Query 020455
Match_columns 326
No_of_seqs 208 out of 854
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 03:13:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 2.3E-17 8E-22 129.7 3.6 65 190-254 6-70 (82)
2 4ati_A MITF, microphthalmia-as 99.7 1.1E-16 3.9E-21 133.7 7.3 73 177-249 14-89 (118)
3 1an4_A Protein (upstream stimu 99.6 1.1E-15 3.8E-20 114.6 3.1 56 188-243 3-63 (65)
4 1a0a_A BHLH, protein (phosphat 99.6 6.9E-16 2.3E-20 116.4 2.0 55 190-244 2-62 (63)
5 4h10_B Circadian locomoter out 99.5 1.6E-15 5.4E-20 117.5 3.5 59 189-247 7-65 (71)
6 4h10_A ARYL hydrocarbon recept 99.5 2E-15 6.7E-20 117.3 0.6 55 186-241 5-63 (73)
7 1hlo_A Protein (transcription 99.5 3.7E-14 1.3E-18 110.5 5.7 61 191-252 13-75 (80)
8 1nkp_B MAX protein, MYC proto- 99.5 5E-14 1.7E-18 110.1 5.8 59 192-251 4-64 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 2.2E-13 7.4E-18 108.6 6.0 58 192-250 8-68 (88)
10 3u5v_A Protein MAX, transcript 99.4 2E-13 6.8E-18 106.6 3.9 58 191-248 6-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 1E-11 3.5E-16 97.6 6.9 58 193-251 4-64 (80)
12 4f3l_A Mclock, circadian locom 99.0 2.4E-10 8.2E-15 107.8 5.8 55 187-242 9-64 (361)
13 1mdy_A Protein (MYOD BHLH doma 99.0 4.3E-10 1.5E-14 86.1 4.8 53 192-244 14-67 (68)
14 2ql2_B Neurod1, neurogenic dif 98.9 1.7E-09 5.6E-14 80.9 5.5 52 193-244 5-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 4.5E-10 1.5E-14 107.4 3.1 56 186-242 9-68 (387)
16 4ath_A MITF, microphthalmia-as 98.6 5.8E-08 2E-12 77.3 6.1 48 202-249 4-54 (83)
17 2lfh_A DNA-binding protein inh 98.5 5.8E-08 2E-12 74.8 2.4 47 195-241 19-67 (68)
18 4aya_A DNA-binding protein inh 97.8 2.8E-05 9.6E-10 63.5 6.5 50 198-247 33-84 (97)
19 2wt7_A Proto-oncogene protein 45.4 41 0.0014 24.5 5.3 16 198-213 1-16 (63)
20 3muj_A Transcription factor CO 35.8 41 0.0014 28.8 4.5 35 204-239 95-133 (138)
21 2er8_A Regulatory protein Leu3 35.1 28 0.00095 24.9 3.0 21 234-254 49-69 (72)
22 1zme_C Proline utilization tra 31.3 17 0.00057 25.8 1.2 20 234-253 44-63 (70)
23 1dh3_A Transcription factor CR 29.5 30 0.001 24.8 2.3 20 234-253 22-41 (55)
24 1hwt_C Protein (heme activator 28.2 31 0.0011 25.1 2.2 22 233-254 57-78 (81)
25 1p3q_Q VPS9P, vacuolar protein 26.6 49 0.0017 24.1 3.0 26 196-221 3-28 (54)
26 3coq_A Regulatory protein GAL4 23.5 49 0.0017 24.3 2.6 23 234-256 45-67 (89)
27 2jee_A YIIU; FTSZ, septum, coi 23.2 61 0.0021 25.4 3.1 25 229-253 15-39 (81)
28 1pyi_A Protein (pyrimidine pat 22.9 89 0.003 23.3 4.0 22 234-255 48-69 (96)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.66 E-value=2.3e-17 Score=129.67 Aligned_cols=65 Identities=26% Similarity=0.413 Sum_probs=58.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhcCCCCCcCCChhchHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 020455 190 ATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASVN 254 (326)
Q Consensus 190 a~~~HslaERrRRekINer~~~LqsLVP~~~K~tDKAsIL~eAI~YIk~Lq~qVq~Le~~~~~~~ 254 (326)
++..|+++||+||++||++|.+|++|||+++.+.||++||++||+||++|+.+++.|++++..+.
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44679999999999999999999999999844469999999999999999999999998876543
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.66 E-value=1.1e-16 Score=133.74 Aligned_cols=73 Identities=27% Similarity=0.377 Sum_probs=51.2
Q ss_pred CcccccccccCCCCCCCcchHHHHHHHHHHHHHHHHhhcCCCCCc---CCChhchHHHHHHHHHHHHHHHHHHHhh
Q 020455 177 PKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDK---VTGKAFMLDEIINYVQFLQNQVEFLSMK 249 (326)
Q Consensus 177 ~~~~~~~Rarr~~a~~~HslaERrRRekINer~~~LqsLVP~~~K---~tDKAsIL~eAI~YIk~Lq~qVq~Le~~ 249 (326)
+....+..+++++++.+|+++||+||++||++|.+|++|||+|.+ +.+|++||+.||+||++||.+++.|++.
T Consensus 14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556778888999999999999999999999999999999853 2489999999999999999999999865
No 3
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=1.1e-15 Score=114.59 Aligned_cols=56 Identities=27% Similarity=0.395 Sum_probs=49.7
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHhhcCCCCCc-----CCChhchHHHHHHHHHHHHHHH
Q 020455 188 GQATDSHSLAERVRREKISERMKILQKLVPGCDK-----VTGKAFMLDEIINYVQFLQNQV 243 (326)
Q Consensus 188 ~~a~~~HslaERrRRekINer~~~LqsLVP~~~K-----~tDKAsIL~eAI~YIk~Lq~qV 243 (326)
..+...|+++||+||++||+.|.+|++|||.|.. +.+|++||+.||+||+.|+.+.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999862 2499999999999999999865
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.55 E-value=6.9e-16 Score=116.45 Aligned_cols=55 Identities=27% Similarity=0.419 Sum_probs=48.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhcCCCCCc------CCChhchHHHHHHHHHHHHHHHH
Q 020455 190 ATDSHSLAERVRREKISERMKILQKLVPGCDK------VTGKAFMLDEIINYVQFLQNQVE 244 (326)
Q Consensus 190 a~~~HslaERrRRekINer~~~LqsLVP~~~K------~tDKAsIL~eAI~YIk~Lq~qVq 244 (326)
++++|+++||+||++||+.|..|+.|||.+.+ ..+||+||+.||+||+.||++|+
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 35679999999999999999999999997633 23699999999999999998763
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.55 E-value=1.6e-15 Score=117.54 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=51.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHhhcCCCCCcCCChhchHHHHHHHHHHHHHHHHHHH
Q 020455 189 QATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLS 247 (326)
Q Consensus 189 ~a~~~HslaERrRRekINer~~~LqsLVP~~~K~tDKAsIL~eAI~YIk~Lq~qVq~Le 247 (326)
.++.+|+++||+||++||++|.+|++|||++..+.||++||+.||+||+.||.++.-|+
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34457999999999999999999999999865335999999999999999999887654
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.50 E-value=2e-15 Score=117.25 Aligned_cols=55 Identities=31% Similarity=0.478 Sum_probs=48.6
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHHHHHhhcCCCC----CcCCChhchHHHHHHHHHHHHH
Q 020455 186 RRGQATDSHSLAERVRREKISERMKILQKLVPGC----DKVTGKAFMLDEIINYVQFLQN 241 (326)
Q Consensus 186 rr~~a~~~HslaERrRRekINer~~~LqsLVP~~----~K~tDKAsIL~eAI~YIk~Lq~ 241 (326)
+..+++.+|+++||+||++||+.|.+|+.|||.| .|+ |||+||+.||+||+.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence 3444567799999999999999999999999987 464 999999999999999974
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=3.7e-14 Score=110.47 Aligned_cols=61 Identities=25% Similarity=0.475 Sum_probs=55.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHHHHHhhhhc
Q 020455 191 TDSHSLAERVRREKISERMKILQKLVPGC--DKVTGKAFMLDEIINYVQFLQNQVEFLSMKLAS 252 (326)
Q Consensus 191 ~~~HslaERrRRekINer~~~LqsLVP~~--~K~tDKAsIL~eAI~YIk~Lq~qVq~Le~~~~~ 252 (326)
...|+.+||+||.+||+.|..|++|||.+ .| .+|++||..||+||+.|+.+++.|+.++..
T Consensus 13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~ 75 (80)
T 1hlo_A 13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDD 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999987 46 499999999999999999999999988654
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.46 E-value=5e-14 Score=110.11 Aligned_cols=59 Identities=25% Similarity=0.490 Sum_probs=53.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHHHHHhhhh
Q 020455 192 DSHSLAERVRREKISERMKILQKLVPGC--DKVTGKAFMLDEIINYVQFLQNQVEFLSMKLA 251 (326)
Q Consensus 192 ~~HslaERrRRekINer~~~LqsLVP~~--~K~tDKAsIL~eAI~YIk~Lq~qVq~Le~~~~ 251 (326)
..|+.+||+||++||+.|..|+++||.+ .| .+|++||..||+||+.|+.+++.|+.++.
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~ 64 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDID 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999985 66 49999999999999999998888886653
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=2.2e-13 Score=108.64 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=51.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhcCCCC---CcCCChhchHHHHHHHHHHHHHHHHHHHhhh
Q 020455 192 DSHSLAERVRREKISERMKILQKLVPGC---DKVTGKAFMLDEIINYVQFLQNQVEFLSMKL 250 (326)
Q Consensus 192 ~~HslaERrRRekINer~~~LqsLVP~~---~K~tDKAsIL~eAI~YIk~Lq~qVq~Le~~~ 250 (326)
..|+..||+||++||++|..|+++||.+ .| .+|++||..||+||++|+.+.+.|..+.
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K-~sK~~iL~~A~~YI~~L~~~~~~l~~~~ 68 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEK-APKVVILKKATAYILSVQAEEQKLISEE 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999976 46 4999999999999999999988776543
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.38 E-value=2e-13 Score=106.62 Aligned_cols=58 Identities=26% Similarity=0.360 Sum_probs=49.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhcCCCC---CcCCChhchHHHHHHHHHHHHHHHHHHHh
Q 020455 191 TDSHSLAERVRREKISERMKILQKLVPGC---DKVTGKAFMLDEIINYVQFLQNQVEFLSM 248 (326)
Q Consensus 191 ~~~HslaERrRRekINer~~~LqsLVP~~---~K~tDKAsIL~eAI~YIk~Lq~qVq~Le~ 248 (326)
...|+..||+||+.||+.|.+|+.+||.+ +|...|+.||..||+||++|+++|++++.
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35699999999999999999999999953 44336889999999999999999998864
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.25 E-value=1e-11 Score=97.57 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=52.0
Q ss_pred CcchHHHHHHHHHHHHHHHHhhcCCCC---CcCCChhchHHHHHHHHHHHHHHHHHHHhhhh
Q 020455 193 SHSLAERVRREKISERMKILQKLVPGC---DKVTGKAFMLDEIINYVQFLQNQVEFLSMKLA 251 (326)
Q Consensus 193 ~HslaERrRRekINer~~~LqsLVP~~---~K~tDKAsIL~eAI~YIk~Lq~qVq~Le~~~~ 251 (326)
.|+..||+||..||+.|..|+++||.+ .| ..|+.||..||+||+.|+.+.+.|..+..
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k-~sk~~iL~kA~~yI~~L~~~~~~l~~e~~ 64 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKAVHQID 64 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999965 45 48999999999999999999988876643
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.01 E-value=2.4e-10 Score=107.79 Aligned_cols=55 Identities=22% Similarity=0.385 Sum_probs=41.4
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHhhcCCC-CCcCCChhchHHHHHHHHHHHHHH
Q 020455 187 RGQATDSHSLAERVRREKISERMKILQKLVPG-CDKVTGKAFMLDEIINYVQFLQNQ 242 (326)
Q Consensus 187 r~~a~~~HslaERrRRekINer~~~LqsLVP~-~~K~tDKAsIL~eAI~YIk~Lq~q 242 (326)
...+..+|+.+||+||++||+.|.+|++|||. ..|+ ||++||..||+||+.|+..
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhh
Confidence 34455679999999999999999999999994 4565 9999999999999999864
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.97 E-value=4.3e-10 Score=86.15 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=46.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhcCCCC-CcCCChhchHHHHHHHHHHHHHHHH
Q 020455 192 DSHSLAERVRREKISERMKILQKLVPGC-DKVTGKAFMLDEIINYVQFLQNQVE 244 (326)
Q Consensus 192 ~~HslaERrRRekINer~~~LqsLVP~~-~K~tDKAsIL~eAI~YIk~Lq~qVq 244 (326)
..|+..||+|+..||+.|..|+++||.. +++.+|+.||..||+||.+|++.++
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3499999999999999999999999964 3335899999999999999998653
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.89 E-value=1.7e-09 Score=80.94 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=46.1
Q ss_pred CcchHHHHHHHHHHHHHHHHhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHH
Q 020455 193 SHSLAERVRREKISERMKILQKLVPGC--DKVTGKAFMLDEIINYVQFLQNQVE 244 (326)
Q Consensus 193 ~HslaERrRRekINer~~~LqsLVP~~--~K~tDKAsIL~eAI~YIk~Lq~qVq 244 (326)
.|+..||+|+..||+.|..|+++||.. +++..|..+|..||+||..|++.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 388999999999999999999999964 3445999999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.89 E-value=4.5e-10 Score=107.40 Aligned_cols=56 Identities=29% Similarity=0.387 Sum_probs=48.3
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHHHHHhhcCC----CCCcCCChhchHHHHHHHHHHHHHH
Q 020455 186 RRGQATDSHSLAERVRREKISERMKILQKLVP----GCDKVTGKAFMLDEIINYVQFLQNQ 242 (326)
Q Consensus 186 rr~~a~~~HslaERrRRekINer~~~LqsLVP----~~~K~tDKAsIL~eAI~YIk~Lq~q 242 (326)
|.+.++++|+.+||+||++||+.|.+|+.||| ...|+ ||++||..||+||+.|+..
T Consensus 9 ~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 9 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence 44555678999999999999999999999999 45675 9999999999999999853
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.60 E-value=5.8e-08 Score=77.33 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhcCCCCCc---CCChhchHHHHHHHHHHHHHHHHHHHhh
Q 020455 202 REKISERMKILQKLVPGCDK---VTGKAFMLDEIINYVQFLQNQVEFLSMK 249 (326)
Q Consensus 202 RekINer~~~LqsLVP~~~K---~tDKAsIL~eAI~YIk~Lq~qVq~Le~~ 249 (326)
|..||++|.+|..|||.+.. ..+|++||..||+||++||..++.+.+.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999997632 2489999999999999999877666543
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.45 E-value=5.8e-08 Score=74.79 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCC--CcCCChhchHHHHHHHHHHHHH
Q 020455 195 SLAERVRREKISERMKILQKLVPGC--DKVTGKAFMLDEIINYVQFLQN 241 (326)
Q Consensus 195 slaERrRRekINer~~~LqsLVP~~--~K~tDKAsIL~eAI~YIk~Lq~ 241 (326)
+..||+|+..||+.|..||.+||.. +++..|..+|..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3458899999999999999999965 3345899999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.84 E-value=2.8e-05 Score=63.49 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHHHHH
Q 020455 198 ERVRREKISERMKILQKLVPGC--DKVTGKAFMLDEIINYVQFLQNQVEFLS 247 (326)
Q Consensus 198 ERrRRekINer~~~LqsLVP~~--~K~tDKAsIL~eAI~YIk~Lq~qVq~Le 247 (326)
||.|=..||+.|..||.+||.. +++..|..+|..||+||..|+..++.-.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4677778999999999999964 4445899999999999999998876543
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=45.37 E-value=41 Score=24.45 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 020455 198 ERVRREKISERMKILQ 213 (326)
Q Consensus 198 ERrRRekINer~~~Lq 213 (326)
||++|.+...++.+.+
T Consensus 1 Ekr~rrrerNR~AA~r 16 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAK 16 (63)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHH
Confidence 4556666666666665
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=35.81 E-value=41 Score=28.84 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhcCCCC----CcCCChhchHHHHHHHHHHH
Q 020455 204 KISERMKILQKLVPGC----DKVTGKAFMLDEIINYVQFL 239 (326)
Q Consensus 204 kINer~~~LqsLVP~~----~K~tDKAsIL~eAI~YIk~L 239 (326)
-|.-.|..|+.+||.- .+ .-|-.||..|.|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~-lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPER-LPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSS-CCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhh-hhHHHHHHHHHHHHHHH
Confidence 5888999999999842 34 37999999999998876
No 21
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=35.09 E-value=28 Score=24.91 Aligned_cols=21 Identities=10% Similarity=0.176 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhhhcCC
Q 020455 234 NYVQFLQNQVEFLSMKLASVN 254 (326)
Q Consensus 234 ~YIk~Lq~qVq~Le~~~~~~~ 254 (326)
.||..|+.+|..|+..+..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999998876553
No 22
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=31.34 E-value=17 Score=25.85 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhhcC
Q 020455 234 NYVQFLQNQVEFLSMKLASV 253 (326)
Q Consensus 234 ~YIk~Lq~qVq~Le~~~~~~ 253 (326)
.||..|+.+|..|+..+..+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46666667666666665543
No 23
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=29.48 E-value=30 Score=24.78 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhhhcC
Q 020455 234 NYVQFLQNQVEFLSMKLASV 253 (326)
Q Consensus 234 ~YIk~Lq~qVq~Le~~~~~~ 253 (326)
.||..|+.+|..|+.++..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L 41 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTL 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888776544
No 24
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=28.23 E-value=31 Score=25.08 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCC
Q 020455 233 INYVQFLQNQVEFLSMKLASVN 254 (326)
Q Consensus 233 I~YIk~Lq~qVq~Le~~~~~~~ 254 (326)
-.||..|+.+|..||..+..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999998776543
No 25
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=26.61 E-value=49 Score=24.07 Aligned_cols=26 Identities=19% Similarity=0.483 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020455 196 LAERVRREKISERMKILQKLVPGCDK 221 (326)
Q Consensus 196 laERrRRekINer~~~LqsLVP~~~K 221 (326)
.++|-+|...++-+..|+.+.|..++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57899999999999999999998766
No 26
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=23.45 E-value=49 Score=24.30 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCc
Q 020455 234 NYVQFLQNQVEFLSMKLASVNPM 256 (326)
Q Consensus 234 ~YIk~Lq~qVq~Le~~~~~~~P~ 256 (326)
.||..|+.+|..||..+..+.|.
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~~ 67 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFPR 67 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCc
Confidence 58999999999999988877663
No 27
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.22 E-value=61 Score=25.41 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcC
Q 020455 229 LDEIINYVQFLQNQVEFLSMKLASV 253 (326)
Q Consensus 229 L~eAI~YIk~Lq~qVq~Le~~~~~~ 253 (326)
++.||+-|.-||..|++|.+++..+
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999887543
No 28
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=22.87 E-value=89 Score=23.30 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCC
Q 020455 234 NYVQFLQNQVEFLSMKLASVNP 255 (326)
Q Consensus 234 ~YIk~Lq~qVq~Le~~~~~~~P 255 (326)
.||+.|+.+|..|+..+..+.+
T Consensus 48 ~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 5899999999999988876554
Done!