567776 589999999954433 2322100
Q ss_pred CCC---CCCCCCCeeeeecc-cccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCC-ceEEEEE
Q 020454 96 DSG---AQPEDDGIVGLHLF-KRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG-TIAFSKV 170 (326)
Q Consensus 96 ~~~---~~~~~~~i~~l~~~-~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 170 (326)
... ...+...+..+.+. + ++..++.++ ++.+.+|++.... .+.. ..+.. .+..++|
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~p--------dG~~la~~~-~~~i~~~~~~~~~---------~~~~-~~~~~~~~~~~~~ 345 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPL--------DGDLIAFVS-RGQAFIQDVSGTY---------VLKV-PEPLRIRYVRRGG 345 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEEC--------GGGCEEEEE-TTEEEEECTTSSB---------EEEC-SCCSCEEEEEECS
T ss_pred ccccccccccccccceeeecCC--------CCCEEEEEE-cCEEEEEcCCCCc---------eEEc-cCCCcceEEeeeE
Confidence 000 00012246666665 4 445666665 8889999865322 1111 12334 7889999
Q ss_pred cCCCCEEEEecCCCeEE-EEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454 171 DISEKFSLFGGKGVEVN-VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (326)
Q Consensus 171 ~~~~~~l~sg~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~ 249 (326)
+ +++.|++++.+..+. +||+.+++.... ..+ ...+..++|+| ++++|++++.++.|++||+.++ +
T Consensus 346 s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~---------~~~~~~~~~Sp--DG~~la~~~~~~~v~~~d~~tg-~ 411 (1045)
T 1k32_A 346 D-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EEN---------LGNVFAMGVDR--NGKFAVVANDRFEIMTVDLETG-K 411 (1045)
T ss_dssp S-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCC---------CCSEEEEEECT--TSSEEEEEETTSEEEEEETTTC-C
T ss_pred c-CCCeEEEEECCCceEEEEECCCCCceEe-cCC---------ccceeeeEECC--CCCEEEEECCCCeEEEEECCCC-c
Confidence 9 999898888888888 999887654322 222 24578999998 6779999999999999999976 4
Q ss_pred ceeEEeecCCceEEEEecCCCCeEEEEcCCC----------cEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG----------DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg----------~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
.......+...+..++|+|||++|++++.++ .|++||+.+++ +..+..| ...+..++|+|++++|+.+
T Consensus 412 ~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~-~~~~~~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 412 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTE-NSHDYAPAFDADSKNLYYL 489 (1045)
T ss_dssp EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCS-SSBEEEEEECTTSCEEEEE
T ss_pred eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCC-CcccCCceEcCCCCEEEEE
Confidence 4555557888899999999999999777654 89999999887 5667776 7889999999999999988
Q ss_pred ccCcc
Q 020454 320 GFLEA 324 (326)
Q Consensus 320 s~D~~ 324 (326)
+.++.
T Consensus 490 s~~~~ 494 (1045)
T 1k32_A 490 SYRSL 494 (1045)
T ss_dssp ESCCC
T ss_pred ecccC
Confidence 87653
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.79 E-value=1.6e-16 Score=133.20 Aligned_cols=252 Identities=12% Similarity=0.133 Sum_probs=149.6
Q ss_pred eeeeecC---cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEecc-ccceeee
Q 020454 16 RALTFDS---LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPL-NGDLRVA 90 (326)
Q Consensus 16 ~l~~~~~---~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~-~~~~~~~ 90 (326)
++++++. ++.|++|++.++ ..+............. .+.+ ++++++|++++ .++.|.+|++. ++.. ..
T Consensus 52 ~l~~~~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~p~--~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~-~~ 123 (347)
T 3hfq_A 52 CLYSVDKEDDEGGIAAWQIDGQ---TAHKLNTVVAPGTPPA--YVAV--DEARQLVYSANYHKGTAEVMKIAADGAL-TL 123 (347)
T ss_dssp EEEEEEEETTEEEEEEEEEETT---EEEEEEEEEEESCCCS--EEEE--ETTTTEEEEEETTTTEEEEEEECTTSCE-EE
T ss_pred eEEEEEecCCCceEEEEEecCC---cEEEeeeeecCCCCCE--EEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCe-ee
Confidence 4665554 689999999765 1112222111122222 2333 34556777777 78999999995 3332 22
Q ss_pred ecccCCCC----CCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceE
Q 020454 91 ISNAGDSG----AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (326)
Q Consensus 91 ~~~~~~~~----~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 166 (326)
+....... .......+.++.+.+ ++..+++...++.|.+|+++.... ...+............
T Consensus 124 ~~~~~~~~~~p~~~~~~~~~~~~~~sp--------dg~l~v~~~~~~~v~~~~~~~~g~-----~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 124 TDTVQHSGHGPRPEQDGSHIHYTDLTP--------DNRLAVIDLGSDKVYVYNVSDAGQ-----LSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EEEEECCCCCSSTTCSSCCEEEEEECT--------TSCEEEEETTTTEEEEEEECTTSC-----EEEEEEEECCTTCCEE
T ss_pred cceeecCCCCCCccccCCCceEEEECC--------CCcEEEEeCCCCEEEEEEECCCCc-----EEEeeeEEcCCCCCCc
Confidence 22110000 001112355566544 444555566688999999873211 1122223333445678
Q ss_pred EEEEcCCCCEEEE-ecCCCeEEEEECCC--cee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE-EEEeCCCeEE
Q 020454 167 FSKVDISEKFSLF-GGKGVEVNVWDLDK--CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVR 240 (326)
Q Consensus 167 ~~~~~~~~~~l~s-g~~d~~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-~~~~~dg~v~ 240 (326)
.++|+|+++++++ ...++.|.+|++.. ++. +......... ......+..++|+| ++++| ++...++.|.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~i~~sp--dG~~l~v~~~~~~~v~ 265 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD---YTAHNGAAAIRLSH--DGHFLYVSNRGYNTLA 265 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT---CCSCCEEEEEEECT--TSCEEEEEEETTTEEE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC---CCCCCcceeEEECC--CCCEEEEEeCCCCEEE
Confidence 8999999986555 56788999999874 432 2222222211 11124578899998 56666 5666789999
Q ss_pred EEeCCCCC--CceeEEeecCCceEEEEecCCCCeEEEEcC-CCcEEEE--ECCCCeEE
Q 020454 241 LYDTSAQR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASV--DIRTGKLL 293 (326)
Q Consensus 241 iwd~~~~~--~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iw--d~~~~~~~ 293 (326)
+||+.... ..+..+..+...+..++|+|+|++|++++. ++.|.+| |..++++.
T Consensus 266 v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 266 VFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 99987321 234445555567889999999999887765 4899999 55667654
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=2.6e-17 Score=147.73 Aligned_cols=251 Identities=12% Similarity=0.035 Sum_probs=163.0
Q ss_pred eeeeeecC-cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec---CCcEEEEeccc--ccee
Q 020454 15 LRALTFDS-LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLN--GDLR 88 (326)
Q Consensus 15 ~~l~~~~~-~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---dg~i~i~~~~~--~~~~ 88 (326)
-+|+.++. +|.++||++.++ +.. +.... ....+....|. ++ ++++++.. +...++|.+.. ....
T Consensus 34 ~~la~~s~~~g~~~lw~~~~g-----~~~-~lt~~-~~~~~~~~~~s--pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~ 103 (582)
T 3o4h_A 34 DKLLVVGFSEGSVNAYLYDGG-----ETV-KLNRE-PINSVLDPHYG--VG-RVILVRDVSKGAEQHALFKVNTSRPGEE 103 (582)
T ss_dssp TEEEEEEEETTEEEEEEEETT-----EEE-ECCSS-CCSEECEECTT--CS-EEEEEEECSTTSCCEEEEEEETTSTTCC
T ss_pred CeEEEEEccCCceeEEEEcCC-----CcE-eeecc-cccccccccCC--CC-eEEEEeccCCCCcceEEEEEeccCCCcc
Confidence 35665555 999999999765 222 22211 11233344443 33 56776665 45567765543 2111
Q ss_pred eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 168 (326)
..+.. . .......+.+. .+..+++...++.+.+|+++... ..++... .. .++
T Consensus 104 ~~l~~-------~--~~~~~~~~s~d-------g~~~~~~s~~~~~~~l~d~~~g~--------~~~l~~~--~~--~~~ 155 (582)
T 3o4h_A 104 QRLEA-------V--KPMRILSGVDT-------GEAVVFTGATEDRVALYALDGGG--------LRELARL--PG--FGF 155 (582)
T ss_dssp EECTT-------S--CSBEEEEEEEC-------SSCEEEEEECSSCEEEEEEETTE--------EEEEEEE--SS--CEE
T ss_pred ccccC-------C--CCceeeeeCCC-------CCeEEEEecCCCCceEEEccCCc--------EEEeecC--CC--ceE
Confidence 22221 1 11222333221 22345555556666799876432 2222221 11 788
Q ss_pred EEcCCCCEEEEecCC----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC--eEEEE
Q 020454 169 KVDISEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QVRLY 242 (326)
Q Consensus 169 ~~~~~~~~l~sg~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg--~v~iw 242 (326)
+|+|+|++|++++.+ ..|++||+.+++.. .+..+ ...+..++|+| +|+.|+++..++ .|++|
T Consensus 156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~---------~~~~~~~~~Sp--DG~~l~~~~~~~~~~i~~~ 223 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSG---------EGSFSSASISP--GMKVTAGLETAREARLVTV 223 (582)
T ss_dssp EEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCS---------SCEEEEEEECT--TSCEEEEEECSSCEEEEEE
T ss_pred EECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecC---------CCccccceECC--CCCEEEEccCCCeeEEEEE
Confidence 999999999988777 78999999887654 33332 24578999998 677899888888 99999
Q ss_pred eCCCCCCceeEEeecCCceEEEE--------ecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC
Q 020454 243 DTSAQRRPVMSFDFRETPIKAVA--------EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (326)
Q Consensus 243 d~~~~~~~~~~~~~~~~~i~~v~--------~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 314 (326)
|+.++ +.. .+..+...+..++ |+|||..+++++.+|.+++|++ ++.+. .+ .+.|.+++|+ +++
T Consensus 224 d~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~-~~~v~~~~~s-dg~ 294 (582)
T 3o4h_A 224 DPRDG-SVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---AP-QGNHGRVVLW-RGK 294 (582)
T ss_dssp CTTTC-CEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CC-SSEEEEEEEE-TTE
T ss_pred cCCCC-cEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cC-CCceEEEEec-CCE
Confidence 99876 434 5556666666667 9999988889999999999999 76654 33 5689999999 999
Q ss_pred EEEEeccCcc
Q 020454 315 IIASCGFLEA 324 (326)
Q Consensus 315 ~l~s~s~D~~ 324 (326)
++++++.|..
T Consensus 295 ~l~~~s~~~~ 304 (582)
T 3o4h_A 295 LVTSHTSLST 304 (582)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEcCCCC
Confidence 9999887754
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=1.1e-16 Score=133.94 Aligned_cols=250 Identities=9% Similarity=0.056 Sum_probs=160.1
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCC-CceEEEEEeeeCCCCCeE-EEEecCCcEEEEeccccceeeeec
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS-SNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAIS 92 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~~~~~~~~~~ 92 (326)
..++++..++.|++||..++ ++...+..+.. ... .+.+ +++++++ +++..++.|.+||+.+++.+..+.
T Consensus 12 ~~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~~--~~~~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 12 EYMIVTNYPNNLHVVDVASD-----TVYKSCVMPDKFGPG--TAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp EEEEEEETTTEEEEEETTTT-----EEEEEEECSSCCSSC--EEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEEEeCCCCeEEEEECCCC-----cEEEEEecCCCCCCc--eeEE--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 56788889999999999876 44444433220 111 2333 3445544 455678999999998888766655
Q ss_pred ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC------------CcEEEEEccccccccccccceEEEEEcc
Q 020454 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK------------GKASMRSIEVTKVSAESSCSTVKSWNVC 160 (326)
Q Consensus 93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~------------g~v~i~~~~~~~~~~~~~~~~~~~~~~~ 160 (326)
....+ ......+.++.+.+ ++..++++..+ +.|.+||+..... ...+..+..
T Consensus 83 ~~~~~--~~~~~~~~~~~~sp--------dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~~~~~~~~~- 146 (349)
T 1jmx_B 83 LSSVP--GEVGRSMYSFAISP--------DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-----AKPVRTFPM- 146 (349)
T ss_dssp SCCST--TEEEECSSCEEECT--------TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-----BCCSEEEEC-
T ss_pred ccccc--ccccccccceEECC--------CCCEEEEEcccccccccccccCCCeEEEEECCCccc-----cceeeeccC-
Confidence 31000 00012245566544 55677777755 8999999875321 112333332
Q ss_pred CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC--------c---C------------------
Q 020454 161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG--------I---F------------------ 211 (326)
Q Consensus 161 ~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--------~---~------------------ 211 (326)
...+.+++++|+++ +++++. .|.+||+.+++.+..+......... + .
T Consensus 147 -~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 147 -PRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp -CSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred -CCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence 34688899999999 555544 3999999988776655432100000 0 0
Q ss_pred ------------------------------CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCce
Q 020454 212 ------------------------------TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (326)
Q Consensus 212 ------------------------------~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i 261 (326)
....+.+++|+|. ++++++++ ++.|.+||+.++ +.+..+... ..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~-~~~ 297 (349)
T 1jmx_B 223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK-DPNQIYGV--LNRLAKYDLKQR-KLIKAANLD-HTY 297 (349)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSS-CTTEEEEE--ESEEEEEETTTT-EEEEEEECS-SCC
T ss_pred cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCC-CCCEEEEE--cCeEEEEECccC-eEEEEEcCC-CCc
Confidence 0012334555552 45577777 889999999976 445555543 457
Q ss_pred EEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (326)
Q Consensus 262 ~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 298 (326)
..++|+|++++|++++.++.|++||+++++.+..++.
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred cceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 7899999999999989999999999999999888764
No 155
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=2.2e-18 Score=158.54 Aligned_cols=232 Identities=8% Similarity=-0.053 Sum_probs=153.8
Q ss_pred eCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC--------
Q 020454 61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-------- 132 (326)
Q Consensus 61 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~-------- 132 (326)
++++++++++ +.||+|++||+.+++....+.... .....+..+.+.+ ++..|++++.+
T Consensus 24 ~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~-----~~~~~v~~~~~Sp--------Dg~~l~~~~~~~~~~~~~~ 89 (723)
T 1xfd_A 24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKK-----IESLRAIRYEISP--------DREYALFSYNVEPIYQHSY 89 (723)
T ss_dssp BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTT-----TTTTTCSEEEECT--------TSSEEEEEESCCCCSSSCC
T ss_pred EcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccc-----ccccccceEEECC--------CCCEEEEEecCccceeecc
Confidence 4455556665 789999999999888755544210 0011366677655 56678888764
Q ss_pred -CcEEEEEccccccccccccceEEEEEc--cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454 133 -GKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG 209 (326)
Q Consensus 133 -g~v~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 209 (326)
+.+.+|++..... +.... .+...+..++|+|+|+.||.++. +.|++||+.+++.......+......
T Consensus 90 ~~~i~~~d~~~~~~---------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 90 TGYYVLSKIPHGDP---------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIY 159 (723)
T ss_dssp CSEEEEEESSSCCC---------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred eeeEEEEECCCCce---------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceE
Confidence 6778998765331 11111 11223778999999999998876 79999999987765544332211100
Q ss_pred cCCC---------CceeeeEEeecCCCcEEEEEeCCC----------------------------------eEEEEeCCC
Q 020454 210 IFTP---------TWFTSAAFLSIDDHRKFVAGTNDH----------------------------------QVRLYDTSA 246 (326)
Q Consensus 210 ~~~~---------~~v~~~~~~p~~~~~~l~~~~~dg----------------------------------~v~iwd~~~ 246 (326)
...+ ..+.+++|+| +++.|++++.++ .|++||+.+
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~ 237 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG 237 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred CcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence 0001 1236899998 677888877543 899999987
Q ss_pred CCCceeEEeec------CCceEEEEecCCCCeEEEEcC----CCcEEEEECCCCeEEEEEcceecceEE----EEEECCC
Q 020454 247 QRRPVMSFDFR------ETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGKLLGCFIGKCSGSIR----SIARHPT 312 (326)
Q Consensus 247 ~~~~~~~~~~~------~~~i~~v~~s~~~~~l~~g~~----dg~v~iwd~~~~~~~~~~~~~~~~~v~----~l~~~p~ 312 (326)
+ +....+..+ ...+..++|+|||++|++... +..|++||+.+++....+..++.+.+. .++|+|+
T Consensus 238 ~-~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spd 316 (723)
T 1xfd_A 238 P-THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD 316 (723)
T ss_dssp S-CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred C-ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCC
Confidence 6 333445433 567899999999998876543 357999999999877666543244443 8899999
Q ss_pred CCEEEEe
Q 020454 313 LPIIASC 319 (326)
Q Consensus 313 ~~~l~s~ 319 (326)
++.|+..
T Consensus 317 g~~l~~~ 323 (723)
T 1xfd_A 317 GRKFFFI 323 (723)
T ss_dssp SCSEEEE
T ss_pred CCeEEEE
Confidence 9977754
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=6.5e-16 Score=130.50 Aligned_cols=273 Identities=14% Similarity=0.040 Sum_probs=164.0
Q ss_pred eeeeeecCc--ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc-ccceeeee
Q 020454 15 LRALTFDSL--GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVAI 91 (326)
Q Consensus 15 ~~l~~~~~~--G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~-~~~~~~~~ 91 (326)
.++++|+.. +.|.+|++... .+..+........ .......+.+ ++++++|++++.+ .|.+|++. ++++....
T Consensus 3 ~~~~vg~~~~~~~i~~~~~d~~-~g~l~~~~~~~~~-~~~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~ 77 (365)
T 1jof_A 3 HHLMIGTWTPPGAIFTVQFDDE-KLTCKLIKRTEIP-QDEPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEA 77 (365)
T ss_dssp EEEEEEESSSSCEEEEEEEETT-TTEEEEEEEEECC-TTCCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEE
T ss_pred EEEEEEEccCCCcEEEEEEECC-CCCEEEeeEEccC-CCCCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEee
Confidence 456677654 56888887543 3333222221101 1111222333 4556678888887 99999997 67654332
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccCCCCce--EEEEe-------------cCCcEEEEEccccccccccccceEEE
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT--LLTCT-------------TKGKASMRSIEVTKVSAESSCSTVKS 156 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~--l~~~~-------------~~g~v~i~~~~~~~~~~~~~~~~~~~ 156 (326)
.. ...+.+.++.+.+ ++.. ++++. .+|.+.+|+++.... ....+..
T Consensus 78 ~~-------~~~g~~~~~~~sp--------dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~----~~~~~~~ 138 (365)
T 1jof_A 78 SH-------PIGGHPRANDADT--------NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK----LEKNVQN 138 (365)
T ss_dssp EE-------ECCSSGGGGCTTS--------CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC----EEEEEEE
T ss_pred Ee-------ecCCCCccEEECC--------CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc----CcceEee
Confidence 21 0012233455433 3443 33442 688999999864221 1112333
Q ss_pred EEccCCCceEEEEEcCCCCEEEEec-CCCeEEEEECC-Cceeee--eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEE
Q 020454 157 WNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLD-KCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (326)
Q Consensus 157 ~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~-~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~ 232 (326)
+.......+..++|+|++++|+++. .++.|.+||+. +++... ...... +...+..++|+| +++++++
T Consensus 139 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-------~g~~p~~~~~sp--dg~~l~v 209 (365)
T 1jof_A 139 YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-------PGDHPRWVAMHP--TGNYLYA 209 (365)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-------TTCCEEEEEECT--TSSEEEE
T ss_pred EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-------CCCCCCEeEECC--CCCEEEE
Confidence 3323456799999999999887765 36799999998 665422 221100 113477899998 5667776
Q ss_pred Ee-CCCeEEEEeCC--CCCCce---eEEee-------cCC------ceEEEE-ecCCCCeEEEEcCCC------cEEEEE
Q 020454 233 GT-NDHQVRLYDTS--AQRRPV---MSFDF-------RET------PIKAVA-EEPDSFNIYIGNGSG------DLASVD 286 (326)
Q Consensus 233 ~~-~dg~v~iwd~~--~~~~~~---~~~~~-------~~~------~i~~v~-~s~~~~~l~~g~~dg------~v~iwd 286 (326)
++ .++.|.+|++. ++ +.. ..+.. +.. .+..++ |+|||++|++++.+. .|.+|+
T Consensus 210 ~~~~~~~v~v~~~~~~~g-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~ 288 (365)
T 1jof_A 210 LMEAGNRICEYVIDPATH-MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFK 288 (365)
T ss_dssp EETTTTEEEEEEECTTTC-CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEE
T ss_pred EECCCCeEEEEEEeCCCC-cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEE
Confidence 65 47899999865 33 221 12221 111 478999 999999998766432 899999
Q ss_pred CC-CCeEEE---EEcceecceEEEEEECC---CCCEEEEeccC
Q 020454 287 IR-TGKLLG---CFIGKCSGSIRSIARHP---TLPIIASCGFL 322 (326)
Q Consensus 287 ~~-~~~~~~---~~~~~~~~~v~~l~~~p---~~~~l~s~s~D 322 (326)
+. ++++.. ....+ ...+..++|+| ++++|++++.|
T Consensus 289 ~~~~g~~~~~~~~~~~~-~~~~~~~a~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 289 LRDCGSIEKQLFLSPTP-TSGGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp ECTTSCEEEEEEEEECS-SCCTTCCCEEECTTCTTEEEEECSS
T ss_pred ECCCCCEEEeeeeeecC-CCCcccceecCCCcCCCEEEEEEcC
Confidence 96 666543 23333 44677899999 89999998865
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=1.6e-17 Score=149.16 Aligned_cols=224 Identities=12% Similarity=-0.025 Sum_probs=152.8
Q ss_pred EEEEEeeeCCCCCeEEEEec-CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec-
Q 020454 54 VLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT- 131 (326)
Q Consensus 54 ~~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~- 131 (326)
+..+.+. .++++|+.++. ||+++||++..++.. .+.. .+...+....+.+ + ..++++..
T Consensus 24 ~~~~~~~--~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~-------~~~~~~~~~~~sp--------d-~~l~~~~~~ 84 (582)
T 3o4h_A 24 KYSLQGV--VDGDKLLVVGFSEGSVNAYLYDGGETV-KLNR-------EPINSVLDPHYGV--------G-RVILVRDVS 84 (582)
T ss_dssp EEEEEEE--ETTTEEEEEEEETTEEEEEEEETTEEE-ECCS-------SCCSEECEECTTC--------S-EEEEEEECS
T ss_pred hheeecC--CCCCeEEEEEccCCceeEEEEcCCCcE-eeec-------ccccccccccCCC--------C-eEEEEeccC
Confidence 3344443 34557888877 999999998665543 3221 2224566666543 3 44555543
Q ss_pred --CCcEEEEEccc--cccccccccceEEEEEccCCCceEEEEEcCCCC--EEEEecCCCeEEEEECCCceeeeeecCCCC
Q 020454 132 --KGKASMRSIEV--TKVSAESSCSTVKSWNVCASGTIAFSKVDISEK--FSLFGGKGVEVNVWDLDKCEKIWTAKPPPK 205 (326)
Q Consensus 132 --~g~v~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~ 205 (326)
+....+|.++. .. ... .+.........+++|+++ +++++..+ .+.+||+.+++........
T Consensus 85 ~g~~~~~l~~~~~~~~g--------~~~--~l~~~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~-- 151 (582)
T 3o4h_A 85 KGAEQHALFKVNTSRPG--------EEQ--RLEAVKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLP-- 151 (582)
T ss_dssp TTSCCEEEEEEETTSTT--------CCE--ECTTSCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEES--
T ss_pred CCCcceEEEEEeccCCC--------ccc--cccCCCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCC--
Confidence 45567776654 22 111 122233444567777764 45555444 5559999888764443221
Q ss_pred CCCCcCCCCceeeeEEeecCCCcEEEEEeCC----CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC-
Q 020454 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG- 280 (326)
Q Consensus 206 ~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg- 280 (326)
. .+++|+| +|++|++++.+ +.|++||+.++ + ...+..+...+..++|+|||++|+++..++
T Consensus 152 --------~--~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g-~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 217 (582)
T 3o4h_A 152 --------G--FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSG-G-LRVFDSGEGSFSSASISPGMKVTAGLETARE 217 (582)
T ss_dssp --------S--CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTC-C-CEEECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred --------C--ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCC-C-ceEeecCCCccccceECCCCCEEEEccCCCe
Confidence 1 4778998 67789988776 78999999876 3 456777888899999999999999888888
Q ss_pred -cEEEEECCCCeEEEEEcceecceEEEEE--------ECCCCCEEEEeccCccC
Q 020454 281 -DLASVDIRTGKLLGCFIGKCSGSIRSIA--------RHPTLPIIASCGFLEAA 325 (326)
Q Consensus 281 -~v~iwd~~~~~~~~~~~~~~~~~v~~l~--------~~p~~~~l~s~s~D~~~ 325 (326)
.|++||+.+++.. .+.+| ...+..++ |+|++.++++++.|+.+
T Consensus 218 ~~i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~ 269 (582)
T 3o4h_A 218 ARLVTVDPRDGSVE-DLELP-SKDFSSYRPTAITWLGYLPDGRLAVVARREGRS 269 (582)
T ss_dssp EEEEEECTTTCCEE-ECCCS-CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred eEEEEEcCCCCcEE-EccCC-CcChhhhhhccccceeEcCCCcEEEEEEcCCcE
Confidence 8999999998887 66766 77777777 99999999999988754
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.77 E-value=2.7e-16 Score=130.91 Aligned_cols=233 Identities=13% Similarity=0.066 Sum_probs=153.2
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCC---CceEEEEEeeeCCCCCeEEEEe------------cCCcEEEE
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS---SNCVLAASIDDSQNDPLLAVAR------------KNGLTDIL 80 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~g~------------~dg~i~i~ 80 (326)
-++++..++.|.+||+.++ +....+..... ......+. .++++++|+++. .++.|.+|
T Consensus 48 l~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~ 120 (337)
T 1pby_B 48 AYATVNKSESLVKIDLVTG-----ETLGRIDLSTPEERVKSLFGAA--LSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp EEEEETTTTEEEEEETTTC-----CEEEEEECCBTTEEEECTTCEE--ECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred EEEEeCCCCeEEEEECCCC-----CeEeeEEcCCcccccccccceE--ECCCCCEEEEEecccccccccccccCceEEEE
Confidence 3566777899999999876 33333322110 00111222 345566788876 57999999
Q ss_pred eccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc
Q 020454 81 NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC 160 (326)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~ 160 (326)
|+.+++.+..+.. ...+.++.+.+ ++..++++ ++.+.+|++.... .+..+...
T Consensus 121 d~~~~~~~~~~~~---------~~~~~~~~~s~--------dg~~l~~~--~~~i~~~d~~~~~--------~~~~~~~~ 173 (337)
T 1pby_B 121 DAETLSRRKAFEA---------PRQITMLAWAR--------DGSKLYGL--GRDLHVMDPEAGT--------LVEDKPIQ 173 (337)
T ss_dssp ETTTTEEEEEEEC---------CSSCCCEEECT--------TSSCEEEE--SSSEEEEETTTTE--------EEEEECST
T ss_pred ECCCCcEEEEEeC---------CCCcceeEECC--------CCCEEEEe--CCeEEEEECCCCc--------Eeeeeecc
Confidence 9988877665542 12345566543 45566666 7899999976533 23333322
Q ss_pred C-CCceEEEEEcCCCCEEEEecCC-C-----------------------eEEEEECCCceeeeeecCCCCCCCCcCCCCc
Q 020454 161 A-SGTIAFSKVDISEKFSLFGGKG-V-----------------------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW 215 (326)
Q Consensus 161 ~-~~~v~~~~~~~~~~~l~sg~~d-~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (326)
. .. .+.++|+++.++..+.+ + .|.+||+.+++.. ...... ....
T Consensus 174 ~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~-------~~~~ 242 (337)
T 1pby_B 174 SWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI-------MDVF 242 (337)
T ss_dssp TTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE-------CSSC
T ss_pred ccCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCC-------CCCc
Confidence 2 12 22678888766544432 2 4689999887764 221110 1134
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC 295 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~ 295 (326)
+.+++|+| ++++++++ ++.|++||+.+. +.+..+..+ ..+.+++|+|+|++|++++.++.|++||+.+++.+..
T Consensus 243 ~~~~~~s~--dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~ 316 (337)
T 1pby_B 243 YFSTAVNP--AKTRAFGA--YNVLESFDLEKN-ASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp EEEEEECT--TSSEEEEE--ESEEEEEETTTT-EEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred eeeEEECC--CCCEEEEe--CCeEEEEECCCC-cCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEE
Confidence 67889998 56677777 799999999876 445555544 5678899999999999999999999999999999988
Q ss_pred Ecce
Q 020454 296 FIGK 299 (326)
Q Consensus 296 ~~~~ 299 (326)
++.+
T Consensus 317 ~~~~ 320 (337)
T 1pby_B 317 VDLP 320 (337)
T ss_dssp EECG
T ss_pred EEcC
Confidence 8754
No 159
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.71 E-value=3.1e-15 Score=142.89 Aligned_cols=214 Identities=14% Similarity=0.112 Sum_probs=153.8
Q ss_pred CeEEEEecCCcEEEEeccc-cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 66 PLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 66 ~~l~~g~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
.+++++..||.++||.+.. +.....+.. + ..+....+.+ ++..++.+ .++.|++|++....
T Consensus 215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l~~--------~-~~~~~~~~Sp--------DG~~la~~-~~~~i~~~d~~~~~ 276 (1045)
T 1k32_A 215 RIYFITDIDGFGQIYSTDLDGKDLRKHTS--------F-TDYYPRHLNT--------DGRRILFS-KGGSIYIFNPDTEK 276 (1045)
T ss_dssp EEEEEECTTSSCEEEEEETTSCSCEECCC--------C-CSSCEEEEEE--------SSSCEEEE-ETTEEEEECTTTCC
T ss_pred EEEEEEeccCceEEEEEeCCCCcceEecC--------C-CCcceeeEcC--------CCCEEEEE-eCCEEEEecCCceE
Confidence 4677788889999998753 322233221 1 1233344333 44556555 68999999873211
Q ss_pred cccccccceEEEEEc----------cCCCceEEEEEc-CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCC
Q 020454 145 VSAESSCSTVKSWNV----------CASGTIAFSKVD-ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~----------~~~~~v~~~~~~-~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 213 (326)
+..+.. .+...+..++|+ |++++|++++ ++.|.+|++..++... +..+ .
T Consensus 277 ---------l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~---------~ 336 (1045)
T 1k32_A 277 ---------IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEP---------L 336 (1045)
T ss_dssp ---------EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCC---------S
T ss_pred ---------eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCC---------C
Confidence 111110 112368899999 9999888877 7899999998766433 2222 1
Q ss_pred C-ceeeeEEeecCCCcEEEEEeCCCeEE-EEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454 214 T-WFTSAAFLSIDDHRKFVAGTNDHQVR-LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (326)
Q Consensus 214 ~-~v~~~~~~p~~~~~~l~~~~~dg~v~-iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~ 291 (326)
. .+..++|+ +++.|+.++.++.+. +||+... . ...+..+...+..++|+|+|++|++++.++.|++||+.+++
T Consensus 337 ~~~~~~~~~s---dg~~l~~~s~~~~l~~~~d~~~~-~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~ 411 (1045)
T 1k32_A 337 RIRYVRRGGD---TKVAFIHGTREGDFLGIYDYRTG-K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 411 (1045)
T ss_dssp CEEEEEECSS---SEEEEEEEETTEEEEEEEETTTC-C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cceEEeeeEc---CCCeEEEEECCCceEEEEECCCC-C-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc
Confidence 3 57788887 456888888888888 9998865 3 34455677889999999999999999999999999999999
Q ss_pred EEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454 292 LLGCFIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 292 ~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
....+.+| .+.+.+++|+|++++|++++.++
T Consensus 412 ~~~~~~~~-~~~v~~~~~SpDG~~la~~~~~~ 442 (1045)
T 1k32_A 412 PTVIERSR-EAMITDFTISDNSRFIAYGFPLK 442 (1045)
T ss_dssp EEEEEECS-SSCCCCEEECTTSCEEEEEEEEC
T ss_pred eEEeccCC-CCCccceEECCCCCeEEEEecCc
Confidence 88877777 88999999999999999887754
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.71 E-value=4.3e-16 Score=143.30 Aligned_cols=273 Identities=10% Similarity=-0.051 Sum_probs=160.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCC-CceEEEEEeeeCCCCCeEEEEec---------CCcEEEEeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS-SNCVLAASIDDSQNDPLLAVARK---------NGLTDILNPLN 84 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~---------dg~i~i~~~~~ 84 (326)
-+++..+.+|.|++|++.++ +.......+.. ...+..+ .+++++++|++++. ++.|++||+.+
T Consensus 27 g~~~~~~~d~~i~~~~~~~g-----~~~~~~~~~~~~~~~~~~~--~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 27 QEYLHQSADNNIVLYNIETG-----QSYTILSNRTMKSVNASNY--GLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp SEEEEECTTSCEEEEESSSC-----CEEEEECHHHHHTTTCSEE--EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred CeEEEEcCCCCEEEEEcCCC-----cEEEEEccccccccceeeE--EECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 46777778999999999877 22222221111 0012223 34567778888876 79999999988
Q ss_pred cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccce-EEEEEccCC-
Q 020454 85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST-VKSWNVCAS- 162 (326)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~-~~~~~~~~~- 162 (326)
++.+..... ...+..+.+.+ ++..|+.+ .++.|++|++..........++. ..+++- ..
T Consensus 100 g~~~~~~~l---------~~~~~~~~~SP--------DG~~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g-~~~ 160 (719)
T 1z68_A 100 GEFVRGNEL---------PRPIQYLCWSP--------VGSKLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNG-IPD 160 (719)
T ss_dssp TEECCSSCC---------CSSBCCEEECS--------STTCEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEES-SCC
T ss_pred Cccccceec---------CcccccceECC--------CCCEEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcc-ccc
Confidence 876321111 03455566544 45566665 58899999976543211000110 001110 00
Q ss_pred --------CceEEEEEcCCCCEEEEecCCC----------------------------------eEEEEECCCceee--e
Q 020454 163 --------GTIAFSKVDISEKFSLFGGKGV----------------------------------EVNVWDLDKCEKI--W 198 (326)
Q Consensus 163 --------~~v~~~~~~~~~~~l~sg~~d~----------------------------------~i~iwd~~~~~~~--~ 198 (326)
.....++|+|+|++|++++.|. .|++||+.+++.. .
T Consensus 161 ~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~ 240 (719)
T 1z68_A 161 WVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQ 240 (719)
T ss_dssp HHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCE
T ss_pred ceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcccee
Confidence 1124899999999999887652 7889999887643 1
Q ss_pred eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC----CeEEEEe----CCCCCCceeEE----eecCCceE----
Q 020454 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYD----TSAQRRPVMSF----DFRETPIK---- 262 (326)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d----g~v~iwd----~~~~~~~~~~~----~~~~~~i~---- 262 (326)
.+.... . ...+...+..++|+|+ ++++++.... ..|.+|| +.++ +....+ ..+...+.
T Consensus 241 ~~~~~~--~-~~~~~~~~~~~~~SpD--~~~~~~~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 314 (719)
T 1z68_A 241 EVPVPA--M-IASSDYYFSWLTWVTD--ERVCLQWLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFFV 314 (719)
T ss_dssp ECCCCH--H-HHTSCEEEEEEEESSS--SEEEEEEEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSSC
T ss_pred EccCCc--c-CCCCcceEEEeEEeCC--CeEEEEEeccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccccC
Confidence 111000 0 0013356889999994 5566664322 3588899 7655 222222 34555665
Q ss_pred -EEEecCCCCeEEE--EcCCC--cEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454 263 -AVAEEPDSFNIYI--GNGSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 263 -~v~~s~~~~~l~~--g~~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
.++|+|||+.|+. +..+| .|.+||+.+++ ...+..+ ...+..+.+. +++.|+..+.+
T Consensus 315 ~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~-~~~v~~~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 315 STPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG-KWEAINIFRV-TQDSLFYSSNE 376 (719)
T ss_dssp CCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS-SSCEEEEEEE-CSSEEEEEESC
T ss_pred CccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC-ceEEEEEEEE-eCCEEEEEEec
Confidence 7899999996653 54555 47777877766 3445554 5567777777 77666655544
No 161
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.70 E-value=6.9e-15 Score=123.86 Aligned_cols=265 Identities=10% Similarity=0.062 Sum_probs=157.0
Q ss_pred CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe----------cCCcEEEEeccccceeeee
Q 020454 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAI 91 (326)
Q Consensus 22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----------~dg~i~i~~~~~~~~~~~~ 91 (326)
.++.|.+||..++ ++......... . ....++++++++++. .++.|.+||..+.+.+..+
T Consensus 29 ~d~~v~v~D~~t~-----~~~~~i~~g~~-----p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i 97 (361)
T 2oiz_A 29 TESRVHVYDYTNG-----KFLGMVPTAFN-----G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI 97 (361)
T ss_dssp GGCEEEEEETTTC-----CEEEEEECCEE-----E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE
T ss_pred ccCeEEEEECCCC-----eEEEEecCCCC-----C-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEE
Confidence 3679999998776 44444432211 1 334456677888886 3678999999888877776
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec--CCcEEEEEccccccccc---------------------
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAE--------------------- 148 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~--~g~v~i~~~~~~~~~~~--------------------- 148 (326)
...... ..+.....++.+.+ ++.+++++.. ++.|.+||+........
T Consensus 98 ~~~~~~--~~~g~~p~~i~~sp--------dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 98 SLPPKR--VQGLNYDGLFRQTT--------DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFM 167 (361)
T ss_dssp EECTTB--CCBCCCGGGEEECT--------TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEE
T ss_pred EcCccc--cccCCCcceEEECC--------CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEE
Confidence 542100 00112344566544 5567777764 58899999875432111
Q ss_pred --cccceEEEEEccCCCceEEE----------------EEcCCCCEEEEecCCCeEEEEECCCceee--eeecCCCCCCC
Q 020454 149 --SSCSTVKSWNVCASGTIAFS----------------KVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSL 208 (326)
Q Consensus 149 --~~~~~~~~~~~~~~~~v~~~----------------~~~~~~~~l~sg~~d~~i~iwd~~~~~~~--~~~~~~~~~~~ 208 (326)
..++.+..+.....+.+... .+.+++..++..+.++.+.++|+...... ...........
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence 11222333333221222100 11123334444556677777777543211 11100000000
Q ss_pred Cc-CCCCceeeeEEeecCCCcEEEEEeC-----------CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEE
Q 020454 209 GI-FTPTWFTSAAFLSIDDHRKFVAGTN-----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG 276 (326)
Q Consensus 209 ~~-~~~~~v~~~~~~p~~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g 276 (326)
.. ..+.....++|+| +++.+++... .+.|.+||+.+. +.+.++..+. ...++|+|+|++|+++
T Consensus 248 ~~~~~p~g~~~~a~~~--dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~--p~~ia~spdg~~l~v~ 322 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHR--ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD--ALSMTIDQQRNLMLTL 322 (361)
T ss_dssp HTTCEECCSSCEEEET--TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT--CCEEEEETTTTEEEEE
T ss_pred ccccccCCeeEEEEec--CCCeEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC--eeEEEECCCCCEEEEe
Confidence 00 0011112367887 3345555432 358999999987 6678887776 8999999999999988
Q ss_pred cCCCcEEEEECCCC--eEEEEEcceecceEEEEEECCCCC
Q 020454 277 NGSGDLASVDIRTG--KLLGCFIGKCSGSIRSIARHPTLP 314 (326)
Q Consensus 277 ~~dg~v~iwd~~~~--~~~~~~~~~~~~~v~~l~~~p~~~ 314 (326)
+. +.|.+||..++ +.+.++... ....+.++++|+|.
T Consensus 323 n~-~~v~v~D~~t~~l~~~~~i~~~-G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 323 DG-GNVNVYDISQPEPKLLRTIEGA-AEASLQVQFHPVGG 360 (361)
T ss_dssp CS-SCEEEEECSSSSCEEEEEETTS-CSSEEEEEECCCSC
T ss_pred CC-CeEEEEECCCCcceeeEEeccC-CCCcEEEEecCCCC
Confidence 87 99999999999 999988654 66778899999985
No 162
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.70 E-value=1.2e-13 Score=112.39 Aligned_cols=229 Identities=9% Similarity=0.088 Sum_probs=152.0
Q ss_pred CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec--CCcEEEEEc
Q 020454 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSI 140 (326)
Q Consensus 63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~--~g~v~i~~~ 140 (326)
+++.++++...++.|.+||.. ++.+..+...... ..+...+.++++.. .++.++++.. ++.|.+|+.
T Consensus 39 ~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~--~~~~~~p~~i~~~~--------~~g~l~v~~~~~~~~i~~~d~ 107 (286)
T 1q7f_A 39 AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR--DSQLLYPNRVAVVR--------NSGDIIVTERSPTHQIQIYNQ 107 (286)
T ss_dssp TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS--TTCBSSEEEEEEET--------TTTEEEEEECGGGCEEEEECT
T ss_pred CCCCEEEEECCCCEEEEECCC-CcEEEEecccCCC--cccccCceEEEEEc--------CCCeEEEEcCCCCCEEEEECC
Confidence 445577777889999999985 5555544321100 11223456666522 2345555543 788998883
Q ss_pred cccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeE
Q 020454 141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (326)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (326)
+. ..+..+.......+..++++++++++++...++.|.+||.. ++.+..+.... ....+.+++
T Consensus 108 ~g---------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~-------~~~~p~~i~ 170 (286)
T 1q7f_A 108 YG---------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK-------HLEFPNGVV 170 (286)
T ss_dssp TS---------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT-------TCSSEEEEE
T ss_pred CC---------cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCC-------ccCCcEEEE
Confidence 21 12333433334568999999999988888888999999965 44443332110 113477899
Q ss_pred EeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec--CCceEEEEecCCCCeEEEEcCCC-cEEEEECCCCeEEEEEc
Q 020454 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSG-DLASVDIRTGKLLGCFI 297 (326)
Q Consensus 221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~~i~~v~~s~~~~~l~~g~~dg-~v~iwd~~~~~~~~~~~ 297 (326)
+.| +++++++...++.|++||... ..+..+... ...+..++++++|+++++...++ .|.+||. +++.+..+.
T Consensus 171 ~~~--~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~ 245 (286)
T 1q7f_A 171 VND--KQEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE 245 (286)
T ss_dssp ECS--SSEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE
T ss_pred ECC--CCCEEEEECCCCEEEEEcCCC--CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEc
Confidence 987 566777778899999999853 345555433 25688999999998888887776 9999995 566777666
Q ss_pred cee-cceEEEEEECCCCCEEEEeccCccC
Q 020454 298 GKC-SGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 298 ~~~-~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.+. ...+.+++++|+++++++ +.|+.+
T Consensus 246 ~~~~~~~~~~i~~~~~g~l~vs-~~~~~v 273 (286)
T 1q7f_A 246 SKVKHAQCFDVALMDDGSVVLA-SKDYRL 273 (286)
T ss_dssp ESSCCSCEEEEEEETTTEEEEE-ETTTEE
T ss_pred ccCCCCcceeEEECCCCcEEEE-CCCCeE
Confidence 431 224779999999987777 457654
No 163
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=3.1e-14 Score=118.39 Aligned_cols=225 Identities=8% Similarity=-0.030 Sum_probs=151.1
Q ss_pred CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceE
Q 020454 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV 154 (326)
Q Consensus 75 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~ 154 (326)
++|.+||..+++++..+.. ..-..+.++++.+ ++..+++...++.|++|+.+.... .+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~-------~~~~~p~gia~d~--------~g~l~v~d~~~~~v~~~~~~g~~~-------~~ 126 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGK-------NLFYLPHGLSIDT--------DGNYWVTDVALHQVFKLDPHSKEG-------PL 126 (329)
T ss_dssp CCEEEECTTTCCEEEEECT-------TTCSSEEEEEECT--------TSCEEEEETTTTEEEEECTTCSSC-------CS
T ss_pred CcEEEEECCCCeEEeccCC-------CccCCceEEEECC--------CCCEEEEECCCCEEEEEeCCCCeE-------EE
Confidence 4799999988887655432 2224566777644 455677777789999998653310 11
Q ss_pred EEEE--------ccCCCceEEEEEcC-CCCEEEEec-CCCeEEEEECCCceeeeeecCCCCCC-CCcCCCCceeeeEEee
Q 020454 155 KSWN--------VCASGTIAFSKVDI-SEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNS-LGIFTPTWFTSAAFLS 223 (326)
Q Consensus 155 ~~~~--------~~~~~~v~~~~~~~-~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p 223 (326)
..+. .........++++| +++++++.+ .++.|++|| .+++.+..+....... ..........++++.|
T Consensus 127 ~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~ 205 (329)
T 3fvz_A 127 LILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP 205 (329)
T ss_dssp EEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEET
T ss_pred EEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC
Confidence 1111 11223588999999 788888876 689999999 4555555443211110 0000113477899987
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe--ecCCceEEEEecC------CCCeEEEEcCCCcEEEEECCCCeEEEE
Q 020454 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEP------DSFNIYIGNGSGDLASVDIRTGKLLGC 295 (326)
Q Consensus 224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~~i~~v~~s~------~~~~l~~g~~dg~v~iwd~~~~~~~~~ 295 (326)
. .++++++...++.|++||..++ +.+..+. .+...+..++|+| +|+..++...+..|++||+.+++.+..
T Consensus 206 ~-~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~ 283 (329)
T 3fvz_A 206 H-LDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV 283 (329)
T ss_dssp T-TTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred C-CCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence 4 3668888888999999999866 5566653 2445788899999 344333344556899999999999988
Q ss_pred Ec---ceecceEEEEEECCCCCEEEEeccCccC
Q 020454 296 FI---GKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 296 ~~---~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+. ++ ......|+++|++.++++...++.+
T Consensus 284 ~~~~~~~-~~~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 284 FKPVRKH-FDMPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp ECCSSSC-CSSEEEEEECTTSEEEEEESSSCCE
T ss_pred EcCCCCc-cCCeeEEEECCCCCEEEEECCCCEE
Confidence 84 55 6678999999999888887777654
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=147.20 Aligned_cols=233 Identities=7% Similarity=-0.088 Sum_probs=148.2
Q ss_pred CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec---------C
Q 020454 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---------K 132 (326)
Q Consensus 62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~---------~ 132 (326)
.+.+. ++..+.||+|++||+.+++....+.... .....+..+.+.+ ++..|+.++. +
T Consensus 24 s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~Sp--------Dg~~la~~~~~~~~~~~s~~ 89 (719)
T 1z68_A 24 ISGQE-YLHQSADNNIVLYNIETGQSYTILSNRT-----MKSVNASNYGLSP--------DRQFVYLESDYSKLWRYSYT 89 (719)
T ss_dssp SSSSE-EEEECTTSCEEEEESSSCCEEEEECHHH-----HHTTTCSEEEECT--------TSSEEEEEEEEEECSSSCEE
T ss_pred CCCCe-EEEEcCCCCEEEEEcCCCcEEEEEcccc-----ccccceeeEEECC--------CCCeEEEEecCceeEEeecc
Confidence 34444 4445579999999998888655443210 0001255666644 5667777766 6
Q ss_pred CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (326)
Q Consensus 133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (326)
+.+++|++....... ...+ ...+..++|+|+|+.|+.+. ++.|++||+.+++..............-.+
T Consensus 90 ~~i~~~d~~~g~~~~---~~~l-------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~ 158 (719)
T 1z68_A 90 ATYYIYDLSNGEFVR---GNEL-------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGI 158 (719)
T ss_dssp EEEEEEETTTTEECC---SSCC-------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESS
T ss_pred eEEEEEECCCCcccc---ceec-------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccc
Confidence 899999976543200 0011 24578899999999999875 789999999887664332221111000011
Q ss_pred CCce---------eeeEEeecCCCcEEEEEeCCC----------------------------------eEEEEeCCCCCC
Q 020454 213 PTWF---------TSAAFLSIDDHRKFVAGTNDH----------------------------------QVRLYDTSAQRR 249 (326)
Q Consensus 213 ~~~v---------~~~~~~p~~~~~~l~~~~~dg----------------------------------~v~iwd~~~~~~ 249 (326)
+.|| .+++|+| +|+.|+.++.|. .|++||+.++ +
T Consensus 159 ~~~v~~ee~~~~~~~~~wSP--DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~-~ 235 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWSP--NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP-A 235 (719)
T ss_dssp CCHHHHHHTTCSSCCEEECT--TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH-H
T ss_pred ccceeeeecccCcccEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC-C
Confidence 2222 5889998 677898887552 7889999865 2
Q ss_pred ce--------eEEeecCCceEEEEecCCCCeEEEEcCC----CcEEEEE----CCCCeEEEEE----cceecceEE----
Q 020454 250 PV--------MSFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVD----IRTGKLLGCF----IGKCSGSIR---- 305 (326)
Q Consensus 250 ~~--------~~~~~~~~~i~~v~~s~~~~~l~~g~~d----g~v~iwd----~~~~~~~~~~----~~~~~~~v~---- 305 (326)
.. ..+..+...+..++|+||++++++.... ..|.+|| +.+++....+ .+| .+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~ 314 (719)
T 1z68_A 236 YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TGWAGGFFV 314 (719)
T ss_dssp HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SSCSSSSSC
T ss_pred ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC-CceEccccC
Confidence 21 1122466788999999998777764432 2488899 8777665444 345 66676
Q ss_pred -EEEECCCCCEEEE--eccCc
Q 020454 306 -SIARHPTLPIIAS--CGFLE 323 (326)
Q Consensus 306 -~l~~~p~~~~l~s--~s~D~ 323 (326)
.+.|+|+++.|+. ...||
T Consensus 315 ~~~~~spdg~~l~~~~~~~~g 335 (719)
T 1z68_A 315 STPVFSYDAISYYKIFSDKDG 335 (719)
T ss_dssp CCCEECTTSSCEEEEEECTTS
T ss_pred CccEECCCCCeEEEEEEccCC
Confidence 8899999986554 43444
No 165
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=1e-13 Score=112.03 Aligned_cols=221 Identities=8% Similarity=-0.072 Sum_probs=154.0
Q ss_pred CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~ 143 (326)
.+++|++++.|+.|.+||.++++.+..+.. .....+.++...+ +++ +++ +.++.|..||. ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~-------~~~~~~~~~~~~p--------dG~-ilv-s~~~~V~~~d~-~G 65 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL-------EKGWECNSVAATK--------AGE-ILF-SYSKGAKMITR-DG 65 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEEC-------CTTCCCCEEEECT--------TSC-EEE-ECBSEEEEECT-TS
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCC-------CccCCCcCeEECC--------CCC-EEE-eCCCCEEEECC-CC
Confidence 456899999999999999999999888774 1112344445433 334 444 45777888874 21
Q ss_pred ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC-CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454 144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (326)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (326)
+ .+..+.......+.++.+.++++++++.+. ++.|..+|. +++.++.......... ...+...+++.
T Consensus 66 ~--------~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~---~~~~~~~v~~~ 133 (276)
T 3no2_A 66 R--------ELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIER---PHAQFRQINKN 133 (276)
T ss_dssp C--------EEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSS---GGGSCSCCEEC
T ss_pred C--------EEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCc---ccccccCceEC
Confidence 1 333333322357889999999999988776 778888886 6776665432111000 01123344555
Q ss_pred ecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEccee--
Q 020454 223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-- 300 (326)
Q Consensus 223 p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~-- 300 (326)
+ +++++++...++.|..||.. + +.+.++... ....++...++|+.++++..++.|..+|..+|+.+.++..+.
T Consensus 134 ~--~G~~lv~~~~~~~v~~~d~~-G-~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~ 208 (276)
T 3no2_A 134 K--KGNYLVPLFATSEVREIAPN-G-QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE 208 (276)
T ss_dssp T--TSCEEEEETTTTEEEEECTT-S-CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB
T ss_pred C--CCCEEEEecCCCEEEEECCC-C-CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC
Confidence 4 67799999999999999998 6 567777665 345667888999999998888899999999999998886430
Q ss_pred ---cceEEEEEECCCCCEEEEe
Q 020454 301 ---SGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 301 ---~~~v~~l~~~p~~~~l~s~ 319 (326)
...+..++..+++.++++.
T Consensus 209 ~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 209 GVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp SCCCSEEEEEEECTTSCEEEEE
T ss_pred CccccccccceEcCCCCEEEEe
Confidence 1237888999999888876
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.65 E-value=6e-15 Score=135.99 Aligned_cols=233 Identities=6% Similarity=-0.068 Sum_probs=142.4
Q ss_pred eCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC--------
Q 020454 61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-------- 132 (326)
Q Consensus 61 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~-------- 132 (326)
+.+++.+++++ ||+|++||+.+++....+...... ..........+.+ ++..|+..+.+
T Consensus 24 w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Sp--------dg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 24 WISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD---EFGHSINDYSISP--------DGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp ECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT---TCCSCCCEEEECT--------TSSEEEEEEEEEECSSSCE
T ss_pred ECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh---hhcccccceEECC--------CCCEEEEEECCeeeEEEcc
Confidence 44555677775 999999999988865444421100 0011111133333 55677777765
Q ss_pred -CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454 133 -GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 133 -g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (326)
+.+.+||+...... . . ..+...+...+|+|+|+.||.+ .++.|++||+.+++..............-.
T Consensus 91 ~~~~~~~d~~~~~~~------~---l-~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g 159 (740)
T 4a5s_A 91 TASYDIYDLNKRQLI------T---E-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNG 159 (740)
T ss_dssp EEEEEEEETTTTEEC------C---S-SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEES
T ss_pred ceEEEEEECCCCcEE------E---c-ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecC
Confidence 56678887654311 0 0 1124578999999999999887 578999999988765432221111110001
Q ss_pred CCCce---------eeeEEeecCCCcEEEEEeCCC------------------------------------eEEEEeCCC
Q 020454 212 TPTWF---------TSAAFLSIDDHRKFVAGTNDH------------------------------------QVRLYDTSA 246 (326)
Q Consensus 212 ~~~~v---------~~~~~~p~~~~~~l~~~~~dg------------------------------------~v~iwd~~~ 246 (326)
++.|| .++.|+| ||+.|+..+.|. +|++||+.+
T Consensus 160 ~~~~v~~ee~~~~~~~~~wSp--Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~ 237 (740)
T 4a5s_A 160 ITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS 237 (740)
T ss_dssp BCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred cccccccchhcCCCcceEECC--CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence 12222 3478998 677888764221 588899887
Q ss_pred ---CCC-ceeEEee------cCCceEEEEecCCCCeEEEEcC----CCcEEEEECCCCe----EE--EEE--cceecceE
Q 020454 247 ---QRR-PVMSFDF------RETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGK----LL--GCF--IGKCSGSI 304 (326)
Q Consensus 247 ---~~~-~~~~~~~------~~~~i~~v~~s~~~~~l~~g~~----dg~v~iwd~~~~~----~~--~~~--~~~~~~~v 304 (326)
+.. ....+.. +...+..++|+|||+.++.... +..|++||+.+++ +. ..+ .+| .+.|
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~-~~~v 316 (740)
T 4a5s_A 238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST-TGWV 316 (740)
T ss_dssp CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS-SSCS
T ss_pred CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC-CceE
Confidence 521 2334432 6667999999999997664432 3369999999887 21 222 334 5555
Q ss_pred E-----EEEECCCCCEEE-Eec
Q 020454 305 R-----SIARHPTLPIIA-SCG 320 (326)
Q Consensus 305 ~-----~l~~~p~~~~l~-s~s 320 (326)
. ..+|+||++.|+ ..+
T Consensus 317 ~~~~~~~p~fspDG~~l~~~~s 338 (740)
T 4a5s_A 317 GRFRPSEPHFTLDGNSFYKIIS 338 (740)
T ss_dssp SSSSCCCCEECTTSSEEEEEEE
T ss_pred ccCcCCCceEcCCCCEEEEEEE
Confidence 4 789999999776 554
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=1.1e-12 Score=106.78 Aligned_cols=230 Identities=8% Similarity=0.051 Sum_probs=145.8
Q ss_pred eeeecCcccEEEEEecCCcCCCcceeeeccCC----CCCceEEEEEeeeCCCCCeEEEEec-CCcEEEEeccccceeeee
Q 020454 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDP----HSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAI 91 (326)
Q Consensus 17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~ 91 (326)
+++...++.|++|+.... ....+... ........+.+. ...+.++++... ++.|.+|+. +++.+..+
T Consensus 44 ~v~~~~~~~i~~~d~~g~------~~~~~~~~~~~~~~~~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~ 115 (286)
T 1q7f_A 44 IVADTNNHRIQIFDKEGR------FKFQFGECGKRDSQLLYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQ-YGQFVRKF 115 (286)
T ss_dssp EEEEGGGTEEEEECTTSC------EEEEECCBSSSTTCBSSEEEEEEE-TTTTEEEEEECGGGCEEEEECT-TSCEEEEE
T ss_pred EEEECCCCEEEEECCCCc------EEEEecccCCCcccccCceEEEEE-cCCCeEEEEcCCCCCEEEEECC-CCcEEEEe
Confidence 444467788999997643 33334321 111233344442 233444554433 899999994 66665555
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc-cCCCceEEEEE
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKV 170 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~ 170 (326)
.. .+...+.++.+.+ ++..+++...++.|.+|+.+.. .+..+.. .....+..+++
T Consensus 116 ~~-------~~~~~~~~i~~~~--------~g~l~v~~~~~~~i~~~~~~g~---------~~~~~~~~~~~~~p~~i~~ 171 (286)
T 1q7f_A 116 GA-------TILQHPRGVTVDN--------KGRIIVVECKVMRVIIFDQNGN---------VLHKFGCSKHLEFPNGVVV 171 (286)
T ss_dssp CT-------TTCSCEEEEEECT--------TSCEEEEETTTTEEEEECTTSC---------EEEEEECTTTCSSEEEEEE
T ss_pred cC-------ccCCCceEEEEeC--------CCCEEEEECCCCEEEEEcCCCC---------EEEEeCCCCccCCcEEEEE
Confidence 32 2224566677543 3445566667888999984321 2333332 22346889999
Q ss_pred cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-eEEEEeCCCCCC
Q 020454 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRR 249 (326)
Q Consensus 171 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-~v~iwd~~~~~~ 249 (326)
+++++++++...++.|++||.. ++.+..+.... ....+.++++.| +++++++...++ .|.+||.. + +
T Consensus 172 ~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g-------~~~~p~~i~~d~--~G~l~v~~~~~~~~i~~~~~~-g-~ 239 (286)
T 1q7f_A 172 NDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEG-------ITNYPIGVGINS--NGEILIADNHNNFNLTIFTQD-G-Q 239 (286)
T ss_dssp CSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTT-------TSCSEEEEEECT--TCCEEEEECSSSCEEEEECTT-S-C
T ss_pred CCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCC-------ccCCCcEEEECC--CCCEEEEeCCCCEEEEEECCC-C-C
Confidence 9999988888889999999974 44444433211 013467889987 566778877776 99999965 3 4
Q ss_pred ceeEEeecCC--ceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454 250 PVMSFDFRET--PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (326)
Q Consensus 250 ~~~~~~~~~~--~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~ 291 (326)
.+..+..+.. .+..++++|+|+++++ +.++.|++|++....
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 240 LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 4566655432 4778999999986666 679999999986543
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.63 E-value=9.2e-14 Score=118.10 Aligned_cols=260 Identities=8% Similarity=-0.045 Sum_probs=145.7
Q ss_pred eeeeecC-ccc--EEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454 16 RALTFDS-LGL--IKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (326)
Q Consensus 16 ~l~~~~~-~G~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~ 92 (326)
+|+.... +|. |.+|++.++ +.......+..... ...++++++.|+.++.++.|.+||+.+++....+.
T Consensus 49 ~l~~~~~~~g~~~l~~~d~~~g-----~~~~lt~~~~~~~~----~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~ 119 (388)
T 3pe7_A 49 KLLFGGAFDGPWNYYLLDLNTQ-----VATQLTEGRGDNTF----GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ 119 (388)
T ss_dssp EEEEEECTTSSCEEEEEETTTC-----EEEECCCSSCBCSS----SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred EEEEEEcCCCCceEEEEeCCCC-----ceEEeeeCCCCCcc----ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence 3555554 674 777777765 33222222221111 12356677789999999999999998887654433
Q ss_pred ccCCCCCCCCCCCeeeeec-ccccccccCCCCceEEEE----------------------ecCCcEEEEEcccccccccc
Q 020454 93 NAGDSGAQPEDDGIVGLHL-FKRQREESSSRSRTLLTC----------------------TTKGKASMRSIEVTKVSAES 149 (326)
Q Consensus 93 ~~~~~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~l~~~----------------------~~~g~v~i~~~~~~~~~~~~ 149 (326)
. +...+....+ .. +++..++.. ..+..|++|++....
T Consensus 120 ~--------~~~~~~~~~~~~~-------~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~----- 179 (388)
T 3pe7_A 120 V--------PAEWVGYGTWVAN-------SDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE----- 179 (388)
T ss_dssp C--------CTTEEEEEEEEEC-------TTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-----
T ss_pred c--------hhhcccccceeEC-------CCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-----
Confidence 2 1122221221 11 022333321 123456666654322
Q ss_pred ccceEEEEEccCCCceEEEEEcC-CCCEEEEecCC------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454 150 SCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (326)
Q Consensus 150 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (326)
...+.. ....+..+.|+| +++.|+....+ ..|.++|+..++... +..+.. ...+....|+
T Consensus 180 ---~~~l~~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~-------~~~~~~~~~s 246 (388)
T 3pe7_A 180 ---STVILQ--ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAE-------GESCTHEFWV 246 (388)
T ss_dssp ---EEEEEE--ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCT-------TEEEEEEEEC
T ss_pred ---eEEeec--CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCC-------CcccccceEC
Confidence 111111 234688999999 99888766553 368888876554322 211110 1246678899
Q ss_pred ecCCCcEEEEEeC-C----CeEEEEeCCCCCC-ceeEEeecCC---ceEEEEecCCCCeEEEE---------cCCCcEEE
Q 020454 223 SIDDHRKFVAGTN-D----HQVRLYDTSAQRR-PVMSFDFRET---PIKAVAEEPDSFNIYIG---------NGSGDLAS 284 (326)
Q Consensus 223 p~~~~~~l~~~~~-d----g~v~iwd~~~~~~-~~~~~~~~~~---~i~~v~~s~~~~~l~~g---------~~dg~v~i 284 (326)
| +++.|+..+. + ..|++||+.+++. .+..+..+.. ....++|+|||+.|+.. ..+..|++
T Consensus 247 p--dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~ 324 (388)
T 3pe7_A 247 P--DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV 324 (388)
T ss_dssp T--TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred C--CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence 8 5555654332 2 2499999987632 1222221000 01123799999988853 45668999
Q ss_pred EECCCCeEEEEEcceecc-----------eEEEEEECCCCCEEEEecc
Q 020454 285 VDIRTGKLLGCFIGKCSG-----------SIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 285 wd~~~~~~~~~~~~~~~~-----------~v~~l~~~p~~~~l~s~s~ 321 (326)
||+.+++.. .+..+ .. .+.+++|+|+++.|+..+.
T Consensus 325 ~d~~~~~~~-~l~~~-~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 325 FNMKNGTQH-RVARH-DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp EETTTTEEE-EEEEC-CCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred EeccCCceE-Eeccc-cCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 999988764 44444 44 4788999999998876653
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.62 E-value=3.7e-13 Score=113.57 Aligned_cols=242 Identities=12% Similarity=0.060 Sum_probs=142.2
Q ss_pred eeeeecCcccEEEEEec-CCcCCCcceeeeccC--CCCCceEEEEEeeeCCCCCe--EEEEe-------------cCCcE
Q 020454 16 RALTFDSLGLIKVIEAR-GEHGGVPKVVERWGD--PHSSNCVLAASIDDSQNDPL--LAVAR-------------KNGLT 77 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--l~~g~-------------~dg~i 77 (326)
+|++++.+ .|++|++. .+ ++...... ...... ...++++++ ++++. .+|++
T Consensus 53 ~l~~~~~~-~v~~~~~~~~g-----~~~~~~~~~~~g~~~~-----~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v 121 (365)
T 1jof_A 53 NIYGAAMK-KWSSFAVKSPT-----EIVHEASHPIGGHPRA-----NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG 121 (365)
T ss_dssp EEEEEEBT-EEEEEEEEETT-----EEEEEEEEECCSSGGG-----GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred EEEEEccc-eEEEEEECCCC-----CEEEeeEeecCCCCcc-----EEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence 35666665 89999987 44 22211111 111111 223455663 44443 68999
Q ss_pred EEEecc-ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccc-cccccccccceE
Q 020454 78 DILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEV-TKVSAESSCSTV 154 (326)
Q Consensus 78 ~i~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~-~~~~~~~~~~~~ 154 (326)
.+|++. +++....+..+. ..+...+.++.+.+ ++..++++. .++.|.+|+++. ... ..+
T Consensus 122 ~v~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~sp--------dG~~l~~~~~~~~~v~~~~~~~~g~~------~~~ 183 (365)
T 1jof_A 122 NVFSVSETGKLEKNVQNYE----YQENTGIHGMVFDP--------TETYLYSADLTANKLWTHRKLASGEV------ELV 183 (365)
T ss_dssp EEEEECTTCCEEEEEEEEE----CCTTCCEEEEEECT--------TSSEEEEEETTTTEEEEEEECTTSCE------EEE
T ss_pred EEEccCCCCcCcceEeeEE----eCCCCcceEEEECC--------CCCEEEEEcCCCCEEEEEEECCCCCE------EEe
Confidence 999996 465544333210 01224566677644 445666655 468999999862 210 112
Q ss_pred EEEEcc-CCCceEEEEEcCCCCEEEEecC-CCeEEEEECC--Cceeee---eecCCCCCCCCcCCCC------ceeeeE-
Q 020454 155 KSWNVC-ASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLD--KCEKIW---TAKPPPKNSLGIFTPT------WFTSAA- 220 (326)
Q Consensus 155 ~~~~~~-~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~--~~~~~~---~~~~~~~~~~~~~~~~------~v~~~~- 220 (326)
...... +...+..++|+|++++|++++. ++.|.+|++. +++... .+........ .+.. .+..++
T Consensus 184 ~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 184 GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP--DRDPETGKGLYRADVCA 261 (365)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC--CBCTTTSSBSEEEEEEE
T ss_pred eeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC--CcccccccccccccEEE
Confidence 223322 2557899999999998877664 6899999865 454321 1221111100 0011 578899
Q ss_pred EeecCCCcEEEEEeCC-C-----eEEEEeCCCCCCcee---EEeecCCceEEEEecC---CCCeEEEEcCC-CcEEEEEC
Q 020454 221 FLSIDDHRKFVAGTND-H-----QVRLYDTSAQRRPVM---SFDFRETPIKAVAEEP---DSFNIYIGNGS-GDLASVDI 287 (326)
Q Consensus 221 ~~p~~~~~~l~~~~~d-g-----~v~iwd~~~~~~~~~---~~~~~~~~i~~v~~s~---~~~~l~~g~~d-g~v~iwd~ 287 (326)
|+| ++++|+++..+ . .|.+|++....+... ....+......++|+| +|++|++++.+ +.|.+|++
T Consensus 262 ~sp--dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 262 LTF--SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp ECT--TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred ECC--CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 988 56677766543 2 899999863223222 1223444567789999 89999988865 89999998
Q ss_pred CCC
Q 020454 288 RTG 290 (326)
Q Consensus 288 ~~~ 290 (326)
...
T Consensus 340 ~~~ 342 (365)
T 1jof_A 340 KDE 342 (365)
T ss_dssp ETT
T ss_pred chh
Confidence 766
No 170
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.61 E-value=1.6e-12 Score=107.99 Aligned_cols=248 Identities=7% Similarity=-0.071 Sum_probs=157.1
Q ss_pred cCcccEEEEEecCCcCCCcceeeecc----CCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCC
Q 020454 21 DSLGLIKVIEARGEHGGVPKVVERWG----DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (326)
Q Consensus 21 ~~~G~i~vw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~ 96 (326)
..++.|.++|..++ ++...+. ...-......+.+. .+.+.++...++.|.+||..+++.+..+...
T Consensus 14 ~~~~~l~~~d~~t~-----~~~~~i~~~~n~~~lg~~~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~-- 83 (328)
T 3dsm_A 14 YSNATLSYYDPATC-----EVENEVFYRANGFKLGDVAQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVGRITGF-- 83 (328)
T ss_dssp SCCBEEEEEETTTT-----EEECSHHHHHHSSCCBSCEEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEEEEECC--
T ss_pred CCCceEEEEECCCC-----EEhhhhHhhhcCcccCccceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEEEcCCC--
Confidence 45899999999877 4433221 01111112223332 2345666666899999999999987776421
Q ss_pred CCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEEEEEccCC----CceEEEEEc
Q 020454 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCAS----GTIAFSKVD 171 (326)
Q Consensus 97 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~ 171 (326)
....++++.+ ++ .++++. .++.|.++|..... ....+..... .....+++
T Consensus 84 -------~~p~~i~~~~--------~g-~lyv~~~~~~~v~~iD~~t~~--------~~~~i~~g~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 84 -------TSPRYIHFLS--------DE-KAYVTQIWDYRIFIINPKTYE--------ITGYIECPDMDMESGSTEQMVQ- 138 (328)
T ss_dssp -------SSEEEEEEEE--------TT-EEEEEEBSCSEEEEEETTTTE--------EEEEEECTTCCTTTCBCCCEEE-
T ss_pred -------CCCcEEEEeC--------CC-eEEEEECCCCeEEEEECCCCe--------EEEEEEcCCccccCCCcceEEE-
Confidence 3455666533 33 565555 78999999976433 2233333220 14455666
Q ss_pred CCCCEEEEec-CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC----------CeEE
Q 020454 172 ISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----------HQVR 240 (326)
Q Consensus 172 ~~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d----------g~v~ 240 (326)
.+++++++.. .++.|.++|+.+++.+..+... .....+.+.| ++++++++..+ +.|.
T Consensus 139 ~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g----------~~p~~i~~~~--dG~l~v~~~~~~~~~~~~~~~~~v~ 206 (328)
T 3dsm_A 139 YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG----------IQPTSLVMDK--YNKMWTITDGGYEGSPYGYEAPSLY 206 (328)
T ss_dssp ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS----------SCBCCCEECT--TSEEEEEBCCBCTTCSSCBCCCEEE
T ss_pred ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC----------CCccceEEcC--CCCEEEEECCCccCCccccCCceEE
Confidence 3444444433 4889999999998877665431 1234667776 56666666554 7999
Q ss_pred EEeCCCCCCceeEEeec-CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE--EcceecceEEEEEECC-CCCEE
Q 020454 241 LYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHP-TLPII 316 (326)
Q Consensus 241 iwd~~~~~~~~~~~~~~-~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~p-~~~~l 316 (326)
++|..+. +....+... ......++|+|++++|+++.. .|.+||..+++.... +..+ ......++++| ++.+.
T Consensus 207 ~id~~t~-~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~ly 282 (328)
T 3dsm_A 207 RIDAETF-TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVY 282 (328)
T ss_dssp EEETTTT-EEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEE
T ss_pred EEECCCC-eEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEE
Confidence 9999876 444455442 236789999999999998766 899999998876421 1211 35688999999 55555
Q ss_pred EEe
Q 020454 317 ASC 319 (326)
Q Consensus 317 ~s~ 319 (326)
++.
T Consensus 283 va~ 285 (328)
T 3dsm_A 283 VAD 285 (328)
T ss_dssp EEE
T ss_pred EEc
Confidence 655
No 171
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=9.6e-13 Score=107.66 Aligned_cols=219 Identities=11% Similarity=-0.035 Sum_probs=142.9
Q ss_pred eCCCCC-eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454 61 DSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (326)
Q Consensus 61 ~~~~~~-~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~ 139 (326)
+++.++ +++++..++.|..|+..++ ...+.. ....+.++.+.+ ++..+++...++.|.+|+
T Consensus 35 ~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~--------~~~~~~~l~~~~--------dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 35 YVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH--------PSHHQNGHCLNK--------QGHLIACSHGLRRLERQR 96 (296)
T ss_dssp EEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES--------SCSSEEEEEECT--------TCCEEEEETTTTEEEEEC
T ss_pred EeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC--------CCCCcceeeECC--------CCcEEEEecCCCeEEEEc
Confidence 344555 7888889999999999766 344432 224567777543 344444444568899998
Q ss_pred ccccccccccccceEEEEE-c---cCCCceEEEEEcCCCCEEEE----ec-------------CCCeEEEEECCCceeee
Q 020454 140 IEVTKVSAESSCSTVKSWN-V---CASGTIAFSKVDISEKFSLF----GG-------------KGVEVNVWDLDKCEKIW 198 (326)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~s----g~-------------~d~~i~iwd~~~~~~~~ 198 (326)
..... +..+. . .....+..++++|+|+++++ |. ..+.|..++.. ++...
T Consensus 97 ~~~g~---------~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (296)
T 3e5z_A 97 EPGGE---------WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA 166 (296)
T ss_dssp STTCC---------EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE
T ss_pred CCCCc---------EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE
Confidence 64322 11111 0 11234667999999998887 33 13456666654 33322
Q ss_pred eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc---eeEEeecCCceEEEEecCCCCeEEE
Q 020454 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYI 275 (326)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~i~~v~~s~~~~~l~~ 275 (326)
+... ......++|+| +++.+++.+.++.|.+||+...... ...+..+...+..++++++|+++++
T Consensus 167 -~~~~---------~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~ 234 (296)
T 3e5z_A 167 -PIRD---------RVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS 234 (296)
T ss_dssp -EECC---------CSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEE
T ss_pred -eecC---------CCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEE
Confidence 2111 13467889988 5557777788899999998732132 1222234455678999999986665
Q ss_pred EcCCCcEEEEECCCCeEEEEEcceecceEEEEEE-CCCCCEEEEeccCcc
Q 020454 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR-HPTLPIIASCGFLEA 324 (326)
Q Consensus 276 g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~p~~~~l~s~s~D~~ 324 (326)
. ++.|.+||.. ++.+..+..+ .. +.+++| .|+++.|+.++.++-
T Consensus 235 ~--~~~v~~~~~~-g~~~~~~~~~-~~-~~~~~f~~~d~~~L~v~t~~~l 279 (296)
T 3e5z_A 235 A--GDGVHVLTPD-GDELGRVLTP-QT-TSNLCFGGPEGRTLYMTVSTEF 279 (296)
T ss_dssp E--TTEEEEECTT-SCEEEEEECS-SC-CCEEEEESTTSCEEEEEETTEE
T ss_pred c--CCeEEEECCC-CCEEEEEECC-CC-ceeEEEECCCCCEEEEEcCCeE
Confidence 5 7899999986 7888888876 66 999999 589988888887753
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.59 E-value=2.3e-13 Score=114.61 Aligned_cols=220 Identities=12% Similarity=0.077 Sum_probs=133.4
Q ss_pred cCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec----------CCcEEEEEccc
Q 020454 73 KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT----------KGKASMRSIEV 142 (326)
Q Consensus 73 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~----------~g~v~i~~~~~ 142 (326)
.|+.|.+||..+++.+..+.. +..+ ++++.+ ++.+++++.. ++.|.+||...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~--------g~~p--~i~~sp--------dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPT--------AFNG--HVQVSN--------DGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEEC--------CEEE--EEEECT--------TSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred ccCeEEEEECCCCeEEEEecC--------CCCC--ceEECC--------CCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 478999999988888766552 2233 566544 5567777763 56799999754
Q ss_pred cccccccccceEEEEEcc-----CCCceEEEEEcCCCCEEEEecC--CCeEEEEECCCceeeee-ecCCCC--------C
Q 020454 143 TKVSAESSCSTVKSWNVC-----ASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWT-AKPPPK--------N 206 (326)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~sg~~--d~~i~iwd~~~~~~~~~-~~~~~~--------~ 206 (326)
.. .+...... .......++++|++++|+++.. ++.|.+||+.+++.+.. +..... .
T Consensus 91 ~~--------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~ 162 (361)
T 2oiz_A 91 LT--------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNR 162 (361)
T ss_dssp CC--------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTS
T ss_pred Cc--------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCC
Confidence 33 23333321 1234667899999999988764 57899999999887665 332110 0
Q ss_pred -C--CCcCCCCceeeeE----------------Eeec---------CCCcEEEEEeCCCeEEEEeCCCCCCce-eEEeec
Q 020454 207 -S--LGIFTPTWFTSAA----------------FLSI---------DDHRKFVAGTNDHQVRLYDTSAQRRPV-MSFDFR 257 (326)
Q Consensus 207 -~--~~~~~~~~v~~~~----------------~~p~---------~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~ 257 (326)
. ........+.-+. |.+. .++..++..+.++.|.++|+......+ ..+...
T Consensus 163 ~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~ 242 (361)
T 2oiz_A 163 PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLL 242 (361)
T ss_dssp SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESC
T ss_pred CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccccc
Confidence 0 0000000000011 1110 011233344455667777765431111 111110
Q ss_pred C----------CceEEEEecCCCCeEEEEcC-----------CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEE
Q 020454 258 E----------TPIKAVAEEPDSFNIYIGNG-----------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII 316 (326)
Q Consensus 258 ~----------~~i~~v~~s~~~~~l~~g~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 316 (326)
. .....++|+|+++.++++.. .+.|.+||+.+++.+.++..+ . +.+|+|+|++++|
T Consensus 243 ~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~--p~~ia~spdg~~l 319 (361)
T 2oiz_A 243 NDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D--ALSMTIDQQRNLM 319 (361)
T ss_dssp CHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T--CCEEEEETTTTEE
T ss_pred CccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-C--eeEEEECCCCCEE
Confidence 0 11112689999888887643 348999999999999999976 5 9999999999999
Q ss_pred EEecc
Q 020454 317 ASCGF 321 (326)
Q Consensus 317 ~s~s~ 321 (326)
++++.
T Consensus 320 ~v~n~ 324 (361)
T 2oiz_A 320 LTLDG 324 (361)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 98875
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.58 E-value=7.1e-12 Score=104.22 Aligned_cols=223 Identities=11% Similarity=0.056 Sum_probs=141.6
Q ss_pred CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC----CcEEE
Q 020454 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASM 137 (326)
Q Consensus 62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~----g~v~i 137 (326)
++++.+++++..++.|.+||..+++...... .....+.++.+.+ ++..+++...+ +.|.+
T Consensus 53 ~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~~~~~~i~~~~--------dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 53 DRQGQLFLLDVFEGNIFKINPETKEIKRPFV--------SHKANPAAIKIHK--------DGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp CTTSCEEEEETTTCEEEEECTTTCCEEEEEE--------CSSSSEEEEEECT--------TSCEEEEECTTSSSCCEEEE
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCcEEEEee--------CCCCCcceEEECC--------CCcEEEEeCCCCCCCceEEE
Confidence 3556667778889999999998777644332 1124677777643 33444444444 58888
Q ss_pred EEccccccccccccceEEEEE-ccCCCceEEEEEcCCCCEEEEecC------CCeEEEEECCCceeeeeecCCCCCCCCc
Q 020454 138 RSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (326)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 210 (326)
|+.+.... ..+.. ......+..+.++|+++++++... .+.|..+|..+++.......
T Consensus 117 ~d~~~~~~--------~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------- 180 (333)
T 2dg1_A 117 ATENGDNL--------QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-------- 180 (333)
T ss_dssp ECTTSCSC--------EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--------
T ss_pred EeCCCCEE--------EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--------
Confidence 88654321 11111 123456899999999988877654 35566677655443221111
Q ss_pred CCCCceeeeEEeecCCCcEE-EEEeCCCeEEEEeCCCCCCceeEE------eec-CCceEEEEecCCCCeEEEEcCCCcE
Q 020454 211 FTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRRPVMSF------DFR-ETPIKAVAEEPDSFNIYIGNGSGDL 282 (326)
Q Consensus 211 ~~~~~v~~~~~~p~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~------~~~-~~~i~~v~~s~~~~~l~~g~~dg~v 282 (326)
...+..++|+| +++.+ ++.+.++.|.+||+......+..+ ... ...+..++++++|+++++...++.|
T Consensus 181 --~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v 256 (333)
T 2dg1_A 181 --ISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV 256 (333)
T ss_dssp --ESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred --CCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 02366888887 45444 555668899999986421222211 111 1367889999999887777778899
Q ss_pred EEEECCCCeEEEEEcceecc------eEEEEEECCCCCEEEEeccC
Q 020454 283 ASVDIRTGKLLGCFIGKCSG------SIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~------~v~~l~~~p~~~~l~s~s~D 322 (326)
.+||. +++.+..+..+ .. .+.+++|+|++..|+.++.+
T Consensus 257 ~~~d~-~g~~~~~~~~~-~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 257 LVFNK-RGYPIGQILIP-GRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECT-TSCEEEEEECT-TGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEECC-CCCEEEEEEcC-CCccccccCcceEEECCCCCEEEEEeCc
Confidence 99998 56677666543 32 68999999998777665554
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.58 E-value=8.4e-13 Score=121.74 Aligned_cols=273 Identities=8% Similarity=-0.055 Sum_probs=148.8
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCc-eEEEEEeeeCCCCCeEEEEecC---------CcEEEEecccc
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSN-CVLAASIDDSQNDPLLAVARKN---------GLTDILNPLNG 85 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~d---------g~i~i~~~~~~ 85 (326)
+++..+ +|.|++|++.++ +....+..+.... .+..-.+..++++++|+.++.+ +.+.+||+.++
T Consensus 29 ~~~~~~-~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~ 102 (740)
T 4a5s_A 29 EYLYKQ-ENNILVFNAEYG-----NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR 102 (740)
T ss_dssp EEEEEE-TTEEEEEETTTC-----CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred cEEEEc-CCcEEEEECCCC-----ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC
Confidence 444444 899999999877 2211222221111 1101112346677889998886 56679999888
Q ss_pred ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccce-EEEEEccC---
Q 020454 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST-VKSWNVCA--- 161 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~-~~~~~~~~--- 161 (326)
+... +. .+.+.+....+.+ ++..|+.+ .++.|++|++.......-..++. -.+++-..
T Consensus 103 ~~~~-l~--------~~~~~~~~~~~SP--------dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v 164 (740)
T 4a5s_A 103 QLIT-EE--------RIPNNTQWVTWSP--------VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV 164 (740)
T ss_dssp EECC-SS--------CCCTTEEEEEECS--------STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred cEEE-cc--------cCCCcceeeEECC--------CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCccccc
Confidence 7643 22 2234566666644 55566555 67899999876533211111110 00111000
Q ss_pred -----CCceEEEEEcCCCCEEEEecCCC------------------------------------eEEEEECCC---ce--
Q 020454 162 -----SGTIAFSKVDISEKFSLFGGKGV------------------------------------EVNVWDLDK---CE-- 195 (326)
Q Consensus 162 -----~~~v~~~~~~~~~~~l~sg~~d~------------------------------------~i~iwd~~~---~~-- 195 (326)
-.....+.|+|||+.||.++.|. .|.+||+.+ ++
T Consensus 165 ~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~ 244 (740)
T 4a5s_A 165 YEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA 244 (740)
T ss_dssp HHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC
T ss_pred ccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc
Confidence 01223588999999998875332 466677766 52
Q ss_pred eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe----CCCeEEEEeCCCCCC-----ceeEE--eecCCceE--
Q 020454 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT----NDHQVRLYDTSAQRR-----PVMSF--DFRETPIK-- 262 (326)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~----~dg~v~iwd~~~~~~-----~~~~~--~~~~~~i~-- 262 (326)
....+..... ...+..++..++|+| +++.++... .+..|++||+.+++. .+..+ ..+...+.
T Consensus 245 ~~~~l~~~~~---~~~~~~~~~~~~wsp--dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~ 319 (740)
T 4a5s_A 245 TSIQITAPAS---MLIGDHYLCDVTWAT--QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF 319 (740)
T ss_dssp CEEEECCCHH---HHTSCEEEEEEEEEE--TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred eEEEecCCcc---CCCCCeEEEEEEEeC--CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccC
Confidence 1111111000 001335688999999 565555443 234799999987630 12222 33444443
Q ss_pred ---EEEecCCCCeEE-EEc-CCC--cEEEEECCCCeEEEEEcceecceEEEEE-ECCCCCEEEEec
Q 020454 263 ---AVAEEPDSFNIY-IGN-GSG--DLASVDIRTGKLLGCFIGKCSGSIRSIA-RHPTLPIIASCG 320 (326)
Q Consensus 263 ---~v~~s~~~~~l~-~g~-~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~-~~p~~~~l~s~s 320 (326)
.++|+|||+.|+ ..+ .+| .|++||+.+++... +... .-.|..+. ++ .+.+++++.
T Consensus 320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g-~~~v~~~~~~d-~~~i~f~~~ 382 (740)
T 4a5s_A 320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKG-TWEVIGIEALT-SDYLYYISN 382 (740)
T ss_dssp SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCS-SSCEEEEEEEC-SSEEEEEES
T ss_pred cCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccC-CEEEEEEEEEe-CCEEEEEEe
Confidence 678999999876 554 444 58888988765543 3322 34455543 43 333444444
No 175
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=1.2e-11 Score=99.88 Aligned_cols=238 Identities=11% Similarity=0.025 Sum_probs=156.8
Q ss_pred CCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454 12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (326)
Q Consensus 12 ~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~ 91 (326)
.|.-.+++++.++.|++||.+++ ++..++..+.. .....+.+ .+++++++ +.++.|..||. +++.+..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG-----~~~w~~~~~~~-~~~~~~~~--~pdG~ilv--s~~~~V~~~d~-~G~~~W~~ 71 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTK-----EIVWEYPLEKG-WECNSVAA--TKAGEILF--SYSKGAKMITR-DGRELWNI 71 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTT-----EEEEEEECCTT-CCCCEEEE--CTTSCEEE--ECBSEEEEECT-TSCEEEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCC-----eEEEEeCCCcc-CCCcCeEE--CCCCCEEE--eCCCCEEEECC-CCCEEEEE
Confidence 35578999999999999999777 66555554321 11112222 33555666 55788999999 88888877
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec-CCcEEEEEccccccccccccceEEEEEccCC-----Cce
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCAS-----GTI 165 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~-~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v 165 (326)
.. .....+.+....+ +++.+++.+. ++.+..++.+. ..+..+..... ...
T Consensus 72 ~~-------~~~~~~~~~~~~~--------dG~~lv~~~~~~~~v~~vd~~G---------k~l~~~~~~~~~~~~~~~~ 127 (276)
T 3no2_A 72 AA-------PAGCEMQTARILP--------DGNALVAWCGHPSTILEVNMKG---------EVLSKTEFETGIERPHAQF 127 (276)
T ss_dssp EC-------CTTCEEEEEEECT--------TSCEEEEEESTTEEEEEECTTS---------CEEEEEEECCSCSSGGGSC
T ss_pred cC-------CCCccccccEECC--------CCCEEEEecCCCCEEEEEeCCC---------CEEEEEeccCCCCcccccc
Confidence 74 1123455455443 5566666665 56655554211 12333332111 134
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC
Q 020454 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (326)
Q Consensus 166 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~ 245 (326)
..+++.++++++++...++.|.+||.. ++.++++.... ++.++.+.+ ++++++++..+++|..+|..
T Consensus 128 ~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~----------~~~~~~~~~--~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 128 RQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG----------TPFSSAFLD--NGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp SCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS----------CCCEEEECT--TSCEEEECBTTSEEEEECTT
T ss_pred cCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC----------CccceeEcC--CCCEEEEeCCCCeEEEEeCc
Confidence 456778899999999999999999998 99988876531 233555555 56688888888899999999
Q ss_pred CCCCceeEEeecC------CceEEEEecCCCCeEEEEcCC--------CcEEEEEC-CCCeEEEEEcc
Q 020454 246 AQRRPVMSFDFRE------TPIKAVAEEPDSFNIYIGNGS--------GDLASVDI-RTGKLLGCFIG 298 (326)
Q Consensus 246 ~~~~~~~~~~~~~------~~i~~v~~s~~~~~l~~g~~d--------g~v~iwd~-~~~~~~~~~~~ 298 (326)
++ +.+.++.... ..+..++..++|+.+++.... +..+++.+ ++++.+.+|..
T Consensus 195 tG-~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 195 SN-RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp TC-CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred CC-cEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 87 5677775432 237888889999988876321 23456666 57888888764
No 176
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.55 E-value=3.9e-12 Score=102.46 Aligned_cols=224 Identities=7% Similarity=-0.102 Sum_probs=140.0
Q ss_pred CCCCeEE-EEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcc
Q 020454 63 QNDPLLA-VARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (326)
Q Consensus 63 ~~~~~l~-~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~ 141 (326)
+++.+++ +...++.|.+|+..++.. ..+.. .+...+.++++.+ ++. ++.+..++.|.+|+.+
T Consensus 33 ~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~-------~~~~~p~~i~~~~--------~g~-l~v~~~~~~i~~~d~~ 95 (270)
T 1rwi_B 33 SAGNVYVTSEGMYGRVVKLATGSTGT-TVLPF-------NGLYQPQGLAVDG--------AGT-VYVTDFNNRVVTLAAG 95 (270)
T ss_dssp TTCCEEEEECSSSCEEEEECC------EECCC-------CSCCSCCCEEECT--------TCC-EEEEETTTEEEEECTT
T ss_pred CCCCEEEEccCCCCcEEEecCCCccc-ceEee-------CCcCCcceeEECC--------CCC-EEEEcCCCEEEEEeCC
Confidence 3445555 336789999999755443 22111 1113455566533 333 5555448888888855
Q ss_pred ccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (326)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (326)
... +..+.......+..++++++++++++...++.|.+|+..+......... ....+.++++
T Consensus 96 ~~~---------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~p~~i~~ 157 (270)
T 1rwi_B 96 SNN---------QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT---------GLNDPDGVAV 157 (270)
T ss_dssp CSC---------CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC---------SCCSCCCEEE
T ss_pred Cce---------EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc---------cCCCceeEEE
Confidence 322 1122222235688999999999888777788999997655433221111 0123567888
Q ss_pred eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceec
Q 020454 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS 301 (326)
Q Consensus 222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~ 301 (326)
.| +++++++...++.|.+||.... ........+...+..++++++|..+++...++.|.+||............+ .
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-~ 233 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG-L 233 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCS-C
T ss_pred eC--CCCEEEEECCCCEEEEEecCCC-ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCC-C
Confidence 87 4557777777889999998865 222211222356889999999977777777889999998765443222222 3
Q ss_pred ceEEEEEECCCCCEEEEeccCccC
Q 020454 302 GSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 302 ~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..+.+++++|++.++++.+.++.+
T Consensus 234 ~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 234 NTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CCceeEEECCCCCEEEEECCCCEE
Confidence 568999999999988888877654
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.55 E-value=2.1e-12 Score=117.55 Aligned_cols=233 Identities=10% Similarity=-0.000 Sum_probs=137.8
Q ss_pred eeeCCCCCe-EEEEec-CCcEEEEecc--c-cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC-
Q 020454 59 IDDSQNDPL-LAVARK-NGLTDILNPL--N-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK- 132 (326)
Q Consensus 59 ~~~~~~~~~-l~~g~~-dg~i~i~~~~--~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~- 132 (326)
+..++++++ |+.++. +..|.++++. . ++. ..+.... ...+...+..+.+.+ ++..|+.++.+
T Consensus 84 ~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~---~~~~~~~~~~~~~sp--------Dg~~l~~~~~~~ 151 (662)
T 3azo_A 84 GVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVS---AVGGGLRWADPVLLP--------ERGEVWCMAEEF 151 (662)
T ss_dssp EECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCC---CSTTCEEEEEEEEET--------TTTEEEEEEEEE
T ss_pred eeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCc---cCCCCccccCcEECC--------CCCEEEEEEecc
Confidence 333355666 665543 5667777764 2 433 2222100 001334566677655 56778888776
Q ss_pred ---------CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC--------CeEEEEECC-Cc
Q 020454 133 ---------GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG--------VEVNVWDLD-KC 194 (326)
Q Consensus 133 ---------g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d--------~~i~iwd~~-~~ 194 (326)
..|++|+++.... ...+..+.........+..++|+|+|++|+.++.+ ..|.+||+. ++
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g 228 (662)
T 3azo_A 152 TGEGPSDVRRFLAAVPLDGSAA---ADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG 228 (662)
T ss_dssp CSSSTTCEEEEEEEEETTSTTT---TCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred cCCCCCCceeEEEEEECCCCcc---ccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence 5788888764100 00001111110223467778999999999877754 379999998 46
Q ss_pred ---eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC--eEEEEeCCCCCCceeEEeecCCc---------
Q 020454 195 ---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QVRLYDTSAQRRPVMSFDFRETP--------- 260 (326)
Q Consensus 195 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~--------- 260 (326)
+.......+ ...+..+.|+| ++++++++..++ .|.+||+.++ + ...+..+...
T Consensus 229 ~~~~~~~l~~~~---------~~~~~~~~~sp--dg~l~~~~~~~~~~~l~~~~~~~~-~-~~~l~~~~~~~~~p~w~~~ 295 (662)
T 3azo_A 229 RFADTRTLLGGP---------EEAIAQAEWAP--DGSLIVATDRTGWWNLHRVDPATG-A-ATQLCRREEEFAGPLWTPG 295 (662)
T ss_dssp CEEEEEEEEEET---------TBCEEEEEECT--TSCEEEEECTTSSCEEEEECTTTC-C-EEESSCCSSBSSCCCCSTT
T ss_pred cccccEEeCCCC---------CceEcceEECC--CCeEEEEECCCCCeEEEEEECCCC-c-eeecccccccccCcccccc
Confidence 332222211 14577889998 556788888888 6666776544 3 2233222111
Q ss_pred eEEEEecCCCCeEEEEcCCCcEEEE--ECCCCeEEEEEcceecceEEEE-EECCCCCEEEEeccC
Q 020454 261 IKAVAEEPDSFNIYIGNGSGDLASV--DIRTGKLLGCFIGKCSGSIRSI-ARHPTLPIIASCGFL 322 (326)
Q Consensus 261 i~~v~~s~~~~~l~~g~~dg~v~iw--d~~~~~~~~~~~~~~~~~v~~l-~~~p~~~~l~s~s~D 322 (326)
+..++|+|+++++++++. +.++|| |+.+++ +..+..| .+.+..+ +++++.-++++++.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~-~~~~~~~~s~~~~~~~~~~~~~~ 357 (662)
T 3azo_A 296 MRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGP-WTEWAATLTVSGTRAVGVAASPR 357 (662)
T ss_dssp CCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSS-CCEEEEEEEEETTEEEEEEEETT
T ss_pred CceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCC-CCeEEEEEecCCCEEEEEEcCCC
Confidence 467899999999999998 999999 655565 5667776 7778877 665444344444443
No 178
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.54 E-value=7.6e-13 Score=110.90 Aligned_cols=179 Identities=9% Similarity=0.039 Sum_probs=125.3
Q ss_pred CeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccc---cccceEEEEEccCCCceEEEEEcCCCCEEEEec
Q 020454 105 GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE---SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG 181 (326)
Q Consensus 105 ~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 181 (326)
++..++..+ ..+.+++++.+ .+.+|+++....... ..-....... ... |..++| ++++|+++
T Consensus 39 ~~nlLais~--------~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISN--------SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEET--------TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcC--------CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEE--CCCEEEEE-
Confidence 455566554 55677777776 556699765431100 0011212223 345 999999 88999998
Q ss_pred CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCce
Q 020454 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (326)
Q Consensus 182 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i 261 (326)
.++.|++||+++.........+. ..+.++.+.+. .+++++.||.|.+||+... ... . ....|
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~~---------~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~-~~~-~---~~~~V 165 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSFE---------KPVFQLKNVNN----TLVILNSVNDLSALDLRTK-STK-Q---LAQNV 165 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEECS---------SCEEEEEECSS----EEEEEETTSEEEEEETTTC-CEE-E---EEESE
T ss_pred cCCcEEEEEchhhhccCccceee---------cceeeEEecCC----CEEEEECCCCEEEEEccCC-ccc-c---ccCCc
Confidence 88999999998755433333322 23556666542 3888999999999999966 322 2 33579
Q ss_pred EEEEecCCCCeEEEEcCCCcEEEEECCCCeE--EEEE------c---ceecceEEEEEECCCCCEEEEe
Q 020454 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCF------I---GKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 262 ~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~--~~~~------~---~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
++++|||+| ++.|..||.+++|+...++. ..++ . +| ...|.+|.|.+++.++++=
T Consensus 166 s~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 166 TSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEEE
T ss_pred eEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeEEEEE
Confidence 999999999 77899999999999988776 5566 2 35 7789999999999888763
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=3.1e-11 Score=100.19 Aligned_cols=245 Identities=15% Similarity=0.079 Sum_probs=152.6
Q ss_pred eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEeccccceeeeeccc
Q 020454 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
..++...+|.|.+||..++ ++..++..... ...+.+... + .++++. .++.|.+||..++++...+..-
T Consensus 56 lyv~~~~~~~v~viD~~t~-----~~~~~i~~~~~---p~~i~~~~~--g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g 124 (328)
T 3dsm_A 56 GWIVVNNSHVIFAIDINTF-----KEVGRITGFTS---PRYIHFLSD--E-KAYVTQIWDYRIFIINPKTYEITGYIECP 124 (328)
T ss_dssp EEEEEGGGTEEEEEETTTC-----CEEEEEECCSS---EEEEEEEET--T-EEEEEEBSCSEEEEEETTTTEEEEEEECT
T ss_pred EEEEEcCCCEEEEEECccc-----EEEEEcCCCCC---CcEEEEeCC--C-eEEEEECCCCeEEEEECCCCeEEEEEEcC
Confidence 4455556789999999877 55545532222 223333222 3 355555 7899999999988877666531
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEe--cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT--TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~--~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (326)
.. ........++.+ . ++.++++. .++.|.++|..... .++.... ......+.++|
T Consensus 125 ~~---~~~~~~p~~i~~-~---------~~~lyv~~~~~~~~v~viD~~t~~--------~~~~i~~--g~~p~~i~~~~ 181 (328)
T 3dsm_A 125 DM---DMESGSTEQMVQ-Y---------GKYVYVNCWSYQNRILKIDTETDK--------VVDELTI--GIQPTSLVMDK 181 (328)
T ss_dssp TC---CTTTCBCCCEEE-E---------TTEEEEEECTTCCEEEEEETTTTE--------EEEEEEC--SSCBCCCEECT
T ss_pred Cc---cccCCCcceEEE-E---------CCEEEEEcCCCCCEEEEEECCCCe--------EEEEEEc--CCCccceEEcC
Confidence 10 000113344554 2 34555554 48899999976533 2333333 33456788999
Q ss_pred CCCEEEEecCC----------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454 173 SEKFSLFGGKG----------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (326)
Q Consensus 173 ~~~~l~sg~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw 242 (326)
++++++++..+ +.|.++|..+++....+.... ......++|+| +++.|.++.. .|.+|
T Consensus 182 dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--------g~~p~~la~~~--d~~~lyv~~~--~v~~~ 249 (328)
T 3dsm_A 182 YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--------GDWPSEVQLNG--TRDTLYWINN--DIWRM 249 (328)
T ss_dssp TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--------TCCCEEEEECT--TSCEEEEESS--SEEEE
T ss_pred CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--------CCCceeEEEec--CCCEEEEEcc--EEEEE
Confidence 99877776654 789999999888765543211 12367889988 4446766654 89999
Q ss_pred eCCCCCCceeE-EeecCCceEEEEecCCCCeEE-EE----cCCCcEEEEECCCCeEEEEEcceecceEEEEEE
Q 020454 243 DTSAQRRPVMS-FDFRETPIKAVAEEPDSFNIY-IG----NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (326)
Q Consensus 243 d~~~~~~~~~~-~~~~~~~i~~v~~s~~~~~l~-~g----~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~ 309 (326)
|+.+.+..... +.........++++|++..|+ +. ..++.|.+||.. ++.+.++.. ...-..++|
T Consensus 250 d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~--G~~P~~~~~ 319 (328)
T 3dsm_A 250 PVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV--GIIPGAFCW 319 (328)
T ss_dssp ETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE--EESEEEEEE
T ss_pred ECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe--ccCcceEEE
Confidence 99866321111 111235678999999554454 55 568899999998 998888873 223455555
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.52 E-value=5.1e-11 Score=105.56 Aligned_cols=273 Identities=12% Similarity=0.064 Sum_probs=168.4
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc--ccceeeeec
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL--NGDLRVAIS 92 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~--~~~~~~~~~ 92 (326)
..+++...+|.|.|+|..++ ++..++...... .. ...+++++++++++.|+.|.+||+. +++.+..+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~-----~v~~~i~~g~~p---~~--v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~ 237 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY-----EIKTVLDTGYAV---HI--SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK 237 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC-----CEEEEEECSSCE---EE--EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred eEEEEeCCCCeEEEEECCCC-----eEEEEEeCCCCc---cc--eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence 56778888999999999887 555454432221 12 2335567789999999999999995 666666555
Q ss_pred ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccccccc-----------------------
Q 020454 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAE----------------------- 148 (326)
Q Consensus 93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~----------------------- 148 (326)
. + ....++.+.+-. ++++.+++++ ..++.+.++|....+....
T Consensus 238 ~--------G-~~P~~ia~s~~~----~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 238 I--------G-SEARSIETSKME----GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp C--------C-SEEEEEEECCST----TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred c--------C-CCCceeEEcccc----CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence 2 1 224556654100 0034455544 4568999988654322100
Q ss_pred -c-----------ccceEEEEEccC-----------CCceEEEEEcCCCCEEEEec-CCCeEEEEECCCceeeeeecC-C
Q 020454 149 -S-----------SCSTVKSWNVCA-----------SGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKP-P 203 (326)
Q Consensus 149 -~-----------~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~-~ 203 (326)
+ ..+.+.+++... ......+.|+|++++|+++. .++.|.++|+.+++.+..+.- .
T Consensus 305 ~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg 384 (567)
T 1qks_A 305 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG 384 (567)
T ss_dssp ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred EcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC
Confidence 0 012233333221 22345678999999876654 578999999999987665532 1
Q ss_pred CCCCCCcCCCCceeeeEE-eecCCCcEEEEEe-CCCeEEEEeCCCCC------CceeEEeecCCceEEEEecCCCCeEEE
Q 020454 204 PKNSLGIFTPTWFTSAAF-LSIDDHRKFVAGT-NDHQVRLYDTSAQR------RPVMSFDFRETPIKAVAEEPDSFNIYI 275 (326)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~-~p~~~~~~l~~~~-~dg~v~iwd~~~~~------~~~~~~~~~~~~i~~v~~s~~~~~l~~ 275 (326)
. ..++. ....| +|. .+..+++.. .++.|.++|..+.+ +.+.++......-..+..+|+++++++
T Consensus 385 ~-----~Phpg--~g~~~~~p~-~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 385 Q-----TPHPG--RGANFVHPT-FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV 456 (567)
T ss_dssp S-----SBCCT--TCEEEEETT-TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred c-----CCCCc--cceeeECCC-CCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEE
Confidence 1 11222 12233 442 344555554 46899999988621 346666654333345788999999998
Q ss_pred EcC-------CCcEEEEECCCC-----eE-EEEEc--------ceecceEEEEEECCCCCEEEEe
Q 020454 276 GNG-------SGDLASVDIRTG-----KL-LGCFI--------GKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 276 g~~-------dg~v~iwd~~~~-----~~-~~~~~--------~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
... .+.|.+||+.+. .. ...+. .. ...+..+.|+|+|+.+..+
T Consensus 457 ~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 457 DATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG-QPRVVQGEFNKDGTEVWFS 520 (567)
T ss_dssp ECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS-CCEEEEEEECTTSSEEEEE
T ss_pred ecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC-CcceEeeeECCCCCEEEEE
Confidence 763 459999999876 21 12332 11 3478999999999877665
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.51 E-value=1.1e-10 Score=107.19 Aligned_cols=224 Identities=10% Similarity=-0.022 Sum_probs=146.0
Q ss_pred EeeeCCCCCeEEEEecCC-----cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454 58 SIDDSQNDPLLAVARKNG-----LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (326)
Q Consensus 58 ~~~~~~~~~~l~~g~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~ 132 (326)
...+++++++|+.+..++ .|++||+.+++.+..... . ..+.++.+.+ ++..|+.++.+
T Consensus 129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-------~--~~~~~~~wsp--------Dg~~l~~~~~~ 191 (710)
T 2xdw_A 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-------R--VKFSCMAWTH--------DGKGMFYNAYP 191 (710)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-------E--ECSCCEEECT--------TSSEEEEEECC
T ss_pred EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-------C--cccceEEEEe--------CCCEEEEEEEC
Confidence 345567777888876654 899999998887553221 0 1244566654 55678877776
Q ss_pred Cc----------------EEEEEccccccccccccceEEEEEcc-CCCceEEEEEcCCCCEEEEecC-----CCeEEEEE
Q 020454 133 GK----------------ASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGK-----GVEVNVWD 190 (326)
Q Consensus 133 g~----------------v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~-----d~~i~iwd 190 (326)
+. |++|++..... ....++... +...+..+.++|++++|+.++. +..|.+||
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQS------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGG------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred CccccccccccccCCCCEEEEEECCCCcc------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence 65 88888754321 112333332 2344788999999998887654 57899999
Q ss_pred CCC------ce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC----CCeEEEEeCCCCCC-ceeEEeecC
Q 020454 191 LDK------CE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQRR-PVMSFDFRE 258 (326)
Q Consensus 191 ~~~------~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~----dg~v~iwd~~~~~~-~~~~~~~~~ 258 (326)
+.+ +. ....+..+. ..+.. .|+|. +..|+..+. .+.|.+||+.+... ....+..+.
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~---------~~~~~-~~s~d--g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 333 (710)
T 2xdw_A 266 LQQESNGITGILKWVKLIDNF---------EGEYD-YVTNE--GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH 333 (710)
T ss_dssp GGGSSSSSCSSCCCEEEECSS---------SSCEE-EEEEE--TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred CcccccccCCccceEEeeCCC---------CcEEE-EEecc--CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC
Confidence 976 42 233333222 11222 46663 445555443 33799999886521 134444443
Q ss_pred C--ceEEEEecCCCCeEEEEcCCCc--EEEEECCCCeEEEEEcceecceEEEEEECCCCCEEE
Q 020454 259 T--PIKAVAEEPDSFNIYIGNGSGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (326)
Q Consensus 259 ~--~i~~v~~s~~~~~l~~g~~dg~--v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 317 (326)
. .+..++|++++.++++...++. |.+||+.+++.+..+..+ .+.|..+.++|+++.|+
T Consensus 334 ~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 334 EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEE
T ss_pred CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEE
Confidence 3 6888999877778888888884 667788788888888877 88899999999886554
No 182
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.50 E-value=2.2e-12 Score=117.52 Aligned_cols=149 Identities=17% Similarity=0.024 Sum_probs=105.2
Q ss_pred CCceEEEEEcCCCCEEEEecCC----------CeEEEEECCC------ceeeeeec-CCCCCCCCcCCCCceeeeEEeec
Q 020454 162 SGTIAFSKVDISEKFSLFGGKG----------VEVNVWDLDK------CEKIWTAK-PPPKNSLGIFTPTWFTSAAFLSI 224 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~sg~~d----------~~i~iwd~~~------~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~ 224 (326)
...+..++|+|+|+.|++++.+ ..|.+||+.+ ++.. .+. .+ ...+..++|+|
T Consensus 129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~---------~~~~~~~~~Sp- 197 (662)
T 3azo_A 129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA---------HRFVTGPRLSP- 197 (662)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC---------SSEECCCEECT-
T ss_pred CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecC---------CCcccCceECC-
Confidence 3467889999999999988876 5799999987 4432 222 11 24567789998
Q ss_pred CCCcEEEEEeCC--------CeEEEEeCC-CCC-CceeEEe-ecCCceEEEEecCCCCeEEEEcCCC--cEEEEECCCCe
Q 020454 225 DDHRKFVAGTND--------HQVRLYDTS-AQR-RPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSG--DLASVDIRTGK 291 (326)
Q Consensus 225 ~~~~~l~~~~~d--------g~v~iwd~~-~~~-~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg--~v~iwd~~~~~ 291 (326)
++++|+..+.+ ..|++||+. ++. .....+. .+...+..++|+|||+++++++.++ .|.+||+.+++
T Consensus 198 -DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 198 -DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA 276 (662)
T ss_dssp -TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred -CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence 67788877644 489999998 331 0233333 3467899999999999888888888 67777776776
Q ss_pred EEEEEcceecce--------EEEEEECCCCCEEEEeccCcc
Q 020454 292 LLGCFIGKCSGS--------IRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 292 ~~~~~~~~~~~~--------v~~l~~~p~~~~l~s~s~D~~ 324 (326)
.......+ ... +..++|+|++.++++++. +.
T Consensus 277 ~~~l~~~~-~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~ 315 (662)
T 3azo_A 277 ATQLCRRE-EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA 315 (662)
T ss_dssp EEESSCCS-SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred eeeccccc-ccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence 54433332 222 567899999999998876 54
No 183
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.50 E-value=2.5e-12 Score=109.44 Aligned_cols=228 Identities=6% Similarity=-0.117 Sum_probs=130.9
Q ss_pred eCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeee---eeccccc--------ccccCCCCceEEEE
Q 020454 61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVG---LHLFKRQ--------REESSSRSRTLLTC 129 (326)
Q Consensus 61 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---l~~~~~~--------~~~~~~~~~~l~~~ 129 (326)
+++++++|+..+.++.|.+|++.+++....... +...... +.+.... ...-++++..++..
T Consensus 88 ~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~--------~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~ 159 (396)
T 3c5m_A 88 ISTDERAFFYVKNELNLMKVDLETLEEQVIYTV--------DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFA 159 (396)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC--------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred ECCCCCEEEEEEcCCcEEEEECCCCCcEEEEec--------ccccCCCCCEEEeccCCccccccccccccCCCCcceeee
Confidence 466777899999999999999987775443331 1111111 1110000 00000122222222
Q ss_pred -----ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-CCCEEEEecCC------CeEEEEECCCceee
Q 020454 130 -----TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKG------VEVNVWDLDKCEKI 197 (326)
Q Consensus 130 -----~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d------~~i~iwd~~~~~~~ 197 (326)
..+..|++|++.... ...+. .....+..+.|+| +++.|+..+.+ ..|.+||+..++..
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~--------~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (396)
T 3c5m_A 160 EFYHTNPTCRLIKVDIETGE--------LEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR 229 (396)
T ss_dssp HHHHTCCCEEEEEEETTTCC--------EEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE
T ss_pred eeccCCCcceEEEEECCCCc--------EEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee
Confidence 234566777754322 11122 2345688899999 77766654433 46888888755432
Q ss_pred eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----CeEEEEeCCCCCCceeEEeecCCceEEEEecC-CCC
Q 020454 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSF 271 (326)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~-~~~ 271 (326)
.... +. ....+..+.|+| +++.|+..+.+ +.|++||+.++ + ...+..... .. +.|+| +|+
T Consensus 230 ~l~~-~~-------~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~l~~~d~~~g-~-~~~l~~~~~-~~-~~~s~~dg~ 295 (396)
T 3c5m_A 230 KIKE-HA-------EGESCTHEFWIP--DGSAMAYVSYFKGQTDRVIYKANPETL-E-NEEVMVMPP-CS-HLMSNFDGS 295 (396)
T ss_dssp ESSC-CC-------TTEEEEEEEECT--TSSCEEEEEEETTTCCEEEEEECTTTC-C-EEEEEECCS-EE-EEEECSSSS
T ss_pred Eeec-cC-------CCccccceEECC--CCCEEEEEecCCCCccceEEEEECCCC-C-eEEeeeCCC-CC-CCccCCCCc
Confidence 2111 10 012467789998 55566665443 45999999876 3 223322222 33 89999 999
Q ss_pred eEEEEc----------------CCCcEEEEECCCCeEEEEEcceecc-----------eEEEEEECCCCCEEEEeccC
Q 020454 272 NIYIGN----------------GSGDLASVDIRTGKLLGCFIGKCSG-----------SIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 272 ~l~~g~----------------~dg~v~iwd~~~~~~~~~~~~~~~~-----------~v~~l~~~p~~~~l~s~s~D 322 (326)
+++.++ .++.|++||+.+++.. .+..+ .. .+..++|+|+++.|+.++.+
T Consensus 296 ~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~ 371 (396)
T 3c5m_A 296 LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH-STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF 371 (396)
T ss_dssp EEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC-CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred eEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC-CCccccccccccCCCCCceEccCCCeEEEEecC
Confidence 888654 3468999999887653 34433 33 25678999999988877653
No 184
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.50 E-value=7.2e-10 Score=90.32 Aligned_cols=255 Identities=8% Similarity=0.027 Sum_probs=155.8
Q ss_pred eeeeecC-cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 16 RALTFDS-LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 16 ~l~~~~~-~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
++..++. ++.|.+|+.. + ++. .+..+........+.++ +++.++++...++.|..|+.. ++. ..+...
T Consensus 27 ~l~v~~~~~~~v~~~d~~-~-----~~~-~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~ 95 (299)
T 2z2n_A 27 KVWITQHKANMISCINLD-G-----KIT-EYPLPTPDAKVMCLTIS--SDGEVWFTENAANKIGRITKK-GII-KEYTLP 95 (299)
T ss_dssp CEEEEETTTTEEEEECTT-C-----CEE-EEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECTT-SCE-EEEECS
T ss_pred CEEEEecCCCcEEEEcCC-C-----CeE-EecCCcccCceeeEEEC--CCCCEEEeCCCCCeEEEECCC-CcE-EEEeCC
Confidence 3444443 5677777766 3 221 22212122334444443 345555555668899999985 443 222210
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc-CCCceEEEEEcCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDIS 173 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 173 (326)
.....+.++...+ ++..+++...++.|..++... .+..+... ....+..+.++++
T Consensus 96 ------~~~~~~~~i~~~~--------~g~l~v~~~~~~~i~~~d~~g----------~~~~~~~~~~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 96 ------NPDSAPYGITEGP--------NGDIWFTEMNGNRIGRITDDG----------KIREYELPNKGSYPSFITLGSD 151 (299)
T ss_dssp ------STTCCEEEEEECT--------TSCEEEEETTTTEEEEECTTC----------CEEEEECSSTTCCEEEEEECTT
T ss_pred ------CcCCCceeeEECC--------CCCEEEEecCCceEEEECCCC----------CEEEecCCCCCCCCceEEEcCC
Confidence 1224566676533 334445555678888887521 22233222 3456889999999
Q ss_pred CCEEEEecCCCeEEEEECCCceeeee-ecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 252 (326)
+++.++...++.|..||. +++.... ... ....+.++++.+ +++++++...++.|.+||. ++ . +.
T Consensus 152 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~---------~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~-~g-~-~~ 216 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITE-SGDITEFKIPT---------PASGPVGITKGN--DDALWFVEIIGNKIGRITT-SG-E-IT 216 (299)
T ss_dssp SCEEEEETTTTEEEEECT-TCCEEEEECSS---------TTCCEEEEEECT--TSSEEEEETTTTEEEEECT-TC-C-EE
T ss_pred CCEEEEeCCCCEEEEEcC-CCcEEEeeCCC---------CCCcceeEEECC--CCCEEEEccCCceEEEECC-CC-c-EE
Confidence 988887777889999998 5554322 111 113466888876 4657666667889999999 55 3 33
Q ss_pred EEe--ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE-EcceecceEEEEEECCCCCEEEEeccCc
Q 020454 253 SFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 253 ~~~--~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
.+. .....+..++++++|+..++...++.|..||. +++.... +..+ ...+.++++ +++.+.++.+.++
T Consensus 217 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-~~~~~~i~~-~~g~l~v~~~~~~ 287 (299)
T 2z2n_A 217 EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIK-SAEPHGICF-DGETIWFAMECDK 287 (299)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSS-SCCEEEEEE-CSSCEEEEETTTE
T ss_pred EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCC-CCccceEEe-cCCCEEEEecCCc
Confidence 332 23467899999999986666667889999998 4553322 2343 567899999 9888877765444
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.46 E-value=1.1e-10 Score=103.51 Aligned_cols=206 Identities=11% Similarity=0.073 Sum_probs=140.4
Q ss_pred CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc
Q 020454 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (326)
Q Consensus 66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~ 145 (326)
.++++...+++|.++|..+++.+..+.. . ..+.++.+.+ ++.++++++.++.|.+||+....
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~-------g--~~p~~v~~Sp--------DGr~lyv~~~dg~V~viD~~~~t- 229 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDT-------G--YAVHISRLSA--------SGRYLFVIGRDGKVNMIDLWMKE- 229 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEEC-------S--SCEEEEEECT--------TSCEEEEEETTSEEEEEETTSSS-
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeC-------C--CCccceEECC--------CCCEEEEEcCCCeEEEEECCCCC-
Confidence 3566777889999999999998877764 1 2344566544 56788889999999999974111
Q ss_pred ccccccceEEEEEccCCCceEEEEEc----CCCCEEEEecC-CCeEEEEECCCceeeeeecCCCC--CCCCcCCCCceee
Q 020454 146 SAESSCSTVKSWNVCASGTIAFSKVD----ISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPK--NSLGIFTPTWFTS 218 (326)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~v~~ 218 (326)
...+.... .......++++ |+|++++++.. ++.|.++|..+.+.+..+..... +.........+..
T Consensus 230 -----~~~v~~i~--~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 230 -----PTTVAEIK--IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp -----CCEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred -----CcEeEEEe--cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence 01233222 35567899999 69998877665 48999999999888776543211 1000001124667
Q ss_pred eEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc-eeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeEEEEE
Q 020454 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP-VMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCF 296 (326)
Q Consensus 219 ~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~~~~~ 296 (326)
+.+++. ....++.....|.|.++|....+.. +..+ ........+.|+|+|+++++++ .++.|.++|+.+++++..+
T Consensus 303 i~~s~~-~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 303 ILASHY-RPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp EEECSS-SSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEEcCC-CCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence 777764 3446666777899999998764221 2222 2334567889999999987655 6789999999999988766
Q ss_pred cc
Q 020454 297 IG 298 (326)
Q Consensus 297 ~~ 298 (326)
..
T Consensus 381 ~v 382 (567)
T 1qks_A 381 DT 382 (567)
T ss_dssp EC
T ss_pred ec
Confidence 53
No 186
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.45 E-value=1.5e-10 Score=96.15 Aligned_cols=152 Identities=11% Similarity=-0.011 Sum_probs=105.4
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CCCeE
Q 020454 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQV 239 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~dg~v 239 (326)
-.....++++++++++++...++.|++||..... .+..+..................+++.|. +++++++.+ .++.|
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNSRI 168 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCCEE
T ss_pred cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCCeE
Confidence 3468899999999999998889999999986542 33333211100000111235779999873 455777776 69999
Q ss_pred EEEeCCCCCCceeEEeecC----------CceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEc--ceecceEEE
Q 020454 240 RLYDTSAQRRPVMSFDFRE----------TPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFI--GKCSGSIRS 306 (326)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~----------~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~--~~~~~~v~~ 306 (326)
++||.. + ..+..+.... .....++++|+ ++++++...++.|++||..+++.+..+. .+ ...+.+
T Consensus 169 ~~~~~~-g-~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~-~~~~~~ 245 (329)
T 3fvz_A 169 VQFSPS-G-KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF-GRNVFA 245 (329)
T ss_dssp EEECTT-S-CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT-TTCEEE
T ss_pred EEEcCC-C-CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc-CCCcce
Confidence 999954 4 3455553222 23789999998 6667777788999999999899988874 34 567889
Q ss_pred EEECCCCCEEEE
Q 020454 307 IARHPTLPIIAS 318 (326)
Q Consensus 307 l~~~p~~~~l~s 318 (326)
++|+| +..+++
T Consensus 246 ~~~~p-g~~~~~ 256 (329)
T 3fvz_A 246 ISYIP-GFLFAV 256 (329)
T ss_dssp EEEET-TEEEEE
T ss_pred eeecC-CEEEEe
Confidence 99999 434433
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.44 E-value=8.4e-10 Score=89.90 Aligned_cols=219 Identities=7% Similarity=0.041 Sum_probs=141.3
Q ss_pred CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (326)
Q Consensus 63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~ 142 (326)
+++.++++...++.|.+||.. ++.. .+... .....+.++...+ ++..+++...++.|..|+.+
T Consensus 24 ~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~------~~~~~~~~i~~~~--------~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 24 DKGKVWITQHKANMISCINLD-GKIT-EYPLP------TPDAKVMCLTISS--------DGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp TTSCEEEEETTTTEEEEECTT-CCEE-EEECS------STTCCEEEEEECT--------TSCEEEEETTTTEEEEECTT-
T ss_pred CCCCEEEEecCCCcEEEEcCC-CCeE-EecCC------cccCceeeEEECC--------CCCEEEeCCCCCeEEEECCC-
Confidence 344455555557899999987 5543 22210 1224566676533 33444554557888888753
Q ss_pred cccccccccceEEEEEcc-CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454 143 TKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (326)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (326)
+.+..+... ....+..+.++++++++++...++.|..||. +++........ ....+..+++
T Consensus 87 ---------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~--------~~~~~~~i~~ 148 (299)
T 2z2n_A 87 ---------GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN--------KGSYPSFITL 148 (299)
T ss_dssp ---------SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS--------TTCCEEEEEE
T ss_pred ---------CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC--------CCCCCceEEE
Confidence 123334432 3457889999999998888777889999998 44433221110 1134678888
Q ss_pred eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE--eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE-Ecc
Q 020454 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FIG 298 (326)
Q Consensus 222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~-~~~ 298 (326)
.+ +++++++...++.|..||. ++ + +..+ ......+..++++++|+..++...++.|.+||. +++.... ...
T Consensus 149 ~~--~g~l~v~~~~~~~i~~~~~-~g-~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~ 222 (299)
T 2z2n_A 149 GS--DNALWFTENQNNAIGRITE-SG-D-ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPT 222 (299)
T ss_dssp CT--TSCEEEEETTTTEEEEECT-TC-C-EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred cC--CCCEEEEeCCCCEEEEEcC-CC-c-EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCC
Confidence 76 4557777777889999998 44 3 3333 223456889999999987777667889999999 6664432 233
Q ss_pred eecceEEEEEECCCCCEEEEeccCc
Q 020454 299 KCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 299 ~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
+ ...+.++++++++.+.++...++
T Consensus 223 ~-~~~~~~i~~~~~g~l~v~~~~~~ 246 (299)
T 2z2n_A 223 P-NARPHAITAGAGIDLWFTEWGAN 246 (299)
T ss_dssp T-TCCEEEEEECSTTCEEEEETTTT
T ss_pred C-CCCceeEEECCCCCEEEeccCCc
Confidence 3 46789999999998777654433
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.44 E-value=7.6e-11 Score=98.47 Aligned_cols=212 Identities=10% Similarity=0.030 Sum_probs=128.7
Q ss_pred eeeCCCCCeEEEEecC---C--cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC-
Q 020454 59 IDDSQNDPLLAVARKN---G--LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK- 132 (326)
Q Consensus 59 ~~~~~~~~~l~~g~~d---g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~- 132 (326)
..+++++++|+..+.+ + .|.+|++.+++....... + . +..+.+.+ ++..|+.++.+
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--------~-~-~~~~~wsp--------dg~~l~~~~~~~ 125 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--------K-N-IRSLEWNE--------DSRKLLIVGFKR 125 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--------S-E-EEEEEECT--------TSSEEEEEEECC
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--------C-C-ccceeECC--------CCCEEEEEEccC
Confidence 3456677778877654 3 377778877765443332 1 2 66666644 45567666532
Q ss_pred --------------------------CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCC--
Q 020454 133 --------------------------GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV-- 184 (326)
Q Consensus 133 --------------------------g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~-- 184 (326)
..|++|++.... .++.+.. . .+..+.|+|++ +++++..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--------~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~ 193 (347)
T 2gop_A 126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--------VIEEFEK--P-RFSSGIWHRDK-IVVNVPHREII 193 (347)
T ss_dssp CC---------CCCC---------CEEEEEEEETTTTE--------EEEEEEE--E-TTCEEEEETTE-EEEEEECCCSS
T ss_pred CCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--------EEeeecC--C-CcccccCCCCe-EEEEEeccccc
Confidence 456666654322 1122222 2 67788999999 777775542
Q ss_pred -----eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC--------CeEEEEeCCCCCCce
Q 020454 185 -----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--------HQVRLYDTSAQRRPV 251 (326)
Q Consensus 185 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d--------g~v~iwd~~~~~~~~ 251 (326)
...||.+.+++.. .+..+ ..+.. ++| +++.|+..+.+ ..|.+|| ++ +..
T Consensus 194 ~~~~~~~~l~~~d~~~~~-~l~~~----------~~~~~--~sp--dg~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~~ 255 (347)
T 2gop_A 194 PQYFKFWDIYIWEDGKEE-KMFEK----------VSFYA--VDS--DGERILLYGKPEKKYMSEHNKLYIYD--GK-EVM 255 (347)
T ss_dssp CCSSCCEEEEEEETTEEE-EEEEE----------ESEEE--EEE--CSSCEEEEECCSSSCCCSSCEEEEEC--SS-CEE
T ss_pred ccccccccEEEeCCCceE-EeccC----------cceee--ECC--CCCEEEEEEccccCCccccceEEEEC--CC-ceE
Confidence 3344443344332 22111 11222 366 66677766643 4788888 33 322
Q ss_pred eEEeecCCceEE-EEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 252 MSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 252 ~~~~~~~~~i~~-v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.....+...+.. +.|+ ++ ++++++.++.+++| +.+++... +..+ .+.|.+++|+| .++++++.++..
T Consensus 256 ~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~-~~~v~~~~~s~--~~~~~~~~~~~~ 323 (347)
T 2gop_A 256 GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKG-RHWIMGFDVDE--IVVYLKETATRL 323 (347)
T ss_dssp ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECS-SSEEEEEEESS--SEEEEEECSSSC
T ss_pred eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecC-CCeEEeeeeeC--cEEEEEcCCCCh
Confidence 222344567776 8999 88 88899999999999 87666543 4444 77899999999 678887777653
No 189
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.42 E-value=5.9e-11 Score=100.71 Aligned_cols=179 Identities=9% Similarity=0.033 Sum_probs=116.7
Q ss_pred CCceEEEEec-CCc--EEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeee
Q 020454 122 RSRTLLTCTT-KGK--ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (326)
Q Consensus 122 ~~~~l~~~~~-~g~--v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~ 198 (326)
++..|+..+. +|. |.+|++.... ...+. ..+...+....|+|+++.|+.++.++.|.+||+.+++...
T Consensus 46 Dg~~l~~~~~~~g~~~l~~~d~~~g~--------~~~lt-~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~ 116 (388)
T 3pe7_A 46 DGSKLLFGGAFDGPWNYYLLDLNTQV--------ATQLT-EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV 116 (388)
T ss_dssp TSCEEEEEECTTSSCEEEEEETTTCE--------EEECC-CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred CCCEEEEEEcCCCCceEEEEeCCCCc--------eEEee-eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence 5667777776 674 5666654322 11111 1122233456799999999999999999999999887654
Q ss_pred eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE----------------------eCCCeEEEEeCCCCCCceeEEee
Q 020454 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG----------------------TNDHQVRLYDTSAQRRPVMSFDF 256 (326)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~----------------------~~dg~v~iwd~~~~~~~~~~~~~ 256 (326)
....+. .++....|..+.++.+++.. ..+..|.+||+.++ + ...+..
T Consensus 117 ~~~~~~---------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~-~~~l~~ 185 (388)
T 3pe7_A 117 VYQVPA---------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-E-STVILQ 185 (388)
T ss_dssp EEECCT---------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-C-EEEEEE
T ss_pred eeechh---------hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-c-eEEeec
Confidence 433321 23434444333466666532 24578999999976 3 455556
Q ss_pred cCCceEEEEecC-CCCeEEEEcCC------CcEEEEECCCCeEEEEEcceec-ceEEEEEECCCCCEEEEecc
Q 020454 257 RETPIKAVAEEP-DSFNIYIGNGS------GDLASVDIRTGKLLGCFIGKCS-GSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 257 ~~~~i~~v~~s~-~~~~l~~g~~d------g~v~iwd~~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~s~s~ 321 (326)
+...+..++|+| +|+.|+....+ ..|.++|...++.. .+..+.. ..+..++|+|+++.|+..+.
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 186 ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEec
Confidence 667789999999 99988866553 37888888765443 3333312 36888999999998766554
No 190
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=1.3e-10 Score=95.67 Aligned_cols=222 Identities=10% Similarity=0.010 Sum_probs=138.2
Q ss_pred CCCCeEEE-------EecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcE
Q 020454 63 QNDPLLAV-------ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA 135 (326)
Q Consensus 63 ~~~~~l~~-------g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v 135 (326)
.++.++++ +..++.|.+|+..+++....... ........+.++.+.+ +.+.++.+...+.|
T Consensus 27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----~~~~~~~~~~~i~~~~--------~~g~l~v~~~~~~l 94 (314)
T 1pjx_A 27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP----EVNGYGGIPAGCQCDR--------DANQLFVADMRLGL 94 (314)
T ss_dssp TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC----EETTEECCEEEEEECS--------SSSEEEEEETTTEE
T ss_pred CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec----ccCCCCCCCceEEEec--------CCCcEEEEECCCCE
Confidence 44445555 47789999999877776322110 0001124566676533 21566666666678
Q ss_pred EEEEccccccccccccceEEEE--Ec---cCCCceEEEEEcCCCCEEEEecCC---------------CeEEEEECCCce
Q 020454 136 SMRSIEVTKVSAESSCSTVKSW--NV---CASGTIAFSKVDISEKFSLFGGKG---------------VEVNVWDLDKCE 195 (326)
Q Consensus 136 ~i~~~~~~~~~~~~~~~~~~~~--~~---~~~~~v~~~~~~~~~~~l~sg~~d---------------~~i~iwd~~~~~ 195 (326)
.+|+.+ .. +..+ .. .....+..+++++++++.++...+ +.|..||.. ++
T Consensus 95 ~~~d~~-g~---------~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~ 163 (314)
T 1pjx_A 95 LVVQTD-GT---------FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ 163 (314)
T ss_dssp EEEETT-SC---------EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC
T ss_pred EEEeCC-CC---------EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC
Confidence 888865 22 1111 10 112347899999999888776554 567777765 43
Q ss_pred eeeeecCCCCCCCCcCCCCceeeeEEe----ecCCCcE-EEEEeCCCeEEEEeCC-CCCC----ceeEEeecC-CceEEE
Q 020454 196 KIWTAKPPPKNSLGIFTPTWFTSAAFL----SIDDHRK-FVAGTNDHQVRLYDTS-AQRR----PVMSFDFRE-TPIKAV 264 (326)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~~-l~~~~~dg~v~iwd~~-~~~~----~~~~~~~~~-~~i~~v 264 (326)
....... ......++++ | +++. +++...++.|.+||+. .+.. ....+..+. .....+
T Consensus 164 ~~~~~~~----------~~~~~~i~~~~~~d~--dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i 231 (314)
T 1pjx_A 164 MIQVDTA----------FQFPNGIAVRHMNDG--RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEEEEEE----------ESSEEEEEEEECTTS--CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred EEEeccC----------CCCcceEEEecccCC--CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence 3222111 0235677888 6 4534 4555678999999976 2210 111222222 557889
Q ss_pred EecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454 265 AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 265 ~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
+++++|+++++...++.|.+||..+++.+..+..+ ...+.+++|+|+++.|+.++
T Consensus 232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEE
T ss_pred EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC-CCCceeEEECCCCCEEEEEe
Confidence 99999988887778889999999878777777665 67899999999998555443
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.41 E-value=4.2e-09 Score=85.76 Aligned_cols=248 Identities=8% Similarity=0.043 Sum_probs=150.2
Q ss_pred CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCC
Q 020454 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP 101 (326)
Q Consensus 22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 101 (326)
.++.|.+|+.. + ++. .+..+........+..+ .++.+.++...++.|..||.. ++.. .+... .
T Consensus 39 ~~~~v~~~~~~-~-----~~~-~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~------~ 101 (300)
T 2qc5_A 39 KANKISSLDQS-G-----RIK-EFEVPTPDAKVMCLIVS--SLGDIWFTENGANKIGKLSKK-GGFT-EYPLP------Q 101 (300)
T ss_dssp TTTEEEEECTT-S-----CEE-EEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECTT-SCEE-EEECS------S
T ss_pred CCCeEEEECCC-C-----ceE-EEECCCCCCcceeEEEC--CCCCEEEEecCCCeEEEECCC-CCeE-EecCC------C
Confidence 45667777765 3 221 12222222333444443 445555555557889999986 6653 23210 1
Q ss_pred CCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc-CCCceEEEEEcCCCCEEEEe
Q 020454 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFG 180 (326)
Q Consensus 102 ~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg 180 (326)
....+.++...+ ++..+++...++.|..++.+ +.+..+... ....+..+.+++++++.++.
T Consensus 102 ~~~~~~~i~~~~--------~g~l~v~~~~~~~i~~~~~~----------g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 163 (300)
T 2qc5_A 102 PDSGPYGITEGL--------NGDIWFTQLNGDRIGKLTAD----------GTIYEYDLPNKGSYPAFITLGSDNALWFTE 163 (300)
T ss_dssp TTCCEEEEEECS--------TTCEEEEETTTTEEEEECTT----------SCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred CCCCCccceECC--------CCCEEEEccCCCeEEEECCC----------CCEEEccCCCCCCCceeEEECCCCCEEEEe
Confidence 224566676533 33445555557788877754 123333332 34568899999999977776
Q ss_pred cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE--eecC
Q 020454 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRE 258 (326)
Q Consensus 181 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~ 258 (326)
..++.|..||. +++.... .... ....+.++++.+ +++++++....+.|.+||.. + . ...+ ....
T Consensus 164 ~~~~~i~~~~~-~g~~~~~-~~~~-------~~~~~~~i~~d~--~g~l~v~~~~~~~i~~~~~~-g-~-~~~~~~~~~~ 229 (300)
T 2qc5_A 164 NQNNSIGRITN-TGKLEEY-PLPT-------NAAAPVGITSGN--DGALWFVEIMGNKIGRITTT-G-E-ISEYDIPTPN 229 (300)
T ss_dssp TTTTEEEEECT-TCCEEEE-ECSS-------TTCCEEEEEECT--TSSEEEEETTTTEEEEECTT-C-C-EEEEECSSTT
T ss_pred cCCCeEEEECC-CCcEEEe-eCCC-------CCCCcceEEECC--CCCEEEEccCCCEEEEEcCC-C-c-EEEEECCCCC
Confidence 66789999998 4443321 1100 113467888876 55566666667889999983 3 2 2233 2234
Q ss_pred CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEE-EEcceecceEEEEEECCCCCEEEEec
Q 020454 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG-CFIGKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 259 ~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~-~~~~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
..+..++++++|+..++...++.|..||. +++... .+... ...+.++++++++.+.++..
T Consensus 230 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 230 ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTE-NAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCST-TCCCCCEEECTTSCEEEECS
T ss_pred CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCcc-CCccceeEeCCCCCEEEEcc
Confidence 56889999999986666666789999998 454432 23323 45688999999998766654
No 192
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.39 E-value=5.4e-10 Score=91.32 Aligned_cols=214 Identities=11% Similarity=0.007 Sum_probs=135.4
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
+.++++...++.|..||..+++. ..+.. ...+.++.+.+ ++ .++++. ++.|.+|+.+...
T Consensus 25 ~~l~~~d~~~~~i~~~d~~~~~~-~~~~~---------~~~~~~i~~~~--------dG-~l~v~~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 25 NSLLFVDIPAKKVCRWDSFTKQV-QRVTM---------DAPVSSVALRQ--------SG-GYVATI-GTKFCALNWKEQS 84 (297)
T ss_dssp TEEEEEETTTTEEEEEETTTCCE-EEEEC---------SSCEEEEEEBT--------TS-SEEEEE-TTEEEEEETTTTE
T ss_pred CEEEEEECCCCEEEEEECCCCcE-EEEeC---------CCceEEEEECC--------CC-CEEEEE-CCeEEEEECCCCc
Confidence 44677777889999999977665 22221 14567777543 33 355555 5678888865322
Q ss_pred cccccccceEEE-EEcc---CCCceEEEEEcCCCCEEEEecC---------CCeEEEEECCC-ceeeeeecCCCCCCCCc
Q 020454 145 VSAESSCSTVKS-WNVC---ASGTIAFSKVDISEKFSLFGGK---------GVEVNVWDLDK-CEKIWTAKPPPKNSLGI 210 (326)
Q Consensus 145 ~~~~~~~~~~~~-~~~~---~~~~v~~~~~~~~~~~l~sg~~---------d~~i~iwd~~~-~~~~~~~~~~~~~~~~~ 210 (326)
++. .... ....+..+.++|+|++.++... ...-.+|.+.. ++.......
T Consensus 85 ---------~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~-------- 147 (297)
T 3g4e_A 85 ---------AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ-------- 147 (297)
T ss_dssp ---------EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE--------
T ss_pred ---------EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec--------
Confidence 222 2211 1234788999999997665422 12234444432 222111111
Q ss_pred CCCCceeeeEEeecCCCc-EEEEEeCCCeEEEEeCC--CCCCc-----eeEEeecCCceEEEEecCCCCeEEEEcCCCcE
Q 020454 211 FTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTS--AQRRP-----VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (326)
Q Consensus 211 ~~~~~v~~~~~~p~~~~~-~l~~~~~dg~v~iwd~~--~~~~~-----~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v 282 (326)
......++|+| +++ ++++.+.++.|.+||+. ++ .. +..+.........++++++|++.++....+.|
T Consensus 148 --~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G-~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v 222 (297)
T 3g4e_A 148 --VDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTG-QISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRV 222 (297)
T ss_dssp --ESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTC-CEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred --cccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCC-cccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence 12356889988 444 44666778999999873 33 21 11222233567889999999877777777889
Q ss_pred EEEECCCCeEEEEEcceecceEEEEEEC-CCCCEEEEecc
Q 020454 283 ASVDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCGF 321 (326)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~-p~~~~l~s~s~ 321 (326)
..||..+++.+..+..+ ...+++++|. |+++.|+.++.
T Consensus 223 ~~~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 223 IRLDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEcC
Confidence 99999999999888876 6789999998 88776554443
No 193
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.38 E-value=2e-09 Score=91.06 Aligned_cols=263 Identities=10% Similarity=0.053 Sum_probs=148.3
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCC-------CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS-------SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL 87 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 87 (326)
-++.+++.+|.|..+|..++ +..-++..... ...+. ..... .+..+++++.++.|..+|..+++.
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG-----~~~W~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDG-----KEIWSVSLAEKDGWFSKEPALLS-GGVTV--SGGHVYIGSEKAQVYALNTSDGTV 125 (376)
T ss_dssp TEEEEECTTSEEEEEETTTC-----CEEEEEECCC---CCSCCCCCEE-EEEEE--ETTEEEEEETTSEEEEEETTTCCE
T ss_pred CEEEEEcCCCeEEEEEccCC-----ceeeeecCccccccccccCcccc-cCceE--eCCEEEEEcCCCEEEEEECCCCCE
Confidence 56888888999999999877 34222221111 11111 11111 233688899999999999999988
Q ss_pred eeeecccCCCCCCCCCCCeee-eecccccccccCCCCceEEEEecCCcEEEEEcccccc---------------------
Q 020454 88 RVAISNAGDSGAQPEDDGIVG-LHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--------------------- 145 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~-l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~--------------------- 145 (326)
+...... ..+.. ... .++.+++++.++.+..+|......
T Consensus 126 ~W~~~~~---------~~~~~~p~~----------~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~ 186 (376)
T 3q7m_A 126 AWQTKVA---------GEALSRPVV----------SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT 186 (376)
T ss_dssp EEEEECS---------SCCCSCCEE----------ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE
T ss_pred EEEEeCC---------CceEcCCEE----------ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE
Confidence 7665531 11111 111 235677777777777777543221
Q ss_pred -----ccccccceEEEEEccCCCceEEEEE-----------------cC--CCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454 146 -----SAESSCSTVKSWNVCASGTIAFSKV-----------------DI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (326)
Q Consensus 146 -----~~~~~~~~~~~~~~~~~~~v~~~~~-----------------~~--~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 201 (326)
..+..++.+..++......+..... .| .+..++.++.++.+..+|.++++.++...
T Consensus 187 ~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~ 266 (376)
T 3q7m_A 187 AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE 266 (376)
T ss_dssp ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc
Confidence 0011223333444333222222211 11 13445555666677777776666665543
Q ss_pred CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee-cCCceEEEEecCCCCeEEEEcCCC
Q 020454 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSG 280 (326)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg 280 (326)
.. ....+.. ++..++.++.++.+..+|..++ +.+..... ....+..... .+..|++++.+|
T Consensus 267 ~~-----------~~~~~~~----~~~~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g 328 (376)
T 3q7m_A 267 LG-----------SVNDFIV----DGNRIYLVDQNDRVMALTIDGG-VTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEG 328 (376)
T ss_dssp CC-----------CEEEEEE----ETTEEEEEETTCCEEEEETTTC-CEEEEECTTTTSCCCCCEE--ETTEEEEECTTS
T ss_pred CC-----------CCCCceE----ECCEEEEEcCCCeEEEEECCCC-cEEEeecccCCCcccCCEE--ECCEEEEEeCCC
Confidence 21 1122222 2337778888999999999887 44555441 2222222233 356899999999
Q ss_pred cEEEEECCCCeEEEEEcceecceEEE-EEECCCCCEEEEeccCccC
Q 020454 281 DLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 281 ~v~iwd~~~~~~~~~~~~~~~~~v~~-l~~~p~~~~l~s~s~D~~~ 325 (326)
.++++|.++++.+.++... ...+.+ ... .+..|+.++.||.+
T Consensus 329 ~l~~~d~~tG~~~~~~~~~-~~~~~~~~~~--~~~~l~v~~~~G~l 371 (376)
T 3q7m_A 329 YLHWINVEDGRFVAQQKVD-SSGFQTEPVA--ADGKLLIQAKDGTV 371 (376)
T ss_dssp EEEEEETTTCCEEEEEECC-TTCBCSCCEE--ETTEEEEEBTTSCE
T ss_pred eEEEEECCCCcEEEEEecC-CCcceeCCEE--ECCEEEEEeCCCEE
Confidence 9999999999998877653 333332 222 24467777777753
No 194
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.37 E-value=3.1e-11 Score=102.57 Aligned_cols=219 Identities=10% Similarity=0.007 Sum_probs=130.5
Q ss_pred eCCCCCeEEEEecC---CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEE
Q 020454 61 DSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM 137 (326)
Q Consensus 61 ~~~~~~~l~~g~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i 137 (326)
.++++++|+..... ..|.+||+.+++...... ..........+.+ ++..|+..+.++.+++
T Consensus 43 ~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~~~sp--------dg~~l~~~~~~~~l~~ 106 (396)
T 3c5m_A 43 FTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE--------GKGDNTFGGFIST--------DERAFFYVKNELNLMK 106 (396)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC--------SSCBCTTTCEECT--------TSSEEEEEETTTEEEE
T ss_pred CCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec--------CCCCccccceECC--------CCCEEEEEEcCCcEEE
Confidence 45566677766543 368888987776533221 1111111133333 5667888888889999
Q ss_pred EEccccccccccccceEEEEEccCCCceEE-------------------EEEcCCCCEEEEe-----cCCCeEEEEECCC
Q 020454 138 RSIEVTKVSAESSCSTVKSWNVCASGTIAF-------------------SKVDISEKFSLFG-----GKGVEVNVWDLDK 193 (326)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~sg-----~~d~~i~iwd~~~ 193 (326)
|++..... ..+..... ..... ..++|+++.++.. ..+..|.+||+.+
T Consensus 107 ~d~~~~~~--------~~~~~~~~-~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~ 177 (396)
T 3c5m_A 107 VDLETLEE--------QVIYTVDE-EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET 177 (396)
T ss_dssp EETTTCCE--------EEEEECCT-TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT
T ss_pred EECCCCCc--------EEEEeccc-ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC
Confidence 99764331 11222111 11111 3467777776654 4567899999988
Q ss_pred ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC------CeEEEEeCCCCCCceeEEeec--CCceEEEE
Q 020454 194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRLYDTSAQRRPVMSFDFR--ETPIKAVA 265 (326)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~--~~~i~~v~ 265 (326)
++...... ....+..+.|+|. ++..|+..+.+ ..|.+||+... . ...+..+ ...+..++
T Consensus 178 g~~~~~~~----------~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 178 GELEVIHQ----------DTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGS-N-VRKIKEHAEGESCTHEF 244 (396)
T ss_dssp CCEEEEEE----------ESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSC-C-CEESSCCCTTEEEEEEE
T ss_pred CcEEeecc----------CCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCC-c-eeEeeccCCCccccceE
Confidence 76544321 1234778899983 23456555443 46888898754 2 2333222 23578889
Q ss_pred ecCCCCeEEEEcCC-----CcEEEEECCCCeEEEEEcceecceEEEEEECC-CCCEEEEecc
Q 020454 266 EEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGF 321 (326)
Q Consensus 266 ~s~~~~~l~~g~~d-----g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~s~s~ 321 (326)
|+|+|++|+..+.+ +.|++||+.+++....... . ... +.|+| ++++|+.++.
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~-~~~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM--P-PCS-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC--C-SEE-EEEECSSSSEEEEEEC
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC--C-CCC-CCccCCCCceEEEecC
Confidence 99999988766543 4499999998875443221 1 122 88999 9998887653
No 195
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.37 E-value=5.5e-13 Score=112.53 Aligned_cols=203 Identities=15% Similarity=0.168 Sum_probs=112.0
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
+..+++++.||.|..||..+|+.+..+.. +.+.+..... ++..+++++.||.++.||....+
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----------~~~~s~p~~~--------~g~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE----------DPVLQVPTHV--------EEPAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC----------CCSCCCC-------------CCEEECTTTCCEEEC-----C
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC----------CCceecceEc--------CCCEEEEeCCCCEEEEEECCCCc
Confidence 45799999999999999999998777653 2222222222 33466667899999999975432
Q ss_pred cccccccceEEEEEccCCCceEE-EEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454 145 VSAESSCSTVKSWNVCASGTIAF-SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 223 (326)
.+..|.......+.+ ..+. .+..+++|+.|+.|..||.++++.++....+. ...++|
T Consensus 71 --------~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-------------~~~~~p 128 (369)
T 2hz6_A 71 --------GLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-------------ADSLSP 128 (369)
T ss_dssp --------CSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------
T ss_pred --------eeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-------------cccccc
Confidence 122222111101100 0011 34567788889999999999999988765432 123345
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCC---CeEEEEcCCCcEEEEECCCCeEEEEEccee
Q 020454 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGKLLGCFIGKC 300 (326)
Q Consensus 224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~---~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~ 300 (326)
++..+++++.|+.|+.||.+++ +.+..+.... ....+++++. ..+++++.+|.|+.||.++|+.+.++..
T Consensus 129 --~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-- 201 (369)
T 2hz6_A 129 --STSLLYLGRTEYTITMYDTKTR-ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-- 201 (369)
T ss_dssp ------EEEEEEEEEEECCCSSSS-SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC--
T ss_pred --cCCEEEEEecCCEEEEEECCCC-CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC--
Confidence 3448888899999999999987 4455554321 1223344432 5678889999999999999999887763
Q ss_pred cceEEE-EEECCCCC
Q 020454 301 SGSIRS-IARHPTLP 314 (326)
Q Consensus 301 ~~~v~~-l~~~p~~~ 314 (326)
..++.. ..+++++.
T Consensus 202 ~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 202 ASPVVAFYVWQREGL 216 (369)
T ss_dssp SSCEEEEEECTTSSC
T ss_pred CCceEEEEEecCCce
Confidence 445543 45556664
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.36 E-value=3.3e-10 Score=91.06 Aligned_cols=223 Identities=9% Similarity=-0.040 Sum_probs=133.2
Q ss_pred cCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCC
Q 020454 21 DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ 100 (326)
Q Consensus 21 ~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 100 (326)
..++.|.+|+..+. ... .+... .......+.++ +++.++++.. ++.|.+||...+.. ..+..
T Consensus 43 ~~~~~i~~~~~~~~-----~~~-~~~~~-~~~~p~~i~~~--~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~------- 104 (270)
T 1rwi_B 43 GMYGRVVKLATGST-----GTT-VLPFN-GLYQPQGLAVD--GAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPF------- 104 (270)
T ss_dssp SSSCEEEEECC----------E-ECCCC-SCCSCCCEEEC--TTCCEEEEET-TTEEEEECTTCSCC-EECCC-------
T ss_pred CCCCcEEEecCCCc-----ccc-eEeeC-CcCCcceeEEC--CCCCEEEEcC-CCEEEEEeCCCceE-eeeec-------
Confidence 56778888886543 111 11111 11111223333 3444444444 89999999865443 22221
Q ss_pred CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEe
Q 020454 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180 (326)
Q Consensus 101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 180 (326)
.....+.++.+.+ ++..+++...++.|.+|+..... ...........+..++++++++++++.
T Consensus 105 ~~~~~p~~i~~~~--------~g~l~v~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~p~~i~~~~~g~l~v~~ 167 (270)
T 1rwi_B 105 DGLNYPEGLAVDT--------QGAVYVADRGNNRVVKLAAGSKT---------QTVLPFTGLNDPDGVAVDNSGNVYVTD 167 (270)
T ss_dssp CSCSSEEEEEECT--------TCCEEEEEGGGTEEEEECTTCCS---------CEECCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CCcCCCcceEECC--------CCCEEEEECCCCEEEEEECCCce---------eEeeccccCCCceeEEEeCCCCEEEEE
Confidence 1123566677543 34455555667888888533211 011111122357789999999988777
Q ss_pred cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCC
Q 020454 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRET 259 (326)
Q Consensus 181 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~ 259 (326)
..++.|.+||............ ....+.++++.+ ++.++++...++.|.+||.... . ..... .+..
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~---------~~~~p~~i~~d~--~g~l~v~~~~~~~v~~~~~~~~-~-~~~~~~~~~~ 234 (270)
T 1rwi_B 168 TDNNRVVKLEAESNNQVVLPFT---------DITAPWGIAVDE--AGTVYVTEHNTNQVVKLLAGST-T-STVLPFTGLN 234 (270)
T ss_dssp GGGTEEEEECTTTCCEEECCCS---------SCCSEEEEEECT--TCCEEEEETTTSCEEEECTTCS-C-CEECCCCSCS
T ss_pred CCCCEEEEEecCCCceEeeccc---------CCCCceEEEECC--CCCEEEEECCCCcEEEEcCCCC-c-ceeeccCCCC
Confidence 7788999999876554332111 113467888887 4557777777899999998754 2 22222 2235
Q ss_pred ceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (326)
Q Consensus 260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~ 291 (326)
.+..++++++|+.+++...++.|++|++...+
T Consensus 235 ~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 235 TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 68999999999988888889999999987654
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.36 E-value=3.1e-09 Score=88.81 Aligned_cols=269 Identities=13% Similarity=0.038 Sum_probs=159.9
Q ss_pred eeeeeecC-----cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe----------cCCcEEE
Q 020454 15 LRALTFDS-----LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDI 79 (326)
Q Consensus 15 ~~l~~~~~-----~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----------~dg~i~i 79 (326)
-++.+.+. ++.|.|.|..+. ++..++.-...+ . ++ -++++++++++. .++.|.+
T Consensus 45 ~~vyV~~~~~~~~~~~V~ViD~~t~-----~v~~~I~vG~~P-~-va----~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 45 RRVYVNDPAHFAAVTQQFVIDGEAG-----RVIGMIDGGFLP-N-PV----VADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp TEEEEEECGGGCSSEEEEEEETTTT-----EEEEEEEECSSC-E-EE----ECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CEEEEEcCcccCCCCEEEEEECCCC-----eEEEEEECCCCC-c-EE----ECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 45666655 579999999877 565555433333 2 22 244566677765 3688999
Q ss_pred EeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec--CCcEEEEEccccccccccccceEEEE
Q 020454 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSW 157 (326)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~--~g~v~i~~~~~~~~~~~~~~~~~~~~ 157 (326)
||..+.+.+..+..-.....+.+ .....+.+.+ ++.+++++.. ++.|.++|+.... .+..+
T Consensus 114 iD~~t~~v~~~I~v~~g~r~~~g-~~P~~~a~sp--------DGk~lyVan~~~~~~VsVID~~t~~--------vv~tI 176 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRFLVG-TYPWMTSLTP--------DGKTLLFYQFSPAPAVGVVDLEGKA--------FKRML 176 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBS-CCGGGEEECT--------TSSEEEEEECSSSCEEEEEETTTTE--------EEEEE
T ss_pred EECCCCeEEEEEECCCccccccC-CCCceEEEcC--------CCCEEEEEEcCCCCeEEEEECCCCc--------EEEEE
Confidence 99999998887764100000001 1233355444 5667777763 6899999987654 34444
Q ss_pred EccCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCce-eeeEEeecCCCcEEEEEe
Q 020454 158 NVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWF-TSAAFLSIDDHRKFVAGT 234 (326)
Q Consensus 158 ~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~~l~~~~ 234 (326)
.+. +. ..+.|. .+.+++.+.||.+.+.++.+ ++......... . .. ...+ ....|.+. ++++ +..+
T Consensus 177 ~v~--g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~-~---~~-~~~~~~~~~~~~~-dG~~-~~vs 244 (386)
T 3sjl_D 177 DVP--DC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF-H---PE-DEFLINHPAYSQK-AGRL-VWPT 244 (386)
T ss_dssp ECC--SE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC-S---CT-TSCBCSCCEEETT-TTEE-EEEB
T ss_pred ECC--Cc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeeccee-c---cc-cccccccceeEcC-CCcE-EEEe
Confidence 432 11 112233 35666777888888888876 45432211110 0 00 0111 12355532 5644 4466
Q ss_pred CCCeEEEEeCCCCCC-ceeEEe----------ecCCceEEEEecCCCCeEEEEcC----------CCcEEEEECCCCeEE
Q 020454 235 NDHQVRLYDTSAQRR-PVMSFD----------FRETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLL 293 (326)
Q Consensus 235 ~dg~v~iwd~~~~~~-~~~~~~----------~~~~~i~~v~~s~~~~~l~~g~~----------dg~v~iwd~~~~~~~ 293 (326)
.+|+|++.|+..... .+..+. ........++++++++.+++... .+.|.++|+++++.+
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~ 324 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 324 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence 689999999975421 122222 01123345778999998887643 257999999999999
Q ss_pred EEEcceecceEEEEEECCCCC-EEEE-eccCccC
Q 020454 294 GCFIGKCSGSIRSIARHPTLP-IIAS-CGFLEAA 325 (326)
Q Consensus 294 ~~~~~~~~~~v~~l~~~p~~~-~l~s-~s~D~~~ 325 (326)
.++.. ..++++|+++|+++ +|++ ...++.+
T Consensus 325 ~~i~v--g~~~~~lavs~D~~~~ly~tn~~~~~V 356 (386)
T 3sjl_D 325 AKFEM--GHEIDSINVSQDEKPLLYALSTGDKTL 356 (386)
T ss_dssp EEEEE--EEEECEEEECSSSSCEEEEEETTTTEE
T ss_pred EEEEC--CCCcceEEECCCCCeEEEEEcCCCCeE
Confidence 99884 45899999999986 5555 4445543
No 198
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.35 E-value=4.9e-10 Score=93.05 Aligned_cols=217 Identities=10% Similarity=-0.025 Sum_probs=134.0
Q ss_pred EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccc
Q 020454 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA 147 (326)
Q Consensus 68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~ 147 (326)
++....++.++.|. ++....+. .+...+.++.+.+ ++..+++...++.|.+|+.+...
T Consensus 20 ~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~--------~g~l~~~~~~~~~i~~~d~~~~~--- 77 (333)
T 2dg1_A 20 AVPIISESELQTIT---AEPWLEIS--------KKGLQLEGLNFDR--------QGQLFLLDVFEGNIFKINPETKE--- 77 (333)
T ss_dssp SSCCCCGGGSCEEE---CEEEEEEE--------SSCCCEEEEEECT--------TSCEEEEETTTCEEEEECTTTCC---
T ss_pred eeEEeecccCcccc---cceeEEEe--------ccCccccCcEECC--------CCCEEEEECCCCEEEEEeCCCCc---
Confidence 33346678888882 22222222 1223456666533 34455567788999999865322
Q ss_pred ccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454 148 ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (326)
Q Consensus 148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 223 (326)
++.+.......+.+++++++++++++...+ +.|.+||..+++....+.... ....+..+.+.|
T Consensus 78 ------~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~~~~~i~~d~ 144 (333)
T 2dg1_A 78 ------IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS-------TAYCIDDMVFDS 144 (333)
T ss_dssp ------EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS-------SCCCEEEEEECT
T ss_pred ------EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc-------cCCcccceEECC
Confidence 222222335679999999999988877666 689999988766542222111 123578889987
Q ss_pred cCCCcEEEEEeC------CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCC-CeEEEE
Q 020454 224 IDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRT-GKLLGC 295 (326)
Q Consensus 224 ~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~-~~~~~~ 295 (326)
+++++++... .+.|..+|.... + +..+......+..++|+|++++|+ +.+.++.|.+||+.+ ++.+..
T Consensus 145 --~g~l~v~~~~~~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~ 220 (333)
T 2dg1_A 145 --KGGFYFTDFRGYSTNPLGGVYYVSPDFR-T-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP 220 (333)
T ss_dssp --TSCEEEEECCCBTTBCCEEEEEECTTSC-C-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE
T ss_pred --CCCEEEEeccccccCCCceEEEEeCCCC-E-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc
Confidence 4556665543 356777776643 2 333333334578899999998665 555678999999964 332221
Q ss_pred E-----cce-ecceEEEEEECCCCCEEEEeccCc
Q 020454 296 F-----IGK-CSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 296 ~-----~~~-~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
+ ... ....+..+++++++.+.++...++
T Consensus 221 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~ 254 (333)
T 2dg1_A 221 FGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG 254 (333)
T ss_dssp EEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT
T ss_pred ccceEEEecCCCCCCCceEECCCCCEEEEEcCCC
Confidence 1 100 013678899999998877765554
No 199
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.34 E-value=8.2e-10 Score=100.37 Aligned_cols=275 Identities=11% Similarity=0.049 Sum_probs=168.7
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCc---------eEEEEEeeeCCCCCeEEEEecCCcEEEEecccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSN---------CVLAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~ 85 (326)
-++.+++.+|.|..+|..++ +..-++....... ....... .+..+++++.|+.|..+|..+|
T Consensus 78 g~vyv~~~~~~v~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG 148 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTG-----NRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATG 148 (677)
T ss_dssp TEEEEECGGGCEEEEETTTT-----EEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTC
T ss_pred CEEEEECCCCeEEEEECCCC-----cEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCC
Confidence 45777888899999998877 4432322211100 0001111 1346899999999999999999
Q ss_pred ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------CCcEEEEEccccccccccccceEEEEEc
Q 020454 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVSAESSCSTVKSWNV 159 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------~g~v~i~~~~~~~~~~~~~~~~~~~~~~ 159 (326)
+.+..+...... .....+...-.. .++.+++++. +|.|+.+|....+. +|..
T Consensus 149 ~~~W~~~~~~~~---~~~~~~~~~p~v---------~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~----------~W~~ 206 (677)
T 1kb0_A 149 KEVWHQNTFEGQ---KGSLTITGAPRV---------FKGKVIIGNGGAEYGVRGYITAYDAETGER----------KWRW 206 (677)
T ss_dssp CEEEEEETTTTC---CSSCBCCSCCEE---------ETTEEEECCBCTTTCCBCEEEEEETTTCCE----------EEEE
T ss_pred CEEeeecCCcCc---CcCcccccCcEE---------ECCEEEEEecccccCCCCEEEEEECCCCcE----------EEEe
Confidence 988776642000 000111110000 2346666654 67888888654331 2221
Q ss_pred cC---------------------------------CCceEEEEEcCCCCEEEEecCCC-------------------eEE
Q 020454 160 CA---------------------------------SGTIAFSKVDISEKFSLFGGKGV-------------------EVN 187 (326)
Q Consensus 160 ~~---------------------------------~~~v~~~~~~~~~~~l~sg~~d~-------------------~i~ 187 (326)
.. ......++++|++++++.+..++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 11 11123577888888888877664 599
Q ss_pred EEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC---cEEEEEeCCCeEEEEeCCCCCCceeEEeecCC-----
Q 020454 188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET----- 259 (326)
Q Consensus 188 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----- 259 (326)
.+|.++++.++..+....+.+.........-+.... ++ ..++.++.+|.++++|..++ +.+..+.....
T Consensus 287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~--dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI--AGKPRKVILHAPKNGFFFVLDRTNG-KFISAKNFVPVNWASG 363 (677)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEE
T ss_pred EEECCCCCEEEEEecCCCcccccccCCCcEEEeccc--CCcEeeEEEEECCCCEEEEEECCCC-CEeccccccccCcccc
Confidence 999999999998776544333222112111112222 34 57899999999999999988 55555542210
Q ss_pred ------ce------------------------EEEEecCCCCeEEEEcC-------------------------------
Q 020454 260 ------PI------------------------KAVAEEPDSFNIYIGNG------------------------------- 278 (326)
Q Consensus 260 ------~i------------------------~~v~~s~~~~~l~~g~~------------------------------- 278 (326)
++ ..++++|+..++++...
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 11 14688898888887543
Q ss_pred ------------CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 279 ------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 279 ------------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.|.|..||+.+++.+.+++. ..++.+..+..++.+++.++.||.+
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~~~g~~v~~g~~dg~l 500 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRL 500 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred cccccccCCCCCccEEEEEeCCCCcEEeecCC--CCCCcCcceEeCCCEEEEECCCCcE
Confidence 27899999999999888762 4455566666777788888888764
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.34 E-value=3.7e-09 Score=89.05 Aligned_cols=219 Identities=11% Similarity=-0.048 Sum_probs=130.5
Q ss_pred cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe----------cCCcEEEEEcccccc
Q 020454 76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT----------TKGKASMRSIEVTKV 145 (326)
Q Consensus 76 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~----------~~g~v~i~~~~~~~~ 145 (326)
+|.+||..+++.+..+.. +..+ ++.+.+ ++..++++. .++.|.++|.....
T Consensus 48 ~v~v~D~~t~~~~~~i~~--------g~~p--~i~~sp--------Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~- 108 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNG--------GFLP--NPVAAH--------SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL- 108 (373)
T ss_pred EEEEEECCCCeEEEEecC--------CCCC--CeEECC--------CCCEEEEEeccccccccCCCCCeEEEEECCCCc-
Confidence 889999998888766553 2233 566544 556777765 36789999976433
Q ss_pred ccccccceEEEEEcc------CCCceEEEEEcCCCCEEEEecC--CCeEEEEECCCceeeee-ecCCCCCCC--------
Q 020454 146 SAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWT-AKPPPKNSL-------- 208 (326)
Q Consensus 146 ~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~sg~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~-------- 208 (326)
.+..+.+. .......+.++|++++|+++.. ++.|.++| .+++.+.. +........
T Consensus 109 -------~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~ 180 (373)
T 2mad_H 109 -------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTF 180 (373)
T ss_pred -------EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceE
Confidence 22222221 0123457899999999988764 57899999 98887665 432110000
Q ss_pred -CcC----------CCCce----------------eeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-ceeEEee----
Q 020454 209 -GIF----------TPTWF----------------TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDF---- 256 (326)
Q Consensus 209 -~~~----------~~~~v----------------~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~---- 256 (326)
... ....+ ....+.+. ++ .++..+..+.+.+.|+..... .+..+..
T Consensus 181 ~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~-~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~ 258 (373)
T 2mad_H 181 YLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-SG-RIVWPVYSGKILQADISAAGATNKAPIDALSGG 258 (373)
T ss_pred EEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEec-CC-EEEEEcCCceEEEEeccCCcceEeeeeeecCCc
Confidence 000 00000 00112221 12 222223556777777654311 1112211
Q ss_pred ------cCCceEEEEecCCCCeEEEEcC----------CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC-EEEEe
Q 020454 257 ------RETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASC 319 (326)
Q Consensus 257 ------~~~~i~~v~~s~~~~~l~~g~~----------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~ 319 (326)
.......++++|+++.++++.. ++.|.++|..+++.+.++.. .....+++|+|+++ +++++
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~--g~~p~~i~~s~Dg~~~l~v~ 336 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDLYAL 336 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--CCCcCeEEECCCCCeEEEEE
Confidence 1122344788999998887653 35799999999999999874 44689999999999 77777
Q ss_pred cc-CccC
Q 020454 320 GF-LEAA 325 (326)
Q Consensus 320 s~-D~~~ 325 (326)
.. ++.+
T Consensus 337 ~~~~~~V 343 (373)
T 2mad_H 337 SAGTEVL 343 (373)
T ss_pred cCCCCeE
Confidence 63 5543
No 201
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.34 E-value=5.4e-10 Score=93.30 Aligned_cols=195 Identities=13% Similarity=0.060 Sum_probs=121.2
Q ss_pred CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC---Cc--EEEEEccccccccc
Q 020454 74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GK--ASMRSIEVTKVSAE 148 (326)
Q Consensus 74 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~---g~--v~i~~~~~~~~~~~ 148 (326)
++.|.+||+.+++.. .+ ..+....+.+ ++..|+..+.+ +. |.+|++....
T Consensus 42 ~~~l~~~d~~~~~~~-~l------------~~~~~~~~Sp--------Dg~~la~~~~~~~~~~~~l~~~~~~~g~---- 96 (347)
T 2gop_A 42 ENTIVIENLKNNARR-FI------------ENATMPRISP--------DGKKIAFMRANEEKKVSEIWVADLETLS---- 96 (347)
T ss_dssp EEEEEEEETTTCCEE-EE------------ESCEEEEECT--------TSSEEEEEEEETTTTEEEEEEEETTTTE----
T ss_pred cceEEEEeCCCCceE-Ec------------ccCCCeEECC--------CCCEEEEEEeccCCCcceEEEEECCCCc----
Confidence 577999999776642 22 1344455544 55667766543 34 5555544321
Q ss_pred cccceEEEEEccCCCceEEEEEcCCCCEEEEecCC---------------------------CeEEEEECCCceeeeeec
Q 020454 149 SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG---------------------------VEVNVWDLDKCEKIWTAK 201 (326)
Q Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---------------------------~~i~iwd~~~~~~~~~~~ 201 (326)
...+... .. +..+.|+|+++.|+.++.+ ..|.+||+.+++.+..+.
T Consensus 97 ----~~~l~~~--~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~ 169 (347)
T 2gop_A 97 ----SKKILEA--KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE 169 (347)
T ss_dssp ----EEEEEEE--SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE
T ss_pred ----eEEEEcC--CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec
Confidence 2233332 22 8899999999988877632 569999998877633332
Q ss_pred CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-------eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE
Q 020454 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY 274 (326)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-------~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~ 274 (326)
. . .+..+.|+| ++ +++++..++ ...||.+.++ + ...+..+ ..+..+ +|+|++|+
T Consensus 170 ~-~----------~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~-~~~l~~~-~~~~~~--spdg~~l~ 230 (347)
T 2gop_A 170 K-P----------RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWEDG-K-EEKMFEK-VSFYAV--DSDGERIL 230 (347)
T ss_dssp E-E----------TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEETT-E-EEEEEEE-ESEEEE--EECSSCEE
T ss_pred C-C----------CcccccCCC--Ce-EEEEEecccccccccccccEEEeCCC-c-eEEeccC-cceeeE--CCCCCEEE
Confidence 2 1 255778987 56 777775542 3344433333 2 3444444 445544 99999988
Q ss_pred EEcCC--------CcEEEEECCCCeEEEEEcceecceEEE-EEECCCCCEEEEeccCcc
Q 020454 275 IGNGS--------GDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGFLEA 324 (326)
Q Consensus 275 ~g~~d--------g~v~iwd~~~~~~~~~~~~~~~~~v~~-l~~~p~~~~l~s~s~D~~ 324 (326)
.++.+ ..|.+|| +++.......+ ...+.. +.|+ ++ ++++++.|+.
T Consensus 231 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~-~~~~~~~~~~s-dg-~~~~~~~~~~ 284 (347)
T 2gop_A 231 LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV-DRGVGQAKIKD-GK-VYFTLFEEGS 284 (347)
T ss_dssp EEECCSSSCCCSSCEEEEEC--SSCEEESSTTC-CSEEEEEEEET-TE-EEEEEEETTE
T ss_pred EEEccccCCccccceEEEEC--CCceEeccccC-CcccCCccEEc-Cc-EEEEEecCCc
Confidence 66644 3688888 56554444555 778886 9999 88 8888888874
No 202
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.33 E-value=1.4e-08 Score=82.67 Aligned_cols=218 Identities=8% Similarity=0.024 Sum_probs=139.9
Q ss_pred CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (326)
Q Consensus 63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~ 142 (326)
.++.+.++...++.|.+|+.. +++.. +... .....+.++...+ ++..+++...++.|..++..
T Consensus 29 ~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~------~~~~~~~~i~~~~--------~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 29 EDGKVWFTQHKANKISSLDQS-GRIKE-FEVP------TPDAKVMCLIVSS--------LGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp TTSCEEEEETTTTEEEEECTT-SCEEE-EECS------STTCCEEEEEECT--------TSCEEEEETTTTEEEEECTT-
T ss_pred CCCCEEEEcCCCCeEEEECCC-CceEE-EECC------CCCCcceeEEECC--------CCCEEEEecCCCeEEEECCC-
Confidence 345555555578999999986 66533 2210 1224566666533 33444444457788888754
Q ss_pred cccccccccceEEEEEcc-CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeee-eecCCCCCCCCcCCCCceeeeE
Q 020454 143 TKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNSLGIFTPTWFTSAA 220 (326)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~ 220 (326)
. .+..+... ....+..++++++++++++...++.|..||.. ++... .... ....+.+++
T Consensus 92 g---------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~---------~~~~~~~i~ 152 (300)
T 2qc5_A 92 G---------GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN---------KGSYPAFIT 152 (300)
T ss_dssp S---------CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS---------TTCCEEEEE
T ss_pred C---------CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC---------CCCCceeEE
Confidence 1 22333332 23568899999999988887778899999987 44432 2111 113467888
Q ss_pred EeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe--ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE-Ec
Q 020454 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FI 297 (326)
Q Consensus 221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~-~~ 297 (326)
+.+ +++++++...++.|..||. .+ . ...+. .....+..++++++|+..++....+.|.+||. +++.... +.
T Consensus 153 ~d~--~g~l~v~~~~~~~i~~~~~-~g-~-~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~ 226 (300)
T 2qc5_A 153 LGS--DNALWFTENQNNSIGRITN-TG-K-LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIP 226 (300)
T ss_dssp ECT--TSSEEEEETTTTEEEEECT-TC-C-EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred ECC--CCCEEEEecCCCeEEEECC-CC-c-EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECC
Confidence 876 4556666666889999998 34 2 22333 23456889999999977777667778999998 5554432 33
Q ss_pred ceecceEEEEEECCCCCEEEEeccCc
Q 020454 298 GKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 298 ~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
.+ ...+.+|++++++.+.++...++
T Consensus 227 ~~-~~~~~~i~~d~~g~l~v~~~~~~ 251 (300)
T 2qc5_A 227 TP-NARPHAITAGKNSEIWFTEWGAN 251 (300)
T ss_dssp ST-TCCEEEEEECSTTCEEEEETTTT
T ss_pred CC-CCCceEEEECCCCCEEEeccCCC
Confidence 33 55788999999998776664433
No 203
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.33 E-value=1.4e-09 Score=99.65 Aligned_cols=225 Identities=8% Similarity=-0.086 Sum_probs=136.5
Q ss_pred EEeeeCCCCCeEEEE-----ecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454 57 ASIDDSQNDPLLAVA-----RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (326)
Q Consensus 57 ~~~~~~~~~~~l~~g-----~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~ 131 (326)
.+..+++++++|+.+ +.+.+|++||+.+++.+..... . .....++.+.+ ++..|+.++.
T Consensus 124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-------~-~~~~~~~~wsp--------Dg~~l~~~~~ 187 (695)
T 2bkl_A 124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-------E-GGKYATPKWTP--------DSKGFYYEWL 187 (695)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-------S-CCTTCCCEECT--------TSSEEEEEEC
T ss_pred EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-------C-cccccceEEec--------CCCEEEEEEe
Confidence 344456777788844 3345899999998886411111 0 01113455544 5567888877
Q ss_pred CCc-------------EEEEEccccccccccccceEEEEEcc-CCCceEEEEEcCCCCEEEEecCCC----eEEEEECCC
Q 020454 132 KGK-------------ASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGV----EVNVWDLDK 193 (326)
Q Consensus 132 ~g~-------------v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~----~i~iwd~~~ 193 (326)
+.. |++|++..... ....++... +...+..+.++|+|++|+.++.++ .|.+||..+
T Consensus 188 d~~~~~~~~~~~~~~~v~~~~l~t~~~------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~ 261 (695)
T 2bkl_A 188 PTDPSIKVDERPGYTTIRYHTLGTEPS------KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE 261 (695)
T ss_dssp CCCTTSCGGGGGGGCEEEEEETTSCGG------GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC
T ss_pred cCCCCCccccCCCCCEEEEEECCCCch------hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC
Confidence 665 88998764321 112333332 224688999999999888777665 677776654
Q ss_pred ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe---CCCeEEEEeCCCCCC-ceeEEeec--CCceEEEEec
Q 020454 194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRR-PVMSFDFR--ETPIKAVAEE 267 (326)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~---~dg~v~iwd~~~~~~-~~~~~~~~--~~~i~~v~~s 267 (326)
++... +..+. ..+....+ + ++.+++... .++.|.+||+.+... ....+..+ ...+..++|+
T Consensus 262 ~~~~~-l~~~~---------~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 262 KDFRL-LVKGV---------GAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp SSCEE-EEECS---------SCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred CceEE-eecCC---------CceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence 43322 22111 12233344 4 344444443 258999999976521 12333333 4567888888
Q ss_pred CCCCeEEEEcCCCcEEEEECC-CCeEEEEEcceecceEEEEEECCCCCEEE
Q 020454 268 PDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (326)
Q Consensus 268 ~~~~~l~~g~~dg~v~iwd~~-~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 317 (326)
++.++++...|+..++|.+. +++.+..+..+..+.|..++++|+++.|+
T Consensus 329 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 378 (695)
T 2bkl_A 329 -GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAY 378 (695)
T ss_dssp -TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred -CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEE
Confidence 67778888999988887665 46556656543256788899999887665
No 204
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.32 E-value=1.1e-09 Score=89.30 Aligned_cols=173 Identities=9% Similarity=-0.072 Sum_probs=119.3
Q ss_pred eEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCC
Q 020454 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (326)
Q Consensus 125 ~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~ 204 (326)
.+++...++.|..|+.+.. ++.+.. ....+.+++++++++++++...++.|.+||..+++.........
T Consensus 42 l~~~~~~~~~i~~~~~~~~----------~~~~~~-~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~ 110 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ----------LSPEMH-PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFE 110 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC----------EEEEES-SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEET
T ss_pred EEEEeCCCCEEEEEECCCC----------eEEEEC-CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC
Confidence 5777888999999986431 334443 34578999999999988887778899999997776543322111
Q ss_pred CCCCCcCCCCceeeeEEeecCCCcEEEE----Ee-------------CCCeEEEEeCCCCCCceeEEeecCCceEEEEec
Q 020454 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVA----GT-------------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (326)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~p~~~~~~l~~----~~-------------~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s 267 (326)
.. ....+..+++.| +++++++ ++ ..+.|..+|.. + + +..+..+......++|+
T Consensus 111 ~~-----~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~-~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 111 GK-----KLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-T-LSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp TE-----ECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-C-EEEEECCCSSEEEEEEC
T ss_pred CC-----CCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC-C-C-EEEeecCCCCCccEEEC
Confidence 00 112356788887 5667776 33 13466666655 3 2 44454555677899999
Q ss_pred CCCCeEEEEcCCCcEEEEECC-CCeE---EEEEcceecceEEEEEECCCCCEEEEe
Q 020454 268 PDSFNIYIGNGSGDLASVDIR-TGKL---LGCFIGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 268 ~~~~~l~~g~~dg~v~iwd~~-~~~~---~~~~~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
|+++.+++.+.++.|.+||+. ++++ ...+..+ .+.+.++++++++.+.++.
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE-PGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS-SSCCCSEEEBTTSCEEEEE
T ss_pred CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC-CCCCCeEEECCCCCEEEEc
Confidence 999998888888999999997 5554 3334333 5667889999999877766
No 205
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.31 E-value=1.1e-08 Score=87.36 Aligned_cols=229 Identities=12% Similarity=0.050 Sum_probs=142.0
Q ss_pred CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC--cEEEEE
Q 020454 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG--KASMRS 139 (326)
Q Consensus 62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g--~v~i~~ 139 (326)
++++.++++...++.|++||..++.+...... . .... +++.+ .++.++++..++ .|.+++
T Consensus 139 d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--------~-~~~~-ia~~~--------~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 139 VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--------F-KGGK-PAVTK--------DKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CSTTEEEEEETTTTEEEEEETTTTEEEEEEET--------C-CBCB-CEECT--------TSSEEEEEBSSTTCEEEEEE
T ss_pred eCCCCEEEEecCCCcEEEEECCCCEEEEeecc--------C-CCCc-eeEec--------CCCcEEEEecCCCceEEEEE
Confidence 35566777777789999999977776444332 1 1122 44433 455777777766 566666
Q ss_pred ccccccccccccceEEEE-E--ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCce
Q 020454 140 IEVTKVSAESSCSTVKSW-N--VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF 216 (326)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 216 (326)
..... ..+.. . ......+.+++++|++..|+.+..++.|..||..++.............. ...+.
T Consensus 201 ~~~~~--------~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~---~~~P~ 269 (409)
T 3hrp_A 201 KASGW--------APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSL---GTNPG 269 (409)
T ss_dssp GGGTT--------CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCC---CCSSC
T ss_pred cCCCc--------eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCC---CCCcc
Confidence 54321 11111 1 11245678899999555555567788999999987653222110000000 00111
Q ss_pred eeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC---------------CceEEEEecCCCCeEEEEc-CCC
Q 020454 217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------------TPIKAVAEEPDSFNIYIGN-GSG 280 (326)
Q Consensus 217 ~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------------~~i~~v~~s~~~~~l~~g~-~dg 280 (326)
..++|+|. ++.++++-..++.|+.|+.... +..+..+. .....++++|+|+++++-. .++
T Consensus 270 ~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~ 345 (409)
T 3hrp_A 270 PYLIYYFV-DSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGY 345 (409)
T ss_dssp CEEEEETT-TTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTC
T ss_pred ccEEEeCC-CCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCC
Confidence 28899984 4557777788899999997643 33333322 3478899999999777777 789
Q ss_pred cEEEEECCCCeEEEEEcce--------------ecceEEEEEECCCCCEEEEeccCcc
Q 020454 281 DLASVDIRTGKLLGCFIGK--------------CSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 281 ~v~iwd~~~~~~~~~~~~~--------------~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
.|+.||+.+++... +.++ .-.....|+++|++.++++-...+.
T Consensus 346 ~I~~~~~~~G~v~~-~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~ 402 (409)
T 3hrp_A 346 CLRKLDILDGYVST-VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA 402 (409)
T ss_dssp EEEEEETTTTEEEE-EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred EEEEEECCCCEEEE-EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence 99999988887543 3321 0135789999999877777665544
No 206
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.28 E-value=7.7e-09 Score=94.18 Aligned_cols=275 Identities=11% Similarity=0.108 Sum_probs=164.1
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCc--------eE-EEEEeeeCCCCCeEEEEecCCcEEEEecccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSN--------CV-LAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~ 85 (326)
-++.+++.+|.|..+|..++ +..-++....... .+ ..... .+..+++++.|+.|..+|..+|
T Consensus 71 g~vyv~~~~~~v~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG 141 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDG-----RLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTG 141 (689)
T ss_dssp TEEEEECGGGCEEEEETTTC-----CEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTC
T ss_pred CEEEEEcCCCeEEEEECCCC-----ceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCC
Confidence 46778888899999999877 4432322111100 00 00111 1336899999999999999999
Q ss_pred ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------CCcEEEEEccccccccccccceEEEEEc
Q 020454 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVSAESSCSTVKSWNV 159 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------~g~v~i~~~~~~~~~~~~~~~~~~~~~~ 159 (326)
+.+..+...... .....+.+.-.. .++.++++.. +|.|+.+|....+. +|..
T Consensus 142 ~~~W~~~~~~~~---~~~~~~~~sP~v---------~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~----------~W~~ 199 (689)
T 1yiq_A 142 QRAWSVDTRADH---KRSYTITGAPRV---------VNGKVVIGNGGAEFGVRGYVTAYDAETGKE----------AWRF 199 (689)
T ss_dssp CEEEEEECCSCT---TSCCBCCSCCEE---------ETTEEEECCBCTTTCCBCEEEEEETTTCCE----------EEEE
T ss_pred CEeeeecCcCCC---CCCccccCCcEE---------ECCEEEEEeCCCccCCCCEEEEEECCCCcE----------EEEe
Confidence 987776642000 000011100000 1345555543 57787777654331 2221
Q ss_pred cC--------------------------------CCceEEEEEcCCCCEEEEecCCCe-------------------EEE
Q 020454 160 CA--------------------------------SGTIAFSKVDISEKFSLFGGKGVE-------------------VNV 188 (326)
Q Consensus 160 ~~--------------------------------~~~v~~~~~~~~~~~l~sg~~d~~-------------------i~i 188 (326)
.. ...-..+.++|+.++++.+..++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 10 011125778888888888887764 999
Q ss_pred EECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc---EEEEEeCCCeEEEEeCCCCCCceeEEeecCC------
Q 020454 189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRET------ 259 (326)
Q Consensus 189 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------ 259 (326)
+|.++++.++..+....+.+.........-..... +++ .++.++.+|.++++|.+++ +++........
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~--~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~ 356 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI--DGKPRKVLMQAPKNGFFYVIDRATG-ELLSAKGIVPQSWTKGM 356 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEEE
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeecc--CCcEEEEEEEECCCCeEEEEECCCC-CEecccccccccccccc
Confidence 99999999998775433332221111111111111 343 6888999999999999988 44433221110
Q ss_pred ---------------------------------ceEEEEecCCCCeEEEEcC----------------------------
Q 020454 260 ---------------------------------PIKAVAEEPDSFNIYIGNG---------------------------- 278 (326)
Q Consensus 260 ---------------------------------~i~~v~~s~~~~~l~~g~~---------------------------- 278 (326)
.-..++|+|+...+++...
T Consensus 357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 436 (689)
T 1yiq_A 357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT 436 (689)
T ss_dssp ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence 0112688888877776532
Q ss_pred -----------------CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 279 -----------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 279 -----------------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
+|.|+.||+.+++.+.+++.+ .++..-.+...+.+|+.++.||.+
T Consensus 437 ~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~gt~dg~l 498 (689)
T 1yiq_A 437 GMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--TIFNGGTLSTAGNLVFEGSADGRV 498 (689)
T ss_dssp CCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEE
T ss_pred cccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC--CCccCccceECCCEEEEECCCCcE
Confidence 378999999999999887743 334444566677899999998864
No 207
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.28 E-value=1.1e-08 Score=84.59 Aligned_cols=211 Identities=9% Similarity=-0.064 Sum_probs=130.8
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
+.+++++..++.|..|+..+++.. .+.. ...+.++.+.+ ++.+++++.+ .|.+|+.....
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~-~~~~---------~~~v~~i~~~~---------dg~l~v~~~~-gl~~~d~~~g~ 120 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKT-VHAL---------PFMGSALAKIS---------DSKQLIASDD-GLFLRDTATGV 120 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEE-EEEC---------SSCEEEEEEEE---------TTEEEEEETT-EEEEEETTTCC
T ss_pred CEEEEEECCCCEEEEEECCCCcEE-EEEC---------CCcceEEEEeC---------CCeEEEEECC-CEEEEECCCCc
Confidence 446777778899999999776643 2221 13567676543 3445555544 48888864322
Q ss_pred cccccccceEEEE-Ecc---CCCceEEEEEcCCCCEEEEecC------CCeEEEEECCCceeeeeecCCCCCCCCcCCCC
Q 020454 145 VSAESSCSTVKSW-NVC---ASGTIAFSKVDISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT 214 (326)
Q Consensus 145 ~~~~~~~~~~~~~-~~~---~~~~v~~~~~~~~~~~l~sg~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 214 (326)
+..+ ... ....+..+.++|+++++++... .+.|..+| +++....... ..
T Consensus 121 ---------~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~----------~~ 179 (326)
T 2ghs_A 121 ---------LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD----------IS 179 (326)
T ss_dssp ---------EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE----------ES
T ss_pred ---------EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC----------Cc
Confidence 2222 111 1235889999999987665432 24555565 4443221111 02
Q ss_pred ceeeeEEeecCCCcEE-EEEeCCCeEEEEeCC--CC-CC-ceeEE---eecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454 215 WFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTS--AQ-RR-PVMSF---DFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (326)
Q Consensus 215 ~v~~~~~~p~~~~~~l-~~~~~dg~v~iwd~~--~~-~~-~~~~~---~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd 286 (326)
....++|+| +++.+ ++.+.++.|.+||+. ++ .. ....+ .........++++++|++.++...++.|.+||
T Consensus 180 ~~~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 180 IPNSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp SEEEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred ccCCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence 356788887 45444 555667899999975 33 11 11122 12334567899999998777766678999999
Q ss_pred CCCCeEEEEEcceecceEEEEEEC-CCCCEEEEec
Q 020454 287 IRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCG 320 (326)
Q Consensus 287 ~~~~~~~~~~~~~~~~~v~~l~~~-p~~~~l~s~s 320 (326)
. +++.+..+..+ ...+.+++|. |++..|+.++
T Consensus 258 ~-~g~~~~~i~~~-~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 258 T-DGNHIARYEVP-GKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp T-TCCEEEEEECS-CSBEEEEEEESTTSCEEEEEE
T ss_pred C-CCCEEEEEECC-CCCcEEEEEecCCCCEEEEEe
Confidence 8 67777777765 6679999998 8877665444
No 208
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.26 E-value=8.6e-10 Score=100.42 Aligned_cols=82 Identities=9% Similarity=0.043 Sum_probs=58.2
Q ss_pred CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC-
Q 020454 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP- 314 (326)
Q Consensus 236 dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~- 314 (326)
+|.|+.||+.++ +.+.++..+. +...-.+...+..++.|+.||.++.||.++|+.+.+++........-+.|..+++
T Consensus 454 ~g~l~A~D~~tG-~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~q 531 (689)
T 1yiq_A 454 SGKLIAWDPVKQ-QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQ 531 (689)
T ss_dssp EEEEEEEETTTT-EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ceeEEEEECCCC-CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEE
Confidence 478999999988 5566766553 2333355667889999999999999999999999888743122223466666765
Q ss_pred EEEEe
Q 020454 315 IIASC 319 (326)
Q Consensus 315 ~l~s~ 319 (326)
|+++.
T Consensus 532 yv~~~ 536 (689)
T 1yiq_A 532 YVTFM 536 (689)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44444
No 209
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.26 E-value=2.6e-09 Score=98.03 Aligned_cols=192 Identities=8% Similarity=-0.001 Sum_probs=123.2
Q ss_pred CeeeeecccccccccCCCCceEEEEecCC-----cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEE
Q 020454 105 GIVGLHLFKRQREESSSRSRTLLTCTTKG-----KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179 (326)
Q Consensus 105 ~i~~l~~~~~~~~~~~~~~~~l~~~~~~g-----~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 179 (326)
.+.+..+.+ ++..|+.+..++ .|++||+..... +.. ... ...+..++|+|+++.|+.
T Consensus 126 ~~~~~~~SP--------Dg~~la~~~~~~G~~~~~i~v~d~~tg~~--------~~~-~~~-~~~~~~~~wspDg~~l~~ 187 (710)
T 2xdw_A 126 ALRGYAFSE--------DGEYFAYGLSASGSDWVTIKFMKVDGAKE--------LPD-VLE-RVKFSCMAWTHDGKGMFY 187 (710)
T ss_dssp EEEEEEECT--------TSSEEEEEEEETTCSCEEEEEEETTTTEE--------EEE-EEE-EECSCCEEECTTSSEEEE
T ss_pred EEEEEEECC--------CCCEEEEEEcCCCCceEEEEEEECCCCCC--------Ccc-ccc-CcccceEEEEeCCCEEEE
Confidence 455556544 555666555433 789999765431 111 011 112567899999999988
Q ss_pred ecCCCe----------------EEEEECCCceee--eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-----C
Q 020454 180 GGKGVE----------------VNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----D 236 (326)
Q Consensus 180 g~~d~~----------------i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-----d 236 (326)
++.++. |++|++.+++.. ....... ++.++..+.|+| ++++|+..+. +
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~-------~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~ 258 (710)
T 2xdw_A 188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD-------EPKWMGGAELSD--DGRYVLLSIREGCDPV 258 (710)
T ss_dssp EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT-------CTTCEEEEEECT--TSCEEEEEEECSSSSC
T ss_pred EEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC-------CCeEEEEEEEcC--CCCEEEEEEEccCCCc
Confidence 877765 999999876521 1111110 124567889988 5667776654 6
Q ss_pred CeEEEEeCCC------CCCceeEEeecCCceEEEEecCCCCeEEEEcCC----CcEEEEECCCCeE--EEEEcceec-ce
Q 020454 237 HQVRLYDTSA------QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVDIRTGKL--LGCFIGKCS-GS 303 (326)
Q Consensus 237 g~v~iwd~~~------~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d----g~v~iwd~~~~~~--~~~~~~~~~-~~ 303 (326)
..|++||+.+ +......+..+...+.. .|+|+|+.|+..+.. +.|.+||+.++.. ...+..|.. ..
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 7899999876 32235566666555555 588999888755543 3699999987642 233444413 37
Q ss_pred EEEEEECCCCCEEEEeccCcc
Q 020454 304 IRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 304 v~~l~~~p~~~~l~s~s~D~~ 324 (326)
+..++|++++.++++...|+.
T Consensus 338 ~~~~~~~~~~~lv~~~~~~g~ 358 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLHDVK 358 (710)
T ss_dssp EEEEEEETTTEEEEEEEETTE
T ss_pred EEEEEEEcCCEEEEEEEECCE
Confidence 888999988888888887764
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.26 E-value=7.8e-11 Score=98.78 Aligned_cols=145 Identities=13% Similarity=0.096 Sum_probs=105.4
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeee--ecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT--AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~ 240 (326)
.++..+++++...++++|+.+ .+.+|++...+.... ..... .......+. |+.++| ++++|+++ .++.|+
T Consensus 38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~-~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLT-FKWEKEIPD-VIFVCF----HGDQVLVS-TRNALY 109 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCC-CSEEEECTT-EEEEEE----ETTEEEEE-ESSEEE
T ss_pred ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccccccc-ceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEE
Confidence 368899999999999999987 666799875442111 00000 111223456 999999 34588888 789999
Q ss_pred EEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
+||+++.. .......++..+.++.+.+. .+++++.||.|.+||+.++.... + ...|++++|+|+| ++.|.
T Consensus 110 v~dv~sl~-~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~-~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 110 SLDLEELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----L-AQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp EEESSSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----E-EESEEEEEECSSE--EEEEE
T ss_pred EEEchhhh-ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----c-cCCceEEEEcCCc--eEEEE
Confidence 99999764 34556667778888777654 38888999999999999887643 3 6689999999999 66777
Q ss_pred cCccC
Q 020454 321 FLEAA 325 (326)
Q Consensus 321 ~D~~~ 325 (326)
.||.+
T Consensus 180 ~dg~i 184 (388)
T 1xip_A 180 KDRSF 184 (388)
T ss_dssp TTSCE
T ss_pred cCCcE
Confidence 78754
No 211
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.25 E-value=8.5e-09 Score=87.65 Aligned_cols=261 Identities=12% Similarity=0.027 Sum_probs=152.6
Q ss_pred ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe----------cCCcEEEEeccccceeeeecc
Q 020454 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAISN 93 (326)
Q Consensus 24 G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----------~dg~i~i~~~~~~~~~~~~~~ 93 (326)
+.|.|.|..+. ++..++.-...+ . + ..++++++|+++. .++.|.++|..+.+.+..+..
T Consensus 99 ~~VsVID~~t~-----~vv~~I~vG~~P-g---i--a~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v 167 (426)
T 3c75_H 99 TQQFVIDGSTG-----RILGMTDGGFLP-H---P--VAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL 167 (426)
T ss_dssp EEEEEEETTTT-----EEEEEEEECSSC-E---E--EECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CeEEEEECCCC-----EEEEEEECCCCC-c---e--EECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence 79999999887 666555443333 2 2 2345566677775 478999999999988877764
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec--CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~--~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 171 (326)
-.......+ ....++.+.+ ++.+++++.. ++.|.+.|..... .+..+.+. .. ....
T Consensus 168 ~g~~r~~~g-~~P~~~~~sp--------DGk~lyV~n~~~~~~VsVID~~t~k--------vv~~I~v~--g~---~~~~ 225 (426)
T 3c75_H 168 PDAPRFLVG-TYQWMNALTP--------DNKNLLFYQFSPAPAVGVVDLEGKT--------FDRMLDVP--DC---YHIF 225 (426)
T ss_dssp TTCCCCCBS-CCGGGSEECT--------TSSEEEEEECSSSCEEEEEETTTTE--------EEEEEECC--SE---EEEE
T ss_pred CCccccccC-CCcceEEEcC--------CCCEEEEEecCCCCeEEEEECCCCe--------EEEEEEcC--Cc---eeec
Confidence 100000001 1233355433 5667777764 5789999977644 33344432 11 2223
Q ss_pred CCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 020454 172 ISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (326)
Q Consensus 172 ~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~ 250 (326)
|++ ..+++.+.|+.+.+.+..+++...... . .+......-...+.|.+ ++..++..+..+.|.+.|.......
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~---~~~v~~~p~~~~~~~~~--dg~~~~~~s~~g~V~ViD~~~~~~~ 299 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDFADGETKVTNT-E---VFHTEDELLINHPAFSL--RSGRLVWPTYTGKIFQADLTAEGAT 299 (426)
T ss_dssp EEETTEEEEEETTSSEEEEECCTTCCEEEEC-C---CCSCTTSCBCSCCEECT--TTCEEEEEBTTSEEEEEEECSSCEE
T ss_pred cCCCcEEEEEcCCCCEEEEECCCCcEEEEee-e---eeccCCCceeeEeeecC--CCCEEEEEeCCCcEEEEeccCCceE
Confidence 332 444555667777777775554432211 0 00000001011235555 3445556667899999998644110
Q ss_pred -eeEEee----------cCCceEEEEecCCCCeEEEEcC----------CCcEEEEECCCCeEEEEEcceecceEEEEEE
Q 020454 251 -VMSFDF----------RETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (326)
Q Consensus 251 -~~~~~~----------~~~~i~~v~~s~~~~~l~~g~~----------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~ 309 (326)
+..+.. .......++++|+++++++... ++.|.++|..+.+.+.++.. .....+|+|
T Consensus 300 v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v--g~~P~gia~ 377 (426)
T 3c75_H 300 FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL--GHEIDSINV 377 (426)
T ss_dssp ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EEEECEEEE
T ss_pred EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC--CCCcCeEEE
Confidence 111110 0111223689999988887643 35799999999999999984 346899999
Q ss_pred CCCCC-EEEEecc-CccC
Q 020454 310 HPTLP-IIASCGF-LEAA 325 (326)
Q Consensus 310 ~p~~~-~l~s~s~-D~~~ 325 (326)
+|+++ +++++.. ++.+
T Consensus 378 spDg~~~lyv~n~~s~~V 395 (426)
T 3c75_H 378 SQDAEPLLYALSAGTQTL 395 (426)
T ss_dssp CCSSSCEEEEEETTTTEE
T ss_pred ccCCCEEEEEEcCCCCeE
Confidence 99998 7877763 5543
No 212
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=5.1e-10 Score=101.73 Aligned_cols=139 Identities=15% Similarity=0.031 Sum_probs=91.7
Q ss_pred CEEEEecCCCeEEEEECCCceeeeeecCCCCCCC---C------------------cCCC-----CceeeeEEeecCCCc
Q 020454 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL---G------------------IFTP-----TWFTSAAFLSIDDHR 228 (326)
Q Consensus 175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~------------------~~~~-----~~v~~~~~~p~~~~~ 228 (326)
+.++.++.+|.+.++|.++++.++.......... . +..| ..-..++|+|. ..
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~--~~ 405 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ--TG 405 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT--TT
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC--CC
Confidence 6888999999999999999998877653321100 0 0000 00125677773 33
Q ss_pred EEEEEeC-------------------------------------------CCeEEEEeCCCCCCceeEEeecCCceEEEE
Q 020454 229 KFVAGTN-------------------------------------------DHQVRLYDTSAQRRPVMSFDFRETPIKAVA 265 (326)
Q Consensus 229 ~l~~~~~-------------------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~ 265 (326)
++++... .|.|..||+.++ +.+.++... .++....
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~-~~~~~g~ 483 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ-KAAWSVEHV-SPWNGGT 483 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT-EEEEEEEES-SSCCCCE
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC-cEEeecCCC-CCCcCcc
Confidence 6655432 278999999988 556666543 3344445
Q ss_pred ecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEE
Q 020454 266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (326)
Q Consensus 266 ~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 317 (326)
+...+..++.++.||.+++||.++++.+.++.........-+.|.++++.++
T Consensus 484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 6667889999999999999999999999998743122223455666775443
No 213
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.21 E-value=1.2e-07 Score=79.85 Aligned_cols=256 Identities=9% Similarity=0.005 Sum_probs=136.5
Q ss_pred eeeeeecC--cc---cEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe----------cCCcEEE
Q 020454 15 LRALTFDS--LG---LIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDI 79 (326)
Q Consensus 15 ~~l~~~~~--~G---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----------~dg~i~i 79 (326)
-++.+.+. .+ .|.++|..++ ++...+.....+ ...-++++++++++. .++.|.+
T Consensus 33 ~~~yv~~~~~~~~~~~v~v~D~~t~-----~~~~~i~~g~~p------~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 33 RRSYINLPAHHSAIIQQWVLDAGSG-----SILGHVNGGFLP------NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred CEEEEeCCcccCCccEEEEEECCCC-----eEEEEecCCCCC------CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence 34555553 33 7899998877 455444432222 122345666777775 3688999
Q ss_pred EeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec--CCcEEEEEccccccccc-c-------
Q 020454 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAE-S------- 149 (326)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~--~g~v~i~~~~~~~~~~~-~------- 149 (326)
||..+.+.+..+..-.......+ .....+.+.+ ++.++++++. ++.|.++| ........ .
T Consensus 102 iD~~t~~~~~~i~~~~~~~~~~g-~~p~~~~~sp--------DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~ 171 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPRFDVG-PYSWMNANTP--------NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYH 171 (373)
T ss_pred EECCCCcEEEEEECCCccccccC-CCccceEECC--------CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEE
Confidence 99988887766653100000001 1223455444 5667777764 57899998 65432111 0
Q ss_pred -------------ccceEEEEEccCCCceE----------------EEEEcCCCCEEEEecCCCeEEEEECCCcee--ee
Q 020454 150 -------------SCSTVKSWNVCASGTIA----------------FSKVDISEKFSLFGGKGVEVNVWDLDKCEK--IW 198 (326)
Q Consensus 150 -------------~~~~~~~~~~~~~~~v~----------------~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--~~ 198 (326)
.++.+..++. ....+. ...+.+++..++..+.++.+.+.|+..... +.
T Consensus 172 ~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~ 250 (373)
T 2mad_H 172 IHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA 250 (373)
T ss_pred EEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEee
Confidence 1122222222 111110 011222222222222455666666644321 11
Q ss_pred eecCCCCCCC-CcCCCCceeeeEEeecCCCcEEEEEeC----------CCeEEEEeCCCCCCceeEEeecCCceEEEEec
Q 020454 199 TAKPPPKNSL-GIFTPTWFTSAAFLSIDDHRKFVAGTN----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (326)
Q Consensus 199 ~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s 267 (326)
.+........ .-..+.....+.++| +++.+.+... .+.|.++|+.+. +.+.++... .....++|+
T Consensus 251 ~~~~~~~~~~~~~~~p~g~~~~~~s~--d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~-~vv~~i~~g-~~p~~i~~s 326 (373)
T 2mad_H 251 PIDALSGGRKADTWRPGGWQQVAYLK--SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-QTSSQISLG-HDVDAISVA 326 (373)
T ss_pred eeeecCCcccccceecCceEeEEECC--CCCEEEEEeccCCcccccCCCCeEEEEECCCC-EEEEEEECC-CCcCeEEEC
Confidence 1100000000 000122233366776 3445555432 358999999987 556777654 357899999
Q ss_pred CCCC-eEEEEc-CCCcEEEEECCCCeEEEEE
Q 020454 268 PDSF-NIYIGN-GSGDLASVDIRTGKLLGCF 296 (326)
Q Consensus 268 ~~~~-~l~~g~-~dg~v~iwd~~~~~~~~~~ 296 (326)
|||+ .++++. .++.|.+||+.+++.+.++
T Consensus 327 ~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 327 QDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 9999 777777 5899999999999998874
No 214
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.21 E-value=7.8e-09 Score=95.35 Aligned_cols=223 Identities=10% Similarity=-0.007 Sum_probs=134.6
Q ss_pred EeeeCCCCCeEEEEecC-----CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454 58 SIDDSQNDPLLAVARKN-----GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (326)
Q Consensus 58 ~~~~~~~~~~l~~g~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~ 132 (326)
...+++++++|+.++.+ ..|++||+.+++.+..... ...+.++.+.+ + ..|+.+..+
T Consensus 167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~---------~~~~~~~~wsp--------D-~~l~~~~~~ 228 (741)
T 1yr2_A 167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK---------WVKFSGLAWLG--------N-DALLYSRFA 228 (741)
T ss_dssp EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE---------EEESCCCEEST--------T-SEEEEEECC
T ss_pred eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC---------CceeccEEEEC--------C-CEEEEEEec
Confidence 34556777888887664 3599999998887543111 01123455544 5 667777665
Q ss_pred Cc--------------EEEEEccccccccccccceEEEEEccC-CCceEEEEEcCCCCEEEEecCC-----CeEEEEECC
Q 020454 133 GK--------------ASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKG-----VEVNVWDLD 192 (326)
Q Consensus 133 g~--------------v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d-----~~i~iwd~~ 192 (326)
+. |++|++.... .....++.... ...+..+.++|+|++|+..+.+ ..|.+||+.
T Consensus 229 ~~~~~~~~~~~~~~~~v~~~~lgt~~------~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~ 302 (741)
T 1yr2_A 229 EPKEGQAFQALNYNQTVWLHRLGTPQ------SADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT 302 (741)
T ss_dssp CC--------CCCCCEEEEEETTSCG------GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE
T ss_pred CcccccccccCCCCCEEEEEECCCCc------hhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC
Confidence 43 7777764322 11223444322 2247899999999988876644 389999998
Q ss_pred Cc--eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC----CCeEEEEeCCCCC-CceeEEeecCCceEEEE
Q 020454 193 KC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQR-RPVMSFDFRETPIKAVA 265 (326)
Q Consensus 193 ~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~----dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~ 265 (326)
++ +....+.... ..+... +.| ++..|+..+. ++.|.+||+.... .....+..+...+..++
T Consensus 303 ~~~~~~~~~l~~~~---------~~~~~~-~~~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~ 370 (741)
T 1yr2_A 303 NGKIGPVTALIPDL---------KAQWDF-VDG--VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVG 370 (741)
T ss_dssp TTEECCCEEEECSS---------SSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE
T ss_pred CCCCcccEEecCCC---------CceEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEE
Confidence 76 3123332221 112222 235 3446666654 4569999987641 22222334445566778
Q ss_pred ecCCCCeEEEEcCCCcEEEEECC-CCeEEEEEcceecceEEEEEECCCCCEEE
Q 020454 266 EEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (326)
Q Consensus 266 ~s~~~~~l~~g~~dg~v~iwd~~-~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 317 (326)
|+ ++.++++...|+..+||.+. +++....+..+..+.|..+.++|+++.|+
T Consensus 371 ~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 422 (741)
T 1yr2_A 371 IA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAY 422 (741)
T ss_dssp EE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred EE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEE
Confidence 86 55677788889887777554 45666666542267789999999887554
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.17 E-value=7.9e-09 Score=84.72 Aligned_cols=214 Identities=10% Similarity=0.024 Sum_probs=133.0
Q ss_pred eCCCCC-eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec-CCcEEEE
Q 020454 61 DSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMR 138 (326)
Q Consensus 61 ~~~~~~-~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~-~g~v~i~ 138 (326)
+.+.++ +++++..++.|..|+. +++. ..+.. ....+.++.+.+ ++.++++.. ++.|..|
T Consensus 52 ~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~--------~~~~~~gl~~d~---------dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 52 WWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLD--------ATAFTNGNAVDA---------QQRLVHCEHGRRAITRS 112 (305)
T ss_dssp EEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEE--------SCSCEEEEEECT---------TSCEEEEETTTTEEEEE
T ss_pred EeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeC--------CCCccceeeECC---------CCCEEEEECCCCEEEEE
Confidence 334444 6777888899999998 5553 33321 124566676533 334555554 4778888
Q ss_pred EccccccccccccceEEEEEc----cCCCceEEEEEcCCCCEEEE----ecC-------------CCeEEEEECCCceee
Q 020454 139 SIEVTKVSAESSCSTVKSWNV----CASGTIAFSKVDISEKFSLF----GGK-------------GVEVNVWDLDKCEKI 197 (326)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s----g~~-------------d~~i~iwd~~~~~~~ 197 (326)
+.+. .+..+.. .....+..+.++++|++.++ |.. .+.|..||..+++..
T Consensus 113 ~~~g----------~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~ 182 (305)
T 3dr2_A 113 DADG----------QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ 182 (305)
T ss_dssp CTTS----------CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE
T ss_pred CCCC----------CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE
Confidence 7531 1221111 11234667999999998886 432 246777877665543
Q ss_pred eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC------CeEEEEeCCCCCCceeE---E-eecCCceEEEEec
Q 020454 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRLYDTSAQRRPVMS---F-DFRETPIKAVAEE 267 (326)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~---~-~~~~~~i~~v~~s 267 (326)
... .. .....++|+| +++.|+.+... +.|.+||+.... +.. + .........++++
T Consensus 183 ~~~-~~----------~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d 247 (305)
T 3dr2_A 183 RMA-DL----------DHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVD 247 (305)
T ss_dssp EEE-EE----------SSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEEC
T ss_pred EEe-cC----------CCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEEC
Confidence 322 10 2356789988 55566666544 789999987542 211 1 1123345678999
Q ss_pred CCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454 268 PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 268 ~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
++|+ |.+++.+ .|.+|+. +++.+..+..+ . .+.+++|.|+++.|+.++.++
T Consensus 248 ~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~-~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 248 RGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTP-G-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp TTSC-EEECCSS-EEEEECT-TSCEEEEEECS-S-CCCEEEECTTSCEEEEEETTE
T ss_pred CCCC-EEEecCC-cEEEECC-CCCEEEEEECC-C-ceeEEEEeCCCCEEEEEcCCe
Confidence 9998 5555555 4999998 57777777754 4 688999999988888776655
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.16 E-value=1.9e-08 Score=84.03 Aligned_cols=251 Identities=9% Similarity=0.086 Sum_probs=147.7
Q ss_pred CcccEEEEEecCCcCCCcceeeeccCCC--------CCceEEEEEeeeCCCCCeEEEEec--CCcEEEEeccccceeeee
Q 020454 22 SLGLIKVIEARGEHGGVPKVVERWGDPH--------SSNCVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDLRVAI 91 (326)
Q Consensus 22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~g~~--dg~i~i~~~~~~~~~~~~ 91 (326)
.++.|.+||..+. ++...+.-+. .+.. +.-++++++++++.. ++.|.++|+.+++.+..+
T Consensus 107 ~~~~VsviD~~t~-----~v~~~I~v~~g~r~~~g~~P~~-----~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI 176 (386)
T 3sjl_D 107 RTDYVEVFDPVTL-----LPTADIELPDAPRFLVGTYPWM-----TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML 176 (386)
T ss_dssp EEEEEEEECTTTC-----CEEEEEEETTCCCCCBSCCGGG-----EEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCC-----eEEEEEECCCccccccCCCCce-----EEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 4678999999876 4443332111 1111 123456677888764 689999999999998887
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceE-EEEE
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA-FSKV 170 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~ 170 (326)
.. . ....+ ++. ....+++.+.||.+.+.++........ .....++.. ..++. ...|
T Consensus 177 ~v-------~---g~~~~--~P~-------g~~~~~~~~~DG~~~~v~~~~~g~v~~---~~~~~~~~~-~~~~~~~~~~ 233 (386)
T 3sjl_D 177 DV-------P---DCYHI--FPT-------APDTFFMHCRDGSLAKVAFGTEGTPEI---THTEVFHPE-DEFLINHPAY 233 (386)
T ss_dssp EC-------C---SEEEE--EEE-------ETTEEEEEETTSCEEEEECCSSSCCEE---EECCCCSCT-TSCBCSCCEE
T ss_pred EC-------C---Cccee--ecC-------CCceeEEECCCCCEEEEECCCCCeEEE---eecceeccc-ccccccccee
Confidence 64 1 11111 221 234677888899998888765332210 000111111 12222 2344
Q ss_pred -cCCCCEEEEecCCCeEEEEECCCcee--eeeecCCCCCCC-CcCCCCceeeeEEeecCCCcEEEEEeC----------C
Q 020454 171 -DISEKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSL-GIFTPTWFTSAAFLSIDDHRKFVAGTN----------D 236 (326)
Q Consensus 171 -~~~~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~~l~~~~~----------d 236 (326)
.+++++++ .+.++.|.+.|+.+... .....-...... .-..+.....++++| +++.+++... .
T Consensus 234 ~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~--~~~~lyV~~~~~~~~~hk~~~ 310 (386)
T 3sjl_D 234 SQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR--ALDRIYLLVDQRDEWRHKTAS 310 (386)
T ss_dssp ETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET--TTTEEEEEEEECCTTCTTSCE
T ss_pred EcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC--CCCeEEEEeccccccccCCCC
Confidence 35676555 45589999999976542 222110000000 000112233456666 3445555432 2
Q ss_pred CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCC-eEEEE-cCCCcEEEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIG-NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~g-~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~ 312 (326)
+.|-++|+.+. +.+..+... ..+..+++++|++ +|++. ..++.|.++|..+++.+.+++. .+.-+.|.+++|
T Consensus 311 ~~V~viD~~t~-kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~--~~~p~~l~~s~d 384 (386)
T 3sjl_D 311 RFVVVLDAKTG-ERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ--LGHGPQVITTAD 384 (386)
T ss_dssp EEEEEEETTTC-CEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC--CCSSCCEEEECC
T ss_pred CEEEEEECCCC-eEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC--CCCCceeEECCc
Confidence 57999999987 567777665 4678999999996 67765 4589999999999999999874 334445555554
No 217
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.14 E-value=6.7e-09 Score=95.08 Aligned_cols=188 Identities=9% Similarity=-0.049 Sum_probs=116.8
Q ss_pred CeeeeecccccccccCCCCceEEE-----EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEE
Q 020454 105 GIVGLHLFKRQREESSSRSRTLLT-----CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179 (326)
Q Consensus 105 ~i~~l~~~~~~~~~~~~~~~~l~~-----~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 179 (326)
.+.+..+.+ ++..|+. ++.+..|++||+....... ... . .......++|+|+++.|+.
T Consensus 122 ~~~~~~~SP--------DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~-----~-~~~~~~~~~wspDg~~l~~ 184 (695)
T 2bkl_A 122 SLGTWAVSW--------DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---VDV-----I-EGGKYATPKWTPDSKGFYY 184 (695)
T ss_dssp EEEEEEECT--------TSSEEEEEEEETTCSCCEEEEEETTTCCBCS---SCC-----B-SCCTTCCCEECTTSSEEEE
T ss_pred EEEEEEECC--------CCCEEEEEECCCCCceEEEEEEECCCCCCcC---Ccc-----c-CcccccceEEecCCCEEEE
Confidence 455566544 4555552 2334578999987644210 000 0 0111257899999999998
Q ss_pred ecCCCe-------------EEEEECCCce----eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC----e
Q 020454 180 GGKGVE-------------VNVWDLDKCE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----Q 238 (326)
Q Consensus 180 g~~d~~-------------i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg----~ 238 (326)
++.|.. |++|++.++. .++.... ++.++.++.|+| ++++|+..+.++ .
T Consensus 185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~---------~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~ 253 (695)
T 2bkl_A 185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG---------DPTTFLQSDLSR--DGKYLFVYILRGWSEND 253 (695)
T ss_dssp EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC---------CTTCEEEEEECT--TSCCEEEEEEETTTEEE
T ss_pred EEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC---------CCEEEEEEEECC--CCCEEEEEEeCCCCceE
Confidence 888766 9999998765 2222221 124577889998 566777766555 6
Q ss_pred EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc---CCCcEEEEECCCCeE---EEEEcceecceEEEEEECCC
Q 020454 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKL---LGCFIGKCSGSIRSIARHPT 312 (326)
Q Consensus 239 v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~---~dg~v~iwd~~~~~~---~~~~~~~~~~~v~~l~~~p~ 312 (326)
|++||...+ ....+..+...+....+ ++|.+++.+. .++.|.+||+.+++. ...+..+....+..++|+ +
T Consensus 254 l~~~~~~~~--~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~ 329 (695)
T 2bkl_A 254 VYWKRPGEK--DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G 329 (695)
T ss_dssp EEEECTTCS--SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T
T ss_pred EEEEcCCCC--ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C
Confidence 777766543 24555555556666666 5666444444 257899999987653 333332214468888988 6
Q ss_pred CCEEEEeccCcc
Q 020454 313 LPIIASCGFLEA 324 (326)
Q Consensus 313 ~~~l~s~s~D~~ 324 (326)
+.++++...|+.
T Consensus 330 ~~lv~~~~~dg~ 341 (695)
T 2bkl_A 330 GHLSLEYLKDAT 341 (695)
T ss_dssp TEEEEEEEETTE
T ss_pred CEEEEEEEECCE
Confidence 778888887764
No 218
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.13 E-value=9.7e-08 Score=80.61 Aligned_cols=230 Identities=10% Similarity=0.057 Sum_probs=134.7
Q ss_pred CCCe-EEEEecCCcEEEEecccc----ceeeeecccCCCCCC--CCCCCeeeeecccccccccCCCCceEEEEecC----
Q 020454 64 NDPL-LAVARKNGLTDILNPLNG----DLRVAISNAGDSGAQ--PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---- 132 (326)
Q Consensus 64 ~~~~-l~~g~~dg~i~i~~~~~~----~~~~~~~~~~~~~~~--~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~---- 132 (326)
+.++ ++.+..+++|.++|+.+. ++.+.+.. .+.. .+......++..+ + +.++++..+
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~---~~~~~~~g~s~Ph~~~~~p--------d-Gi~Vs~~g~~~g~ 161 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEP---EEVKKVSGYSRLHTVHCGP--------D-AIYISALGNEEGE 161 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECH---HHHHHHHCEEEEEEEEECS--------S-CEEEEEEEETTSC
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeech---hhcccccCCCcccceeECC--------C-eEEEEcCCCcCCC
Confidence 3444 455677899999998654 34343310 0000 0001122233222 3 366665555
Q ss_pred --CcEEEEEccccccccccccceEEEEEccCCC--ceEEEEEcCCCCEEEEec-------------------CCCeEEEE
Q 020454 133 --GKASMRSIEVTKVSAESSCSTVKSWNVCASG--TIAFSKVDISEKFSLFGG-------------------KGVEVNVW 189 (326)
Q Consensus 133 --g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~sg~-------------------~d~~i~iw 189 (326)
|.+.++|.+..+ .+..|...... .-+.+.++|+++.+++.. .+.+|.+|
T Consensus 162 ~~g~v~vlD~~T~~--------v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~ 233 (462)
T 2ece_A 162 GPGGILMLDHYSFE--------PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW 233 (462)
T ss_dssp SCCEEEEECTTTCC--------EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred CCCeEEEEECCCCe--------EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence 678888866544 56666643222 244578899999988874 36899999
Q ss_pred ECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe------CCCeEEEEeCCCCC-CceeEEe--e----
Q 020454 190 DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT------NDHQVRLYDTSAQR-RPVMSFD--F---- 256 (326)
Q Consensus 190 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~------~dg~v~iwd~~~~~-~~~~~~~--~---- 256 (326)
|+.+++.+.++...... .....+.|..+++++++.+++ .+++|.+|....+. ...+.+. .
T Consensus 234 D~~~~k~~~tI~vg~~g-------~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~ 306 (462)
T 2ece_A 234 DLRKRKRIHSLTLGEEN-------RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE 306 (462)
T ss_dssp ETTTTEEEEEEESCTTE-------EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred ECCCCcEeeEEecCCCC-------CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence 99988766654432110 123355562233565666555 56788776544220 0011110 0
Q ss_pred ------------cCCceEEEEecCCCCeEEEEcC-CCcEEEEECCC---CeEEEEEcce-------------ecceEEEE
Q 020454 257 ------------RETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT---GKLLGCFIGK-------------CSGSIRSI 307 (326)
Q Consensus 257 ------------~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~---~~~~~~~~~~-------------~~~~v~~l 307 (326)
.......+.+|+||++|+++.. .+.|.+||+.. .+++..+... ..+.-+.+
T Consensus 307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~ 386 (462)
T 2ece_A 307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQML 386 (462)
T ss_dssp SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCE
T ss_pred ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEE
Confidence 0245788999999999997765 68899999863 4566555421 00135789
Q ss_pred EECCCCCEEEEec
Q 020454 308 ARHPTLPIIASCG 320 (326)
Q Consensus 308 ~~~p~~~~l~s~s 320 (326)
+++|++++|+.+.
T Consensus 387 ~lSpDGk~LyVaN 399 (462)
T 2ece_A 387 EISRDGRRVYVTN 399 (462)
T ss_dssp EECTTSSEEEEEC
T ss_pred EEcCCCCEEEEEc
Confidence 9999999888776
No 219
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.11 E-value=2.3e-07 Score=76.02 Aligned_cols=118 Identities=9% Similarity=0.027 Sum_probs=80.0
Q ss_pred ceEEEEEc----CCCCEE-EEecCCCeEEEEECC-Cceee--eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC
Q 020454 164 TIAFSKVD----ISEKFS-LFGGKGVEVNVWDLD-KCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN 235 (326)
Q Consensus 164 ~v~~~~~~----~~~~~l-~sg~~d~~i~iwd~~-~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~ 235 (326)
....++++ ++++.| ++...++.|.+||+. +++.. ......... ....+..+++.+ +++++++...
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-----~~~~p~~i~~d~--~G~l~v~~~~ 245 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT-----HEGGADGMDFDE--DNNLLVANWG 245 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC-----SSCEEEEEEEBT--TCCEEEEEET
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC-----CCCCCCceEECC--CCCEEEEEcC
Confidence 46788899 998655 444667899999986 33321 011111100 002356778876 5667777778
Q ss_pred CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCC
Q 020454 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRT 289 (326)
Q Consensus 236 dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~ 289 (326)
++.|.+||..++ +.+..+..+...+.+++|+|+++.|+ +...++.|..|++..
T Consensus 246 ~~~i~~~d~~~g-~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 SSHIEVFGPDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEECTTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEcCCCC-cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 899999999855 34556666667899999999999665 445668899999874
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.10 E-value=6.2e-08 Score=82.37 Aligned_cols=238 Identities=9% Similarity=0.060 Sum_probs=143.1
Q ss_pred CcccEEEEEecCCcCCCcceeeeccCC--------CCCceEEEEEeeeCCCCCeEEEEec--CCcEEEEeccccceeeee
Q 020454 22 SLGLIKVIEARGEHGGVPKVVERWGDP--------HSSNCVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDLRVAI 91 (326)
Q Consensus 22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~g~~--dg~i~i~~~~~~~~~~~~ 91 (326)
.++.|.++|..+. ++.....-+ ..+. .+.-++++++|+++.. ++.|.++|+.+++.+..+
T Consensus 147 ~~~~VsviD~~t~-----~vv~~I~v~g~~r~~~g~~P~-----~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I 216 (426)
T 3c75_H 147 RTDYVEVFDPVTF-----LPIADIELPDAPRFLVGTYQW-----MNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRML 216 (426)
T ss_dssp EEEEEEEECTTTC-----CEEEEEEETTCCCCCBSCCGG-----GSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCC-----cEEEEEECCCccccccCCCcc-----eEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEE
Confidence 4678999998876 443332211 1111 1223566778888764 588999999999988877
Q ss_pred cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 171 (326)
.. .....+ ++. ....+++.+.||.+.+.+..... ..... . ..++.........+.+.
T Consensus 217 ~v----------~g~~~~--~p~-------g~~~~v~~~~dG~~~~V~~~~~~-v~~~~--~-~~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 217 DV----------PDCYHI--FPA-------SPTVFYMNCRDGSLARVDFADGE-TKVTN--T-EVFHTEDELLINHPAFS 273 (426)
T ss_dssp EC----------CSEEEE--EEE-------ETTEEEEEETTSSEEEEECCTTC-CEEEE--C-CCCSCTTSCBCSCCEEC
T ss_pred Ec----------CCceee--ccC-------CCcEEEEEcCCCCEEEEECCCCc-EEEEe--e-eeeccCCCceeeEeeec
Confidence 64 111112 111 12467778889998888873222 11000 0 12222221112235678
Q ss_pred CCCCEEEEecCCCeEEEEECCCceeee--eecCCCCCCCCc-CCCCceeeeEEeecCCCcEEEEEe----------CCCe
Q 020454 172 ISEKFSLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGI-FTPTWFTSAAFLSIDDHRKFVAGT----------NDHQ 238 (326)
Q Consensus 172 ~~~~~l~sg~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~~l~~~~----------~dg~ 238 (326)
++++.++.....+.+.+.|+....... ............ ..+.....++++|. ++++++.. ..+.
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d--g~rlyVa~~~~~~gthk~~s~~ 351 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ--SDRIYLLVDQRDEWKHKAASRF 351 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG--GTEEEEEEEECCTTCTTSCEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC--CCEEEEEecccccccccCCCCE
Confidence 888766666778899999987554321 111000000000 01112223678874 33444442 2458
Q ss_pred EEEEeCCCCCCceeEEeecCCceEEEEecCCCC-eEEEEc-CCCcEEEEECCCCeEEEEE
Q 020454 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGN-GSGDLASVDIRTGKLLGCF 296 (326)
Q Consensus 239 v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~g~-~dg~v~iwd~~~~~~~~~~ 296 (326)
|.++|+.+. +.+.++.... ....++|+|||+ ++++.. .++.|.++|+.+++.+.++
T Consensus 352 VsVID~~T~-kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 352 VVVLNAETG-ERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEETTTC-CEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEECCCC-eEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999999987 6677776553 578899999999 888877 5899999999999999887
No 221
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.07 E-value=2.2e-11 Score=102.74 Aligned_cols=173 Identities=10% Similarity=-0.014 Sum_probs=92.5
Q ss_pred CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 201 (326)
.++.+++++.||.++.||....+ .+|.... ..+.+..+..++..+++++.|+.|+.||.++++.++...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~----------~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS----------IKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC----------EEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred eCCEEEEEcCCCEEEEEECCCCC----------EEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence 46789999999999999965433 2355443 445444455667788888899999999999988776654
Q ss_pred CCCCCCCCcCCCCcee-eeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC
Q 020454 202 PPPKNSLGIFTPTWFT-SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (326)
Q Consensus 202 ~~~~~~~~~~~~~~v~-~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg 280 (326)
..... .+. +..+. .+..+++++.++.|+.||.+++ +.+..+..+. ...++|++..+++++.++
T Consensus 77 ~~~~~--------~~~~sp~~~---~~~~v~~g~~dg~v~a~D~~tG-~~~w~~~~~~----~~~~~p~~~~v~~~~~dg 140 (369)
T 2hz6_A 77 FTIPE--------LVQASPCRS---SDGILYMGKKQDIWYVIDLLTG-EKQQTLSSAF----ADSLSPSTSLLYLGRTEY 140 (369)
T ss_dssp CCHHH--------HHTTCSCC--------CCCCEEEEEEEEECCC---------------------------EEEEEEEE
T ss_pred ccCcc--------ccccCceEe---cCCEEEEEeCCCEEEEEECCCC-cEEEEecCCC----cccccccCCEEEEEecCC
Confidence 32110 000 00111 2236788888999999999988 4456655442 234567888999999999
Q ss_pred cEEEEECCCCeEEEEEcceecceEEEEEECCCC---CEEEEeccCcc
Q 020454 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL---PIIASCGFLEA 324 (326)
Q Consensus 281 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~---~~l~s~s~D~~ 324 (326)
.|+.||.++|+.+.++..+ .....++.++. ..++.++.||.
T Consensus 141 ~v~a~d~~tG~~~W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~ 184 (369)
T 2hz6_A 141 TITMYDTKTRELRWNATYF---DYAASLPEDDVDYKMSHFVSNGDGL 184 (369)
T ss_dssp EEECCCSSSSSCCCEEEEE---EECCBCCCCCTTCCCCEEEEETSCE
T ss_pred EEEEEECCCCCEEEeEecc---cccCccccCCccccceEEEECCCCE
Confidence 9999999999887666532 12233343321 44566666664
No 222
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.07 E-value=6.6e-07 Score=76.35 Aligned_cols=235 Identities=9% Similarity=-0.023 Sum_probs=135.4
Q ss_pred eeeec-CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCC--cEEEEeccccceeeeecc
Q 020454 17 ALTFD-SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNG--LTDILNPLNGDLRVAISN 93 (326)
Q Consensus 17 l~~~~-~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg--~i~i~~~~~~~~~~~~~~ 93 (326)
|...+ .++.|++|+..++ .+.......... . + ..+..++.|+++..++ .|.+|+...+.....+..
T Consensus 144 lyv~d~~~~~I~~id~~~g-----~~~~~~~~~~~~-~---i--a~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~ 212 (409)
T 3hrp_A 144 VLAYQRDDPRVRLISVDDN-----KVTTVHPGFKGG-K---P--AVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ 212 (409)
T ss_dssp EEEEETTTTEEEEEETTTT-----EEEEEEETCCBC-B---C--EECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE
T ss_pred EEEEecCCCcEEEEECCCC-----EEEEeeccCCCC-c---e--eEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee
Confidence 44443 4577888887765 332222221111 1 2 2344555788887766 788888865544333311
Q ss_pred cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEE----EccCCCc--eEE
Q 020454 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW----NVCASGT--IAF 167 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~--v~~ 167 (326)
... .....+.++++.+ .++.|+.+..++.|+.|+.+... ..++ ....... ...
T Consensus 213 ~~~----~~~~~p~~iav~p--------~~g~lyv~d~~~~I~~~d~~~~~---------~~~~~~~~~~g~~~~~P~~~ 271 (409)
T 3hrp_A 213 LGS----TFSGKIGAVALDE--------TEEWLYFVDSNKNFGRFNVKTQE---------VTLIKQLELSGSLGTNPGPY 271 (409)
T ss_dssp CCT----TSCSCCCBCEECT--------TSSEEEEECTTCEEEEEETTTCC---------EEEEEECCCCSCCCCSSCCE
T ss_pred ccc----hhcCCcEEEEEeC--------CCCeEEEEECCCcEEEEECCCCC---------EEEEecccccCCCCCCcccc
Confidence 100 0123455566533 35677777778888888865432 1222 1111111 128
Q ss_pred EEEcCC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC----cCCCCceeeeEEeecCCCcEEEEEe-CCCeEEE
Q 020454 168 SKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG----IFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRL 241 (326)
Q Consensus 168 ~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~~l~~~~-~dg~v~i 241 (326)
++++|+ +.++++-..++.|+.|+.........-......... ...-.+...+++.| +++++++-+ .++.|+.
T Consensus 272 ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~--dG~lyvad~~~~~~I~~ 349 (409)
T 3hrp_A 272 LIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDE--DGNFYIVDGFKGYCLRK 349 (409)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT--TCCEEEEETTTTCEEEE
T ss_pred EEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC--CCCEEEEeCCCCCEEEE
Confidence 999995 566666677889999997654222211110000000 00113567889987 566777877 8999999
Q ss_pred EeCCCCCCceeEEeec---------------CCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454 242 YDTSAQRRPVMSFDFR---------------ETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (326)
Q Consensus 242 wd~~~~~~~~~~~~~~---------------~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~ 287 (326)
||+..+ . +..+..+ -.....++++++|.++++-..++.|+.+++
T Consensus 350 ~~~~~G-~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 350 LDILDG-Y-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EETTTT-E-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EECCCC-E-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 997655 2 4444443 135788999999877777778888888775
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.07 E-value=1.4e-07 Score=78.90 Aligned_cols=259 Identities=10% Similarity=0.010 Sum_probs=139.1
Q ss_pred cEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe----------cCCcEEEEeccccceeeeeccc
Q 020454 25 LIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 25 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----------~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
.|.|.|..+. ++..++.-...+ . +. -++++++++++. .++.|.+||+.+++.+..+..-
T Consensus 47 ~vsvID~~t~-----~v~~~i~vG~~P-~-i~----~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~ 115 (368)
T 1mda_H 47 ENWVSCAGCG-----VTLGHSLGAFLS-L-AV----AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP 115 (368)
T ss_dssp EEEEEETTTT-----EEEEEEEECTTC-E-EE----ECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred eEEEEECCCC-----eEEEEEeCCCCC-c-eE----ECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence 7889998877 666666544443 2 22 234555677775 4789999999999998887641
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEec--CCcEEE--EEcccccc-----------------ccccccce
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASM--RSIEVTKV-----------------SAESSCST 153 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~--~g~v~i--~~~~~~~~-----------------~~~~~~~~ 153 (326)
.....+.. ....++.+.+ ++..++++.. +..+.+ +|...... .....++.
T Consensus 116 ~~~~~~~g-~~P~~ia~Sp--------DGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~ 186 (368)
T 1mda_H 116 DAPRFSVG-PRVHIIGNCA--------SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPAS 186 (368)
T ss_dssp TSCSCCBS-CCTTSEEECT--------TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTS
T ss_pred CccccccC-CCcceEEEcC--------CCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCC
Confidence 00000000 1123355433 5567777764 456777 66543000 00111222
Q ss_pred EEEEEccC----CCceE------------EEEEcCCCCEEEEecCCCeEEEEECCCcee--eeeecCCCCC-CCCcCCCC
Q 020454 154 VKSWNVCA----SGTIA------------FSKVDISEKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKN-SLGIFTPT 214 (326)
Q Consensus 154 ~~~~~~~~----~~~v~------------~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~~~~-~~~~~~~~ 214 (326)
+...+... .+.+. -.. .+++..++..+. +.+.+.|+..... +......... ...-..+.
T Consensus 187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~ 264 (368)
T 1mda_H 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSA 264 (368)
T ss_dssp CEEEECCSSCCCCEECCCCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred EEEEECccccccCCeEEEEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccC
Confidence 22222221 00000 001 333433334444 6777777754321 1111100000 00000011
Q ss_pred ceeeeEEeecCCCcEEEEE-e---C-----CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeE-EEEc-CCCcEE
Q 020454 215 WFTSAAFLSIDDHRKFVAG-T---N-----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI-YIGN-GSGDLA 283 (326)
Q Consensus 215 ~v~~~~~~p~~~~~~l~~~-~---~-----dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l-~~g~-~dg~v~ 283 (326)
....+.++| +++.++++ . . ++.+.++|+.+. +.+..+.... ....++|+|||+++ ++.. .++.|.
T Consensus 265 g~~~v~~s~--dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~-~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 265 GFQMVAKLK--NTDGIMILTVEHSRSCLAAAENTSSVTASVG-QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp SSSCEEEET--TTTEEEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEE
T ss_pred cceeeEEcC--CCCEEEEEeccccCcccccCCCEEEEECCCC-eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEE
Confidence 112257877 44455554 3 2 235669999987 5577776553 57889999999854 4555 589999
Q ss_pred EEECCCCeEEEEEcceecceEEEEEECC
Q 020454 284 SVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (326)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~l~~~p 311 (326)
++|+.+++.+.+++.. .....|++.+
T Consensus 341 VID~~t~kvv~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 341 IYDAASDQDQSSVELD--KGPESLSVQN 366 (368)
T ss_dssp EEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred EEECCCCcEEEEEECC--CCCCEEEeec
Confidence 9999999999998843 3455666654
No 224
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.06 E-value=9.3e-08 Score=78.97 Aligned_cols=210 Identities=11% Similarity=0.035 Sum_probs=133.2
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
+..+.+++.++.|..+|.. ++....... ....+..+... .++.++.++.++.+..++.. ..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~--------~~~~~~~~~~~---------~~g~l~vgt~~~~l~~~d~~-g~ 167 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKT--------KKAIYATPIVS---------EDGTIYVGSNDNYLYAINPD-GT 167 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEEC--------SSCCCSCCEEC---------TTSCEEEECTTSEEEEECTT-SC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcC--------CCceeeeeEEc---------CCCEEEEEcCCCEEEEECCC-CC
Confidence 3458889889999999987 665444432 11222323221 25678888888998888854 21
Q ss_pred cccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 224 (326)
.+..+.. ....+.++...+++.+.+ ++ +.|..+| .+++..+...... ..+.++...+
T Consensus 168 --------~~~~~~~-~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~---------~~~~~~~~~~- 224 (330)
T 3hxj_A 168 --------EKWRFKT-NDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGY---------WTVTRPAISE- 224 (330)
T ss_dssp --------EEEEEEC-SSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSS---------CCCSCCEECT-
T ss_pred --------EeEEEec-CCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCC---------cceeceEECC-
Confidence 2222222 133456666777777554 44 7899999 7777766654322 2244555543
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceE
Q 020454 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI 304 (326)
Q Consensus 225 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v 304 (326)
++ .+..++.++.+..+|.. + ..+..+......+..+.+.+++ .|++++.+|.|..+|. +++.+..+... ...+
T Consensus 225 -~g-~l~v~t~~~gl~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~-~~~~ 297 (330)
T 3hxj_A 225 -DG-TIYVTSLDGHLYAINPD-G-TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG-SWII 297 (330)
T ss_dssp -TS-CEEEEETTTEEEEECTT-S-CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS-SCCC
T ss_pred -CC-eEEEEcCCCeEEEECCC-C-CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC-Cccc
Confidence 44 56777778888888854 3 3455555544444555665555 6778888999999996 77777776654 5667
Q ss_pred EEEEECCCCCEEEEeccCcc
Q 020454 305 RSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 305 ~~l~~~p~~~~l~s~s~D~~ 324 (326)
.++...+++.+ ..++.+|.
T Consensus 298 ~~~~~d~~g~l-~~gt~~G~ 316 (330)
T 3hxj_A 298 ATPVIDENGTI-YFGTRNGK 316 (330)
T ss_dssp SCCEECTTCCE-EEECTTSC
T ss_pred cceEEcCCCEE-EEEcCCCe
Confidence 78888788764 45667765
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.06 E-value=8.8e-08 Score=80.85 Aligned_cols=231 Identities=12% Similarity=0.089 Sum_probs=130.9
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-++++++.+|.|..+|..++ ++.-++...........+ .+..+++++.+|.|..+|..+++.+..+...
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG-----~~~W~~~~~~~~~~~p~~------~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~ 172 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDG-----TVAWQTKVAGEALSRPVV------SDGLVLIHTSNGQLQALNEADGAVKWTVNLD 172 (376)
T ss_dssp TEEEEEETTSEEEEEETTTC-----CEEEEEECSSCCCSCCEE------ETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEEcCCCEEEEEECCCC-----CEEEEEeCCCceEcCCEE------ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence 46788888999999999877 442222221111110011 1236888999999999999999877665531
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc-----------------------------
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----------------------------- 145 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~----------------------------- 145 (326)
.+.. .. ........ .++.+++++.+|.+..++......
T Consensus 173 ~~~~--~~-~~~~~~~~----------~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~ 239 (376)
T 3q7m_A 173 MPSL--SL-RGESAPTT----------AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN 239 (376)
T ss_dssp C--------CCCCCCEE----------ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET
T ss_pred CCce--ee-cCCCCcEE----------ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC
Confidence 1000 00 00000111 224555566666665555432111
Q ss_pred ---ccccccceEEEEEccCCCc--------eEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCC
Q 020454 146 ---SAESSCSTVKSWNVCASGT--------IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT 214 (326)
Q Consensus 146 ---~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 214 (326)
..+..++.+..++...... ...+.. ++..++.++.++.|..+|..+++.++.........
T Consensus 240 ~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~------- 310 (376)
T 3q7m_A 240 GVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRL------- 310 (376)
T ss_dssp TEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSC-------
T ss_pred CEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCc-------
Confidence 0001123333444332222 222222 35667777889999999999999888765322111
Q ss_pred ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEE-EEecCCCCeEEEEcCCCcEEEEE
Q 020454 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVD 286 (326)
Q Consensus 215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~-v~~s~~~~~l~~g~~dg~v~iwd 286 (326)
+...... + ..++.++.+|.+..+|..++ +.+..+......+.. ... .+..|++++.+|.|+.||
T Consensus 311 -~~~~~~~---~-~~l~v~~~~g~l~~~d~~tG-~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 311 -LTSPVLY---N-GNLVVGDSEGYLHWINVEDG-RFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp -CCCCEEE---T-TEEEEECTTSEEEEEETTTC-CEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred -ccCCEEE---C-CEEEEEeCCCeEEEEECCCC-cEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 1122222 2 37888999999999999987 556666553333322 222 356888999999999987
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.06 E-value=4.3e-07 Score=75.67 Aligned_cols=239 Identities=7% Similarity=-0.042 Sum_probs=136.1
Q ss_pred CCCCeEEEEe--cCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------CCc
Q 020454 63 QNDPLLAVAR--KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGK 134 (326)
Q Consensus 63 ~~~~~l~~g~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------~g~ 134 (326)
++++++++.. .++.++||.+.++++ ..+...... ...+-..+.++.+.+ ++.|+.+.. ++.
T Consensus 26 ~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~-~~~~~~~p~gv~~d~---------~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 26 PDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGN-AIITFDTVLGIKSDG---------NGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp TTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSS-CCCCCSCEEEEEECS---------SSEEEEEECHHHHTSCCE
T ss_pred CCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccC-cccceeEeeEEEEcC---------CCcEEEEcCCCCcCCCCe
Confidence 3455566643 234356666544543 222211000 112334667777533 244555442 478
Q ss_pred EEEEEccccccccccccceEEEEEccC-----CCceEEEEEcCCCCEE-EEec---CCCeEEEEECCCceeeeeecCCCC
Q 020454 135 ASMRSIEVTKVSAESSCSTVKSWNVCA-----SGTIAFSKVDISEKFS-LFGG---KGVEVNVWDLDKCEKIWTAKPPPK 205 (326)
Q Consensus 135 v~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l-~sg~---~d~~i~iwd~~~~~~~~~~~~~~~ 205 (326)
|.+||+.... .++.+.... ...+..+++++++..+ ++-. .++.|.+||+.+++....+..+..
T Consensus 95 i~~~d~~tg~--------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 95 LVAWDTLNNQ--------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp EEEEETTTTE--------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred EEEEECCCCe--------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 8888875432 344555421 2346889999865444 4544 578999999988776554433211
Q ss_pred CC---CC-------cC----------CCCceeeeEEeecCCCcEEEEEeCCC-eEEEEeCCC---CC----Ccee--EEe
Q 020454 206 NS---LG-------IF----------TPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSA---QR----RPVM--SFD 255 (326)
Q Consensus 206 ~~---~~-------~~----------~~~~v~~~~~~p~~~~~~l~~~~~dg-~v~iwd~~~---~~----~~~~--~~~ 255 (326)
.. .. +. ....+..++|+| +++.|+.+..++ .+..++... .. +... ...
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~--dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (343)
T 2qe8_A 167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA--ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY 244 (343)
T ss_dssp TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT--TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE
T ss_pred ccccccceeECCEEEEeccCCCceeceecccceeEecc--CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec
Confidence 00 00 00 012367899988 565677666555 555555321 10 0000 111
Q ss_pred ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454 256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 256 ~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D 322 (326)
.+......++++++|+++++...++.|.+||..+++..............+++|.+++.++++.+..
T Consensus 245 g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 245 SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 3334567789999999888988999999999866765433332113468899999999887777643
No 227
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.05 E-value=3.7e-07 Score=82.94 Aligned_cols=274 Identities=13% Similarity=0.080 Sum_probs=158.3
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCc--------eE-EEEEeeeCCCCCeEEEEecCCcEEEEecccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSN--------CV-LAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~ 85 (326)
-++.+++.+|.|..+|..++ +..-++....... .+ -.... .+..+++++.|+.|..+|..+|
T Consensus 67 g~vyv~~~~~~v~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG 137 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASG-----KELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTG 137 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTC-----CEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTC
T ss_pred CEEEEECCCCeEEEEECCCC-----hhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCC
Confidence 45777778889999998877 4432222111100 00 00111 1236888999999999999999
Q ss_pred ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------CCcEEEEEccccccccccccceEEEEEc
Q 020454 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVSAESSCSTVKSWNV 159 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------~g~v~i~~~~~~~~~~~~~~~~~~~~~~ 159 (326)
+.+..+...... ....+.+.-.. .++.++++.. +|.|..+|....+. +|..
T Consensus 138 ~~~W~~~~~~~~----~~~~~~~~P~v---------~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~----------~W~~ 194 (668)
T 1kv9_A 138 KAIWSQQTTDPA----KPYSITGAPRV---------VKGKVIIGNGGAEYGVRGFVSAYDADTGKL----------AWRF 194 (668)
T ss_dssp CEEEEEECSCTT----SSCBCCSCCEE---------ETTEEEECCBCTTTCCBCEEEEEETTTCCE----------EEEE
T ss_pred CEeeeeccCCCC----CcceecCCCEE---------ECCEEEEeCCCCCcCCCCEEEEEECCCCcE----------EEEe
Confidence 988776642110 00111110000 2345665543 47777777654331 2221
Q ss_pred cC--------------------------------CCceEEEEEcCCCCEEEEecCCC-------------------eEEE
Q 020454 160 CA--------------------------------SGTIAFSKVDISEKFSLFGGKGV-------------------EVNV 188 (326)
Q Consensus 160 ~~--------------------------------~~~v~~~~~~~~~~~l~sg~~d~-------------------~i~i 188 (326)
.. ......++++|+.++++.+..++ .|..
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 10 01112467888888888887765 3999
Q ss_pred EECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc---EEEEEeCCCeEEEEeCCCCCCceeEEeecC-------
Q 020454 189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRE------- 258 (326)
Q Consensus 189 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------- 258 (326)
+|.++++.++..+....+.+............+.. +++ .++.++.+|.++++|..++ +.+.......
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~--~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~ 351 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI--DGKPRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVTWAEKV 351 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCCSEEEE
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEecc--CCcEEEEEEEECCCCEEEEEECCCC-CEecccccccccccccc
Confidence 99999999998775433333221111111111111 343 6888999999999999987 4443322111
Q ss_pred -----Cc------------------------eEEEEecCCCCeEEEE---------------------------------
Q 020454 259 -----TP------------------------IKAVAEEPDSFNIYIG--------------------------------- 276 (326)
Q Consensus 259 -----~~------------------------i~~v~~s~~~~~l~~g--------------------------------- 276 (326)
.+ -..++++|+...+++.
T Consensus 352 d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (668)
T 1kv9_A 352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDV 431 (668)
T ss_dssp CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCC
T ss_pred ccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCC
Confidence 00 0125777776665542
Q ss_pred ---cCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 277 ---NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 277 ---~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
..+|.|..||+.+++.+.+++. ..++....+...+.+|+.++.||.+
T Consensus 432 p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l 481 (668)
T 1kv9_A 432 PAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQM 481 (668)
T ss_dssp CGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred CCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEECCcccc
Confidence 1347899999999999877763 3344444444567788888888753
No 228
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.01 E-value=2e-07 Score=83.02 Aligned_cols=273 Identities=12% Similarity=0.122 Sum_probs=153.0
Q ss_pred eeeeeecC-cccEEEEEe-cCCcCCCcceeeeccCCCCCc-----e--E--EEEEeeeCCCCCeEEEEecCCcEEEEecc
Q 020454 15 LRALTFDS-LGLIKVIEA-RGEHGGVPKVVERWGDPHSSN-----C--V--LAASIDDSQNDPLLAVARKNGLTDILNPL 83 (326)
Q Consensus 15 ~~l~~~~~-~G~i~vw~~-~~~~~~~~~~~~~~~~~~~~~-----~--~--~~~~~~~~~~~~~l~~g~~dg~i~i~~~~ 83 (326)
-++.+++. +|.|.-+|. .++ +..-++....... + . ..... .+..+++++.|+.|..+|..
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~ 133 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPG-----KIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAK 133 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTT-----SEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETT
T ss_pred CEEEEEeCCCCEEEEEeCCCCc-----cEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECC
Confidence 45666676 788888888 766 3322222111100 0 0 00111 13368889999999999999
Q ss_pred ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------CCcEEEEEccccccccccccceEEEE
Q 020454 84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVSAESSCSTVKSW 157 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------~g~v~i~~~~~~~~~~~~~~~~~~~~ 157 (326)
+|+.+..+..-... ....+.+.-.. .++.+++++. +|.|..+|....+ .+|
T Consensus 134 tG~~~W~~~~~~~~----~~~~~~~~P~v---------~~g~v~vg~~~~~~~~~g~v~a~D~~tG~----------~~W 190 (571)
T 2ad6_A 134 TGKINWEVEVCDPK----VGSTLTQAPFV---------AKDTVLMGCSGAELGVRGAVNAFDLKTGE----------LKW 190 (571)
T ss_dssp TCCEEEEEECCCGG----GTCBCCSCCEE---------ETTEEEEECBCGGGTCCCEEEEEETTTCC----------EEE
T ss_pred CCCEEEEecCCCCC----ccceeccCCEE---------ECCEEEEEecCCccCCCCEEEEEECCCCc----------EEE
Confidence 99987766531100 00011100000 2346666665 6888888865433 122
Q ss_pred EccCCCc---------------------------------------eEEEEEcCCCCEEEEecCC---------------
Q 020454 158 NVCASGT---------------------------------------IAFSKVDISEKFSLFGGKG--------------- 183 (326)
Q Consensus 158 ~~~~~~~---------------------------------------v~~~~~~~~~~~l~sg~~d--------------- 183 (326)
+...... -..++++++...++.+..+
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 2211110 0135566666666655432
Q ss_pred -CeEEEEECCCceeeeeecCCCCCCCCcCCC-CceeeeEEeecCCC---cEEEEEeCCCeEEEEeCCCCCCceeEEeecC
Q 020454 184 -VEVNVWDLDKCEKIWTAKPPPKNSLGIFTP-TWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE 258 (326)
Q Consensus 184 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 258 (326)
+.|..+|.++++.++..+....+.+..... ..+. +...+ ++ +.++.++.+|.++++|..++ +.+..+....
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~--~G~~~~~v~~~~~~G~l~~lD~~tG-~~~w~~~~~~ 346 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV--NGKMTPLLSHIDRNGILYTLNRENG-NLIVAEKVDP 346 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE--TTEEEEEEEEECTTSEEEEEETTTC-CEEEEEESST
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc--CCcEEEEEEEeCCCcEEEEEECCCC-CEEeeecccC
Confidence 369999999999998876543322211110 1111 11111 45 35778889999999999887 5555544321
Q ss_pred -------------Cce--------------------------EEEEecCCCCeEEEEc----------------------
Q 020454 259 -------------TPI--------------------------KAVAEEPDSFNIYIGN---------------------- 277 (326)
Q Consensus 259 -------------~~i--------------------------~~v~~s~~~~~l~~g~---------------------- 277 (326)
.++ ..++++|+...+++..
T Consensus 347 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g 426 (571)
T 2ad6_A 347 AVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVG 426 (571)
T ss_dssp TCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred CccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccc
Confidence 111 2357788877777653
Q ss_pred ---------------CCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 278 ---------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 278 ---------------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.+|.|..||+.+++.+.+++. ..++.+..+...+..++.++.||.+
T Consensus 427 ~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~v~~g~~dg~l 487 (571)
T 2ad6_A 427 ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTKGGLVWYATLDGYL 487 (571)
T ss_dssp EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEE
T ss_pred ccceeccCccccCCCCCCeEEEEECCCCCEEEEecC--CCCccceeEEECCCEEEEEcCCCeE
Confidence 357899999999999877763 3333333333345667778777753
No 229
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.97 E-value=1.7e-06 Score=68.50 Aligned_cols=182 Identities=13% Similarity=0.024 Sum_probs=117.0
Q ss_pred eeeeecccccccccCCCCceEEEEec---CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC
Q 020454 106 IVGLHLFKRQREESSSRSRTLLTCTT---KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK 182 (326)
Q Consensus 106 i~~l~~~~~~~~~~~~~~~~l~~~~~---~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~ 182 (326)
..++.+.+ + +.|+.++. ++.|.++|+.... .++...+........++++. +++.++.-.
T Consensus 23 ~~Gl~~~~--------d-g~Lyvstg~~~~s~v~~iD~~tg~--------v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~ 84 (266)
T 2iwa_A 23 TQGLVYAE--------N-DTLFESTGLYGRSSVRQVALQTGK--------VENIHKMDDSYFGEGLTLLN-EKLYQVVWL 84 (266)
T ss_dssp EEEEEECS--------T-TEEEEEECSTTTCEEEEEETTTCC--------EEEEEECCTTCCEEEEEEET-TEEEEEETT
T ss_pred cccEEEeC--------C-CeEEEECCCCCCCEEEEEECCCCC--------EEEEEecCCCcceEEEEEeC-CEEEEEEec
Confidence 46777633 2 46666543 5789999976544 34444443333344566653 344455567
Q ss_pred CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC----
Q 020454 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---- 258 (326)
Q Consensus 183 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---- 258 (326)
++.+.++|..+.+.+..+...... ...+.+ +++.++++..+++|.++|+.+. +.+..+....
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g~~~-----------g~glt~--Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~~p 150 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQMKD-----------GWGLAT--DGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNGHR 150 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECCSSS-----------CCEEEE--CSSSEEEECSSSEEEEECTTTC-CEEEEEECEETTEE
T ss_pred CCEEEEEECCCCcEEEEEECCCCC-----------eEEEEE--CCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCCcc
Confidence 889999999999888776532111 123445 3445666667899999999987 5566665332
Q ss_pred -CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce-ec-----------ceEEEEEECCCCCEEEEec
Q 020454 259 -TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-CS-----------GSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 259 -~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-~~-----------~~v~~l~~~p~~~~l~s~s 320 (326)
...+.+.|. +|...+....++.|.+.|..+++.+..+... .. ...+.|+|+|+++.++.++
T Consensus 151 ~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 151 VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 136678887 6744445446789999999999999888631 00 2458999999876554443
No 230
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.96 E-value=1.1e-07 Score=87.71 Aligned_cols=180 Identities=12% Similarity=0.023 Sum_probs=110.7
Q ss_pred CCceEEEEecC-C----cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCe-----------
Q 020454 122 RSRTLLTCTTK-G----KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVE----------- 185 (326)
Q Consensus 122 ~~~~l~~~~~~-g----~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~----------- 185 (326)
++..|+.+..+ | .|++||+...... .. .. ....+..++|+|+ +.|+.+..+..
T Consensus 173 DG~~la~~~~~~G~e~~~i~v~dl~tg~~~--------~~-~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 173 DGRLLAYSVQDGGSDWRTVKFVGVADGKPL--------AD-EL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp TSSEEEEEEEETTCSEEEEEEEETTTCCEE--------EE-EE-EEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCC--------Cc-cC-CCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 55566655443 3 5888887654321 11 00 0112346889999 88888776553
Q ss_pred ---EEEEECCCcee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----CeEEEEeCCCCCCc-eeEE
Q 020454 186 ---VNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLYDTSAQRRP-VMSF 254 (326)
Q Consensus 186 ---i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~v~iwd~~~~~~~-~~~~ 254 (326)
|.+|++.++.. ........ ++.++.++.|+| ++++|+..+.+ ..|++||+.++... ...+
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~-------~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 312 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPE-------LPKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL 312 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTT-------CTTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred CCEEEEEECCCCchhCEEEeccCC-------CCeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence 88999876542 11111111 123577888987 67677776644 38999998754112 4455
Q ss_pred eecCCceEEEEecCCCCeEEEEcC----CCcEEEEECCCC--eEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 255 DFRETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTG--KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 255 ~~~~~~i~~v~~s~~~~~l~~g~~----dg~v~iwd~~~~--~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
..+...+... ++|+|+.|+..+. ++.|.+||+.++ +....+..+ ...+..++|. ++.++++...|+.
T Consensus 313 ~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 313 IPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSEEEEEEEE-BTEEEEEEEETTE
T ss_pred cCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCeEEEEEEE-CCEEEEEEEECCE
Confidence 5554445554 3488988886665 345999999874 344445544 6677788887 5667888777764
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.95 E-value=5.3e-08 Score=81.38 Aligned_cols=217 Identities=9% Similarity=-0.116 Sum_probs=127.1
Q ss_pred cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe----------cCCcEEEEEcccccc
Q 020454 76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT----------TKGKASMRSIEVTKV 145 (326)
Q Consensus 76 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~----------~~g~v~i~~~~~~~~ 145 (326)
+|.++|..+++.+..+.. . ..+ ++.+.+ +...++++. .++.|.+||.....
T Consensus 47 ~vsvID~~t~~v~~~i~v-------G-~~P--~i~~sp--------Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~- 107 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLG-------A-FLS--LAVAGH--------SGSDFALASTSFARSAKGKRTDYVEVFDPVTFL- 107 (368)
T ss_dssp EEEEEETTTTEEEEEEEE-------C-TTC--EEEECT--------TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-
T ss_pred eEEEEECCCCeEEEEEeC-------C-CCC--ceEECC--------CCCEEEEEcccccccccCCCCCEEEEEECCCCC-
Confidence 888999999999888874 2 233 566544 556777775 37889999977654
Q ss_pred ccccccceEEEEEccC------CCceEEEEEcCCCCEEEEecC--CCeEEE--EECCCceeeeeecC-------------
Q 020454 146 SAESSCSTVKSWNVCA------SGTIAFSKVDISEKFSLFGGK--GVEVNV--WDLDKCEKIWTAKP------------- 202 (326)
Q Consensus 146 ~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~sg~~--d~~i~i--wd~~~~~~~~~~~~------------- 202 (326)
.++.+.+.. ......+.++|++++++++.. ++.+.+ +|+.+-+.+ ....
T Consensus 108 -------vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i-~v~~~~~~~p~g~~~~~ 179 (368)
T 1mda_H 108 -------PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT-KSASCFHIHPGAAATHY 179 (368)
T ss_dssp -------EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEE-ECSSCCCCEEEETTEEE
T ss_pred -------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEE-ECCCceEEccCCCeEEE
Confidence 334443320 123567899999999888764 467888 998761111 0000
Q ss_pred --CCCCC---CCcCC----CCcee------------eeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-ceeEEeec---
Q 020454 203 --PPKNS---LGIFT----PTWFT------------SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFR--- 257 (326)
Q Consensus 203 --~~~~~---~~~~~----~~~v~------------~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~--- 257 (326)
..... ..+.. ...+. -.. .+ ++..++..+. +.|.+.|...... .+..+...
T Consensus 180 ~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~-~~--~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~ 255 (368)
T 1mda_H 180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ-AN--YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESG 255 (368)
T ss_dssp CCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE-ET--TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTH
T ss_pred EEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccc-cc--cCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccc
Confidence 00000 00000 00000 001 22 2234444444 7888888764311 11111111
Q ss_pred -------CCceEEEEecCCCCeEEEEcC-C--------CcEEEEECCCCeEEEEEcceecceEEEEEECCCCC-EEEEec
Q 020454 258 -------ETPIKAVAEEPDSFNIYIGNG-S--------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCG 320 (326)
Q Consensus 258 -------~~~i~~v~~s~~~~~l~~g~~-d--------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~s 320 (326)
......++++|+++.++++.. . +.+.++|+.+.+.+.++... .....|+|+|+++ ++++..
T Consensus 256 ~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~ 333 (368)
T 1mda_H 256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANS 333 (368)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEE
T ss_pred ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEcc
Confidence 011122689999998887643 2 35679999999999888743 3789999999997 556665
Q ss_pred -cCccC
Q 020454 321 -FLEAA 325 (326)
Q Consensus 321 -~D~~~ 325 (326)
.++.+
T Consensus 334 ~~~~~V 339 (368)
T 1mda_H 334 AGTEVL 339 (368)
T ss_dssp TTTTEE
T ss_pred CCCCeE
Confidence 46654
No 232
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.93 E-value=9.3e-07 Score=72.00 Aligned_cols=176 Identities=10% Similarity=0.015 Sum_probs=110.1
Q ss_pred ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCC
Q 020454 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (326)
Q Consensus 124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~ 203 (326)
..+++...++.|+.|+.... ....+.. ...+.+++++++++++++. ++.|.+||..+++........
T Consensus 26 ~l~~~d~~~~~i~~~d~~~~---------~~~~~~~--~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~ 92 (297)
T 3g4e_A 26 SLLFVDIPAKKVCRWDSFTK---------QVQRVTM--DAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVD 92 (297)
T ss_dssp EEEEEETTTTEEEEEETTTC---------CEEEEEC--SSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECC
T ss_pred EEEEEECCCCEEEEEECCCC---------cEEEEeC--CCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecC
Confidence 35556667888888886532 2344443 4679999999999966553 568999999877654332221
Q ss_pred CCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-----------CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCe
Q 020454 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN 272 (326)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~ 272 (326)
... ....+..+++.| +++++++... .+.|..+|.. + . +..+.........++|+|+++.
T Consensus 93 ~~~-----~~~~~~di~~d~--dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g-~-~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 93 NDK-----KNNRFNDGKVDP--AGRYFAGTMAEETAPAVLERHQGALYSLFPD-H-H-VKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp TTC-----SSEEEEEEEECT--TSCEEEEEEECCSBTTBCCTTCEEEEEECTT-S-C-EEEEEEEESBEEEEEECTTSCE
T ss_pred CCC-----CCCCCCCEEECC--CCCEEEecCCcccccccccCCCcEEEEEECC-C-C-EEEEeeccccccceEEcCCCCE
Confidence 110 113467888887 5655554422 2344444443 2 2 3333333345688999999987
Q ss_pred EE-EEcCCCcEEEEEC--CCCeEE-----EEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454 273 IY-IGNGSGDLASVDI--RTGKLL-----GCFIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 273 l~-~g~~dg~v~iwd~--~~~~~~-----~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
|+ +.+.++.|.+||+ .++++. ..+..+ .+....+++++++.+.++...++
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-~~~p~g~~~d~~G~lwva~~~~~ 220 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE-EQIPDGMCIDAEGKLWVACYNGG 220 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG-GCEEEEEEEBTTSCEEEEEETTT
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC-CCCCCeeEECCCCCEEEEEcCCC
Confidence 75 5566789999997 455432 223333 45788999999998776654433
No 233
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.91 E-value=1.1e-07 Score=86.39 Aligned_cols=61 Identities=11% Similarity=0.184 Sum_probs=46.9
Q ss_pred CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (326)
Q Consensus 236 dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 298 (326)
+|.|..||+.++ +.+.++.... +.....+...+.++++|+.||.++.||.++++.+.+++.
T Consensus 437 ~g~l~A~D~~tG-~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 437 SGALLAWDPVKQ-KAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp EEEEEEEETTTT-EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEeCCCC-cEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 488999999988 5566665543 233334445688999999999999999999999988874
No 234
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.90 E-value=4e-07 Score=83.30 Aligned_cols=223 Identities=9% Similarity=0.033 Sum_probs=128.6
Q ss_pred eeeCCCCCeEEEEec-----CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC
Q 020454 59 IDDSQNDPLLAVARK-----NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (326)
Q Consensus 59 ~~~~~~~~~l~~g~~-----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g 133 (326)
..+++++++|+.+.. ..+|++||+.+++.+..... . ....++.|. ++..|+.++.+.
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~-------~--~k~~~~~Ws---------Dg~~l~y~~~~~ 195 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK-------D--VKFSGISWL---------GNEGFFYSSYDK 195 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE-------E--EESCCCEEE---------TTTEEEEEESSC
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC-------C--ceeccEEEe---------CCCEEEEEEecC
Confidence 345677777875432 25799999999886543211 0 001233432 234566666553
Q ss_pred -------------cEEEEEccccccccccccceEEEEEccC--CCceEEEEEcCCCCEEEEec----CCCeEEEEECCCc
Q 020454 134 -------------KASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGG----KGVEVNVWDLDKC 194 (326)
Q Consensus 134 -------------~v~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~----~d~~i~iwd~~~~ 194 (326)
.|++|++.... .....++.... ...+..+.++|++++|+... .++.|.++|+.++
T Consensus 196 ~~~~~~~~~~~~~~v~~~~lgt~~------~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 196 PDGSELSARTDQHKVYFHRLGTAQ------EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE 269 (693)
T ss_dssp CC-------CCCCEEEEEETTSCG------GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred cccccccccCCCcEEEEEECCCCc------ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence 37777765432 11233444322 33467899999999875432 2358999999876
Q ss_pred e-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC---CeEEEEeCCCCCC-ceeEEeecCCceEEEEecCC
Q 020454 195 E-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---HQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPD 269 (326)
Q Consensus 195 ~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d---g~v~iwd~~~~~~-~~~~~~~~~~~i~~v~~s~~ 269 (326)
. ....+.... ...... +.+. ++.+++....+ +.|..+|+.+... ....+..+...+. .|+++
T Consensus 270 ~~~~~~l~~~~---------~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~ 336 (693)
T 3iuj_A 270 NAPLLTVQGDL---------DADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG 336 (693)
T ss_dssp TCCCEEEECSS---------SSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE
T ss_pred CCceEEEeCCC---------CceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE
Confidence 3 222232221 112222 4453 34344555443 6899999986522 1245555555554 88899
Q ss_pred CCeEEEEcC-CC--cEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454 270 SFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 270 ~~~l~~g~~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
+++|+.... ++ .|++||+..+ ....+.....+.+..+.++|++..|+..
T Consensus 337 g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 337 SGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFG 388 (693)
T ss_dssp TTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred CCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEE
Confidence 988876554 44 6899998754 4444542215677888888877655443
No 235
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.88 E-value=3e-06 Score=75.41 Aligned_cols=80 Identities=15% Similarity=0.015 Sum_probs=52.3
Q ss_pred CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecce-EEEEEECCCC
Q 020454 235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS-IRSIARHPTL 313 (326)
Q Consensus 235 ~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~-v~~l~~~p~~ 313 (326)
.+|.|..||+.++ +.+.++.... .+....+...+..++.++.||.|+.||.++++.+.+++.. ... -.-+.+..++
T Consensus 442 ~~g~l~a~D~~tG-~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~-~~~~~~p~~~~~~G 518 (571)
T 2ad6_A 442 EMGQIRAFDLTTG-KAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP-SGGIGSPMTYSFKG 518 (571)
T ss_dssp CCEEEEEECTTTC-CEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCCEEEEETT
T ss_pred CCCeEEEEECCCC-CEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC-CCcEeeeEEEEECC
Confidence 3588999999987 5566665432 2222223334678888999999999999999999888743 211 1123344566
Q ss_pred CEEE
Q 020454 314 PIIA 317 (326)
Q Consensus 314 ~~l~ 317 (326)
+.++
T Consensus 519 ~~yv 522 (571)
T 2ad6_A 519 KQYI 522 (571)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 236
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.88 E-value=2.5e-06 Score=76.09 Aligned_cols=211 Identities=11% Similarity=0.117 Sum_probs=114.4
Q ss_pred eeeeeecC-cccEEEEEe-cCCcCCCcceeeeccCCCCCc-----e----EEEEEe--eeCCCCCeEEEEecCCcEEEEe
Q 020454 15 LRALTFDS-LGLIKVIEA-RGEHGGVPKVVERWGDPHSSN-----C----VLAASI--DDSQNDPLLAVARKNGLTDILN 81 (326)
Q Consensus 15 ~~l~~~~~-~G~i~vw~~-~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~--~~~~~~~~l~~g~~dg~i~i~~ 81 (326)
-++.+++. +|.|.-+|. .++ +..-++....... + .-.... .+.....++++++.|+.|..+|
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG-----~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlD 137 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPG-----TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALN 137 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTT-----SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCC-----cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEE
Confidence 45667777 788888888 666 3322222111100 0 001111 1111122488899999999999
Q ss_pred ccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------CCcEEEEEccccccccccccceEE
Q 020454 82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVSAESSCSTVK 155 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------~g~v~i~~~~~~~~~~~~~~~~~~ 155 (326)
..+|+.+-........ ....+.+--.. .++.+++++. +|.|+.+|....+ .
T Consensus 138 a~TG~~~W~~~~~~~~----~~~~~~ssP~v---------~~g~V~vg~~g~e~g~~g~v~A~D~~TG~----------~ 194 (599)
T 1w6s_A 138 AETGETVWKVENSDIK----VGSTLTIAPYV---------VKDKVIIGSSGAELGVRGYLTAYDVKTGE----------Q 194 (599)
T ss_dssp TTTCCEEEEEECCCGG----GTCBCCSCCEE---------ETTEEEECCBCGGGTCCCEEEEEETTTCC----------E
T ss_pred CCCCCEEEeecCCCCC----ccceeecCCEE---------ECCEEEEEecccccCCCCeEEEEECCCCc----------E
Confidence 9999987665531100 00011110000 1345666553 6788877765432 1
Q ss_pred EEEccCCCc--------------------------------------e-EEEEEcCCCCEEEEecCC-------------
Q 020454 156 SWNVCASGT--------------------------------------I-AFSKVDISEKFSLFGGKG------------- 183 (326)
Q Consensus 156 ~~~~~~~~~--------------------------------------v-~~~~~~~~~~~l~sg~~d------------- 183 (326)
+|+.....+ + ..+++.++..+++.+..+
T Consensus 195 ~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~ 274 (599)
T 1w6s_A 195 VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDN 274 (599)
T ss_dssp EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCc
Confidence 232211111 1 134566677777776654
Q ss_pred ---CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC---cEEEEEeCCCeEEEEeCCCCCCceeEEe
Q 020454 184 ---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFD 255 (326)
Q Consensus 184 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 255 (326)
+.|..+|.++++.++..+....+.+.+.......-+.. +..++ ..++.++.+|.++++|.+++ +++....
T Consensus 275 ~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~-~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~~~ 350 (599)
T 1w6s_A 275 KWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQ-KDKDGKARKLLTHPDRNGIVYTLDRTDG-ALVSANK 350 (599)
T ss_dssp TTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEE-ECTTSCEEEEEEEECTTSEEEEEETTTC-CEEEEEE
T ss_pred cccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEec-cccCCcEEEEEEEECCCcEEEEEECCCC-CEeeccc
Confidence 38999999999999987765544332211111001111 10244 46777899999999999987 5555543
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.86 E-value=1.5e-07 Score=77.73 Aligned_cols=244 Identities=13% Similarity=0.085 Sum_probs=140.4
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 94 (326)
-++..++.+|.|..|| .++ +. .|........+. +.....++ .|.+++.+ |..||. +++....+..
T Consensus 31 g~l~v~t~~~~l~~~d-~~g-----~~--~~~~~~~~~~~~--~~~~~~~g-~l~v~t~~--l~~~d~-~g~~~~~~~~- 95 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDG-----SV--KWFFKSGEIIEC--RPSIGKDG-TIYFGSDK--VYAINP-DGTEKWRFDT- 95 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTS-----CE--EESSCGGGEEEE--CCEETTTT-EECCSSCE--EEEECC-CGGGGGGSCC-
T ss_pred CeEEEEcCCCEEEEEC-CCC-----cE--EEEEecCCCccc--ceEEecCC-cEEEecCc--EEEECC-CCcEEEEEEC-
Confidence 4677888888888898 655 33 232221111211 22222223 46666665 888886 5555443332
Q ss_pred CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccC-CCceEEEEEcCC
Q 020454 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDIS 173 (326)
Q Consensus 95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~ 173 (326)
.......... .++.+..++.++.+..++.. .. ..|.... ...+.++...++
T Consensus 96 -------~~~~~~~~~~----------~~~~l~v~t~~~~l~~~d~~-g~----------~~~~~~~~~~~~~~~~~~~~ 147 (330)
T 3hxj_A 96 -------KKAIVSDFTI----------FEDILYVTSMDGHLYAINTD-GT----------EKWRFKTKKAIYATPIVSED 147 (330)
T ss_dssp ------------CCEEE----------ETTEEEEECTTSEEEEECTT-SC----------EEEEEECSSCCCSCCEECTT
T ss_pred -------CCCcccCceE----------ECCEEEEEecCCEEEEEcCC-CC----------EEEEEcCCCceeeeeEEcCC
Confidence 0111111221 24578888889988888754 11 1233221 223455566666
Q ss_pred CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 253 (326)
+. |..++.++.|..+|.. ++..+...... ..+.++...+ ++ .+..++ +.|..|| .++ ..+..
T Consensus 148 g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~---------~~~~~~~~d~--~g-~l~v~t--~~l~~~d-~~g-~~~~~ 209 (330)
T 3hxj_A 148 GT-IYVGSNDNYLYAINPD-GTEKWRFKTND---------AITSAASIGK--DG-TIYFGS--DKVYAIN-PDG-TEKWN 209 (330)
T ss_dssp SC-EEEECTTSEEEEECTT-SCEEEEEECSS---------CCCSCCEECT--TC-CEEEES--SSEEEEC-TTS-CEEEE
T ss_pred CE-EEEEcCCCEEEEECCC-CCEeEEEecCC---------CceeeeEEcC--CC-EEEEEe--CEEEEEC-CCC-cEEEE
Confidence 66 5567788999999998 77666554321 1233444433 44 455555 8899999 555 44555
Q ss_pred EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
+......+.++...++| .|.+++.++.+..+|. +++.+..+... ...+.++.+.+++. |..++.+|
T Consensus 210 ~~~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~g~-l~v~t~~g 275 (330)
T 3hxj_A 210 FYAGYWTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTG-KRIESSPVIGNTDT-IYFGSYDG 275 (330)
T ss_dssp ECCSSCCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECS-SCCCSCCEECTTSC-EEEECTTC
T ss_pred EccCCcceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCC-CCccccceEcCCCe-EEEecCCC
Confidence 55555668888888777 4666777888888874 56666666543 44445566665664 44455553
No 238
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.86 E-value=1.2e-05 Score=66.35 Aligned_cols=217 Identities=10% Similarity=-0.036 Sum_probs=118.5
Q ss_pred eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCC
Q 020454 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (326)
Q Consensus 17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~ 96 (326)
+++....+.|..|+..++ +.. .+..+ ..+.++.+..+ +. ++++..+ .|.+||..++++...... ..
T Consensus 64 ~~~d~~~~~i~~~d~~~~-----~~~-~~~~~---~~v~~i~~~~d--g~-l~v~~~~-gl~~~d~~~g~~~~~~~~-~~ 129 (326)
T 2ghs_A 64 WWFNILERELHELHLASG-----RKT-VHALP---FMGSALAKISD--SK-QLIASDD-GLFLRDTATGVLTLHAEL-ES 129 (326)
T ss_dssp EEEEGGGTEEEEEETTTT-----EEE-EEECS---SCEEEEEEEET--TE-EEEEETT-EEEEEETTTCCEEEEECS-ST
T ss_pred EEEECCCCEEEEEECCCC-----cEE-EEECC---CcceEEEEeCC--Ce-EEEEECC-CEEEEECCCCcEEEEeeC-CC
Confidence 444556677888887755 221 22222 23444444433 44 4445544 499999887775332221 00
Q ss_pred CCCCCCCCCeeeeecccccccccCCCCceEEEEecC-----CcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-----GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (326)
Q Consensus 97 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~-----g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 171 (326)
......+.++.+.+ ++ .++.++.+ +...+|.++ .. .+..+. ........++++
T Consensus 130 ---~~~~~~~~~i~~d~--------~G-~l~v~~~~~~~~~~~~~l~~~~-~g--------~~~~~~-~~~~~~~~i~~s 187 (326)
T 2ghs_A 130 ---DLPGNRSNDGRMHP--------SG-ALWIGTMGRKAETGAGSIYHVA-KG--------KVTKLF-ADISIPNSICFS 187 (326)
T ss_dssp ---TCTTEEEEEEEECT--------TS-CEEEEEEETTCCTTCEEEEEEE-TT--------EEEEEE-EEESSEEEEEEC
T ss_pred ---CCCCCCCCCEEECC--------CC-CEEEEeCCCcCCCCceEEEEEe-CC--------cEEEee-CCCcccCCeEEc
Confidence 01112455555433 23 34444432 233455443 11 222211 112346789999
Q ss_pred CCCCEEE-EecCCCeEEEEECC--Cc-eee--eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC
Q 020454 172 ISEKFSL-FGGKGVEVNVWDLD--KC-EKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (326)
Q Consensus 172 ~~~~~l~-sg~~d~~i~iwd~~--~~-~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~ 245 (326)
|+++.|+ +...++.|.+||+. ++ +.. ..+..... ......++.+.+ +++++++...++.|..||..
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~------~~~~p~gi~~d~--~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG------IKGGMDGSVCDA--EGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT------SSSEEEEEEECT--TSCEEEEEETTTEEEEECTT
T ss_pred CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC------CCCCCCeeEECC--CCCEEEEEeCCCEEEEECCC
Confidence 9998664 44567899999986 44 211 01100000 012345677765 56677766667899999984
Q ss_pred CCCCceeEEeecCCceEEEEec-CCCCeEEEEcCC
Q 020454 246 AQRRPVMSFDFRETPIKAVAEE-PDSFNIYIGNGS 279 (326)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~v~~s-~~~~~l~~g~~d 279 (326)
+ +.+..+..+...+++++|+ ++++.|++++..
T Consensus 260 -g-~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 260 -G-NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp -C-CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred -C-CEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 4 4566777676789999998 888877655443
No 239
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.86 E-value=1.1e-05 Score=62.64 Aligned_cols=182 Identities=14% Similarity=0.071 Sum_probs=114.9
Q ss_pred CCeeeeecccccccccCCCCceE-EEEecC--CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEe
Q 020454 104 DGIVGLHLFKRQREESSSRSRTL-LTCTTK--GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180 (326)
Q Consensus 104 ~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~--g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 180 (326)
.-..+|.+. ++.| .+.+.. ..|+.+|+.... .++...+.....-..+++.. +++....
T Consensus 21 ~ftqGL~~~----------~~~LyestG~~g~S~v~~vD~~tgk--------v~~~~~l~~~~fgeGi~~~~-~~ly~lt 81 (243)
T 3mbr_X 21 AFTEGLFYL----------RGHLYESTGETGRSSVRKVDLETGR--------ILQRAEVPPPYFGAGIVAWR-DRLIQLT 81 (243)
T ss_dssp CCEEEEEEE----------TTEEEEEECCTTSCEEEEEETTTCC--------EEEEEECCTTCCEEEEEEET-TEEEEEE
T ss_pred cccccEEEE----------CCEEEEECCCCCCceEEEEECCCCC--------EEEEEeCCCCcceeEEEEeC-CEEEEEE
Confidence 455677752 2344 444444 378888876544 34444443222223445542 3444555
Q ss_pred cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC--
Q 020454 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-- 258 (326)
Q Consensus 181 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-- 258 (326)
-.++.+.+||..+.+.+.++.... . .| ++ .+ ++..|+.+..+++|.++|+.+. +.+.++....
T Consensus 82 w~~~~v~v~D~~tl~~~~ti~~~~-~-------Gw--gl--t~--dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g 146 (243)
T 3mbr_X 82 WRNHEGFVYDLATLTPRARFRYPG-E-------GW--AL--TS--DDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGG 146 (243)
T ss_dssp SSSSEEEEEETTTTEEEEEEECSS-C-------CC--EE--EE--CSSCEEEECSSSEEEEECTTTC-CEEEEEECEETT
T ss_pred eeCCEEEEEECCcCcEEEEEeCCC-C-------ce--EE--ee--CCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCC
Confidence 678999999999999888766532 1 11 33 33 3345666666899999999987 5566665432
Q ss_pred ---CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce------------ecceEEEEEECCCCCEEEEec
Q 020454 259 ---TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------------CSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 259 ---~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~------------~~~~v~~l~~~p~~~~l~s~s 320 (326)
..++.+.|. +|+..+..-.+..|.+.|.++++.+..+... ...-.+.||++|+++.|+..|
T Consensus 147 ~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 147 RPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred cccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 345667765 6654444446789999999999999887621 013567999999776665554
No 240
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.85 E-value=4.7e-06 Score=65.31 Aligned_cols=172 Identities=13% Similarity=0.037 Sum_probs=111.3
Q ss_pred CceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecC
Q 020454 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (326)
Q Consensus 123 ~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 202 (326)
+..+++.+.+|.|+.+|++..+ .++.. +.....-..+++.. +++....-.++.+.+||..+.+.+.++..
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgk--------v~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQ--------PVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSS--------CSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCc--------EEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 3456777778898888876544 22222 32222223456653 34444556789999999999998887765
Q ss_pred CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC-----CceEEEEecCCCCeEEEEc
Q 020454 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-----TPIKAVAEEPDSFNIYIGN 277 (326)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~i~~v~~s~~~~~l~~g~ 277 (326)
.. ..+ +++ + +++.|+.+..+++|.++|+.+. +.+.++.... ..++.+.|. +|+..+..-
T Consensus 135 ~~-eGw---------GLt--~--Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw 198 (268)
T 3nok_A 135 SG-EGW---------GLC--Y--WNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA-NGVIYANIW 198 (268)
T ss_dssp SS-CCC---------CEE--E--ETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred CC-cee---------EEe--c--CCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe-CCEEEEEEC
Confidence 32 111 333 3 3446766667999999999987 5566665422 245667776 675444444
Q ss_pred CCCcEEEEECCCCeEEEEEcce-e-----------cceEEEEEECCCCCEEEEec
Q 020454 278 GSGDLASVDIRTGKLLGCFIGK-C-----------SGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 278 ~dg~v~iwd~~~~~~~~~~~~~-~-----------~~~v~~l~~~p~~~~l~s~s 320 (326)
.++.|.+.|.++++.+..+... . ..-.+.|||+|+++.|+..|
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 6789999999999998887631 0 12568999999765554443
No 241
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.81 E-value=3.8e-06 Score=74.94 Aligned_cols=81 Identities=19% Similarity=0.072 Sum_probs=52.1
Q ss_pred CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecce-EEEEEECCCC
Q 020454 235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS-IRSIARHPTL 313 (326)
Q Consensus 235 ~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~-v~~l~~~p~~ 313 (326)
.+|.|.-||+.++ +.+.+..... +...-.+...+..++.|+.||.++.||.++|+.+.+++.. .+. ..-+.+..++
T Consensus 451 ~~G~l~A~D~~tG-~~~W~~~~~~-~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~-~g~~~~P~~y~~~G 527 (599)
T 1w6s_A 451 GLGQIKAYNAITG-DYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP-SGAIGYPMTYTHKG 527 (599)
T ss_dssp CCEEEEEECTTTC-CEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCCEEEEETT
T ss_pred CcCeEEEEECCCC-CEEeEecCCC-CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC-CCcEeccEEEEeCC
Confidence 4578999999988 5566654331 2211112235778888999999999999999999888743 221 1224454566
Q ss_pred C-EEEE
Q 020454 314 P-IIAS 318 (326)
Q Consensus 314 ~-~l~s 318 (326)
+ |+++
T Consensus 528 ~qyv~~ 533 (599)
T 1w6s_A 528 TQYVAI 533 (599)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 5 4444
No 242
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.81 E-value=9e-06 Score=63.72 Aligned_cols=172 Identities=13% Similarity=0.059 Sum_probs=108.7
Q ss_pred ceEEEEecCC--cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454 124 RTLLTCTTKG--KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (326)
Q Consensus 124 ~~l~~~~~~g--~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 201 (326)
..+.+.+.+| .|+.+|+...+ .++...+.....-..++... +++....-.++.+.+||..+.+.+.++.
T Consensus 54 ~LyestG~~g~S~v~~vD~~Tgk--------v~~~~~l~~~~FgeGit~~g-~~ly~ltw~~~~v~v~D~~t~~~~~ti~ 124 (262)
T 3nol_A 54 YFYESTGLNGRSSIRKVDIESGK--------TLQQIELGKRYFGEGISDWK-DKIVGLTWKNGLGFVWNIRNLRQVRSFN 124 (262)
T ss_dssp EEEEEEEETTEEEEEEECTTTCC--------EEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCCceEEEEECCCCc--------EEEEEecCCccceeEEEEeC-CEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence 3455555555 78888876543 33444443222223355542 2334444578899999999999887766
Q ss_pred CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec--C---CceEEEEecCCCCeEEEE
Q 020454 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--E---TPIKAVAEEPDSFNIYIG 276 (326)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~---~~i~~v~~s~~~~~l~~g 276 (326)
... .. ..+.+ ++..|+....+++|.++|+.+. +.+.++... . ..++.+.|. +|+..+..
T Consensus 125 ~~~-eG-----------~glt~--dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~ 188 (262)
T 3nol_A 125 YDG-EG-----------WGLTH--NDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEWV-DGEIFANV 188 (262)
T ss_dssp CSS-CC-----------CCEEE--CSSCEEECCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred CCC-Cc-----------eEEec--CCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence 532 11 12333 3446666666889999999987 556665542 1 234567776 67544444
Q ss_pred cCCCcEEEEECCCCeEEEEEcce-e----------cceEEEEEECCCCCEEEEec
Q 020454 277 NGSGDLASVDIRTGKLLGCFIGK-C----------SGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 277 ~~dg~v~iwd~~~~~~~~~~~~~-~----------~~~v~~l~~~p~~~~l~s~s 320 (326)
-.++.|.+.|.++++.+..+... . ....+.|||+|+++.|+..|
T Consensus 189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 46889999999999998887631 0 12457999999877666655
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.80 E-value=3e-06 Score=74.14 Aligned_cols=229 Identities=11% Similarity=0.004 Sum_probs=142.7
Q ss_pred EEEEecCCcEEEEeccccceeeeecccCCCCCCCC---------------------------------CCCeeeeecccc
Q 020454 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE---------------------------------DDGIVGLHLFKR 114 (326)
Q Consensus 68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~i~~l~~~~~ 114 (326)
+.+|+..|.|+|+-+.+++.+..+..+.+.+.++- +..-..+...+.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 67889999999999988888777766554432210 000011111000
Q ss_pred cccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE-c-CCCCEEEEec----------
Q 020454 115 QREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV-D-ISEKFSLFGG---------- 181 (326)
Q Consensus 115 ~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~sg~---------- 181 (326)
. .++.++++.. .++.|.+.|++..+ ..++..+........+++ + |+++++++++
T Consensus 98 ~-----~DG~~lfVnd~~~~rVavIdl~t~~--------~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 98 K-----YDGRFLFMNDKANTRVARVRCDVMK--------CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp E-----EEEEEEEEEETTTTEEEEEETTTTE--------EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred C-----cCCCEEEEEcCCCCEEEEEECCCce--------EeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCC
Confidence 0 0233444433 34567778876544 555556666677888887 5 8999888874
Q ss_pred --------CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC----------------
Q 020454 182 --------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---------------- 237 (326)
Q Consensus 182 --------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg---------------- 237 (326)
.++.+.+.|..+.+..+++.-.. + ...++++| +++++++.+.+.
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~---------pd~~~~sp--dGk~~~vt~~~se~~~~i~~~~~~~~d~ 232 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEVAWQVLVSG-N---------LDNCDADY--EGKWAFSTSYNSEKGMTLPEMTAAEMDH 232 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEEEEEEEESS-C---------CCCEEECS--SSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred cccccccccCceEEEEECCCCeEEEEEEeCC-C---------ccceEECC--CCCEEEEEecCcccCcchhhccccccce
Confidence 34679999999988887755211 1 11334555 344555555332
Q ss_pred ----------------------eEEEEeCCC--CCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCe-
Q 020454 238 ----------------------QVRLYDTSA--QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGK- 291 (326)
Q Consensus 238 ----------------------~v~iwd~~~--~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~- 291 (326)
.|.+.|.++ ....+..+.... ...++.++|||+++++++ .+.+|.++|+.+.+
T Consensus 233 v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~ 311 (595)
T 1fwx_A 233 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA 311 (595)
T ss_dssp EEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred EEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECccccc
Confidence 478888886 322245555543 446789999999888555 67899999999653
Q ss_pred -----------EEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454 292 -----------LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA 324 (326)
Q Consensus 292 -----------~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~ 324 (326)
....... ....+.++|+|+|....+.-.|+.
T Consensus 312 ~~~~~l~~~~~v~~~v~v--G~gP~h~aF~~dG~aY~t~~ldsq 353 (595)
T 1fwx_A 312 VFYENADPRSAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQ 353 (595)
T ss_dssp HHHSCCCGGGGEEECCBC--CSCEEEEEECTTSEEEEEETTTTE
T ss_pred ccccccCcccceEEEcCC--CCCcceEEECCCCeEEEEEecCCc
Confidence 3333432 446889999999944445555544
No 244
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.71 E-value=5e-06 Score=67.93 Aligned_cols=172 Identities=12% Similarity=0.038 Sum_probs=107.3
Q ss_pred eEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCC
Q 020454 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (326)
Q Consensus 125 ~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~ 204 (326)
.+++...++.|..|+... .+..+.. ....+..+.++++++++++...++.|.+||.. ++.........
T Consensus 59 l~~~d~~~~~i~~~~~~g----------~~~~~~~-~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~ 126 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWREDG----------TVDVLLD-ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA 126 (305)
T ss_dssp EEEEETTTTEEEEEETTS----------CEEEEEE-SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEET
T ss_pred EEEEECCCCEEEEEeCCC----------CEEEEeC-CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC
Confidence 566777788888887421 2333432 34568899999999988776667899999986 44322111110
Q ss_pred CCCCCcCCCCceeeeEEeecCCCcEEEE----EeC-------------CCeEEEEeCCCCCCceeEEeecCCceEEEEec
Q 020454 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVA----GTN-------------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (326)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~p~~~~~~l~~----~~~-------------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s 267 (326)
.. ....+..+++.| +++++++ ++. .+.|..||..++ + +..+. .......++|+
T Consensus 127 ~~-----~~~~~~~i~~d~--dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~-~~~~~-~~~~p~gl~~s 196 (305)
T 3dr2_A 127 GK-----RLNSPNDLIVAR--DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-P-LQRMA-DLDHPNGLAFS 196 (305)
T ss_dssp TE-----ECSCCCCEEECT--TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-C-CEEEE-EESSEEEEEEC
T ss_pred CC-----ccCCCCCEEECC--CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-c-EEEEe-cCCCCcceEEc
Confidence 00 012356778887 5667765 432 356888887655 3 22222 33456789999
Q ss_pred CCCCeEEEEcCC------CcEEEEECCCCeEE--EEE-cceecceEEEEEECCCCCEEEEe
Q 020454 268 PDSFNIYIGNGS------GDLASVDIRTGKLL--GCF-IGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 268 ~~~~~l~~g~~d------g~v~iwd~~~~~~~--~~~-~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
|+++.|+.+... +.|.+|++..+.+. ..+ ... .+....+++++++.+.++.
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-~~~pdgi~~d~~G~lwv~~ 256 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-DGLPDGFCVDRGGWLWSSS 256 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-SSCCCSEEECTTSCEEECC
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-CCCCCeEEECCCCCEEEec
Confidence 999988877665 68999998865421 111 111 3345678888888855443
No 245
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.70 E-value=1.5e-05 Score=67.51 Aligned_cols=234 Identities=12% Similarity=0.083 Sum_probs=128.1
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccC-----C-CCCceEEEEEeeeCCCCCeEEEEecC------CcEEEEec
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGD-----P-HSSNCVLAASIDDSQNDPLLAVARKN------GLTDILNP 82 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~l~~g~~d------g~i~i~~~ 82 (326)
..++.+-.++.|.|+|+.+. ...+++...... + ....- ..+.. .+++ +++++..+ |.|.++|.
T Consensus 97 ~l~v~~l~s~~I~viD~~t~-p~~p~~~k~ie~~~~~~~~g~s~P-h~~~~--~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPN-PREPKIIKVIEPEEVKKVSGYSRL-HTVHC--GPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSC-TTSCEEEEEECHHHHHHHHCEEEE-EEEEE--CSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred EEEEccCCCCeEEEEECCCC-CCCceeeeeechhhcccccCCCcc-cceeE--CCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 55777888899999998754 222334433310 0 00000 00111 1223 55555555 78999999
Q ss_pred cccceeeeecccCCCCCCCCCCC-eeeeecccccccccCCCCceEEEEe-------------------cCCcEEEEEccc
Q 020454 83 LNGDLRVAISNAGDSGAQPEDDG-IVGLHLFKRQREESSSRSRTLLTCT-------------------TKGKASMRSIEV 142 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~~~~~~~~~~~~~~~l~~~~-------------------~~g~v~i~~~~~ 142 (326)
.+.+.+..+..- .+... -..+.+.+ ..+.+++.. ....|.+||++.
T Consensus 172 ~T~~v~~~~~~~------~~~~~~~Yd~~~~p--------~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 172 YSFEPLGKWEID------RGDQYLAYDFWWNL--------PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp TTCCEEEECCSB------CTTCCCCCCEEEET--------TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred CCCeEEEEEccC------CCCccccceEEECC--------CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 999988877631 11111 11122222 334555552 378999999875
Q ss_pred cccccccccceEEEEEcc-CCCceEEEEE--cCCCCEEEEec------CCCeEEEEECCCcee--eee--ecCCCCC-CC
Q 020454 143 TKVSAESSCSTVKSWNVC-ASGTIAFSKV--DISEKFSLFGG------KGVEVNVWDLDKCEK--IWT--AKPPPKN-SL 208 (326)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~--~~~~~~l~sg~------~d~~i~iwd~~~~~~--~~~--~~~~~~~-~~ 208 (326)
.. .+..+.+. .......+.| +|+++++.++. .+++|.+|....++. ... +...... .+
T Consensus 238 ~k--------~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~l 309 (462)
T 2ece_A 238 RK--------RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNL 309 (462)
T ss_dssp TE--------EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSC
T ss_pred Cc--------EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccc
Confidence 32 34445553 1223445555 99998887766 456888776654321 111 1110000 00
Q ss_pred C-cC-----CCCceeeeEEeecCCCcEEEEE-eCCCeEEEEeCCCCCC--ceeEEeecCC--------------ceEEEE
Q 020454 209 G-IF-----TPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRR--PVMSFDFRET--------------PIKAVA 265 (326)
Q Consensus 209 ~-~~-----~~~~v~~~~~~p~~~~~~l~~~-~~dg~v~iwd~~~~~~--~~~~~~~~~~--------------~i~~v~ 265 (326)
. +. .......+.++| ++++|.++ -..+.|.+||+..... .+..+..... .-..++
T Consensus 310 p~~~~~f~~~~~~pa~I~lS~--DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~ 387 (462)
T 2ece_A 310 PEILKPFKAVPPLVTDIDISL--DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLE 387 (462)
T ss_dssp CGGGGGGTEECCCCCCEEECT--TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred cccccccccCCCceeEEEECC--CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEE
Confidence 0 00 023467888888 45555544 5578999999863322 2333333211 247789
Q ss_pred ecCCCCeEEEEc
Q 020454 266 EEPDSFNIYIGN 277 (326)
Q Consensus 266 ~s~~~~~l~~g~ 277 (326)
++|||++|+++.
T Consensus 388 lSpDGk~LyVaN 399 (462)
T 2ece_A 388 ISRDGRRVYVTN 399 (462)
T ss_dssp ECTTSSEEEEEC
T ss_pred EcCCCCEEEEEc
Confidence 999999999888
No 246
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.69 E-value=3.2e-05 Score=68.93 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=82.2
Q ss_pred CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec--CCC---cEEEEEeCCCeEEEEeCCCCCCceeEEeecC
Q 020454 184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI--DDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE 258 (326)
Q Consensus 184 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 258 (326)
+.|..+|..+++.++..+....+.+..... ....+... .++ ..++.++.+|.++++|..++ +.+..+....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~---~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~~~~~~ 366 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGN---NELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG-KLQNAFPFVD 366 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCC---CCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC-CEEEEEESSS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCC---CCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC-CEeccccccc
Confidence 589999999999999876543332222111 11111110 244 37888999999999999887 4555544321
Q ss_pred -------------Cc--------------------------------eEEEEecCCCCeEEEEc----------------
Q 020454 259 -------------TP--------------------------------IKAVAEEPDSFNIYIGN---------------- 277 (326)
Q Consensus 259 -------------~~--------------------------------i~~v~~s~~~~~l~~g~---------------- 277 (326)
.+ -..++++|+...+++..
T Consensus 367 ~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 446 (582)
T 1flg_A 367 NITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTK 446 (582)
T ss_dssp CCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCT
T ss_pred CccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccC
Confidence 00 01346677655555432
Q ss_pred -----------------CCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454 278 -----------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA 325 (326)
Q Consensus 278 -----------------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~ 325 (326)
.+|.|..||+.+++.+.+++. ..++..-.....+.+++.++.||..
T Consensus 447 g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~g~~dg~l 509 (582)
T 1flg_A 447 GSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE--HLPLWAGVLATAGNLVFTGTGDGYF 509 (582)
T ss_dssp TSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE--SSCCCSCCEEETTTEEEEECTTSEE
T ss_pred CCceeccceeecCCCCCCcceEEEEECCCCCEEEEecC--CCCCcccceEeCCCEEEEECCCCcE
Confidence 368899999999999877663 2233222222245677778888753
No 247
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.68 E-value=6.6e-06 Score=73.36 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=53.3
Q ss_pred CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEE--EEEECCCC
Q 020454 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR--SIARHPTL 313 (326)
Q Consensus 236 dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~--~l~~~p~~ 313 (326)
+|.|.-||+.++ +.+.+..... ++..-.....+..++.|+.||.++.||.++|+.+.+++.. . .+. -+.|..++
T Consensus 465 ~G~l~A~D~~tG-~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~-~-g~~a~P~~y~~~G 540 (582)
T 1flg_A 465 VGSLRAMDPVSG-KVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG-S-GIVSPPITWEQDG 540 (582)
T ss_dssp SEEEEEECTTTC-CEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-S-CCCSCCEEEEETT
T ss_pred cceEEEEECCCC-CEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC-C-CcccCceEEEECC
Confidence 688999999988 5566665432 2221112224678888999999999999999999988753 2 232 25565676
Q ss_pred C-EEEE
Q 020454 314 P-IIAS 318 (326)
Q Consensus 314 ~-~l~s 318 (326)
+ |+++
T Consensus 541 ~qYv~~ 546 (582)
T 1flg_A 541 EQYLGV 546 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 5 4443
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.68 E-value=1.1e-06 Score=76.82 Aligned_cols=272 Identities=11% Similarity=0.057 Sum_probs=156.5
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcc--------------------ee-------------------eeccCCCCCceEE
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPK--------------------VV-------------------ERWGDPHSSNCVL 55 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~--------------------~~-------------------~~~~~~~~~~~~~ 55 (326)
+-+.+|+..|.++|+-+.+. .+... +. ..|++..+ .
T Consensus 16 ~~f~s~g~~g~~~v~g~ps~-r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh----~ 90 (595)
T 1fwx_A 16 YGFWSSGQSGEMRILGIPSM-RELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH----V 90 (595)
T ss_dssp EEEECCBTTCEEEEEEETTC-CEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCC----E
T ss_pred EEEeeCCcCceEEEEecCCc-ceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCc----c
Confidence 77899999999999988765 11110 00 11222211 3
Q ss_pred EEEeee-CCCCCeEEEEec-CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecc--cccccccCCCCceEEEEec
Q 020454 56 AASIDD-SQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLF--KRQREESSSRSRTLLTCTT 131 (326)
Q Consensus 56 ~~~~~~-~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~~~~l~~~~~ 131 (326)
++++.+ ..+++++++... ++.|.+.|+.+.+....+.. .....+.++.+. + +.++++++++
T Consensus 91 ~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-------p~g~~phg~~~~~~p--------~~~~v~~~~~ 155 (595)
T 1fwx_A 91 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-------PNAKGIHGLRPQKWP--------RSNYVFCNGE 155 (595)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-------SSCCSEEEEEECCSS--------BCSEEEEEEC
T ss_pred ccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-------CCCCCCcceeeeecC--------CCcEEEEecc
Confidence 455522 223445666554 56799999999887775542 111235556542 3 4567777642
Q ss_pred ------------------CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCC---------
Q 020454 132 ------------------KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--------- 184 (326)
Q Consensus 132 ------------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~--------- 184 (326)
++.+.+.|.+.. -..|++.-++....++++|+++++++.+.+.
T Consensus 156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t~----------~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~ 225 (595)
T 1fwx_A 156 DETPLVNDGTNMEDVANYVNVFTAVDADKW----------EVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEM 225 (595)
T ss_dssp SCEESSCSSSSTTCGGGEEEEEEEEETTTT----------EEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred cccccCCCCcccccccccCceEEEEECCCC----------eEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhc
Confidence 234555554321 2234433233456688999999888877553
Q ss_pred ------eEEEEECCCc-------ee-----eeeecCCC--CCC--CCcCCCCceeeeEEeecCCCcEEEE-EeCCCeEEE
Q 020454 185 ------EVNVWDLDKC-------EK-----IWTAKPPP--KNS--LGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRL 241 (326)
Q Consensus 185 ------~i~iwd~~~~-------~~-----~~~~~~~~--~~~--~~~~~~~~v~~~~~~p~~~~~~l~~-~~~dg~v~i 241 (326)
.|.++|.... +. +..+.... ... ..+..+....++.++| ||+++++ +-.+.+|.+
T Consensus 226 ~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sP--DGk~v~V~~~~s~~VsV 303 (595)
T 1fwx_A 226 TAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAP--DKKHLCVAGKLSPTVTV 303 (595)
T ss_dssp TCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECT--TSSEEEEECTTSSBEEE
T ss_pred cccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcC--CCCEEEEeCCCCCeEEE
Confidence 3555554321 10 11111111 000 0122233456788888 5665554 457889999
Q ss_pred EeCCCCC-----------CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC----------CeEEEEEccee
Q 020454 242 YDTSAQR-----------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----------GKLLGCFIGKC 300 (326)
Q Consensus 242 wd~~~~~-----------~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~----------~~~~~~~~~~~ 300 (326)
+|+.+.+ ..+.+.... .....++|+|+|...++.-.|+.|.+||+.+ .+.+.++..|
T Consensus 304 id~~~~~~~~~~~l~~~~~v~~~v~vG-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~- 381 (595)
T 1fwx_A 304 LDVTRFDAVFYENADPRSAVVAEPELG-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH- 381 (595)
T ss_dssp EEGGGHHHHHHSCCCGGGGEEECCBCC-SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-
T ss_pred EECcccccccccccCcccceEEEcCCC-CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-
Confidence 9998541 122333333 3457789999994334667899999999987 5677777765
Q ss_pred cceE-----EEEEECCCCCEEEEec
Q 020454 301 SGSI-----RSIARHPTLPIIASCG 320 (326)
Q Consensus 301 ~~~v-----~~l~~~p~~~~l~s~s 320 (326)
..+- ..+.++|||++|++..
T Consensus 382 yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 382 YQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp SCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred cccccceeccceEeCCCCCEEEEcC
Confidence 4332 2235679999998873
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.65 E-value=7e-06 Score=65.01 Aligned_cols=151 Identities=12% Similarity=0.008 Sum_probs=100.7
Q ss_pred eEEEEEccCCCceEEEEEcCCCCEEEEecC--CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE
Q 020454 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (326)
Q Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l 230 (326)
.+..+..........+.+++++.+.++.+. ++.|+++|+.+++.+..+.-... .....+++. ++.+.
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~--------~fgeGi~~~---g~~ly 79 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS--------YFGEGLTLL---NEKLY 79 (266)
T ss_dssp EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT--------CCEEEEEEE---TTEEE
T ss_pred EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC--------cceEEEEEe---CCEEE
Confidence 444555433344689999998765555443 67999999999998777542110 112244444 33456
Q ss_pred EEEeCCCeEEEEeCCCCCCceeEEeec-CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEccee----cceEE
Q 020454 231 VAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIR 305 (326)
Q Consensus 231 ~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~----~~~v~ 305 (326)
++...++.+.++|..+. +.+.++... ... ..+++||+.++++..++.|.++|..+.+.+..+.-.. ....+
T Consensus 80 v~t~~~~~v~viD~~t~-~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 80 QVVWLKNIGFIYDRRTL-SNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp EEETTCSEEEEEETTTT-EEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEecCCEEEEEECCCC-cEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 66677899999999977 557777644 222 3455688888888888999999999998888776320 12366
Q ss_pred EEEECCCCCEEEEe
Q 020454 306 SIARHPTLPIIASC 319 (326)
Q Consensus 306 ~l~~~p~~~~l~s~ 319 (326)
.+.|. ++.+.+..
T Consensus 156 ele~~-dg~lyvn~ 168 (266)
T 2iwa_A 156 ELEYI-NGEVWANI 168 (266)
T ss_dssp EEEEE-TTEEEEEE
T ss_pred eEEEE-CCEEEEec
Confidence 88887 66544444
No 250
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.63 E-value=4.6e-06 Score=69.40 Aligned_cols=155 Identities=13% Similarity=0.029 Sum_probs=98.8
Q ss_pred CceEEEEEcCCCCEEEEec--CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-----
Q 020454 163 GTIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----- 235 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~----- 235 (326)
.....++++++++++++.. .++.++||.+.+++.. .+...... .-.+...+.++++.+ +++++++-..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~--~~~~~~~p~gv~~d~--~g~L~v~D~g~~~~~ 91 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGN--AIITFDTVLGIKSDG--NGIVWMLDNGNQSKS 91 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSS--CCCCCSCEEEEEECS--SSEEEEEECHHHHTS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccC--cccceeEeeEEEEcC--CCcEEEEcCCCCcCC
Confidence 4788999999999988853 2342555555444422 22111100 001225688999987 4555555443
Q ss_pred CCeEEEEeCCCCCCceeEEeec------CCceEEEEecCCCCeEE-EEc---CCCcEEEEECCCCeEEEEEccee-----
Q 020454 236 DHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIY-IGN---GSGDLASVDIRTGKLLGCFIGKC----- 300 (326)
Q Consensus 236 dg~v~iwd~~~~~~~~~~~~~~------~~~i~~v~~s~~~~~l~-~g~---~dg~v~iwd~~~~~~~~~~~~~~----- 300 (326)
++.|.+||+.++ +.+..+... ...+..+++++++..++ +.. .++.|.+||+.+++....+.+|.
T Consensus 92 ~~~i~~~d~~tg-~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 92 VPKLVAWDTLNN-QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE 170 (343)
T ss_dssp CCEEEEEETTTT-EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred CCeEEEEECCCC-eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence 579999999876 445555432 23568899998755655 444 57899999999887665543310
Q ss_pred -----------------------cceEEEEEECCCCCEEEEeccCc
Q 020454 301 -----------------------SGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 301 -----------------------~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
...+..|+|+|+++.|+.+..++
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~ 216 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS 216 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC
Confidence 02368899999999888876554
No 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.58 E-value=0.00016 Score=58.98 Aligned_cols=225 Identities=8% Similarity=-0.044 Sum_probs=120.3
Q ss_pred CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec-CCc--EEEE
Q 020454 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGK--ASMR 138 (326)
Q Consensus 62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~-~g~--v~i~ 138 (326)
+.++.++++...++.|..||... +....+.. ...+.++++.+ ++. ++++.. ... +..+
T Consensus 40 ~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~---------~~~p~gia~~~--------dG~-l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 40 APDGTIFVTNHEVGEIVSITPDG-NQQIHATV---------EGKVSGLAFTS--------NGD-LVATGWNADSIPVVSL 100 (306)
T ss_dssp CTTSCEEEEETTTTEEEEECTTC-CEEEEEEC---------SSEEEEEEECT--------TSC-EEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC---------CCCceeEEEcC--------CCc-EEEEeccCCcceEEEE
Confidence 33455566666789999999854 43333221 13466676533 333 444442 223 4444
Q ss_pred EccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCC-C--CCCCCcCCCC
Q 020454 139 SIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPP-P--KNSLGIFTPT 214 (326)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~-~--~~~~~~~~~~ 214 (326)
+..... ...+...........+...+.+..+++-..++.|..+|..+++ .+...... . ...-.+ .
T Consensus 101 d~~~g~--------~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~ 169 (306)
T 2p4o_A 101 VKSDGT--------VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---P 169 (306)
T ss_dssp ECTTSC--------EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---C
T ss_pred cCCCCe--------EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---C
Confidence 432211 1122222222233445555555555555568899999987643 12211110 0 000011 1
Q ss_pred ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC--ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~ 292 (326)
....+ +|. .+.++++-+..+.|..||+..... ....+... .....++++++|++.++-...+.|.++|.. ++.
T Consensus 170 ~pngi--s~d-g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 170 AANGL--KRF-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST 244 (306)
T ss_dssp SEEEE--EEE-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred cCCCc--CcC-CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence 23444 553 334556667788999999874111 11222111 345678999999876666667899999975 655
Q ss_pred EE--EEcceecceEEEEEEC---CCCCEEEEeccC
Q 020454 293 LG--CFIGKCSGSIRSIARH---PTLPIIASCGFL 322 (326)
Q Consensus 293 ~~--~~~~~~~~~v~~l~~~---p~~~~l~s~s~D 322 (326)
.. .+... ....++++|. |++..|+.+...
T Consensus 245 ~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 245 TIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EEEeecccc-cCCceEEEEecccCCCCEEEEECCC
Confidence 33 23322 3468899998 887766655543
No 252
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.57 E-value=0.00015 Score=57.86 Aligned_cols=210 Identities=10% Similarity=0.014 Sum_probs=121.0
Q ss_pred CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCcEEEEEccccc
Q 020454 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~~~~ 144 (326)
.++++...++.|..++...+.....+. .......++++.+ ..+.+ ++-...+.|.+++++...
T Consensus 49 ~ly~~d~~~~~I~~~~~~g~~~~~~~~--------~~~~~p~~ia~d~--------~~~~lyv~d~~~~~I~~~~~~g~~ 112 (267)
T 1npe_A 49 VVYWTDISEPSIGRASLHGGEPTTIIR--------QDLGSPEGIALDH--------LGRTIFWTDSQLDRIEVAKMDGTQ 112 (267)
T ss_dssp EEEEEETTTTEEEEEESSSCCCEEEEC--------TTCCCEEEEEEET--------TTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEEEEECCCCEEEEEecCCCCcEEEEE--------CCCCCccEEEEEe--------cCCeEEEEECCCCEEEEEEcCCCC
Confidence 345555567899999986544322221 1113456666533 23344 444556788888765321
Q ss_pred cccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC---CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (326)
.+..-.........++++|++..|+.+.. .+.|..+++..... ..+... .+ .....+++
T Consensus 113 ---------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~~-----~~---~~P~gia~ 174 (267)
T 1npe_A 113 ---------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQD-----NL---GLPNGLTF 174 (267)
T ss_dssp ---------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECT-----TC---SCEEEEEE
T ss_pred ---------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEEEEC-----CC---CCCcEEEE
Confidence 11111112245789999997655444433 46888888764322 111110 01 34678899
Q ss_pred eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeEEEEEccee
Q 020454 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKC 300 (326)
Q Consensus 222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~ 300 (326)
.|. .+.++++-...+.|..+|+... .....+.. ......++.. +..|+.+. ..+.|..+|..+++.+..+....
T Consensus 175 d~~-~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~ 249 (267)
T 1npe_A 175 DAF-SSQLCWVDAGTHRAECLNPAQP-GRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK 249 (267)
T ss_dssp ETT-TTEEEEEETTTTEEEEEETTEE-EEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS
T ss_pred cCC-CCEEEEEECCCCEEEEEecCCC-ceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc
Confidence 874 3445666677889999998753 22222222 2334566654 45555444 56899999999999998886431
Q ss_pred cceEEEEEECCCCC
Q 020454 301 SGSIRSIARHPTLP 314 (326)
Q Consensus 301 ~~~v~~l~~~p~~~ 314 (326)
......|++.|++-
T Consensus 250 ~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 250 QTRLYGITIALSQC 263 (267)
T ss_dssp CCCCCCEEEECSCC
T ss_pred ccccceeeecCccC
Confidence 22467788887653
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.56 E-value=8.1e-05 Score=58.34 Aligned_cols=177 Identities=11% Similarity=0.095 Sum_probs=108.5
Q ss_pred CeEEEEecCC--cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454 66 PLLAVARKNG--LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (326)
Q Consensus 66 ~~l~~g~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~ 143 (326)
.+..+.+.+| .|+++|+.+++.+..+.. ...---.++.... +...++.-.++.+.++|.+..
T Consensus 54 ~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-------~~~~FgeGit~~g---------~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 54 YFYESTGLNGRSSIRKVDIESGKTLQQIEL-------GKRYFGEGISDWK---------DKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEEEETTEEEEEEECTTTCCEEEEEEC-------CTTCCEEEEEEET---------TEEEEEESSSSEEEEEETTTC
T ss_pred EEEEECCCCCCceEEEEECCCCcEEEEEec-------CCccceeEEEEeC---------CEEEEEEeeCCEEEEEECccC
Confidence 4555555655 899999999999887764 1111123345422 233444446888999997654
Q ss_pred ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454 144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (326)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 223 (326)
. .+..+.....+ ..++ ++++.|+.+..++.|.++|..+.+.+..+.-..... ....++.+.|.
T Consensus 118 ~--------~~~ti~~~~eG--~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~----~~~~lNELe~~- 180 (262)
T 3nol_A 118 R--------QVRSFNYDGEG--WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGE----ELPELNELEWV- 180 (262)
T ss_dssp C--------EEEEEECSSCC--CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTE----ECCCEEEEEEE-
T ss_pred c--------EEEEEECCCCc--eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCc----cccccceeEEE-
Confidence 4 34444443211 2233 456666555557889999999887766644321000 00223445665
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec------------CCceEEEEecCCCCeEEEEcC
Q 020454 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------------ETPIKAVAEEPDSFNIYIGNG 278 (326)
Q Consensus 224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------------~~~i~~v~~s~~~~~l~~g~~ 278 (326)
++++++..-.+..|.+.|++++ +.+..+... ..-.+.|||+|+++.|++.+.
T Consensus 181 --~G~lyan~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 181 --DGEIFANVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp --TTEEEEEETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred --CCEEEEEEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 5656666667889999999987 555666542 134688999999877776554
No 254
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.53 E-value=0.00063 Score=63.24 Aligned_cols=223 Identities=16% Similarity=0.149 Sum_probs=134.3
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~ 146 (326)
.|.+|+.++-|.+||..++++....... ..+.......|.++... .++.+..++.+ .+.+++....
T Consensus 227 ~lwigt~~~Gl~~~~~~~~~~~~~~~~~-~~~~~l~~~~i~~i~~d---------~~g~lWigt~~-Gl~~~~~~~~--- 292 (795)
T 4a2l_A 227 RIWVATEGAGLFLINPKTKEIKNYLHSP-SNPKSISSNYIRSLAMD---------SQNRLWIGTFN-DLNIYHEGTD--- 292 (795)
T ss_dssp EEEEEEBSSCEEEEETTTTEEEEECCCT-TCTTSCSCSBEEEEEEC---------TTSCEEEEESS-CEEEEETTTT---
T ss_pred CEEEEECCCCeEEEeCCCCeEEEeecCC-CCccccCCCeEEEEEEc---------CCCCEEEEeCC-hhheEcCCCC---
Confidence 3777776656889998766553322110 00001123557766542 24567777776 5788875432
Q ss_pred cccccceEEEEEcc-------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454 147 AESSCSTVKSWNVC-------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (326)
Q Consensus 147 ~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (326)
.+..+... ....|.++..+++|++ ..|+.++-|..|+..+............. .+ ....|.++
T Consensus 293 ------~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~--~l-~~~~V~~i 362 (795)
T 4a2l_A 293 ------SFASYSSNPVENGSLSQRSVRSIFMDSQGGM-WLGTYFGGLNYYHPIRNRFKNIRNIPYKN--SL-SDNVVSCI 362 (795)
T ss_dssp ------EEEEECCCTTSTTSCSSSCEEEEEECTTSCE-EEEESSSCEEEECGGGGSSEEECCCTTSS--SC-SCSSEEEE
T ss_pred ------eEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-EEEECCCCeEEeCCCcccceEEcCCCCCC--CC-CCCeeEEE
Confidence 22222211 1346999999988774 45777788999987655432211111111 11 22357777
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe---------ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454 220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD---------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---------~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~ 290 (326)
...+ ++ .|..|+.++-|..||..+. . ...+. .....|.+++..++++.|.+|+.++-|..||..++
T Consensus 363 ~~d~--~g-~lWiGt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 363 VEDK--DK-NLWIGTNDGGLNLYNPITQ-R-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp EECT--TS-CEEEEESSSCEEEECTTTC-C-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred EECC--CC-CEEEEECCCCeEEEcCCCC-c-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence 6654 44 5677888878999998754 2 33332 12357889988888876778888778999999887
Q ss_pred eEEEEEc----ceecceEEEEEECCCCCEEEEe
Q 020454 291 KLLGCFI----GKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 291 ~~~~~~~----~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
+...-.. .+ ...|.++...+++.+.+..
T Consensus 438 ~~~~~~~~~~~l~-~~~v~~i~~d~~g~lwigt 469 (795)
T 4a2l_A 438 QVENFNQRNSQLV-NENVYAILPDGEGNLWLGT 469 (795)
T ss_dssp CEEEECTTTSCCS-CSCEEEEEECSSSCEEEEE
T ss_pred cEEEeecCCCCcC-CCeeEEEEECCCCCEEEEe
Confidence 6543211 12 4579999998888765544
No 255
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.49 E-value=0.00015 Score=57.02 Aligned_cols=208 Identities=10% Similarity=0.084 Sum_probs=123.9
Q ss_pred ceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (326)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~ 131 (326)
..+..+.++.. .+.++++...++.|..+|.. ++++..+.. .+..-.-++++.. ++.++++.-.
T Consensus 27 ~~lSGla~~~~-~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-------~g~~D~EGIa~~~--------~g~~~vs~E~ 89 (255)
T 3qqz_A 27 NNISSLTWSAQ-SNTLFSTINKPAAIVEMTTN-GDLIRTIPL-------DFVKDLETIEYIG--------DNQFVISDER 89 (255)
T ss_dssp SCEEEEEEETT-TTEEEEEEETTEEEEEEETT-CCEEEEEEC-------SSCSSEEEEEECS--------TTEEEEEETT
T ss_pred cCcceeEEeCC-CCEEEEEECCCCeEEEEeCC-CCEEEEEec-------CCCCChHHeEEeC--------CCEEEEEECC
Confidence 34666777644 34466668888999999996 887777654 2223456666543 3344455556
Q ss_pred CCcEEEEEccccccccccccceEEEEEc-----cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC---ceeeeeecCC
Q 020454 132 KGKASMRSIEVTKVSAESSCSTVKSWNV-----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK---CEKIWTAKPP 203 (326)
Q Consensus 132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~---~~~~~~~~~~ 203 (326)
++.+.++++...... ..+..... ........++++|.++.|.++.......||.+.. ...+......
T Consensus 90 ~~~l~~~~v~~~~~i-----~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 90 DYAIYVISLTPNSEV-----KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp TTEEEEEEECTTCCE-----EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred CCcEEEEEcCCCCee-----eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecch
Confidence 678888887653310 01222221 2244579999999987666666555555555531 1111111100
Q ss_pred C-CCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC---------CceEEEEecCCCCeE
Q 020454 204 P-KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------TPIKAVAEEPDSFNI 273 (326)
Q Consensus 204 ~-~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------~~i~~v~~s~~~~~l 273 (326)
. .... ......++++.|. .+++++.....+.+..+|.. + +++..+.... ..--.|+|.++|+ |
T Consensus 165 ~~~~~~---~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~-g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-l 237 (255)
T 3qqz_A 165 ALQRQF---TLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLV-G-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-I 237 (255)
T ss_dssp HHHHTC---CSSCCCEEEEETT-TTEEEEEETTTTEEEEECTT-C-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-E
T ss_pred hhcccc---ccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCC-C-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-E
Confidence 0 0000 1124679999996 56677888888999999977 3 3455544332 2668999999997 5
Q ss_pred EEEcCCCcEEEEECC
Q 020454 274 YIGNGSGDLASVDIR 288 (326)
Q Consensus 274 ~~g~~dg~v~iwd~~ 288 (326)
+..++-+.++.|.-.
T Consensus 238 yIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 238 YIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEEETTTEEEEEEC-
T ss_pred EEEcCCceEEEEEec
Confidence 544777777777543
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.47 E-value=0.0001 Score=57.80 Aligned_cols=176 Identities=11% Similarity=-0.033 Sum_probs=110.5
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
+.+..+.+.+|.|+++|+++++.+..+ . ...---.++.... +...++.-.++.+.++|.+...
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-------~~~~FgeGit~~g---------~~Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQPVWME-R-------LGNIFAEGLASDG---------ERLYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSSCSEEE-E-------CTTCCEEEEEECS---------SCEEEEESSSCEEEEEETTTTE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEeEE-C-------CCCcceeEEEEeC---------CEEEEEEccCCEEEEEECCcCc
Confidence 345666777789999999999998877 3 1111123355422 3344555568899999976544
Q ss_pred cccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 224 (326)
.++.+..... -..++ ++++.|+.+..++.|.++|..+.+.+..+.-..... .-..++.+.|.
T Consensus 128 --------~~~ti~~~~e--GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~----~v~~lNeLe~~-- 189 (268)
T 3nok_A 128 --------RERTTRYSGE--GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ----PVELINELECA-- 189 (268)
T ss_dssp --------EEEEEECSSC--CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE----ECCCEEEEEEE--
T ss_pred --------EEEEEeCCCc--eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc----ccccccccEEe--
Confidence 3444444322 12333 456666666668899999999988766654321100 00234556665
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec-------------CCceEEEEecCCCCeEEEEc
Q 020454 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-------------ETPIKAVAEEPDSFNIYIGN 277 (326)
Q Consensus 225 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-------------~~~i~~v~~s~~~~~l~~g~ 277 (326)
++++++....+..|.+.|++++ +.+..+... ..-.+.|||+|+++.|++.+
T Consensus 190 -dG~lyanvw~s~~I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 190 -NGVIYANIWHSSDVLEIDPATG-TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp -TTEEEEEETTCSEEEEECTTTC-BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred -CCEEEEEECCCCeEEEEeCCCC-cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 5656666667889999999987 555555532 13568999999876665433
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.44 E-value=0.00021 Score=58.66 Aligned_cols=223 Identities=11% Similarity=-0.027 Sum_probs=125.2
Q ss_pred CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCC----C--------CCCCCeeeeecccccccccCCCCceEEEEe
Q 020454 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA----Q--------PEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (326)
Q Consensus 63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~----~--------~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~ 130 (326)
..+.+++++..++.|..|+..++++. .+........ . .....+.++++.+ .++.|+++.
T Consensus 28 ~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~--------~~g~l~v~d 98 (322)
T 2fp8_A 28 STNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL--------QNNQLYIVD 98 (322)
T ss_dssp TTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET--------TTTEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC--------CCCcEEEEE
Confidence 34556888889999999998665542 2221000000 0 0002355666432 245677776
Q ss_pred cCCcEEEEEccccccccccccceEEEEEc----cCCCceEEEEEcC-CCCEEEEecC-----------------CCeEEE
Q 020454 131 TKGKASMRSIEVTKVSAESSCSTVKSWNV----CASGTIAFSKVDI-SEKFSLFGGK-----------------GVEVNV 188 (326)
Q Consensus 131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~sg~~-----------------d~~i~i 188 (326)
..+.+..++.... .++.+.. ........+++.+ ++++.++-.. ++.|..
T Consensus 99 ~~~~i~~~d~~~g---------~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 99 CYYHLSVVGSEGG---------HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp TTTEEEEECTTCE---------ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred CCCCEEEEeCCCC---------EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 6666666664321 1111111 0113467899999 8887665432 367888
Q ss_pred EECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE-EEEeCCCeEEEEeCCCCC-CceeEEeecCCceEEEEe
Q 020454 189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAE 266 (326)
Q Consensus 189 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~ 266 (326)
||..+++....... + .....++++| +++.| ++-+..+.|..|++.... .....+..... ...+++
T Consensus 170 ~d~~~~~~~~~~~~-------~---~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~ 236 (322)
T 2fp8_A 170 YDPSTKETTLLLKE-------L---HVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKR 236 (322)
T ss_dssp EETTTTEEEEEEEE-------E---SCCCEEEECT--TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEE
T ss_pred EeCCCCEEEEeccC-------C---ccCcceEECC--CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEE
Confidence 88876654322111 1 1234678887 45444 454667899999987431 11222222223 678999
Q ss_pred cCCCCeEEEEcC----------CCcEEEEECCCCeEEEEEcceec----ceEEEEEECCCCCEEEEe
Q 020454 267 EPDSFNIYIGNG----------SGDLASVDIRTGKLLGCFIGKCS----GSIRSIARHPTLPIIASC 319 (326)
Q Consensus 267 s~~~~~l~~g~~----------dg~v~iwd~~~~~~~~~~~~~~~----~~v~~l~~~p~~~~l~s~ 319 (326)
+++|++.++... .+.|..+|. .++.+..+... . ..+.++++ .++.+.++.
T Consensus 237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~-~g~~~~~~~~~~~-~~g~L~v~~ 300 (322)
T 2fp8_A 237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLP-PPFAGEHFEQIQE-HDGLLYIGT 300 (322)
T ss_dssp CTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECC-TTTTTSCCCEEEE-ETTEEEEEC
T ss_pred CCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECC-CCCccccceEEEE-eCCEEEEee
Confidence 999986665444 467888987 47777777643 2 24666766 355544443
No 258
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.39 E-value=3.2e-05 Score=70.69 Aligned_cols=143 Identities=12% Similarity=0.130 Sum_probs=90.1
Q ss_pred EEEEEcCCCCEEEEecCCC-------------eEEEEECCCce----eeeeecCCCCCCCCcCCCCceeeeEEeecCCCc
Q 020454 166 AFSKVDISEKFSLFGGKGV-------------EVNVWDLDKCE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (326)
Q Consensus 166 ~~~~~~~~~~~l~sg~~d~-------------~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 228 (326)
..++|+ +++.|+.+..+. .|++|++.+.. .++.... .++.++.++.|+| +++
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~--------~~~~~~~~~~~Sp--Dg~ 246 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIP--------AQHHRYVGATVTE--DDR 246 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSG--------GGCCSEEEEEECT--TSC
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCC--------CCCeEEEEEEEcC--CCC
Confidence 457899 998888777663 39999987654 2322111 0123466788887 566
Q ss_pred EEEEE-e---CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE-EEcCC---CcEEEEECCCCeE--EEEEcc
Q 020454 229 KFVAG-T---NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGS---GDLASVDIRTGKL--LGCFIG 298 (326)
Q Consensus 229 ~l~~~-~---~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~-~g~~d---g~v~iwd~~~~~~--~~~~~~ 298 (326)
+|+.. . ....|+++|+.........+..+....... ++++|..|+ ....+ +.|..+|+.++.. ...+..
T Consensus 247 ~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~ 325 (693)
T 3iuj_A 247 FLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP 325 (693)
T ss_dssp EEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred EEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec
Confidence 66443 2 235899999986543456666665555554 666766665 44443 5799999987654 234554
Q ss_pred eecceEEEEEECCCCCEEEEeccCc
Q 020454 299 KCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 299 ~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
| ...+. .|+++++.|+....++
T Consensus 326 ~-~~~~~--~~s~~g~~lv~~~~~~ 347 (693)
T 3iuj_A 326 E-RQQVL--TVHSGSGYLFAEYMVD 347 (693)
T ss_dssp C-CSSCE--EEEEETTEEEEEEEET
T ss_pred C-CCCEE--EEEEECCEEEEEEEEC
Confidence 5 44444 8888888777665543
No 259
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.33 E-value=0.00057 Score=53.74 Aligned_cols=197 Identities=12% Similarity=0.072 Sum_probs=114.6
Q ss_pred CCeeeeecccccccccCCCCceEEE-EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC
Q 020454 104 DGIVGLHLFKRQREESSSRSRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK 182 (326)
Q Consensus 104 ~~i~~l~~~~~~~~~~~~~~~~l~~-~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~ 182 (326)
+.+.++++.+ .++.|++ ...++.|...|.. . ..++.+.+........+++.+++.++++.-.
T Consensus 27 ~~lSGla~~~--------~~~~L~aV~d~~~~I~~ld~~-g--------~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~ 89 (255)
T 3qqz_A 27 NNISSLTWSA--------QSNTLFSTINKPAAIVEMTTN-G--------DLIRTIPLDFVKDLETIEYIGDNQFVISDER 89 (255)
T ss_dssp SCEEEEEEET--------TTTEEEEEEETTEEEEEEETT-C--------CEEEEEECSSCSSEEEEEECSTTEEEEEETT
T ss_pred cCcceeEEeC--------CCCEEEEEECCCCeEEEEeCC-C--------CEEEEEecCCCCChHHeEEeCCCEEEEEECC
Confidence 5688898754 3455554 5566777766654 1 2455555554567889999988887777667
Q ss_pred CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-eEEEEeCCCCCCceeEEe------
Q 020454 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFD------ 255 (326)
Q Consensus 183 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~------ 255 (326)
++.+.++++.....+....................+++|.|. .+.++++.-.+. .|+.|+-......+....
T Consensus 90 ~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~-~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~ 168 (255)
T 3qqz_A 90 DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ-DHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR 168 (255)
T ss_dssp TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT-TTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH
T ss_pred CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCC-CCEEEEEECcCCceEEEEcccccCCceeeecchhhcc
Confidence 788999988654322111111000000112234679999985 233444443343 455555111111122221
Q ss_pred -ecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEcce--ec------ceEEEEEECCCCCEEEEe
Q 020454 256 -FRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGK--CS------GSIRSIARHPTLPIIASC 319 (326)
Q Consensus 256 -~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~--~~------~~v~~l~~~p~~~~l~s~ 319 (326)
..-..+..++++|. +++++....++.+.++|.. ++++..+.-. +. ..-..|+|.++|.+.+++
T Consensus 169 ~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 169 QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence 12335789999997 4555677778889999976 5566555421 01 256799999999866654
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.32 E-value=0.00025 Score=55.07 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=98.4
Q ss_pred eEEEEEccCCCceEEEEEcCCCCEEEEecCC--CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE
Q 020454 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (326)
Q Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l 230 (326)
.++.+..........+.|++ +.+..+.+.+ +.|+.+|+.+++.+....-... ..--++++. +++++
T Consensus 11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--------~fgeGi~~~---~~~ly 78 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--------YFGAGIVAW---RDRLI 78 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--------CCEEEEEEE---TTEEE
T ss_pred EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--------cceeEEEEe---CCEEE
Confidence 44555444455678999986 5666666665 4899999999998877543221 111233443 34466
Q ss_pred EEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEccee----cceEEE
Q 020454 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRS 306 (326)
Q Consensus 231 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~----~~~v~~ 306 (326)
.....++.+.+||..+. +.+.++...... ..++ +++..|+++..++.|.++|..+.+.+.++.-.. -..++.
T Consensus 79 ~ltw~~~~v~v~D~~tl-~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 79 QLTWRNHEGFVYDLATL-TPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEESSSSEEEEEETTTT-EEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEeeCCEEEEEECCcC-cEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 66678999999999987 667787765333 3444 578888888889999999999998888776420 124556
Q ss_pred EEECCCCCEEE
Q 020454 307 IARHPTLPIIA 317 (326)
Q Consensus 307 l~~~p~~~~l~ 317 (326)
|.|. ++++.+
T Consensus 155 Le~~-~G~lya 164 (243)
T 3mbr_X 155 LEWV-NGELLA 164 (243)
T ss_dssp EEEE-TTEEEE
T ss_pred eEEe-CCEEEE
Confidence 6664 444433
No 261
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.24 E-value=0.0032 Score=58.48 Aligned_cols=225 Identities=10% Similarity=0.043 Sum_probs=133.9
Q ss_pred EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccc
Q 020454 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA 147 (326)
Q Consensus 68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~ 147 (326)
|.+|+.+ -|.+|+..++++...... ...........|.++... .++.+..++.++.|..++.....
T Consensus 276 lWigt~~-Gl~~~~~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~D---------~~g~lWigt~~~Gl~~~~~~~~~--- 341 (795)
T 4a2l_A 276 LWIGTFN-DLNIYHEGTDSFASYSSN-PVENGSLSQRSVRSIFMD---------SQGGMWLGTYFGGLNYYHPIRNR--- 341 (795)
T ss_dssp EEEEESS-CEEEEETTTTEEEEECCC-TTSTTSCSSSCEEEEEEC---------TTSCEEEEESSSCEEEECGGGGS---
T ss_pred EEEEeCC-hhheEcCCCCeEEEEecC-CCCCCCCCCCcEEEEEEe---------CCcCEEEEECCCCeEEeCCCccc---
Confidence 7777776 588899876665332211 000001223457766542 34678889988888888754322
Q ss_pred ccccceEEEEEcc------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454 148 ESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (326)
Q Consensus 148 ~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (326)
...+... ....|.++..++++++- .|+.++-|..||..+++..............+ ....|.++..
T Consensus 342 ------~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l-~~~~v~~i~~ 413 (795)
T 4a2l_A 342 ------FKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGI-GSNNIKAVYV 413 (795)
T ss_dssp ------SEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CC-SCSCEEEEEE
T ss_pred ------ceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCC-CCccEEEEEE
Confidence 1111110 23468999998877744 57778789999987665432211110000001 1235777776
Q ss_pred eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-----ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF 296 (326)
Q Consensus 222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~ 296 (326)
.+ +++.|..|+.++-|..||..++ + ...+. .....|.++...++|+..+ |+. +-+.+||..+++.....
T Consensus 414 d~--~g~~lWigt~~~Gl~~~d~~~~-~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~ 487 (795)
T 4a2l_A 414 DE--KKSLVYIGTHAGGLSILHRNSG-Q-VENFNQRNSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRSFTTIE 487 (795)
T ss_dssp ET--TTTEEEEEETTTEEEEEETTTC-C-EEEECTTTSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTEEEECC
T ss_pred cC--CCCEEEEEeCcCceeEEeCCCC-c-EEEeecCCCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCeEEEcc
Confidence 54 4543777888788999998865 3 33333 2345789999888886554 444 45889999887654321
Q ss_pred cc-----eecceEEEEEECCCCCEEEEec
Q 020454 297 IG-----KCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 297 ~~-----~~~~~v~~l~~~p~~~~l~s~s 320 (326)
.. -....|.++...+++.+.+...
T Consensus 488 ~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 516 (795)
T 4a2l_A 488 KEKDGTPVVSKQITTLFRDSHKRLWIGGE 516 (795)
T ss_dssp BCTTCCBCCCCCEEEEEECTTCCEEEEES
T ss_pred ccccccccCCceEEEEEECCCCCEEEEeC
Confidence 11 0135789999998887665543
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.13 E-value=0.0027 Score=53.50 Aligned_cols=206 Identities=8% Similarity=-0.024 Sum_probs=113.5
Q ss_pred EEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCce-EEEEecCC
Q 020454 55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT-LLTCTTKG 133 (326)
Q Consensus 55 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~-l~~~~~~g 133 (326)
.++.++.. .+.++++-...+.|..+++..+.....+. .+.....++++.. ..+. +++-...+
T Consensus 119 ~gl~~d~~-~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--------~~~~~p~glavd~--------~~g~lY~~d~~~~ 181 (386)
T 3v65_B 119 IALDFHHR-RELVFWSDVTLDRILRANLNGSNVEEVVS--------TGLESPGGLAVDW--------VHDKLYWTDSGTS 181 (386)
T ss_dssp EEEEEETT-TTEEEEEETTTTEEEEEETTSCCEEEEEC--------SSCSCCCCEEEET--------TTTEEEEEETTTT
T ss_pred EEEEEecC-CCeEEEEeCCCCcEEEEecCCCCcEEEEe--------CCCCCccEEEEEe--------CCCeEEEEcCCCC
Confidence 34444422 33345555667889999886554322222 1112234455422 2233 34444556
Q ss_pred cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec-CC-CeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KG-VEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 134 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (326)
.|.+.+++... ...+. .........++++|.+..|+... .. +.|..+++............
T Consensus 182 ~I~~~~~dg~~--------~~~l~-~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-------- 244 (386)
T 3v65_B 182 RIEVANLDGAH--------RKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH-------- 244 (386)
T ss_dssp EEEECBTTSCS--------CEEEE-CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS--------
T ss_pred eEEEEeCCCCc--------eEEee-cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC--------
Confidence 66665543211 11111 12234678899998766554433 33 67888887643322222110
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~ 291 (326)
..+..++++.|. +++++++-+..+.|..+|+... .....+.........+++ ..+..+++-...+.|..+|..+++
T Consensus 245 -~~~PnGlavd~~-~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 245 -LFWPNGLTIDYA-GRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp -CSCEEEEEEEGG-GTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred -CCCeeeEEEeCC-CCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 135678999975 4556666677889999998743 222222223345677787 344455566677889999977776
Q ss_pred EEEEEcc
Q 020454 292 LLGCFIG 298 (326)
Q Consensus 292 ~~~~~~~ 298 (326)
.+..+..
T Consensus 321 ~~~~i~~ 327 (386)
T 3v65_B 321 NQEIIRN 327 (386)
T ss_dssp SCEEEEC
T ss_pred ceEEEcc
Confidence 6665553
No 263
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.12 E-value=0.00061 Score=61.87 Aligned_cols=93 Identities=9% Similarity=-0.061 Sum_probs=55.6
Q ss_pred CCcEEEEEeCCC-----------eEEEEeCCCCCCceeEEe---ecCCc-eEEEEecCCCCeEEEEcCC-----------
Q 020454 226 DHRKFVAGTNDH-----------QVRLYDTSAQRRPVMSFD---FRETP-IKAVAEEPDSFNIYIGNGS----------- 279 (326)
Q Consensus 226 ~~~~l~~~~~dg-----------~v~iwd~~~~~~~~~~~~---~~~~~-i~~v~~s~~~~~l~~g~~d----------- 279 (326)
++++++.|+.++ .|.+||+.+. . -.... ..... -.+++..|+++.++.|+.+
T Consensus 410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~-~-W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~ 487 (656)
T 1k3i_A 410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTS-P-NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV 487 (656)
T ss_dssp TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC-C-EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC-C-eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcc
Confidence 456777776432 6788888754 2 22221 12222 2344566899999988764
Q ss_pred CcEEEEECCCCeEEEE--EcceecceEEEEEECCCCCEEEEecc
Q 020454 280 GDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 280 g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
..+.+||..+.+.... +... ........+.|++++++.||.
T Consensus 488 ~~v~~ydp~t~~W~~~~~~~~~-R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 488 FTPEIYVPEQDTFYKQNPNSIV-RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCEEEEGGGTEEEECCCCSSC-CCTTEEEEECTTSCEEEEECC
T ss_pred cceEEEcCCCCceeecCCCCCc-cccccHhhcCCCcEEEecCCC
Confidence 4689999988764321 1111 111223445689999999984
No 264
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.09 E-value=0.0022 Score=50.94 Aligned_cols=144 Identities=8% Similarity=-0.018 Sum_probs=90.5
Q ss_pred CceEEEEEcCCCC-EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454 163 GTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (326)
Q Consensus 163 ~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i 241 (326)
..+..++++++++ ++++-..++.|..+++............ + .....+++.|. .+.++++-...+.|.+
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~------~---~~p~~ia~d~~-~~~lyv~d~~~~~I~~ 105 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD------L---GSPEGIALDHL-GRTIFWTDSQLDRIEV 105 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT------C---CCEEEEEEETT-TTEEEEEETTTTEEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC------C---CCccEEEEEec-CCeEEEEECCCCEEEE
Confidence 3578899999765 4455556789999998765432222110 0 24678888874 3446666667889999
Q ss_pred EeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcC---CCcEEEEECCCCeEEEEE-cceecceEEEEEECCCCCEE
Q 020454 242 YDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPII 316 (326)
Q Consensus 242 wd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~---dg~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l 316 (326)
+++... . ...+. ........++++|++..|+.+.. .+.|..+++... ....+ ... ......++++|++..|
T Consensus 106 ~~~~g~-~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~-~~~P~gia~d~~~~~l 181 (267)
T 1npe_A 106 AKMDGT-Q-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDN-LGLPNGLTFDAFSSQL 181 (267)
T ss_dssp EETTSC-S-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTT-CSCEEEEEEETTTTEE
T ss_pred EEcCCC-C-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECC-CCCCcEEEEcCCCCEE
Confidence 998743 2 22222 22245688999997666665554 368888888643 22222 222 3457889999987665
Q ss_pred EEec
Q 020454 317 ASCG 320 (326)
Q Consensus 317 ~s~s 320 (326)
..+.
T Consensus 182 yv~d 185 (267)
T 1npe_A 182 CWVD 185 (267)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.98 E-value=0.0055 Score=51.62 Aligned_cols=206 Identities=9% Similarity=0.031 Sum_probs=114.2
Q ss_pred CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCcEEEEEcccc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVT 143 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~v~i~~~~~~ 143 (326)
..+|+.+. ...|+.+++...+....... ...+.++++.. .++.|+ +-...+.|+.++++..
T Consensus 87 ~~~l~~~~-~~~I~~i~~~~~~~~~~~~~---------~~~~~gl~~d~--------~~~~ly~~D~~~~~I~r~~~~g~ 148 (386)
T 3v65_B 87 EPVLLFAN-RIDIRQVLPHRSEYTLLLNN---------LENAIALDFHH--------RRELVFWSDVTLDRILRANLNGS 148 (386)
T ss_dssp CCEEEEEC-BSCEEEECTTSCCCEEEECS---------CSCEEEEEEET--------TTTEEEEEETTTTEEEEEETTSC
T ss_pred cceeEeec-CccceeeccCCCcEEEEecC---------CCccEEEEEec--------CCCeEEEEeCCCCcEEEEecCCC
Confidence 33455544 46788888866554333321 13466677643 233444 4445667777765432
Q ss_pred ccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454 144 KVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (326)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (326)
. +..+-.........+++++.+ ++.++-...+.|.+.++........+... + ....++++.
T Consensus 149 ~---------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~------l---~~P~giavd 210 (386)
T 3v65_B 149 N---------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS------L---EKPRAIALH 210 (386)
T ss_dssp C---------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSS------C---SCEEEEEEE
T ss_pred C---------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCC------C---CCCcEEEEE
Confidence 1 111111122345677888754 55556566778888887654322222111 1 235688888
Q ss_pred ecCCCcEEEEEeCC-CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEE-cCCCcEEEEECCCCeEEEEEccee
Q 020454 223 SIDDHRKFVAGTND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKC 300 (326)
Q Consensus 223 p~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g-~~dg~v~iwd~~~~~~~~~~~~~~ 300 (326)
|. ++.++++-... +.|..+++... .........-.....++++|++..|+.+ +..+.|..+|+........+...
T Consensus 211 p~-~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~- 287 (386)
T 3v65_B 211 PM-EGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG- 287 (386)
T ss_dssp TT-TTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-
T ss_pred cC-CCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-
Confidence 75 45455665555 78999988744 2122222233456899999877777654 45678999998753332223322
Q ss_pred cceEEEEEE
Q 020454 301 SGSIRSIAR 309 (326)
Q Consensus 301 ~~~v~~l~~ 309 (326)
......|++
T Consensus 288 ~~~P~giav 296 (386)
T 3v65_B 288 LPHPFAITV 296 (386)
T ss_dssp CSSEEEEEE
T ss_pred CCCceEEEE
Confidence 334456666
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.94 E-value=0.0049 Score=50.41 Aligned_cols=178 Identities=9% Similarity=0.017 Sum_probs=101.2
Q ss_pred CceEEEEecCCcEEEEEccccccccccccceEEEEEccC-------------------CCceEEEEEcC-CCCEEEEecC
Q 020454 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-------------------SGTIAFSKVDI-SEKFSLFGGK 182 (326)
Q Consensus 123 ~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~v~~~~~~~-~~~~l~sg~~ 182 (326)
+..+++...++.|..|+.... .+..|.... ......+++++ +++++ ++..
T Consensus 30 g~~l~v~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~d~ 99 (322)
T 2fp8_A 30 NKGFYTSVQDGRVIKYEGPNS---------GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IVDC 99 (322)
T ss_dssp CSSEEEECTTSEEEEECCTTT---------CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EEET
T ss_pred CCEEEEEcCCCeEEEECCCCC---------ceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EEEC
Confidence 345788888888888875432 222332110 12478899997 55544 4444
Q ss_pred CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-----------------CCeEEEEeCC
Q 020454 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----------------DHQVRLYDTS 245 (326)
Q Consensus 183 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-----------------dg~v~iwd~~ 245 (326)
.+.|..+|..+++........... .......+++.+. +++++++-.. ++.|..||..
T Consensus 100 ~~~i~~~d~~~g~~~~~~~~~~~~-----~~~~p~~i~~d~~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLATSVDGV-----PFKWLYAVTVDQR-TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp TTEEEEECTTCEECEEEESEETTE-----ECSCEEEEEECTT-TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred CCCEEEEeCCCCEEEEecccCCCC-----cccccceEEEecC-CCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 456888887755432111110000 0123566777651 3445555432 3778889887
Q ss_pred CCCCceeEEeecCCceEEEEecCCCCeEEEE-cCCCcEEEEECCCCe--EEEEEcceecceEEEEEECCCCCEEEEec
Q 020454 246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGK--LLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g-~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
++ + +..+...-.....++++|++++|+++ +..+.|.+|++.... ....+... .+ ...+++++++.+.++..
T Consensus 174 ~~-~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 174 TK-E-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp TT-E-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTTSCEEEEEE
T ss_pred CC-E-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCCCCEEEEec
Confidence 54 2 22222222345678999999877655 556899999987521 11112211 33 67889999888666653
No 267
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.92 E-value=0.00067 Score=56.81 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=84.9
Q ss_pred eEEEEEccC---CCceEEEEEcCCCCEEEEecCCCeEEEEECCCcee--------------eeeecCCCCCCCCcCCCCc
Q 020454 153 TVKSWNVCA---SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK--------------IWTAKPPPKNSLGIFTPTW 215 (326)
Q Consensus 153 ~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 215 (326)
..+.++... -..+..+..+|+|++||..+. ..|.|-.+..+.. .+.+... ....+..
T Consensus 53 ~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~-----~~~~~s~ 126 (452)
T 3pbp_A 53 LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE-----EVGPKSS 126 (452)
T ss_dssp SCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC-----C--CCCC
T ss_pred cceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCc-----ccCCCCc
Confidence 566666652 336888999999999998765 4888988873211 1111110 1112457
Q ss_pred eeeeEEeecC-CCcEEEEEeCCCeEEEEeCCC-CCCceeEEe---------ecCCceEEEEecCCCCeEEEEc--CCCcE
Q 020454 216 FTSAAFLSID-DHRKFVAGTNDHQVRLYDTSA-QRRPVMSFD---------FRETPIKAVAEEPDSFNIYIGN--GSGDL 282 (326)
Q Consensus 216 v~~~~~~p~~-~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~---------~~~~~i~~v~~s~~~~~l~~g~--~dg~v 282 (326)
|..+.|+|-. .+..|++-..|+.|++||+.. ...|. .+. .....|.+++|..++-.|++.+ ..|.|
T Consensus 127 I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDI 205 (452)
T 3pbp_A 127 IKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDI 205 (452)
T ss_dssp EEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEE
T ss_pred eeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCE
Confidence 9999999953 244899999999999999874 33444 222 1235788999999888777755 77877
Q ss_pred EEE
Q 020454 283 ASV 285 (326)
Q Consensus 283 ~iw 285 (326)
+-.
T Consensus 206 YAl 208 (452)
T 3pbp_A 206 FAF 208 (452)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.87 E-value=0.0079 Score=49.91 Aligned_cols=195 Identities=8% Similarity=-0.056 Sum_probs=109.8
Q ss_pred CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCce-EEEEecCCcEEEEEccccc
Q 020454 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT-LLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~-l~~~~~~g~v~i~~~~~~~ 144 (326)
.++++-...+.|..+++..+.....+. .+.....++++.. .++. +++-...+.|.+.+++...
T Consensus 86 ~ly~~D~~~~~I~r~~~~g~~~~~~~~--------~~~~~p~glavd~--------~~g~ly~~d~~~~~I~~~~~dG~~ 149 (349)
T 3v64_C 86 LVFWSDVTLDRILRANLNGSNVEEVVS--------TGLESPGGLAVDW--------VHDKLYWTDSGTSRIEVANLDGAH 149 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSCCCEEEEET--------TTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEEEEeccCCceEEEecCCCCceEEEe--------CCCCCccEEEEec--------CCCeEEEEcCCCCeEEEEcCCCCc
Confidence 344555567888888886544322222 1112334555432 2233 4444556777777755321
Q ss_pred cccccccceEEEEEccCCCceEEEEEcCCCCEE-EEecCC-CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFS-LFGGKG-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (326)
...+. .........++++|.+..| .+-... +.|..+++........... ...+..++++.
T Consensus 150 --------~~~l~-~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~---------~~~~PnGla~d 211 (349)
T 3v64_C 150 --------RKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT---------HLFWPNGLTID 211 (349)
T ss_dssp --------CEEEE-CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS---------SCSCEEEEEEE
T ss_pred --------eEEEE-eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC---------CCCCcceEEEe
Confidence 11111 1223457899999866544 443344 7788888764322211111 01356789999
Q ss_pred ecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 223 p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
|. ++.++++-+..+.|..+|+... .....+.........+++. .+..+++-...+.|..++..+|+....+.
T Consensus 212 ~~-~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 212 YA-GRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TT-TTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CC-CCEEEEEECCCCEEEEEeCCCC-ceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 75 4556666677889999998743 2222222233456777873 44445566667889999977776655554
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.85 E-value=0.0002 Score=66.01 Aligned_cols=146 Identities=13% Similarity=0.089 Sum_probs=86.5
Q ss_pred ceEEEEEc-CCCCEEEEecC-----CCeEEEEECCCc-eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC
Q 020454 164 TIAFSKVD-ISEKFSLFGGK-----GVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (326)
Q Consensus 164 ~v~~~~~~-~~~~~l~sg~~-----d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d 236 (326)
.+...+|+ |+|++||.+.. ...|+++|+.++ +.+.. . + +....++.|+| +++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~--~--~~~~~~~~Wsp--Dg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------K--V--SGTNGEIVWGP--DHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------C--E--EEECSCCEECS--STTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------c--c--cCceeeEEEec--CCCEEEEEEEC
Confidence 46788999 99998875332 235999999987 53211 0 0 01134678988 45566655544
Q ss_pred -----CeEEEEeCCCCCC-ceeEEee-cCCceEEEEecCCCCeEEEEcC---CCcEEEEECCCC--eE-EEEEcceecce
Q 020454 237 -----HQVRLYDTSAQRR-PVMSFDF-RETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTG--KL-LGCFIGKCSGS 303 (326)
Q Consensus 237 -----g~v~iwd~~~~~~-~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~---dg~v~iwd~~~~--~~-~~~~~~~~~~~ 303 (326)
..|+++++.+... ....+.. .......+.|+|||++|+..+. ...|+++|+.++ +. +..+.....+.
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 3688888876421 1223322 2234567899999999885442 346888999875 22 12332221455
Q ss_pred EEEEEECCCCCEEEEeccC
Q 020454 304 IRSIARHPTLPIIASCGFL 322 (326)
Q Consensus 304 v~~l~~~p~~~~l~s~s~D 322 (326)
..++.|+..+.+++....|
T Consensus 322 ~~s~~~~~g~~l~~~t~~~ 340 (751)
T 2xe4_A 322 RYDVQMHGTSHLVILTNEG 340 (751)
T ss_dssp CEEEEEETTTEEEEEECTT
T ss_pred eEEEeeeeCCEEEEEeCCC
Confidence 6666665555555554443
No 270
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.83 E-value=0.019 Score=53.15 Aligned_cols=231 Identities=9% Similarity=0.065 Sum_probs=126.3
Q ss_pred EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccc
Q 020454 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA 147 (326)
Q Consensus 68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~ 147 (326)
|.+|+.+ -|.+||..++++....... ..........|.++... .++.+..++..+.+.+++........
T Consensus 224 lwigt~~-Gl~~~d~~~~~~~~~~~~~-~~~~~l~~~~i~~i~~d---------~~g~lWigt~~~Gl~~~~~~~~~~~~ 292 (781)
T 3v9f_A 224 IWIGTSK-GLALFNANTETFTNFHNNP-GNIHGALSSYIFSIKQL---------KDNKLWIATELNGIMILDLQQNQFLL 292 (781)
T ss_dssp EEEEETT-EEEEEETTTTEEEC------------CCCCEEEEEEC---------TTSEEEEEESSSCEEEEETTCC----
T ss_pred EEEEeCC-cHheECCCCCcEEEEEcCC-CccccccCceEEEEEEC---------CCCCEEEEeCCCCeEEECCCCCeeee
Confidence 6777766 5888998766653221110 00000123457666542 35678888886778888865432100
Q ss_pred ccccceEEEE-Ec-----cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCC-CCCCCcCCCCceeeeE
Q 020454 148 ESSCSTVKSW-NV-----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP-KNSLGIFTPTWFTSAA 220 (326)
Q Consensus 148 ~~~~~~~~~~-~~-----~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~ 220 (326)
-.. .....+ .. -....|.++..+++++ |..|+.++-|..++..+........... .....+ ....|.++.
T Consensus 293 ~~~-~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~v~~i~ 369 (781)
T 3v9f_A 293 PEQ-IRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSL-SNKVVSSVC 369 (781)
T ss_dssp ------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCC-SSSCEEEEE
T ss_pred eec-cccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCC-CCcceEEEE
Confidence 000 000000 00 0134689999988776 4567777889999877544322111000 000011 123577776
Q ss_pred EeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE----eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF 296 (326)
Q Consensus 221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~ 296 (326)
..+ ++ .|..|+.++-|..||..+. . ...+ ......|.++...++|+ |.+|+.++-+..+|.++++.....
T Consensus 370 ~d~--~g-~lWigt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~ 443 (781)
T 3v9f_A 370 DDG--QG-KLWIGTDGGGINVFENGKR-V-AIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIE 443 (781)
T ss_dssp ECT--TS-CEEEEEBSSCEEEEETTEE-E-EECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECC
T ss_pred EcC--CC-CEEEEeCCCcEEEEECCCC-e-EEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEec
Confidence 653 44 5667776677888997643 1 1111 12345788988877775 555777777999998877643321
Q ss_pred c--ceecceEEEEEECCCCCEEEEe
Q 020454 297 I--GKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 297 ~--~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
. .. ...|.++...+++.+.+..
T Consensus 444 ~~~~~-~~~v~~i~~d~~g~lwigt 467 (781)
T 3v9f_A 444 LEKNE-LLDVRVFYEDKNKKIWIGT 467 (781)
T ss_dssp STTTC-CCCEEEEEECTTSEEEEEE
T ss_pred cCCCC-CCeEEEEEECCCCCEEEEE
Confidence 1 12 4579999988887655543
No 271
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=0.022 Score=52.76 Aligned_cols=231 Identities=12% Similarity=0.022 Sum_probs=134.0
Q ss_pred eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC-CCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG-DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (326)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~ 131 (326)
.+.++..+... .|.+|+.++-|..|+..++.+........ ..........|.++... .++.+..++.
T Consensus 314 ~v~~i~~D~~g---~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d---------~~g~lWigt~ 381 (781)
T 3v9f_A 314 SARYIFQDSFN---NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDD---------GQGKLWIGTD 381 (781)
T ss_dssp CEEEEEECSSC---CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEEC---------TTSCEEEEEB
T ss_pred eEEEEEEeCCC---CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEc---------CCCCEEEEeC
Confidence 44444444332 38889988889999987655432211000 00001122456666542 2467888888
Q ss_pred CCcEEEEEccccccccccccceEEEEE---ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454 132 KGKASMRSIEVTKVSAESSCSTVKSWN---VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (326)
Q Consensus 132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 208 (326)
++.+..++..... ...+. .-....|.++...+++++. .|+.++.|..+|..+++....... .
T Consensus 382 ~~Gl~~~~~~~~~---------~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~-~---- 446 (781)
T 3v9f_A 382 GGGINVFENGKRV---------AIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQIIELE-K---- 446 (781)
T ss_dssp SSCEEEEETTEEE---------EECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEEECCST-T----
T ss_pred CCcEEEEECCCCe---------EEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEEEeccC-C----
Confidence 8888888864321 11110 1123578899888777755 467777899999877654322111 0
Q ss_pred CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee-c-----CCceEEEEecCCCCeEEEEcCCCcE
Q 020454 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-R-----ETPIKAVAEEPDSFNIYIGNGSGDL 282 (326)
Q Consensus 209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~-----~~~i~~v~~s~~~~~l~~g~~dg~v 282 (326)
+ ....|.++...+ ++ .|..++. +-+..||..+. + ...+.. . ...|.++...++|+. ..|+.++-+
T Consensus 447 -~-~~~~v~~i~~d~--~g-~lwigt~-~Gl~~~~~~~~-~-~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~Gl 517 (781)
T 3v9f_A 447 -N-ELLDVRVFYEDK--NK-KIWIGTH-AGVFVIDLASK-K-VIHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGGV 517 (781)
T ss_dssp -T-CCCCEEEEEECT--TS-EEEEEET-TEEEEEESSSS-S-CCEEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSCE
T ss_pred -C-CCCeEEEEEECC--CC-CEEEEEC-CceEEEeCCCC-e-EEecccCcccccccceeEEEEEcCCCCE-EEEEcCCCE
Confidence 0 123466766543 45 5666666 56889998765 2 222221 1 357899998888864 455554458
Q ss_pred EEEECCCCeEEEEEcc---eecceEEEEEECCCCCEEEEec
Q 020454 283 ASVDIRTGKLLGCFIG---KCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 283 ~iwd~~~~~~~~~~~~---~~~~~v~~l~~~p~~~~l~s~s 320 (326)
..||..+++.. .+.. -....|.++...+++.+.++..
T Consensus 518 ~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~ 557 (781)
T 3v9f_A 518 GIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG 557 (781)
T ss_dssp EEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET
T ss_pred EEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC
Confidence 88998776543 3331 1135689999988887665543
No 272
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.74 E-value=0.011 Score=47.71 Aligned_cols=207 Identities=13% Similarity=0.093 Sum_probs=119.0
Q ss_pred CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (326)
Q Consensus 63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~ 142 (326)
+..+.+|.-. ..+++|||+++...++.+... ..|.-..|.+ ...+.--.+..|+-|+++.
T Consensus 76 P~~~ViALra-g~~LQiFnletK~klks~~~~---------e~VvfWkWis----------~~~L~lVT~taVyHWs~~~ 135 (365)
T 2xzh_A 76 PASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWIS----------LNTVALVTDNAVYHWSMEG 135 (365)
T ss_dssp SSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---------SCEEEEEECS----------SSEEEEEESSEEEEEESST
T ss_pred CCccEEEEec-CCeEEEechHHhhhhcceecC---------CccEEEEecC----------CCeEEEEcCCcEEEEcccC
Confidence 3444555554 789999999988777776641 3555455533 3344444566789999764
Q ss_pred cccccccccceEEEEEccC---CCceEEEEEcCCCCEEEEecC-------CCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454 143 TKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGGK-------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (326)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (326)
. ..++++++... ...|.....+++.++++..|- .|.+.+|..+.+.. ..+.+|......+..
T Consensus 136 ~-------s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~ 207 (365)
T 2xzh_A 136 E-------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKM 207 (365)
T ss_dssp T-------CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECCSEEEEEEECC
T ss_pred C-------CCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-ceeeeeeeeeEEEec
Confidence 2 34677777532 356888888988888766443 36688888875432 112222111000000
Q ss_pred CCceeeeEEeecCCCcEEEEEeC---CCeEEEEeCCCC---CCce--eEEe--e----cCCceEEEEecCCCCeEEEEcC
Q 020454 213 PTWFTSAAFLSIDDHRKFVAGTN---DHQVRLYDTSAQ---RRPV--MSFD--F----RETPIKAVAEEPDSFNIYIGNG 278 (326)
Q Consensus 213 ~~~v~~~~~~p~~~~~~l~~~~~---dg~v~iwd~~~~---~~~~--~~~~--~----~~~~i~~v~~s~~~~~l~~g~~ 278 (326)
+. .+. ...+|+-+.. .++++|-++... ..+. +..+ . ...--.++..++.-..++.-+.
T Consensus 208 ~g-------~~~-~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK 279 (365)
T 2xzh_A 208 EG-------NAE-ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 279 (365)
T ss_dssp TT-------CSS-CEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET
T ss_pred CC-------CCC-CceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC
Confidence 00 000 1112332222 258999987432 1111 1111 1 1223455688888888888899
Q ss_pred CCcEEEEECCCCeEEEEEcceecceEEE
Q 020454 279 SGDLASVDIRTGKLLGCFIGKCSGSIRS 306 (326)
Q Consensus 279 dg~v~iwd~~~~~~~~~~~~~~~~~v~~ 306 (326)
-|.+++||+.++.+++.-+-- ..+|-.
T Consensus 280 ~G~ihlyDleTgt~i~~nrIS-~d~iF~ 306 (365)
T 2xzh_A 280 YGYIHLYDLETGTCIYMNRIS-GETIFV 306 (365)
T ss_dssp TSEEEEEETTTCCEEEEEECC-SSCEEE
T ss_pred CcEEEEEEcccCcEEEEeccC-CCceEE
Confidence 999999999999998765532 334443
No 273
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.74 E-value=0.012 Score=48.16 Aligned_cols=197 Identities=12% Similarity=0.122 Sum_probs=113.6
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCc---e-EEEEec--CCcEEEEEc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR---T-LLTCTT--KGKASMRSI 140 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~---~-l~~~~~--~g~v~i~~~ 140 (326)
+++.....+-+.+||+ +|+.+..+.. +.+.++..-+.-.. .+. . +++.-. +++|.+|++
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~----------g~~nnVD~r~~~~l----~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT----------GKLNNVDIRYDFPL----NGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC----------SCEEEEEEEEEEEE----TTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC----------CCcccEEEeccccc----CCceEeEEEEeCCCCCCCeEEEEEE
Confidence 4566667789999999 8887777642 34444433220000 011 2 222333 578999987
Q ss_pred cccccccccccceEEEEE-----ccCC-CceEEEEE--cCC-CC-EEEEecCCCeEEEEECC-------CceeeeeecCC
Q 020454 141 EVTKVSAESSCSTVKSWN-----VCAS-GTIAFSKV--DIS-EK-FSLFGGKGVEVNVWDLD-------KCEKIWTAKPP 203 (326)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~-----~~~~-~~v~~~~~--~~~-~~-~l~sg~~d~~i~iwd~~-------~~~~~~~~~~~ 203 (326)
+.... .+...- +... ..+..+++ +|. ++ ++++..+++.+..|++. +.+.+.++...
T Consensus 107 Dp~~~-------~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg 179 (355)
T 3amr_A 107 DGKNG-------TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN 179 (355)
T ss_dssp CTTTC-------CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS
T ss_pred CCCCC-------ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC
Confidence 53221 122110 0011 34555555 664 43 67788899999999983 23444443332
Q ss_pred CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC----CceeEEee--cCCceEEEEe--cCCCC-eEE
Q 020454 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMSFDF--RETPIKAVAE--EPDSF-NIY 274 (326)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~--~~~~i~~v~~--s~~~~-~l~ 274 (326)
..+..+...+. ...|+.+-.+.-|..||.+... +.+..+.. -...+..|++ .++++ +|+
T Consensus 180 ----------sq~EgcvvDd~--~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi 247 (355)
T 3amr_A 180 ----------SQTEGMAADDE--YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM 247 (355)
T ss_dssp ----------SCEEEEEEETT--TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred ----------CCcceEEEcCC--CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence 23556677653 3388888888777777755221 12222211 1235778887 45555 676
Q ss_pred EEc-CCCcEEEEECC-CCeEEEEEc
Q 020454 275 IGN-GSGDLASVDIR-TGKLLGCFI 297 (326)
Q Consensus 275 ~g~-~dg~v~iwd~~-~~~~~~~~~ 297 (326)
+++ .++++.+||.+ +.+.+..|.
T Consensus 248 vSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 248 ASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEcCCCCEEEEEECCCCCcEEEEEE
Confidence 666 56799999997 677777775
No 274
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.69 E-value=0.023 Score=52.44 Aligned_cols=192 Identities=11% Similarity=0.069 Sum_probs=96.0
Q ss_pred eeeC-CCCCeEEEEec-CC----cEEEEecccc-ceeee-ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454 59 IDDS-QNDPLLAVARK-NG----LTDILNPLNG-DLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (326)
Q Consensus 59 ~~~~-~~~~~l~~g~~-dg----~i~i~~~~~~-~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~ 130 (326)
+..+ +++++|+.+.. +| +|+++|+.++ +.+.. +. ....++.+.+ ++..|+...
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-----------~~~~~~~Wsp--------Dg~~l~y~~ 239 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-----------GTNGEIVWGP--------DHTSLFYVT 239 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-----------EECSCCEECS--------STTEEEEEE
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-----------CceeeEEEec--------CCCEEEEEE
Confidence 4456 67777776554 33 4999999887 63221 11 1122344433 445666655
Q ss_pred cC-----CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec---CCCeEEEEECCCce-ee--ee
Q 020454 131 TK-----GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG---KGVEVNVWDLDKCE-KI--WT 199 (326)
Q Consensus 131 ~~-----g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~---~d~~i~iwd~~~~~-~~--~~ 199 (326)
.+ ..|+.+++.... .....++..........+.++|++++|+... ....|.++|+.++. .. ..
T Consensus 240 ~d~~~~~~~v~~~~lgt~~------~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 313 (751)
T 2xe4_A 240 KDETLRENKVWRHVMGKLQ------SEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI 313 (751)
T ss_dssp ECTTCCEEEEEEEETTSCG------GGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE
T ss_pred ECCCCCCCEEEEEECCCCc------hhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE
Confidence 54 245556554321 1123455433334466789999999887654 23468888987652 11 11
Q ss_pred ecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC----CeEEEEeCCCCCCceeE-EeecCC--ceEEEEecCCCCe
Q 020454 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQRRPVMS-FDFRET--PIKAVAEEPDSFN 272 (326)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~-~~~~~~--~i~~v~~s~~~~~ 272 (326)
+.... .....++.|+. ++.+++....+ ..|..+|+.+... ... +..+.. .+..+.+. .+..
T Consensus 314 l~~~~--------~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~~~li~~~~~~~l~~~~~~-~~~l 381 (751)
T 2xe4_A 314 VRPRE--------KGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQPSD-WSHVLVDHSEDVFMESIAVR-SNYL 381 (751)
T ss_dssp SSCCC--------TTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTSTTC-CCCEEECCCSSEEEEEEEEC-SSEE
T ss_pred eecCC--------CCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCCccc-ceeeEECCCCCcEEEEEEEE-CCEE
Confidence 11111 01122333321 23234444333 3677777764211 222 222322 34555554 2334
Q ss_pred EEEEcCCCc--EEEEEC
Q 020454 273 IYIGNGSGD--LASVDI 287 (326)
Q Consensus 273 l~~g~~dg~--v~iwd~ 287 (326)
+++...+|. |.++|+
T Consensus 382 v~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 382 VVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCEEEEEEEec
Confidence 456677775 556665
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.67 E-value=0.017 Score=47.80 Aligned_cols=204 Identities=9% Similarity=0.035 Sum_probs=114.3
Q ss_pred CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCcEEEEEccccc
Q 020454 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTK 144 (326)
Q Consensus 66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~v~i~~~~~~~ 144 (326)
++|+.+.. ..|+..++...+....+.. ...+.++.+.. .++.|+ +-...+.|+.++++...
T Consensus 45 ~~ll~~~~-~~I~~i~~~g~~~~~~~~~---------~~~~~~l~~d~--------~~~~ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 45 PVLLFANR-IDIRQVLPHRSEYTLLLNN---------LENAIALDFHH--------RRELVFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp CEEEEECB-SCEEEECTTSCCEEEEECS---------CSCEEEEEEET--------TTTEEEEEETTTTEEEEEETTSCS
T ss_pred ceeEeecc-cceEEEeCCCCeeEEeecC---------CCceEEEEEec--------cccEEEEEeccCCceEEEecCCCC
Confidence 34555443 5688888865544332221 13466677643 233444 43456777777654322
Q ss_pred cccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454 145 VSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 223 (326)
...+-.........+++++.+ ++.++-...+.|.+.++............ + ....++++.|
T Consensus 107 ---------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~------l---~~P~~iavdp 168 (349)
T 3v64_C 107 ---------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS------L---EKPRAIALHP 168 (349)
T ss_dssp ---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTT------C---SCEEEEEEET
T ss_pred ---------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCC------C---CCcceEEEec
Confidence 111111122345678888754 55566666788999998754332222111 1 2356888988
Q ss_pred cCCCcEEEEEeCC-CeEEEEeCCCCCCceeEE-eecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeEEEEEccee
Q 020454 224 IDDHRKFVAGTND-HQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKC 300 (326)
Q Consensus 224 ~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~-~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~ 300 (326)
. ++.++++-... +.|..+++... . ...+ ...-.....++++|++..|+.+. ..+.|..+|+........+...
T Consensus 169 ~-~g~ly~td~~~~~~I~r~~~dG~-~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~- 244 (349)
T 3v64_C 169 M-EGTIYWTDWGNTPRIEASSMDGS-G-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG- 244 (349)
T ss_dssp T-TTEEEEEECSSSCEEEEEETTSC-S-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-
T ss_pred C-cCeEEEeccCCCCEEEEEeCCCC-C-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-
Confidence 5 45566666656 88999988743 2 2222 22234568899998777776554 5678999998753322223322
Q ss_pred cceEEEEEE
Q 020454 301 SGSIRSIAR 309 (326)
Q Consensus 301 ~~~v~~l~~ 309 (326)
......|++
T Consensus 245 ~~~P~giav 253 (349)
T 3v64_C 245 LPHPFAITV 253 (349)
T ss_dssp CSSEEEEEE
T ss_pred CCCceEEEE
Confidence 334456666
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.64 E-value=0.0051 Score=52.63 Aligned_cols=143 Identities=10% Similarity=0.059 Sum_probs=85.7
Q ss_pred ceEEEEEcC-CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-CC----
Q 020454 164 TIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH---- 237 (326)
Q Consensus 164 ~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-dg---- 237 (326)
....++++| ++..|+++...+.|+.+|+..+........ ......++|.+ ++++|+++.. ++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~----------~~~P~~ia~d~--~G~~lyvad~~~~~~~~ 205 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG----------LSKVRTICWTH--EADSMIITNDQNNNDRP 205 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC----------CSCEEEEEECT--TSSEEEEEECCSCTTSE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC----------CCCcceEEEeC--CCCEEEEEeCCCCcccc
Confidence 456788998 355555555448899999987665433321 13466888887 4554554443 22
Q ss_pred eEEEEeCCCCCCceeEEeecCCceEEEEecC-CCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEE
Q 020454 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII 316 (326)
Q Consensus 238 ~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 316 (326)
.+.+++..........+.. ......++++| ++..+++-..++.|..|+..++.............-+.|+|+|++++|
T Consensus 206 ~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 206 NNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp EEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred eEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 3444554322121223322 23457789999 566666666778999999987765332221112346789999999855
Q ss_pred EEe
Q 020454 317 ASC 319 (326)
Q Consensus 317 ~s~ 319 (326)
..+
T Consensus 285 yv~ 287 (430)
T 3tc9_A 285 YIV 287 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 277
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.64 E-value=0.0011 Score=60.38 Aligned_cols=162 Identities=13% Similarity=0.029 Sum_probs=87.7
Q ss_pred eEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC--CCeEEEEECCCceeeeeecC
Q 020454 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKP 202 (326)
Q Consensus 125 ~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--d~~i~iwd~~~~~~~~~~~~ 202 (326)
.+++-...+.|.+.+++... ++.+-.........++++|.+.+|+.... .+.|..+++........+..
T Consensus 467 LY~tD~~~~~I~v~d~dg~~---------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~ 537 (699)
T 1n7d_A 467 IYWTDSVLGTVSVADTKGVK---------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 537 (699)
T ss_dssp CEECCTTTSCEEEEBSSSCC---------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCS
T ss_pred EEEEeccCCeEEEEecCCCc---------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeC
Confidence 34444556777777654321 11111111234567889987654444332 26777777653222111111
Q ss_pred CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee---cCCceEEEEecCCCCeEEEEcCC
Q 020454 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS 279 (326)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~~i~~v~~s~~~~~l~~g~~d 279 (326)
.+ .+..++++.|. .++++++-+..+.|..+|+... . ...+.. .-.....|++..+ ..+++-...
T Consensus 538 ------~l---~~PnGlavd~~-~~~LY~aD~~~~~I~~~d~dG~-~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~ 604 (699)
T 1n7d_A 538 ------NI---QWPNGITLDLL-SGRLYWVDSKLHSISSIDVNGG-N-RKTILEDEKRLAHPFSLAVFED-KVFWTDIIN 604 (699)
T ss_dssp ------SC---SSCCCEEECTT-TCCEEEEETTTTEEEEECSSSS-C-CEEECCCSSSCSSCCCCEEETT-EEEEECSTT
T ss_pred ------CC---CCccEEEEecc-CCEEEEEecCCCeEEEEccCCC-c-eEEEEecCCcCCCceEeEEECC-EEEEEeCCC
Confidence 01 34568899885 4556677777889999998743 2 222221 1122344555433 333355566
Q ss_pred CcEEEEECCCCeEEEEEcceecceEEEEEE
Q 020454 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (326)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~ 309 (326)
+.|..+|..+++.+..+... ......|++
T Consensus 605 ~~V~~~d~~~G~~~~~i~~~-~~~P~~i~v 633 (699)
T 1n7d_A 605 EAIFSANRLTGSDVNLLAEN-LLSPEDMVL 633 (699)
T ss_dssp TCEEEEETTTEEEEECCCTT-CSSCCCCCB
T ss_pred CeEEEEEccCCCceEEeecC-CCCCcEEEE
Confidence 88999999888887766533 223444543
No 278
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.54 E-value=0.025 Score=46.16 Aligned_cols=165 Identities=7% Similarity=-0.050 Sum_probs=96.8
Q ss_pred cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC-EEEEecCCCeEEEEECCC----ceeeeeecCCCC
Q 020454 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDK----CEKIWTAKPPPK 205 (326)
Q Consensus 131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~----~~~~~~~~~~~~ 205 (326)
....|+..+++... ...+. ........+++++.++ ++++-..++.|..+++.. ......+...
T Consensus 8 ~~~~I~~i~~~~~~--------~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~-- 75 (316)
T 1ijq_A 8 NRHEVRKMTLDRSE--------YTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-- 75 (316)
T ss_dssp CBSSEEEEETTSCC--------CEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS--
T ss_pred CCCeEEEEECCCcc--------eEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC--
Confidence 34567777765433 11121 2345678999998664 555555678999999875 1211111110
Q ss_pred CCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE-eecCCceEEEEecCCCCeEEEEcCC--CcE
Q 020454 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGS--GDL 282 (326)
Q Consensus 206 ~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~i~~v~~s~~~~~l~~g~~d--g~v 282 (326)
+ ....++++.+. .++++++-...+.|.++|+... . ...+ .........++++|.+..|+..... +.|
T Consensus 76 ----~---~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~-~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 76 ----I---QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGV-K-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 145 (316)
T ss_dssp ----C---SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSS-S-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred ----C---CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCC-c-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeE
Confidence 1 22457787753 3446666677899999998743 2 2333 2233567899999977766655543 688
Q ss_pred EEEECCCCeEEEEE-cceecceEEEEEECCCCCEEEEe
Q 020454 283 ASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 283 ~iwd~~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
..+++.. +....+ ... -...+.|+++|++..|..+
T Consensus 146 ~~~~~dG-~~~~~~~~~~-~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 146 KKGGLNG-VDIYSLVTEN-IQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp EEEETTS-CCEEEEECSS-CSCEEEEEEETTTTEEEEE
T ss_pred EEEcCCC-CCeEEEEECC-CCCceEEEEeccCCEEEEE
Confidence 8888863 333333 222 4467789999876655444
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.47 E-value=0.031 Score=45.59 Aligned_cols=229 Identities=9% Similarity=-0.006 Sum_probs=121.6
Q ss_pred cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc---ceeeeecccCCCCC
Q 020454 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG---DLRVAISNAGDSGA 99 (326)
Q Consensus 23 ~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~---~~~~~~~~~~~~~~ 99 (326)
...|+..++.+. ........ .....++.++.. .+.++++-..++.|..+++... .....+..
T Consensus 9 ~~~I~~i~~~~~-----~~~~~~~~---~~~p~g~~~d~~-~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~------ 73 (316)
T 1ijq_A 9 RHEVRKMTLDRS-----EYTSLIPN---LRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------ 73 (316)
T ss_dssp BSSEEEEETTSC-----CCEEEECS---CSSEEEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEEC------
T ss_pred CCeEEEEECCCc-----ceEehhcC---CCceEEEEEEeC-CCEEEEEECCCCcEEEEECCCCCCCcccEEEEe------
Confidence 356888888765 22111111 112234444322 2335555566789999988641 21121111
Q ss_pred CCCCCCeeeeecccccccccCCCCce-EEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE
Q 020454 100 QPEDDGIVGLHLFKRQREESSSRSRT-LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL 178 (326)
Q Consensus 100 ~~~~~~i~~l~~~~~~~~~~~~~~~~-l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 178 (326)
..-....++++.. .++. +++-...+.|.+.+++... ...+.. ........++++|.+..|+
T Consensus 74 -~~~~~p~glavd~--------~~~~ly~~d~~~~~I~~~~~~g~~--------~~~~~~-~~~~~P~~iavdp~~g~ly 135 (316)
T 1ijq_A 74 -RDIQAPDGLAVDW--------IHSNIYWTDSVLGTVSVADTKGVK--------RKTLFR-ENGSKPRAIVVDPVHGFMY 135 (316)
T ss_dssp -SSCSCCCEEEEET--------TTTEEEEEETTTTEEEEEETTSSS--------EEEEEE-CTTCCEEEEEEETTTTEEE
T ss_pred -CCCCCcCEEEEee--------cCCeEEEEECCCCEEEEEeCCCCc--------eEEEEE-CCCCCcceEEeCCCCCEEE
Confidence 1112334555421 2233 4444667788887764321 111122 1234678999998765544
Q ss_pred EecC-C-CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee
Q 020454 179 FGGK-G-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256 (326)
Q Consensus 179 sg~~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 256 (326)
.+.. . +.|..+++........... ...+...+++.|. +++++++-+..+.|..+|+... . ...+..
T Consensus 136 ~~d~~~~~~I~~~~~dG~~~~~~~~~---------~~~~P~gla~d~~-~~~lY~~D~~~~~I~~~d~dg~-~-~~~~~~ 203 (316)
T 1ijq_A 136 WTDWGTPAKIKKGGLNGVDIYSLVTE---------NIQWPNGITLDLL-SGRLYWVDSKLHSISSIDVNGG-N-RKTILE 203 (316)
T ss_dssp EEECSSSCEEEEEETTSCCEEEEECS---------SCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSC-S-CEEEEE
T ss_pred EEccCCCCeEEEEcCCCCCeEEEEEC---------CCCCceEEEEecc-CCEEEEEECCCCeEEEEecCCC-c-eEEEee
Confidence 4333 2 6788888764322111111 0145778999874 4545666677889999998743 2 233322
Q ss_pred ---cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 257 ---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 257 ---~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
.-.....+++. .+..+++-...+.|..+|..+++.+..+.
T Consensus 204 ~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 204 DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp CTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred cCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 12345677874 34445566667889999987776555544
No 280
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.38 E-value=0.049 Score=45.92 Aligned_cols=210 Identities=13% Similarity=0.089 Sum_probs=121.7
Q ss_pred CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~ 143 (326)
..+.+|.- ...++.|||+++...++.+... ..|.-..|.+ ...+.--.+..|+-|+++.
T Consensus 76 ~~~iiALr-ag~~lQiFnle~K~klks~~~~---------e~VvfWkWis----------~~~l~lVT~taVyHWsi~~- 134 (494)
T 1bpo_A 76 ASKVIALK-AGKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWIS----------LNTVALVTDNAVYHWSMEG- 134 (494)
T ss_dssp SSSCEEEE-ETTEEEEEETTTTEEEEEEECS---------SCCCEEEEEE----------TTEEEEECSSEEEEEESSS-
T ss_pred CCcEEEEe-cCCeEEEEchHHhhhhcceecC---------CCceEEEecC----------CCeEEEEcCCeeEEecccC-
Confidence 33455554 4799999999988777766641 2455455543 2344444567789999864
Q ss_pred ccccccccceEEEEEccC---CCceEEEEEcCCCCEEEEecC-------CCeEEEEECCCceeeeeecCCCCCCCCcCCC
Q 020454 144 KVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGGK-------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (326)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 213 (326)
...++++++... ...|.....+++.++++..|- .|.+.+|..+.+.. ..+.+|......+..+
T Consensus 135 ------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~ 207 (494)
T 1bpo_A 135 ------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKME 207 (494)
T ss_dssp ------SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEEEEEECT
T ss_pred ------CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeeeEEEecC
Confidence 234777777532 456888888999998875442 36688888875432 1122221110000000
Q ss_pred CceeeeEEeecCCCcEEEEEeC---CCeEEEEeCCCC---CCce--eEEe------ecCCceEEEEecCCCCeEEEEcCC
Q 020454 214 TWFTSAAFLSIDDHRKFVAGTN---DHQVRLYDTSAQ---RRPV--MSFD------FRETPIKAVAEEPDSFNIYIGNGS 279 (326)
Q Consensus 214 ~~v~~~~~~p~~~~~~l~~~~~---dg~v~iwd~~~~---~~~~--~~~~------~~~~~i~~v~~s~~~~~l~~g~~d 279 (326)
. .+. ...+++-+.. .++++|.++... ..+. +..+ ....--.++..++.-..++.-+.-
T Consensus 208 g-------~~~-~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~ 279 (494)
T 1bpo_A 208 G-------NAE-ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 279 (494)
T ss_dssp T-------CSS-EEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETT
T ss_pred C-------CCC-CceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecC
Confidence 0 000 0113333333 378999997532 1111 1111 112234566888888889988999
Q ss_pred CcEEEEECCCCeEEEEEcceecceEEEEEEC
Q 020454 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (326)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 310 (326)
|.+++||+.++.+++.-+-- ..+|..-+-+
T Consensus 280 G~i~lyDleTgt~i~~nrIs-~~~iF~t~~~ 309 (494)
T 1bpo_A 280 GYIHLYDLETGTCIYMNRIS-GETIFVTAPH 309 (494)
T ss_dssp SEEEEEETTTCCEEEEEECC-SSCEEEEEEE
T ss_pred ceEEEEecccceeeeeeccc-CCceEEeccc
Confidence 99999999999998765532 4455444443
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.35 E-value=0.044 Score=44.70 Aligned_cols=232 Identities=9% Similarity=-0.032 Sum_probs=123.1
Q ss_pred cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCC
Q 020454 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE 102 (326)
Q Consensus 23 ~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 102 (326)
...|+..++.+.......++. ......++.|+.. .+.+..+-..++.|..+++..+.....+.. ..
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~------~~~~~~~ld~d~~-~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-------~~ 77 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG------GLEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVV-------SG 77 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE------EEEEEEEEEEEGG-GTEEEEEETTTTEEEEEETTSSSCCCEEEE-------EC
T ss_pred cCeEEEEECCCCceEEEEEec------CCCccEEEEEEeC-CCEEEEEECCCCcEEEEEccCCCceEEEEc-------CC
Confidence 567888888765111111111 1112334444332 233455556678888888865432111111 11
Q ss_pred CCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec-
Q 020454 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG- 181 (326)
Q Consensus 103 ~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~- 181 (326)
-....++++... .+..+++-...+.|.+.+++... .+..-.........++++|.+..|+...
T Consensus 78 l~~p~glavd~~-------~g~ly~~d~~~~~I~~~~~dG~~---------~~~l~~~~~~~P~giavdp~~g~ly~td~ 141 (318)
T 3sov_A 78 LLSPDGLACDWL-------GEKLYWTDSETNRIEVSNLDGSL---------RKVLFWQELDQPRAIALDPSSGFMYWTDW 141 (318)
T ss_dssp CSCCCEEEEETT-------TTEEEEEETTTTEEEEEETTSCS---------CEEEECSSCSSEEEEEEEGGGTEEEEEEC
T ss_pred CCCccEEEEEcC-------CCeEEEEECCCCEEEEEECCCCc---------EEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 123344554220 12334444556777777755321 1111112334678899998765554444
Q ss_pred -CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE-eecCC
Q 020454 182 -KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRET 259 (326)
Q Consensus 182 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~ 259 (326)
..+.|...++........... .+ .+..++++.|. ++.++++-+..+.|..+|+... . ...+ .....
T Consensus 142 ~~~~~I~r~~~dG~~~~~~~~~------~l---~~Pnglavd~~-~~~lY~aD~~~~~I~~~d~dG~-~-~~~~~~~~~~ 209 (318)
T 3sov_A 142 GEVPKIERAGMDGSSRFIIINS------EI---YWPNGLTLDYE-EQKLYWADAKLNFIHKSNLDGT-N-RQAVVKGSLP 209 (318)
T ss_dssp SSSCEEEEEETTSCSCEEEECS------SC---SCEEEEEEETT-TTEEEEEETTTTEEEEEETTSC-S-CEEEECSCCS
T ss_pred CCCCEEEEEEcCCCCeEEEEEC------CC---CCccEEEEecc-CCEEEEEECCCCEEEEEcCCCC-c-eEEEecCCCC
Confidence 357788888764322211111 01 34678999984 4546666677889999998743 2 2222 22334
Q ss_pred ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
....+++.. +..+++-...+.|..++..+++....+.
T Consensus 210 ~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 210 HPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 556777743 3344465667889999998776554443
No 282
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.33 E-value=0.044 Score=44.35 Aligned_cols=100 Identities=14% Similarity=-0.025 Sum_probs=60.5
Q ss_pred eEEEEEcCCCCEE-EEecCCCeEEEEECCC-cee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454 165 IAFSKVDISEKFS-LFGGKGVEVNVWDLDK-CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (326)
Q Consensus 165 v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~ 240 (326)
...+ +++++.| ++-...+.|..||+.. ++. ...+.. + .....+++.+ +++++++....+.|.
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-------~---~~P~gi~vd~--dG~l~va~~~~~~V~ 236 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-------Q---TNIDDFAFDV--EGNLYGATHIYNSVV 236 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-------S---CCCSSEEEBT--TCCEEEECBTTCCEE
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-------c---CCCCCeEECC--CCCEEEEeCCCCeEE
Confidence 4455 6677655 4455678899999874 221 000000 0 1234667776 566777777788999
Q ss_pred EEeCCCCCCcee--EEeecCCceEEEEec---CCCCeEEEEcCCC
Q 020454 241 LYDTSAQRRPVM--SFDFRETPIKAVAEE---PDSFNIYIGNGSG 280 (326)
Q Consensus 241 iwd~~~~~~~~~--~~~~~~~~i~~v~~s---~~~~~l~~g~~dg 280 (326)
++|.. + +... .+...-...++++|. |+++.|++.+..+
T Consensus 237 ~~~~~-G-~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 237 RIAPD-R-STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECTT-C-CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EECCC-C-CEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 99976 4 3211 222333567899998 8888887666543
No 283
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.33 E-value=0.032 Score=53.80 Aligned_cols=220 Identities=13% Similarity=0.142 Sum_probs=122.0
Q ss_pred cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEe--eeCCCCCeEEEEe----------cCCcEEEEeccccceeee
Q 020454 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASI--DDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVA 90 (326)
Q Consensus 23 ~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~g~----------~dg~i~i~~~~~~~~~~~ 90 (326)
.+.|++.|..+. +....+.- +..+.+++++. .......+|++|. ..|.|.+|++.++++...
T Consensus 806 ~s~i~lidp~t~-----~~i~~~~l-~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv 879 (1158)
T 3ei3_A 806 VHNLLIIDQHTF-----EVLHAHQF-LQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV 879 (1158)
T ss_dssp EEEEEEEETTTC-----CEEEEEEC-CTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEE
T ss_pred eEEEEEEeCCCC-----eEEEEEeC-CCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEE
Confidence 356777776544 33333321 12233333222 1223456899987 458899999975554332
Q ss_pred ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE
Q 020454 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (326)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 170 (326)
... .-++++.++..++ ++++++ ....+++|++.... .++ .+...-..+..+..
T Consensus 880 ~~~-------~v~g~v~al~~~~----------g~Lla~-ig~~l~vy~l~~~~--------~L~-~~~~~~~~i~~~~l 932 (1158)
T 3ei3_A 880 AEK-------EVKGAVYSMVEFN----------GKLLAS-INSTVRLYEWTTEK--------ELR-TECNHYNNIMALYL 932 (1158)
T ss_dssp EEE-------EESSCEEEEEEET----------TEEEEE-ETTEEEEEEECTTS--------CEE-EEEEECCCSCEEEE
T ss_pred EEE-------EcCCcCEEEeeeC----------CEEEEE-cCCEEEEEECCCCc--------eEE-EEeeccccEEEEEE
Confidence 222 2347888888754 455554 45889999987543 222 11111112322233
Q ss_pred cCCCCEEEEecCCCeEEEE--ECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC
Q 020454 171 DISEKFSLFGGKGVEVNVW--DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (326)
Q Consensus 171 ~~~~~~l~sg~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~ 248 (326)
...+++++.|..-..|.++ +....+.....+. ..+.|++++.|.-. . .++.+..+|.+.++......
T Consensus 933 ~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D--------~~~~~vta~~~ld~--~-t~l~aD~~gNl~vl~~~~~~ 1001 (1158)
T 3ei3_A 933 KTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARD--------FNPNWMSAVEILDD--D-NFLGAENAFNLFVCQKDSAA 1001 (1158)
T ss_dssp EEETTEEEEEESSBCEEEEEEETTTTEEEEEEEC--------CSCBCEEEEEEEET--T-EEEEEETTSEEEEEEECTTC
T ss_pred eccCCEEEEEEhhheEEEEEEEcCCCeEEEEEee--------cccccEEEEEEEcc--C-cEEEEcCCCcEEEEecCCCC
Confidence 3356888888777676664 4433443333322 13578999999853 2 78889999999988754310
Q ss_pred -------CceeEEeec-CCceEEEE---ecCC---------CCeEEEEcCCCcEEEEE
Q 020454 249 -------RPVMSFDFR-ETPIKAVA---EEPD---------SFNIYIGNGSGDLASVD 286 (326)
Q Consensus 249 -------~~~~~~~~~-~~~i~~v~---~s~~---------~~~l~~g~~dg~v~iwd 286 (326)
+....-..| ...|+++. +.+. ...++-|+.+|.|.++-
T Consensus 1002 ~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1002 TTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp CSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred CCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 111111222 34566665 3332 23467778888887764
No 284
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.23 E-value=0.024 Score=46.06 Aligned_cols=155 Identities=12% Similarity=0.155 Sum_probs=95.7
Q ss_pred CceEEEEe-cCCcEEEEEccccccccccccceEEEEEccC-------CCceEEEEE---cCCCCEEEEec----------
Q 020454 123 SRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCA-------SGTIAFSKV---DISEKFSLFGG---------- 181 (326)
Q Consensus 123 ~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~~l~sg~---------- 181 (326)
++.++.++ ..+.|..|+..... ...+ .... ...+..+.+ +|+++++++..
T Consensus 24 ~g~~~vs~l~~g~V~~~~~~~~~--------~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 24 RQVFYQSNLYKGRIEVYNPKTQS--------HFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp TTEEEEEETTTTEEEEECTTTCC--------EEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CCEEEEEeccCCEEEEEcCCCCe--------EEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 35666665 68999989864221 1112 1211 114679999 68877777533
Q ss_pred ---CCCeEEEEECC---CceeeeeecCC--CCC--CCCcCCCCceeeeEEeecCCCcEEEEEeCC-CeEEEEeCCCCCCc
Q 020454 182 ---KGVEVNVWDLD---KCEKIWTAKPP--PKN--SLGIFTPTWFTSAAFLSIDDHRKFVAGTND-HQVRLYDTSAQRRP 250 (326)
Q Consensus 182 ---~d~~i~iwd~~---~~~~~~~~~~~--~~~--~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-g~v~iwd~~~~~~~ 250 (326)
.+..|..||+. +++.++.+.-. ... ...-........++..+ +|+..++++.- +.|...+.... .
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~--~GnaYVt~s~~~~~I~rV~pdG~--~ 170 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR--DGNSYVAFALGMPAIARVSADGK--T 170 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT--TSCEEEEEEESSCEEEEECTTSC--C
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC--CCCEEEeCCCCCCeEEEEeCCCC--E
Confidence 26779999999 77776654311 000 00000012355677765 67788888877 88777777633 2
Q ss_pred eeEEeec------CCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454 251 VMSFDFR------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 251 ~~~~~~~------~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~ 290 (326)
+..+... ....+.|+++|+|+.|++....|.+..+|+++.
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 3333211 123679999999999998877999999998853
No 285
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.19 E-value=0.066 Score=43.51 Aligned_cols=152 Identities=12% Similarity=0.081 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCEEEEec-CCCeEEEEECCCceeeee-ecCCCCCCCCcCCCCceeeeEE---eecCCCcEEEEEe-----
Q 020454 165 IAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAF---LSIDDHRKFVAGT----- 234 (326)
Q Consensus 165 v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~---~p~~~~~~l~~~~----- 234 (326)
-.+.+|++....|..++ ..++|..||...+..... ........ .....+.++.+ .| +++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g---~~~~~~sGl~~~~~D~--~grL~vv~~~~~af 89 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNG---DGEQQMSGLSLLTHDN--SKRLFAVMKNAKSF 89 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSS---CCSEEEEEEEESSSSS--CCEEEEEEEETTTT
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccC---CCcceeeEEEEeccCC--CCcEEEEEcccccc
Confidence 44678887665555555 789999999875533222 21111000 00123578888 45 355665433
Q ss_pred --------CCCeEEEEeCC---CCCCceeEEee-------------cCCceEEEEecCCCCeEEEEcCC-CcEEEEECCC
Q 020454 235 --------NDHQVRLYDTS---AQRRPVMSFDF-------------RETPIKAVAEEPDSFNIYIGNGS-GDLASVDIRT 289 (326)
Q Consensus 235 --------~dg~v~iwd~~---~~~~~~~~~~~-------------~~~~i~~v~~s~~~~~l~~g~~d-g~v~iwd~~~ 289 (326)
.+..|..||+. ++ +.+..... .......++..++|+..++++.. +.|..++...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred cccccccCCCCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 26789999998 66 34444432 11247899999999999988888 8888887654
Q ss_pred CeEEEEEc--c---eecceEEEEEECCCCCEEEEeccCc
Q 020454 290 GKLLGCFI--G---KCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 290 ~~~~~~~~--~---~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
. .+..+- . ...-..+.|+++|++..|+....+|
T Consensus 169 ~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g 206 (334)
T 2p9w_A 169 K-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPR 206 (334)
T ss_dssp C-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSS
T ss_pred C-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCC
Confidence 3 222221 1 1022366999999998888775554
No 286
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.12 E-value=0.059 Score=48.84 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=42.9
Q ss_pred EEEEEcCCCCEEEEecC-CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CC-----Ce
Q 020454 166 AFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-ND-----HQ 238 (326)
Q Consensus 166 ~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~d-----g~ 238 (326)
..+.+..++++++.||. +..+.+||..+.+-.... . +..+.+-.++...+ ++++++.|+ .+ ..
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~-------~~~~R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~ 315 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-D-------MQVARGYQSSATMS--DGRVFTIGGSWSGGVFEKN 315 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-C-------CSSCCSSCEEEECT--TSCEEEECCCCCSSSCCCC
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC-C-------CCccccccceEEec--CCeEEEEeCcccCCccccc
Confidence 34667788999999984 467999998876432221 1 11122222334443 455777776 33 46
Q ss_pred EEEEeCCC
Q 020454 239 VRLYDTSA 246 (326)
Q Consensus 239 v~iwd~~~ 246 (326)
+.+||+.+
T Consensus 316 ~e~yd~~t 323 (656)
T 1k3i_A 316 GEVYSPSS 323 (656)
T ss_dssp EEEEETTT
T ss_pred ceEeCCCC
Confidence 88888764
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.10 E-value=0.17 Score=46.74 Aligned_cols=203 Identities=11% Similarity=0.021 Sum_probs=109.8
Q ss_pred EEEEeeeCCCCCeEEEEecCCcEEEEecccc----ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCC-ceEEEE
Q 020454 55 LAASIDDSQNDPLLAVARKNGLTDILNPLNG----DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS-RTLLTC 129 (326)
Q Consensus 55 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~-~~l~~~ 129 (326)
.++.++.. .+.++++-...+.|+.+++... .....+. .......+|++.. .. ..+++-
T Consensus 427 ~gl~~d~~-~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--------~~l~~P~GLAvD~--------~~~~LY~tD 489 (791)
T 3m0c_C 427 VALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--------RDIQAPDGLAVDW--------IHSNIYWTD 489 (791)
T ss_dssp EEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEEC--------SSCSCCCEEEEET--------TTTEEEEEE
T ss_pred EEEeeccc-CCeeEEeeccceeEEEEeccCCCCCcceeEEEe--------cCCCCcceeeeee--------cCCcEEEEe
Confidence 34444332 2334555556678888887532 1111111 1113344566432 22 344555
Q ss_pred ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec--CCCeEEEEECCCceeeeeecCCCCCC
Q 020454 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNS 207 (326)
Q Consensus 130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~ 207 (326)
...+.|.+.+++... .++.-.........|+++|.+.+|+... ..+.|...++........+...
T Consensus 490 ~~~~~I~v~~ldG~~---------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~---- 556 (791)
T 3m0c_C 490 SVLGTVSVADTKGVK---------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN---- 556 (791)
T ss_dssp TTTTEEEEEETTSSS---------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS----
T ss_pred cCCCeEEEEeCCCCe---------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC----
Confidence 566777777765322 1111112234678999999765554443 2367888888754433222211
Q ss_pred CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ec--CCceEEEEecCCCCeEE-EEcCCCcEE
Q 020454 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FR--ETPIKAVAEEPDSFNIY-IGNGSGDLA 283 (326)
Q Consensus 208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~--~~~i~~v~~s~~~~~l~-~g~~dg~v~ 283 (326)
+ .+..++++.+. .++++++-...+.|..+|+... . ...+. .. -.....|++. +.+|+ +-...+.|.
T Consensus 557 --l---~~P~GLavD~~-~~~LYwaD~~~~~I~~~d~dG~-~-~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 557 --I---QWPNGITLDLL-SGRLYWVDSKLHSISSIDVNGG-N-RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 626 (791)
T ss_dssp --C---SCEEEEEEETT-TTEEEEEETTTTEEEEEETTSC-S-CEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred --C---CCceEEEEecC-CCeEEEEeCCCCcEEEEecCCC-c-eEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEE
Confidence 1 45778999875 4545566567789999998754 2 23332 21 1234466663 44555 545667899
Q ss_pred EEECCCCeEEEEEc
Q 020454 284 SVDIRTGKLLGCFI 297 (326)
Q Consensus 284 iwd~~~~~~~~~~~ 297 (326)
..|..+|+.+..+.
T Consensus 627 ~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 627 SANRLTGSDVNLLA 640 (791)
T ss_dssp EEETTTCCCCEEEE
T ss_pred EEeCCCCcceEEee
Confidence 99988876655554
No 288
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.07 E-value=0.097 Score=43.26 Aligned_cols=170 Identities=12% Similarity=0.088 Sum_probs=96.3
Q ss_pred cCCcEEEEEccccccccccccceEEEEEccC------CCceEEEEEcC--CCC--EEEEecC--CCeEEEEECCCc--ee
Q 020454 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCA------SGTIAFSKVDI--SEK--FSLFGGK--GVEVNVWDLDKC--EK 196 (326)
Q Consensus 131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~--~~~--~l~sg~~--d~~i~iwd~~~~--~~ 196 (326)
.+|.|.++|++.... ..+.+.... .-....+.+.+ ++. ++++-.. +.+|.+|++... ..
T Consensus 81 ~~G~I~~~d~~~~~~-------~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~ 153 (355)
T 3sre_A 81 KSGKILLMDLNEKEP-------AVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSL 153 (355)
T ss_dssp -CCEEEEEETTSSSC-------CEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEE
T ss_pred CCCeEEEEecCCCCC-------ceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEE
Confidence 688899998764221 111222211 12456666654 342 4444333 567888887653 22
Q ss_pred --eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-----------------CCCeEEEEeCCCCCCceeEEeec
Q 020454 197 --IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-----------------NDHQVRLYDTSAQRRPVMSFDFR 257 (326)
Q Consensus 197 --~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-----------------~dg~v~iwd~~~~~~~~~~~~~~ 257 (326)
+....... -...+.+.+.+ ++..+++.. ..|.|.-+|.. + +..+...
T Consensus 154 ~~~~~~~g~~--------~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~-~~~~~~~ 219 (355)
T 3sre_A 154 LHLKTIRHKL--------LPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---D-VRVVAEG 219 (355)
T ss_dssp EEEEEECCTT--------CSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT---C-CEEEEEE
T ss_pred EEEeccccCC--------CCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC---e-EEEeecC
Confidence 22222211 13467888887 454555543 12556666653 2 2233223
Q ss_pred CCceEEEEecCCCCeEEEEc-CCCcEEEEECCC-CeE--EEEEcceecceEEEEEECC-CCCEEEEeccCc
Q 020454 258 ETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRT-GKL--LGCFIGKCSGSIRSIARHP-TLPIIASCGFLE 323 (326)
Q Consensus 258 ~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~-~~~--~~~~~~~~~~~v~~l~~~p-~~~~l~s~s~D~ 323 (326)
-..-+.++|+||+++|+.+. ..+.|..|++.. ++. ...+. ..+....+++.+ +|.+.+++..++
T Consensus 220 l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lwva~~~~g 288 (355)
T 3sre_A 220 FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLWVGCHPNG 288 (355)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEEEEEESCH
T ss_pred CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEEEEecCCc
Confidence 34568999999998887554 578899999863 433 22342 256678899999 588877665543
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.05 E-value=0.096 Score=42.95 Aligned_cols=217 Identities=12% Similarity=0.137 Sum_probs=118.4
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEE-EEEeeeCCC-CCeEEE-Eec--CCcEEEEec--cccce
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVL-AASIDDSQN-DPLLAV-ARK--NGLTDILNP--LNGDL 87 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~l~~-g~~--dg~i~i~~~--~~~~~ 87 (326)
.+++..+..+-+.|+|+.+. +.+.... .....+- .-.+.-... -.++++ -.. +++|.+|++ .++++
T Consensus 41 s~ii~t~k~~gL~Vydl~G~------~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l 113 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLDGK------MLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (355)
T ss_dssp CEEEEEETTTEEEEEETTSC------EEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred cEEEEEcCCCCEEEEcCCCc------EEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence 44677777889999999543 4444443 2222221 111111110 012233 333 578999966 34442
Q ss_pred eeeecccCCCCCCCCCCCeeeeecccccccccCCCC-ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceE
Q 020454 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS-RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~-~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 166 (326)
..+.....+ +......+.+++.+.... .. -++++...+|.+..|++...... ......++.+.+ ...+.
T Consensus 114 -~~i~~~~~p-v~t~~~~pyGlcly~~~~-----~g~~yafV~~k~G~~~q~~l~~~~~g-~~~~~lVR~f~l--gsq~E 183 (355)
T 3amr_A 114 -QSMTDPDHP-IATAINEVYGFTLYHSQK-----TGKYYAMVTGKEGEFEQYELKADKNG-YISGKKVRAFKM--NSQTE 183 (355)
T ss_dssp -EECSCTTSC-EECCCSSCCCEEEEECTT-----TCCEEEEEECSSSEEEEEEEEECTTS-CEEEEEEEEEEC--SSCEE
T ss_pred -eeccccccC-cCCCCCCeeEEEEEecCC-----CCcEEEEEECCCCeEEEEEEEeCCCC-cccceEEEEecC--CCCcc
Confidence 333211000 001113455566544211 12 25888888999999988642210 012345666666 45788
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECC-----CceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc-EEE-EEeCCCeE
Q 020454 167 FSKVDISEKFSLFGGKGVEVNVWDLD-----KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFV-AGTNDHQV 239 (326)
Q Consensus 167 ~~~~~~~~~~l~sg~~d~~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-~l~-~~~~dg~v 239 (326)
.+..++....|+.+-++..|..++.+ +.+.+....... ....+..++.-+..+++ +|+ ++-.+.+.
T Consensus 184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~-------l~aDvEGLai~~~~~g~gyLivSsQG~~s~ 256 (355)
T 3amr_A 184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH-------LTRDIEGLTIYYAADGKGYLMASSQGNSSY 256 (355)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSS-------BCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCc-------cccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence 99999988899999998777777755 233443322110 01246788876543333 444 44467899
Q ss_pred EEEeCCCCCCceeEEe
Q 020454 240 RLYDTSAQRRPVMSFD 255 (326)
Q Consensus 240 ~iwd~~~~~~~~~~~~ 255 (326)
.+||.....+.+..|.
T Consensus 257 ~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 257 AIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEESSTTCCEEEEEE
T ss_pred EEEECCCCCcEEEEEE
Confidence 9999973335666775
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.05 E-value=0.11 Score=43.78 Aligned_cols=231 Identities=10% Similarity=0.017 Sum_probs=120.7
Q ss_pred CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc----eeeeecccCCC
Q 020454 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD----LRVAISNAGDS 97 (326)
Q Consensus 22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~----~~~~~~~~~~~ 97 (326)
....|+..++.+. ....+ .. ......++.++.. .+.+.++-..++.|+.+++.... ....+.
T Consensus 90 ~~~~I~~i~l~~~--~~~~~---~~---~~~~~~~l~~d~~-~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~----- 155 (400)
T 3p5b_L 90 NRHEVRKMTLDRS--EYTSL---IP---NLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----- 155 (400)
T ss_dssp ETTEEEEECTTSC--SCEEE---EC---SCSCEEEEEEETT-TTEEEEEETTTTEEEEEEC------CCCEEEEC-----
T ss_pred ccceeEEEccCCc--ceeEe---cc---ccCcceEEeeeec-cCceEEEecCCCeEEEEEcccCCCCCcceEEEe-----
Confidence 3456677776654 11111 11 1223344555432 23344455567888888875421 111111
Q ss_pred CCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEE
Q 020454 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS 177 (326)
Q Consensus 98 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 177 (326)
.......++++... .+..+++-...+.|.+.+++... ...+.. ........++++|.+.+|
T Consensus 156 ---~~~~~p~glavD~~-------~~~lY~~d~~~~~I~~~~~~g~~--------~~~l~~-~~~~~P~~iavdp~~g~l 216 (400)
T 3p5b_L 156 ---RDIQAPDGLAVDWI-------HSNIYWTDSVLGTVSVADTKGVK--------RKTLFR-ENGSKPRAIVVDPVHGFM 216 (400)
T ss_dssp ---SSCSCEEEEEEETT-------TTEEEEEETTTTEEEEECTTTCS--------EEEEEE-CSSCCEEEEEEETTTTEE
T ss_pred ---CCCCCcccEEEEec-------CCceEEEECCCCeEEEEeCCCCc--------eEEEEe-CCCCCcceEEEecccCeE
Confidence 11234555664320 12334444556677766654321 111122 223457899999976555
Q ss_pred EEec--CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe
Q 020454 178 LFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD 255 (326)
Q Consensus 178 ~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 255 (326)
+... ..+.|...++........... .-.+..++++.|. +++++++-+..+.|..+|+... . ...+.
T Consensus 217 y~td~~~~~~I~~~~~dG~~~~~~~~~---------~l~~P~glavd~~-~~~lY~aD~~~~~I~~~d~dG~-~-~~~~~ 284 (400)
T 3p5b_L 217 YWTDWGTPAKIKKGGLNGVDIYSLVTE---------NIQWPNGITLDLL-SGRLYWVDSKLHSISSIDVNGG-N-RKTIL 284 (400)
T ss_dssp EEEECSSSCCEEEEETTSCSCEEEECS---------SCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSC-C-CEEEE
T ss_pred EEEeCCCCCEEEEEeCCCCccEEEEEC---------CCCceEEEEEEeC-CCEEEEEECCCCEEEEEeCCCC-c-cEEEE
Confidence 4443 246788888865433222211 0145778999975 4445566667889999998754 2 22332
Q ss_pred e---cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454 256 F---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (326)
Q Consensus 256 ~---~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 298 (326)
. .-.....+++. .+..+++-...+.|..+|..+|+.+..+..
T Consensus 285 ~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 285 EDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp ECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred eCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEec
Confidence 2 12344566763 333444666678899999888876665553
No 291
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.02 E-value=0.13 Score=43.93 Aligned_cols=146 Identities=8% Similarity=-0.081 Sum_probs=85.9
Q ss_pred CceEEEEEcC-CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc-EEEEEeCCCeEE
Q 020454 163 GTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVR 240 (326)
Q Consensus 163 ~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-~l~~~~~dg~v~ 240 (326)
.....++++| ++.+.++-..++.|+.+|..++.....+..... ..+-..++|+| +++ ++++-...+.|+
T Consensus 228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-------~~~~~~ia~dp--dG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-------KGSNFHIVWHP--TGDWAYIIYNGKHCIY 298 (433)
T ss_dssp SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-------CSSCEEEEECT--TSSEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-------CCCcccEEEeC--CCCEEEEEeCCCCEEE
Confidence 3456788999 666666666778899999886655222211111 12234689988 454 556666788999
Q ss_pred EEeCCCCCCc---eeEEeec---------------CCceEEEEe---------cCCCCeEEEEcCCCcEEEEECCCCeEE
Q 020454 241 LYDTSAQRRP---VMSFDFR---------------ETPIKAVAE---------EPDSFNIYIGNGSGDLASVDIRTGKLL 293 (326)
Q Consensus 241 iwd~~~~~~~---~~~~~~~---------------~~~i~~v~~---------s~~~~~l~~g~~dg~v~iwd~~~~~~~ 293 (326)
.++....... ...+... -.....+++ .++|++.++-...+.|+.++. +|...
T Consensus 299 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~ 377 (433)
T 4hw6_A 299 RVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT 377 (433)
T ss_dssp EEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred EEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE
Confidence 9886521111 1122211 113566888 677776667667788999985 56544
Q ss_pred EEEccee-----------------cceEEEEEEC-CCCCEEEEe
Q 020454 294 GCFIGKC-----------------SGSIRSIARH-PTLPIIASC 319 (326)
Q Consensus 294 ~~~~~~~-----------------~~~v~~l~~~-p~~~~l~s~ 319 (326)
. +.+.- -..-..|+++ +++.++++=
T Consensus 378 t-~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD 420 (433)
T 4hw6_A 378 T-YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGD 420 (433)
T ss_dssp E-EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred E-EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEe
Confidence 3 32210 1136689999 566555543
No 292
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.00 E-value=0.1 Score=42.46 Aligned_cols=205 Identities=8% Similarity=-0.016 Sum_probs=109.1
Q ss_pred eEEEEecCCcEEEEeccccc--eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCcEEEEEcccc
Q 020454 67 LLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVT 143 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~~~ 143 (326)
+|+.+. ...|+.+++.... ....+.. .....++.+.. .++.| ++-...+.|..++++..
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~---------~~~~~~ld~d~--------~~~~lyw~D~~~~~I~r~~~~g~ 67 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGG---------LEDAAAVDFVF--------SHGLIYWSDVSEEAIKRTEFNKT 67 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEE---------EEEEEEEEEEG--------GGTEEEEEETTTTEEEEEETTSS
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecC---------CCccEEEEEEe--------CCCEEEEEECCCCcEEEEEccCC
Confidence 455554 4778899986543 1111111 12344566533 22333 34445566766665432
Q ss_pred ccccccccceEEEEEccCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454 144 KVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (326)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (326)
.. ...+ .. ..-.....+++++. ++++++-...+.|.++++............ + ....++++.
T Consensus 68 ~~-----~~~~--~~-~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~------~---~~P~giavd 130 (318)
T 3sov_A 68 ES-----VQNV--VV-SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE------L---DQPRAIALD 130 (318)
T ss_dssp SC-----CCEE--EE-ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS------C---SSEEEEEEE
T ss_pred Cc-----eEEE--Ec-CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCC------C---CCccEEEEe
Confidence 10 0111 11 11234567888864 455566566788999998754322221110 1 335688898
Q ss_pred ecCCCcEEEEEe-CCCeEEEEeCCCCCCceeEE-eecCCceEEEEecCCCCeEEEE-cCCCcEEEEECCCCeEEEEEcce
Q 020454 223 SIDDHRKFVAGT-NDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGK 299 (326)
Q Consensus 223 p~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~-~~~~~~i~~v~~s~~~~~l~~g-~~dg~v~iwd~~~~~~~~~~~~~ 299 (326)
|. .+.++.+-. ..+.|...++... . ...+ ...-..-..++++|++..|+.+ +..+.|..+|+..........+.
T Consensus 131 p~-~g~ly~td~~~~~~I~r~~~dG~-~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~ 207 (318)
T 3sov_A 131 PS-SGFMYWTDWGEVPKIERAGMDGS-S-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 207 (318)
T ss_dssp GG-GTEEEEEECSSSCEEEEEETTSC-S-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC
T ss_pred CC-CCEEEEEecCCCCEEEEEEcCCC-C-eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC
Confidence 85 354444442 3578888888743 2 2222 2223456899999977777655 45678999998743222222222
Q ss_pred ecceEEEEEEC
Q 020454 300 CSGSIRSIARH 310 (326)
Q Consensus 300 ~~~~v~~l~~~ 310 (326)
......|++.
T Consensus 208 -~~~P~glav~ 217 (318)
T 3sov_A 208 -LPHPFALTLF 217 (318)
T ss_dssp -CSCEEEEEEE
T ss_pred -CCCceEEEEe
Confidence 3334455554
No 293
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.007 Score=49.63 Aligned_cols=199 Identities=10% Similarity=0.048 Sum_probs=106.3
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE--ecCCcEEEEEccccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC--TTKGKASMRSIEVTK 144 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~--~~~g~v~i~~~~~~~ 144 (326)
++++++.||.|.-+|..+|+.+-.+..- ...++..... + . ...++.++.+ +.||.++.++...
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~-------~~~p~~~~~~-~----~-~~~~~~~~vv~p~~dG~l~a~~~~~-- 76 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPE-------NFQPLIEIQE-P----S-RLETYETLIIEPFGDGNIYYFNAHQ-- 76 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGG-------GSCCSEECCC-S----C-TTTSSEEEEECCSTTTEEEEEETTT--
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCC-------ccCCcEEecC-C----c-cccCCcEEEEEECCCCEEEEEECCC--
Confidence 5899999999999999999988887651 0012222110 0 0 0012344444 5899988887542
Q ss_pred cccccccceEEEEEccCCCceE--EEEEc-----------CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC-C-
Q 020454 145 VSAESSCSTVKSWNVCASGTIA--FSKVD-----------ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL-G- 209 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~--~~~~~-----------~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~- 209 (326)
+ ...|.......+. -+... ..+..+++|+.++.+...|+++|+.++.......... .
T Consensus 77 -------G-~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 148 (339)
T 2be1_A 77 -------G-LQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGS 148 (339)
T ss_dssp -------E-EEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----
T ss_pred -------C-cEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccc
Confidence 1 2234332211110 01110 1456788999999999999999999998765321100 0
Q ss_pred -cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec---CCceE-----EEEecCCCCeEEEEcCCC
Q 020454 210 -IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR---ETPIK-----AVAEEPDSFNIYIGNGSG 280 (326)
Q Consensus 210 -~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~~i~-----~v~~s~~~~~l~~g~~dg 280 (326)
-.....+. .+.....+..++.+..+..+.+.+ +++ + +..++.. ...+. .-..+.++.+ +.++.||
T Consensus 149 ~~e~~~~~~--d~~~d~~~~~v~ig~~~y~v~~~~-~sG-~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg 222 (339)
T 2be1_A 149 QSVDCSPEE--KIKLQECENMIVIGKTIFELGIHS-YDG-A-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDK 222 (339)
T ss_dssp ------------------CCEEEEEEEEEECEECC-TTS-C-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTT
T ss_pred ccccccccc--ccccccCCCeEEEecceEEEEEEC-CCC-C-eEEEecccccccccccccccccccccCCcE-EEECCCC
Confidence 00000000 010001123677777777777777 444 2 2222110 00000 0011234666 4578899
Q ss_pred cEEEEECCCCeEEE
Q 020454 281 DLASVDIRTGKLLG 294 (326)
Q Consensus 281 ~v~iwd~~~~~~~~ 294 (326)
.|.-+|..+|+.+.
T Consensus 223 ~v~A~d~~~G~~~W 236 (339)
T 2be1_A 223 SLLASDLDFRIARW 236 (339)
T ss_dssp EEEEECSTTCCEEE
T ss_pred EEEEEECCCCcEEE
Confidence 99999999888765
No 294
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.98 E-value=0.063 Score=46.46 Aligned_cols=147 Identities=12% Similarity=0.001 Sum_probs=85.0
Q ss_pred ceEEEEEcCC-C-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE-------eecCCCcEEEEEe
Q 020454 164 TIAFSKVDIS-E-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF-------LSIDDHRKFVAGT 234 (326)
Q Consensus 164 ~v~~~~~~~~-~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~p~~~~~~l~~~~ 234 (326)
....|+++|. + +++++-...+.|++.|+..+............ ......++| .+ +++.|++..
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~------~~~p~~ia~~~~~~~~d~--~G~~lyvad 211 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP------TNRIRSIAFNKKIEGYAD--EAEYMIVAI 211 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS------CSBEEEEEECCCBTTTBC--TTCEEEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccc------cCCCcEEEEeecccccCC--CCCEEEEEe
Confidence 4678999984 4 45555444567999999887665544321111 134678888 77 454455554
Q ss_pred CCC-------eEEEEeCCCCCCce-----eEEeecCCceEEEEecCCCCe-EEEEcCCCcEEEEECC-------CCeE--
Q 020454 235 NDH-------QVRLYDTSAQRRPV-----MSFDFRETPIKAVAEEPDSFN-IYIGNGSGDLASVDIR-------TGKL-- 292 (326)
Q Consensus 235 ~dg-------~v~iwd~~~~~~~~-----~~~~~~~~~i~~v~~s~~~~~-l~~g~~dg~v~iwd~~-------~~~~-- 292 (326)
..+ .|.+++........ ..+... .....++++|++.. +++-..++.|..+|+. ++..
T Consensus 212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 332 36677644311111 223222 23457789996545 4566677889999997 5543
Q ss_pred ---------EEE-EcceecceEEEEEECCCCCEEEEe
Q 020454 293 ---------LGC-FIGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 293 ---------~~~-~~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
... +.......-..|+|+|++++|..+
T Consensus 291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYva 327 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFG 327 (496)
T ss_dssp CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred ccccccccccceeEecCCCCCceEEEEcCCCCEEEEE
Confidence 112 221113346789999999854443
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.90 E-value=0.26 Score=45.54 Aligned_cols=189 Identities=10% Similarity=-0.041 Sum_probs=106.0
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCcEEEEEcccccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKV 145 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~~~~~ 145 (326)
+|+.+ ....|+..++...+....+.. ...+.++.+.. ..+.| ++-...+.|+.++++....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~---------~~~~~gl~~d~--------~~~~lY~sD~~~~~I~~~~l~g~~~ 458 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEV--------ASNRIYWSDLSQRMICSTQLDRAHG 458 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEECS---------CSSEEEEEEET--------TTTEEEEEETTTTEEEEEEC-----
T ss_pred ccccc-cccceeEeeccCCcceeeecC---------CCceEEEeecc--------cCCeeEEeeccceeEEEEeccCCCC
Confidence 44444 346688888865554333221 14556677543 23344 4444556777777653210
Q ss_pred ccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454 146 SAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (326)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 224 (326)
. .....+.. ........|++++.+ +++++-...+.|.+.++........+... + ....+|++.|.
T Consensus 459 ~----~~~~~vi~-~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~------l---~~P~gIaVDp~ 524 (791)
T 3m0c_C 459 V----SSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN------G---SKPRAIVVDPV 524 (791)
T ss_dssp -------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT------T---CCEEEEEEETT
T ss_pred C----cceeEEEe-cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCC------C---CCcceEEEecC
Confidence 0 00111221 123456678888766 55556667789999998754432222211 1 23668899885
Q ss_pred CCCcEEEEEeCC-CeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCC
Q 020454 225 DDHRKFVAGTND-HQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTG 290 (326)
Q Consensus 225 ~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~ 290 (326)
.+.++++-... +.|...++... . ...+. ..-.....|++++.+..|+.+. ..+.|..+++...
T Consensus 525 -~g~LYwtD~g~~~~I~~~~~dG~-~-~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 525 -HGFMYWTDWGTPAKIKKGGLNGV-D-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp -TTEEEEEECSSSCEEEEEETTSC-C-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred -CCCEEEecCCCCCeEEEEecCCC-c-eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 35455554333 78888888743 2 33332 2335678999998777777554 4567999998654
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.87 E-value=0.19 Score=43.51 Aligned_cols=209 Identities=10% Similarity=0.045 Sum_probs=106.9
Q ss_pred EEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeec-------ccccccccCCCCceEEE
Q 020454 56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHL-------FKRQREESSSRSRTLLT 128 (326)
Q Consensus 56 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-------~~~~~~~~~~~~~~l~~ 128 (326)
.+++++...+.++++-...+.|+++|+.++.+......- ...-....++++ .. +...|++
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~-----~~~~~~p~~ia~~~~~~~~d~--------~G~~lyv 209 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN-----TIPTNRIRSIAFNKKIEGYAD--------EAEYMIV 209 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT-----TSSCSBEEEEEECCCBTTTBC--------TTCEEEE
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC-----ccccCCCcEEEEeecccccCC--------CCCEEEE
Confidence 344443222334444444578999999777765443320 011234566665 33 3445666
Q ss_pred EecCC-c------EEEEEcccccccccccc-ceEEEEEccCCCceEEEEEcCC-CCEEEEecCCCeEEEEECC-------
Q 020454 129 CTTKG-K------ASMRSIEVTKVSAESSC-STVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLD------- 192 (326)
Q Consensus 129 ~~~~g-~------v~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~------- 192 (326)
....+ . +.+.+...........+ ..+..+ .....++++|+ +.++++-..++.|..+|+.
T Consensus 210 ad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~ 284 (496)
T 3kya_A 210 AIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIK 284 (496)
T ss_dssp EECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred EeCCCCCcccCceEEEEecCCCCceeecccceeeccC-----CCceEEEEcCCCCeEEEEECCCCEEEEEeccccccccc
Confidence 65544 2 44444222111111011 122222 24457788995 5666666778889999987
Q ss_pred Ccee-----------eeeecCCCCCCCCcCCCCceeeeEEeecCCCc-EEEEEeCCCeEEEEeCCCCCCce---eEEeec
Q 020454 193 KCEK-----------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPV---MSFDFR 257 (326)
Q Consensus 193 ~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-~l~~~~~dg~v~iwd~~~~~~~~---~~~~~~ 257 (326)
++.. ...+.. +....+.+.++|+| +++ ++++-+..+.|+.++.......+ ..+.+.
T Consensus 285 tg~~~tp~~~~~~g~~~~l~~-------~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~ 355 (496)
T 3kya_A 285 NGGSWDPIVKNNPNTFKQLFT-------IADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG 355 (496)
T ss_dssp TTCCCCCBGGGCTTTEEEEEE-------CSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred CceeecccccccccccceeEe-------cCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence 3432 001100 11123567899998 455 45666778899997654221111 122221
Q ss_pred ---C------------CceE-EEEec-------CCCCeEEEEcCCCcEEEEECCCCeE
Q 020454 258 ---E------------TPIK-AVAEE-------PDSFNIYIGNGSGDLASVDIRTGKL 292 (326)
Q Consensus 258 ---~------------~~i~-~v~~s-------~~~~~l~~g~~dg~v~iwd~~~~~~ 292 (326)
. .... .++.. +++.++++=..++.|+.++ .+|..
T Consensus 356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v 412 (496)
T 3kya_A 356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV 412 (496)
T ss_dssp TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE
T ss_pred CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE
Confidence 0 1123 44444 4566666666778899998 45643
No 297
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.84 E-value=0.14 Score=43.69 Aligned_cols=143 Identities=16% Similarity=0.042 Sum_probs=82.0
Q ss_pred ceEEEEEcCC--CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC---C-
Q 020454 164 TIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---H- 237 (326)
Q Consensus 164 ~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d---g- 237 (326)
....++++|+ +..|+.+...+.|+.+|..+++....... ......+++.+ +++++++.... .
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~----------~~~P~giavd~--dG~lyVad~~~~~~~~ 207 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN----------IGQCADVNFTL--NGDMVVVDDQSSDTNT 207 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC----------CSCEEEEEECT--TCCEEEEECCSCTTSE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC----------CCCccEEEECC--CCCEEEEcCCCCcccc
Confidence 4568899984 34444444448899999987765544321 13467888887 45555554321 1
Q ss_pred eEEEEeCCCCCCceeEEeecCCceEEEEecC-CCCeEEEEcCCCcEEEEECCCCeEEEEE-cceecceEEEEEECCCCCE
Q 020454 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPI 315 (326)
Q Consensus 238 ~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~~p~~~~ 315 (326)
.+..++..........+. .-.....++++| +|.+.++-..++.|+.+|..+++....+ .......-..|+|+|+++.
T Consensus 208 gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 208 GIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp EEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred eEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 233344332211111222 224456788999 5655556556788999999877763332 2110222346999999985
Q ss_pred EEEe
Q 020454 316 IASC 319 (326)
Q Consensus 316 l~s~ 319 (326)
|..+
T Consensus 287 LYva 290 (433)
T 4hw6_A 287 AYII 290 (433)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.83 E-value=0.019 Score=52.42 Aligned_cols=182 Identities=9% Similarity=-0.046 Sum_probs=94.4
Q ss_pred CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccccccccccc
Q 020454 74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCS 152 (326)
Q Consensus 74 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~~~~~ 152 (326)
.+.|+..++...+....+... ..+.++++.. ..+.|+.. ...+.|+.++++.... +..
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~---------~~p~gla~d~--------~~~~Ly~sD~~~~~I~~~~~~g~~~--~~~-- 443 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNL---------RNVVALDTEV--------ASNRIYWSDLSQRMICSTQLDRAHG--VSS-- 443 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCC---------TTCCCCEEET--------TTTEEEECCTTTTSBEEEESCCCCC---CC--
T ss_pred ccceEEEeCCCCcceeeeccC---------cceEEEcccc--------ccCeEEEEecCCCeEEEEecCCCCC--Ccc--
Confidence 367888888665553333221 2344566533 23444444 3457788777653100 000
Q ss_pred eEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE
Q 020454 153 TVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (326)
Q Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~ 231 (326)
...++. ........|++++.+ +++++-...+.|.++++........+... + .....+++.|. .+.+++
T Consensus 444 ~~~~i~-~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~------~---~~P~giavDp~-~g~ly~ 512 (699)
T 1n7d_A 444 YDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQ------G---SKPRAIVVDPV-HGFMYW 512 (699)
T ss_dssp CCCBCC-SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCS------S---CCCCCEECCSS-SSCCEE
T ss_pred eEEEEe-CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCC------C---CCcceEEEccC-CCcEEE
Confidence 000110 011234567787544 55555456678999998755433222111 1 12346777774 343444
Q ss_pred EEeCC-CeEEEEeCCCCCCceeEE-eecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCC
Q 020454 232 AGTND-HQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRT 289 (326)
Q Consensus 232 ~~~~d-g~v~iwd~~~~~~~~~~~-~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~ 289 (326)
+-... +.|..+++..... ..+ ...-.....|+|+|++..|+ +-...+.|..+++..
T Consensus 513 td~~~~~~I~~~~~dG~~~--~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 513 TDWGTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CCCSSSCCEEBCCSSSCCC--CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred cccCCCCeEEEEeCCCCCe--eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 44333 6788887764322 222 12223457899999866666 444567899999864
No 299
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.80 E-value=0.19 Score=42.40 Aligned_cols=191 Identities=9% Similarity=-0.063 Sum_probs=109.4
Q ss_pred CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccc
Q 020454 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTK 144 (326)
Q Consensus 66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~ 144 (326)
++|+.+ ....|+..++........+.. ...+.++++.. .++.|+.. ...+.|+.++++...
T Consensus 84 ~~ll~~-~~~~I~~i~l~~~~~~~~~~~---------~~~~~~l~~d~--------~~~~lywsD~~~~~I~~~~~~g~~ 145 (400)
T 3p5b_L 84 AYLFFT-NRHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEV--------ASNRIYWSDLSQRMICSTQLDRAH 145 (400)
T ss_dssp CEEEEE-ETTEEEEECTTSCSCEEEECS---------CSCEEEEEEET--------TTTEEEEEETTTTEEEEEEC----
T ss_pred ceeEEe-ccceeEEEccCCcceeEeccc---------cCcceEEeeee--------ccCceEEEecCCCeEEEEEcccCC
Confidence 344444 447899999876654333322 24566777643 23444444 456777777754311
Q ss_pred cccccccceEEEEEccCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454 145 VSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 223 (326)
. ......+.. ........+++++. +++.++-...+.|.+.++........+... + ....++++.|
T Consensus 146 ~----~~~~~~~~~-~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~------~---~~P~~iavdp 211 (400)
T 3p5b_L 146 G----VSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN------G---SKPRAIVVDP 211 (400)
T ss_dssp ------CCCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECS------S---CCEEEEEEET
T ss_pred C----CCcceEEEe-CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCC------C---CCcceEEEec
Confidence 0 000111211 22346778899874 556666667788999998765433322211 1 2356889988
Q ss_pred cCCCcEEEEEeC-CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCC
Q 020454 224 IDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTG 290 (326)
Q Consensus 224 ~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~ 290 (326)
. .+.++++-.. .+.|...++... .........-.....|++++++..|+.+. ..+.|..+|+...
T Consensus 212 ~-~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 212 V-HGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp T-TTEEEEEECSSSCCEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred c-cCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 5 4545555433 478888888744 22222222335678999998877777554 4678999998754
No 300
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.17 Score=41.51 Aligned_cols=116 Identities=8% Similarity=0.006 Sum_probs=59.3
Q ss_pred eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCC-CceEEEEEeeeCCCCCeEEEE--ecCCcEEEEeccccceeeee
Q 020454 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS-SNCVLAASIDDSQNDPLLAVA--RKNGLTDILNPLNGDLRVAI 91 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g--~~dg~i~i~~~~~~~~~~~~ 91 (326)
-.++.++.||.|.-.|..++ ++ .|.-+.. ....+...-.....+..++++ ..||.|..++..+|..+..+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG-----~~--~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNG-----HI--IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EEEEEEETTSCEEEEETTTT-----EE--EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCC-----cE--EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 46889999999999998877 44 3332211 011111110001112234444 68999999998877554333
Q ss_pred cccCCCCCCCCCCCeeeee--cc-cccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454 92 SNAGDSGAQPEDDGIVGLH--LF-KRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (326)
Q Consensus 92 ~~~~~~~~~~~~~~i~~l~--~~-~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~ 144 (326)
..... ....++..-. .. . ....+.++.+++++.+|.+...|+....
T Consensus 84 ~~~~l----v~~SP~~~~~~pvv~~---~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 84 SIRQL----VSTSPLHLKTNIVVND---SGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp EHHHH----HTTCSEEEECC-------------CCEEEEECEEEEEEEEEETTTCC
T ss_pred ccccc----eeccccccCCCceeec---ccccccCCEEEEEecCCEEEEEECCCCc
Confidence 22000 0011222100 00 0 0000135688999999998888866543
No 301
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.66 E-value=0.38 Score=47.04 Aligned_cols=197 Identities=13% Similarity=0.091 Sum_probs=107.5
Q ss_pred CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~ 143 (326)
..+.+|.- ...++.|||+++...+..+... .+|.-..|.+ ...+.--.+..|+-|++...
T Consensus 76 ~~~iiALr-ag~~lQiFnl~~k~klks~~~~---------e~VvfWkWis----------~~~l~lVT~~aVyHW~~~~~ 135 (1630)
T 1xi4_A 76 ASKVIALK-AGKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWIS----------LNTVALVTDNAVYHWSMEGE 135 (1630)
T ss_pred CcceEEEe-cCCeEEEeehHHhhhhcccccC---------CCceEEEecC----------CCeeEEEcCCeEEEeccCCC
Confidence 33444444 4799999999877766655531 3455455533 33444445667899998642
Q ss_pred ccccccccceEEEEEcc---CCCceEEEEEcCCCCEEEEec-------CCCeEEEEECCCceeeeeecCCCCCCCCcCCC
Q 020454 144 KVSAESSCSTVKSWNVC---ASGTIAFSKVDISEKFSLFGG-------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (326)
Q Consensus 144 ~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 213 (326)
. .++++++.. .+..|..-..+++.++++..| -.|.+.+|..+.+.. ..+.+|......+..+
T Consensus 136 s-------~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~ 207 (1630)
T 1xi4_A 136 S-------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKME 207 (1630)
T ss_pred C-------ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccC
Confidence 2 233333322 134677778888888876533 347788888765321 1122222111111111
Q ss_pred CceeeeEEeecCCCcEEEEEe---CCCeEEEEeCCCC---CCcee----EEee----cCCceEEEEecCCCCeEEEEcCC
Q 020454 214 TWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQ---RRPVM----SFDF----RETPIKAVAEEPDSFNIYIGNGS 279 (326)
Q Consensus 214 ~~v~~~~~~p~~~~~~l~~~~---~dg~v~iwd~~~~---~~~~~----~~~~----~~~~i~~v~~s~~~~~l~~g~~d 279 (326)
.. +. ...+++.+. ..++++|-++... ..+.. .+.. ...--.++..++.-..++.-+.-
T Consensus 208 ~~-------~~-~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~ 279 (1630)
T 1xi4_A 208 GN-------AE-ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 279 (1630)
T ss_pred CC-------CC-CceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecC
Confidence 10 00 011222111 1268888887432 11111 0111 11223456778877788888999
Q ss_pred CcEEEEECCCCeEEEEE
Q 020454 280 GDLASVDIRTGKLLGCF 296 (326)
Q Consensus 280 g~v~iwd~~~~~~~~~~ 296 (326)
|.+++||+.++.++..-
T Consensus 280 G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 280 GYIHLYDLETGTCIYMN 296 (1630)
T ss_pred ceEEEEecccchhhhhc
Confidence 99999999999876543
No 302
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.62 E-value=0.28 Score=41.86 Aligned_cols=155 Identities=10% Similarity=0.060 Sum_probs=79.2
Q ss_pred CceEEE-EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCE-EEEecCCCeEEEEECCC--cee--
Q 020454 123 SRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDK--CEK-- 196 (326)
Q Consensus 123 ~~~l~~-~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~d~~i~iwd~~~--~~~-- 196 (326)
++.|+. -..++.|..++.+... ...+...........++++|++++ +++-...+.|..++... ++.
T Consensus 237 ~g~lyv~d~~~~~V~~~~~~~~~--------~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~ 308 (430)
T 3tc9_A 237 NGELYFNSWNAGQVFRYDFTTQE--------TTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTT 308 (430)
T ss_dssp TCCEEEEETTTTEEEEEETTTTE--------EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECC
T ss_pred CCEEEEEECCCCEEEEEECCCCc--------EEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccc
Confidence 344444 4456777777755321 112333333345778999999984 45555678899987653 221
Q ss_pred eeeecCC--CCCCCC-c---CCCCcee-eeEEee------cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec------
Q 020454 197 IWTAKPP--PKNSLG-I---FTPTWFT-SAAFLS------IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ 257 (326)
Q Consensus 197 ~~~~~~~--~~~~~~-~---~~~~~v~-~~~~~p------~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------ 257 (326)
...+... ...... . ..-.... .+...+ ..++.++++-...+.|+.++.. + . +..+.+.
T Consensus 309 ~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G-~-v~~~~g~g~~~~~ 385 (430)
T 3tc9_A 309 PYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-G-R-VTTFAGRGSNGTS 385 (430)
T ss_dssp CEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-S-E-EEEEEECCTTSSS
T ss_pred eEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-C-c-EEEEEeCCCCCCC
Confidence 1111110 000000 0 0001122 333322 1235566666677888888843 3 2 3333221
Q ss_pred ---C---------CceEEEEecCC-CCeEEEEcCCCcEEEEECC
Q 020454 258 ---E---------TPIKAVAEEPD-SFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 258 ---~---------~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~ 288 (326)
+ .....++++|+ +.++++-..++.|+.++++
T Consensus 386 G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 386 GYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp SCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred cccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 1 14678889885 5444454556678877754
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.55 E-value=0.24 Score=41.76 Aligned_cols=98 Identities=10% Similarity=0.092 Sum_probs=66.1
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-----------ceeEEee------cCCceEEEEecCC---CCeEEE
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-----------PVMSFDF------RETPIKAVAEEPD---SFNIYI 275 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~------~~~~i~~v~~s~~---~~~l~~ 275 (326)
+..+..+| +|.+||..+ +..|.|-.+..... ..+.+.. ...+|..+.|+|- +..|++
T Consensus 68 i~qlvlSp--sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 68 TFHVISST--SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp TCEEEECT--TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred eeEEEECC--CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 55677776 566777665 67899998773211 1123332 2467999999996 568999
Q ss_pred EcCCCcEEEEECCCC--eEEEEEc---------ceecceEEEEEECCCCCEEEE
Q 020454 276 GNGSGDLASVDIRTG--KLLGCFI---------GKCSGSIRSIARHPTLPIIAS 318 (326)
Q Consensus 276 g~~dg~v~iwd~~~~--~~~~~~~---------~~~~~~v~~l~~~p~~~~l~s 318 (326)
-..|+.|++||+... ++. .+. .. ...|.+++|.+++-.|..
T Consensus 145 LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~-~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDAR-VNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp EETTSCEEEEETTCTTSCCE-EESCCCSEEESCSS-CCCEEEEEECTTSSCEEE
T ss_pred EecCCEEEEEEcccCCCCCc-chhccccccCCCcc-cceEEEEEEcCCCcEEEE
Confidence 999999999999852 222 222 11 257889999987765554
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.46 E-value=0.3 Score=40.44 Aligned_cols=229 Identities=11% Similarity=0.088 Sum_probs=113.1
Q ss_pred EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec----C----CcEEEEE
Q 020454 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT----K----GKASMRS 139 (326)
Q Consensus 68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~----~----g~v~i~~ 139 (326)
|+++..+|.|++++. +++ ..+..+. ..........++++.+... .++.|+++.. + +.|..++
T Consensus 42 l~V~e~~g~I~~~d~-~G~--~~~~~~~--v~~~g~~g~~gia~~pdf~-----~~g~lyv~~~~~~~~~~~~~~v~r~~ 111 (354)
T 3a9g_A 42 YLVTERPGRLVLISP-SGK--KLVASFD--VANVGEAGLLGLALHPEFP-----KKSWVYLYASYFAEGGHIRNRVIRGR 111 (354)
T ss_dssp EEEEETTTEEEEECS-SCE--EEEEECC--CCCSTTCSEEEEEECTTTT-----TSCEEEEEEEEECGGGCEEEEEEEEE
T ss_pred EEEEeCCCEEEEEeC-CCc--eEeeccc--eeecCCCceeeEEeCCCCC-----cCCEEEEEEeccCCCCCcceEEEEEE
Confidence 666777799999974 444 2222111 0012234567787644110 1346655544 2 4555555
Q ss_pred ccccccccccccceE-EEEEccCCCceEEEEEcCCCCEEEEecCC-------------CeEEEEECCCce---------e
Q 020454 140 IEVTKVSAESSCSTV-KSWNVCASGTIAFSKVDISEKFSLFGGKG-------------VEVNVWDLDKCE---------K 196 (326)
Q Consensus 140 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-------------~~i~iwd~~~~~---------~ 196 (326)
....... ......+ .-+..........|.|.|++.+.++-+.. +.|.-++....- .
T Consensus 112 ~~~~~~~-~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~ 190 (354)
T 3a9g_A 112 LDGSTFK-LKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSP 190 (354)
T ss_dssp ECSSSCC-EEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCC
T ss_pred ECCCCcC-cCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCc
Confidence 4432100 0000111 11221111234678999999877664432 344444433210 0
Q ss_pred eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC---eEEEEeCCC---------------CCCceeEEeecC
Q 020454 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSA---------------QRRPVMSFDFRE 258 (326)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg---~v~iwd~~~---------------~~~~~~~~~~~~ 258 (326)
++. .+ + .....++|.|. ++.++++-.... .|.+...-. ...++..+....
T Consensus 191 i~a-~G-------~---rnp~Gla~d~~-~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 258 (354)
T 3a9g_A 191 IWS-YG-------H---RNPQGIDWHRA-SGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET 258 (354)
T ss_dssp EEE-EC-------C---SCCCEEEECTT-TCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred EEE-Ec-------c---CCcceEEEeCC-CCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence 110 01 1 12347788873 344555433222 243332111 012334441122
Q ss_pred CceEEEEec-------CCCCeEEEEcCCCcEEEEECCCC-eEE--EEEc-ceecceEEEEEECCCCCEEEEec
Q 020454 259 TPIKAVAEE-------PDSFNIYIGNGSGDLASVDIRTG-KLL--GCFI-GKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 259 ~~i~~v~~s-------~~~~~l~~g~~dg~v~iwd~~~~-~~~--~~~~-~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
.....++|. .+|.++++.-..+.|...++... +.. ..+. +. ...+..+++.|++.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV-FGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT-SCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC-CCCeeEEEECCCCcEEEEEe
Confidence 456778883 46767777667778999998753 332 2332 22 45789999999998777653
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.14 E-value=0.46 Score=39.27 Aligned_cols=190 Identities=11% Similarity=0.063 Sum_probs=98.9
Q ss_pred cCCcEEEEecccc--ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec---CCcEEEEEcccccccc
Q 020454 73 KNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---KGKASMRSIEVTKVSA 147 (326)
Q Consensus 73 ~dg~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~---~g~v~i~~~~~~~~~~ 147 (326)
.+|.|.++|+.+. +. ..+..... +.........++..+.... ...+|+++.. +..+.+|+++....
T Consensus 81 ~~G~I~~~d~~~~~~~~-~~l~~~g~-~~~~~~f~PhGi~~~~d~d-----g~~~L~Vvnh~~~~s~ielf~~d~~~~-- 151 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV-SELEIIGN-TLDISSFNPHGISTFIDDD-----NTVYLLVVNHPGSSSTVEVFKFQEEEK-- 151 (355)
T ss_dssp -CCEEEEEETTSSSCCE-EECEEECS-SCCGGGCCEEEEEEEECTT-----CCEEEEEEECSTTCCEEEEEEEETTTT--
T ss_pred CCCeEEEEecCCCCCce-EEEEccCC-CCCcCceeeeeeEEEECCC-----CcEEEEEEECCCCCCeEEEEEEECCCC--
Confidence 6899999998632 32 22222110 0011223556666544210 1224555532 45677887764321
Q ss_pred ccccceEEEEEccCCCceEEEEEcCCCCEEEEecC-----------------CCeEEEEECCCceeeeeecCCCCCCCCc
Q 020454 148 ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-----------------GVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (326)
Q Consensus 148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 210 (326)
....+..+.-..-...+.+.+.++|.+.++... .+.|.-+|.. +......+
T Consensus 152 --~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~-------- 219 (355)
T 3sre_A 152 --SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEG-------- 219 (355)
T ss_dssp --EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEE--------
T ss_pred --EEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecC--------
Confidence 111223333333446889999999987776541 2334444432 21111111
Q ss_pred CCCCceeeeEEeecCCCcE-EEEEeCCCeEEEEeCCCCCCc--eeEEeecCCceEEEEecC-CCCeEEEEcCC-CcEEEE
Q 020454 211 FTPTWFTSAAFLSIDDHRK-FVAGTNDHQVRLYDTSAQRRP--VMSFDFRETPIKAVAEEP-DSFNIYIGNGS-GDLASV 285 (326)
Q Consensus 211 ~~~~~v~~~~~~p~~~~~~-l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~i~~v~~s~-~~~~l~~g~~d-g~v~iw 285 (326)
-...+.++|+| +++. +++-+..+.|..|++...... ...+. .....-.+++.+ +|++.+++..+ +.|..|
T Consensus 220 --l~~pNGia~sp--Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~ 294 (355)
T 3sre_A 220 --FDFANGINISP--DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFY 294 (355)
T ss_dssp --ESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSC
T ss_pred --CcccCcceECC--CCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEE
Confidence 02356899998 4444 455567889999998643221 12332 235667889998 58877766544 344444
Q ss_pred ECC
Q 020454 286 DIR 288 (326)
Q Consensus 286 d~~ 288 (326)
+..
T Consensus 295 ~P~ 297 (355)
T 3sre_A 295 DAE 297 (355)
T ss_dssp CTT
T ss_pred CCC
Confidence 443
No 306
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.08 E-value=1.1 Score=43.34 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=39.6
Q ss_pred CcEEEEEe----------CCCeEEEEeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEE
Q 020454 227 HRKFVAGT----------NDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG 294 (326)
Q Consensus 227 ~~~l~~~~----------~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~ 294 (326)
..++++|+ ..|.|++|++...+ +.+.+. ..++++++++-- +| +|++|- ...|++|++...+.+.
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~ 918 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-EVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELR 918 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-EESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-EcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEE
Confidence 35888886 35789999986321 112222 235788887732 45 555543 4689999998665433
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.95 E-value=0.56 Score=38.71 Aligned_cols=59 Identities=12% Similarity=0.100 Sum_probs=38.3
Q ss_pred ceEEEEecCCCCeEEEEcCCCcEEEEECCCCe----E--EEEEcceecceEEEEEECCCCCEEEEec
Q 020454 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK----L--LGCFIGKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~----~--~~~~~~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
....++| .+|..+++.-..+.|...++.... . ...+-.. ...+..+++.|++.+.++..
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-FGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-SCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-CCCeeEEEECCCCcEEEEEe
Confidence 4567777 467666666667778888776432 1 1222222 45789999999998776653
No 308
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.76 E-value=1.1 Score=40.34 Aligned_cols=237 Identities=9% Similarity=-0.021 Sum_probs=117.0
Q ss_pred eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCC
Q 020454 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (326)
Q Consensus 17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~ 96 (326)
++.-.....|++.++.+.......+ . ..-....++.+... .+.++++-..++.|..+++........+..
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~---~---~~~~~~~~ld~~~~-~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~--- 80 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIV---V---GGLEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVV--- 80 (619)
T ss_dssp CEEEECSSBEEEECCC------------C---BCCSCEEEEEEETT-TTEEEEEETTTTEEEEEEC-----CEEEEC---
T ss_pred eEEEeccccEEEEeCCCCcceEEEE---E---cCCCceEEEEEEeC-CCEEEEEECCCCeEEEEEccCCCceEEEEe---
Confidence 4445556678888887541011111 1 11122234444322 233444445567888888754321122211
Q ss_pred CCCCCCCCCeeeeecccccccccCCCCc-eEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC
Q 020454 97 SGAQPEDDGIVGLHLFKRQREESSSRSR-TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (326)
Q Consensus 97 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (326)
.+-....++++.. .++ .+++-...+.|.+.+++... .+..-.........++++|.+.
T Consensus 81 ----~~~~~P~GlAvD~--------~~~~ly~~d~~~~~I~v~~~dG~~---------~~~l~~~~l~~P~~Iavdp~~g 139 (619)
T 3s94_A 81 ----SGLLSPDGLACDW--------LGEKLYWTDSETNRIEVSNLDGSL---------RKVLFWQELDQPRAIALDPSSG 139 (619)
T ss_dssp ----SSCSCEEEEEEET--------TTTEEEEEETTTTEEEEEETTSCS---------CEEEECSSCSCCCCEEEETTTT
T ss_pred ----CCCCCcCeEEEEe--------cCCEEEEEeCCCCEEEEEECCCCC---------EEEEEeCCCCCCceEEEecCCC
Confidence 1223566677532 233 34444566788888765322 1111112234567889998765
Q ss_pred EEEEec--CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454 176 FSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (326)
Q Consensus 176 ~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 253 (326)
+|.... ....|...++........... ...+.+++++.+. +++++++-...+.|..+|+..... ...
T Consensus 140 ~ly~tD~g~~~~I~r~~~dG~~~~~l~~~---------~~~~P~Glald~~-~~~LY~aD~~~~~I~~~~~dG~~~-~~~ 208 (619)
T 3s94_A 140 FMYWTDWGEVPKIERAGMDGSSRFIIINS---------EIYWPNGLTLDYE-EQKLYWADAKLNFIHKSNLDGTNR-QAV 208 (619)
T ss_dssp EEEEEECSSSCEEEEEETTSCSCEEEECS---------SCSSEEEEEEETT-TTEEEEEETTTCCEEEESSSCCEE-C--
T ss_pred eEEEeccCCCCEEEEEECCCCceEEEEeC---------CCCCCcEEEEEcc-CCEEEEEeCCCCeEEEecCCCCcc-EEE
Confidence 554433 245677777654322222211 1145778999874 454566666778899999874311 111
Q ss_pred EeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeEEEEEc
Q 020454 254 FDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 254 ~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
....-.....+++..+ .|+ +-...+.|...|..+++....+.
T Consensus 209 ~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~ 251 (619)
T 3s94_A 209 VKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIH 251 (619)
T ss_dssp -------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECC
T ss_pred EeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEe
Confidence 1111122346677544 555 44467789999998876544443
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.72 E-value=0.45 Score=39.34 Aligned_cols=149 Identities=9% Similarity=-0.018 Sum_probs=75.2
Q ss_pred ceEEEEEcCCCC-EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec--CCCcEEEEEeC-----
Q 020454 164 TIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI--DDHRKFVAGTN----- 235 (326)
Q Consensus 164 ~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~~l~~~~~----- 235 (326)
....|++.|+++ ++++ ...+.|++++.. ++....+..... ...........++++|. .++.+.++-+.
T Consensus 19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPD--VWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCC--CCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcc--cccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 567899999998 6654 567899999853 332111111110 00011234578899883 13434444332
Q ss_pred --CCeEEEEeCCCCCCce---eE-Eee------cCCceEEEEecCCCCeEEEEcC-------------CCcEEEEECCCC
Q 020454 236 --DHQVRLYDTSAQRRPV---MS-FDF------RETPIKAVAEEPDSFNIYIGNG-------------SGDLASVDIRTG 290 (326)
Q Consensus 236 --dg~v~iwd~~~~~~~~---~~-~~~------~~~~i~~v~~s~~~~~l~~g~~-------------dg~v~iwd~~~~ 290 (326)
...|..|+.......+ .. +.. ....-..++|.|||.+.++-+. .|.|.-++....
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 2356666654321111 11 111 1122457999999955544322 246777776532
Q ss_pred e------------EEEEEcceecceEEEEEECC-CCCEEE
Q 020454 291 K------------LLGCFIGKCSGSIRSIARHP-TLPIIA 317 (326)
Q Consensus 291 ~------------~~~~~~~~~~~~v~~l~~~p-~~~~l~ 317 (326)
- ....+... ......++|+| ++.+.+
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G-~rnp~gl~~d~~~g~l~~ 213 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYG-IRNPQGMAMNPWSNALWL 213 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEEC-CSEEEEEEEETTTTEEEE
T ss_pred CCCCCCCcCCCCCCccEEEEc-CcCccceEEECCCCCEEE
Confidence 0 11222211 23467899999 554443
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.72 E-value=0.61 Score=37.39 Aligned_cols=133 Identities=13% Similarity=0.058 Sum_probs=68.7
Q ss_pred CCCEEEEecCC------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC---------CC
Q 020454 173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------DH 237 (326)
Q Consensus 173 ~~~~l~sg~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~---------dg 237 (326)
++++++.|+.+ ..+.+||..+.+-... ...+ .+..-.++... ++++++.|+. -.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSML-------TQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCS-------SCCBSCEEEEE---TTEEEEECCEESCTTTCEECC
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCc-------CCcceeEEEEE---CCEEEEECCCCCCCCcccccc
Confidence 56777888765 4588999887653222 1111 11111122222 4556666653 34
Q ss_pred eEEEEeCCCCCCceeEEee---cCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeEEEE--EcceecceEEEE
Q 020454 238 QVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSI 307 (326)
Q Consensus 238 ~v~iwd~~~~~~~~~~~~~---~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~~~~--~~~~~~~~v~~l 307 (326)
.+.+||+.+. . -..+.. ....-..+.+ +++.++.|+.+ ..+.+||+.+.+.... ++.. ......+
T Consensus 170 ~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~ 244 (306)
T 3ii7_A 170 SCEVYDPATE-T-WTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK-GVTVKCA 244 (306)
T ss_dssp CEEEEETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC-BSCCEEE
T ss_pred eEEEeCCCCC-e-EEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC-ccceeEE
Confidence 5889998865 2 122211 1111122222 56666676653 4689999988754322 2211 1122223
Q ss_pred EECCCCCEEEEeccCc
Q 020454 308 ARHPTLPIIASCGFLE 323 (326)
Q Consensus 308 ~~~p~~~~l~s~s~D~ 323 (326)
.+ ++.+++.||.++
T Consensus 245 ~~--~~~i~v~GG~~~ 258 (306)
T 3ii7_A 245 AV--GSIVYVLAGFQG 258 (306)
T ss_dssp EE--TTEEEEEECBCS
T ss_pred EE--CCEEEEEeCcCC
Confidence 33 667888888764
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.58 E-value=0.69 Score=37.00 Aligned_cols=133 Identities=12% Similarity=0.055 Sum_probs=67.2
Q ss_pred CCCEEEEecCCC-----eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-------CeEE
Q 020454 173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-------HQVR 240 (326)
Q Consensus 173 ~~~~l~sg~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-------g~v~ 240 (326)
++++++.|+.++ .+.+||+.+.+-... ...+ .+..-.+++.. ++++++.|+.+ ..+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-APMN-------TRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-CCCS-------SCCBSCEEEEE---TTEEEEECCEETTTTEECCCEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeec-CCCC-------CcccCceEEEE---CCEEEEEeCCCCCCCccccEEE
Confidence 567777777653 477888876653322 1111 11111122222 45566666542 3588
Q ss_pred EEeCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeEEEE--EcceecceEEEEEEC
Q 020454 241 LYDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSIARH 310 (326)
Q Consensus 241 iwd~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~ 310 (326)
+||+.+. . -..+. ........+.+ +++.++.|+.+ ..+.+||+.+.+.... +... ...-..+.
T Consensus 177 ~yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~-- 249 (302)
T 2xn4_A 177 CYNATTN-E-WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-RRNAGVCA-- 249 (302)
T ss_dssp EEETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEE--
T ss_pred EEeCCCC-c-EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-cccCeEEE--
Confidence 9998754 1 11111 11111222233 56677777654 3699999988765432 1111 11111222
Q ss_pred CCCCEEEEeccCc
Q 020454 311 PTLPIIASCGFLE 323 (326)
Q Consensus 311 p~~~~l~s~s~D~ 323 (326)
.++.+++.||.++
T Consensus 250 ~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 250 VNGLLYVVGGDDG 262 (302)
T ss_dssp ETTEEEEECCBCS
T ss_pred ECCEEEEECCcCC
Confidence 2667788887765
No 312
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.51 E-value=0.35 Score=36.82 Aligned_cols=144 Identities=6% Similarity=-0.039 Sum_probs=75.8
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCcee-eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (326)
Q Consensus 164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw 242 (326)
.+..++|+|++.+.++ .++.+.-.+..+... .+.-.......... ..-.++.|.| ++.+.++ .||.|+-+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw---~~F~a~~fD~--~G~LYav--~dG~iyr~ 112 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGW---NQFQFLFFDP--NGYLYAV--SKDKLYKA 112 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCG---GGCSEEEECT--TSCEEEE--ETTEEEEE
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccc---ccceEEEECC--CCCEEEe--CCCEEEEe
Confidence 5679999999887776 677766666533111 11000000000000 0124667776 5645555 56999888
Q ss_pred eCCCCCCcee----EE--eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe------EEEEEc-ceecceEEEEEE
Q 020454 243 DTSAQRRPVM----SF--DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK------LLGCFI-GKCSGSIRSIAR 309 (326)
Q Consensus 243 d~~~~~~~~~----~~--~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~------~~~~~~-~~~~~~v~~l~~ 309 (326)
+..+...... .. ...=..+..|.+.|+|.+.++. |+.++-....++. ....+- .. -..-+.+.|
T Consensus 113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g-~~~yr~l~f 189 (236)
T 1tl2_A 113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGG-WDTFKFLFF 189 (236)
T ss_dssp SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSS-GGGEEEEEE
T ss_pred CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCC-cceEEEEEE
Confidence 8643212110 11 1111467999999999877776 7775443333211 011111 22 334556778
Q ss_pred CCCCCEEEEe
Q 020454 310 HPTLPIIASC 319 (326)
Q Consensus 310 ~p~~~~l~s~ 319 (326)
.|++.+.+..
T Consensus 190 ~~~G~l~~v~ 199 (236)
T 1tl2_A 190 SSVGTLFGVQ 199 (236)
T ss_dssp CTTSCEEEEE
T ss_pred CCCCcEEEEe
Confidence 8988766654
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.51 E-value=0.23 Score=41.17 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=61.7
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe---ecCCceEEEEecCC---CCeEEEEcC----C----Cc
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD---FRETPIKAVAEEPD---SFNIYIGNG----S----GD 281 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~~i~~v~~s~~---~~~l~~g~~----d----g~ 281 (326)
...++|.| +++ |+++..+|.|+++|.. +...+..+. ........|+++|+ +..|++... + +.
T Consensus 31 P~~ia~~p--dG~-l~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 31 PWSIAPLG--GGR-YLVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp EEEEEEEE--TTE-EEEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CeEEEEcC--CCe-EEEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 56889998 564 6666677999999743 322222221 12356889999998 556655443 2 57
Q ss_pred EEEEECCCC-------eEE-EEEcceecceEEEEEECCCCCEEEEecc
Q 020454 282 LASVDIRTG-------KLL-GCFIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 282 v~iwd~~~~-------~~~-~~~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
|..|+.... +.+ ..+..........|+|.|++.+.++.+.
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence 888887654 111 2233110123567999999987777553
No 314
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.37 E-value=1.5 Score=39.43 Aligned_cols=187 Identities=6% Similarity=-0.052 Sum_probs=99.9
Q ss_pred EecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEcccccccccc
Q 020454 71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAES 149 (326)
Q Consensus 71 g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~~ 149 (326)
=.....|+..++........+.. ..-....++.+.. .++.|+.. ...+.|..++++...
T Consensus 14 ~~~~~~I~~i~~~~~~~~~~~~~-------~~~~~~~~ld~~~--------~~~~ly~sD~~~~~I~r~~~~g~~----- 73 (619)
T 3s94_A 14 YANRRDLRLVDATNGKENATIVV-------GGLEDAAAVDFVF--------SHGLIYWSDVSEEAIKRTEFNKTE----- 73 (619)
T ss_dssp EECSSBEEEECCC---------C-------BCCSCEEEEEEET--------TTTEEEEEETTTTEEEEEEC---------
T ss_pred EeccccEEEEeCCCCcceEEEEE-------cCCCceEEEEEEe--------CCCEEEEEECCCCeEEEEEccCCC-----
Confidence 34457889998864421111111 1123456676543 33455444 345666666654321
Q ss_pred ccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc
Q 020454 150 SCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (326)
Q Consensus 150 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 228 (326)
....+.. ..-.....+++++.+ ++.++-...+.|.+.++............ + ....++++.|. .+.
T Consensus 74 --~~~~v~~-~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~------l---~~P~~Iavdp~-~g~ 140 (619)
T 3s94_A 74 --SVQNVVV-SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE------L---DQPRAIALDPS-SGF 140 (619)
T ss_dssp ---CEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS------C---SCCCCEEEETT-TTE
T ss_pred --ceEEEEe-CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCC------C---CCCceEEEecC-CCe
Confidence 0111111 122467899999855 55566667789999998754332222111 1 22457888885 454
Q ss_pred EEEEEe-CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEE-cCCCcEEEEECCCCe
Q 020454 229 KFVAGT-NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGK 291 (326)
Q Consensus 229 ~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g-~~dg~v~iwd~~~~~ 291 (326)
++++-. ..+.|...++... .........-.....+++++++..|+.+ ...+.|..+|+....
T Consensus 141 ly~tD~g~~~~I~r~~~dG~-~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~ 204 (619)
T 3s94_A 141 MYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN 204 (619)
T ss_dssp EEEEECSSSCEEEEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE
T ss_pred EEEeccCCCCEEEEEECCCC-ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc
Confidence 555542 2467777777643 2222222233467899999987777655 456789999987543
No 315
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.14 E-value=1.7 Score=38.99 Aligned_cols=231 Identities=8% Similarity=-0.041 Sum_probs=127.2
Q ss_pred cCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCC
Q 020454 21 DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ 100 (326)
Q Consensus 21 ~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 100 (326)
+....|+..++.+. .......- ..-....++.++.. .+.+.++-..++.|..+++........+.
T Consensus 12 s~~~~I~~i~l~~~-----~~~~~~~~-~~~~~~~~l~~d~~-~~~lywtD~~~~~I~r~~~~g~~~~~v~~-------- 76 (628)
T 4a0p_A 12 SRRADIRRISLETN-----NNNVAIPL-TGVKEASALDFDVT-DNRIYWTDISLKTISRAFMNGSALEHVVE-------- 76 (628)
T ss_dssp EETTEEEEEESSCT-----TCEEECCC-CSCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEEC--------
T ss_pred EeCCcEEEEECCCC-----CcceEEEc-CCCCceEEEEEECC-CCEEEEEECCCCeEEEEECCCCCcEEEEe--------
Confidence 46678888888765 11111111 11123344555432 33345555667889988885443322222
Q ss_pred CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEe
Q 020454 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180 (326)
Q Consensus 101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 180 (326)
.+.....++++... .++.+++-...+.|.+.+++... ..+ +. ...-.....++++|...+|+..
T Consensus 77 ~g~~~P~GlAvD~~-------~~~LY~tD~~~~~I~v~~~dG~~-------~~~-l~-~~~l~~P~~iavdp~~G~lY~t 140 (628)
T 4a0p_A 77 FGLDYPEGMAVDWL-------GKNLYWADTGTNRIEVSKLDGQH-------RQV-LV-WKDLDSPRALALDPAEGFMYWT 140 (628)
T ss_dssp SSCSCCCEEEEETT-------TTEEEEEETTTTEEEEEETTSTT-------CEE-EE-CSSCCCEEEEEEETTTTEEEEE
T ss_pred CCCCCcceEEEEeC-------CCEEEEEECCCCEEEEEecCCCc-------EEE-EE-eCCCCCcccEEEccCCCeEEEe
Confidence 11134555665220 12344554556777777764321 011 11 1233467899999865555444
Q ss_pred c--CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC
Q 020454 181 G--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE 258 (326)
Q Consensus 181 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 258 (326)
. ..+.|...++........... + .+..++++.+. .+++.++-...+.|..+|+..... ..+...-
T Consensus 141 D~g~~~~I~r~~~dG~~~~~l~~~-------~---~~P~GlalD~~-~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l 207 (628)
T 4a0p_A 141 EWGGKPKIDRAAMDGSERTTLVPN-------V---GRANGLTIDYA-KRRLYWTDLDTNLIESSNMLGLNR--EVIADDL 207 (628)
T ss_dssp ECSSSCEEEEEETTSCSCEEEECS-------C---SSEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSC--EEEEECC
T ss_pred CCCCCCEEEEEeCCCCceEEEECC-------C---CCcceEEEccc-cCEEEEEECCCCEEEEEcCCCCce--EEeeccC
Confidence 3 356788888765433222221 1 45678999874 344556667788999999975433 2333333
Q ss_pred CceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeEEEEEc
Q 020454 259 TPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 259 ~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
.....+++.. + .|+ +-...+.|...|..+++....+.
T Consensus 208 ~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 208 PHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp SCEEEEEEET-T-EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCceEEEEEC-C-EEEEecCCCCEEEEEECCCCCceEEEe
Confidence 4456777754 3 555 54457889999987776544444
No 316
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.06 E-value=1.5 Score=37.70 Aligned_cols=111 Identities=9% Similarity=0.020 Sum_probs=59.0
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCceee--eeecCCCCCCCCcCCCCceeeeEEeec--CCCcEEEEEeC---
Q 020454 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSI--DDHRKFVAGTN--- 235 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~~l~~~~~--- 235 (326)
.....|++.|+++++++-...+.|++++..+++.. ..+...... .........++|+|. .++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~---~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVND---ADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCC---TTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccc---cCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 35678999999998877554457888886544432 222111000 001234668999984 13333333332
Q ss_pred ---------CCeEEEEeCCCCCC------ceeE-Eee-cCCceEEEEecCCCCeEEEE
Q 020454 236 ---------DHQVRLYDTSAQRR------PVMS-FDF-RETPIKAVAEEPDSFNIYIG 276 (326)
Q Consensus 236 ---------dg~v~iwd~~~~~~------~~~~-~~~-~~~~i~~v~~s~~~~~l~~g 276 (326)
...|.-|+...... .+.. +.. .......|+|.|||.+.++-
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE
Confidence 23455555432211 1111 111 12357889999999866643
No 317
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.04 E-value=1.2 Score=36.61 Aligned_cols=149 Identities=11% Similarity=-0.019 Sum_probs=80.3
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCceee--eeecCCCCCCCCcCCCCceeeeEEeec--CCCcEEEEE--eCC
Q 020454 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSI--DDHRKFVAG--TND 236 (326)
Q Consensus 163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~~l~~~--~~d 236 (326)
.....|++.|++.++++--..+.|++++...++.. ..+.... .........++++|. .++.+.++- ..+
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~-----~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVS-----PSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC-----CBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCcee-----ecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 46778999999998877655899999987655432 1111111 111234678999984 234333322 234
Q ss_pred CeEEEEeCCCCC-------Cc--ee-EEe-ecCCceEEEEecCCCCeEEEEc-------------CCCcEEEEECCCCe-
Q 020454 237 HQVRLYDTSAQR-------RP--VM-SFD-FRETPIKAVAEEPDSFNIYIGN-------------GSGDLASVDIRTGK- 291 (326)
Q Consensus 237 g~v~iwd~~~~~-------~~--~~-~~~-~~~~~i~~v~~s~~~~~l~~g~-------------~dg~v~iwd~~~~~- 291 (326)
+.|.-|...... .. +. .+. .....-..|+|.|||.+.++-+ ..|.|.-++....-
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 566666554310 11 11 121 1122346789999997666532 23555555544210
Q ss_pred ------EEEEEc-ceecceEEEEEECCCCCEEEE
Q 020454 292 ------LLGCFI-GKCSGSIRSIARHPTLPIIAS 318 (326)
Q Consensus 292 ------~~~~~~-~~~~~~v~~l~~~p~~~~l~s 318 (326)
....+. +| . ....++|+|++.+.++
T Consensus 187 ~~nPf~~~~i~a~G~-R-Np~Gla~dp~G~L~~~ 218 (347)
T 3das_A 187 PGNPFPGSPVYSYGH-R-NVQGLAWDDKQRLFAS 218 (347)
T ss_dssp TTCSSTTCCEEEBCC-S-BCCEEEECTTCCEEEE
T ss_pred CCCCCCCCeEEeeCC-C-CcceEEECCCCCEEEE
Confidence 011222 33 3 3568999998765543
No 318
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.03 E-value=1.1 Score=36.02 Aligned_cols=133 Identities=13% Similarity=0.076 Sum_probs=67.9
Q ss_pred CCCEEEEecCC-----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----CeEEEE
Q 020454 173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLY 242 (326)
Q Consensus 173 ~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~v~iw 242 (326)
++++++.|+.+ ..+.+||+.+.+-.... ..+ .+..-.++... ++++++.|+.+ ..+.+|
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~y 189 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PML-------TRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECY 189 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCS-------SCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCC-------ccccceEEEEE---CCEEEEEeCCCCCCcCceEEEE
Confidence 56777777754 35888998776532221 111 11111122222 45566776654 458889
Q ss_pred eCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeEEEE--EcceecceEEEEEECCC
Q 020454 243 DTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPT 312 (326)
Q Consensus 243 d~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~p~ 312 (326)
|+.+. . -..+. ........+.+ +++.++.|+.+ ..+.+||+.+.+.... ++.. ......+.+ +
T Consensus 190 d~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~ 262 (308)
T 1zgk_A 190 YPERN-E-WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR-RSALGITVH--Q 262 (308)
T ss_dssp ETTTT-E-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--T
T ss_pred eCCCC-e-EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC-ccceEEEEE--C
Confidence 98754 1 11111 11111222233 56666777654 5699999988764431 2211 111112222 5
Q ss_pred CCEEEEeccCc
Q 020454 313 LPIIASCGFLE 323 (326)
Q Consensus 313 ~~~l~s~s~D~ 323 (326)
+++++.||.++
T Consensus 263 ~~i~v~GG~~~ 273 (308)
T 1zgk_A 263 GRIYVLGGYDG 273 (308)
T ss_dssp TEEEEECCBCS
T ss_pred CEEEEEcCcCC
Confidence 67888887665
No 319
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=94.99 E-value=1.9 Score=38.71 Aligned_cols=206 Identities=7% Similarity=-0.057 Sum_probs=115.4
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCcEEEEEcccccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTKV 145 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~v~i~~~~~~~~ 145 (326)
+|+.+ ....|+..++...+....+.. .+-..+.++.+.. .++.++ +-..++.|+.++++...
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~-------~~~~~~~~l~~d~--------~~~~lywtD~~~~~I~r~~~~g~~- 70 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPL-------TGVKEASALDFDV--------TDNRIYWTDISLKTISRAFMNGSA- 70 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCC-------CSCSCEEEEEEET--------TTTEEEEEETTTTEEEEEETTSCS-
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEc-------CCCCceEEEEEEC--------CCCEEEEEECCCCeEEEEECCCCC-
Confidence 44444 668899999976544222221 1123456677644 334444 44556777777654321
Q ss_pred ccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454 146 SAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (326)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 224 (326)
...+.. ........+++++.+ ++.++-...+.|.+.++........... .+ ....++++.|.
T Consensus 71 -------~~~v~~-~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~------~l---~~P~~iavdp~ 133 (628)
T 4a0p_A 71 -------LEHVVE-FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK------DL---DSPRALALDPA 133 (628)
T ss_dssp -------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECS------SC---CCEEEEEEETT
T ss_pred -------cEEEEe-CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeC------CC---CCcccEEEccC
Confidence 111222 112346678888655 4555656678899999875432211111 01 23568899885
Q ss_pred CCCcEEEEE-eCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeEEEEEcceecc
Q 020454 225 DDHRKFVAG-TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSG 302 (326)
Q Consensus 225 ~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~ 302 (326)
.+.++++- +..+.|...++... . ...+...-.....+++++++..|+.+. ..+.|..+|+..... ..+... ..
T Consensus 134 -~G~lY~tD~g~~~~I~r~~~dG~-~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-l~ 208 (628)
T 4a0p_A 134 -EGFMYWTEWGGKPKIDRAAMDGS-E-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-LP 208 (628)
T ss_dssp -TTEEEEEECSSSCEEEEEETTSC-S-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-CS
T ss_pred -CCeEEEeCCCCCCEEEEEeCCCC-c-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-CC
Confidence 45454544 23578888888744 2 233323445678999999877777554 567899999875433 223222 22
Q ss_pred eEEEEEECC
Q 020454 303 SIRSIARHP 311 (326)
Q Consensus 303 ~v~~l~~~p 311 (326)
....|++..
T Consensus 209 ~P~glav~~ 217 (628)
T 4a0p_A 209 HPFGLTQYQ 217 (628)
T ss_dssp CEEEEEEET
T ss_pred CceEEEEEC
Confidence 334666654
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.91 E-value=1.1 Score=35.66 Aligned_cols=133 Identities=11% Similarity=0.081 Sum_probs=68.6
Q ss_pred CCCEEEEecCC-----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----CeEEEE
Q 020454 173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLY 242 (326)
Q Consensus 173 ~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~v~iw 242 (326)
++++++.|+.+ ..+.+||+.+.+-...... + .+..-.++... ++++++.|+.+ ..+.+|
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~ 180 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM-Q-------TAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKY 180 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC-S-------SCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC-C-------CCcccceEEEE---CCEEEEECCCCCCcccceEEEE
Confidence 56777777754 3588899887653222111 1 01111122222 45567776654 468899
Q ss_pred eCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeEEEE--EcceecceEEEEEECCC
Q 020454 243 DTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPT 312 (326)
Q Consensus 243 d~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~p~ 312 (326)
|+.+. . -..+. ........+.+ +++.++.|+.+ ..+.+||+.+.+.... ++.. ......+.+ +
T Consensus 181 d~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~ 253 (301)
T 2vpj_A 181 DPHTG-H-WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP-RCYVGATVL--R 253 (301)
T ss_dssp ETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE--T
T ss_pred eCCCC-c-EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc-ccceeEEEE--C
Confidence 98754 2 12221 11111222233 56666777664 4699999998765432 2211 111122222 6
Q ss_pred CCEEEEeccCc
Q 020454 313 LPIIASCGFLE 323 (326)
Q Consensus 313 ~~~l~s~s~D~ 323 (326)
+++++.||.++
T Consensus 254 ~~i~v~GG~~~ 264 (301)
T 2vpj_A 254 GRLYAIAGYDG 264 (301)
T ss_dssp TEEEEECCBCS
T ss_pred CEEEEEcCcCC
Confidence 67788887664
No 321
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.85 E-value=0.29 Score=40.44 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=60.5
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-CceeEEe---ecCCceEEEEecCC---CCeEEEEcCC------CcE
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFD---FRETPIKAVAEEPD---SFNIYIGNGS------GDL 282 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~---~~~~~i~~v~~s~~---~~~l~~g~~d------g~v 282 (326)
...++|.| +++ ++++..+|.|++++ . +. ..+..+. ........|+++|+ +..|++.... +.|
T Consensus 33 P~~ia~~p--dG~-l~V~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 33 PWALAFLP--DGG-MLIAERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp EEEEEECT--TSC-EEEEETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred ceEEEEcC--CCe-EEEEeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45788887 565 55556679999998 2 31 1122111 12356789999998 5566654432 578
Q ss_pred EEEECCCCe-----E-EEEEc---ceecceEEEEEECCCCCEEEEec
Q 020454 283 ASVDIRTGK-----L-LGCFI---GKCSGSIRSIARHPTLPIIASCG 320 (326)
Q Consensus 283 ~iwd~~~~~-----~-~~~~~---~~~~~~v~~l~~~p~~~~l~s~s 320 (326)
..|+...++ . +..+. +. ......|+|.|++.+.++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~-~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHG-LHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTC-CCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCC-CcCCceEEECCCCCEEEEEC
Confidence 888877542 1 22243 11 12346899999998777654
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.04 E-value=1.9 Score=34.64 Aligned_cols=133 Identities=15% Similarity=0.113 Sum_probs=67.2
Q ss_pred CCCEEEEecCC--------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC------CCe
Q 020454 173 SEKFSLFGGKG--------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQ 238 (326)
Q Consensus 173 ~~~~l~sg~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~------dg~ 238 (326)
++++++.|+.+ +.+.+||..+.+-... ...+ .+..-.++... ++++++.|+. -..
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~ 166 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES-DPLP-------YVVYGHTVLSH---MDLVYVIGGKGSDRKCLNK 166 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC-CCCS-------SCCBSCEEEEE---TTEEEEECCBCTTSCBCCC
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC-CCCC-------CcccceeEEEE---CCEEEEEeCCCCCCcccce
Confidence 56777777743 4588999887653221 1111 11111122222 4556677765 246
Q ss_pred EEEEeCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCCC-----cEEEEECCCCeEEEE--EcceecceEEEEE
Q 020454 239 VRLYDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGSG-----DLASVDIRTGKLLGC--FIGKCSGSIRSIA 308 (326)
Q Consensus 239 v~iwd~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~dg-----~v~iwd~~~~~~~~~--~~~~~~~~v~~l~ 308 (326)
+.+||+.+. + -..+. ........+.+ +++.++.|+.++ .+.+||+.+.+.... ++.. ......+.
T Consensus 167 ~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~ 241 (315)
T 4asc_A 167 MCVYDPKKF-E-WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-RSSLSLVS 241 (315)
T ss_dssp EEEEETTTT-E-EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-CBSCEEEE
T ss_pred EEEEeCCCC-e-EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-ccceeEEE
Confidence 889998754 1 11111 11111222233 566777777654 588999988754432 1111 11112222
Q ss_pred ECCCCCEEEEeccCc
Q 020454 309 RHPTLPIIASCGFLE 323 (326)
Q Consensus 309 ~~p~~~~l~s~s~D~ 323 (326)
+ ++.+++.||.++
T Consensus 242 ~--~~~l~v~GG~~~ 254 (315)
T 4asc_A 242 L--VGTLYAIGGFAT 254 (315)
T ss_dssp E--TTEEEEEEEEEE
T ss_pred E--CCEEEEECCccc
Confidence 2 567777777643
No 323
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.86 E-value=1.8 Score=37.20 Aligned_cols=104 Identities=12% Similarity=0.054 Sum_probs=59.3
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-ceeEEee------cCCceEEEEecCC---CCeEEEEcC-------
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDF------RETPIKAVAEEPD---SFNIYIGNG------- 278 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~------~~~~i~~v~~s~~---~~~l~~g~~------- 278 (326)
..+++|.| +++++++-...+.|++++...+.. .+..+.. .......|+|+|+ +..|++...
T Consensus 29 P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 29 PHALLWGP--DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp EEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred ceEEEEcC--CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45888887 565555544335798888654421 1112211 2356679999996 556654442
Q ss_pred ------CCcEEEEECCCC-------eEEE-EEcceecceEEEEEECCCCCEEEEecc
Q 020454 279 ------SGDLASVDIRTG-------KLLG-CFIGKCSGSIRSIARHPTLPIIASCGF 321 (326)
Q Consensus 279 ------dg~v~iwd~~~~-------~~~~-~~~~~~~~~v~~l~~~p~~~~l~s~s~ 321 (326)
...|.-|++..+ +.+. .+..........|+|.|++.+.++.|.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 1222 233211235789999999998887664
No 324
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.33 E-value=2.8 Score=34.29 Aligned_cols=40 Identities=13% Similarity=-0.067 Sum_probs=20.7
Q ss_pred cEEEEECCCCeE--EEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454 281 DLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 281 ~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
.+.+||+.+.+. +..++.. ...-..+. .++++++.||.|+
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQG-RAYGVSLP--WNNSLLIIGGETA 327 (357)
T ss_dssp CCEEEECC---CEEEEECSSC-CBSSEEEE--ETTEEEEEEEECG
T ss_pred eEEEEecCCCceeeCCCCCCC-cccceeEE--eCCEEEEEeeeCC
Confidence 578999987643 3333322 11112222 3677888888765
No 325
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=92.90 E-value=2.9 Score=33.25 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=56.4
Q ss_pred CCCEEEEecCC-------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----CeEE
Q 020454 173 SEKFSLFGGKG-------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVR 240 (326)
Q Consensus 173 ~~~~l~sg~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~v~ 240 (326)
++++++.|+.+ ..+.+||+.+.+-... ...+ .+..-.++... ++++++.|+.+ ..+.
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~ 223 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI-AEMS-------TRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVE 223 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE-CCCS-------SCCBSCEEEEE---TTEEEEECCBSSSSBCCCEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC-CCCc-------cccccccEEEE---CCEEEEECCCCCCcccceEE
Confidence 56777777653 3588999887653322 1111 11111122222 45577777654 3688
Q ss_pred EEeCCCCCCceeEEee---cCCceEEEEecCCCCeEEEEcCCC-----cEEEEECCCCeEE
Q 020454 241 LYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSG-----DLASVDIRTGKLL 293 (326)
Q Consensus 241 iwd~~~~~~~~~~~~~---~~~~i~~v~~s~~~~~l~~g~~dg-----~v~iwd~~~~~~~ 293 (326)
+||+.+. + -..+.. .......+.+ +++.++.|+.++ .+.+||+.+.+..
T Consensus 224 ~yd~~~~-~-W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 224 VYDPTTN-A-WRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EEETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EEeCCCC-C-EeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 9998764 2 122211 1111122222 566777777653 4899999887643
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.62 E-value=0.64 Score=35.39 Aligned_cols=96 Identities=8% Similarity=0.041 Sum_probs=58.6
Q ss_pred ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC--------ceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET--------PIKAVAEEPDSFNIYIGNGSGDLASVD 286 (326)
Q Consensus 215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------~i~~v~~s~~~~~l~~g~~dg~v~iwd 286 (326)
.++.++|+| ++.+.++ .+|.++-.+..+... ..+..... ....+.|.|+|.+.++ .||.|+-++
T Consensus 42 ~~~~laf~P--~G~LYaV--~~G~Ly~~~~~t~~~--~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 42 NFKFLFLSP--GGELYGV--LNDKIYKGTPPTHDN--DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp TCSEEEECT--TSCEEEE--ETTEEEEESCCCSTT--CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred cceeEEECC--CccEEEE--eCCeEEEECCCCCCc--ccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeC
Confidence 356889999 5655555 678877777654211 11111111 2478899999987777 569998887
Q ss_pred CCCCe---EE---EEE-cceecceEEEEEECCCCCEEEEe
Q 020454 287 IRTGK---LL---GCF-IGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 287 ~~~~~---~~---~~~-~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
-.+.. .+ ..+ .+. =..+..|.+.|++.+-+..
T Consensus 114 pP~~~~~~Wl~~a~~vg~~g-w~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGG-WSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSS-GGGEEEEEECTTSCEEEEE
T ss_pred CCcCCCCceeccccEeccCC-CCceEEEEECCCceEEEEe
Confidence 64311 11 011 111 2467899999999876665
No 327
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.60 E-value=3.6 Score=33.52 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=80.0
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (326)
Q Consensus 167 ~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~ 246 (326)
+.-.||..+.+|.-. ..++.|||+++.+.+....-. ..|.--.|.. .+.|+-.+ +..|+-|++..
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~----------e~VvfWkWis---~~~L~lVT-~taVyHWs~~~ 135 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT----------DDVTFWKWIS---LNTVALVT-DNAVYHWSMEG 135 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS----------SCEEEEEECS---SSEEEEEE-SSEEEEEESST
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC----------CccEEEEecC---CCeEEEEc-CCcEEEEcccC
Confidence 344688888888765 678999999998877664432 2244446653 23666665 67899999986
Q ss_pred CCCceeEEeec----CCceEEEEecCCCCeEE-EEc------CCCcEEEEECCCCeEEEEEcce
Q 020454 247 QRRPVMSFDFR----ETPIKAVAEEPDSFNIY-IGN------GSGDLASVDIRTGKLLGCFIGK 299 (326)
Q Consensus 247 ~~~~~~~~~~~----~~~i~~v~~s~~~~~l~-~g~------~dg~v~iwd~~~~~~~~~~~~~ 299 (326)
...|++.++-| ...|..-..+++.++++ +|= -.|.+.+|..+.+ ..+.+.||
T Consensus 136 ~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh 198 (365)
T 2xzh_A 136 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 198 (365)
T ss_dssp TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCS
T ss_pred CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeee
Confidence 65788777754 34677777888888776 332 2367889988754 34456666
No 328
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=91.91 E-value=4.3 Score=32.90 Aligned_cols=146 Identities=12% Similarity=0.042 Sum_probs=80.4
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEEC--CCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeE
Q 020454 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDL--DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v 239 (326)
...+..+.+.+++.+++.+...+..+-+|- .+-+.+.. . .+..+..+.+.+ ++ .+...+.+|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~--~---------~~~~~~~~~~~~--~g-~~~~~~~~G~~ 227 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNR--T---------TSRRLHNMGFTP--DG-RLWMIVNGGKI 227 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEEC--C---------SSSCEEEEEECT--TS-CEEEEETTTEE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCC--C---------CCCccceeEECC--CC-CEEEEeCCceE
Confidence 446888999998888877655444444442 11122211 1 123466777765 44 34555668888
Q ss_pred EEEeCCCCCCceeEEe----ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce--ecceEEEEEECCCC
Q 020454 240 RLYDTSAQRRPVMSFD----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTL 313 (326)
Q Consensus 240 ~iwd~~~~~~~~~~~~----~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~~p~~ 313 (326)
++.+...+ ..-..+. .....+..+++.+++..++++. +|.+ ++....|+.-..+... ....+.++.|.+++
T Consensus 228 ~~s~~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~ 304 (327)
T 2xbg_A 228 AFSDPDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD 304 (327)
T ss_dssp EEEETTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT
T ss_pred EEecCCCC-CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC
Confidence 77742211 1011111 1123588899988877666654 6666 3444545433333311 13467888887555
Q ss_pred CEEEEeccCccC
Q 020454 314 PIIASCGFLEAA 325 (326)
Q Consensus 314 ~~l~s~s~D~~~ 325 (326)
.++.+|.+|.+
T Consensus 305 -~~~~~G~~G~i 315 (327)
T 2xbg_A 305 -QGFILGQKGIL 315 (327)
T ss_dssp -EEEEECSTTEE
T ss_pred -ceEEEcCCceE
Confidence 45666677653
No 329
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=91.47 E-value=5.1 Score=32.91 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=41.3
Q ss_pred CceEEEEecC-------CCCeEEEEcCCCcEEEEECCCCeEEEE--EcceecceEEEEEECCCCCEEEEe
Q 020454 259 TPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 259 ~~i~~v~~s~-------~~~~l~~g~~dg~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
.....++|.. +|.++++.-..+.|...++..++.... +-......+..|++.|++.+.++.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 3566777753 466777777778898888887655433 211113579999999999876653
No 330
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=91.45 E-value=4.4 Score=32.12 Aligned_cols=105 Identities=16% Similarity=0.112 Sum_probs=56.9
Q ss_pred CCCEEEEecCC-----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----CeEEEE
Q 020454 173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLY 242 (326)
Q Consensus 173 ~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~v~iw 242 (326)
++++++.|+.+ ..+.+||+.+.+-... ...+ .+..-.++... ++++++.|+.+ ..+.+|
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~y 227 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-TPMA-------TKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAY 227 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-CCCS-------SCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeC-CCCC-------cccccceEEEE---CCEEEEEeCCCCCcccceEEEE
Confidence 56777788765 4588999887653322 1111 11111122222 45577777654 468999
Q ss_pred eCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeE
Q 020454 243 DTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKL 292 (326)
Q Consensus 243 d~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~ 292 (326)
|+.+. + -..+. ........+.+ +++.++.|+.+ ..+.+||+++.+.
T Consensus 228 d~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 228 NIRTD-S-WTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp ETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred eCCCC-c-EEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 98864 2 12221 11111222233 56667777665 3588999987654
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=90.63 E-value=5.6 Score=31.88 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=65.3
Q ss_pred CCCEEEEecCC-------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC------CCeE
Q 020454 173 SEKFSLFGGKG-------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQV 239 (326)
Q Consensus 173 ~~~~l~sg~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~------dg~v 239 (326)
++++++.|+.+ ..+.+||+.+.+-.... ..+ .+..-.++.. . ++++++.|+. -..+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p-------~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLP-------IKVYGHNVIS-H--NGMIYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCS-------SCEESCEEEE-E--TTEEEEECCEESSSCBCCCE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCC-------CcccccEEEE-E--CCEEEEEcCCCCCCCccceE
Confidence 56777777754 34788888766533221 111 1111112222 2 4556666653 2358
Q ss_pred EEEeCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeEEE--EEcceecceEEEEEE
Q 020454 240 RLYDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLG--CFIGKCSGSIRSIAR 309 (326)
Q Consensus 240 ~iwd~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~ 309 (326)
.+||+.+. . -..+. ........+.+ +++.++.|+.+ ..+.+||+.+.+... .++.. ......+.
T Consensus 178 ~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~- 251 (318)
T 2woz_A 178 FIYNPKKG-D-WKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE-RSSISLVS- 251 (318)
T ss_dssp EEEETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC-CBSCEEEE-
T ss_pred EEEcCCCC-E-EEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc-ccceEEEE-
Confidence 89998864 2 11221 11111122233 56666676643 357789998765432 12211 11111222
Q ss_pred CCCCCEEEEeccCc
Q 020454 310 HPTLPIIASCGFLE 323 (326)
Q Consensus 310 ~p~~~~l~s~s~D~ 323 (326)
.++.+++.||.++
T Consensus 252 -~~~~i~v~GG~~~ 264 (318)
T 2woz_A 252 -LAGSLYAIGGFAM 264 (318)
T ss_dssp -ETTEEEEECCBCC
T ss_pred -ECCEEEEECCeec
Confidence 2567778887654
No 332
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.00 E-value=13 Score=33.80 Aligned_cols=141 Identities=12% Similarity=0.068 Sum_probs=70.6
Q ss_pred CCCCEEEEecCCC--eEEEEECCCceeeeeecCCCCCCCCcCCCC-ceeeeEEeecCCCcEEEEEeC--C-----CeEEE
Q 020454 172 ISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPT-WFTSAAFLSIDDHRKFVAGTN--D-----HQVRL 241 (326)
Q Consensus 172 ~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~~l~~~~~--d-----g~v~i 241 (326)
.++++++.||.++ .+.+||..+.+-..... ... +..+. .-.++.+.. ..+++++.|+. + ..+.+
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~--~g~---~p~~r~~~~a~v~~~-~~~~iyv~GG~~~~~~~~~~~v~~ 572 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP--KDE---FFQNSLVSAGLEFDP-VSKQGIILGGGFMDQTTVSDKAII 572 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCC--SSG---GGGSCCBSCEEEEET-TTTEEEEECCBCTTSSCBCCEEEE
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccC--CCC---CCCcccceeEEEEeC-CCCEEEEECCcCCCCCeeeCcEEE
Confidence 3778888888765 68999988765322111 000 11111 112233332 12556677765 2 46889
Q ss_pred EeCCCCCC-c---eeEEee----cCCceEEEEecCCCCeEEEEcC--------CCcEEEEECCCCeEEEEEcceecceE-
Q 020454 242 YDTSAQRR-P---VMSFDF----RETPIKAVAEEPDSFNIYIGNG--------SGDLASVDIRTGKLLGCFIGKCSGSI- 304 (326)
Q Consensus 242 wd~~~~~~-~---~~~~~~----~~~~i~~v~~s~~~~~l~~g~~--------dg~v~iwd~~~~~~~~~~~~~~~~~v- 304 (326)
||+.+..- + -..+.. .......+.+ .+++.++.|+. ...+.+||+.+.+.. .... ....
T Consensus 573 yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~-~~~~--p~~~~ 648 (695)
T 2zwa_A 573 FKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT-SIPI--SRRIW 648 (695)
T ss_dssp EEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE-ECCC--CHHHH
T ss_pred EEccCCccccceEEEEcCCCCCCCcccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE-Eeec--ccccc
Confidence 99886530 0 111111 1111222223 33666777764 346999999987664 2221 1111
Q ss_pred ---------EEEEECCCCCEEEEeccC
Q 020454 305 ---------RSIARHPTLPIIASCGFL 322 (326)
Q Consensus 305 ---------~~l~~~p~~~~l~s~s~D 322 (326)
.+....+++++++.||..
T Consensus 649 ~~~~p~~~gh~~~~~~~g~i~v~GGg~ 675 (695)
T 2zwa_A 649 EDHSLMLAGFSLVSTSMGTIHIIGGGA 675 (695)
T ss_dssp HHSCCCCSSCEEECC---CEEEECCEE
T ss_pred CCCCccceeeeEEEeCCCEEEEEeCCc
Confidence 233444566788888753
No 333
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=88.92 E-value=8.1 Score=31.23 Aligned_cols=140 Identities=10% Similarity=0.019 Sum_probs=73.7
Q ss_pred ceEEEEEcCCCCEEEEecCCCeE-EEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454 164 TIAFSKVDISEKFSLFGGKGVEV-NVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (326)
Q Consensus 164 ~v~~~~~~~~~~~l~sg~~d~~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw 242 (326)
.+..+.+.+++..++.+. ++.| +-.| .++.-...... .+..+..+.+.| ++.+++++...+..+-.
T Consensus 123 ~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~tW~~~~~~--------~~~~~~~~~~~~--~~~~~~~g~~G~~~~S~ 189 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMITN-VGAIYRTKD--SGKNWQALVQE--------AIGVMRNLNRSP--SGEYVAVSSRGSFYSTW 189 (327)
T ss_dssp CEEEEEEEETTEEEEEET-TCCEEEESS--TTSSEEEEECS--------CCCCEEEEEECT--TSCEEEEETTSSEEEEE
T ss_pred CeEEEEEECCCCEEEEeC-CccEEEEcC--CCCCCEEeecC--------CCcceEEEEEcC--CCcEEEEECCCcEEEEe
Confidence 466777766666666654 4443 2222 22221111111 113467788876 45466655444444444
Q ss_pred eC--CCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-c--eecceEEEEEECCCCCEEE
Q 020454 243 DT--SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-G--KCSGSIRSIARHPTLPIIA 317 (326)
Q Consensus 243 d~--~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-~--~~~~~v~~l~~~p~~~~l~ 317 (326)
|- .+. +++ -......+..+++.++++.+++ +.+|.+++.+...++.-..+. . .....+..+++.+++.+++
T Consensus 190 d~gG~tW-~~~--~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~ 265 (327)
T 2xbg_A 190 EPGQTAW-EPH--NRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWL 265 (327)
T ss_dssp CTTCSSC-EEE--ECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEE
T ss_pred CCCCCce-eEC--CCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEE
Confidence 43 222 111 1233457888999998876554 567887776433243322222 1 0023588999998877776
Q ss_pred Eec
Q 020454 318 SCG 320 (326)
Q Consensus 318 s~s 320 (326)
.+.
T Consensus 266 ~g~ 268 (327)
T 2xbg_A 266 AGG 268 (327)
T ss_dssp EES
T ss_pred EeC
Confidence 654
No 334
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=88.48 E-value=8.9 Score=31.16 Aligned_cols=209 Identities=9% Similarity=0.016 Sum_probs=105.0
Q ss_pred CCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC
Q 020454 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG 183 (326)
Q Consensus 104 ~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 183 (326)
..|.++....... .+..++..+.+|.++.-.+....... . .-+....+.....+..+........|+..+..
T Consensus 95 e~i~~~~~~~~~~-----~e~~~v~~T~~G~iKr~~l~~~~~~~--r-~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~ 166 (327)
T 3uc1_A 95 ERIAQVIQIRGYT-----DAPYLVLATRNGLVKKSKLTDFDSNR--S-GGIVAVNLRDNDELVGAVLCSAGDDLLLVSAN 166 (327)
T ss_dssp CCEEEEEEESSTT-----SSSEEEEEETTSEEEEEEGGGGCCCC--S-SCEESCBCCTTCCEEEEEEECTTCEEEEEETT
T ss_pred CEEEEEEEeccCC-----CCCEEEEEcCCCEEEEeEHHHhhccc--c-CceEEEEECCCCEEEEEEEecCCCEEEEEECC
Confidence 4565554443211 35689999999999988876543211 1 12233344445555555554455666677888
Q ss_pred CeEEEEECC--Cceeee-eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC------CceeEE
Q 020454 184 VEVNVWDLD--KCEKIW-TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSF 254 (326)
Q Consensus 184 ~~i~iwd~~--~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~ 254 (326)
|.+..+... .-.... ...+.. ...+.....|.++...+ ++..++..+..|.++.-.+.... .-+..+
T Consensus 167 G~~~rf~~~~~eip~~gr~a~Gv~--~i~L~~~d~Vv~~~~~~--~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~ 242 (327)
T 3uc1_A 167 GQSIRFSATDEALRPMGRATSGVQ--GMRFNIDDRLLSLNVVR--EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTV 242 (327)
T ss_dssp SEEEEEECCTTTSCCCCTTSBCEE--SSCCCTTCCEEEEEECC--TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESS
T ss_pred CeEEEEECcccccCcCCcCCCCee--eecCCCCCEEEEEEEEC--CCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEE
Confidence 888888766 211111 111111 12222334465655543 33478899999999988754221 122223
Q ss_pred eec--CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE-------EEEcceecceEEEEEECC-CCCEEEEeccCcc
Q 020454 255 DFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL-------GCFIGKCSGSIRSIARHP-TLPIIASCGFLEA 324 (326)
Q Consensus 255 ~~~--~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~-------~~~~~~~~~~v~~l~~~p-~~~~l~s~s~D~~ 324 (326)
... ...+..+....+...++..+.+|.+.-++...-+.. .-+.-.....|.++...+ +...+.+.+.+|+
T Consensus 243 ~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g~ 322 (327)
T 3uc1_A 243 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANGA 322 (327)
T ss_dssp CCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC--------------
T ss_pred EecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCCc
Confidence 221 344555444444556777788888888876542211 111111144677776654 3455666766664
No 335
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.27 E-value=12 Score=32.22 Aligned_cols=106 Identities=8% Similarity=0.062 Sum_probs=60.3
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC--CCceeEEe---------ecCCceEEEEecCC---CCeEEEE-cC--
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFD---------FRETPIKAVAEEPD---SFNIYIG-NG-- 278 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~---------~~~~~i~~v~~s~~---~~~l~~g-~~-- 278 (326)
...++|.|+.++ .|+++...|.|++++.... ..++..+. ..+.....|+|+|+ ..+|++. +.
T Consensus 16 P~~~a~~pdG~~-rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 16 PVGALHSGDGSQ-RLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp EEEEECCSSSSC-CEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred ceEEEECCCCCe-EEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 347788884322 4666678899999975422 12222221 11456789999997 2344432 21
Q ss_pred C----------CcEEEEECCC----------CeEEEEEc--ceecceEEEEEECCCCCEEEEeccCc
Q 020454 279 S----------GDLASVDIRT----------GKLLGCFI--GKCSGSIRSIARHPTLPIIASCGFLE 323 (326)
Q Consensus 279 d----------g~v~iwd~~~----------~~~~~~~~--~~~~~~v~~l~~~p~~~~l~s~s~D~ 323 (326)
+ ..|.-|.+.. .+.+..+. .. ......|+|.||+.+.++.|.-+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~-~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHR-KHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSS-SSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCC-cccCCcEeECCCCcEEEEeCCCC
Confidence 1 1344465532 23444433 11 23567999999998888777543
No 336
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=87.98 E-value=8.7 Score=30.47 Aligned_cols=107 Identities=17% Similarity=0.211 Sum_probs=56.2
Q ss_pred CCCEEEEecC---------CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----Ce
Q 020454 173 SEKFSLFGGK---------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQ 238 (326)
Q Consensus 173 ~~~~l~sg~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~ 238 (326)
++++++.|+. -..+.+||+.+.+-... ...+ .+..-.++... ++++++.|+.+ ..
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~ 217 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL-CPMI-------EARKNHGLVFV---KDKIFAVGGQNGLGGLDN 217 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEE-CCCS-------SCCBSCEEEEE---TTEEEEECCEETTEEBCC
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEEC-CCcc-------chhhcceEEEE---CCEEEEEeCCCCCCCCce
Confidence 5677777764 34588999887653222 1111 11111122222 45566776543 46
Q ss_pred EEEEeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeE
Q 020454 239 VRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKL 292 (326)
Q Consensus 239 v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~ 292 (326)
+.+||+.+.. ..+..+.........+.+ +++.++.|+.+ ..+.+||+.+.+.
T Consensus 218 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 218 VEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp EEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred EEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 8899987641 011111111112233333 56677788754 5689999988754
No 337
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=87.55 E-value=4.2 Score=35.74 Aligned_cols=104 Identities=9% Similarity=-0.041 Sum_probs=66.2
Q ss_pred CCCceeeeEEeecCCCcEEEEE-eCCCeEEEEeCCCCC-----C---c----eeEEeecCCceEEEEecCCCCeEEEEcC
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQR-----R---P----VMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~-~~dg~v~iwd~~~~~-----~---~----~~~~~~~~~~i~~v~~s~~~~~l~~g~~ 278 (326)
.+....++.++| +|++++++ -.+.++.++|.+... + + +.+.+..-++ ...+|.++|+-..+-..
T Consensus 321 ~pksPHGv~vsP--DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP-lHt~Fd~~G~aYTtlfi 397 (638)
T 3sbq_A 321 VPKNPHGCNTSS--DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP-LHTTFDGRGNAYTTLFI 397 (638)
T ss_dssp ESSSCCCEEECT--TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE-EEEEECSSSEEEEEETT
T ss_pred CCCCCcceeeCC--CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc-cEEEECCCCceEeeeee
Confidence 445566777887 56666554 468899999987320 1 1 2233334344 45699999955557778
Q ss_pred CCcEEEEECCCC----------eEEEEEcceecceEEEEE-----ECCCCCEEEEe
Q 020454 279 SGDLASVDIRTG----------KLLGCFIGKCSGSIRSIA-----RHPTLPIIASC 319 (326)
Q Consensus 279 dg~v~iwd~~~~----------~~~~~~~~~~~~~v~~l~-----~~p~~~~l~s~ 319 (326)
|..|.-|++... ..+.++.-| ..+-...+ -.|+|++|++.
T Consensus 398 dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~-YqpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 398 DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH-YQPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp TTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-SCEEEEEETTTTSTTCCSCEEEEE
T ss_pred cceEEEEeccHHHHHhcCccCCeeeeccccc-cCCcccccCCCccCCCCccEEEEe
Confidence 999999999753 456666654 33322221 24788888876
No 338
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=86.31 E-value=11 Score=29.95 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=56.3
Q ss_pred CCCEEEEecCC-----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----CeEEEE
Q 020454 173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLY 242 (326)
Q Consensus 173 ~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~v~iw 242 (326)
++++++.|+.+ ..+.+||+.+.+-... ...+ .+..-.++... ++++++.|+.+ ..+.+|
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-TAMN-------TIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-CCCS-------SCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC-CCCC-------CccccceEEEE---CCEEEEEeCCCCCCccceEEEE
Confidence 56777777765 4588999877643222 1111 11111122222 45577777654 568999
Q ss_pred eCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeEE
Q 020454 243 DTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLL 293 (326)
Q Consensus 243 d~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~~ 293 (326)
|+.+. + -..+. ........+.+ +++.++.|+.+ ..+.+||+.+.+..
T Consensus 237 d~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 237 DVETE-T-WTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp ETTTT-E-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred eCCCC-c-EEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 98764 1 11111 11111222222 56667777654 35788998876543
No 339
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.30 E-value=6.1 Score=37.49 Aligned_cols=38 Identities=11% Similarity=-0.023 Sum_probs=32.4
Q ss_pred ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46677777888899999999999999999998877643
No 340
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=85.11 E-value=23 Score=32.48 Aligned_cols=210 Identities=14% Similarity=0.127 Sum_probs=110.0
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~ 146 (326)
+|..|..+| +..||-.+ . ..+.... ......|.++... .++.|..++.+| +..||.......
T Consensus 34 ~lWigT~~G-L~ryDG~~--~-~~~~~~~----~~~~~~i~~i~~d---------~~g~lWigT~~G-l~~yd~~~~~f~ 95 (758)
T 3ott_A 34 LIWIGSNKG-LFSYDGYS--T-QQHFTYG----ENNNTRIYCGVII---------DNTYLYMGTDNG-ILVYNYRADRYE 95 (758)
T ss_dssp CEEEEESSC-EEEECSSC--E-EECSCTT----STTSSCEEEEEEE---------TTTEEEEEETTE-EEEEETTTTEEC
T ss_pred CEEEEECCC-ccccCCCc--e-EEEEccC----CCCCceEEEEEEc---------CCCcEEEEeCCC-eEEEeCCCCEEE
Confidence 588888877 55666422 1 1111100 0122456665432 345787887665 678886543211
Q ss_pred cccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (326)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 226 (326)
. . .......|.++... ++ .|..++.+ .|..||..+.+... ..... . .+ ....|.++.... +
T Consensus 96 ~-~--------~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~~-~~~~~-~--~l-~~~~i~~i~~d~--~ 156 (758)
T 3ott_A 96 Q-P--------ETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLTS-FDTRR-N--GL-PNNTIYSIIRTK--D 156 (758)
T ss_dssp C-C--------SCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEEE-ECHHH-H--CC-SCSCEEEEEECT--T
T ss_pred C-c--------ccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEEE-eccCC-C--Cc-CCCeEEEEEEcC--C
Confidence 0 0 00012346666543 44 45555555 78889987654322 10000 0 00 112355555432 4
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCceeEEeec------CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEccee
Q 020454 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC 300 (326)
Q Consensus 227 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~ 300 (326)
+ .|..++.+ -+..||.... . ...+... ...|.++...+++..|..|+. +-+..+|..+++........
T Consensus 157 g-~lWigt~~-Gl~~~~~~~~-~-~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~- 230 (758)
T 3ott_A 157 N-QIYVGTYN-GLCRYIPSNG-K-FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH- 230 (758)
T ss_dssp C-CEEEEETT-EEEEEETTTT-E-EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE-
T ss_pred C-CEEEEeCC-CHhhCccCCC-c-eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC-
Confidence 5 44556654 4777887654 2 2222211 224788888777776666764 46888998877543221112
Q ss_pred cceEEEEEECCCCCEEEEe
Q 020454 301 SGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 301 ~~~v~~l~~~p~~~~l~s~ 319 (326)
...|.+|....++.+.+..
T Consensus 231 ~~~i~~i~~d~~g~lWigT 249 (758)
T 3ott_A 231 NNSIKSLALDGNGDLLAGT 249 (758)
T ss_dssp EEEEEEEEECTTCCEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEe
Confidence 4568899888877655543
No 341
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=84.33 E-value=4.7 Score=35.78 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=44.0
Q ss_pred eEEEEecCCCCeEEEEcCC------------CcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454 261 IKAVAEEPDSFNIYIGNGS------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 261 i~~v~~s~~~~~l~~g~~d------------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
.-.|+|+|+|+++++-+.+ ..+.+.+..++++..-+.++....++.++|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3568999999877654432 2466667777887766666656789999999999988764
No 342
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.46 E-value=17 Score=29.56 Aligned_cols=204 Identities=9% Similarity=0.037 Sum_probs=109.4
Q ss_pred CCeEEEEecCCcEEEEeccccce-------eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEE
Q 020454 65 DPLLAVARKNGLTDILNPLNGDL-------RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM 137 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i 137 (326)
++.+++-+.+|.|+--.+.+-+. ...+.. .+.+.+..+...+ ....++..+..|.++-
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~-------ke~D~~~~~~~~~--------t~d~ll~fT~~Gr~y~ 67 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGL-------KQDDIVAHFFVCS--------THDLILFFTTQGRVYR 67 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCC-------CGGGCEEEEEEEE--------TTSEEEEEETTSEEEE
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCcccccc-------CCCCEEEEEEEeC--------CCCEEEEEeCCCeEEE
Confidence 44688899999999776532111 111111 2223444444333 4567888889998776
Q ss_pred EEccccccccccccceE--EEEEccCCCceEEEEEcC---CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454 138 RSIEVTKVSAESSCSTV--KSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (326)
Q Consensus 138 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~---~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (326)
.....-....-...|.. .+..+...+.|..+-.-+ +..+++..+.+|.++--.+..-+.... .+ .....+..
T Consensus 68 ~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r-~G--~~~i~lke 144 (327)
T 3uc1_A 68 AKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS-GG--IVAVNLRD 144 (327)
T ss_dssp EEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS-SC--EESCBCCT
T ss_pred EEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc-Cc--eEEEEECC
Confidence 65443221111111210 112334455666554433 467888999999999888764221111 00 00111212
Q ss_pred CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC--CC---CCc---eeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEE
Q 020454 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS--AQ---RRP---VMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (326)
Q Consensus 213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~--~~---~~~---~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~ 283 (326)
...+..+.... ....++..+..|.+..+... .- .+. +.-+. .....|.++...+.+.+++..+..|.++
T Consensus 145 ~D~lv~~~~~~--~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~K 222 (327)
T 3uc1_A 145 NDELVGAVLCS--AGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAK 222 (327)
T ss_dssp TCCEEEEEEEC--TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEE
T ss_pred CCEEEEEEEec--CCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEE
Confidence 23344443333 23378888889988877665 21 111 11111 1234566666656667899999999999
Q ss_pred EEECC
Q 020454 284 SVDIR 288 (326)
Q Consensus 284 iwd~~ 288 (326)
.-.+.
T Consensus 223 rt~l~ 227 (327)
T 3uc1_A 223 RTAIE 227 (327)
T ss_dssp EEEGG
T ss_pred EEEHH
Confidence 88764
No 343
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.79 E-value=33 Score=33.39 Aligned_cols=38 Identities=11% Similarity=-0.023 Sum_probs=31.2
Q ss_pred ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34455666788899999999999999999999887654
No 344
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=81.60 E-value=19 Score=28.89 Aligned_cols=204 Identities=9% Similarity=0.029 Sum_probs=106.8
Q ss_pred CCeEEEEecCCcEEEEeccccceee-------eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEE
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRV-------AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM 137 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i 137 (326)
++++++.+.+|.|+--.+.+-+... .+.. .+.+.+..+...+ ....++..+..|.++-
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~-------ke~D~l~~~~~~~--------~~~~ll~fT~~G~~~~ 67 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARI-------KEEDFIDRLLVAN--------THDHILCFSSRGRVYS 67 (307)
T ss_dssp CEEEEEEETTSEEEEEECC---------------------------CCEEEEEEEE--------TTCEEEEEETTSEEEE
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeee-------CCCCEEEEEEEEC--------CCCEEEEEECCCEEEE
Confidence 4468889999999887664322111 1111 1224444443333 4567889999999777
Q ss_pred EEccccccccccccceE--EEEEccCCCceEEEEEc---CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454 138 RSIEVTKVSAESSCSTV--KSWNVCASGTIAFSKVD---ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (326)
Q Consensus 138 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~---~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (326)
.....-........|.. ....+...+.|..+..- .++.+++..+.+|.++--.+..-..... .+ .....+..
T Consensus 68 ~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r-~G--~~~i~l~~ 144 (307)
T 1zi0_A 68 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT-AG--KVAIKLVD 144 (307)
T ss_dssp EEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT-TC--EESSCCCT
T ss_pred EEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc-CC--eEEEEECC
Confidence 76554322211122221 12234445566666442 2456778889999999887653211110 00 00011111
Q ss_pred CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC---CCC---ceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEE
Q 020454 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA---QRR---PVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASV 285 (326)
Q Consensus 213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~---~~~---~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iw 285 (326)
...+-.+.... +...++..+.+|.+..++... ..+ -+.-+.. ....|..+...+++..+++.+..|.++-.
T Consensus 145 ~d~lv~~~~~~--~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~ 222 (307)
T 1zi0_A 145 GDELIGVDLTS--GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRT 222 (307)
T ss_dssp TCCEEEEEEEC--TTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeC--CCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEE
Confidence 12233333332 233678888899888887532 111 1222222 23456666655556678888999999988
Q ss_pred ECC
Q 020454 286 DIR 288 (326)
Q Consensus 286 d~~ 288 (326)
++.
T Consensus 223 ~~~ 225 (307)
T 1zi0_A 223 AVA 225 (307)
T ss_dssp CGG
T ss_pred EHH
Confidence 774
No 345
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=80.58 E-value=9.2 Score=33.71 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=42.9
Q ss_pred ceEEEEecCCCCeEEEEcC------------CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454 260 PIKAVAEEPDSFNIYIGNG------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (326)
Q Consensus 260 ~i~~v~~s~~~~~l~~g~~------------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~ 319 (326)
....|.|+++|.+.++.+. ...|..++..++++...+.+.....++.++|+||++.|+.+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 3567899999987774332 12577778778877655554324579999999999988765
No 346
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=80.21 E-value=20 Score=28.44 Aligned_cols=108 Identities=20% Similarity=0.206 Sum_probs=56.8
Q ss_pred CCCEEEEecC-C-----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-----eEEE
Q 020454 173 SEKFSLFGGK-G-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRL 241 (326)
Q Consensus 173 ~~~~l~sg~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-----~v~i 241 (326)
++++++.|+. + ..+.+||+.+.+-... ...+ .+..-.++... ++++++.|+.++ .+.+
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL-APMQ-------TARSLFGATVH---DGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEEC-CCCS-------SCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEEC-CCCC-------CchhceEEEEE---CCEEEEEeccCCCCccceEEE
Confidence 5677778876 2 4688999887643221 1111 11111122222 455777776544 5888
Q ss_pred EeCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCC--------------CcEEEEECCCCeEEEE
Q 020454 242 YDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS--------------GDLASVDIRTGKLLGC 295 (326)
Q Consensus 242 wd~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~d--------------g~v~iwd~~~~~~~~~ 295 (326)
||+.+. + -..+. ........+.+ +++.++.|+.+ ..+.+||+.+.+....
T Consensus 217 yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 217 YSITDN-K-WAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EECCCC-e-EEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 998764 2 12221 11111222233 56666677653 2477899888765443
No 347
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.73 E-value=46 Score=31.63 Aligned_cols=38 Identities=16% Similarity=0.022 Sum_probs=32.5
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (326)
Q Consensus 164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 201 (326)
.+.++...++..++++-+.|+++|+|++.+++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777888888999999999999999999998877643
No 348
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=78.51 E-value=26 Score=28.68 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=43.3
Q ss_pred ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE----EEEEcceecceEEEEEECCCCCEEEEe-ccCc
Q 020454 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASC-GFLE 323 (326)
Q Consensus 250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~----~~~~~~~~~~~v~~l~~~p~~~~l~s~-s~D~ 323 (326)
|+..+..+......++|. +|..+...-..+.|....+..+.. ..-+.+. .+++..|+..|+|.++++. ..||
T Consensus 254 P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~-~gR~~dv~~~pDG~lyv~td~~~g 330 (347)
T 3das_A 254 PVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE-YGRLRTVAPAGGDKLWLVTSNTDG 330 (347)
T ss_dssp CSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT-SSCEEEEEEEETTEEEEEECTTSS
T ss_pred CcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCC-CCCccEEEECCCCcEEEEEcCCCC
Confidence 344443332355677775 465566666666777777765542 1223343 5789999999999866654 3443
No 349
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=78.41 E-value=28 Score=28.91 Aligned_cols=162 Identities=12% Similarity=0.000 Sum_probs=80.6
Q ss_pred CceEEEEecCCcEEEEEcccccccccc-ccc--eEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeee
Q 020454 123 SRTLLTCTTKGKASMRSIEVTKVSAES-SCS--TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (326)
Q Consensus 123 ~~~l~~~~~~g~v~i~~~~~~~~~~~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 199 (326)
....++...+|.|+.|-.+.....-.. ... .......-....+..++++......+.-..|+.|..|-....-.+-.
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 346677789999999986654321111 111 11111111223455566766555555557899999997543110000
Q ss_pred ecCC---CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-------ceeE---E-eecCCceEEEE
Q 020454 200 AKPP---PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-------PVMS---F-DFRETPIKAVA 265 (326)
Q Consensus 200 ~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-------~~~~---~-~~~~~~i~~v~ 265 (326)
-... ............|..++.- ..+.+....+|.|+.|-.....+ .... + ......|..++
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G----~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia 217 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAG----GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIA 217 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEEC----SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred CCCccCcCCeEecccCCCeEEEEEeC----cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEE
Confidence 0000 0000000011234455442 22566677899999997542111 0111 1 11234566666
Q ss_pred ecCCCCeEEEEcCCCcEEEEECC
Q 020454 266 EEPDSFNIYIGNGSGDLASVDIR 288 (326)
Q Consensus 266 ~s~~~~~l~~g~~dg~v~iwd~~ 288 (326)
......+.++-..+|.|+.|-..
T Consensus 218 ~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 218 CGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp ECCSSCEEEEEETTTEEEEEECC
T ss_pred EcCCCcEEEEEccCCEEEEEeCC
Confidence 54333566666889999999643
No 350
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=76.10 E-value=18 Score=31.93 Aligned_cols=123 Identities=14% Similarity=0.072 Sum_probs=70.2
Q ss_pred eEEEEEcCCCCEEEEec-CCCeEEEEECCCceeeeeecC-CCCCC--CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454 165 IAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKP-PPKNS--LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (326)
Q Consensus 165 v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~-~~~~~--~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~ 240 (326)
...+.++|+|++++.++ .+.++.++|+++-...+.-+- ..... ......-.....+|.+ +|+-..+.--|.+|.
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~--~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG--RGNAYTTLFIDSQVV 402 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS--SSEEEEEETTTTEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC--CCceEeeeeecceEE
Confidence 44788899998886655 578899999985322111000 00000 0011112345667876 565556667899999
Q ss_pred EEeCCCC------C---CceeEEeecCCceEEEEe------cCCCCeEEEEc---CCCcE----------EEEECCCC
Q 020454 241 LYDTSAQ------R---RPVMSFDFRETPIKAVAE------EPDSFNIYIGN---GSGDL----------ASVDIRTG 290 (326)
Q Consensus 241 iwd~~~~------~---~~~~~~~~~~~~i~~v~~------s~~~~~l~~g~---~dg~v----------~iwd~~~~ 290 (326)
-|++... + ..+..+..|..+ -.+.- .|+|++|++.. .|+.+ .++|+...
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGd 479 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGD 479 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCC
Confidence 9997632 1 234455555332 22222 47899998874 34433 67777643
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=75.75 E-value=30 Score=31.43 Aligned_cols=107 Identities=16% Similarity=0.237 Sum_probs=58.3
Q ss_pred CCCEEEEecCCC------eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC--eEEEEeC
Q 020454 173 SEKFSLFGGKGV------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QVRLYDT 244 (326)
Q Consensus 173 ~~~~l~sg~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg--~v~iwd~ 244 (326)
++++++.||.++ .+.+||..+.+-... .. +..+..-.+.+... ++++++.|+.++ .+.+||+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~-~~-------~p~~R~~h~~~~~~--~~~iyv~GG~~~~~~v~~yd~ 520 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMI-KS-------LSHTRFRHSACSLP--DGNVLILGGVTEGPAMLLYNV 520 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEEC-CC-------CSBCCBSCEEEECT--TSCEEEECCBCSSCSEEEEET
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEEC-CC-------CCCCcccceEEEEc--CCEEEEECCCCCCCCEEEEEC
Confidence 667778887543 478888877543221 11 11111112222222 455777776554 6899998
Q ss_pred CCCCCceeEEe------ecCCceEEEEecCC-CCeEEEEcC--C-----CcEEEEECCCCe
Q 020454 245 SAQRRPVMSFD------FRETPIKAVAEEPD-SFNIYIGNG--S-----GDLASVDIRTGK 291 (326)
Q Consensus 245 ~~~~~~~~~~~------~~~~~i~~v~~s~~-~~~l~~g~~--d-----g~v~iwd~~~~~ 291 (326)
.+. . -..+. ........+.+..+ ++.++.|+. + +.+.+||+.+.+
T Consensus 521 ~t~-~-W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 521 TEE-I-FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTT-E-EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCC-c-eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 864 1 11111 11122233555555 556667765 2 458999998876
No 352
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=74.40 E-value=33 Score=27.77 Aligned_cols=57 Identities=7% Similarity=-0.039 Sum_probs=28.3
Q ss_pred eEEEEeCCCCCC-ceeEEeecCCceEEEEecCCCCeEEEEcCCC------cEEEEECCCCeEEEEE
Q 020454 238 QVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG------DLASVDIRTGKLLGCF 296 (326)
Q Consensus 238 ~v~iwd~~~~~~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg------~v~iwd~~~~~~~~~~ 296 (326)
.+.+||+.+..- .+..+......-.++. .+++.++.|+.++ .|.++++++++.+...
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 577899885421 1112211111222222 3677777777543 4666788887766543
No 353
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.23 E-value=67 Score=31.25 Aligned_cols=37 Identities=14% Similarity=-0.000 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454 165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (326)
Q Consensus 165 v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 201 (326)
+.++...++..++++-+.|+++|||++.+++++....
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4455566778899999999999999999998877643
No 354
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=72.75 E-value=39 Score=27.92 Aligned_cols=206 Identities=13% Similarity=0.090 Sum_probs=109.0
Q ss_pred CCCeEEEEecCCcEEEEeccccc-------eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEE
Q 020454 64 NDPLLAVARKNGLTDILNPLNGD-------LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKAS 136 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~ 136 (326)
+.+++++.+.+|.|+--.+..-+ -+..+.. .+.+.+..+...+ ....++..+..|.++
T Consensus 6 ~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~l-------ke~D~l~~~~~~~--------t~d~ll~fT~~G~~~ 70 (370)
T 3l6v_A 6 PEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAST-------KEEDFIDQLWLVN--------THDTLLTFTSSGKVF 70 (370)
T ss_dssp CCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEEC-------SCCCCEEEEEEEC--------TTCEEEEEETTSEEE
T ss_pred CCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceeccc-------CCCCEEEEEEEec--------CCCEEEEEeCCCeEE
Confidence 44578999999999987653211 1122222 2334555444433 446788889999987
Q ss_pred EEEccccccccccccce--EEEEEccCCCceEEEEEcC---CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454 137 MRSIEVTKVSAESSCST--VKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (326)
Q Consensus 137 i~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~---~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (326)
-+....-....-...|. +.+..+.....|..+..-. ++.+|+..+..|.++...+..-..... .......+.
T Consensus 71 ~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~---~G~~ai~L~ 147 (370)
T 3l6v_A 71 WLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLA---RGKIAINLD 147 (370)
T ss_dssp EEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCT---TCEESSCCC
T ss_pred EEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccC---CceEEEEeC
Confidence 66654322111111121 1222344456666654432 356888899999999888653221110 000011121
Q ss_pred CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC---CCC---ceeEEee-cCCceEEEEecC----------------
Q 020454 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA---QRR---PVMSFDF-RETPIKAVAEEP---------------- 268 (326)
Q Consensus 212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~---~~~---~~~~~~~-~~~~i~~v~~s~---------------- 268 (326)
....+-.+.... +...++..+.+|.+..++... ..+ -+.-+.. ....|.++...+
T Consensus 148 ~~d~lv~v~~~~--~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~ 225 (370)
T 3l6v_A 148 EGDALVGVALTD--GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEE 225 (370)
T ss_dssp TTCCEEEEEEEC--SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC--------------
T ss_pred CCCEEEEEEEeC--CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccc
Confidence 122333333332 333678888899888887432 111 1222221 223444444333
Q ss_pred -------------------CCCeEEEEcCCCcEEEEECCC
Q 020454 269 -------------------DSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 269 -------------------~~~~l~~g~~dg~v~iwd~~~ 289 (326)
.+..|++.+..|..+...+..
T Consensus 226 ~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 226 VVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp ---------------------CEEEEEETTSEEEEEEGGG
T ss_pred cccccccccccccccccccCCceEEEeeCCCCEEEEEHHH
Confidence 456888999999999888753
No 355
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=72.64 E-value=58 Score=29.80 Aligned_cols=208 Identities=15% Similarity=0.080 Sum_probs=112.6
Q ss_pred eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (326)
Q Consensus 67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~ 146 (326)
.|.+|+.+| +..||..++++..... .....|..+.. .++.+..++.+ .+..++.....
T Consensus 75 ~lWigT~~G-l~~yd~~~~~f~~~~~--------~~~~~i~~i~~----------~~g~lWigt~~-Gl~~~~~~~~~-- 132 (758)
T 3ott_A 75 YLYMGTDNG-ILVYNYRADRYEQPET--------DFPTDVRTMAL----------QGDTLWLGALN-GLYTYQLQSRK-- 132 (758)
T ss_dssp EEEEEETTE-EEEEETTTTEECCCSC--------CCCSCEEEEEE----------ETTEEEEEETT-EEEEEETTTCC--
T ss_pred cEEEEeCCC-eEEEeCCCCEEECccc--------CCCceEEEEEe----------cCCcEEEEcCC-cceeEeCCCCe--
Confidence 588888766 7889987765533110 11134554432 23567777766 56777754321
Q ss_pred cccccceEEEEEc----cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454 147 AESSCSTVKSWNV----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (326)
Q Consensus 147 ~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (326)
+..+.. .....|.++....++++.+ |+. +-|..+|..+.+.... ....... + ....|.++...
T Consensus 133 -------~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~~-~~~~~~~--~-~~~~i~~i~~d 199 (758)
T 3ott_A 133 -------LTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKFEGI-PLPVHSS--Q-SNLFVNSLLED 199 (758)
T ss_dssp -------EEEECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEEEEE-CCCCCTT--C-SSCCEEEEEEE
T ss_pred -------EEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCceEEe-cCCCccc--c-ccceeEEEEEE
Confidence 222210 1134688888887777654 444 4577888776553221 1111000 0 11236666554
Q ss_pred ecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce--
Q 020454 223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-- 299 (326)
Q Consensus 223 p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-- 299 (326)
. ++..|..++. +-+..+|..+. + +..+. .....|.++....+|.+. .|+.+ -+.+++..+++... +...
T Consensus 200 ~--~~~~lWigt~-~Gl~~~~~~~~-~-~~~~~~l~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~~~-~~~~~~ 271 (758)
T 3ott_A 200 T--TRQCVWIGTE-GYLFQYFPSTG-Q-IKQTEAFHNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPLQH-IIHDSR 271 (758)
T ss_dssp T--TTTEEEEEEE-EEEEEEETTTT-E-EEEEEEEEEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCCEE-ECCCTT
T ss_pred C--CCCEEEEEEC-CCCeEEcCCCC-e-EEeccCCCCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcEEE-EEcCCC
Confidence 3 3345555663 45888897754 2 22221 223458888887777554 45544 58888887664432 2210
Q ss_pred -----ecceEEEEEECCCCCEEE
Q 020454 300 -----CSGSIRSIARHPTLPIIA 317 (326)
Q Consensus 300 -----~~~~v~~l~~~p~~~~l~ 317 (326)
....|.+|....++.+-+
T Consensus 272 ~~~~l~~~~i~~i~~D~~g~lWi 294 (758)
T 3ott_A 272 NIQSLTNNIIWNIFADQEHNIWL 294 (758)
T ss_dssp CTTSCSCSCEEEEEECTTCCEEE
T ss_pred CcCcCCcCeEEEEEEcCCCCEEE
Confidence 023588888887775433
No 356
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=71.99 E-value=35 Score=27.06 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=56.6
Q ss_pred CCCEEEEecCC------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----CeEEE
Q 020454 173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRL 241 (326)
Q Consensus 173 ~~~~l~sg~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~v~i 241 (326)
++++++.|+.+ +.+.+||+.+.+-... ...+ .+..-.++... ++++++.|+.+ ..+.+
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~ 226 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL-APMK-------TPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEA 226 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEE-CCCS-------SCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC-CCCC-------CCcccceEEEE---CCEEEEEcCcCCCCccceEEE
Confidence 56777777742 4588999887653222 1111 11111122222 45577777543 35778
Q ss_pred EeCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCC--------------CcEEEEECCCCeEEEE
Q 020454 242 YDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS--------------GDLASVDIRTGKLLGC 295 (326)
Q Consensus 242 wd~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~d--------------g~v~iwd~~~~~~~~~ 295 (326)
||+.+. + -..+. ........+.+ +++.++.|+.+ ..+.+||+.+.+....
T Consensus 227 yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 227 FDLKTN-K-WEVMTEFPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EETTTC-C-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EECCCC-e-EEECCCCCCcccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 998765 2 11111 11111122222 56666676653 4588999988765544
No 357
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=70.77 E-value=35 Score=26.48 Aligned_cols=151 Identities=9% Similarity=0.061 Sum_probs=82.8
Q ss_pred CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc
Q 020454 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (326)
Q Consensus 66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~ 145 (326)
+.+++.+.+|.|+--....-. ...+.. ...+.+..+.... ....++..+..|.++-.....-..
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~-~~~~~l-------ke~D~l~~~~~~~--------t~~~ll~~T~~Gr~~~~~~~elp~ 66 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDID-APGLNY-------KAGDSFKAAVKGK--------SNQPVVFVDSTGRSYAIDPITLPS 66 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCC-STTSCC-------CTTCCEEEEEEEE--------TTSCEEEEETTSEEEEECGGGSCC
T ss_pred CEEEEEeCCCEEEEeeCCcCC-ceeccC-------CCCCEEEEEEEeC--------CCCEEEEEeCCCeEEEEEHHHCCC
Confidence 346778888988876542211 111111 2334555444333 445788899999977666544211
Q ss_pred ccccccce-E-EEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCc-------eeeeeecCCCCCCCCcCCCCce
Q 020454 146 SAESSCST-V-KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-------EKIWTAKPPPKNSLGIFTPTWF 216 (326)
Q Consensus 146 ~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~v 216 (326)
+...+. + ...++.....|..+-...++.+|+..+..|.++...+..- .....++ ....+
T Consensus 67 --~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~----------~~d~l 134 (256)
T 1zvt_A 67 --ARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP----------ENAHV 134 (256)
T ss_dssp --SSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCC----------TTCCB
T ss_pred --cCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEEC----------CCCEE
Confidence 111121 1 1233455667777755345667778899999999887532 1111221 11122
Q ss_pred eeeEEeecCCCcEEEEEeCCCeEEEEeCC
Q 020454 217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (326)
Q Consensus 217 ~~~~~~p~~~~~~l~~~~~dg~v~iwd~~ 245 (326)
-.+...+. +...++..+.+|.+..+...
T Consensus 135 v~~~~~~~-~~~~i~l~T~~G~~lrf~~~ 162 (256)
T 1zvt_A 135 MPPVVIED-ASDMLLAITQAGRMLMFPVS 162 (256)
T ss_dssp CCCEECCC-TTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEecC-CCCEEEEEcCCCeEEEEEHH
Confidence 23333211 23378888899999888754
No 358
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=69.66 E-value=39 Score=26.56 Aligned_cols=114 Identities=16% Similarity=0.079 Sum_probs=72.0
Q ss_pred CCCeEEEEecCCcEEEEeccccc----eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454 64 NDPLLAVARKNGLTDILNPLNGD----LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~ 139 (326)
++++++..+.+|.|+-..+.+-. -+..+.. .+.+.+..+...+ ....++..+..|.+..+.
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~l-------kegD~l~~~~~~~--------~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKL-------TEGDEVVSIASSV--------DETHILLFTKKGRVARFS 143 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCC-------CTTCCEEEEEECC--------SSCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEec-------CCCCEEEEEEEeC--------CCCEEEEEECCCEEEEEE
Confidence 45689999999999999875422 0011111 2234555444333 345799999999988887
Q ss_pred ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC
Q 020454 140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK 193 (326)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 193 (326)
...-... +....-++..++.....|..+...+++..++..+..|.++...+..
T Consensus 144 ~~eip~~-gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 144 VREVPPS-TPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp GGGSCBC-CTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred hhhCCCc-CCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 6653321 2222223345666667777776666667788888999988887653
No 359
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=69.35 E-value=98 Score=31.12 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=44.7
Q ss_pred eeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454 217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (326)
Q Consensus 217 ~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~ 291 (326)
-++..++. .| .+...+.-|.+++||+.++ .++..-+.....|...+.+....-+++-...|.|.--.+....
T Consensus 262 v~~~vs~k-~g-~iy~itk~G~~~~~d~~t~-~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 262 VAMQISEK-HD-VVFLITKYGYIHLYDLETG-TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred eEEEeccc-cC-EEEEEecCceEEEEecccc-hhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 34555553 33 7888899999999999988 5555544455555555544444444444566666655555433
No 360
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=65.21 E-value=2.3 Score=19.14 Aligned_cols=14 Identities=43% Similarity=0.992 Sum_probs=11.0
Q ss_pred cccccCCCCCCCee
Q 020454 3 RTTTLECPGCPPLR 16 (326)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (326)
+++|+..||||-++
T Consensus 8 psytfrgpgcptlk 21 (29)
T 1ic9_A 8 PSYTFRGPGCPTLK 21 (29)
T ss_dssp TTEEEECSCCCCCC
T ss_pred cceeecCCCCCccc
Confidence 46788999999855
No 361
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=63.84 E-value=14 Score=33.54 Aligned_cols=36 Identities=11% Similarity=-0.012 Sum_probs=29.4
Q ss_pred ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (326)
Q Consensus 260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~ 297 (326)
.|.++.+ +..++++-+.|.++|+|++++++++....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4555555 47799999999999999999999887654
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=62.17 E-value=59 Score=26.02 Aligned_cols=205 Identities=13% Similarity=0.132 Sum_probs=108.8
Q ss_pred CCeEEEEecCCcEEEEeccccceee-------eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEE
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRV-------AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM 137 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i 137 (326)
++++++.+.+|.|+-..+..-+... .+.. .+.+.+..+.... ....++..+..|.++-
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~l-------ke~D~l~~~~~~~--------~~~~ll~~T~~G~~~~ 72 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL-------NDGDEIVIALCVN--------THDYLFMISNEGKLYL 72 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCC-------CTTCCEEEEEEEE--------TTCEEEEEETTSEEEE
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceeccc-------CCCCEEEEEEEEC--------CCCEEEEEECCCeEEE
Confidence 4468889999999988764322111 1111 2224454444333 4467888899999877
Q ss_pred EEccccccccccccce--EEEEEccCCCceEEEEEcC---CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454 138 RSIEVTKVSAESSCST--VKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (326)
Q Consensus 138 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~---~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (326)
.....-....-...|. .....+..++.|..+..-+ +..+|+..+..|.++...+..-.... -.+ .....+..
T Consensus 73 ~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r-~~G--~~~i~L~~ 149 (312)
T 1suu_A 73 INAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK-SRG--VIVIKLND 149 (312)
T ss_dssp EEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-----C--EECBCCCT
T ss_pred EEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC-CCc--EEEEecCC
Confidence 7654322110011111 0011233345555554332 35677788999999888875321110 000 00111222
Q ss_pred CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC---CCC---ceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEE
Q 020454 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA---QRR---PVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASV 285 (326)
Q Consensus 213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~---~~~---~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iw 285 (326)
...+-.+.... +...++..+.+|.+..+.... ..+ -+.-+.. ....|..+..-.++..+++.+..|..+..
T Consensus 150 ~d~lv~~~~~~--~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~ 227 (312)
T 1suu_A 150 KDFVTSAEIVF--KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRL 227 (312)
T ss_dssp TCCEEEEEEEC--TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeC--CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEE
Confidence 23344444432 334788888999998887542 111 1222222 23456666555556678888999999999
Q ss_pred ECCC
Q 020454 286 DIRT 289 (326)
Q Consensus 286 d~~~ 289 (326)
++..
T Consensus 228 ~~~e 231 (312)
T 1suu_A 228 NMSK 231 (312)
T ss_dssp EGGG
T ss_pred EHHH
Confidence 8753
No 363
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=60.64 E-value=80 Score=27.03 Aligned_cols=72 Identities=15% Similarity=0.055 Sum_probs=49.9
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~ 290 (326)
.-++..++. .+ .+...+.-|.+++||+.++ .++..-+.....|..-+.+....-++.-...|.|.--.+...
T Consensus 261 Pvamqvs~k-yg-viyviTK~G~i~lyDleTg-t~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 261 PVAMQISEK-HD-VVFLITKYGYIHLYDLETG-TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEEEETT-TT-EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred eeEEEeccc-CC-EEEEEecCceEEEEecccc-eeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 446666664 33 8888999999999999998 667666666666766566555555665567777666655543
No 364
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=56.29 E-value=34 Score=30.01 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=44.5
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC---ceeEEee--cCCceE-EEEecCCCCeEEEEcCCCcEEE
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDF--RETPIK-AVAEEPDSFNIYIGNGSGDLAS 284 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~--~~~~i~-~v~~s~~~~~l~~g~~dg~v~i 284 (326)
.++++.....+...++.|+.+|.|.-.-+..... ...++.. ...+|. .|.++++..+|++++.++.++|
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 4555555544445788899999876655442211 1223332 246785 8999999999999988866555
No 365
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=55.60 E-value=76 Score=25.21 Aligned_cols=124 Identities=5% Similarity=-0.098 Sum_probs=65.2
Q ss_pred EEcCCCCEEEEecCC--------------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe
Q 020454 169 KVDISEKFSLFGGKG--------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (326)
Q Consensus 169 ~~~~~~~~l~sg~~d--------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~ 234 (326)
-+++++++|+-.... ..|+..++...+....... .+..|+|. ++.|+-..
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~--------------~~~~~s~~--g~~Iy~~~ 122 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD--------------PCIYASLI--GNYIYYLH 122 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS--------------CEEEEEEE--TTEEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC--------------CccEEEEe--CCEEEEEe
Confidence 345677777655432 3566677665543222111 12356663 33555443
Q ss_pred ----CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-CCcEEEEECCCCeEEEEEcceecceEEEEEE
Q 020454 235 ----NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (326)
Q Consensus 235 ----~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~ 309 (326)
.+..|+..++... . ...+..+.. .+++++++.|+-.+. ...|...++..+.....+.+. .. ..+
T Consensus 123 ~~~~~~~~Iy~~~~dGs-~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~----~~-~~~ 191 (302)
T 3s25_A 123 YDTQTATSLYRIRIDGE-E-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN----CY-KPV 191 (302)
T ss_dssp ESSSSCEEEEEEETTSC-C-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSC----EE-EEE
T ss_pred ecCCCCceEEEEECCCC-C-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCC----cc-cee
Confidence 3445666666633 2 344433322 456788888884444 678998898776544333332 11 224
Q ss_pred CCCCCEEEEe
Q 020454 310 HPTLPIIASC 319 (326)
Q Consensus 310 ~p~~~~l~s~ 319 (326)
+|++.+|+-.
T Consensus 192 ~P~g~~iy~t 201 (302)
T 3s25_A 192 VLDDTNVYYM 201 (302)
T ss_dssp EEETTEEEEE
T ss_pred eecCCEEEEE
Confidence 4666655533
No 366
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=55.01 E-value=66 Score=27.86 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=43.2
Q ss_pred eeeeEEeec----CCCcEEEEEeCCCeEEEEeCC-CC------CCceeEEee--cCCceEEEEecCCCCeEEEEcCCCcE
Q 020454 216 FTSAAFLSI----DDHRKFVAGTNDHQVRLYDTS-AQ------RRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDL 282 (326)
Q Consensus 216 v~~~~~~p~----~~~~~l~~~~~dg~v~iwd~~-~~------~~~~~~~~~--~~~~i~~v~~s~~~~~l~~g~~dg~v 282 (326)
.++|+...- .+...++.|+.+|.|+-.-+. .. ...+.++.. ...+|..|.++++..+|++++.++.+
T Consensus 406 lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~ 485 (495)
T 1q47_A 406 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA 485 (495)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred eEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEE
Confidence 355555432 223367789999976544332 21 112334443 35789999999999999999988766
Q ss_pred EE
Q 020454 283 AS 284 (326)
Q Consensus 283 ~i 284 (326)
+|
T Consensus 486 ~v 487 (495)
T 1q47_A 486 QL 487 (495)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 367
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=52.42 E-value=26 Score=31.93 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecC
Q 020454 165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (326)
Q Consensus 165 v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 202 (326)
|.++.+. ..++++-+.|.++|+||+.+++++....-
T Consensus 224 Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 5555553 68999999999999999999987766443
No 368
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=48.73 E-value=1e+02 Score=24.77 Aligned_cols=255 Identities=12% Similarity=0.068 Sum_probs=125.7
Q ss_pred eeeeeecCcccEEEEEecCCc-CCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc---cccee--
Q 020454 15 LRALTFDSLGLIKVIEARGEH-GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL---NGDLR-- 88 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~---~~~~~-- 88 (326)
--+++.+.+|.||--..+.-. .+...+ ... +...+..+..... ...|+..+..|.+.-+... .....
T Consensus 6 ~~~v~lT~~G~IKr~~~~~~~~~~~~~~--~lk---e~D~l~~~~~~~t--~d~ll~fT~~Gr~~~~~~~elp~~~r~a~ 78 (323)
T 1wp5_A 6 DVIVTVTKDGYVKRTSLRSYAASNGQDF--AMK---DTDRLLAMLEMNT--KDVLLLFTNKGNYLYCPVHELPDIRWKDL 78 (323)
T ss_dssp EEEEEEETTCEEEEEEHHHHHHTTTCCC--CCC---TTCCEEEEEEEET--TSEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred cEEEEEeCCCEEEEeEHHHhhhcCcccc--ccC---CCCEEEEEEEECC--CCEEEEEECCCEEEEEEHHHCcCCCCCCC
Confidence 347889999999977654220 010001 111 2223332222222 2257888888876665442 11100
Q ss_pred -eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEE
Q 020454 89 -VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (326)
Q Consensus 89 -~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 167 (326)
..+..... . .....|.++...... ..+..++.++.+|.++...+........ ..-+...++.....+..
T Consensus 79 G~~i~~~i~--L-~~~e~Iv~~~~~~~~-----~~~~~ll~~T~~G~iKrt~l~e~~~~~r--~~G~~ai~l~e~d~lv~ 148 (323)
T 1wp5_A 79 GQHIANIIP--I-DRDEEIIKAIPINDF-----ELNGYFLFVTRNGMVKKTELKHYKAQRY--SKPLTGINLKNDDQVVD 148 (323)
T ss_dssp CEEGGGTSC--C-CTTCCEEEEEEESCT-----TSSCEEEEEETTSEEEEEEGGGGCCSCC--SSCEECSCCCTTCCEEE
T ss_pred CcChhhccC--C-CCCCEEEEEEEeccc-----CCCceEEEEeCCCeEEEeEHHHhhhccc--cCceEEEEeCCCCEEEE
Confidence 00111000 0 122345554433311 0245799999999999888765432110 12233344444555555
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCceeeee-ecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (326)
Q Consensus 168 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~ 246 (326)
+........++..+.+|.+..+....-...-. .++.. ...+.....|.++...+. +...+++.+..|..+..++..
T Consensus 149 ~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~--~i~L~~~d~Vv~~~~~~~-~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 149 VHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVK--GMNLKEGDYIVSGQLITS-KDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEE--CCCCCTTCCEEEEEEECC-TTCEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEE--EEEeCCCCEEEEEEEEcC-CCcEEEEEECCCceEEEEHHH
Confidence 55544455666778889988888754222111 11111 111222234556554432 222678888899888877543
Q ss_pred C---C---CceeEEe---ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 247 Q---R---RPVMSFD---FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 247 ~---~---~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
. . +-+..+. .....+..+....++..++.-+.+|.+.-+.+..
T Consensus 226 ~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 226 FEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp SCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 1 1 1122221 1222454333323345566667778877777654
No 369
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=47.10 E-value=1.2e+02 Score=25.01 Aligned_cols=253 Identities=9% Similarity=0.002 Sum_probs=124.9
Q ss_pred eeeeeecCcccEEEEEecCC------cCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc---cc
Q 020454 15 LRALTFDSLGLIKVIEARGE------HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL---NG 85 (326)
Q Consensus 15 ~~l~~~~~~G~i~vw~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~---~~ 85 (326)
--+++.+.+|.||--.+..- -.|.. ...+.+ ...+..+..... ...|+..+..|.+.-+... ..
T Consensus 8 ~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~--~~~lke---~D~l~~~~~~~t--~d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 8 DVVVTLSHAGYAKRQPVSAYRAQRRGGRGRS--AASTKE---EDFIDQLWLVNT--HDTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CEEEEEESSCEEEEEEHHHHHHTCCCCCCSE--EEECSC---CCCEEEEEEECT--TCEEEEEETTSEEEEEEGGGSCBC
T ss_pred CEEEEEeCCCEEEEeeHHHhhhhccCCCCce--ecccCC---CCEEEEEEEecC--CCEEEEEeCCCeEEEEEHHHCcCC
Confidence 35788999999997654321 01111 112222 223333322222 2357777788877666542 11
Q ss_pred ce----eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccC
Q 020454 86 DL----RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA 161 (326)
Q Consensus 86 ~~----~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~ 161 (326)
.. ......+. . .....|.++....... .+..++.++..|.++...+...... .. .-+...++..
T Consensus 81 ~r~a~G~~i~~ll~---L-~~~e~Iv~~~~~~~~~-----~~~~ll~~T~~G~vKrt~l~e~~~~--~~-~G~~ai~L~~ 148 (370)
T 3l6v_A 81 GSNARGRPIINWIP---L-ESGERVQAVLPVREYA-----DNRYVFMATRNGTVKKTPLSEFAFR--LA-RGKIAINLDE 148 (370)
T ss_dssp CTTSCCEEGGGSCC---C-CTTCCEEEEEEESCCC-----TTCEEEEEETTSEEEEEEGGGGCSC--CT-TCEESSCCCT
T ss_pred CcccCCcCHhhccC---C-CCCCEEEEEEEeccCC-----CCcEEEEEeCCCeEEEeEHHHhhcc--cC-CceEEEEeCC
Confidence 10 00011110 0 1224566554432111 3458999999999999887764421 11 2233334444
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeee-ecCCCCCCCCcCCCCceeeeEEeec----------------
Q 020454 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSI---------------- 224 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~---------------- 224 (326)
...+..+........++..+.+|.+..|+...-+..-. .++.. ...+.....|-++...+.
T Consensus 149 ~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~--~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~ 226 (370)
T 3l6v_A 149 GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVR--GIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEV 226 (370)
T ss_dssp TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE--CCCCCTTCCEEEEEEECCC---------------
T ss_pred CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCee--eEEeCCCCEEEEEEEecccccccccccccccccc
Confidence 55555555544455666677888888887653221111 01100 111222233444444331
Q ss_pred -----------------CCCcEEEEEeCCCeEEEEeCCCCC------CceeEEe--ecCCceEEEEecCCCCeEEEEcCC
Q 020454 225 -----------------DDHRKFVAGTNDHQVRLYDTSAQR------RPVMSFD--FRETPIKAVAEEPDSFNIYIGNGS 279 (326)
Q Consensus 225 -----------------~~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~~--~~~~~i~~v~~s~~~~~l~~g~~d 279 (326)
.++..+++.+..|..+...+.... +-+..++ ...+.+..+.+..+...++.-+..
T Consensus 227 ~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~ 306 (370)
T 3l6v_A 227 VETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDG 306 (370)
T ss_dssp --------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETT
T ss_pred ccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCC
Confidence 023478899999999888754321 1122222 223445554433444556656777
Q ss_pred CcEEEEECC
Q 020454 280 GDLASVDIR 288 (326)
Q Consensus 280 g~v~iwd~~ 288 (326)
|.+.-..+.
T Consensus 307 G~~iR~~v~ 315 (370)
T 3l6v_A 307 GTLVRTRGS 315 (370)
T ss_dssp CCEEEEEGG
T ss_pred CeEEEeeHh
Confidence 776666554
No 370
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=45.33 E-value=1.2e+02 Score=24.31 Aligned_cols=114 Identities=10% Similarity=0.076 Sum_probs=73.3
Q ss_pred CCCeEEEEecCCcEEEEeccccce-----eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEE
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDL-----RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR 138 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~ 138 (326)
...+|+..+.+|.++...+..-.. +..+.. ...+.+.++.... .+..++..+.+|.+..+
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L-------~~~d~lv~~~~~~--------~~~~i~l~T~~G~~~r~ 177 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKL-------NDKDFVTSAEIVF--------KDEKVICLSKKGSAFIF 177 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC----CEECBCC-------CTTCCEEEEEEEC--------TTCEEEEEETTSEEEEE
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEec-------CCCCEEEEEEEeC--------CCCEEEEEeCCCcEEEE
Confidence 345788999999999988743211 111111 2235566555443 44579999999999888
Q ss_pred EccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC
Q 020454 139 SIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK 193 (326)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 193 (326)
..+.-. ..+....-++..++.....|..+..-.++..+++.+..|..+..++..
T Consensus 178 ~~~ev~-~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 178 NSRDVR-LTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EGGGSC-BCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EHHHcc-ccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 876532 122323345666666667777776655566677788899988888753
No 371
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=42.55 E-value=1.3e+02 Score=23.99 Aligned_cols=252 Identities=10% Similarity=0.055 Sum_probs=121.7
Q ss_pred eeeeecCcccEEEEEecCCc------CCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc---ccc
Q 020454 16 RALTFDSLGLIKVIEARGEH------GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL---NGD 86 (326)
Q Consensus 16 ~l~~~~~~G~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~---~~~ 86 (326)
-+++.+.+|.||--.+..-. .+...+ .+. +...+..+..... ...|+..+..|.+.-+... ...
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~--~~k---e~D~l~~~~~~~~--~~~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAA--RIK---EEDFIDRLLVANT--HDHILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp EEEEEETTSEEEEEECC-------------------------CCEEEEEEEET--TCEEEEEETTSEEEEEEGGGSCCCC
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceee--eeC---CCCEEEEEEEECC--CCEEEEEECCCEEEEEEhhHCcCCC
Confidence 47889999999876654310 011111 111 2222322222222 2257888888886666442 111
Q ss_pred e--e-eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCC
Q 020454 87 L--R-VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG 163 (326)
Q Consensus 87 ~--~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (326)
. . ..+..... . .....|.++...... ..+..++..+.+|.++...+....... . .-+...++....
T Consensus 78 ~~a~G~~i~~~l~--l-~~~e~i~~~~~~~~~-----~~~~~ll~~T~~G~~Krt~l~e~~~~~--r-~G~~~i~l~~~d 146 (307)
T 1zi0_A 78 RGARGRPIVNLLP--L-EQDERITAILPVTEF-----EEGVKVFMATANGTVKKTVLTEFNRLR--T-AGKVAIKLVDGD 146 (307)
T ss_dssp SSSCCEEGGGTSC--C-CTTCCEEEEEEESCC-----CTTCEEEEEETTSEEEEEEGGGGTTCC--T-TCEESSCCCTTC
T ss_pred CCCCCeEhhhccC--C-CCCCEEEEEEEeccC-----CCCcEEEEEeCCCeEEEEEHHHhhccc--c-CCeEEEEECCCC
Confidence 1 0 00000000 0 122346555432211 134579999999999988876433211 1 222333344445
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeee-ecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (326)
Q Consensus 164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw 242 (326)
.+..+........++..+.+|.+..++...-...-. ..+.. ...+.....|-++.... ++..+++.+..|.++-.
T Consensus 147 ~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~--~i~L~~~d~Vv~~~~~~--~~~~ll~~T~~G~~Kr~ 222 (307)
T 1zi0_A 147 ELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR--GIRLGEGDKVVSLIVPR--GDGAILTATQNGYGKRT 222 (307)
T ss_dssp CEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE--CCCCCTTCCEEEEECCC--SSCEEEEEETTSEEEEE
T ss_pred EEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeE--eEEeCCCCEEEEEEEec--CCCEEEEEEcCCceEEE
Confidence 555554444445566667888888887653222111 11110 11222223455554432 23478888999999988
Q ss_pred eCCCCC---C---ceeE--EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454 243 DTSAQR---R---PVMS--FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (326)
Q Consensus 243 d~~~~~---~---~~~~--~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~ 289 (326)
++.... + -+.. +....+.+..+....+...++.-+.+|.+.-++...
T Consensus 223 ~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 223 AVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp CGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 764221 1 1112 222234555444433445566667777777777654
No 372
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=42.20 E-value=79 Score=27.35 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=36.6
Q ss_pred eEEEEecCCcEEEEEccccccccccccceEEEEEcc-CCCceEEEEEcCCCCEEEEecCCCeEEE
Q 020454 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNV 188 (326)
Q Consensus 125 ~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~i 188 (326)
.++.|+.+|.|.-.-+.............+..+.+. .+.+|..|.+++++.+|.+++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 466778888775443321110000011123334442 3578999999999999999888876655
No 373
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=40.39 E-value=1.4e+02 Score=23.96 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=71.1
Q ss_pred CCeEEEEecCCcEEEEeccccceee---eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcc
Q 020454 65 DPLLAVARKNGLTDILNPLNGDLRV---AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (326)
Q Consensus 65 ~~~l~~g~~dg~i~i~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~ 141 (326)
+.+++..+.+|.++-..+..-.... -...+.. ...+.+..+.... .+..++..+.+|.+..+..+
T Consensus 106 ~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l----~e~d~lv~~~~~~--------~~~~i~l~T~~G~~irf~~~ 173 (323)
T 1wp5_A 106 NGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINL----KNDDQVVDVHLTD--------GMNELFLVTHNGYALWFDES 173 (323)
T ss_dssp SCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCC----CTTCCEEEEEEEC--------SCSEEEEEETTSEEEEEEGG
T ss_pred CceEEEEeCCCeEEEeEHHHhhhccccCceEEEEe----CCCCEEEEEEEeC--------CCCEEEEEeCCCcEEEEEHH
Confidence 5579999999999999875222111 1111110 1224555544433 44578999999998888876
Q ss_pred ccccccccccceEEEEEccCCCceEEEEEcCCCC-EEEEecCCCeEEEEECCC
Q 020454 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDK 193 (326)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~ 193 (326)
.-. ..+....-++..++.....|..+...+++. .+++.+..|..+..++..
T Consensus 174 ev~-~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 174 EVS-IVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp GSC-BCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred HCc-ccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 532 223333445666666667777776544444 677778888888777653
No 374
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=38.05 E-value=1.7e+02 Score=24.01 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=28.6
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCceeEE--eecCCceEEEEecC-CCCeEEEEcCCC
Q 020454 228 RKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEP-DSFNIYIGNGSG 280 (326)
Q Consensus 228 ~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~~i~~v~~s~-~~~~l~~g~~dg 280 (326)
..|.+++..| +.+++........... ......|.+|+++| +...|+++...|
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g 77 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTG 77 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC-
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCC
Confidence 3788888777 5555533211112222 23346799999998 344555555555
No 375
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=37.34 E-value=1.5e+02 Score=23.19 Aligned_cols=235 Identities=12% Similarity=0.084 Sum_probs=111.8
Q ss_pred CCCCeeeeeecCcccEEEEEecCC-cCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc-ccee
Q 020454 11 GCPPLRALTFDSLGLIKVIEARGE-HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLR 88 (326)
Q Consensus 11 ~~~~~~l~~~~~~G~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~-~~~~ 88 (326)
.|.....+.-+ +|.|..|-.... ..+.+.. ... .+..++.... ..++. . ||.|..|-... +++-
T Consensus 30 a~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~------~~~--~i~~ia~G~~---hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 30 AGGYFHGLALK-GGKVLGWGANLNGQLTMPAA------TQS--GVDAIAAGNY---HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp EECSSEEEEEE-TTEEEEEECCSSSTTSCCGG------GGS--CCCEEEECSS---EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred EeCCCeEEEEE-CCEEEEEeCCCCCCCCCCcc------CCC--CEEEEEeCCC---EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 34444444445 888888876543 1222211 011 1222222111 12444 4 89999996542 2221
Q ss_pred eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 168 (326)
..... ...|..++. .....++.. +|.++.|-.+...... . .......|..+
T Consensus 96 ~P~~~---------~~~v~~ia~----------G~~hs~al~-~G~v~~wG~n~~gqlg-~--------~~~~~~~i~~i 146 (282)
T 3qhy_B 96 VPAEA---------RSGVDAIAA----------GAWASYALK-DGKVIAWGDDSDGQTT-V--------PAEAQSGVTAL 146 (282)
T ss_dssp CCGGG---------SSSEEEEEE----------ETTEEEEEE-TTEEEEEECCTTSTTS-C--------CGGGGSSEEEE
T ss_pred CCccc---------CCCeEEEEC----------cCCEEEEEe-CCeEEEecCCCCCcCC-C--------CccCCCCeEEE
Confidence 11110 134555553 223455556 9999999866533211 0 01112346666
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC
Q 020454 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (326)
Q Consensus 169 ~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~ 248 (326)
+.-....++ . . |+.|..|-....-.+-. + ......|..++.-. ...++. .||.|+.|-.....
T Consensus 147 ~~G~~~~~~-l-~-~G~v~~wG~n~~gqlg~----p-----~~~~~~v~~i~~G~---~hs~al--~~G~v~~wG~n~~g 209 (282)
T 3qhy_B 147 DGGVYTALA-V-K-NGGVIAWGDNYFGQTTV----P-----AEAQSGVDDVAGGI---FHSLAL--KDGKVIAWGDNRYK 209 (282)
T ss_dssp EECSSEEEE-E-E-TTEEEEEECCTTSTTSC----C-----GGGGSSEEEEEECS---SEEEEE--ETTEEEEEECCTTS
T ss_pred EcccCEEEE-E-E-CCEEEEecCCCCCCCCC----c-----eecCCCeEEEEecC---CEEEEE--ECCeEEEEECCCCC
Confidence 554333333 2 2 68888887654221110 0 00112355555432 224444 59999999765432
Q ss_pred CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC
Q 020454 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (326)
Q Consensus 249 ~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 314 (326)
+.-... .....|..|+-... ..++. . ||.|+.|=.....++. ....|.+|+-.....
T Consensus 210 qlg~p~-~~~~~v~~i~~G~~-h~~al-~-~g~v~~wG~n~~gq~~-----v~~~v~~iaaG~~h~ 266 (282)
T 3qhy_B 210 QTTVPT-EALSGVSAIASGEW-YSLAL-K-NGKVIAWGSSRTAPSS-----VQSGVSSIEAGPNAA 266 (282)
T ss_dssp TTCCCG-GGGSSCCEEEECSS-CEEEE-E-TTEEEEESTTCCCCGG-----GSSCEEEEEECSSCE
T ss_pred CCCCCc-ccCCCceEEEcCCC-EEEEE-E-CCEEEEecCCCCcccc-----CCCCcEEEEECcCeE
Confidence 211001 11235666665433 33333 3 9999999766533221 133566666655443
No 376
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=36.04 E-value=1.8e+02 Score=23.81 Aligned_cols=102 Identities=13% Similarity=0.081 Sum_probs=50.4
Q ss_pred ceeeeEEeecC-CCcEEEEEeCCCeEEEEeCCCCCCceeEEe-------------------ecCCceEEEEecCC-CCeE
Q 020454 215 WFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-------------------FRETPIKAVAEEPD-SFNI 273 (326)
Q Consensus 215 ~v~~~~~~p~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------------------~~~~~i~~v~~s~~-~~~l 273 (326)
.|.++++.|.+ .+ .+.+++..+.|...+-. + +.-..+. .....+.+|.++|. ...|
T Consensus 116 ~i~~l~~~~~~~~~-~l~~g~~~ggl~~S~Dg-G-~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l 192 (394)
T 3b7f_A 116 HVFWLTPGHASEPG-TWYAGTSPQGLFRSTDH-G-ASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHL 192 (394)
T ss_dssp EEEEEEECCTTSTT-CEEEEEETTEEEEESST-T-SBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCE
T ss_pred ceeEEEeCCCCCCC-EEEEEecCCcEEEEcCC-C-CCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEE
Confidence 46778888753 34 55555555655544322 1 1111111 11235788999884 4556
Q ss_pred EEEcCCCcEEEEECCCCeEEEEEcc-----ee-------cceEEEEEECCC-CCEEEEec
Q 020454 274 YIGNGSGDLASVDIRTGKLLGCFIG-----KC-------SGSIRSIARHPT-LPIIASCG 320 (326)
Q Consensus 274 ~~g~~dg~v~iwd~~~~~~~~~~~~-----~~-------~~~v~~l~~~p~-~~~l~s~s 320 (326)
+++..++.|...+- .++.-..+.. +. ...+..|+++|. ...|..+.
T Consensus 193 ~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~ 251 (394)
T 3b7f_A 193 YIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN 251 (394)
T ss_dssp EEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE
T ss_pred EEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc
Confidence 66655554544322 2222111110 00 124889999986 24455444
No 377
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=35.38 E-value=1.5e+02 Score=26.44 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=35.1
Q ss_pred eeeeEEeecCCCcEEEEEeCC------------CeEEEEeCCCCCCceeEEe-e-cCCceEEEEecCCCCeEEEE
Q 020454 216 FTSAAFLSIDDHRKFVAGTND------------HQVRLYDTSAQRRPVMSFD-F-RETPIKAVAEEPDSFNIYIG 276 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~d------------g~v~iwd~~~~~~~~~~~~-~-~~~~i~~v~~s~~~~~l~~g 276 (326)
.-.+.|.| .+++++.-..+ ..+.+.+..++ + +..|. . ....++.++|+||++.|++.
T Consensus 478 PDNL~fd~--~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g-~-~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDK--AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-E-IRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECT--TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC-C-EEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECC--CCCEEEEecCCCcccccccccccceEEEEeCCCC-e-EEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34678887 45444443221 24556666654 3 33333 2 35689999999999988865
No 378
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=34.66 E-value=1.8e+02 Score=25.49 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=45.3
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCC-CCC-CceeEEee-cCCce-EEEEecCCCCeEEEEcCCCcEEEE
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTS-AQR-RPVMSFDF-RETPI-KAVAEEPDSFNIYIGNGSGDLASV 285 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~-~~~-~~~~~~~~-~~~~i-~~v~~s~~~~~l~~g~~dg~v~iw 285 (326)
.++|+.....+...++.|+.+|.|.-.-.. ... ..+..+.. ...+| ..+.++++..+|++++.++.+++-
T Consensus 389 lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~vp 462 (528)
T 3ol2_B 389 LTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKVP 462 (528)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEEE
T ss_pred eEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEEE
Confidence 456665554444467789999988755443 221 22333333 34567 488999999999999988877663
No 379
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=34.63 E-value=1.5e+02 Score=26.81 Aligned_cols=64 Identities=9% Similarity=0.029 Sum_probs=35.7
Q ss_pred eEEEEecCCcEEEEEccccccccccccceEEEEEc-cCCCceEEEEEcCCCCEEEEecCCCeEEE
Q 020454 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNV 188 (326)
Q Consensus 125 ~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~i 188 (326)
.++.|+.+|.|.-.-+...........-.+..+.+ ..+.+|..|.+++++..|.+++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 46677788877422211111000001112222222 34667899999999999999988876665
No 380
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=34.55 E-value=1.3e+02 Score=27.21 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=43.8
Q ss_pred eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC---ceeEEee--cCCce-EEEEecCCCCeEEEEcCCCcEEE
Q 020454 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDF--RETPI-KAVAEEPDSFNIYIGNGSGDLAS 284 (326)
Q Consensus 216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~--~~~~i-~~v~~s~~~~~l~~g~~dg~v~i 284 (326)
.++++.....+...++.|+.+|.|.-.-+..... .+.++.. ...+| ..+.++++..+|++++.++.+++
T Consensus 401 lT~VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 401 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp BCCCEEEEETTEEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEEEecCceEEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 4455555443445778899999887554432211 1223322 34566 68899999899999988877666
No 381
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=34.54 E-value=2.7e+02 Score=25.40 Aligned_cols=92 Identities=20% Similarity=0.120 Sum_probs=50.4
Q ss_pred CCCeEEEEecCCcEEEEecccccee-----eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEE
Q 020454 64 NDPLLAVARKNGLTDILNPLNGDLR-----VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR 138 (326)
Q Consensus 64 ~~~~l~~g~~dg~i~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~ 138 (326)
.+.+++.++.+|.++...+..-... ..+.. ...+.+....... ..+..++..+.+|.+..+
T Consensus 564 ~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L-------~~~d~lv~~~~~~-------~~~~~v~l~t~~g~~lrf 629 (716)
T 1zvu_A 564 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL-------PENAHVMPPVVIE-------DASDMLLAITQAGRMLMF 629 (716)
T ss_dssp TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCC-------CTTCCBCCCEECC-------CTTCEEEEEETTSEEEEE
T ss_pred CCceEEEEeCCceEEEecHHHhcccCccceEEEee-------CCCCEEEEEEEec-------CCCCEEEEEeCCCeEEEE
Confidence 3567999999999999877532111 11111 1123333333221 034578999999999888
Q ss_pred EccccccccccccceEEEEEcc------CCCceEEEEEc
Q 020454 139 SIEVTKVSAESSCSTVKSWNVC------ASGTIAFSKVD 171 (326)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~ 171 (326)
..+.-.. .+. ..-++..++. .+..|..+..-
T Consensus 630 ~~~~v~~-~gr-~~GV~~i~l~~~~~k~~~d~v~~~~~~ 666 (716)
T 1zvu_A 630 PVSDLPQ-LSK-GKGNKIINIPSAEAARGEDGLAQLYVL 666 (716)
T ss_dssp ESTTSCB-CSS-BSCEESSCCCHHHHHTTSSCEEEEEEE
T ss_pred EHHHCCc-cCc-ccCeEEEEecccccCCCCCEEEEEEEe
Confidence 8764322 222 3334444444 44556666433
No 382
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=31.36 E-value=1.7e+02 Score=25.96 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=37.0
Q ss_pred ceeeeEEeecCCCcEEEEEeC------------CCeEEEEeCCCCCCceeEEee--cCCceEEEEecCCCCeEEEEc
Q 020454 215 WFTSAAFLSIDDHRKFVAGTN------------DHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGN 277 (326)
Q Consensus 215 ~v~~~~~~p~~~~~~l~~~~~------------dg~v~iwd~~~~~~~~~~~~~--~~~~i~~v~~s~~~~~l~~g~ 277 (326)
....+.|.+ +|.+.+.... ...|..++..++ + +..+.. ....++.++|+||++.|++.-
T Consensus 477 sPDnL~fd~--~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG-e-l~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDK--AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-E-IRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECT--TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC-C-EEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECC--CCCEEEEeCCCcCccccccccCCceEEEEeCCCC-e-EEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 456788876 4545552211 226777777655 3 444432 235789999999999888653
No 383
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=30.01 E-value=1.9e+02 Score=26.18 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=37.0
Q ss_pred EEEEEeCCCeEEEE-eCCCCCCceeEEee--cCCceEEEEecCCC--CeEEEEcCCCcEEE
Q 020454 229 KFVAGTNDHQVRLY-DTSAQRRPVMSFDF--RETPIKAVAEEPDS--FNIYIGNGSGDLAS 284 (326)
Q Consensus 229 ~l~~~~~dg~v~iw-d~~~~~~~~~~~~~--~~~~i~~v~~s~~~--~~l~~g~~dg~v~i 284 (326)
.++.|+.+|.|.-. ........+..+.. ...+|..|.++++. .+|++++.++.+++
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 67788999977543 33322112222222 34688999999988 89999988876655
No 384
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=28.83 E-value=2.7e+02 Score=23.71 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=37.7
Q ss_pred CceeEEeecC-CceEEEEecCC-------CCeEEEEcCCCcEEEEECCCCeE---EEEE-cc-------eecceEEEEEE
Q 020454 249 RPVMSFDFRE-TPIKAVAEEPD-------SFNIYIGNGSGDLASVDIRTGKL---LGCF-IG-------KCSGSIRSIAR 309 (326)
Q Consensus 249 ~~~~~~~~~~-~~i~~v~~s~~-------~~~l~~g~~dg~v~iwd~~~~~~---~~~~-~~-------~~~~~v~~l~~ 309 (326)
.|+..+..+. ..+..+.|-.. +. ++.+...+.|....+..... ...+ .+ .....+..+..
T Consensus 265 ~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~-~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~ 343 (463)
T 2wg3_C 265 PSLLEFKPFSNGPLVGGFVYRGCQSERLYGS-YVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGE 343 (463)
T ss_dssp CCCEECCC----CEEEEEECCCSSCTTTTTC-EEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEE
T ss_pred CCeEEeeCCCCccccceEEEeCCCChhhcce-EEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEE
Confidence 3566654331 46677777422 33 44455557777666654321 1112 11 11357999999
Q ss_pred CCCCCEEEEec
Q 020454 310 HPTLPIIASCG 320 (326)
Q Consensus 310 ~p~~~~l~s~s 320 (326)
.|++.++++..
T Consensus 344 ~pdG~Lyv~~~ 354 (463)
T 2wg3_C 344 DELGEVYILSS 354 (463)
T ss_dssp CTTCCEEEEEE
T ss_pred CCCCCEEEEec
Confidence 99998777654
No 385
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=26.59 E-value=3.7e+02 Score=24.52 Aligned_cols=118 Identities=7% Similarity=0.022 Sum_probs=61.3
Q ss_pred CCceEEEEecCCcEEEEEccccccccccccce--EEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeee
Q 020454 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCST--VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (326)
Q Consensus 122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 199 (326)
....++.-+..|.++-.....-. .+...|. ..+..+..+..|..+-...+..+++.++..|.++.-.+..-....
T Consensus 513 t~d~ll~ft~~Gr~y~~~~~~lP--~~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~- 589 (716)
T 1zvu_A 513 SNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN- 589 (716)
T ss_dssp SSSCEEEEETTSEEEEECTTTSC--CCC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCS-
T ss_pred CCCEEEEEecCCcEEEEEeeecc--cccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccC-
Confidence 44578888888886554433221 1111111 112233445566666555567788888999999988775321110
Q ss_pred ecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC
Q 020454 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (326)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~ 245 (326)
........+.....+-.+..... ....++..+.+|.+..|+..
T Consensus 590 --~~g~~ai~L~~~d~lv~~~~~~~-~~~~v~l~t~~g~~lrf~~~ 632 (716)
T 1zvu_A 590 --RAGKALITLPENAHVMPPVVIED-ASDMLLAITQAGRMLMFPVS 632 (716)
T ss_dssp --TTCEECBCCCTTCCBCCCEECCC-TTCEEEEEETTSEEEEEEST
T ss_pred --ccceEEEeeCCCCEEEEEEEecC-CCCEEEEEeCCCeEEEEEHH
Confidence 00000111111122223333322 23378888899999999865
No 386
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=24.05 E-value=2.4e+02 Score=25.50 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=36.4
Q ss_pred EEEEEeCCCeEE-EEeCCCCC-C-----ceeEEe--ecCCceEEEEecCCCCeEEEEcCCCcEEE
Q 020454 229 KFVAGTNDHQVR-LYDTSAQR-R-----PVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (326)
Q Consensus 229 ~l~~~~~dg~v~-iwd~~~~~-~-----~~~~~~--~~~~~i~~v~~s~~~~~l~~g~~dg~v~i 284 (326)
.++.|+.+|.|+ +.-..... . .+.++. ....+|..+.++++..+|++++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 677899999875 32222110 1 122222 24568999999999999999999876655
No 387
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=23.37 E-value=3.4e+02 Score=24.14 Aligned_cols=58 Identities=9% Similarity=0.150 Sum_probs=38.0
Q ss_pred cEEEEEeCCCeEEEEeCCCCCC---c--eeEEe--ecCCceEEEEecCCCCeEEEEcCCCcEEEE
Q 020454 228 RKFVAGTNDHQVRLYDTSAQRR---P--VMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASV 285 (326)
Q Consensus 228 ~~l~~~~~dg~v~iwd~~~~~~---~--~~~~~--~~~~~i~~v~~s~~~~~l~~g~~dg~v~iw 285 (326)
..++.|+.+|.|.-.-...... . +.++. ....+|..+.++++..+|++++.++.+++-
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 3677889999876443322111 1 12232 235689999999999999999888766653
No 388
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=21.73 E-value=3.1e+02 Score=24.23 Aligned_cols=27 Identities=11% Similarity=-0.039 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEE
Q 020454 162 SGTIAFSKVDISEKFSLFGGKGVEVNV 188 (326)
Q Consensus 162 ~~~v~~~~~~~~~~~l~sg~~d~~i~i 188 (326)
..+|..|.++++...|.+++.++.+++
T Consensus 469 ~~pI~~L~ls~~~~~LYV~s~~~V~qV 495 (565)
T 3oky_B 469 DKRIMGMQLDRASGSLYVAFSTCVIKV 495 (565)
T ss_dssp CCCCCEEEEEGGGTEEEEECSSCEEEE
T ss_pred CCceEEEEEcCCCCEEEEEecCeEEEe
Confidence 457889999998899989888877766
Done!