BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020456
         (326 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase
           20beta-Hydroxysteroid Dehydrogenase
          Length = 288

 Score = 28.5 bits (62), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 17/75 (22%)

Query: 135 LFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKK 194
           L P+  +L +IDL  ++  C+F               +    ++  V+N+ +    DN  
Sbjct: 54  LSPRFHQLDIIDLQSIRALCDFLR-------------KEYGGLDVLVNNAAIAFQLDNPT 100

Query: 195 P----QKLTLEENFL 205
           P     +LT++ NF+
Sbjct: 101 PFHIQAELTMKTNFM 115


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,194,120
Number of Sequences: 62578
Number of extensions: 359146
Number of successful extensions: 727
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 1
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)