Query 020456
Match_columns 326
No_of_seqs 141 out of 1504
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 02:31:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.7 2.3E-16 5E-21 164.4 15.0 213 47-293 655-907 (1153)
2 PLN03210 Resistant to P. syrin 99.7 8.5E-16 1.9E-20 160.2 14.8 213 38-293 623-883 (1153)
3 PLN00113 leucine-rich repeat r 99.4 5.3E-13 1.1E-17 138.1 8.9 15 7-21 88-102 (968)
4 PLN00113 leucine-rich repeat r 99.4 8.3E-13 1.8E-17 136.6 9.5 86 226-315 281-366 (968)
5 KOG4341 F-box protein containi 99.1 1.5E-12 3.3E-17 116.1 -6.5 224 48-295 189-417 (483)
6 KOG4341 F-box protein containi 98.9 9.9E-12 2.1E-16 111.0 -8.4 226 49-295 138-388 (483)
7 KOG0444 Cytoskeletal regulator 98.7 5.5E-10 1.2E-14 104.7 -3.4 214 45-301 99-312 (1255)
8 PRK15370 E3 ubiquitin-protein 98.6 3.9E-07 8.5E-12 90.7 12.4 204 49-319 199-402 (754)
9 KOG4194 Membrane glycoprotein 98.6 1.3E-08 2.9E-13 94.9 0.6 59 47-112 100-158 (873)
10 KOG4194 Membrane glycoprotein 98.5 2.8E-07 6.1E-12 86.3 8.5 59 48-113 77-135 (873)
11 KOG0444 Cytoskeletal regulator 98.5 3.2E-09 6.9E-14 99.7 -5.0 207 47-294 171-377 (1255)
12 PRK15387 E3 ubiquitin-protein 98.5 2.3E-06 5.1E-11 85.1 14.0 51 136-203 301-351 (788)
13 cd00116 LRR_RI Leucine-rich re 98.5 5.2E-08 1.1E-12 87.9 1.5 224 45-289 47-288 (319)
14 PRK15370 E3 ubiquitin-protein 98.5 4.2E-07 9.1E-12 90.5 7.7 81 48-154 219-299 (754)
15 KOG4658 Apoptotic ATPase [Sign 98.4 4.6E-07 9.9E-12 91.7 7.4 216 47-273 569-847 (889)
16 KOG3207 Beta-tubulin folding c 98.3 1.5E-07 3.2E-12 85.2 1.0 36 76-112 120-155 (505)
17 PRK15387 E3 ubiquitin-protein 98.3 5.1E-06 1.1E-10 82.7 11.8 55 229-290 402-456 (788)
18 PRK15386 type III secretion pr 98.3 4.3E-06 9.3E-11 76.8 10.2 161 75-292 50-213 (426)
19 PRK15386 type III secretion pr 98.2 5.2E-06 1.1E-10 76.2 9.2 66 42-119 45-110 (426)
20 KOG2120 SCF ubiquitin ligase, 98.2 7.2E-08 1.6E-12 83.2 -2.9 39 77-115 234-272 (419)
21 cd00116 LRR_RI Leucine-rich re 98.2 5.6E-07 1.2E-11 81.2 1.5 226 45-289 77-317 (319)
22 KOG2120 SCF ubiquitin ligase, 98.1 3.9E-08 8.4E-13 84.9 -6.3 142 137-292 234-376 (419)
23 KOG3207 Beta-tubulin folding c 98.1 2E-07 4.2E-12 84.4 -3.1 189 48-262 145-333 (505)
24 KOG0618 Serine/threonine phosp 98.1 3.1E-07 6.8E-12 90.0 -2.7 109 159-291 378-488 (1081)
25 KOG1947 Leucine rich repeat pr 98.1 3.3E-07 7.1E-12 87.4 -2.8 139 48-200 187-328 (482)
26 KOG0472 Leucine-rich repeat pr 97.9 7.3E-08 1.6E-12 86.3 -8.8 210 36-289 55-285 (565)
27 KOG4658 Apoptotic ATPase [Sign 97.9 2.7E-05 5.9E-10 79.1 7.2 221 48-293 544-784 (889)
28 KOG1947 Leucine rich repeat pr 97.9 1.1E-06 2.3E-11 83.9 -3.3 123 75-208 186-309 (482)
29 KOG0617 Ras suppressor protein 97.8 7.7E-07 1.7E-11 71.1 -4.2 38 138-180 151-188 (264)
30 KOG0618 Serine/threonine phosp 97.8 2.7E-06 5.9E-11 83.6 -2.2 176 77-289 241-417 (1081)
31 PF14580 LRR_9: Leucine-rich r 97.6 0.00014 2.9E-09 59.6 5.4 38 160-200 109-147 (175)
32 KOG0617 Ras suppressor protein 97.5 1.1E-05 2.3E-10 64.7 -1.4 84 227-315 100-183 (264)
33 PF13855 LRR_8: Leucine rich r 97.5 0.00012 2.6E-09 48.9 3.7 59 49-113 1-59 (61)
34 PF13855 LRR_8: Leucine rich r 97.5 0.00033 7.2E-09 46.7 5.5 58 229-289 1-59 (61)
35 KOG0472 Leucine-rich repeat pr 97.3 2.1E-06 4.5E-11 77.2 -8.4 82 225-311 248-329 (565)
36 KOG2982 Uncharacterized conser 96.7 0.00027 5.9E-09 61.6 -1.1 64 45-113 93-156 (418)
37 KOG4237 Extracellular matrix p 96.5 0.0013 2.8E-08 59.5 1.5 66 49-120 67-132 (498)
38 PF14580 LRR_9: Leucine-rich r 96.4 0.0048 1E-07 50.5 4.6 35 161-200 61-95 (175)
39 KOG3665 ZYG-1-like serine/thre 96.4 0.0013 2.8E-08 65.4 1.0 114 48-178 121-234 (699)
40 KOG3864 Uncharacterized conser 96.2 0.00089 1.9E-08 55.2 -0.8 74 41-117 117-190 (221)
41 PF12799 LRR_4: Leucine Rich r 95.9 0.0099 2.1E-07 36.7 3.2 39 77-119 1-39 (44)
42 KOG3665 ZYG-1-like serine/thre 95.7 0.0046 1E-07 61.5 1.4 36 77-112 122-157 (699)
43 PLN03150 hypothetical protein; 95.3 0.053 1.2E-06 53.8 7.5 107 79-205 420-526 (623)
44 KOG1909 Ran GTPase-activating 95.1 0.00054 1.2E-08 60.8 -6.3 232 45-291 54-310 (382)
45 PLN03150 hypothetical protein; 95.1 0.061 1.3E-06 53.4 7.0 109 50-177 419-528 (623)
46 KOG4237 Extracellular matrix p 94.8 0.0023 5E-08 58.0 -3.3 87 8-112 87-173 (498)
47 PF12799 LRR_4: Leucine Rich r 94.7 0.036 7.8E-07 34.1 2.8 34 255-289 1-34 (44)
48 KOG3864 Uncharacterized conser 94.5 0.0021 4.4E-08 53.1 -4.0 40 228-268 150-189 (221)
49 KOG1259 Nischarin, modulator o 94.3 0.019 4E-07 50.5 1.2 52 138-200 285-336 (490)
50 COG4886 Leucine-rich repeat (L 93.0 0.13 2.9E-06 47.8 4.5 15 99-113 159-173 (394)
51 COG4886 Leucine-rich repeat (L 90.9 0.25 5.4E-06 46.0 3.8 62 50-120 141-202 (394)
52 KOG2739 Leucine-rich acidic nu 90.5 0.15 3.3E-06 43.9 1.8 112 74-208 40-157 (260)
53 PF13504 LRR_7: Leucine rich r 90.3 0.22 4.8E-06 23.8 1.5 11 256-266 2-12 (17)
54 KOG1259 Nischarin, modulator o 90.0 0.086 1.9E-06 46.5 -0.1 57 48-113 283-339 (490)
55 smart00367 LRR_CC Leucine-rich 89.8 0.17 3.7E-06 27.1 1.0 18 76-93 1-18 (26)
56 KOG2739 Leucine-rich acidic nu 88.5 0.27 5.8E-06 42.4 1.8 115 48-177 42-156 (260)
57 KOG1859 Leucine-rich repeat pr 88.1 0.026 5.6E-07 55.3 -5.1 83 225-315 205-289 (1096)
58 KOG0532 Leucine-rich repeat (L 87.4 0.13 2.8E-06 49.2 -0.9 33 256-289 212-244 (722)
59 PF00560 LRR_1: Leucine Rich R 86.9 0.56 1.2E-05 23.9 1.8 17 257-274 2-18 (22)
60 KOG1644 U2-associated snRNP A' 86.6 2.6 5.6E-05 35.3 6.3 63 99-173 60-122 (233)
61 PF13306 LRR_5: Leucine rich r 85.9 3.9 8.5E-05 30.9 7.0 9 102-110 11-19 (129)
62 KOG2123 Uncharacterized conser 83.6 0.057 1.2E-06 47.1 -4.7 9 163-171 40-48 (388)
63 KOG0532 Leucine-rich repeat (L 79.4 0.45 9.7E-06 45.7 -0.8 38 138-180 212-249 (722)
64 PF13306 LRR_5: Leucine rich r 76.8 13 0.00029 27.9 7.0 32 253-287 79-111 (129)
65 KOG2123 Uncharacterized conser 76.5 0.17 3.7E-06 44.2 -4.1 17 161-177 85-101 (388)
66 KOG1644 U2-associated snRNP A' 76.2 4.4 9.4E-05 34.0 4.1 96 44-151 59-154 (233)
67 KOG1909 Ran GTPase-activating 75.0 1.3 2.7E-05 40.1 0.8 153 6-176 151-310 (382)
68 KOG1859 Leucine-rich repeat pr 74.5 0.31 6.6E-06 48.2 -3.4 21 5-25 102-122 (1096)
69 KOG2982 Uncharacterized conser 70.6 1.1 2.3E-05 39.8 -0.7 38 74-112 68-106 (418)
70 KOG0531 Protein phosphatase 1, 50.5 10 0.00022 35.7 1.9 36 74-113 115-150 (414)
71 PF13516 LRR_6: Leucine Rich r 49.9 12 0.00027 19.0 1.4 12 103-114 2-13 (24)
72 KOG0531 Protein phosphatase 1, 44.6 14 0.00029 34.8 1.8 60 45-114 114-173 (414)
73 smart00370 LRR Leucine-rich re 31.5 30 0.00065 17.9 1.1 18 255-273 2-19 (26)
74 smart00369 LRR_TYP Leucine-ric 31.5 30 0.00065 17.9 1.1 18 255-273 2-19 (26)
75 KOG4579 Leucine-rich repeat (L 26.3 8 0.00017 30.5 -2.4 61 225-289 73-133 (177)
76 COG5238 RNA1 Ran GTPase-activa 21.3 22 0.00048 31.4 -0.9 40 75-114 90-131 (388)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=2.3e-16 Score=164.40 Aligned_cols=213 Identities=22% Similarity=0.323 Sum_probs=112.8
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc--
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE-- 124 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-- 124 (326)
.+++|++|++.+|..+..++... ..+++|+.|++++|.++..++.. . ++++|+.|.+++|..++.++....
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si----~~L~~L~~L~L~~c~~L~~Lp~~--i-~l~sL~~L~Lsgc~~L~~~p~~~~nL 727 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSI----QYLNKLEDLDMSRCENLEILPTG--I-NLKSLYRLNLSGCSRLKSFPDISTNI 727 (1153)
T ss_pred cCCcccEEEecCCCCccccchhh----hccCCCCEEeCCCCCCcCccCCc--C-CCCCCCEEeCCCCCCccccccccCCc
Confidence 35667777777666666554433 45666777777777666555432 1 566677777776655543321100
Q ss_pred --cc--c-ccCcCC---------------------------------CCCCCccEEecCCCccccccccccccccccccc
Q 020456 125 --LN--A-DKEHIS---------------------------------PLFPKLSELRLIDLPKLKRFCNFTENIIEMLML 166 (326)
Q Consensus 125 --~~--~-~~~~~~---------------------------------~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L 166 (326)
+. . ....++ ..+++|+.|.+.+|+.+..+|. .+..+++|
T Consensus 728 ~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~---si~~L~~L 804 (1153)
T PLN03210 728 SWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS---SIQNLHKL 804 (1153)
T ss_pred CeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh---hhhCCCCC
Confidence 00 0 000000 0123455555555555555444 44555566
Q ss_pred cEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceec
Q 020456 167 WSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFC 246 (326)
Q Consensus 167 ~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 246 (326)
+.|++++|.+++.++. .+ .+. +|++|++ .+|..+..++.. .++|+.|++.+ ..++.+|
T Consensus 805 ~~L~Ls~C~~L~~LP~-~~--~L~---sL~~L~L-s~c~~L~~~p~~--------------~~nL~~L~Ls~-n~i~~iP 862 (1153)
T PLN03210 805 EHLEIENCINLETLPT-GI--NLE---SLESLDL-SGCSRLRTFPDI--------------STNISDLNLSR-TGIEEVP 862 (1153)
T ss_pred CEEECCCCCCcCeeCC-CC--Ccc---ccCEEEC-CCCCcccccccc--------------ccccCEeECCC-CCCccCh
Confidence 6666666655555422 11 223 5566666 555554433211 12344444443 2333333
Q ss_pred CCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCC
Q 020456 247 LGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDD 293 (326)
Q Consensus 247 ~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~ 293 (326)
.... .+++|+.|.+.+|+.++.+|.....+++|+.+.+++|..+.
T Consensus 863 ~si~--~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 863 WWIE--KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred HHHh--cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 3222 56777888888888887777766667777888888886664
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.66 E-value=8.5e-16 Score=160.18 Aligned_cols=213 Identities=19% Similarity=0.282 Sum_probs=125.5
Q ss_pred hhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcc
Q 020456 38 IQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIE 117 (326)
Q Consensus 38 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 117 (326)
+..+++....+++|+.|+++++..++.++. . ..+++|++|++.+|..+..++.. ++++++|+.|++++|..++
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l----s~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-L----SMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCCc-c----ccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCCCcC
Confidence 334444556688899999988877776543 2 45789999999999888776654 7888999999999998887
Q ss_pred eeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcc--------------
Q 020456 118 EVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSN-------------- 183 (326)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~-------------- 183 (326)
.++... .+++|+.|.+++|..++.++.. .++|+.|++.++. +..++..
T Consensus 696 ~Lp~~i-----------~l~sL~~L~Lsgc~~L~~~p~~------~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~ 757 (1153)
T PLN03210 696 ILPTGI-----------NLKSLYRLNLSGCSRLKSFPDI------STNISWLDLDETA-IEEFPSNLRLENLDELILCEM 757 (1153)
T ss_pred ccCCcC-----------CCCCCCEEeCCCCCCccccccc------cCCcCeeecCCCc-ccccccccccccccccccccc
Confidence 664321 2347777777777766655531 1223333332221 1111000
Q ss_pred --------------hhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCC
Q 020456 184 --------------SVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGN 249 (326)
Q Consensus 184 --------------~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 249 (326)
...... ++|+.|++ .+|..+..++.. ...+++|+.|++.+|++++.+|...
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~---~sL~~L~L-s~n~~l~~lP~s-----------i~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLS---PSLTRLFL-SDIPSLVELPSS-----------IQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred chhhccccccccchhhhhcc---ccchheeC-CCCCCccccChh-----------hhCCCCCCEEECCCCCCcCeeCCCC
Confidence 000011 25555555 555544443222 3344555566666665555555432
Q ss_pred ccccCCcccEEEeccCCccc--------------------cccCCCCCCCCccEEEeccccCCC
Q 020456 250 YALEFPSLEQVVVRQCPKMK--------------------IFSQGVLDTPMLNKVNVTEEEKDD 293 (326)
Q Consensus 250 ~~~~~~~L~~L~i~~c~~l~--------------------~l~~~~~~~~~L~~L~l~~c~~~~ 293 (326)
.+++|++|.+++|..++ .+|..+..+++|+.|++++|..+.
T Consensus 823 ---~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 823 ---NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred ---CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcC
Confidence 34555555555555444 455555567889999999997775
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.40 E-value=5.3e-13 Score=138.06 Aligned_cols=15 Identities=13% Similarity=0.457 Sum_probs=11.4
Q ss_pred CCcCCCCeeEEEecc
Q 020456 7 GIVSTPKLHEVQVTE 21 (326)
Q Consensus 7 ~~~~~~~L~~L~~~~ 21 (326)
.+..+++|+.|++.+
T Consensus 88 ~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 88 AIFRLPYIQTINLSN 102 (968)
T ss_pred HHhCCCCCCEEECCC
Confidence 355788899998883
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.39 E-value=8.3e-13 Score=136.64 Aligned_cols=86 Identities=9% Similarity=-0.057 Sum_probs=49.4
Q ss_pred eeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCccccccCchHH
Q 020456 226 IVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLND 305 (326)
Q Consensus 226 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~ 305 (326)
..+++|++|++.++.....++.... .+++|++|++.++......|..+..+++|+.|++++|.-. ..++..+..+.
T Consensus 281 ~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~~~ 356 (968)
T PLN00113 281 FSLQKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS--GEIPKNLGKHN 356 (968)
T ss_pred hhccCcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc--CcCChHHhCCC
Confidence 3456777777776643333433222 5677888888777655556666667788888888777322 12222222234
Q ss_pred HHHHHHHhhh
Q 020456 306 TIKQLFNEIV 315 (326)
Q Consensus 306 ~l~~l~i~~~ 315 (326)
+|+.+.+++.
T Consensus 357 ~L~~L~Ls~n 366 (968)
T PLN00113 357 NLTVLDLSTN 366 (968)
T ss_pred CCcEEECCCC
Confidence 5555555443
No 5
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.08 E-value=1.5e-12 Score=116.13 Aligned_cols=224 Identities=15% Similarity=0.095 Sum_probs=132.0
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
+++|+.|.+..|+++...-... .+..|++|++|.+++|+.++.-....+.+.+..++++..++|..++.- .+..
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~--la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le----~l~~ 262 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKY--LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE----ALLK 262 (483)
T ss_pred cchhhhhhhcccchhHHHHHHH--HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH----HHHH
Confidence 5555555555555544322110 123456666666666666555333333555555666655565544310 0000
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
+.-..+-+.++++..|..++...... .-..+.+|+.|..++|..+++.....+...+. +|+.|.+ ..|..+
T Consensus 263 ----~~~~~~~i~~lnl~~c~~lTD~~~~~-i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~---~L~~l~l-~~c~~f 333 (483)
T KOG4341|consen 263 ----AAAYCLEILKLNLQHCNQLTDEDLWL-IACGCHALQVLCYSSCTDITDEVLWALGQHCH---NLQVLEL-SGCQQF 333 (483)
T ss_pred ----HhccChHhhccchhhhccccchHHHH-HhhhhhHhhhhcccCCCCCchHHHHHHhcCCC---ceEEEec-cccchh
Confidence 00012345566666776665332110 11235788899999998888887777777777 9999999 999876
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCcccc-----ccCCCCCCCCcc
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKI-----FSQGVLDTPMLN 282 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~-----l~~~~~~~~~L~ 282 (326)
+... +.+-..+.+.|+.+++.+|...+.-........||.|+++.++.|..++. +..+...+..|+
T Consensus 334 sd~~---------ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~ 404 (483)
T KOG4341|consen 334 SDRG---------FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLE 404 (483)
T ss_pred hhhh---------hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccc
Confidence 6542 11113455778888888877655443333334788888888888876654 344445667788
Q ss_pred EEEeccccCCCCc
Q 020456 283 KVNVTEEEKDDDD 295 (326)
Q Consensus 283 ~L~l~~c~~~~~~ 295 (326)
.+.+++|+...+.
T Consensus 405 ~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 405 VLELDNCPLITDA 417 (483)
T ss_pred eeeecCCCCchHH
Confidence 8888888777654
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.91 E-value=9.9e-12 Score=111.00 Aligned_cols=226 Identities=16% Similarity=0.130 Sum_probs=138.0
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
.-|+.|.+.||..+..-.... ....+||+++|.+.+|.++++....++...++.|++|.+..|..+++..- .
T Consensus 138 g~lk~LSlrG~r~v~~sslrt--~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L-k----- 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRT--FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL-K----- 209 (483)
T ss_pred cccccccccccccCCcchhhH--HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH-H-----
Confidence 458999999988876422211 23568999999999999988887777788899999999999887765411 1
Q ss_pred cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccC------------------
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTT------------------ 190 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~------------------ 190 (326)
.....+|+|+.|++++|+.+..--. ......+..++.+...+|.....-....+...+.
T Consensus 210 --~la~gC~kL~~lNlSwc~qi~~~gv-~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 210 --YLAEGCRKLKYLNLSWCPQISGNGV-QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred --HHHHhhhhHHHhhhccCchhhcCcc-hHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH
Confidence 1223567999999999987765100 0012233445555555555444332222222222
Q ss_pred -----CCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccC
Q 020456 191 -----DNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQC 265 (326)
Q Consensus 191 -----~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 265 (326)
....|+.|.. .+|..++..+-. .-....++|+.|.+.+|.+++..........++.|+.+.+.+|
T Consensus 287 ~~i~~~c~~lq~l~~-s~~t~~~d~~l~---------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 287 WLIACGCHALQVLCY-SSCTDITDEVLW---------ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred HHHhhhhhHhhhhcc-cCCCCCchHHHH---------HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 0003444444 444433322111 0022346788888888887776655444457788888888777
Q ss_pred Ccccc--ccCCCCCCCCccEEEeccccCCCCc
Q 020456 266 PKMKI--FSQGVLDTPMLNKVNVTEEEKDDDD 295 (326)
Q Consensus 266 ~~l~~--l~~~~~~~~~L~~L~l~~c~~~~~~ 295 (326)
.-+.. +......++.|+++.++.|+.++++
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhh
Confidence 75543 3334446888888888888777766
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.73 E-value=5.5e-10 Score=104.73 Aligned_cols=214 Identities=18% Similarity=0.163 Sum_probs=107.2
Q ss_pred cccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 124 (326)
+..+..|..|+++. ..+++.+.+. ..-.|+-.|.+++. ++..++ ...+-++..|-.|++++. .++.+++..+
T Consensus 99 iF~l~dLt~lDLSh-NqL~EvP~~L----E~AKn~iVLNLS~N-~IetIP-n~lfinLtDLLfLDLS~N-rLe~LPPQ~R 170 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSH-NQLREVPTNL----EYAKNSIVLNLSYN-NIETIP-NSLFINLTDLLFLDLSNN-RLEMLPPQIR 170 (1255)
T ss_pred hcccccceeeecch-hhhhhcchhh----hhhcCcEEEEcccC-ccccCC-chHHHhhHhHhhhccccc-hhhhcCHHHH
Confidence 44466777777774 4456555444 22356777777775 344443 344667777777777763 4555544322
Q ss_pred cccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC
Q 020456 125 LNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
.+..|++|.+++-| |..+.-. .+.++++|+.|++++..+-.+-+|.++- .+. +|+.+++ +|
T Consensus 171 ----------RL~~LqtL~Ls~NP-L~hfQLr--QLPsmtsL~vLhms~TqRTl~N~Ptsld-~l~---NL~dvDl--S~ 231 (1255)
T KOG0444|consen 171 ----------RLSMLQTLKLSNNP-LNHFQLR--QLPSMTSLSVLHMSNTQRTLDNIPTSLD-DLH---NLRDVDL--SE 231 (1255)
T ss_pred ----------HHhhhhhhhcCCCh-hhHHHHh--cCccchhhhhhhcccccchhhcCCCchh-hhh---hhhhccc--cc
Confidence 12366666666544 2211100 2233555666666654433332233332 222 6666665 55
Q ss_pred cccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEE
Q 020456 205 LLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKV 284 (326)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L 284 (326)
+++..++.- +..+++|++|++++ ..++.+..... .+.+|++|.++. ..++.+|.+++.++.|++|
T Consensus 232 N~Lp~vPec-----------ly~l~~LrrLNLS~-N~iteL~~~~~--~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 232 NNLPIVPEC-----------LYKLRNLRRLNLSG-NKITELNMTEG--EWENLETLNLSR-NQLTVLPDAVCKLTKLTKL 296 (1255)
T ss_pred cCCCcchHH-----------HhhhhhhheeccCc-CceeeeeccHH--HHhhhhhhcccc-chhccchHHHhhhHHHHHH
Confidence 555443211 33455666666665 44444443322 444555555533 3344455555555555555
Q ss_pred EeccccCCCCccccccC
Q 020456 285 NVTEEEKDDDDEGCWEG 301 (326)
Q Consensus 285 ~l~~c~~~~~~~~~~~~ 301 (326)
++.+. ++.-+.++.+.
T Consensus 297 y~n~N-kL~FeGiPSGI 312 (1255)
T KOG0444|consen 297 YANNN-KLTFEGIPSGI 312 (1255)
T ss_pred HhccC-cccccCCccch
Confidence 55433 23333444444
No 8
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.61 E-value=3.9e-07 Score=90.70 Aligned_cols=204 Identities=16% Similarity=0.163 Sum_probs=116.5
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
++|+.|++.++ ++..++. ..+++|++|++++| +++.++.. + .++|+.|++++|. +..++..
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~------~l~~nL~~L~Ls~N-~LtsLP~~-l---~~~L~~L~Ls~N~-L~~LP~~------ 259 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPE------NLQGNIKTLYANSN-QLTSIPAT-L---PDTIQEMELSINR-ITELPER------ 259 (754)
T ss_pred cCCcEEEecCC-CCCcCCh------hhccCCCEEECCCC-ccccCChh-h---hccccEEECcCCc-cCcCChh------
Confidence 46777777654 4454332 23467888888776 35554322 1 3467788877764 3333210
Q ss_pred cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccc
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLAD 208 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~ 208 (326)
.+.+|+.|++++ .+++.++. .+ +++|+.|++++| +++.++ ..+. . +|+.|++ .++. ++
T Consensus 260 ------l~s~L~~L~Ls~-N~L~~LP~---~l--~~sL~~L~Ls~N-~Lt~LP-~~lp---~---sL~~L~L-s~N~-Lt 317 (754)
T PRK15370 260 ------LPSALQSLDLFH-NKISCLPE---NL--PEELRYLSVYDN-SIRTLP-AHLP---S---GITHLNV-QSNS-LT 317 (754)
T ss_pred ------HhCCCCEEECcC-CccCcccc---cc--CCCCcEEECCCC-ccccCc-ccch---h---hHHHHHh-cCCc-cc
Confidence 123677888764 46666654 22 257888888775 555552 2222 1 5777777 5543 33
Q ss_pred eeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecc
Q 020456 209 QVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTE 288 (326)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~ 288 (326)
.+... ..++|+.|++.++ .++.++.. -.++|+.|+++++ .++.+|..+ .++|++|++++
T Consensus 318 ~LP~~-------------l~~sL~~L~Ls~N-~Lt~LP~~----l~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~ 376 (754)
T PRK15370 318 ALPET-------------LPPGLKTLEAGEN-ALTSLPAS----LPPELQVLDVSKN-QITVLPETL--PPTITTLDVSR 376 (754)
T ss_pred cCCcc-------------ccccceeccccCC-ccccCChh----hcCcccEEECCCC-CCCcCChhh--cCCcCEEECCC
Confidence 32111 2257888888776 35555532 2358888888776 456677654 46888888888
Q ss_pred ccCCCCccccccCchHHHHHHHHHhhhhhhh
Q 020456 289 EEKDDDDEGCWEGNLNDTIKQLFNEIVSINE 319 (326)
Q Consensus 289 c~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~ 319 (326)
|. +. .++.. ...+|+.+.+.+..+..
T Consensus 377 N~-Lt--~LP~~--l~~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 377 NA-LT--NLPEN--LPAALQIMQASRNNLVR 402 (754)
T ss_pred Cc-CC--CCCHh--HHHHHHHHhhccCCccc
Confidence 73 21 22222 23467777776655443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.57 E-value=1.3e-08 Score=94.87 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=31.0
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEcc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRN 112 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 112 (326)
.+|+|+++++.+ ..+..||... ....+|+.|.+... .++.+.... ++-++.|+.|+++.
T Consensus 100 nl~nLq~v~l~~-N~Lt~IP~f~----~~sghl~~L~L~~N-~I~sv~se~-L~~l~alrslDLSr 158 (873)
T KOG4194|consen 100 NLPNLQEVNLNK-NELTRIPRFG----HESGHLEKLDLRHN-LISSVTSEE-LSALPALRSLDLSR 158 (873)
T ss_pred cCCcceeeeecc-chhhhccccc----ccccceeEEeeecc-ccccccHHH-HHhHhhhhhhhhhh
Confidence 366777777653 3345555433 23355666666654 233333322 45556666666654
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.54 E-value=2.8e-07 Score=86.29 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=34.8
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
++.=++|++++ ..+.++-... ...++||+++++.+. .++.++.. .....+|+.|++.+.
T Consensus 77 p~~t~~Ldlsn-Nkl~~id~~~---f~nl~nLq~v~l~~N-~Lt~IP~f--~~~sghl~~L~L~~N 135 (873)
T KOG4194|consen 77 PSQTQTLDLSN-NKLSHIDFEF---FYNLPNLQEVNLNKN-ELTRIPRF--GHESGHLEKLDLRHN 135 (873)
T ss_pred ccceeeeeccc-cccccCcHHH---HhcCCcceeeeeccc-hhhhcccc--cccccceeEEeeecc
Confidence 45556788875 3344422111 145688888888876 35555443 334456888888764
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.52 E-value=3.2e-09 Score=99.73 Aligned_cols=207 Identities=18% Similarity=0.151 Sum_probs=134.1
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
-+.+|++|.+++.|-... -..+ + -+..+|+.|++++.+.-..-+|.+ +..+.||+.++++. ..+..++.-
T Consensus 171 RL~~LqtL~Ls~NPL~hf-QLrQ-L--PsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~-N~Lp~vPec---- 240 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHF-QLRQ-L--PSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSE-NNLPIVPEC---- 240 (1255)
T ss_pred HHhhhhhhhcCCChhhHH-HHhc-C--ccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccc-cCCCcchHH----
Confidence 366788888877664221 0011 2 244567777777765443333333 67788888888875 334332210
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
.-..++|+.|++++ .+++.+.. ....+.+|++|+++. +.++.+ |..+.+ ++ .|+.|.. .+-.-
T Consensus 241 ------ly~l~~LrrLNLS~-N~iteL~~---~~~~W~~lEtLNlSr-NQLt~L-P~avcK-L~---kL~kLy~-n~NkL 303 (1255)
T KOG0444|consen 241 ------LYKLRNLRRLNLSG-NKITELNM---TEGEWENLETLNLSR-NQLTVL-PDAVCK-LT---KLTKLYA-NNNKL 303 (1255)
T ss_pred ------HhhhhhhheeccCc-Cceeeeec---cHHHHhhhhhhcccc-chhccc-hHHHhh-hH---HHHHHHh-ccCcc
Confidence 01246888899887 45666655 556788999999987 467777 444432 33 6777776 43331
Q ss_pred cceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEe
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNV 286 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l 286 (326)
--+-.+++ +.-+.+|+.+...+ .+|+-+|.+.+ .|+.|++|.+ +|..+-.+|+++..++.|+.|++
T Consensus 304 ~FeGiPSG----------IGKL~~Levf~aan-N~LElVPEglc--RC~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 304 TFEGIPSG----------IGKLIQLEVFHAAN-NKLELVPEGLC--RCVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred cccCCccc----------hhhhhhhHHHHhhc-cccccCchhhh--hhHHHHHhcc-cccceeechhhhhhcCCcceeec
Confidence 11111121 44566777777766 67888888777 8999999988 78888889999988999999999
Q ss_pred ccccCCCC
Q 020456 287 TEEEKDDD 294 (326)
Q Consensus 287 ~~c~~~~~ 294 (326)
...+.+..
T Consensus 370 reNpnLVM 377 (1255)
T KOG0444|consen 370 RENPNLVM 377 (1255)
T ss_pred cCCcCccC
Confidence 99887653
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.49 E-value=2.3e-06 Score=85.08 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=25.3
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEeccc
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEEN 203 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~ 203 (326)
+++|+.|++++. +++.++.. ..+|+.|.+++| +++.++. . .. +|++|++ .+
T Consensus 301 p~~L~~LdLS~N-~L~~Lp~l------p~~L~~L~Ls~N-~L~~LP~--l---p~---~Lq~LdL-S~ 351 (788)
T PRK15387 301 PPGLQELSVSDN-QLASLPAL------PSELCKLWAYNN-QLTSLPT--L---PS---GLQELSV-SD 351 (788)
T ss_pred ccccceeECCCC-ccccCCCC------cccccccccccC-ccccccc--c---cc---ccceEec-CC
Confidence 356777777664 45444421 234555666553 3443321 1 12 5666666 54
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.46 E-value=5.2e-08 Score=87.90 Aligned_cols=224 Identities=15% Similarity=0.004 Sum_probs=116.2
Q ss_pred cccCCCccEEEcccCCCc--ccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCC---CCCEEEEccCcCccee
Q 020456 45 MIGFCDIEYLQLSDFPCL--KEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLN---NLRCLEVRNCDSIEEV 119 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l--~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~---~L~~L~l~~c~~l~~l 119 (326)
+...++|+.|.+.++..- ...|.........+++|++|++++|..- ...+. .+..+. +|++|++++|..-...
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~ 124 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG-PDGCG-VLESLLRSSSLQELKLNNNGLGDRG 124 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC-hhHHH-HHHHHhccCcccEEEeeCCccchHH
Confidence 445777888888765432 1111110000123678999999888643 22222 133344 4999999887532110
Q ss_pred ccccccccccCcCCCCC-CCccEEecCCCcccc----ccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCC
Q 020456 120 LHLEELNADKEHISPLF-PKLSELRLIDLPKLK----RFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKK 194 (326)
Q Consensus 120 ~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~----~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~ 194 (326)
... .......+ ++|+.|++.+|.--. .+.. .+..+++|++|++++|. +.......+...+...++
T Consensus 125 -----~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~---~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~ 194 (319)
T cd00116 125 -----LRL-LAKGLKDLPPALEKLVLGRNRLEGASCEALAK---ALRANRDLKELNLANNG-IGDAGIRALAEGLKANCN 194 (319)
T ss_pred -----HHH-HHHHHHhCCCCceEEEcCCCcCCchHHHHHHH---HHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCC
Confidence 000 00001122 688999998875221 1111 34455788999998863 432211122211212238
Q ss_pred CceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCC----ccccCCcccEEEeccCCcc--
Q 020456 195 PQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGN----YALEFPSLEQVVVRQCPKM-- 268 (326)
Q Consensus 195 L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~----~~~~~~~L~~L~i~~c~~l-- 268 (326)
|++|++ .+|.--.... . ........+++|++|++.+|+ ++...... .....+.|++|++.+|.--
T Consensus 195 L~~L~L-~~n~i~~~~~-~------~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~ 265 (319)
T cd00116 195 LEVLDL-NNNGLTDEGA-S------ALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDD 265 (319)
T ss_pred CCEEec-cCCccChHHH-H------HHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcH
Confidence 999998 8775221100 0 011113356789999999875 33211100 0002468999999887532
Q ss_pred --ccccCCCCCCCCccEEEeccc
Q 020456 269 --KIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 269 --~~l~~~~~~~~~L~~L~l~~c 289 (326)
..+.......+.|++++++++
T Consensus 266 ~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 266 GAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHHHHhcCCCccEEECCCC
Confidence 223333334578999999887
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.45 E-value=4.2e-07 Score=90.48 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=48.3
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
+++|++|++.++ .+..++. ...++|+.|++++|. +..++. .+ ..+|+.|+++++ .+..++..
T Consensus 219 ~~nL~~L~Ls~N-~LtsLP~------~l~~~L~~L~Ls~N~-L~~LP~-~l---~s~L~~L~Ls~N-~L~~LP~~----- 280 (754)
T PRK15370 219 QGNIKTLYANSN-QLTSIPA------TLPDTIQEMELSINR-ITELPE-RL---PSALQSLDLFHN-KISCLPEN----- 280 (754)
T ss_pred ccCCCEEECCCC-ccccCCh------hhhccccEEECcCCc-cCcCCh-hH---hCCCCEEECcCC-ccCccccc-----
Confidence 468999998865 3554432 233678888888874 555543 22 357888888754 45443210
Q ss_pred ccCcCCCCCCCccEEecCCCccccccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFC 154 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~ 154 (326)
.+++|+.|+++++ +++.++
T Consensus 281 -------l~~sL~~L~Ls~N-~Lt~LP 299 (754)
T PRK15370 281 -------LPEELRYLSVYDN-SIRTLP 299 (754)
T ss_pred -------cCCCCcEEECCCC-ccccCc
Confidence 1236777777664 455544
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.43 E-value=4.6e-07 Score=91.65 Aligned_cols=216 Identities=18% Similarity=0.207 Sum_probs=121.0
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc-c
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE-L 125 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~ 125 (326)
.+|.|.+|+++++..+.++|... +.+-+||+|+++++. +..+|.. +++++.|.+|++.....++.++.... +
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I----~~Li~LryL~L~~t~-I~~LP~~--l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L 641 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSI----GELVHLRYLDLSDTG-ISHLPSG--LGNLKKLIYLNLEVTGRLESIPGILLEL 641 (889)
T ss_pred hCcceEEEECCCCCccCcCChHH----hhhhhhhcccccCCC-ccccchH--HHHHHhhheeccccccccccccchhhhc
Confidence 48899999999988888776655 678899999888874 5555443 67777777777766554332211000 0
Q ss_pred c---------cc--cC----cCCCCCCCccEEecCCCcc-----------cc----cc-------ccccccccccccccE
Q 020456 126 N---------AD--KE----HISPLFPKLSELRLIDLPK-----------LK----RF-------CNFTENIIEMLMLWS 168 (326)
Q Consensus 126 ~---------~~--~~----~~~~~~~~L~~L~l~~c~~-----------L~----~~-------~~~~~~~~~~~~L~~ 168 (326)
. .. .. .....+.+|+.+.+..... +. .+ ......+..+.+|++
T Consensus 642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~ 721 (889)
T KOG4658|consen 642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEE 721 (889)
T ss_pred ccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcce
Confidence 0 00 00 0001122333332221111 00 00 000014456677888
Q ss_pred EeEecCCCCCccCcc-----------hhhh----ccC---------CCCCCceEEecccCcccceeccccccccCccccc
Q 020456 169 LTIENCPNMETFVSN-----------SVVH----VTT---------DNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKG 224 (326)
Q Consensus 169 L~l~~C~~l~~~~~~-----------~~~~----~~~---------~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~ 224 (326)
|.|.+|......... .... .+. -.|+|+.|.+ .+|+.++++.+.......... .
T Consensus 722 L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l-~~~~~~e~~i~~~k~~~~l~~-~ 799 (889)
T KOG4658|consen 722 LSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSL-VSCRLLEDIIPKLKALLELKE-L 799 (889)
T ss_pred EEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEE-ecccccccCCCHHHHhhhccc-E
Confidence 888887664321100 0000 000 0169999999 999999888765321111111 1
Q ss_pred eeeeccccee-ecccCCCcceecCCCccccCCcccEEEeccCCccccccC
Q 020456 225 CIVFERMNYL-TLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ 273 (326)
Q Consensus 225 ~~~l~~L~~L-~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~ 273 (326)
...|.++..+ .+.+.+.+..+..... .++.|+.+.+.+||+++.+|.
T Consensus 800 i~~f~~~~~l~~~~~l~~l~~i~~~~l--~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 800 ILPFNKLEGLRMLCSLGGLPQLYWLPL--SFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred EecccccccceeeecCCCCceeEeccc--CccchhheehhcCcccccCcc
Confidence 4456677777 4777777776665433 666799999999999997654
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.5e-07 Score=85.17 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=15.4
Q ss_pred CCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEcc
Q 020456 76 FNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRN 112 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 112 (326)
+.+|++..+.+|+ +...+.....+.|++++.|+++.
T Consensus 120 ~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~ 155 (505)
T KOG3207|consen 120 LKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSR 155 (505)
T ss_pred HHhhhheeecCcc-ccccchhhhhhhCCcceeecchh
Confidence 4445555555543 22222212244455555555543
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.32 E-value=5.1e-06 Score=82.74 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=39.4
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
++|+.|++.+. .++.+|. ...+|+.|++++ ..++.+|..+..+++|+.|++++++
T Consensus 402 s~L~~LdLS~N-~LssIP~-----l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 402 SELKELMVSGN-RLTSLPM-----LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCEEEccCC-cCCCCCc-----chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 56888888875 3565553 223677787765 4577788877788899999998873
No 18
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.31 E-value=4.3e-06 Score=76.78 Aligned_cols=161 Identities=14% Similarity=0.187 Sum_probs=84.0
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFC 154 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 154 (326)
.+.++++|+|++| .++.++ . --.+|++|.+.+|..++.++.. ..++|+.|.+.+|..+..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP-~----LP~sLtsL~Lsnc~nLtsLP~~------------LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP-V----LPNELTEITIENCNNLTTLPGS------------IPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC-C----CCCCCcEEEccCCCCcccCCch------------hhhhhhheEccCcccccccc
Confidence 3577788888887 565554 1 1245888888777776544310 12477778887777676555
Q ss_pred cccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeee-cccce
Q 020456 155 NFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVF-ERMNY 233 (326)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l-~~L~~ 233 (326)
+.|+.|.+. |.....+ ..+. . +|++|.+ .+........ . ...+ ++|++
T Consensus 112 ---------~sLe~L~L~-~n~~~~L--~~LP---s---sLk~L~I-~~~n~~~~~~-l-----------p~~LPsSLk~ 160 (426)
T PRK15386 112 ---------ESVRSLEIK-GSATDSI--KNVP---N---GLTSLSI-NSYNPENQAR-I-----------DNLISPSLKT 160 (426)
T ss_pred ---------cccceEEeC-CCCCccc--ccCc---c---hHhheec-cccccccccc-c-----------ccccCCcccE
Confidence 345666664 2222221 1111 1 5666766 4433111100 0 0123 47888
Q ss_pred eecccCCCcceecCCCccccCCcccEEEeccCC--ccccccCCCCCCCCccEEEeccccCC
Q 020456 234 LTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCP--KMKIFSQGVLDTPMLNKVNVTEEEKD 292 (326)
Q Consensus 234 L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~--~l~~l~~~~~~~~~L~~L~l~~c~~~ 292 (326)
|.+.+|..+. .|.. .+ .+|+.|.+..+. .+. ++... -.+++ .+.+.+|.+.
T Consensus 161 L~Is~c~~i~-LP~~-LP---~SLk~L~ls~n~~~sLe-I~~~s-LP~nl-~L~f~n~lkL 213 (426)
T PRK15386 161 LSLTGCSNII-LPEK-LP---ESLQSITLHIEQKTTWN-ISFEG-FPDGL-DIDLQNSVLL 213 (426)
T ss_pred EEecCCCccc-Cccc-cc---ccCcEEEeccccccccc-Ccccc-ccccc-Eechhhhccc
Confidence 8888887553 2221 11 378888876532 222 11111 12455 6777766443
No 19
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=5.2e-06 Score=76.22 Aligned_cols=66 Identities=21% Similarity=0.368 Sum_probs=48.4
Q ss_pred hhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCccee
Q 020456 42 YEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEV 119 (326)
Q Consensus 42 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 119 (326)
+..+..+.+++.|++++| .++.++. +| ++|++|.+.+|.+++.++.. + .++|++|.+.+|..+..+
T Consensus 45 ~~r~~~~~~l~~L~Is~c-~L~sLP~---LP----~sLtsL~Lsnc~nLtsLP~~--L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 45 TPQIEEARASGRLYIKDC-DIESLPV---LP----NELTEITIENCNNLTTLPGS--I--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHHHHhcCCCEEEeCCC-CCcccCC---CC----CCCcEEEccCCCCcccCCch--h--hhhhhheEccCccccccc
Confidence 334556789999999988 6676541 33 57999999999988665432 2 368999999999777544
No 20
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=7.2e-08 Score=83.25 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=22.5
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcC
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDS 115 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 115 (326)
.+|+.|+|+.|..++.....-++..|..|.+|.++.|..
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 456666666666555544444555666666666666543
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.18 E-value=5.6e-07 Score=81.19 Aligned_cols=226 Identities=17% Similarity=0.093 Sum_probs=121.5
Q ss_pred cccCCCccEEEcccCCCcccccccC-CCCCCCCCCccEEEEecCCCCCcCCch---hHHhhC-CCCCEEEEccCcCccee
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQ-ALPVSFFNNLEELEVDDCTNMSSAIPA---NLLRCL-NNLRCLEVRNCDSIEEV 119 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~-~l~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l-~~L~~L~l~~c~~l~~l 119 (326)
+..+++|+.|++++++......... .+. .. ++|++|++++|. +.+.... ..+..+ ++|++|++++|..-...
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLL-RS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHh-cc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 3448899999999877643211111 011 22 669999999985 4421111 124456 89999999998633110
Q ss_pred ccccccccccCcCCCCCCCccEEecCCCccccc--cccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCce
Q 020456 120 LHLEELNADKEHISPLFPKLSELRLIDLPKLKR--FCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQK 197 (326)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~ 197 (326)
.. ... ......++|++|++.++. +.. +......+..+++|++|++++|. +.......+.......++|++
T Consensus 154 ~~--~~~----~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 154 CE--ALA----KALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEV 225 (319)
T ss_pred HH--HHH----HHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCE
Confidence 00 000 001123589999998864 321 11000023445799999999984 443322222222222348999
Q ss_pred EEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCC---CccccCCcccEEEeccCCccc----c
Q 020456 198 LTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLG---NYALEFPSLEQVVVRQCPKMK----I 270 (326)
Q Consensus 198 L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~~~~L~~L~i~~c~~l~----~ 270 (326)
|++ .+|.--. ..... .........++|++|++.+|. ++..... .....+++|+++.++++.--+ .
T Consensus 226 L~l-s~n~l~~-~~~~~-----l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 226 LNL-GDNNLTD-AGAAA-----LASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred Eec-CCCcCch-HHHHH-----HHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 999 8876322 10000 000000123789999999984 3211100 011145789999997765332 1
Q ss_pred ccCCCCCC-CCccEEEeccc
Q 020456 271 FSQGVLDT-PMLNKVNVTEE 289 (326)
Q Consensus 271 l~~~~~~~-~~L~~L~l~~c 289 (326)
+....... +.|+++++.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 298 LAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHhhcCCchhhcccCCC
Confidence 33333333 68888887653
No 22
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.9e-08 Score=84.89 Aligned_cols=142 Identities=16% Similarity=0.109 Sum_probs=80.1
Q ss_pred CCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceecccccc
Q 020456 137 PKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDE 216 (326)
Q Consensus 137 ~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~ 216 (326)
.+|+.|+|+.|.++++..... -+.+++.|++|+++.|.-.+......+++.- ++|+.|++ ++|..--... +
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~l-l~~scs~L~~LNlsWc~l~~~~Vtv~V~his---e~l~~LNl-sG~rrnl~~s-h--- 304 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQL-LLSSCSRLDELNLSWCFLFTEKVTVAVAHIS---ETLTQLNL-SGYRRNLQKS-H--- 304 (419)
T ss_pred ccceeeccccccccchhHHHH-HHHhhhhHhhcCchHhhccchhhhHHHhhhc---hhhhhhhh-hhhHhhhhhh-H---
Confidence 367777777777766543321 3455677777777777555444222222222 26667777 6664321100 0
Q ss_pred ccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCcccc-ccCCCCCCCCccEEEeccccCC
Q 020456 217 KVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKI-FSQGVLDTPMLNKVNVTEEEKD 292 (326)
Q Consensus 217 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~-l~~~~~~~~~L~~L~l~~c~~~ 292 (326)
...-...+|+|..|++++|..++.-.... ...++.|++|.++.|-.+.- ---.+...|+|.+|++.+|-..
T Consensus 305 ----~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 305 ----LSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred ----HHHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 00002345778888888887766522211 23678888888888876532 0012335788888888888544
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2e-07 Score=84.38 Aligned_cols=189 Identities=19% Similarity=0.186 Sum_probs=81.3
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
|++.+.|+++..-.. -|....-.+..+|+|+.|.++... +.....+.....+++|+.|.++.|.--. -
T Consensus 145 ~~~v~~LdLS~NL~~--nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls~-k-------- 212 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFH--NWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLSW-K-------- 212 (505)
T ss_pred CCcceeecchhhhHH--hHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccCCCCH-H--------
Confidence 666666666532211 132210112456666666666542 2222222223345666666666654210 0
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
....+...||+|+.|.+..-..+..... ....++.|++|++++- ++.++........++ .|+.|.+ ..|.-
T Consensus 213 ~V~~~~~~fPsl~~L~L~~N~~~~~~~~---~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~---~L~~Lnl-s~tgi- 283 (505)
T KOG3207|consen 213 DVQWILLTFPSLEVLYLEANEIILIKAT---STKILQTLQELDLSNN-NLIDFDQGYKVGTLP---GLNQLNL-SSTGI- 283 (505)
T ss_pred HHHHHHHhCCcHHHhhhhcccccceecc---hhhhhhHHhhccccCC-ccccccccccccccc---chhhhhc-cccCc-
Confidence 0011223456666666655432211111 2344566667777663 333442222223333 6666666 55542
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEe
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVV 262 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i 262 (326)
.++...+ .+ .......|++|++|++.. .++..++.-..-...++|+.|.+
T Consensus 284 ~si~~~d---~~-s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 284 ASIAEPD---VE-SLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred chhcCCC---cc-chhhhcccccceeeeccc-Cccccccccchhhccchhhhhhc
Confidence 2221111 00 111134567777777665 33333332222223445555544
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.07 E-value=3.1e-07 Score=90.01 Aligned_cols=109 Identities=15% Similarity=0.260 Sum_probs=67.8
Q ss_pred cccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeeccc
Q 020456 159 NIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDC 238 (326)
Q Consensus 159 ~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 238 (326)
-+..+++|+-|++++ .++..+ |.+-...+. .|++|.+ ++ +.++.++.. +..++.|++|...+
T Consensus 378 ~l~~~~hLKVLhLsy-NrL~~f-pas~~~kle---~LeeL~L-SG-NkL~~Lp~t-----------va~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSY-NRLNSF-PASKLRKLE---ELEELNL-SG-NKLTTLPDT-----------VANLGRLHTLRAHS 439 (1081)
T ss_pred hhccccceeeeeecc-cccccC-CHHHHhchH---HhHHHhc-cc-chhhhhhHH-----------HHhhhhhHHHhhcC
Confidence 455677888888876 456665 444333444 6777776 43 335444322 44556677776554
Q ss_pred CCCcceecCCCccccCCcccEEEeccCCcccc--ccCCCCCCCCccEEEeccccC
Q 020456 239 LPSLTSFCLGNYALEFPSLEQVVVRQCPKMKI--FSQGVLDTPMLNKVNVTEEEK 291 (326)
Q Consensus 239 c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~--l~~~~~~~~~L~~L~l~~c~~ 291 (326)
..+..+|. .. .++.|+.+++ +|..+.. +|... ..|.|++|+++++.+
T Consensus 440 -N~l~~fPe-~~--~l~qL~~lDl-S~N~L~~~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 440 -NQLLSFPE-LA--QLPQLKVLDL-SCNNLSEVTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred -Cceeechh-hh--hcCcceEEec-ccchhhhhhhhhhC-CCcccceeeccCCcc
Confidence 55677773 22 6788888888 6777765 44433 238999999988754
No 25
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.06 E-value=3.3e-07 Score=87.40 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=68.1
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecC-CCCCcCC--chhHHhhCCCCCEEEEccCcCcceeccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDC-TNMSSAI--PANLLRCLNNLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c-~~l~~~~--~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 124 (326)
+++|+.|.+.+|..+...+... + ...+++|+.|++..| ....... .......+++|+.|++..|..+.+. +
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~----~ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDA-L-ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI----G 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHH-H-HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch----h
Confidence 5666666666666655422111 1 134566677766662 2222211 1123445566666666666543322 1
Q ss_pred cccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEe
Q 020456 125 LNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTL 200 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i 200 (326)
+. .+....|+|+.|.+..|..++.-.... ....+++|++|++++|..+++.....+...++ +|+.|.+
T Consensus 261 l~----~l~~~c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~---~l~~l~~ 328 (482)
T KOG1947|consen 261 LS----ALASRCPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHGLTDSGLEALLKNCP---NLRELKL 328 (482)
T ss_pred HH----HHHhhCCCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCccchHHHHHHHHHhCc---chhhhhh
Confidence 00 011124577777766666543111000 23445667777777777765543334444454 5555544
No 26
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.94 E-value=7.3e-08 Score=86.34 Aligned_cols=210 Identities=14% Similarity=0.187 Sum_probs=119.7
Q ss_pred hhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcC
Q 020456 36 STIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDS 115 (326)
Q Consensus 36 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 115 (326)
+......+++..++.|.+|.+.+... ...+... +.+..+++|.++.. ++..++.. +..+.+|++++++...
T Consensus 55 N~l~~l~~dl~nL~~l~vl~~~~n~l-~~lp~ai----g~l~~l~~l~vs~n-~ls~lp~~--i~s~~~l~~l~~s~n~- 125 (565)
T KOG0472|consen 55 NDLEVLREDLKNLACLTVLNVHDNKL-SQLPAAI----GELEALKSLNVSHN-KLSELPEQ--IGSLISLVKLDCSSNE- 125 (565)
T ss_pred CchhhccHhhhcccceeEEEeccchh-hhCCHHH----HHHHHHHHhhcccc-hHhhccHH--Hhhhhhhhhhhccccc-
Confidence 34455666677788888888876443 3333332 56677888888775 45555554 7778888888877643
Q ss_pred cceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCC
Q 020456 116 IEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKP 195 (326)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L 195 (326)
+.++++..+.. -.|..++..+ .++.++|. .+..+.+|..+.+.+ .+++.+++..++ +. +|
T Consensus 126 ~~el~~~i~~~----------~~l~dl~~~~-N~i~slp~---~~~~~~~l~~l~~~~-n~l~~l~~~~i~--m~---~L 185 (565)
T KOG0472|consen 126 LKELPDSIGRL----------LDLEDLDATN-NQISSLPE---DMVNLSKLSKLDLEG-NKLKALPENHIA--MK---RL 185 (565)
T ss_pred eeecCchHHHH----------hhhhhhhccc-cccccCch---HHHHHHHHHHhhccc-cchhhCCHHHHH--HH---HH
Confidence 33333322211 1233333222 33444454 455566666666665 356666444443 33 66
Q ss_pred ceEEecccCcc-cceeccccccccCccccceeeecccceee-----------cccCCCcceecCCCcc---------ccC
Q 020456 196 QKLTLEENFLL-ADQVQPLFDEKVGEEVKGCIVFERMNYLT-----------LDCLPSLTSFCLGNYA---------LEF 254 (326)
Q Consensus 196 ~~L~i~~~c~~-l~~~~~~~~~~~~~~~~~~~~l~~L~~L~-----------l~~c~~l~~~~~~~~~---------~~~ 254 (326)
++|+. |.+ ++.+++. ++.+.+|..|+ +.+|..+.+++.+... .++
T Consensus 186 ~~ld~---~~N~L~tlP~~-----------lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L 251 (565)
T KOG0472|consen 186 KHLDC---NSNLLETLPPE-----------LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHL 251 (565)
T ss_pred Hhccc---chhhhhcCChh-----------hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhccc
Confidence 66553 333 3333222 33344444443 3344444444333211 256
Q ss_pred CcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 255 PSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 255 ~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
+++..|++++ .+++.+|.+++.+.+|++|++++.
T Consensus 252 ~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 252 NSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred ccceeeeccc-cccccCchHHHHhhhhhhhcccCC
Confidence 7888888865 578889998888889999999876
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.89 E-value=2.7e-05 Score=79.05 Aligned_cols=221 Identities=14% Similarity=0.104 Sum_probs=119.4
Q ss_pred CCCccEEEcccCCC-cccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 48 FCDIEYLQLSDFPC-LKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 48 ~~~L~~L~l~~~~~-l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
++.|++|-+.+... +..+.... ...++.|+.|++++|..+..+|.. ++.+-+||+|++++.. +..+|..-+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~f---f~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~L~~t~-I~~LP~~l~-- 615 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEF---FRSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLDLSDTG-ISHLPSGLG-- 615 (889)
T ss_pred CCccceEEEeecchhhhhcCHHH---HhhCcceEEEECCCCCccCcCChH--HhhhhhhhcccccCCC-ccccchHHH--
Confidence 66788888776542 23222221 146788999999998888777654 8889999999998743 444433211
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCC-CCCccCcchhhhccCCCCCCceEEecccCc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCP-NMETFVSNSVVHVTTDNKKPQKLTLEENFL 205 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~-~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~ 205 (326)
.+.+|.+|++.....+..++. ....+++|+.|.+.... ..+.. ...-...+. +|+.+.+ ..+.
T Consensus 616 --------~Lk~L~~Lnl~~~~~l~~~~~---i~~~L~~Lr~L~l~~s~~~~~~~-~l~el~~Le---~L~~ls~-~~~s 679 (889)
T KOG4658|consen 616 --------NLKKLIYLNLEVTGRLESIPG---ILLELQSLRVLRLPRSALSNDKL-LLKELENLE---HLENLSI-TISS 679 (889)
T ss_pred --------HHHhhheeccccccccccccc---hhhhcccccEEEeeccccccchh-hHHhhhccc---chhhhee-ecch
Confidence 233677778877777776643 34447888888876543 11111 111111222 3333333 2222
Q ss_pred c--cceeccc----------c-cccc-CccccceeeecccceeecccCCCcceecCC---Ccccc-CCcccEEEeccCCc
Q 020456 206 L--ADQVQPL----------F-DEKV-GEEVKGCIVFERMNYLTLDCLPSLTSFCLG---NYALE-FPSLEQVVVRQCPK 267 (326)
Q Consensus 206 ~--l~~~~~~----------~-~~~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~-~~~L~~L~i~~c~~ 267 (326)
. +..+... . .+.. -........+.+|+.|.+.+|...+..... ..... ++++.++.+..|..
T Consensus 680 ~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 680 VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc
Confidence 2 0000000 0 0000 001111345567888888888765432211 11112 56777777777777
Q ss_pred cccccCCCCCCCCccEEEeccccCCC
Q 020456 268 MKIFSQGVLDTPMLNKVNVTEEEKDD 293 (326)
Q Consensus 268 l~~l~~~~~~~~~L~~L~l~~c~~~~ 293 (326)
.+.... ....|+|+.+.+..|..+.
T Consensus 760 ~r~l~~-~~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 760 LRDLTW-LLFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred ccccch-hhccCcccEEEEecccccc
Confidence 764332 2246788888888875553
No 28
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.86 E-value=1.1e-06 Score=83.90 Aligned_cols=123 Identities=18% Similarity=0.128 Sum_probs=86.7
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC-cCcceeccccccccccCcCCCCCCCccEEecCCCcccccc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC-DSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRF 153 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c-~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 153 (326)
.+++|++|.+.+|..++..........+++|++|++.+| ...... +.. ........++|+.|++..|..+...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~--~~~~~~~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS----PLL--LLLLLSICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc----hhH--hhhhhhhcCCcCccchhhhhccCch
Confidence 479999999999998887543445788999999999985 222111 000 0002223468999999988865432
Q ss_pred ccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccc
Q 020456 154 CNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLAD 208 (326)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~ 208 (326)
-... -...+++|+.|.+.+|..+++.....++..++ +|++|++ ..|..+.
T Consensus 260 ~l~~-l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~---~L~~L~l-~~c~~~~ 309 (482)
T KOG1947|consen 260 GLSA-LASRCPNLETLSLSNCSNLTDEGLVSIAERCP---SLRELDL-SGCHGLT 309 (482)
T ss_pred hHHH-HHhhCCCcceEccCCCCccchhHHHHHHHhcC---cccEEee-ecCccch
Confidence 1100 11237899999999999888877777888887 9999999 9999874
No 29
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.81 E-value=7.7e-07 Score=71.12 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=17.2
Q ss_pred CccEEecCCCccccccccccccccccccccEEeEecCCCCCcc
Q 020456 138 KLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETF 180 (326)
Q Consensus 138 ~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~ 180 (326)
+|+.|.+.+- .+-++|. .++.+++|++|+|.+ .+++.+
T Consensus 151 ~lqil~lrdn-dll~lpk---eig~lt~lrelhiqg-nrl~vl 188 (264)
T KOG0617|consen 151 NLQILSLRDN-DLLSLPK---EIGDLTRLRELHIQG-NRLTVL 188 (264)
T ss_pred ceeEEeeccC-chhhCcH---HHHHHHHHHHHhccc-ceeeec
Confidence 4444444442 2333333 444555555555554 234443
No 30
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.76 E-value=2.7e-06 Score=83.63 Aligned_cols=176 Identities=15% Similarity=0.157 Sum_probs=88.8
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccc
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNF 156 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 156 (326)
.+|++++|+.. ++..++ .++..+++|+.+.+.... +..++...- ...+|+.|.+..+ .+++++.
T Consensus 241 ~nl~~~dis~n-~l~~lp--~wi~~~~nle~l~~n~N~-l~~lp~ri~----------~~~~L~~l~~~~n-el~yip~- 304 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNLP--EWIGACANLEALNANHNR-LVALPLRIS----------RITSLVSLSAAYN-ELEYIPP- 304 (1081)
T ss_pred ccceeeecchh-hhhcch--HHHHhcccceEecccchh-HHhhHHHHh----------hhhhHHHHHhhhh-hhhhCCC-
Confidence 46777777664 344443 457777777777766532 332211110 1136666666654 3666665
Q ss_pred cccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeec
Q 020456 157 TENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTL 236 (326)
Q Consensus 157 ~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 236 (326)
....++.|++|++.. .++..++......... +|+.|+. .|..+......+ ...++.|+.|.+
T Consensus 305 --~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~---~l~~ln~--s~n~l~~lp~~~----------e~~~~~Lq~Lyl 366 (1081)
T KOG0618|consen 305 --FLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNA---SLNTLNV--SSNKLSTLPSYE----------ENNHAALQELYL 366 (1081)
T ss_pred --cccccceeeeeeehh-ccccccchHHHhhhhH---HHHHHhh--hhcccccccccc----------chhhHHHHHHHH
Confidence 456678889998865 4666664422222111 3555554 444444433222 113344555555
Q ss_pred ccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEeccc
Q 020456 237 DCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEE 289 (326)
Q Consensus 237 ~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c 289 (326)
.+ ..|++-...... .++.|+.|++.+ ..+..||. ....++.|++|+++++
T Consensus 367 an-N~Ltd~c~p~l~-~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 367 AN-NHLTDSCFPVLV-NFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred hc-Ccccccchhhhc-cccceeeeeecc-cccccCCHHHHhchHHhHHHhcccc
Confidence 54 223322221111 445566665533 34444554 2334555666666554
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.56 E-value=0.00014 Score=59.61 Aligned_cols=38 Identities=18% Similarity=0.078 Sum_probs=13.7
Q ss_pred ccccccccEEeEecCCCCCcc-CcchhhhccCCCCCCceEEe
Q 020456 160 IIEMLMLWSLTIENCPNMETF-VSNSVVHVTTDNKKPQKLTL 200 (326)
Q Consensus 160 ~~~~~~L~~L~l~~C~~l~~~-~~~~~~~~~~~~~~L~~L~i 200 (326)
+..+++|+.|++.+.|--..- ....+...++ +|+.|+-
T Consensus 109 L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP---~Lk~LD~ 147 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP---SLKVLDG 147 (175)
T ss_dssp GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T---T-SEETT
T ss_pred HHcCCCcceeeccCCcccchhhHHHHHHHHcC---hhheeCC
Confidence 344666666666654321110 0122333444 7777664
No 32
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.54 E-value=1.1e-05 Score=64.72 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=40.2
Q ss_pred eecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCccccccCchHHH
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLNDT 306 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 306 (326)
.||.|+.|++.+ .++.+-..-+....+..|+-|++.+ ..++.+|..++.+++|+-|.+.+.+-+ .++...+.+..
T Consensus 100 s~p~levldlty-nnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll---~lpkeig~lt~ 174 (264)
T KOG0617|consen 100 SFPALEVLDLTY-NNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLL---SLPKEIGDLTR 174 (264)
T ss_pred CCchhhhhhccc-cccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCchh---hCcHHHHHHHH
Confidence 455666666655 3333222222222344555555532 345555655555566666655544222 23334444556
Q ss_pred HHHHHHhhh
Q 020456 307 IKQLFNEIV 315 (326)
Q Consensus 307 l~~l~i~~~ 315 (326)
|+.++|+|.
T Consensus 175 lrelhiqgn 183 (264)
T KOG0617|consen 175 LRELHIQGN 183 (264)
T ss_pred HHHHhcccc
Confidence 666666553
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.51 E-value=0.00012 Score=48.87 Aligned_cols=59 Identities=36% Similarity=0.432 Sum_probs=28.5
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
|+|++|++.++ .+..++... ...+++|++|+++++ +++.+.+. .+.++++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~---f~~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDS---FSNLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTT---TTTGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHH---HcCCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCC
Confidence 34555555554 344443322 134555666666544 24333322 2455555666655554
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.48 E-value=0.00033 Score=46.68 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=42.9
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEeccc
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEE 289 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c 289 (326)
|+|++|++.++ .++.++..... .+++|++|+++ ...++.++. .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~-~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFS-NLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTT-TGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHc-CCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCC
Confidence 46778888886 77778765543 68888888886 445666665 5567888999988877
No 35
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.34 E-value=2.1e-06 Score=77.20 Aligned_cols=82 Identities=11% Similarity=0.015 Sum_probs=60.5
Q ss_pred eeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCccccccCchH
Q 020456 225 CIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLN 304 (326)
Q Consensus 225 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 304 (326)
...++++..|++++ .+++++|.+.+ -+.+|.+|++++ ..+..+|..++++ .|+.|.+.+.+-.+..+.-...+..
T Consensus 248 ~~~L~~l~vLDLRd-Nklke~Pde~c--lLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~ 322 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRD-NKLKEVPDEIC--LLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQ 322 (565)
T ss_pred hcccccceeeeccc-cccccCchHHH--HhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHH
Confidence 45678899999998 78999998776 677899999955 5788899888888 9999999998766654332233334
Q ss_pred HHHHHHH
Q 020456 305 DTIKQLF 311 (326)
Q Consensus 305 ~~l~~l~ 311 (326)
.-||.+.
T Consensus 323 ~vLKyLr 329 (565)
T KOG0472|consen 323 EVLKYLR 329 (565)
T ss_pred HHHHHHH
Confidence 4455543
No 36
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.00027 Score=61.59 Aligned_cols=64 Identities=20% Similarity=0.177 Sum_probs=38.4
Q ss_pred cccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
+..+|.|++|+++..+--..|- . +| .-..||+.|.+++. .+.-....++...+|.+++|++++.
T Consensus 93 le~lP~l~~LNls~N~L~s~I~--~-lp-~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIK--S-LP-LPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HhcCccceEeeccCCcCCCccc--c-Cc-ccccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccc
Confidence 4458888888887433222211 1 22 23468888888774 4544434445667777888877764
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.46 E-value=0.0013 Score=59.54 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=40.2
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceec
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVL 120 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 120 (326)
+.-.++.+. -.+++.|+++. .+.+.+||+|+++.. +++.+.|.. ++.+++|-.|.+.+...+.+++
T Consensus 67 ~~tveirLd-qN~I~~iP~~a---F~~l~~LRrLdLS~N-~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 67 PETVEIRLD-QNQISSIPPGA---FKTLHRLRRLDLSKN-NISFIAPDA-FKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CcceEEEec-cCCcccCChhh---ccchhhhceeccccc-chhhcChHh-hhhhHhhhHHHhhcCCchhhhh
Confidence 445556665 34456666554 256777788888775 455555543 6667777777666655565553
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.42 E-value=0.0048 Score=50.53 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=9.4
Q ss_pred cccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEe
Q 020456 161 IEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTL 200 (326)
Q Consensus 161 ~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i 200 (326)
..+++|+.|++++ ..++++. ..+...++ +|++|++
T Consensus 61 ~~L~~L~~L~L~~-N~I~~i~-~~l~~~lp---~L~~L~L 95 (175)
T PF14580_consen 61 PGLPRLKTLDLSN-NRISSIS-EGLDKNLP---NLQELYL 95 (175)
T ss_dssp ---TT--EEE--S-S---S-C-HHHHHH-T---T--EEE-
T ss_pred cChhhhhhcccCC-CCCCccc-cchHHhCC---cCCEEEC
Confidence 3456666666654 3455542 12222344 6666666
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.35 E-value=0.0013 Score=65.41 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=60.9
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
-.+|+.|+|+|...+..-|... .. .-||+|++|.+.+-.-..+. ......++|+|..|+|+++. +..+ .|..
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~k-ig-~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS- 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKK-IG-TMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTN-ISNL---SGIS- 192 (699)
T ss_pred HHhhhhcCccccchhhccHHHH-Hh-hhCcccceEEecCceecchh-HHHHhhccCccceeecCCCC-ccCc---HHHh-
Confidence 4567778887766665556443 21 45788888887774322222 22346677888888887753 3332 1211
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCC
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNME 178 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~ 178 (326)
.+.+|+.|.+.++.--.... . ..+-.+++|+.|+|++-....
T Consensus 193 -------~LknLq~L~mrnLe~e~~~~-l-~~LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 193 -------RLKNLQVLSMRNLEFESYQD-L-IDLFNLKKLRVLDISRDKNND 234 (699)
T ss_pred -------ccccHHHHhccCCCCCchhh-H-HHHhcccCCCeeecccccccc
Confidence 23456666555543211000 0 033456777777777644433
No 40
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.00089 Score=55.18 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=51.3
Q ss_pred hhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcc
Q 020456 41 CYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIE 117 (326)
Q Consensus 41 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 117 (326)
-++.+..++.++.|.+.+|..+.+...+. +. +-+++|+.|+|++|+++++..... +.++++|+.|.|.+.+.+.
T Consensus 117 Gle~L~~l~~i~~l~l~~ck~~dD~~L~~-l~-~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 117 GLEHLRDLRSIKSLSLANCKYFDDWCLER-LG-GLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHHHHhccchhhhheeccccchhhHHHHH-hc-ccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCchhhh
Confidence 34556667888888888888877622222 22 356888888888888887765543 6778888888887766543
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.93 E-value=0.0099 Score=36.66 Aligned_cols=39 Identities=33% Similarity=0.555 Sum_probs=26.2
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCccee
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEV 119 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 119 (326)
++|++|+++++ +++++++. +++|++|+.|+++++. ++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~--l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE--LSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH--GTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCC-CCcccCch--HhCCCCCCEEEecCCC-CCCC
Confidence 47888888887 46666553 6788888888888864 4433
No 42
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.67 E-value=0.0046 Score=61.53 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=17.4
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEcc
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRN 112 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 112 (326)
.+|++|+|++-..+..-.+...-..||+|+.|.+.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~ 157 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG 157 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC
Confidence 355566655544333333333333455566655554
No 43
>PLN03150 hypothetical protein; Provisional
Probab=95.32 E-value=0.053 Score=53.76 Aligned_cols=107 Identities=10% Similarity=0.077 Sum_probs=64.5
Q ss_pred ccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccc
Q 020456 79 LEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTE 158 (326)
Q Consensus 79 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 158 (326)
++.|++.++. +....+.. +.++++|+.|+++++.....++... ..+++|+.|+++++.--..+|.
T Consensus 420 v~~L~L~~n~-L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~----------~~l~~L~~LdLs~N~lsg~iP~--- 484 (623)
T PLN03150 420 IDGLGLDNQG-LRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSL----------GSITSLEVLDLSYNSFNGSIPE--- 484 (623)
T ss_pred EEEEECCCCC-ccccCCHH-HhCCCCCCEEECCCCcccCcCChHH----------hCCCCCCEEECCCCCCCCCCch---
Confidence 6777887764 55444443 7788889999888865332332211 1345888888887654445554
Q ss_pred cccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCc
Q 020456 159 NIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFL 205 (326)
Q Consensus 159 ~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~ 205 (326)
.+..+++|+.|+++++.--..+ |..+..... ++..+.+ .+..
T Consensus 485 ~l~~L~~L~~L~Ls~N~l~g~i-P~~l~~~~~---~~~~l~~-~~N~ 526 (623)
T PLN03150 485 SLGQLTSLRILNLNGNSLSGRV-PAALGGRLL---HRASFNF-TDNA 526 (623)
T ss_pred HHhcCCCCCEEECcCCcccccC-ChHHhhccc---cCceEEe-cCCc
Confidence 5677888888888876432233 444433223 5556666 5444
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.13 E-value=0.00054 Score=60.85 Aligned_cols=232 Identities=16% Similarity=0.105 Sum_probs=119.0
Q ss_pred cccCCCccEEEcccCCCcc---cccccCC-C--CCCCCCCccEEEEecCCCCCcCCc--hhHHhhCCCCCEEEEccCcCc
Q 020456 45 MIGFCDIEYLQLSDFPCLK---EIWHGQA-L--PVSFFNNLEELEVDDCTNMSSAIP--ANLLRCLNNLRCLEVRNCDSI 116 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~---~~~~~~~-l--~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~~c~~l 116 (326)
+...++|+..+++++.--+ +++.... + .-..+|+|++|++++...-....+ ..++.++..|++|.+.+|..-
T Consensus 54 L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 54 LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 4446688888887653211 2221110 0 002357899999988643222211 134667889999999888532
Q ss_pred ceecccccccc-----ccCcCCCCCCCccEEecCCCcccccccccc--ccccccccccEEeEecCCCCCccCcchh---h
Q 020456 117 EEVLHLEELNA-----DKEHISPLFPKLSELRLIDLPKLKRFCNFT--ENIIEMLMLWSLTIENCPNMETFVSNSV---V 186 (326)
Q Consensus 117 ~~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~--~~~~~~~~L~~L~l~~C~~l~~~~~~~~---~ 186 (326)
..- ...+.. ....-....|.|+.+..+. .+++...... ..+...+.|+.+.++.- .+..-....+ +
T Consensus 134 ~~a--g~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal 209 (382)
T KOG1909|consen 134 PEA--GGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEAL 209 (382)
T ss_pred hhH--HHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHH
Confidence 110 000000 0011112346888887765 3343322100 03455678888888652 2222211111 2
Q ss_pred hccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceec--C-CCccccCCcccEEEec
Q 020456 187 HVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFC--L-GNYALEFPSLEQVVVR 263 (326)
Q Consensus 187 ~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~-~~~~~~~~~L~~L~i~ 263 (326)
.+++ +|+.|++ .+-..-..... ........++.|+.+++.+|--=+.=. . .......|+|+.+.+.
T Consensus 210 ~~~~---~LevLdl-~DNtft~egs~-------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~ 278 (382)
T KOG1909|consen 210 EHCP---HLEVLDL-RDNTFTLEGSV-------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELA 278 (382)
T ss_pred HhCC---cceeeec-ccchhhhHHHH-------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccC
Confidence 2455 8998888 65432221100 011124556789999999984311000 0 0011247899999887
Q ss_pred cCCcccc----ccCCCCCCCCccEEEeccccC
Q 020456 264 QCPKMKI----FSQGVLDTPMLNKVNVTEEEK 291 (326)
Q Consensus 264 ~c~~l~~----l~~~~~~~~~L~~L~l~~c~~ 291 (326)
++.--.. +.......|.|++|.+++|+.
T Consensus 279 gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 279 GNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7653221 222333578999999999854
No 45
>PLN03150 hypothetical protein; Provisional
Probab=95.06 E-value=0.061 Score=53.37 Aligned_cols=109 Identities=16% Similarity=0.111 Sum_probs=67.5
Q ss_pred CccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccccc
Q 020456 50 DIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADK 129 (326)
Q Consensus 50 ~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 129 (326)
.++.|++.++.--..++... ..+++|+.|+++++. +....|.. ++.+++|+.|+++++..-..++..-
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i----~~L~~L~~L~Ls~N~-l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l------ 486 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI----SKLRHLQSINLSGNS-IRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESL------ 486 (623)
T ss_pred EEEEEECCCCCccccCCHHH----hCCCCCCEEECCCCc-ccCcCChH-HhCCCCCCEEECCCCCCCCCCchHH------
Confidence 36777777654433333322 567899999999984 55444443 7889999999999875433332211
Q ss_pred CcCCCCCCCccEEecCCCccccccccccccccc-cccccEEeEecCCCC
Q 020456 130 EHISPLFPKLSELRLIDLPKLKRFCNFTENIIE-MLMLWSLTIENCPNM 177 (326)
Q Consensus 130 ~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~-~~~L~~L~l~~C~~l 177 (326)
..+++|+.|+++++.--..+|. .+.. +.++..+.+.+.+.+
T Consensus 487 ----~~L~~L~~L~Ls~N~l~g~iP~---~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 487 ----GQLTSLRILNLNGNSLSGRVPA---ALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred ----hcCCCCCEEECcCCcccccCCh---HHhhccccCceEEecCCccc
Confidence 1346899999988764445554 2222 245566777665443
No 46
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.82 E-value=0.0023 Score=57.96 Aligned_cols=87 Identities=14% Similarity=0.242 Sum_probs=48.2
Q ss_pred CcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecC
Q 020456 8 IVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDC 87 (326)
Q Consensus 8 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c 87 (326)
.+++++|++|+++. ..++.+..+. .+.+++|.+|.+.+...++.++.+. + +.+..|+.|.+.-+
T Consensus 87 F~~l~~LRrLdLS~---N~Is~I~p~A----------F~GL~~l~~Lvlyg~NkI~~l~k~~-F--~gL~slqrLllNan 150 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSK---NNISFIAPDA----------FKGLASLLSLVLYGNNKITDLPKGA-F--GGLSSLQRLLLNAN 150 (498)
T ss_pred ccchhhhceecccc---cchhhcChHh----------hhhhHhhhHHHhhcCCchhhhhhhH-h--hhHHHHHHHhcChh
Confidence 55777888888772 2233333221 2346677777777766666655433 1 34455555655544
Q ss_pred CCCCcCCchhHHhhCCCCCEEEEcc
Q 020456 88 TNMSSAIPANLLRCLNNLRCLEVRN 112 (326)
Q Consensus 88 ~~l~~~~~~~~~~~l~~L~~L~l~~ 112 (326)
++..+. ...++.+++|..|.+.+
T Consensus 151 -~i~Cir-~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 151 -HINCIR-QDALRDLPSLSLLSLYD 173 (498)
T ss_pred -hhcchh-HHHHHHhhhcchhcccc
Confidence 233333 33466777777776665
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.73 E-value=0.036 Score=34.13 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=21.8
Q ss_pred CcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 255 PSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 255 ~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
++|++|+++++ .++.+|..+..+++|+.|+++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 46777777554 55566665667777777777777
No 48
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.0021 Score=53.10 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=21.2
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCcc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKM 268 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l 268 (326)
.++|+.|+|++|+.+++....... .+++|+.|.+++-+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLL-KLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchheeeccCCCeechhHHHHHH-HhhhhHHHHhcCchhh
Confidence 356666666666665554332221 4556666655555443
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.33 E-value=0.019 Score=50.51 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=25.9
Q ss_pred CccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEe
Q 020456 138 KLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTL 200 (326)
Q Consensus 138 ~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i 200 (326)
.|.++++++ ..+..|.. +..-.|.++.|+++. +++... .+++ .+. +|.+|++
T Consensus 285 ~LtelDLS~-N~I~~iDE---SvKL~Pkir~L~lS~-N~i~~v--~nLa-~L~---~L~~LDL 336 (490)
T KOG1259|consen 285 ELTELDLSG-NLITQIDE---SVKLAPKLRRLILSQ-NRIRTV--QNLA-ELP---QLQLLDL 336 (490)
T ss_pred hhhhccccc-cchhhhhh---hhhhccceeEEeccc-cceeee--hhhh-hcc---cceEeec
Confidence 566666654 22333332 444556777777765 233332 1222 333 6666666
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.96 E-value=0.13 Score=47.83 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=7.1
Q ss_pred HhhCCCCCEEEEccC
Q 020456 99 LRCLNNLRCLEVRNC 113 (326)
Q Consensus 99 ~~~l~~L~~L~l~~c 113 (326)
++.+++|+.|.+.++
T Consensus 159 ~~~l~~L~~L~l~~N 173 (394)
T COG4886 159 LRNLPNLKNLDLSFN 173 (394)
T ss_pred hhccccccccccCCc
Confidence 334455555555443
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.87 E-value=0.25 Score=45.96 Aligned_cols=62 Identities=24% Similarity=0.334 Sum_probs=38.0
Q ss_pred CccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceec
Q 020456 50 DIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVL 120 (326)
Q Consensus 50 ~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 120 (326)
+|+.|++.+- .+..++. +...+++|+.|.+..++ +.++++. ....++|+.|++++.. +..++
T Consensus 141 nL~~L~l~~N-~i~~l~~----~~~~l~~L~~L~l~~N~-l~~l~~~--~~~~~~L~~L~ls~N~-i~~l~ 202 (394)
T COG4886 141 NLKELDLSDN-KIESLPS----PLRNLPNLKNLDLSFND-LSDLPKL--LSNLSNLNNLDLSGNK-ISDLP 202 (394)
T ss_pred hccccccccc-chhhhhh----hhhccccccccccCCch-hhhhhhh--hhhhhhhhheeccCCc-cccCc
Confidence 7888888743 3343321 12567888888888874 5555543 3367788888887743 44443
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.50 E-value=0.15 Score=43.86 Aligned_cols=112 Identities=20% Similarity=0.152 Sum_probs=68.6
Q ss_pred CCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCc--CcceeccccccccccCcCCCCCCCccEEecCCCc--c
Q 020456 74 SFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCD--SIEEVLHLEELNADKEHISPLFPKLSELRLIDLP--K 149 (326)
Q Consensus 74 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~--~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~--~ 149 (326)
..|.+|+.|++.++. ++.+.. +..+++|++|.+++.. ....+.. .....|+|+.|.+++-. -
T Consensus 40 d~~~~le~ls~~n~g-ltt~~~---~P~Lp~LkkL~lsdn~~~~~~~l~v----------l~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 40 DEFVELELLSVINVG-LTTLTN---FPKLPKLKKLELSDNYRRVSGGLEV----------LAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred ccccchhhhhhhccc-eeeccc---CCCcchhhhhcccCCccccccccee----------hhhhCCceeEEeecCCcccc
Confidence 567888888888885 333221 4568899999998752 1111100 11233799999887521 1
Q ss_pred ccccccccccccccccccEEeEecCCCCCccC--cchhhhccCCCCCCceEEecccCcccc
Q 020456 150 LKRFCNFTENIIEMLMLWSLTIENCPNMETFV--SNSVVHVTTDNKKPQKLTLEENFLLAD 208 (326)
Q Consensus 150 L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~--~~~~~~~~~~~~~L~~L~i~~~c~~l~ 208 (326)
+.++. .+..+++|..|.+.+|+-.. +. ...++..++ +|++|+- .++..-.
T Consensus 106 lstl~----pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~---~L~~LD~-~dv~~~E 157 (260)
T KOG2739|consen 106 LSTLR----PLKELENLKSLDLFNCSVTN-LDDYREKVFLLLP---SLKYLDG-CDVDGEE 157 (260)
T ss_pred ccccc----hhhhhcchhhhhcccCCccc-cccHHHHHHHHhh---hhccccc-cccCCcc
Confidence 22332 34567888899999986443 21 235566666 8888887 6666543
No 53
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.30 E-value=0.22 Score=23.77 Aligned_cols=11 Identities=9% Similarity=0.117 Sum_probs=4.6
Q ss_pred cccEEEeccCC
Q 020456 256 SLEQVVVRQCP 266 (326)
Q Consensus 256 ~L~~L~i~~c~ 266 (326)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45555555544
No 54
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=90.04 E-value=0.086 Score=46.47 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=32.7
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
-..|++|++++. .+..+-... .-.|.++.|.++... +..+- + ++++++|+.|++++.
T Consensus 283 Wq~LtelDLS~N-~I~~iDESv----KL~Pkir~L~lS~N~-i~~v~--n-La~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESV----KLAPKLRRLILSQNR-IRTVQ--N-LAELPQLQLLDLSGN 339 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhh----hhccceeEEeccccc-eeeeh--h-hhhcccceEeecccc
Confidence 345777777742 233322222 335778888877753 22221 1 567788888888764
No 55
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.78 E-value=0.17 Score=27.05 Aligned_cols=18 Identities=39% Similarity=0.768 Sum_probs=12.4
Q ss_pred CCCccEEEEecCCCCCcC
Q 020456 76 FNNLEELEVDDCTNMSSA 93 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~ 93 (326)
+++|++|+|++|+++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467777777777776654
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.48 E-value=0.27 Score=42.39 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=59.7
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
+..|+.|++.++....- .. + -.+|+|++|.+++...-...-....+..+++|++|.+++.. +..+-....+.
T Consensus 42 ~~~le~ls~~n~gltt~---~~-~--P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~- 113 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL---TN-F--PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLK- 113 (260)
T ss_pred ccchhhhhhhccceeec---cc-C--CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhh-
Confidence 44555555554433221 11 2 25678899988876211111111236677999999988754 22111111111
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCC
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNM 177 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l 177 (326)
.+++|..|++.+|+...---.....+.-+++|+.|+-.++..-
T Consensus 114 -------~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 114 -------ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred -------hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 2457888888888654411000003344677777777665443
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=88.08 E-value=0.026 Score=55.33 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=53.4
Q ss_pred eeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCcc--ccccCc
Q 020456 225 CIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDE--GCWEGN 302 (326)
Q Consensus 225 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~~ 302 (326)
+..+++|++|+|.+ ..|..+|..... .|. |+.|.+++ ..++.+. |+.++.+|+.|+++++--..-+. ..|
T Consensus 205 Lr~l~~LkhLDlsy-N~L~~vp~l~~~-gc~-L~~L~lrn-N~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLw--- 276 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSY-NCLRHVPQLSMV-GCK-LQLLNLRN-NALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLW--- 276 (1096)
T ss_pred HHhccccccccccc-chhccccccchh-hhh-heeeeecc-cHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHH---
Confidence 34568899999887 557777665543 444 88888865 3444443 56678899999998852111111 233
Q ss_pred hHHHHHHHHHhhh
Q 020456 303 LNDTIKQLFNEIV 315 (326)
Q Consensus 303 ~~~~l~~l~i~~~ 315 (326)
.+.+|+.|++.|.
T Consensus 277 sLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 277 SLSSLIVLWLEGN 289 (1096)
T ss_pred HHHHHHHHhhcCC
Confidence 3468888888775
No 58
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=87.37 E-value=0.13 Score=49.21 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=17.1
Q ss_pred cccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 256 SLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 256 ~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
.|.+|++ .|.++.++|..+..+..|++|.++++
T Consensus 212 pLi~lDf-ScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 212 PLIRLDF-SCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred ceeeeec-ccCceeecchhhhhhhhheeeeeccC
Confidence 3444444 45555555555555555555555544
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=86.88 E-value=0.56 Score=23.91 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=7.8
Q ss_pred ccEEEeccCCccccccCC
Q 020456 257 LEQVVVRQCPKMKIFSQG 274 (326)
Q Consensus 257 L~~L~i~~c~~l~~l~~~ 274 (326)
|++|++++| .++.+|..
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 444555444 44444443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=86.64 E-value=2.6 Score=35.29 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=30.2
Q ss_pred HhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEec
Q 020456 99 LRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIEN 173 (326)
Q Consensus 99 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~ 173 (326)
+.+++.|..|.+.+.. +.++-+ .....+|+|+.|.+.+ .+++++-... .+..+|+|++|.+-+
T Consensus 60 lp~l~rL~tLll~nNr-It~I~p---------~L~~~~p~l~~L~Ltn-Nsi~~l~dl~-pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNR-ITRIDP---------DLDTFLPNLKTLILTN-NSIQELGDLD-PLASCPKLEYLTLLG 122 (233)
T ss_pred CCCccccceEEecCCc-ceeecc---------chhhhccccceEEecC-cchhhhhhcc-hhccCCccceeeecC
Confidence 3356666666665532 333311 1112455666666655 2233222111 345567777776654
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.93 E-value=3.9 Score=30.92 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=2.6
Q ss_pred CCCCCEEEE
Q 020456 102 LNNLRCLEV 110 (326)
Q Consensus 102 l~~L~~L~l 110 (326)
+.+|+.+.+
T Consensus 11 ~~~l~~i~~ 19 (129)
T PF13306_consen 11 CSNLESITF 19 (129)
T ss_dssp -TT--EEEE
T ss_pred CCCCCEEEE
Confidence 344444444
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.60 E-value=0.057 Score=47.08 Aligned_cols=9 Identities=33% Similarity=0.438 Sum_probs=4.0
Q ss_pred cccccEEeE
Q 020456 163 MLMLWSLTI 171 (326)
Q Consensus 163 ~~~L~~L~l 171 (326)
++.|+.|.+
T Consensus 40 Mp~lEVLsL 48 (388)
T KOG2123|consen 40 MPLLEVLSL 48 (388)
T ss_pred cccceeEEe
Confidence 344444444
No 63
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=79.44 E-value=0.45 Score=45.69 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=27.3
Q ss_pred CccEEecCCCccccccccccccccccccccEEeEecCCCCCcc
Q 020456 138 KLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETF 180 (326)
Q Consensus 138 ~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~ 180 (326)
.|..|++ .|.++.++|. .+..+..|+.|.+.+ +=+++-
T Consensus 212 pLi~lDf-ScNkis~iPv---~fr~m~~Lq~l~Len-NPLqSP 249 (722)
T KOG0532|consen 212 PLIRLDF-SCNKISYLPV---DFRKMRHLQVLQLEN-NPLQSP 249 (722)
T ss_pred ceeeeec-ccCceeecch---hhhhhhhheeeeecc-CCCCCC
Confidence 5666666 4688888887 778889999998865 335443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.85 E-value=13 Score=27.91 Aligned_cols=32 Identities=9% Similarity=0.303 Sum_probs=11.4
Q ss_pred cCCcccEEEeccCCccccccCCCC-CCCCccEEEec
Q 020456 253 EFPSLEQVVVRQCPKMKIFSQGVL-DTPMLNKVNVT 287 (326)
Q Consensus 253 ~~~~L~~L~i~~c~~l~~l~~~~~-~~~~L~~L~l~ 287 (326)
.+++|+.+.+.. .++.++.... .+ .|+++.+.
T Consensus 79 ~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 79 NCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-TTECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 355555555522 2333433222 23 55555554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.47 E-value=0.17 Score=44.23 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=8.8
Q ss_pred cccccccEEeEecCCCC
Q 020456 161 IEMLMLWSLTIENCPNM 177 (326)
Q Consensus 161 ~~~~~L~~L~l~~C~~l 177 (326)
.++|+|+.|+|..-|..
T Consensus 85 knlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCC 101 (388)
T ss_pred hcCchhhhHhhccCCcc
Confidence 44555666665544433
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=76.17 E-value=4.4 Score=33.98 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=58.2
Q ss_pred ccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccc
Q 020456 44 EMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLE 123 (326)
Q Consensus 44 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 123 (326)
.+..+++|++|.+.+.. +..|-+.. ...+|+|+.|.+.+. ++..+..-.-+..||.|++|.+-+.+.-..
T Consensus 59 ~lp~l~rL~tLll~nNr-It~I~p~L---~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Npv~~k----- 128 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNR-ITRIDPDL---DTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNPVEHK----- 128 (233)
T ss_pred cCCCccccceEEecCCc-ceeeccch---hhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCchhcc-----
Confidence 34457888888887544 44444333 256899999999885 233322222255688999998887653211
Q ss_pred ccccccCcCCCCCCCccEEecCCCcccc
Q 020456 124 ELNADKEHISPLFPKLSELRLIDLPKLK 151 (326)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 151 (326)
...-..+.-.+|+|+.|++.+...-+
T Consensus 129 --~~YR~yvl~klp~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 129 --KNYRLYVLYKLPSLRTLDFQKVTRKE 154 (233)
T ss_pred --cCceeEEEEecCcceEeehhhhhHHH
Confidence 00011123357899999998766444
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=75.03 E-value=1.3 Score=40.05 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=85.2
Q ss_pred cCCcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccC---CCCCCCCCCccEE
Q 020456 6 QGIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQ---ALPVSFFNNLEEL 82 (326)
Q Consensus 6 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~---~l~~~~~~~L~~L 82 (326)
..+.+-+.|+++.+... . +.. .....+... .+..+.|+++.+.......+ +. ......+++|+.|
T Consensus 151 kk~~~~~~Lrv~i~~rN--r-len---~ga~~~A~~---~~~~~~leevr~~qN~I~~e---G~~al~eal~~~~~LevL 218 (382)
T KOG1909|consen 151 KKAASKPKLRVFICGRN--R-LEN---GGATALAEA---FQSHPTLEEVRLSQNGIRPE---GVTALAEALEHCPHLEVL 218 (382)
T ss_pred hccCCCcceEEEEeecc--c-ccc---ccHHHHHHH---HHhccccceEEEecccccCc---hhHHHHHHHHhCCcceee
Confidence 45667888999988721 1 111 111222222 33368999999875333221 11 0112568999999
Q ss_pred EEecCCCCCcCCch---hHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccc-cccccc
Q 020456 83 EVDDCTNMSSAIPA---NLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKR-FCNFTE 158 (326)
Q Consensus 83 ~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~-~~~~~~ 158 (326)
++.+.. ++..... ..+..+++|++|.+.+|.. ...|-.+....+...+|+|+.|.+.++.--.. .-....
T Consensus 219 dl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll-----~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 219 DLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLL-----ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred ecccch-hhhHHHHHHHHHhcccchheeeccccccc-----ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence 999864 3322111 1245678999999999852 22222222222334578999999987642210 000000
Q ss_pred cccccccccEEeEecCCC
Q 020456 159 NIIEMLMLWSLTIENCPN 176 (326)
Q Consensus 159 ~~~~~~~L~~L~l~~C~~ 176 (326)
.+...|.|..|.+++|..
T Consensus 293 ~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 293 CMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcchhhHHhcCCcccc
Confidence 223468899999998753
No 68
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=74.52 E-value=0.31 Score=48.19 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=14.8
Q ss_pred ccCCcCCCCeeEEEecccCCc
Q 020456 5 SQGIVSTPKLHEVQVTEKNED 25 (326)
Q Consensus 5 ~~~~~~~~~L~~L~~~~~~~~ 25 (326)
+..|..|++|+.|.+++++..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred CceeccccceeeEEecCcchh
Confidence 345678888999988855443
No 69
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.64 E-value=1.1 Score=39.80 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=23.1
Q ss_pred CCCCCccEEEEecCCCCCcCC-chhHHhhCCCCCEEEEcc
Q 020456 74 SFFNNLEELEVDDCTNMSSAI-PANLLRCLNNLRCLEVRN 112 (326)
Q Consensus 74 ~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~l~~ 112 (326)
..+..++++++.+.. ++++. ...++.+||.|+.|.++.
T Consensus 68 ~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~ 106 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSC 106 (418)
T ss_pred HHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccC
Confidence 345677777777653 33321 123466788888888764
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=50.48 E-value=10 Score=35.68 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=17.3
Q ss_pred CCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 74 SFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 74 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
..+++|++|++++. +++++.. +..++.|+.|.+.++
T Consensus 115 ~~~~~L~~L~ls~N-~I~~i~~---l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFN-KITKLEG---LSTLTLLKELNLSGN 150 (414)
T ss_pred hhhhcchheecccc-ccccccc---hhhccchhhheeccC
Confidence 34555555555554 3434332 234445555555543
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=49.93 E-value=12 Score=19.05 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=5.5
Q ss_pred CCCCEEEEccCc
Q 020456 103 NNLRCLEVRNCD 114 (326)
Q Consensus 103 ~~L~~L~l~~c~ 114 (326)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 455666665554
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=44.56 E-value=14 Score=34.79 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=37.6
Q ss_pred cccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCc
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCD 114 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 114 (326)
+..+++|++|++++ ..+..++.. ..++.|+.|++.+++ +.++.- +..+++|+.+++.++.
T Consensus 114 l~~~~~L~~L~ls~-N~I~~i~~l-----~~l~~L~~L~l~~N~-i~~~~~---~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSF-NKITKLEGL-----STLTLLKELNLSGNL-ISDISG---LESLKSLKLLDLSYNR 173 (414)
T ss_pred hhhhhcchheeccc-cccccccch-----hhccchhhheeccCc-chhccC---CccchhhhcccCCcch
Confidence 44588888888875 334443321 455678888888874 444332 3347777777777654
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=31.50 E-value=30 Score=17.90 Aligned_cols=18 Identities=11% Similarity=0.349 Sum_probs=8.4
Q ss_pred CcccEEEeccCCccccccC
Q 020456 255 PSLEQVVVRQCPKMKIFSQ 273 (326)
Q Consensus 255 ~~L~~L~i~~c~~l~~l~~ 273 (326)
++|++|++.++ .++.+|.
T Consensus 2 ~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCEEECCCC-cCCcCCH
Confidence 34555555332 4444444
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=31.50 E-value=30 Score=17.90 Aligned_cols=18 Identities=11% Similarity=0.349 Sum_probs=8.4
Q ss_pred CcccEEEeccCCccccccC
Q 020456 255 PSLEQVVVRQCPKMKIFSQ 273 (326)
Q Consensus 255 ~~L~~L~i~~c~~l~~l~~ 273 (326)
++|++|++.++ .++.+|.
T Consensus 2 ~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCEEECCCC-cCCcCCH
Confidence 34555555332 4444444
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=26.27 E-value=8 Score=30.50 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=38.7
Q ss_pred eeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 225 CIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 225 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
..-|+..+.|++.+ .++.++|.... .+|.|+.|.++.-+-.. +|+.+..+.++..|+..+.
T Consensus 73 t~kf~t~t~lNl~~-neisdvPeE~A--am~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 73 TIKFPTATTLNLAN-NEISDVPEELA--AMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hhccchhhhhhcch-hhhhhchHHHh--hhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCC
Confidence 33456778888877 67788887744 78889998886655433 6665433445555544433
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=21.29 E-value=22 Score=31.42 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=23.7
Q ss_pred CCCCccEEEEecCCCCCcCCch--hHHhhCCCCCEEEEccCc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPA--NLLRCLNNLRCLEVRNCD 114 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~l~~c~ 114 (326)
.||.|+..++++...-...++. .++.+-..|++|.+.+|.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 4677777777775433222221 235566777777777764
Done!