Query 020456
Match_columns 326
No_of_seqs 141 out of 1504
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 03:14:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.7 2.3E-16 8E-21 142.0 18.9 232 11-289 80-311 (328)
2 4fcg_A Uncharacterized protein 99.6 2E-15 6.7E-20 136.0 13.0 221 48-310 80-306 (328)
3 3t6q_A CD180 antigen; protein- 99.5 6.8E-13 2.3E-17 128.8 20.5 61 226-289 473-533 (606)
4 3zyj_A Leucine-rich repeat-con 99.5 1E-12 3.4E-17 122.9 20.8 208 45-292 84-292 (440)
5 3zyi_A Leucine-rich repeat-con 99.5 1.5E-12 5.2E-17 122.1 20.9 215 45-299 95-310 (452)
6 3rgz_A Protein brassinosteroid 99.5 5.2E-13 1.8E-17 133.4 16.8 62 47-114 416-477 (768)
7 4fmz_A Internalin; leucine ric 99.5 9.4E-13 3.2E-17 118.9 17.0 228 8-290 84-322 (347)
8 2id5_A Lingo-1, leucine rich r 99.5 3.4E-12 1.2E-16 120.4 21.6 181 75-290 150-331 (477)
9 2id5_A Lingo-1, leucine rich r 99.5 1.5E-12 5E-17 122.9 19.0 236 6-290 50-307 (477)
10 3vq2_A TLR4, TOLL-like recepto 99.5 8.1E-13 2.8E-17 128.3 17.5 61 227-290 495-556 (606)
11 3v47_A TOLL-like receptor 5B a 99.5 1.1E-13 3.7E-18 129.7 9.9 85 227-315 321-405 (455)
12 2z63_A TOLL-like receptor 4, v 99.5 2.2E-13 7.5E-18 131.1 11.9 133 136-290 395-529 (570)
13 3vq2_A TLR4, TOLL-like recepto 99.5 1.6E-13 5.6E-18 133.2 11.1 156 136-314 398-554 (606)
14 3rgz_A Protein brassinosteroid 99.5 2E-13 6.8E-18 136.5 11.7 37 253-289 678-714 (768)
15 3t6q_A CD180 antigen; protein- 99.5 1E-12 3.4E-17 127.6 15.8 88 8-114 274-361 (606)
16 1ogq_A PGIP-2, polygalacturona 99.5 9.6E-13 3.3E-17 117.5 14.3 228 45-315 72-301 (313)
17 4fmz_A Internalin; leucine ric 99.4 4.2E-12 1.4E-16 114.7 18.3 56 228-289 242-297 (347)
18 3v47_A TOLL-like receptor 5B a 99.4 6.2E-12 2.1E-16 117.7 20.0 111 160-290 295-406 (455)
19 3o53_A Protein LRIM1, AGAP0063 99.4 1.2E-12 4.2E-17 117.0 14.4 154 135-314 118-271 (317)
20 1xku_A Decorin; proteoglycan, 99.4 9.5E-12 3.2E-16 111.7 20.2 212 48-290 51-274 (330)
21 1ogq_A PGIP-2, polygalacturona 99.4 5.8E-13 2E-17 119.0 11.1 238 4-293 68-305 (313)
22 3o6n_A APL1; leucine-rich repe 99.4 4E-12 1.4E-16 116.8 16.1 60 48-113 68-127 (390)
23 1ozn_A Reticulon 4 receptor; N 99.4 4.7E-12 1.6E-16 111.3 15.9 207 48-292 31-238 (285)
24 1xku_A Decorin; proteoglycan, 99.4 8.3E-12 2.8E-16 112.1 17.7 203 47-293 98-307 (330)
25 2xwt_C Thyrotropin receptor; s 99.4 5E-12 1.7E-16 108.2 15.4 203 48-290 30-237 (239)
26 3o6n_A APL1; leucine-rich repe 99.4 1.4E-11 4.8E-16 113.1 18.8 61 47-113 91-151 (390)
27 2z80_A TOLL-like receptor 2, v 99.4 3.6E-12 1.2E-16 115.5 14.2 229 12-290 52-312 (353)
28 2ast_B S-phase kinase-associat 99.4 1.5E-13 5E-18 123.6 4.8 208 49-289 70-282 (336)
29 2ast_B S-phase kinase-associat 99.4 1.9E-13 6.4E-18 122.9 5.2 185 47-265 91-282 (336)
30 2z66_A Variable lymphocyte rec 99.4 4.1E-12 1.4E-16 112.8 13.6 206 47-291 50-260 (306)
31 3zyi_A Leucine-rich repeat-con 99.4 1.8E-11 6.3E-16 114.7 18.6 208 7-266 94-301 (452)
32 3zyj_A Leucine-rich repeat-con 99.4 1.6E-11 5.6E-16 114.6 18.1 203 48-290 63-266 (440)
33 3oja_A Leucine-rich immune mol 99.4 7.4E-12 2.5E-16 118.6 15.7 153 135-313 118-270 (487)
34 4ecn_A Leucine-rich repeat pro 99.4 1.8E-12 6.3E-17 130.2 11.8 81 227-315 751-837 (876)
35 2z63_A TOLL-like receptor 4, v 99.4 1.7E-11 5.9E-16 117.9 17.5 251 6-314 276-527 (570)
36 1o6v_A Internalin A; bacterial 99.4 2.8E-11 9.7E-16 113.8 18.4 123 136-290 264-386 (466)
37 2xwt_C Thyrotropin receptor; s 99.4 1.4E-11 4.7E-16 105.5 14.7 203 12-267 31-238 (239)
38 4eco_A Uncharacterized protein 99.3 1E-12 3.6E-17 128.5 7.9 61 227-290 511-577 (636)
39 4eco_A Uncharacterized protein 99.3 8.2E-12 2.8E-16 122.2 13.8 118 44-174 201-340 (636)
40 3oja_B Anopheles plasmodium-re 99.3 1.9E-11 6.4E-16 118.7 16.2 12 136-147 170-181 (597)
41 2ft3_A Biglycan; proteoglycan, 99.3 7.2E-11 2.5E-15 106.0 18.8 200 47-291 100-306 (332)
42 3ogk_B Coronatine-insensitive 99.3 1.7E-14 5.9E-19 139.6 -6.0 65 228-295 462-528 (592)
43 4ay9_X Follicle-stimulating ho 99.3 6.4E-11 2.2E-15 107.3 17.8 203 47-288 52-255 (350)
44 3oja_B Anopheles plasmodium-re 99.3 6.3E-11 2.1E-15 115.0 18.7 107 160-290 250-356 (597)
45 2ft3_A Biglycan; proteoglycan, 99.3 8.1E-11 2.8E-15 105.7 17.9 204 48-290 53-275 (332)
46 4ecn_A Leucine-rich repeat pro 99.3 2.5E-11 8.4E-16 122.1 15.0 97 4-114 481-584 (876)
47 3j0a_A TOLL-like receptor 5; m 99.3 9.3E-11 3.2E-15 118.3 19.2 37 253-290 336-373 (844)
48 1p9a_G Platelet glycoprotein I 99.3 1E-10 3.5E-15 103.2 17.1 202 45-291 6-207 (290)
49 3g06_A SSPH2 (leucine-rich rep 99.3 2.2E-10 7.5E-15 111.3 20.9 56 228-290 240-295 (622)
50 1ozn_A Reticulon 4 receptor; N 99.3 8E-11 2.7E-15 103.3 15.9 184 74-290 29-212 (285)
51 2z66_A Variable lymphocyte rec 99.3 3.1E-11 1.1E-15 107.1 12.7 182 47-266 76-259 (306)
52 2p1m_B Transport inhibitor res 99.3 1.1E-12 3.6E-17 127.0 3.4 255 9-287 63-346 (594)
53 3o53_A Protein LRIM1, AGAP0063 99.3 5.8E-12 2E-16 112.6 7.9 216 47-315 32-247 (317)
54 2z81_A CD282 antigen, TOLL-lik 99.3 5.5E-11 1.9E-15 113.9 15.1 37 253-290 385-421 (549)
55 1h6u_A Internalin H; cell adhe 99.3 7.2E-11 2.5E-15 105.1 14.6 35 75-113 61-95 (308)
56 2z62_A TOLL-like receptor 4, v 99.3 2.1E-10 7.2E-15 100.1 17.0 203 48-290 27-235 (276)
57 2z81_A CD282 antigen, TOLL-lik 99.3 3.4E-11 1.2E-15 115.4 12.8 249 7-290 246-508 (549)
58 3j0a_A TOLL-like receptor 5; m 99.2 7.5E-10 2.6E-14 111.7 22.7 67 45-114 93-159 (844)
59 1o6v_A Internalin A; bacterial 99.2 2.3E-10 7.9E-15 107.6 17.8 201 47-290 88-298 (466)
60 3oja_A Leucine-rich immune mol 99.2 2.4E-11 8.1E-16 115.1 10.2 215 47-314 32-246 (487)
61 1jl5_A Outer protein YOPM; leu 99.2 9.4E-10 3.2E-14 103.2 20.4 80 230-319 318-410 (454)
62 1ziw_A TOLL-like receptor 3; i 99.2 9.1E-11 3.1E-15 115.4 13.7 89 227-319 428-518 (680)
63 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 1.5E-09 5E-14 104.5 21.8 58 48-113 99-156 (562)
64 2o6q_A Variable lymphocyte rec 99.2 6.9E-10 2.3E-14 96.7 17.5 199 50-290 17-216 (270)
65 1wwl_A Monocyte differentiatio 99.2 3.5E-10 1.2E-14 100.7 15.2 205 47-289 93-306 (312)
66 1ziw_A TOLL-like receptor 3; i 99.2 1.3E-09 4.3E-14 107.3 20.1 62 226-290 477-547 (680)
67 3rfs_A Internalin B, repeat mo 99.2 1.9E-10 6.6E-15 100.3 12.2 35 75-113 61-95 (272)
68 3rfs_A Internalin B, repeat mo 99.2 4.5E-10 1.5E-14 98.0 14.5 178 74-290 38-216 (272)
69 2z7x_B TOLL-like receptor 1, v 99.2 3.5E-10 1.2E-14 107.7 14.9 133 135-291 346-480 (520)
70 2p1m_B Transport inhibitor res 99.2 1.2E-11 4.2E-16 119.5 4.9 217 47-289 64-324 (594)
71 3ogk_B Coronatine-insensitive 99.2 1.1E-11 3.9E-16 119.7 4.5 138 136-289 402-548 (592)
72 1h6u_A Internalin H; cell adhe 99.2 4.2E-10 1.4E-14 100.1 14.3 191 9-266 38-228 (308)
73 2z80_A TOLL-like receptor 2, v 99.2 5E-11 1.7E-15 108.0 8.4 207 48-290 51-288 (353)
74 2z62_A TOLL-like receptor 4, v 99.2 1.1E-09 3.9E-14 95.4 16.8 202 12-266 28-235 (276)
75 4ay9_X Follicle-stimulating ho 99.2 6.9E-10 2.4E-14 100.4 15.9 208 48-292 29-236 (350)
76 3bz5_A Internalin-J, INLJ; leu 99.1 1.5E-09 5.3E-14 101.8 17.4 54 232-289 267-328 (457)
77 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 8.5E-10 2.9E-14 106.2 15.3 58 229-290 450-508 (562)
78 2o6q_A Variable lymphocyte rec 99.1 2.8E-09 9.6E-14 92.7 17.0 181 48-266 36-216 (270)
79 2z7x_B TOLL-like receptor 1, v 99.1 1.7E-09 5.7E-14 102.9 16.2 132 135-290 322-455 (520)
80 2ca6_A RAN GTPase-activating p 99.1 4.8E-12 1.7E-16 116.1 -1.9 260 4-290 24-314 (386)
81 3bz5_A Internalin-J, INLJ; leu 99.1 2.1E-09 7.3E-14 100.8 16.0 61 227-290 284-350 (457)
82 1jl5_A Outer protein YOPM; leu 99.1 1.3E-08 4.6E-13 95.3 19.9 75 228-314 336-425 (454)
83 3g06_A SSPH2 (leucine-rich rep 99.1 4.2E-09 1.5E-13 102.3 16.9 73 229-314 221-293 (622)
84 1p9a_G Platelet glycoprotein I 99.1 3.5E-09 1.2E-13 93.3 14.9 201 8-266 6-206 (290)
85 4glp_A Monocyte differentiatio 99.0 6.1E-09 2.1E-13 92.5 14.2 208 48-289 90-304 (310)
86 4ezg_A Putative uncharacterize 99.0 1.9E-09 6.4E-14 89.4 9.9 151 74-289 41-191 (197)
87 4ezg_A Putative uncharacterize 99.0 8.1E-09 2.8E-13 85.5 12.7 129 47-205 42-170 (197)
88 4glp_A Monocyte differentiatio 98.9 1.7E-09 6E-14 96.0 8.5 189 46-266 114-305 (310)
89 1wwl_A Monocyte differentiatio 98.9 3.9E-09 1.3E-13 93.9 10.5 213 10-266 93-307 (312)
90 1h6t_A Internalin B; cell adhe 98.9 7.9E-09 2.7E-13 91.0 12.3 167 48-266 45-211 (291)
91 2ca6_A RAN GTPase-activating p 98.9 4.3E-10 1.5E-14 103.1 3.9 226 41-290 24-285 (386)
92 3m19_A Variable lymphocyte rec 98.9 2.4E-08 8.4E-13 85.8 14.8 128 49-204 14-141 (251)
93 1h6t_A Internalin B; cell adhe 98.9 1.5E-08 5.1E-13 89.3 12.9 145 47-239 66-210 (291)
94 1z7x_W Ribonuclease inhibitor; 98.9 1.7E-10 5.8E-15 108.0 0.1 192 77-289 199-408 (461)
95 1m9s_A Internalin B; cell inva 98.9 1.3E-08 4.5E-13 98.7 11.7 169 47-267 41-209 (605)
96 1z7x_W Ribonuclease inhibitor; 98.9 2.4E-10 8.3E-15 106.9 -0.4 59 228-290 255-324 (461)
97 3m19_A Variable lymphocyte rec 98.8 6.2E-08 2.1E-12 83.2 14.0 157 48-240 34-190 (251)
98 3goz_A Leucine-rich repeat-con 98.8 1.8E-09 6.1E-14 98.2 3.6 252 10-290 20-295 (362)
99 1m9s_A Internalin B; cell inva 98.8 2.9E-08 9.9E-13 96.2 11.9 168 10-240 41-208 (605)
100 4g8a_A TOLL-like receptor 4; l 98.7 2.6E-07 9E-12 89.4 16.8 114 160-291 465-579 (635)
101 3cvr_A Invasion plasmid antige 98.7 2E-07 6.9E-12 89.5 15.6 175 49-289 59-240 (571)
102 4g8a_A TOLL-like receptor 4; l 98.7 1.1E-07 3.7E-12 92.1 13.8 59 228-289 493-552 (635)
103 2ell_A Acidic leucine-rich nuc 98.7 5.3E-08 1.8E-12 78.2 7.9 61 228-290 94-158 (168)
104 2o6s_A Variable lymphocyte rec 98.6 1.8E-07 6.1E-12 77.8 10.1 14 161-174 97-110 (208)
105 2ell_A Acidic leucine-rich nuc 98.6 4.2E-07 1.4E-11 72.8 11.4 133 48-205 23-158 (168)
106 1xeu_A Internalin C; cellular 98.6 2.4E-07 8.2E-12 80.2 10.4 145 47-240 39-183 (263)
107 1xeu_A Internalin C; cellular 98.5 1.1E-06 3.9E-11 76.0 12.2 166 48-266 18-183 (263)
108 3goz_A Leucine-rich repeat-con 98.5 5.8E-08 2E-12 88.1 3.6 222 48-290 21-264 (362)
109 2je0_A Acidic leucine-rich nuc 98.5 2.5E-07 8.4E-12 72.7 6.7 112 48-180 16-128 (149)
110 3cvr_A Invasion plasmid antige 98.5 2.1E-06 7.3E-11 82.4 14.3 189 12-272 59-247 (571)
111 3e6j_A Variable lymphocyte rec 98.5 1.8E-06 6.3E-11 72.9 12.3 36 76-113 63-98 (229)
112 1a9n_A U2A', U2A'; complex (nu 98.4 9.3E-07 3.2E-11 71.5 9.6 57 49-113 42-98 (176)
113 3e6j_A Variable lymphocyte rec 98.4 1.8E-06 6.2E-11 73.0 11.3 65 102-180 39-103 (229)
114 2je0_A Acidic leucine-rich nuc 98.4 1.7E-07 5.7E-12 73.7 4.5 34 136-174 41-74 (149)
115 2o6s_A Variable lymphocyte rec 98.4 2.6E-06 9E-11 70.7 12.0 36 136-174 51-86 (208)
116 3e4g_A ATP synthase subunit S, 98.4 2.7E-07 9.2E-12 74.5 4.7 41 138-180 115-155 (176)
117 2v70_A SLIT-2, SLIT homolog 2 98.3 5.3E-06 1.8E-10 69.6 12.3 36 77-113 32-67 (220)
118 3e4g_A ATP synthase subunit S, 98.3 1.8E-07 6.2E-12 75.5 2.7 19 162-180 83-101 (176)
119 3sb4_A Hypothetical leucine ri 98.3 3.8E-06 1.3E-10 74.9 11.7 35 76-113 100-134 (329)
120 2v9t_B SLIT homolog 2 protein 98.3 8.3E-06 2.8E-10 68.4 11.7 128 49-200 32-159 (220)
121 2v9t_B SLIT homolog 2 protein 98.2 8.2E-06 2.8E-10 68.5 10.8 83 103-204 32-114 (220)
122 2v70_A SLIT-2, SLIT homolog 2 98.2 1.2E-05 4E-10 67.5 11.7 36 253-289 127-163 (220)
123 2xot_A Amphoterin-induced prot 98.2 9E-06 3.1E-10 73.5 11.1 138 48-210 38-178 (361)
124 2xot_A Amphoterin-induced prot 98.2 6.3E-06 2.2E-10 74.6 9.4 159 75-264 37-198 (361)
125 1w8a_A SLIT protein; signaling 98.0 4.7E-05 1.6E-09 62.3 11.7 59 229-289 78-136 (192)
126 2ra8_A Uncharacterized protein 98.0 2.5E-06 8.6E-11 77.3 3.9 57 47-111 170-227 (362)
127 1a9n_A U2A', U2A'; complex (nu 98.0 9.5E-06 3.2E-10 65.4 6.7 82 101-204 17-98 (176)
128 3sb4_A Hypothetical leucine ri 98.0 2.1E-05 7.3E-10 70.1 9.4 102 163-286 225-328 (329)
129 2o6r_A Variable lymphocyte rec 98.0 5.8E-05 2E-09 60.7 10.7 59 228-289 75-134 (177)
130 2o6r_A Variable lymphocyte rec 97.9 0.00015 5.3E-09 58.1 12.1 108 76-204 27-134 (177)
131 1w8a_A SLIT protein; signaling 97.9 0.00013 4.6E-09 59.5 11.2 105 77-200 29-133 (192)
132 2wfh_A SLIT homolog 2 protein 97.8 0.0003 1E-08 57.5 12.7 107 75-203 29-135 (193)
133 4fdw_A Leucine rich hypothetic 97.8 0.0015 5.1E-08 59.8 18.5 194 49-289 157-355 (401)
134 2ra8_A Uncharacterized protein 97.8 3.6E-05 1.2E-09 69.6 7.3 15 99-113 168-182 (362)
135 4fdw_A Leucine rich hypothetic 97.8 0.0017 5.9E-08 59.4 18.4 192 50-288 136-332 (401)
136 1dce_A Protein (RAB geranylger 97.8 9.9E-05 3.4E-09 70.9 10.4 126 77-236 441-567 (567)
137 2wfh_A SLIT homolog 2 protein 97.7 0.00041 1.4E-08 56.7 11.0 58 137-204 31-88 (193)
138 1ds9_A Outer arm dynein; leuci 97.7 1.8E-06 6.1E-11 71.2 -3.5 107 74-205 45-151 (198)
139 4b8c_D Glucose-repressible alc 97.7 8.3E-05 2.8E-09 73.6 7.8 58 228-289 269-326 (727)
140 4b8c_D Glucose-repressible alc 97.6 7.9E-05 2.7E-09 73.8 7.4 111 45-179 220-330 (727)
141 3un9_A NLR family member X1; l 97.5 3.1E-06 1.1E-10 77.0 -4.5 13 254-266 238-250 (372)
142 1dce_A Protein (RAB geranylger 97.5 0.0004 1.4E-08 66.7 9.4 122 49-199 441-566 (567)
143 2r9u_A Variable lymphocyte rec 97.4 0.00093 3.2E-08 53.6 9.7 84 76-174 32-115 (174)
144 1ds9_A Outer arm dynein; leuci 97.3 1.2E-05 4.2E-10 66.1 -2.6 124 136-285 47-180 (198)
145 3g39_A Variable lymphocyte rec 97.3 0.0015 5.1E-08 52.1 9.7 83 76-173 29-111 (170)
146 2r9u_A Variable lymphocyte rec 97.1 0.0019 6.4E-08 51.8 8.3 60 227-289 55-115 (174)
147 3g39_A Variable lymphocyte rec 97.1 0.0018 6.2E-08 51.6 8.0 59 228-289 53-112 (170)
148 3un9_A NLR family member X1; l 97.0 0.00018 6.2E-09 65.3 1.6 174 48-240 71-250 (372)
149 2ifg_A High affinity nerve gro 96.9 0.0039 1.3E-07 55.5 9.8 83 194-290 32-114 (347)
150 4fs7_A Uncharacterized protein 96.9 0.065 2.2E-06 48.5 18.2 56 229-289 320-376 (394)
151 2ifg_A High affinity nerve gro 96.7 0.0057 2E-07 54.4 8.6 85 136-240 30-114 (347)
152 4gt6_A Cell surface protein; l 96.6 0.2 6.9E-06 45.2 19.0 56 229-289 311-367 (394)
153 4fs7_A Uncharacterized protein 96.5 0.036 1.2E-06 50.2 12.9 52 228-284 342-393 (394)
154 1io0_A Tropomodulin; LRR prote 95.2 0.0021 7.3E-08 52.0 -1.1 36 253-289 119-161 (185)
155 1io0_A Tropomodulin; LRR prote 94.6 0.017 5.8E-07 46.6 2.7 65 45-114 32-104 (185)
156 4gt6_A Cell surface protein; l 94.5 2.5 8.6E-05 37.8 17.3 103 161-288 285-387 (394)
157 4h09_A Hypothetical leucine ri 94.1 3 0.0001 37.0 18.4 54 229-286 286-340 (379)
158 3rw6_A Nuclear RNA export fact 91.6 0.26 8.7E-06 42.2 5.6 36 76-112 169-205 (267)
159 3rw6_A Nuclear RNA export fact 91.1 0.24 8.2E-06 42.4 4.9 91 47-146 168-260 (267)
160 4h09_A Hypothetical leucine ri 82.9 24 0.00081 31.0 19.1 56 229-288 263-319 (379)
161 3rfe_A Platelet glycoprotein I 67.9 5.7 0.0002 29.5 4.1 36 77-114 31-66 (130)
162 3rfe_A Platelet glycoprotein I 43.0 22 0.00074 26.2 3.6 31 231-263 33-63 (130)
163 1pgv_A TMD-1, tropomodulin TMD 38.9 7.2 0.00024 31.4 0.3 36 164-200 70-105 (197)
164 1pgv_A TMD-1, tropomodulin TMD 25.5 24 0.00081 28.3 1.2 118 163-289 40-167 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=2.3e-16 Score=142.05 Aligned_cols=232 Identities=17% Similarity=0.201 Sum_probs=163.8
Q ss_pred CCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCC
Q 020456 11 TPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNM 90 (326)
Q Consensus 11 ~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l 90 (326)
.++++.|++.+.+.. .+.. .+..+++|++|++.++.- ..++... ..+++|++|++++|. +
T Consensus 80 ~~~l~~L~L~~n~l~---~lp~-----------~l~~l~~L~~L~L~~n~l-~~lp~~~----~~l~~L~~L~Ls~n~-l 139 (328)
T 4fcg_A 80 QPGRVALELRSVPLP---QFPD-----------QAFRLSHLQHMTIDAAGL-MELPDTM----QQFAGLETLTLARNP-L 139 (328)
T ss_dssp STTCCEEEEESSCCS---SCCS-----------CGGGGTTCSEEEEESSCC-CCCCSCG----GGGTTCSEEEEESCC-C
T ss_pred ccceeEEEccCCCch---hcCh-----------hhhhCCCCCEEECCCCCc-cchhHHH----hccCCCCEEECCCCc-c
Confidence 477888888833322 1111 133488999999987654 3555433 568999999999984 5
Q ss_pred CcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEe
Q 020456 91 SSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLT 170 (326)
Q Consensus 91 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~ 170 (326)
+.++.. +..+++|++|++++|.....++...+... .......+++|+.|+++++ +++.++. .+..+++|++|+
T Consensus 140 ~~lp~~--l~~l~~L~~L~L~~n~~~~~~p~~~~~~~-~~~~~~~l~~L~~L~L~~n-~l~~lp~---~l~~l~~L~~L~ 212 (328)
T 4fcg_A 140 RALPAS--IASLNRLRELSIRACPELTELPEPLASTD-ASGEHQGLVNLQSLRLEWT-GIRSLPA---SIANLQNLKSLK 212 (328)
T ss_dssp CCCCGG--GGGCTTCCEEEEEEETTCCCCCSCSEEEC--CCCEEESTTCCEEEEEEE-CCCCCCG---GGGGCTTCCEEE
T ss_pred ccCcHH--HhcCcCCCEEECCCCCCccccChhHhhcc-chhhhccCCCCCEEECcCC-CcCcchH---hhcCCCCCCEEE
Confidence 555433 78899999999999877765543221100 0000112578999999886 4666665 677889999999
Q ss_pred EecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCc
Q 020456 171 IENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNY 250 (326)
Q Consensus 171 l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 250 (326)
+++| .+..++ .. ...++ +|++|++ .+|.....+... ...+++|++|++.+|..+..++....
T Consensus 213 L~~N-~l~~l~-~~-l~~l~---~L~~L~L-s~n~~~~~~p~~-----------~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 213 IRNS-PLSALG-PA-IHHLP---KLEELDL-RGCTALRNYPPI-----------FGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp EESS-CCCCCC-GG-GGGCT---TCCEEEC-TTCTTCCBCCCC-----------TTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred ccCC-CCCcCc-hh-hccCC---CCCEEEC-cCCcchhhhHHH-----------hcCCCCCCEEECCCCCchhhcchhhh
Confidence 9987 455553 33 33455 8999999 888876654332 34568899999999998888886544
Q ss_pred cccCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 251 ALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 251 ~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
.+++|++|++++|+.++.+|..+..+++|+.+.+...
T Consensus 275 --~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 275 --RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp --GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred --cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 7899999999999999999998888999999988754
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.63 E-value=2e-15 Score=136.00 Aligned_cols=221 Identities=13% Similarity=0.116 Sum_probs=162.2
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.+++++|++.++. +..++... ..+++|++|+++++. ++.++.. ++.+++|++|+++++. +..++..-
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l----~~l~~L~~L~L~~n~-l~~lp~~--~~~l~~L~~L~Ls~n~-l~~lp~~l---- 146 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQA----FRLSHLQHMTIDAAG-LMELPDT--MQQFAGLETLTLARNP-LRALPASI---- 146 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCG----GGGTTCSEEEEESSC-CCCCCSC--GGGGTTCSEEEEESCC-CCCCCGGG----
T ss_pred ccceeEEEccCCC-chhcChhh----hhCCCCCEEECCCCC-ccchhHH--HhccCCCCEEECCCCc-cccCcHHH----
Confidence 6899999999755 45555443 568999999999985 5555433 6889999999999975 44443211
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccc------cccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEec
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTE------NIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLE 201 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~------~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~ 201 (326)
..+++|+.|++++|..++.++..-. .+..+++|+.|++++| .++.+ +..+ ..++ +|++|++
T Consensus 147 ------~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~l-p~~l-~~l~---~L~~L~L- 213 (328)
T 4fcg_A 147 ------ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSL-PASI-ANLQ---NLKSLKI- 213 (328)
T ss_dssp ------GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCC-CGGG-GGCT---TCCEEEE-
T ss_pred ------hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcc-hHhh-cCCC---CCCEEEc-
Confidence 1357999999999998888876211 1345899999999997 56655 3333 3455 9999999
Q ss_pred ccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCc
Q 020456 202 ENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPML 281 (326)
Q Consensus 202 ~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L 281 (326)
.+|. ++.+... ...+++|++|++.+|.....++.... .+++|++|++++|..++.+|..+..+++|
T Consensus 214 ~~N~-l~~l~~~-----------l~~l~~L~~L~Ls~n~~~~~~p~~~~--~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 214 RNSP-LSALGPA-----------IHHLPKLEELDLRGCTALRNYPPIFG--GRAPLKRLILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp ESSC-CCCCCGG-----------GGGCTTCCEEECTTCTTCCBCCCCTT--CCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred cCCC-CCcCchh-----------hccCCCCCEEECcCCcchhhhHHHhc--CCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence 8876 3333221 44678999999999998888876554 78999999999999999999888889999
Q ss_pred cEEEeccccCCCCccccccCchHHHHHHH
Q 020456 282 NKVNVTEEEKDDDDEGCWEGNLNDTIKQL 310 (326)
Q Consensus 282 ~~L~l~~c~~~~~~~~~~~~~~~~~l~~l 310 (326)
++|++++|.... .++..+..+++++.+
T Consensus 280 ~~L~L~~n~~~~--~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 280 EKLDLRGCVNLS--RLPSLIAQLPANCII 306 (328)
T ss_dssp CEEECTTCTTCC--CCCGGGGGSCTTCEE
T ss_pred CEEeCCCCCchh--hccHHHhhccCceEE
Confidence 999999996543 333333333344333
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.52 E-value=6.8e-13 Score=128.83 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=37.7
Q ss_pred eeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 226 IVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 226 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
..+++|++|++.+|. ++.++..... .+++|++|+++++.-....|..+..++.| +|++++|
T Consensus 473 ~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 473 QTLGRLEILVLSFCD-LSSIDQHAFT-SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp GGCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred ccCCCccEEECCCCc-cCccChhhhc-cccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 345677777777763 4444332222 56778888777765444445566667777 7777776
No 4
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.52 E-value=1e-12 Score=122.89 Aligned_cols=208 Identities=18% Similarity=0.197 Sum_probs=137.3
Q ss_pred cccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 124 (326)
+..+++|++|+++++. +..+.... ...+++|++|+++++ +++.+++. .+..+++|++|+++++. ++.++.
T Consensus 84 ~~~l~~L~~L~Ls~n~-i~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-i~~~~~--- 153 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNH-IRTIEIGA---FNGLANLNTLELFDN-RLTTIPNG-AFVYLSKLKELWLRNNP-IESIPS--- 153 (440)
T ss_dssp TSSCSSCCEEECCSSC-CCEECGGG---GTTCSSCCEEECCSS-CCSSCCTT-TSCSCSSCCEEECCSCC-CCEECT---
T ss_pred hhCCCCCCEEECCCCc-CCccChhh---ccCCccCCEEECCCC-cCCeeCHh-HhhccccCceeeCCCCc-ccccCH---
Confidence 3447788888887654 34333222 145678888888887 46555443 25677888888888754 433321
Q ss_pred cccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC
Q 020456 125 LNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
.....+++|+.|++.++..+..++.. .+..+++|++|++++| +++.++. ...+. +|++|++ .++
T Consensus 154 ------~~~~~l~~L~~L~l~~~~~l~~i~~~--~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~---~L~~L~L-s~N 217 (440)
T 3zyj_A 154 ------YAFNRIPSLRRLDLGELKRLSYISEG--AFEGLSNLRYLNLAMC-NLREIPN---LTPLI---KLDELDL-SGN 217 (440)
T ss_dssp ------TTTTTCTTCCEEECCCCTTCCEECTT--TTTTCSSCCEEECTTS-CCSSCCC---CTTCS---SCCEEEC-TTS
T ss_pred ------HHhhhCcccCEeCCCCCCCcceeCcc--hhhcccccCeecCCCC-cCccccc---cCCCc---ccCEEEC-CCC
Confidence 11123578899999888888777652 3567888999999887 5665532 22344 8999998 776
Q ss_pred cccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccE
Q 020456 205 LLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNK 283 (326)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~ 283 (326)
. ++.+.+.. ...+++|++|++.++ .++.+...... .+++|++|+++++ .++.++. .+..+++|++
T Consensus 218 ~-l~~~~~~~----------~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 218 H-LSAIRPGS----------FQGLMHLQKLWMIQS-QIQVIERNAFD-NLQSLVEINLAHN-NLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp C-CCEECTTT----------TTTCTTCCEEECTTC-CCCEECTTSST-TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCE
T ss_pred c-cCccChhh----------hccCccCCEEECCCC-ceeEEChhhhc-CCCCCCEEECCCC-CCCccChhHhccccCCCE
Confidence 4 54443321 335688999999985 46666554333 7889999999876 5666665 3456899999
Q ss_pred EEeccccCC
Q 020456 284 VNVTEEEKD 292 (326)
Q Consensus 284 L~l~~c~~~ 292 (326)
|++++++-.
T Consensus 284 L~L~~Np~~ 292 (440)
T 3zyj_A 284 IHLHHNPWN 292 (440)
T ss_dssp EECCSSCEE
T ss_pred EEcCCCCcc
Confidence 999887533
No 5
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.51 E-value=1.5e-12 Score=122.10 Aligned_cols=215 Identities=17% Similarity=0.181 Sum_probs=142.1
Q ss_pred cccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 124 (326)
+..+++|++|+++++. +..+.... ...+++|++|+++++. ++.+++. .++.+++|++|+++++. ++.++.
T Consensus 95 ~~~l~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~--- 164 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNS-IRQIEVGA---FNGLASLNTLELFDNW-LTVIPSG-AFEYLSKLRELWLRNNP-IESIPS--- 164 (452)
T ss_dssp TTTCTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSSC-CSBCCTT-TSSSCTTCCEEECCSCC-CCEECT---
T ss_pred cCCCCCCCEEECCCCc-cCCcChhh---ccCcccCCEEECCCCc-CCccChh-hhcccCCCCEEECCCCC-cceeCH---
Confidence 3347888888888653 34333222 2457888888888874 5555443 35678888888888764 443321
Q ss_pred cccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC
Q 020456 125 LNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
.....+++|+.|+++++..++.++.. .+..+++|+.|++++| ++..++. ...+. +|++|++ .++
T Consensus 165 ------~~~~~l~~L~~L~l~~~~~l~~i~~~--~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~---~L~~L~L-s~N 228 (452)
T 3zyi_A 165 ------YAFNRVPSLMRLDLGELKKLEYISEG--AFEGLFNLKYLNLGMC-NIKDMPN---LTPLV---GLEELEM-SGN 228 (452)
T ss_dssp ------TTTTTCTTCCEEECCCCTTCCEECTT--TTTTCTTCCEEECTTS-CCSSCCC---CTTCT---TCCEEEC-TTS
T ss_pred ------hHHhcCCcccEEeCCCCCCccccChh--hccCCCCCCEEECCCC-ccccccc---ccccc---cccEEEC-cCC
Confidence 11124578999999988888887653 3567888999999886 4555532 22344 8999998 776
Q ss_pred cccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccE
Q 020456 205 LLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNK 283 (326)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~ 283 (326)
. ++.+.+.. ...+++|++|++.++. ++.+...... .+++|++|+++++ .++.+|. .+..+++|++
T Consensus 229 ~-l~~~~~~~----------~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 229 H-FPEIRPGS----------FHGLSSLKKLWVMNSQ-VSLIERNAFD-GLASLVELNLAHN-NLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp C-CSEECGGG----------GTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSS-CCSCCCTTSSTTCTTCCE
T ss_pred c-CcccCccc----------ccCccCCCEEEeCCCc-CceECHHHhc-CCCCCCEEECCCC-cCCccChHHhccccCCCE
Confidence 5 44432221 3456899999999864 5555443332 7899999999877 5666775 4457899999
Q ss_pred EEeccccCCCCccccc
Q 020456 284 VNVTEEEKDDDDEGCW 299 (326)
Q Consensus 284 L~l~~c~~~~~~~~~~ 299 (326)
|++++++-.-+....|
T Consensus 295 L~L~~Np~~CdC~~~~ 310 (452)
T 3zyi_A 295 LHLHHNPWNCDCDILW 310 (452)
T ss_dssp EECCSSCEECSTTTHH
T ss_pred EEccCCCcCCCCCchH
Confidence 9999875443334443
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.49 E-value=5.2e-13 Score=133.44 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=30.0
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCD 114 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 114 (326)
.+++|++|++.++.....++... ..+++|++|++.+|. +....+.. +..+++|++|++++|.
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~L~~n~-l~~~~p~~-~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSL----GSLSKLRDLKLWLNM-LEGEIPQE-LMYVKTLETLILDFND 477 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGG----GGCTTCCEEECCSSC-CCSCCCGG-GGGCTTCCEEECCSSC
T ss_pred cCCCCCEEECcCCcccCcccHHH----hcCCCCCEEECCCCc-ccCcCCHH-HcCCCCceEEEecCCc
Confidence 35666666666543322222221 345566666666653 33332322 4455666666665553
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.48 E-value=9.4e-13 Score=118.94 Aligned_cols=228 Identities=11% Similarity=0.152 Sum_probs=117.2
Q ss_pred CcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecC
Q 020456 8 IVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDC 87 (326)
Q Consensus 8 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c 87 (326)
+..+++|++|++.+....... .+..+++|++|++.++.- ..+.. ...+++|++|++++|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~---------------~~~~l~~L~~L~l~~n~i-~~~~~-----~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS---------------ALQNLTNLRELYLNEDNI-SDISP-----LANLTKMYSLNLGAN 142 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG---------------GGTTCTTCSEEECTTSCC-CCCGG-----GTTCTTCCEEECTTC
T ss_pred hhcCCcCCEEEccCCcccCch---------------HHcCCCcCCEEECcCCcc-cCchh-----hccCCceeEEECCCC
Confidence 668889999998843322211 133467777777765542 22221 145566777777766
Q ss_pred CCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc------c-----cCcCCCCCCCccEEecCCCccccccccc
Q 020456 88 TNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA------D-----KEHISPLFPKLSELRLIDLPKLKRFCNF 156 (326)
Q Consensus 88 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~------~-----~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 156 (326)
........ +..+++|++|++++|.. ..+........ . .......+++|+.|.+.++. +..+.
T Consensus 143 ~~~~~~~~---~~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-- 215 (347)
T 4fmz_A 143 HNLSDLSP---LSNMTGLNYLTVTESKV-KDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQ-ITDIT-- 215 (347)
T ss_dssp TTCCCCGG---GTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCCG--
T ss_pred CCcccccc---hhhCCCCcEEEecCCCc-CCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCC-CCCCc--
Confidence 55443322 45666666666666532 21211000000 0 00000122344444444432 22211
Q ss_pred cccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeec
Q 020456 157 TENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTL 236 (326)
Q Consensus 157 ~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 236 (326)
.+..+++|++|++++| .++...+ ...++ +|++|++ .+|. ++.+.. ...+++|++|++
T Consensus 216 --~~~~~~~L~~L~l~~n-~l~~~~~---~~~l~---~L~~L~l-~~n~-l~~~~~------------~~~l~~L~~L~l 272 (347)
T 4fmz_A 216 --PVANMTRLNSLKIGNN-KITDLSP---LANLS---QLTWLEI-GTNQ-ISDINA------------VKDLTKLKMLNV 272 (347)
T ss_dssp --GGGGCTTCCEEECCSS-CCCCCGG---GTTCT---TCCEEEC-CSSC-CCCCGG------------GTTCTTCCEEEC
T ss_pred --hhhcCCcCCEEEccCC-ccCCCcc---hhcCC---CCCEEEC-CCCc-cCCChh------------HhcCCCcCEEEc
Confidence 1345566666666665 3444322 22333 6777776 6553 222210 234577888888
Q ss_pred ccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 237 DCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 237 ~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
.++ .++.++. ...+++|++|++++|.--...+..+..+++|++|++++|.
T Consensus 273 ~~n-~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 273 GSN-QISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CSS-CCCCCGG---GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred cCC-ccCCChh---hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 776 4444432 1267788888887775443344445567888888888874
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.48 E-value=3.4e-12 Score=120.35 Aligned_cols=181 Identities=19% Similarity=0.195 Sum_probs=106.8
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFC 154 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 154 (326)
.+++|++|++.+| +++.+++ ..+..+++|+.|+++++. +..+.. .....+++|+.|++.++..+..++
T Consensus 150 ~l~~L~~L~l~~n-~l~~~~~-~~l~~l~~L~~L~l~~n~-i~~~~~---------~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 150 GLNSLEQLTLEKC-NLTSIPT-EALSHLHGLIVLRLRHLN-INAIRD---------YSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp TCTTCCEEEEESC-CCSSCCH-HHHTTCTTCCEEEEESCC-CCEECT---------TCSCSCTTCCEEEEECCTTCCEEC
T ss_pred CCCCCCEEECCCC-cCcccCh-hHhcccCCCcEEeCCCCc-CcEeCh---------hhcccCcccceeeCCCCccccccC
Confidence 3455555555555 2333332 224455555555555543 222211 011234678888888877777666
Q ss_pred cccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeeccccee
Q 020456 155 NFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYL 234 (326)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 234 (326)
. ......+|++|++++| +++.++ ......++ +|+.|++ .++. ++.+.... ...+++|+.|
T Consensus 218 ~---~~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~---~L~~L~L-s~n~-l~~~~~~~----------~~~l~~L~~L 277 (477)
T 2id5_A 218 P---NCLYGLNLTSLSITHC-NLTAVP-YLAVRHLV---YLRFLNL-SYNP-ISTIEGSM----------LHELLRLQEI 277 (477)
T ss_dssp T---TTTTTCCCSEEEEESS-CCCSCC-HHHHTTCT---TCCEEEC-CSSC-CCEECTTS----------CTTCTTCCEE
T ss_pred c---ccccCccccEEECcCC-cccccC-HHHhcCcc---ccCeeEC-CCCc-CCccChhh----------ccccccCCEE
Confidence 5 3334457888888876 455553 22333455 8888888 7665 44433221 3356788999
Q ss_pred ecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEecccc
Q 020456 235 TLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 235 ~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 290 (326)
++.++ .++.+...... .+++|++|+++++ .++.++. .+..+++|++|++++++
T Consensus 278 ~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 278 QLVGG-QLAVVEPYAFR-GLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ECCSS-CCSEECTTTBT-TCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ECCCC-ccceECHHHhc-CcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 98885 45555433332 6889999999776 5555665 34568899999998775
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.48 E-value=1.5e-12 Score=122.87 Aligned_cols=236 Identities=18% Similarity=0.196 Sum_probs=131.0
Q ss_pred cCCcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEe
Q 020456 6 QGIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVD 85 (326)
Q Consensus 6 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~ 85 (326)
..+.++++|++|++.+.. +...... .+..+++|++|++.++. +..++... ...+++|++|+++
T Consensus 50 ~~~~~l~~L~~L~L~~n~---i~~~~~~----------~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls 112 (477)
T 2id5_A 50 DEFASFPHLEELELNENI---VSAVEPG----------AFNNLFNLRTLGLRSNR-LKLIPLGV---FTGLSNLTKLDIS 112 (477)
T ss_dssp TTTTTCTTCCEEECTTSC---CCEECTT----------TTTTCTTCCEEECCSSC-CCSCCTTS---STTCTTCCEEECT
T ss_pred hHccCCCCCCEEECCCCc---cCEeChh----------hhhCCccCCEEECCCCc-CCccCccc---ccCCCCCCEEECC
Confidence 356789999999998322 2222111 13347888888887654 44433322 1456788888888
Q ss_pred cCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccc---------
Q 020456 86 DCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNF--------- 156 (326)
Q Consensus 86 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~--------- 156 (326)
++. +....+.. +..+++|++|+++++. +..+.+. ....+++|+.|++.++. ++.++..
T Consensus 113 ~n~-i~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 113 ENK-IVILLDYM-FQDLYNLKSLEVGDND-LVYISHR---------AFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLI 179 (477)
T ss_dssp TSC-CCEECTTT-TTTCTTCCEEEECCTT-CCEECTT---------SSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCC
T ss_pred CCc-cccCChhH-ccccccCCEEECCCCc-cceeChh---------hccCCCCCCEEECCCCc-CcccChhHhcccCCCc
Confidence 874 44544432 5677888888887753 3322110 01123455555555542 3322210
Q ss_pred -------------cccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCcccc
Q 020456 157 -------------TENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVK 223 (326)
Q Consensus 157 -------------~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~ 223 (326)
...+..+++|++|++++|+.+..+++.. .. .. +|++|++ .+|. ++.+.. .
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~-~~---~L~~L~l-~~n~-l~~~~~----------~ 242 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-LY-GL---NLTSLSI-THCN-LTAVPY----------L 242 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT-TT-TC---CCSEEEE-ESSC-CCSCCH----------H
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc-cc-Cc---cccEEEC-cCCc-ccccCH----------H
Confidence 0023344455555555554444432211 11 11 4555555 4443 222211 1
Q ss_pred ceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 224 GCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 224 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
....+++|++|++.++. ++.++..... .+++|++|.++++.--...|..+..+++|++|++++|.
T Consensus 243 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNP-ISTIEGSMLH-ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp HHTTCTTCCEEECCSSC-CCEECTTSCT-TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred HhcCccccCeeECCCCc-CCccChhhcc-ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 13346788899998865 5666554332 78899999998775444345566788999999999883
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.48 E-value=8.1e-13 Score=128.27 Aligned_cols=61 Identities=15% Similarity=0.060 Sum_probs=36.3
Q ss_pred eecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCC-CccEEEecccc
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTP-MLNKVNVTEEE 290 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~-~L~~L~l~~c~ 290 (326)
.+++|++|++.++.-....+.... .+++|++|+++++. ++.+|..+..++ +|+++++++++
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYN--QLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTT--TCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred ccccCCEEECCCCcCCCcCHHHcc--CCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 456677777776633222232222 56677777776664 556776655555 47777777654
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.47 E-value=1.1e-13 Score=129.75 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=48.1
Q ss_pred eecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCccccccCchHHH
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLNDT 306 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 306 (326)
.+++|++|++.++ .++.++..... .+++|++|+++++.--...|..+..+++|++|++++|.-. ......+..+++
T Consensus 321 ~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~ 396 (455)
T 3v47_A 321 GLTHLLKLNLSQN-FLGSIDSRMFE-NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK--SVPDGIFDRLTS 396 (455)
T ss_dssp TCTTCCEEECCSS-CCCEECGGGGT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTT
T ss_pred CcccCCEEECCCC-ccCCcChhHhc-CcccCCEEECCCCcccccChhhccccccccEEECCCCccc--cCCHhHhccCCc
Confidence 3466677777665 33444332221 5678888888776433333556667788888888876322 111222334456
Q ss_pred HHHHHHhhh
Q 020456 307 IKQLFNEIV 315 (326)
Q Consensus 307 l~~l~i~~~ 315 (326)
|+.+.+++.
T Consensus 397 L~~L~l~~N 405 (455)
T 3v47_A 397 LQKIWLHTN 405 (455)
T ss_dssp CCEEECCSS
T ss_pred ccEEEccCC
Confidence 666666554
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.46 E-value=2.2e-13 Score=131.13 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=80.3
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccc
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFD 215 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~ 215 (326)
+++|+.|++.++. +....... .+..+++|++|++++|. +....+.. ...++ +|++|++ .+|.-.....+.
T Consensus 395 l~~L~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~---~L~~L~l-~~n~l~~~~~p~-- 464 (570)
T 2z63_A 395 LEQLEHLDFQHSN-LKQMSEFS-VFLSLRNLIYLDISHTH-TRVAFNGI-FNGLS---SLEVLKM-AGNSFQENFLPD-- 464 (570)
T ss_dssp CTTCCEEECTTSE-EESCTTSC-TTTTCTTCCEEECTTSC-CEECCTTT-TTTCT---TCCEEEC-TTCEEGGGEECS--
T ss_pred cCCCCEEEccCCc-cccccchh-hhhcCCCCCEEeCcCCc-ccccchhh-hhcCC---cCcEEEC-cCCcCccccchh--
Confidence 4577777777654 22221100 34567778888887763 33332222 22344 7888888 777643211111
Q ss_pred cccCccccceeeecccceeecccCCCccee-cCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEecccc
Q 020456 216 EKVGEEVKGCIVFERMNYLTLDCLPSLTSF-CLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 216 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 290 (326)
....+++|++|++.+|. ++.+ +.... .+++|++|+++++ .++.++. .+..+++|++|++++++
T Consensus 465 --------~~~~l~~L~~L~l~~n~-l~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 465 --------IFTELRNLTFLDLSQCQ-LEQLSPTAFN--SLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp --------CCTTCTTCCEEECTTSC-CCEECTTTTT--TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------hhhcccCCCEEECCCCc-cccCChhhhh--cccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 13456889999998875 4444 33332 6789999999887 4555554 55678899999998874
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.46 E-value=1.6e-13 Score=133.17 Aligned_cols=156 Identities=10% Similarity=-0.009 Sum_probs=90.8
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccc
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFD 215 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~ 215 (326)
+++|+.|+++++.-....+. ..+..+++|+.|++++|. +....+..+ ..++ +|++|++ .+|.-...+.+.
T Consensus 398 l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~---~L~~L~l-~~n~l~~~~~~~-- 467 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDISYTN-TKIDFDGIF-LGLT---SLNTLKM-AGNSFKDNTLSN-- 467 (606)
T ss_dssp CTTCCEEECTTSEEESTTTT--TTTTTCTTCCEEECTTSC-CEECCTTTT-TTCT---TCCEEEC-TTCEEGGGEECS--
T ss_pred CCCCCeeECCCCccCCccCh--hhhhccccCCEEECcCCC-CCccchhhh-cCCC---CCCEEEC-CCCcCCCcchHH--
Confidence 45666676666542222220 034556777777777764 333322222 2344 7777777 666533322221
Q ss_pred cccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCc
Q 020456 216 EKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDD 295 (326)
Q Consensus 216 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~ 295 (326)
....+++|++|++.++. ++.++..... .+++|++|+++++.-....|..+..+++|++|++++|.-.
T Consensus 468 --------~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--- 534 (606)
T 3vq2_A 468 --------VFANTTNLTFLDLSKCQ-LEQISWGVFD-TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE--- 534 (606)
T ss_dssp --------CCTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC---
T ss_pred --------hhccCCCCCEEECCCCc-CCccChhhhc-ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc---
Confidence 13456889999999874 4555433322 7889999999888544445677778899999999988422
Q ss_pred cccccCchHH-HHHHHHHhh
Q 020456 296 EGCWEGNLND-TIKQLFNEI 314 (326)
Q Consensus 296 ~~~~~~~~~~-~l~~l~i~~ 314 (326)
.++..+...+ +|+.+.+++
T Consensus 535 ~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 535 TSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CEESCGGGSCTTCCEEECCS
T ss_pred ccCHhHhhhcccCcEEEccC
Confidence 2332233322 466666554
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.46 E-value=2e-13 Score=136.46 Aligned_cols=37 Identities=11% Similarity=0.181 Sum_probs=18.1
Q ss_pred cCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 253 EFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 253 ~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
.+++|+.|+++++.--..+|..+..+++|++|++++|
T Consensus 678 ~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 3445555555444433344444444555555555554
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.45 E-value=1e-12 Score=127.61 Aligned_cols=88 Identities=24% Similarity=0.272 Sum_probs=45.5
Q ss_pred CcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecC
Q 020456 8 IVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDC 87 (326)
Q Consensus 8 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c 87 (326)
+..+++|++|++.+.....+.. .+..+++|++|++.++.... +.+.. ...+++|++|++.+|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~--------------~l~~l~~L~~L~l~~n~l~~-~~~~~---~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPS--------------GLVGLSTLKKLVLSANKFEN-LCQIS---ASNFPSLTHLSIKGN 335 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCS--------------SCCSCTTCCEEECTTCCCSB-GGGGC---GGGCTTCSEEECCSC
T ss_pred hccccCCCEEeccCCccCCCCh--------------hhcccccCCEEECccCCcCc-Cchhh---hhccCcCCEEECCCC
Confidence 5678888888888433222211 12236667777766554322 11111 134566666666666
Q ss_pred CCCCcCCchhHHhhCCCCCEEEEccCc
Q 020456 88 TNMSSAIPANLLRCLNNLRCLEVRNCD 114 (326)
Q Consensus 88 ~~l~~~~~~~~~~~l~~L~~L~l~~c~ 114 (326)
.....+++ ..+..+++|++|+++++.
T Consensus 336 ~~~~~~~~-~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 336 TKRLELGT-GCLENLENLRELDLSHDD 361 (606)
T ss_dssp SSCCBCCS-STTTTCTTCCEEECCSSC
T ss_pred Ccccccch-hhhhccCcCCEEECCCCc
Confidence 43222222 224556666666666543
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.45 E-value=9.6e-13 Score=117.52 Aligned_cols=228 Identities=12% Similarity=0.027 Sum_probs=138.3
Q ss_pred cccCCCccEEEcccCCCcc-cccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccc
Q 020456 45 MIGFCDIEYLQLSDFPCLK-EIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLE 123 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~-~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 123 (326)
+..+++|++|++.++..+. .++... ..+++|++|+++++. ++...+.. +..+++|++|+++++.....++..
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~-l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~- 144 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAI----AKLTQLHYLYITHTN-VSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPS- 144 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGG----GGCTTCSEEEEEEEC-CEEECCGG-GGGCTTCCEEECCSSEEESCCCGG-
T ss_pred HhCCCCCCeeeCCCCCcccccCChhH----hcCCCCCEEECcCCe-eCCcCCHH-HhCCCCCCEEeCCCCccCCcCChH-
Confidence 4457888888888644444 323222 567888888888874 44334432 677888888888876422122111
Q ss_pred ccccccCcCCCCCCCccEEecCCCccccccccccccccccc-cccEEeEecCCCCCccCcchhhhccCCCCCCceEEecc
Q 020456 124 ELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEML-MLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEE 202 (326)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~-~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~ 202 (326)
...+++|+.|+++++.--..++. .+..++ +|+.|+++++ .+....+..+.. + .|++|++ .
T Consensus 145 ---------~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~-l----~L~~L~L-s 205 (313)
T 1ogq_A 145 ---------ISSLPNLVGITFDGNRISGAIPD---SYGSFSKLFTSMTISRN-RLTGKIPPTFAN-L----NLAFVDL-S 205 (313)
T ss_dssp ---------GGGCTTCCEEECCSSCCEEECCG---GGGCCCTTCCEEECCSS-EEEEECCGGGGG-C----CCSEEEC-C
T ss_pred ---------HhcCCCCCeEECcCCcccCcCCH---HHhhhhhcCcEEECcCC-eeeccCChHHhC-C----cccEEEC-c
Confidence 11346888888887653335554 556666 8888888776 344333333332 2 5888888 7
Q ss_pred cCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCcc
Q 020456 203 NFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLN 282 (326)
Q Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~ 282 (326)
++.- +...+. ....+++|+.|++.++.--..++. .. .+++|++|+++++.--..+|..+..+++|+
T Consensus 206 ~N~l-~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~-~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 206 RNML-EGDASV----------LFGSDKNTQKIHLAKNSLAFDLGK-VG--LSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp SSEE-EECCGG----------GCCTTSCCSEEECCSSEECCBGGG-CC--CCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred CCcc-cCcCCH----------HHhcCCCCCEEECCCCceeeecCc-cc--ccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence 6642 222211 134567888999888653323332 22 578999999988765546777777889999
Q ss_pred EEEeccccCCCCccccccCchHHHHHHHHHhhh
Q 020456 283 KVNVTEEEKDDDDEGCWEGNLNDTIKQLFNEIV 315 (326)
Q Consensus 283 ~L~l~~c~~~~~~~~~~~~~~~~~l~~l~i~~~ 315 (326)
+|++++|.-. +.++.. ..+.+|+.+.+.+.
T Consensus 272 ~L~Ls~N~l~--~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 272 SLNVSFNNLC--GEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp EEECCSSEEE--EECCCS-TTGGGSCGGGTCSS
T ss_pred EEECcCCccc--ccCCCC-ccccccChHHhcCC
Confidence 9999887321 122322 34556666666554
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.45 E-value=4.2e-12 Score=114.67 Aligned_cols=56 Identities=11% Similarity=0.210 Sum_probs=29.4
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
+++|++|++.++ .++.++. ...+++|++|++++| .++.++ .+..+++|++|++++|
T Consensus 242 l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 242 LSQLTWLEIGTN-QISDINA---VKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNN 297 (347)
T ss_dssp CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS
T ss_pred CCCCCEEECCCC-ccCCChh---HhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCC
Confidence 455555555554 2333321 114566666666665 344343 2334667777777766
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.45 E-value=6.2e-12 Score=117.72 Aligned_cols=111 Identities=14% Similarity=0.183 Sum_probs=69.5
Q ss_pred ccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccC
Q 020456 160 IIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCL 239 (326)
Q Consensus 160 ~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 239 (326)
+..+++|++|++++| .+....+..+. .++ +|++|++ .++. ++.+.+. ....+++|++|++.++
T Consensus 295 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~---~L~~L~L-s~N~-l~~~~~~----------~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 295 FSHFTDLEQLTLAQN-EINKIDDNAFW-GLT---HLLKLNL-SQNF-LGSIDSR----------MFENLDKLEVLDLSYN 357 (455)
T ss_dssp TTTCTTCCEEECTTS-CCCEECTTTTT-TCT---TCCEEEC-CSSC-CCEECGG----------GGTTCTTCCEEECCSS
T ss_pred cccCCCCCEEECCCC-cccccChhHhc-Ccc---cCCEEEC-CCCc-cCCcChh----------HhcCcccCCEEECCCC
Confidence 344556666666554 33333222222 233 6777777 6654 3333221 1345789999999997
Q ss_pred CCcceecCCCccccCCcccEEEeccCCccccccCC-CCCCCCccEEEecccc
Q 020456 240 PSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEEE 290 (326)
Q Consensus 240 ~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~ 290 (326)
. ++.+...... .+++|++|+++++ .++.+|.. +..+++|++|++++++
T Consensus 358 ~-l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 358 H-IRALGDQSFL-GLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp C-CCEECTTTTT-TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred c-ccccChhhcc-ccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 4 5555433322 7899999999885 56667763 4578999999999884
No 19
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.44 E-value=1.2e-12 Score=116.96 Aligned_cols=154 Identities=10% Similarity=0.034 Sum_probs=107.2
Q ss_pred CCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceecccc
Q 020456 135 LFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLF 214 (326)
Q Consensus 135 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~ 214 (326)
.+++|+.|+++++. ++.++.. .+..+++|+.|+++++ .+....+..+...+. +|++|++ .++. ++.+...
T Consensus 118 ~~~~L~~L~l~~N~-l~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~---~L~~L~L-~~N~-l~~~~~~- 187 (317)
T 3o53_A 118 RGQGKKNIYLANNK-ITMLRDL--DEGCRSRVQYLDLKLN-EIDTVNFAELAASSD---TLEHLNL-QYNF-IYDVKGQ- 187 (317)
T ss_dssp CCSSCEEEECCSSC-CCSGGGB--CTGGGSSEEEEECTTS-CCCEEEGGGGGGGTT---TCCEEEC-TTSC-CCEEECC-
T ss_pred ccCCCCEEECCCCC-CCCccch--hhhccCCCCEEECCCC-CCCcccHHHHhhccC---cCCEEEC-CCCc-Ccccccc-
Confidence 36789999998864 4444321 4567899999999886 566654555544556 9999999 8776 4444222
Q ss_pred ccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCC
Q 020456 215 DEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDD 294 (326)
Q Consensus 215 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~ 294 (326)
..+++|++|++.++ .++.++.... .+++|++|+++++ .++.+|..+..+++|++|++++++-..
T Consensus 188 -----------~~l~~L~~L~Ls~N-~l~~l~~~~~--~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~- 251 (317)
T 3o53_A 188 -----------VVFAKLKTLDLSSN-KLAFMGPEFQ--SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHC- 251 (317)
T ss_dssp -----------CCCTTCCEEECCSS-CCCEECGGGG--GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBH-
T ss_pred -----------cccccCCEEECCCC-cCCcchhhhc--ccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccC-
Confidence 23689999999996 5666765433 7899999999887 677788888889999999999884331
Q ss_pred ccccccCchHHHHHHHHHhh
Q 020456 295 DEGCWEGNLNDTIKQLFNEI 314 (326)
Q Consensus 295 ~~~~~~~~~~~~l~~l~i~~ 314 (326)
+..+.....+..|+.+.+.+
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred cCHHHHHhccccceEEECCC
Confidence 12222233356777777663
No 20
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.44 E-value=9.5e-12 Score=111.66 Aligned_cols=212 Identities=18% Similarity=0.186 Sum_probs=114.7
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc---
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE--- 124 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--- 124 (326)
.++|+.|+++++. +..++... ...+++|++|++++|. ++.+.+.. +..+++|++|+++++. ++.++....
T Consensus 51 ~~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L 123 (330)
T 1xku_A 51 PPDTALLDLQNNK-ITEIKDGD---FKNLKNLHTLILINNK-ISKISPGA-FAPLVKLERLYLSKNQ-LKELPEKMPKTL 123 (330)
T ss_dssp CTTCCEEECCSSC-CCCBCTTT---TTTCTTCCEEECCSSC-CCCBCTTT-TTTCTTCCEEECCSSC-CSBCCSSCCTTC
T ss_pred CCCCeEEECCCCc-CCEeChhh---hccCCCCCEEECCCCc-CCeeCHHH-hcCCCCCCEEECCCCc-CCccChhhcccc
Confidence 4677888887654 44433322 2456788888888773 55554433 5677888888887754 333321100
Q ss_pred --c-------ccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCC
Q 020456 125 --L-------NADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKP 195 (326)
Q Consensus 125 --~-------~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L 195 (326)
+ ..........+++|+.|+++++. ++........+..+++|+.|+++++ .++.++ ..+. . +|
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~-~~~~---~---~L 194 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADT-NITTIP-QGLP---P---SL 194 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSS-CCCSCC-SSCC---T---TC
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCC-ccccCC-cccc---c---cC
Confidence 0 00000001123455555554432 1110000113445566666666554 233332 1111 2 66
Q ss_pred ceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCC
Q 020456 196 QKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGV 275 (326)
Q Consensus 196 ~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 275 (326)
++|++ .++. ++.+.+. ....+++|++|++.++. ++.++..... .+++|++|+++++ .++.+|.++
T Consensus 195 ~~L~l-~~n~-l~~~~~~----------~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~N-~l~~lp~~l 259 (330)
T 1xku_A 195 TELHL-DGNK-ITKVDAA----------SLKGLNNLAKLGLSFNS-ISAVDNGSLA-NTPHLRELHLNNN-KLVKVPGGL 259 (330)
T ss_dssp SEEEC-TTSC-CCEECTG----------GGTTCTTCCEEECCSSC-CCEECTTTGG-GSTTCCEEECCSS-CCSSCCTTT
T ss_pred CEEEC-CCCc-CCccCHH----------HhcCCCCCCEEECCCCc-CceeChhhcc-CCCCCCEEECCCC-cCccCChhh
Confidence 66666 5554 3332211 13345788888888854 5555443322 6788999988777 566788877
Q ss_pred CCCCCccEEEecccc
Q 020456 276 LDTPMLNKVNVTEEE 290 (326)
Q Consensus 276 ~~~~~L~~L~l~~c~ 290 (326)
..+++|++|++++|.
T Consensus 260 ~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 260 ADHKYIQVVYLHNNN 274 (330)
T ss_dssp TTCSSCCEEECCSSC
T ss_pred ccCCCcCEEECCCCc
Confidence 788889999988874
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.43 E-value=5.8e-13 Score=118.97 Aligned_cols=238 Identities=13% Similarity=0.074 Sum_probs=155.7
Q ss_pred cccCCcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEE
Q 020456 4 FSQGIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELE 83 (326)
Q Consensus 4 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~ 83 (326)
++..+..+++|++|++.+ ...+ .+.. ...+..+++|++|+++++.-...++... ..+++|++|+
T Consensus 68 ~~~~l~~l~~L~~L~L~~--~n~l---~~~~-------p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----~~l~~L~~L~ 131 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGG--INNL---VGPI-------PPAIAKLTQLHYLYITHTNVSGAIPDFL----SQIKTLVTLD 131 (313)
T ss_dssp CCGGGGGCTTCSEEEEEE--ETTE---ESCC-------CGGGGGCTTCSEEEEEEECCEEECCGGG----GGCTTCCEEE
T ss_pred cChhHhCCCCCCeeeCCC--CCcc---cccC-------ChhHhcCCCCCEEECcCCeeCCcCCHHH----hCCCCCCEEe
Confidence 344566777777777772 1111 1111 1124458999999999876544444333 5689999999
Q ss_pred EecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccccccccccc
Q 020456 84 VDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEM 163 (326)
Q Consensus 84 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~ 163 (326)
++++. ++...+.. +..+++|++|+++++..-..++.. +....++|+.|+++++.--..++. .+..+
T Consensus 132 Ls~N~-l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~---------l~~l~~~L~~L~L~~N~l~~~~~~---~~~~l 197 (313)
T 1ogq_A 132 FSYNA-LSGTLPPS-ISSLPNLVGITFDGNRISGAIPDS---------YGSFSKLFTSMTISRNRLTGKIPP---TFANL 197 (313)
T ss_dssp CCSSE-EESCCCGG-GGGCTTCCEEECCSSCCEEECCGG---------GGCCCTTCCEEECCSSEEEEECCG---GGGGC
T ss_pred CCCCc-cCCcCChH-HhcCCCCCeEECcCCcccCcCCHH---------HhhhhhcCcEEECcCCeeeccCCh---HHhCC
Confidence 99985 54444443 778999999999997633233221 111223899999998754334444 45556
Q ss_pred ccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcc
Q 020456 164 LMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLT 243 (326)
Q Consensus 164 ~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 243 (326)
+ |+.|+++++ .+....+.. ...++ +|+.|++ .++.-...+ +. ...+++|++|++.++.--.
T Consensus 198 ~-L~~L~Ls~N-~l~~~~~~~-~~~l~---~L~~L~L-~~N~l~~~~-~~-----------~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 198 N-LAFVDLSRN-MLEGDASVL-FGSDK---NTQKIHL-AKNSLAFDL-GK-----------VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp C-CSEEECCSS-EEEECCGGG-CCTTS---CCSEEEC-CSSEECCBG-GG-----------CCCCTTCCEEECCSSCCEE
T ss_pred c-ccEEECcCC-cccCcCCHH-HhcCC---CCCEEEC-CCCceeeec-Cc-----------ccccCCCCEEECcCCcccC
Confidence 5 999999986 444443333 33455 9999999 877632221 11 3356899999999976443
Q ss_pred eecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCC
Q 020456 244 SFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDD 293 (326)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~ 293 (326)
.++.... .+++|++|+++++.--..+|.. ..+++|+.+++++++...
T Consensus 259 ~~p~~l~--~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 259 TLPQGLT--QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CCCGGGG--GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred cCChHHh--cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 5554333 7899999999888655567775 578899999998876443
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.41 E-value=4e-12 Score=116.80 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=28.5
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
+++|++|++.++. +..+.... ...+++|++|++++|. ++..++. .++.+++|++|+++++
T Consensus 68 l~~L~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 68 FRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFNA-IRYLPPH-VFQNVPLLTVLVLERN 127 (390)
T ss_dssp CCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSS
T ss_pred cccCcEEECCCCc-ccccChhh---ccCCCCcCEEECCCCC-CCcCCHH-HhcCCCCCCEEECCCC
Confidence 5566666665543 23222211 1345556666665553 3343332 1445555666655554
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.41 E-value=4.7e-12 Score=111.30 Aligned_cols=207 Identities=11% Similarity=0.041 Sum_probs=140.2
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++|++|+++++. +..+.... ...+++|++|+++++ .++.+.+.. +..+++|++|+++++..+..+.+.
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~~~---~~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~~~----- 99 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPAAS---FRACRNLTILWLHSN-VLARIDAAA-FTGLALLEQLDLSDNAQLRSVDPA----- 99 (285)
T ss_dssp CTTCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSCTTCCCCCTT-----
T ss_pred CCCceEEEeeCCc-CCccCHHH---cccCCCCCEEECCCC-ccceeCHhh-cCCccCCCEEeCCCCCCccccCHH-----
Confidence 5789999998755 44444322 256799999999998 466665443 678999999999988655544211
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
....+++|+.|++.++. ++.+... .+..+++|++|+++++ .++.+.+.. ...++ +|++|++ .++. +
T Consensus 100 ----~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~---~L~~L~l-~~n~-l 165 (285)
T 1ozn_A 100 ----TFHGLGRLHTLHLDRCG-LQELGPG--LFRGLAALQYLYLQDN-ALQALPDDT-FRDLG---NLTHLFL-HGNR-I 165 (285)
T ss_dssp ----TTTTCTTCCEEECTTSC-CCCCCTT--TTTTCTTCCEEECCSS-CCCCCCTTT-TTTCT---TCCEEEC-CSSC-C
T ss_pred ----HhcCCcCCCEEECCCCc-CCEECHh--HhhCCcCCCEEECCCC-cccccCHhH-hccCC---CccEEEC-CCCc-c
Confidence 11235799999999875 4443221 4667899999999986 466553322 33455 8999999 7764 4
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEe
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNV 286 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l 286 (326)
+.+.... ...+++|++|++.++. ++.+...... .+++|++|+++++ .++.++. .+..+++|++|++
T Consensus 166 ~~~~~~~----------~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 166 SSVPERA----------FRGLHSLDRLLLHQNR-VAHVHPHAFR-DLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp CEECTTT----------TTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEEC
T ss_pred cccCHHH----------hcCccccCEEECCCCc-ccccCHhHcc-CcccccEeeCCCC-cCCcCCHHHcccCcccCEEec
Confidence 4443221 2346889999999975 5555332222 6889999999887 4555553 4557899999999
Q ss_pred ccccCC
Q 020456 287 TEEEKD 292 (326)
Q Consensus 287 ~~c~~~ 292 (326)
++++-.
T Consensus 233 ~~N~~~ 238 (285)
T 1ozn_A 233 NDNPWV 238 (285)
T ss_dssp CSSCEE
T ss_pred cCCCcc
Confidence 987543
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.41 E-value=8.3e-12 Score=112.06 Aligned_cols=203 Identities=16% Similarity=0.120 Sum_probs=127.5
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|+++++. +..+ +...+++|++|+++++. ++...+. .+..+++|++|+++++..-..-...
T Consensus 98 ~l~~L~~L~Ls~n~-l~~l------~~~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~---- 164 (330)
T 1xku_A 98 PLVKLERLYLSKNQ-LKEL------PEKMPKTLQELRVHENE-ITKVRKS-VFNGLNQMIVVELGTNPLKSSGIEN---- 164 (330)
T ss_dssp TCTTCCEEECCSSC-CSBC------CSSCCTTCCEEECCSSC-CCBBCHH-HHTTCTTCCEEECCSSCCCGGGBCT----
T ss_pred CCCCCCEEECCCCc-CCcc------ChhhcccccEEECCCCc-ccccCHh-HhcCCccccEEECCCCcCCccCcCh----
Confidence 46677777776543 2332 22334677777777763 5555443 3667888888888776432100000
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
.....+++|+.|++.++. ++.++. . .+++|++|+++++ .++...+..+. .++ +|++|++ .++.
T Consensus 165 ----~~~~~l~~L~~L~l~~n~-l~~l~~---~--~~~~L~~L~l~~n-~l~~~~~~~~~-~l~---~L~~L~L-s~n~- 227 (330)
T 1xku_A 165 ----GAFQGMKKLSYIRIADTN-ITTIPQ---G--LPPSLTELHLDGN-KITKVDAASLK-GLN---NLAKLGL-SFNS- 227 (330)
T ss_dssp ----TGGGGCTTCCEEECCSSC-CCSCCS---S--CCTTCSEEECTTS-CCCEECTGGGT-TCT---TCCEEEC-CSSC-
T ss_pred ----hhccCCCCcCEEECCCCc-cccCCc---c--ccccCCEEECCCC-cCCccCHHHhc-CCC---CCCEEEC-CCCc-
Confidence 011235799999998864 556654 2 2389999999987 46665443333 455 8999999 7765
Q ss_pred cceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCC-------CCC
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVL-------DTP 279 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~-------~~~ 279 (326)
++.+.+.. ...+++|++|++.++ .++.++.... .+++|++|+++++. ++.++.... ..+
T Consensus 228 l~~~~~~~----------~~~l~~L~~L~L~~N-~l~~lp~~l~--~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 228 ISAVDNGS----------LANTPHLRELHLNNN-KLVKVPGGLA--DHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp CCEECTTT----------GGGSTTCCEEECCSS-CCSSCCTTTT--TCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSC
T ss_pred CceeChhh----------ccCCCCCCEEECCCC-cCccCChhhc--cCCCcCEEECCCCc-CCccChhhcCCcccccccc
Confidence 44433211 335689999999997 5667766544 78899999998764 555554221 247
Q ss_pred CccEEEeccccCCC
Q 020456 280 MLNKVNVTEEEKDD 293 (326)
Q Consensus 280 ~L~~L~l~~c~~~~ 293 (326)
.++.+++.+++-..
T Consensus 294 ~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 294 SYSGVSLFSNPVQY 307 (330)
T ss_dssp CCSEEECCSSSSCG
T ss_pred cccceEeecCcccc
Confidence 88999998886443
No 25
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.41 E-value=5e-12 Score=108.24 Aligned_cols=203 Identities=16% Similarity=0.117 Sum_probs=139.8
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++|++|++.++. +..++... ...+++|++|+++++..++.+.+.. +..+++|++|++++|..++.+....
T Consensus 30 ~~~l~~L~l~~n~-l~~i~~~~---~~~l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i~~~~---- 100 (239)
T 2xwt_C 30 PPSTQTLKLIETH-LRTIPSHA---FSNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLTYIDPDA---- 100 (239)
T ss_dssp CTTCCEEEEESCC-CSEECTTT---TTTCTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCCEECTTS----
T ss_pred CCcccEEEEeCCc-ceEECHHH---ccCCCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCeeEcCHHH----
Confidence 3589999998754 55554432 2567899999999986576766533 5788999999999866676653211
Q ss_pred ccCcCCCCCCCccEEecCCCcccccccccccccccccccc---EEeEecCCCCCccCcchhhhccCCCCCCc-eEEeccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLW---SLTIENCPNMETFVSNSVVHVTTDNKKPQ-KLTLEEN 203 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~---~L~l~~C~~l~~~~~~~~~~~~~~~~~L~-~L~i~~~ 203 (326)
...+++|+.|++.++. ++.++. +..+++|+ .|++++++.++.+++.. ...+. +|+ +|++ .+
T Consensus 101 -----f~~l~~L~~L~l~~n~-l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~~~l~---~L~~~L~l-~~ 165 (239)
T 2xwt_C 101 -----LKELPLLKFLGIFNTG-LKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVNA-FQGLC---NETLTLKL-YN 165 (239)
T ss_dssp -----EECCTTCCEEEEEEEC-CCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTTT-TTTTB---SSEEEEEC-CS
T ss_pred -----hCCCCCCCEEeCCCCC-Cccccc----cccccccccccEEECCCCcchhhcCccc-ccchh---cceeEEEc-CC
Confidence 1134689999998764 555553 44566666 99999987788774433 33455 899 9998 76
Q ss_pred CcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccC-CcccEEEeccCCccccccCCCCCCCCcc
Q 020456 204 FLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEF-PSLEQVVVRQCPKMKIFSQGVLDTPMLN 282 (326)
Q Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~i~~c~~l~~l~~~~~~~~~L~ 282 (326)
+. ++.+... ....++|++|++.+++.++.++..... .+ ++|++|++++ ..++.+|.. .+++|+
T Consensus 166 n~-l~~i~~~-----------~~~~~~L~~L~L~~n~~l~~i~~~~~~-~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~ 229 (239)
T 2xwt_C 166 NG-FTSVQGY-----------AFNGTKLDAVYLNKNKYLTVIDKDAFG-GVYSGPSLLDVSQ-TSVTALPSK--GLEHLK 229 (239)
T ss_dssp CC-CCEECTT-----------TTTTCEEEEEECTTCTTCCEECTTTTT-TCSBCCSEEECTT-CCCCCCCCT--TCTTCS
T ss_pred CC-CcccCHh-----------hcCCCCCCEEEcCCCCCcccCCHHHhh-ccccCCcEEECCC-CccccCChh--HhccCc
Confidence 64 4444322 111257899999998878888765443 56 8999999977 456667765 478999
Q ss_pred EEEecccc
Q 020456 283 KVNVTEEE 290 (326)
Q Consensus 283 ~L~l~~c~ 290 (326)
+|++.++.
T Consensus 230 ~L~l~~~~ 237 (239)
T 2xwt_C 230 ELIARNTW 237 (239)
T ss_dssp EEECTTC-
T ss_pred eeeccCcc
Confidence 99998763
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.40 E-value=1.4e-11 Score=113.11 Aligned_cols=61 Identities=15% Similarity=0.040 Sum_probs=28.6
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
.+++|++|++.++. +..+++.. ...+++|++|+++++. ++.+++. .+..+++|++|+++++
T Consensus 91 ~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n~-l~~l~~~-~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 91 YAHTIQKLYMGFNA-IRYLPPHV---FQNVPLLTVLVLERND-LSSLPRG-IFHNTPKLTTLSMSNN 151 (390)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSS
T ss_pred CCCCcCEEECCCCC-CCcCCHHH---hcCCCCCCEEECCCCc-cCcCCHH-HhcCCCCCcEEECCCC
Confidence 35666666666543 22222211 1345556666665552 3333322 2345555555555554
No 27
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.39 E-value=3.6e-12 Score=115.55 Aligned_cols=229 Identities=13% Similarity=0.139 Sum_probs=131.9
Q ss_pred CCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCC
Q 020456 12 PKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMS 91 (326)
Q Consensus 12 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 91 (326)
++|++|++.+.. +..+... .+..+++|++|++.++. +..+.... ...+++|++|+++++. ++
T Consensus 52 ~~L~~L~l~~n~---i~~~~~~----------~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n~-l~ 113 (353)
T 2z80_A 52 EAVKSLDLSNNR---ITYISNS----------DLQRCVNLQALVLTSNG-INTIEEDS---FSSLGSLEHLDLSYNY-LS 113 (353)
T ss_dssp TTCCEEECTTSC---CCEECTT----------TTTTCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECCSSC-CS
T ss_pred ccCcEEECCCCc---CcccCHH----------HhccCCCCCEEECCCCc-cCccCHhh---cCCCCCCCEEECCCCc-CC
Confidence 588999988332 2222211 13348889999988763 44433222 2467888999988874 55
Q ss_pred cCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeE
Q 020456 92 SAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTI 171 (326)
Q Consensus 92 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l 171 (326)
.+++ ..++.+++|++|+++++. +..++.. .....+++|+.|+++++..++.++.. .+..+++|++|++
T Consensus 114 ~~~~-~~~~~l~~L~~L~L~~n~-l~~l~~~--------~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l 181 (353)
T 2z80_A 114 NLSS-SWFKPLSSLTFLNLLGNP-YKTLGET--------SLFSHLTKLQILRVGNMDTFTKIQRK--DFAGLTFLEELEI 181 (353)
T ss_dssp SCCH-HHHTTCTTCSEEECTTCC-CSSSCSS--------CSCTTCTTCCEEEEEESSSCCEECTT--TTTTCCEEEEEEE
T ss_pred cCCH-hHhCCCccCCEEECCCCC-CcccCch--------hhhccCCCCcEEECCCCccccccCHH--HccCCCCCCEEEC
Confidence 5544 346778889999888764 3323210 01123567888888777656555321 3456677777777
Q ss_pred ecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCC----------
Q 020456 172 ENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPS---------- 241 (326)
Q Consensus 172 ~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~---------- 241 (326)
+++. +....+..+. .++ +|++|++ .++.. ..+... ....+++|++|++.++.-
T Consensus 182 ~~n~-l~~~~~~~l~-~l~---~L~~L~l-~~n~l-~~~~~~----------~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 182 DASD-LQSYEPKSLK-SIQ---NVSHLIL-HMKQH-ILLLEI----------FVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp EETT-CCEECTTTTT-TCS---EEEEEEE-ECSCS-TTHHHH----------HHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred CCCC-cCccCHHHHh-ccc---cCCeecC-CCCcc-ccchhh----------hhhhcccccEEECCCCcccccccccccc
Confidence 7753 4444233222 233 6666666 55442 211100 011134444554444321
Q ss_pred ----------------c-----ceecCCCccccCCcccEEEeccCCccccccCCC-CCCCCccEEEecccc
Q 020456 242 ----------------L-----TSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGV-LDTPMLNKVNVTEEE 290 (326)
Q Consensus 242 ----------------l-----~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~L~l~~c~ 290 (326)
+ ..++... ..+++|++|+++++ .++.+|..+ ..+++|++|++++++
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l--~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLL--NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHH--HTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccchhhccccccccccCcchhhhHHHH--hcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 0 0111111 25789999999877 566788865 679999999999884
No 28
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.39 E-value=1.5e-13 Score=123.63 Aligned_cols=208 Identities=10% Similarity=0.097 Sum_probs=98.1
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
++++.|++.+.. +...+... ..+++|++|++++|. ++.......++.+++|++|++++|..-...+. .
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~----~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~--~---- 137 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEH----FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN--T---- 137 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSC----CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH--H----
T ss_pred ccceEEEcCCcc-ccccchhh----ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH--H----
Confidence 566666666433 22222221 345666666666663 33321122355666666666666531111110 0
Q ss_pred cCcCCCCCCCccEEecCCCccccc--cccccccccccccccEEeEecCCCCCccCcchhhhccCCCC-CCceEEecccCc
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKR--FCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNK-KPQKLTLEENFL 205 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~--~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~-~L~~L~i~~~c~ 205 (326)
+ ..+++|+.|++++|..++. ++. .+..+++|++|++++|+.++..........+ + +|++|++ .+|.
T Consensus 138 ---l-~~~~~L~~L~L~~~~~l~~~~l~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l---~~~L~~L~l-~~~~ 206 (336)
T 2ast_B 138 ---L-AKNSNLVRLNLSGCSGFSEFALQT---LLSSCSRLDELNLSWCFDFTEKHVQVAVAHV---SETITQLNL-SGYR 206 (336)
T ss_dssp ---H-TTCTTCSEEECTTCBSCCHHHHHH---HHHHCTTCCEEECCCCTTCCHHHHHHHHHHS---CTTCCEEEC-CSCG
T ss_pred ---H-hcCCCCCEEECCCCCCCCHHHHHH---HHhcCCCCCEEcCCCCCCcChHHHHHHHHhc---ccCCCEEEe-CCCc
Confidence 0 0235666666666655542 222 3445666666666666555542111111111 2 5666666 6664
Q ss_pred -ccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccc-cCCCCCCCCccE
Q 020456 206 -LADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIF-SQGVLDTPMLNK 283 (326)
Q Consensus 206 -~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~ 283 (326)
.++... .......+++|++|++.+|..++....... ..+++|++|++++|..+..- ...+..+++|++
T Consensus 207 ~~~~~~~---------l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 207 KNLQKSD---------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp GGSCHHH---------HHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred ccCCHHH---------HHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 232100 000022346666666666654432221111 14566666666666533221 012334666666
Q ss_pred EEeccc
Q 020456 284 VNVTEE 289 (326)
Q Consensus 284 L~l~~c 289 (326)
|++++|
T Consensus 277 L~l~~~ 282 (336)
T 2ast_B 277 LQVFGI 282 (336)
T ss_dssp EECTTS
T ss_pred EeccCc
Confidence 666666
No 29
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.39 E-value=1.9e-13 Score=122.93 Aligned_cols=185 Identities=16% Similarity=0.138 Sum_probs=105.5
Q ss_pred cCCCccEEEcccCCCccc-ccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcce--ecccc
Q 020456 47 GFCDIEYLQLSDFPCLKE-IWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEE--VLHLE 123 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~-~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~ 123 (326)
.+++|++|+++++.-... ++... ..+++|++|++++|. +++..+.. +..+++|++|++++|..+.. +..
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~----~~~~~L~~L~L~~~~-l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~-- 162 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGIL----SQCSKLQNLSLEGLR-LSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQT-- 162 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHH----TTBCCCSEEECTTCB-CCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHH--
T ss_pred cCCCCCEEEccCCCcCHHHHHHHH----hhCCCCCEEeCcCcc-cCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHH--
Confidence 467788888877652211 22111 456788888888774 44333332 55678888888887754432 111
Q ss_pred ccccccCcCCCCCCCccEEecCCCccccc--cccccccccccc-cccEEeEecCC-CCCccCcchhhhccCCCCCCceEE
Q 020456 124 ELNADKEHISPLFPKLSELRLIDLPKLKR--FCNFTENIIEML-MLWSLTIENCP-NMETFVSNSVVHVTTDNKKPQKLT 199 (326)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--~~~~~~~~~~~~-~L~~L~l~~C~-~l~~~~~~~~~~~~~~~~~L~~L~ 199 (326)
....+++|++|++++|..++. ++. .+..++ +|++|++++|. .+++.........++ +|++|+
T Consensus 163 --------~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~---~L~~L~ 228 (336)
T 2ast_B 163 --------LLSSCSRLDELNLSWCFDFTEKHVQV---AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP---NLVHLD 228 (336)
T ss_dssp --------HHHHCTTCCEEECCCCTTCCHHHHHH---HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT---TCSEEE
T ss_pred --------HHhcCCCCCEEcCCCCCCcChHHHHH---HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC---CCCEEe
Confidence 001245788888887755653 222 345677 78888887775 444321222333455 788888
Q ss_pred ecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccC
Q 020456 200 LEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQC 265 (326)
Q Consensus 200 i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 265 (326)
+ .+|..++..... ....+++|++|++.+|..+........ ..+++|++|++++|
T Consensus 229 l-~~~~~l~~~~~~----------~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 L-SDSVMLKNDCFQ----------EFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI 282 (336)
T ss_dssp C-TTCTTCCGGGGG----------GGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS
T ss_pred C-CCCCcCCHHHHH----------HHhCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc
Confidence 8 777644322111 133457788888888764433221111 15778888888777
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.38 E-value=4.1e-12 Score=112.76 Aligned_cols=206 Identities=14% Similarity=0.083 Sum_probs=115.0
Q ss_pred cCCCccEEEcccCCCcccc---cccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccc
Q 020456 47 GFCDIEYLQLSDFPCLKEI---WHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLE 123 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~---~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 123 (326)
.+++|++|++.++.- ..+ .... ..+++|++|+++++. +..++.. +..+++|++|+++++. +..+...
T Consensus 50 ~l~~L~~L~L~~n~l-~~~~~~~~~~----~~~~~L~~L~Ls~n~-i~~l~~~--~~~l~~L~~L~l~~n~-l~~~~~~- 119 (306)
T 2z66_A 50 KLTQLTKLSLSSNGL-SFKGCCSQSD----FGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHSN-LKQMSEF- 119 (306)
T ss_dssp TCTTCSEEECCSSCC-CEEEEEEHHH----HSCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTSE-EESSTTT-
T ss_pred ccccCCEEECCCCcc-CcccCccccc----ccccccCEEECCCCc-cccChhh--cCCCCCCCEEECCCCc-ccccccc-
Confidence 356666666665432 211 1111 234666666666663 3333222 4456667777666643 2211110
Q ss_pred ccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCc-cCcchhhhccCCCCCCceEEecc
Q 020456 124 ELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMET-FVSNSVVHVTTDNKKPQKLTLEE 202 (326)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~-~~~~~~~~~~~~~~~L~~L~i~~ 202 (326)
.....+++|+.|+++++.--...+. .+..+++|++|+++++. +.. ..+.. ...++ +|++|++ .
T Consensus 120 -------~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~l~---~L~~L~L-s 183 (306)
T 2z66_A 120 -------SVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNS-FQENFLPDI-FTELR---NLTFLDL-S 183 (306)
T ss_dssp -------TTTTTCTTCCEEECTTSCCEECSTT---TTTTCTTCCEEECTTCE-EGGGEECSC-CTTCT---TCCEEEC-T
T ss_pred -------hhhhhccCCCEEECCCCcCCccchh---hcccCcCCCEEECCCCc-cccccchhH-HhhCc---CCCEEEC-C
Confidence 1122356788888877643222222 45567888888887763 332 21222 22344 7888888 7
Q ss_pred cCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCC-CCc
Q 020456 203 NFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDT-PML 281 (326)
Q Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~-~~L 281 (326)
++. ++.+.+.. ...+++|++|++.++. ++.++..... .+++|++|+++++.-....|..+..+ ++|
T Consensus 184 ~n~-l~~~~~~~----------~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 184 QCQ-LEQLSPTA----------FNSLSSLQVLNMSHNN-FFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250 (306)
T ss_dssp TSC-CCEECTTT----------TTTCTTCCEEECTTSC-CSBCCSGGGT-TCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred CCC-cCCcCHHH----------hcCCCCCCEEECCCCc-cCccChhhcc-CcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence 764 33332221 3346788899988864 4444432222 67899999998875544455556566 489
Q ss_pred cEEEeccccC
Q 020456 282 NKVNVTEEEK 291 (326)
Q Consensus 282 ~~L~l~~c~~ 291 (326)
++|++++++-
T Consensus 251 ~~L~L~~N~~ 260 (306)
T 2z66_A 251 AFLNLTQNDF 260 (306)
T ss_dssp CEEECTTCCE
T ss_pred CEEEccCCCe
Confidence 9999988743
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.38 E-value=1.8e-11 Score=114.69 Aligned_cols=208 Identities=17% Similarity=0.149 Sum_probs=142.7
Q ss_pred CCcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEec
Q 020456 7 GIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDD 86 (326)
Q Consensus 7 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~ 86 (326)
.+.++++|+.|++.+. .+..+... ....+++|++|++.++. +..++... ...+++|++|++++
T Consensus 94 ~~~~l~~L~~L~Ls~n---~i~~~~~~----------~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~ 156 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRN---SIRQIEVG----------AFNGLASLNTLELFDNW-LTVIPSGA---FEYLSKLRELWLRN 156 (452)
T ss_dssp TTTTCTTCCEEECCSS---CCCEECTT----------TTTTCTTCCEEECCSSC-CSBCCTTT---SSSCTTCCEEECCS
T ss_pred HcCCCCCCCEEECCCC---ccCCcChh----------hccCcccCCEEECCCCc-CCccChhh---hcccCCCCEEECCC
Confidence 3456777777777622 12222111 13458999999999764 45544432 25689999999999
Q ss_pred CCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccc
Q 020456 87 CTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLML 166 (326)
Q Consensus 87 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L 166 (326)
+. ++.+++. .+..+++|++|++++|..++.+... ....+++|+.|+++++ +++.++ .+..+++|
T Consensus 157 N~-l~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~~---------~~~~l~~L~~L~L~~n-~l~~~~----~~~~l~~L 220 (452)
T 3zyi_A 157 NP-IESIPSY-AFNRVPSLMRLDLGELKKLEYISEG---------AFEGLFNLKYLNLGMC-NIKDMP----NLTPLVGL 220 (452)
T ss_dssp CC-CCEECTT-TTTTCTTCCEEECCCCTTCCEECTT---------TTTTCTTCCEEECTTS-CCSSCC----CCTTCTTC
T ss_pred CC-cceeCHh-HHhcCCcccEEeCCCCCCccccChh---------hccCCCCCCEEECCCC-cccccc----cccccccc
Confidence 85 6666543 3778999999999998888766321 1123579999999987 466655 46778999
Q ss_pred cEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceec
Q 020456 167 WSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFC 246 (326)
Q Consensus 167 ~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 246 (326)
+.|+++++ .+..+.+.. ...+. +|+.|++ .++. ++.+.+.. ...+++|+.|++.++ .++.++
T Consensus 221 ~~L~Ls~N-~l~~~~~~~-~~~l~---~L~~L~L-~~n~-l~~~~~~~----------~~~l~~L~~L~L~~N-~l~~~~ 282 (452)
T 3zyi_A 221 EELEMSGN-HFPEIRPGS-FHGLS---SLKKLWV-MNSQ-VSLIERNA----------FDGLASLVELNLAHN-NLSSLP 282 (452)
T ss_dssp CEEECTTS-CCSEECGGG-GTTCT---TCCEEEC-TTSC-CCEECTTT----------TTTCTTCCEEECCSS-CCSCCC
T ss_pred cEEECcCC-cCcccCccc-ccCcc---CCCEEEe-CCCc-CceECHHH----------hcCCCCCCEEECCCC-cCCccC
Confidence 99999986 566664433 33455 9999999 7765 44433221 335689999999986 677776
Q ss_pred CCCccccCCcccEEEeccCC
Q 020456 247 LGNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 247 ~~~~~~~~~~L~~L~i~~c~ 266 (326)
..... .+++|++|++.+.+
T Consensus 283 ~~~~~-~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 283 HDLFT-PLRYLVELHLHHNP 301 (452)
T ss_dssp TTSST-TCTTCCEEECCSSC
T ss_pred hHHhc-cccCCCEEEccCCC
Confidence 65433 68899999998755
No 32
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.38 E-value=1.6e-11 Score=114.61 Aligned_cols=203 Identities=14% Similarity=0.194 Sum_probs=145.4
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++++.|+++++. +..+.... ...+++|++|+++++. ++.+.+. .+..+++|++|+++++. +..++.
T Consensus 63 ~~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~Ls~n~-i~~i~~~-~~~~l~~L~~L~L~~n~-l~~~~~------ 129 (440)
T 3zyj_A 63 STNTRLLNLHENQ-IQIIKVNS---FKHLRHLEILQLSRNH-IRTIEIG-AFNGLANLNTLELFDNR-LTTIPN------ 129 (440)
T ss_dssp CTTCSEEECCSCC-CCEECTTT---TSSCSSCCEEECCSSC-CCEECGG-GGTTCSSCCEEECCSSC-CSSCCT------
T ss_pred CCCCcEEEccCCc-CCeeCHHH---hhCCCCCCEEECCCCc-CCccChh-hccCCccCCEEECCCCc-CCeeCH------
Confidence 4789999998755 44444332 2578999999999984 6666554 37789999999999864 443321
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
.....+++|+.|++++.. ++.++.. .+..+++|++|++++|..+..+... ....+. +|++|++ .++. +
T Consensus 130 ---~~~~~l~~L~~L~L~~N~-i~~~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~---~L~~L~L-~~n~-l 197 (440)
T 3zyj_A 130 ---GAFVYLSKLKELWLRNNP-IESIPSY--AFNRIPSLRRLDLGELKRLSYISEG-AFEGLS---NLRYLNL-AMCN-L 197 (440)
T ss_dssp ---TTSCSCSSCCEEECCSCC-CCEECTT--TTTTCTTCCEEECCCCTTCCEECTT-TTTTCS---SCCEEEC-TTSC-C
T ss_pred ---hHhhccccCceeeCCCCc-ccccCHH--HhhhCcccCEeCCCCCCCcceeCcc-hhhccc---ccCeecC-CCCc-C
Confidence 112245799999999864 5555432 4667899999999999888887443 334555 9999999 8875 4
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccc-cCCCCCCCCccEEEe
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIF-SQGVLDTPMLNKVNV 286 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~L~l 286 (326)
+.+.. ...+++|+.|++.++ .++.+...... .+++|++|++.++. ++.+ +..+..+++|++|++
T Consensus 198 ~~~~~------------~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 198 REIPN------------LTPLIKLDELDLSGN-HLSAIRPGSFQ-GLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp SSCCC------------CTTCSSCCEEECTTS-CCCEECTTTTT-TCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEEC
T ss_pred ccccc------------cCCCcccCEEECCCC-ccCccChhhhc-cCccCCEEECCCCc-eeEEChhhhcCCCCCCEEEC
Confidence 43321 335689999999997 56666544433 78999999998764 4444 446667999999999
Q ss_pred cccc
Q 020456 287 TEEE 290 (326)
Q Consensus 287 ~~c~ 290 (326)
+++.
T Consensus 263 ~~N~ 266 (440)
T 3zyj_A 263 AHNN 266 (440)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 9983
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=7.4e-12 Score=118.61 Aligned_cols=153 Identities=10% Similarity=0.036 Sum_probs=105.9
Q ss_pred CCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceecccc
Q 020456 135 LFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLF 214 (326)
Q Consensus 135 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~ 214 (326)
.+++|+.|+++++. +..+... .+..+++|+.|+++++ .+....+..+...++ +|++|++ .++. ++.+.+.
T Consensus 118 ~l~~L~~L~L~~N~-l~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~---~L~~L~L-s~N~-l~~~~~~- 187 (487)
T 3oja_A 118 RGQGKKNIYLANNK-ITMLRDL--DEGCRSRVQYLDLKLN-EIDTVNFAELAASSD---TLEHLNL-QYNF-IYDVKGQ- 187 (487)
T ss_dssp CCSSCEEEECCSSC-CCSGGGB--CGGGGSSEEEEECTTS-CCCEEEGGGGGGGTT---TCCEEEC-TTSC-CCEEECC-
T ss_pred ccCCCCEEECCCCC-CCCCCch--hhcCCCCCCEEECCCC-CCCCcChHHHhhhCC---cccEEec-CCCc-ccccccc-
Confidence 35789999998865 4433221 5567899999999886 566654555554556 9999999 8776 4444222
Q ss_pred ccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCC
Q 020456 215 DEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDD 294 (326)
Q Consensus 215 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~ 294 (326)
..+++|++|++.++ .++.++.... .+++|+.|+++++ .+..+|..+..+++|+.|++++++-..
T Consensus 188 -----------~~l~~L~~L~Ls~N-~l~~~~~~~~--~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c- 251 (487)
T 3oja_A 188 -----------VVFAKLKTLDLSSN-KLAFMGPEFQ--SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHC- 251 (487)
T ss_dssp -----------CCCTTCCEEECCSS-CCCEECGGGG--GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCH-
T ss_pred -----------ccCCCCCEEECCCC-CCCCCCHhHc--CCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcC-
Confidence 24689999999996 4677765433 7899999999875 566788888789999999999884331
Q ss_pred ccccccCchHHHHHHHHHh
Q 020456 295 DEGCWEGNLNDTIKQLFNE 313 (326)
Q Consensus 295 ~~~~~~~~~~~~l~~l~i~ 313 (326)
..++........++.+.+.
T Consensus 252 ~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEecc
Confidence 1222223334667766664
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=1.8e-12 Score=130.25 Aligned_cols=81 Identities=10% Similarity=0.091 Sum_probs=48.6
Q ss_pred eecccceeecccCCCcceecCCCccccCCcccEEEecc------CCccccccCCCCCCCCccEEEeccccCCCCcccccc
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQ------CPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWE 300 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~------c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~ 300 (326)
.+++|+.|++.++ .++.+|.... .+++|+.|.+++ +.-...+|..+..+++|++|++++|.- ..++..
T Consensus 751 ~l~~L~~L~Ls~N-~L~~lp~~l~--~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L---~~Ip~~ 824 (876)
T 4ecn_A 751 TLPYLSNMDVSYN-CFSSFPTQPL--NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI---RKVDEK 824 (876)
T ss_dssp TCTTCCEEECCSS-CCSSCCCGGG--GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC---CBCCSC
T ss_pred cCCCcCEEEeCCC-CCCccchhhh--cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC---CccCHh
Confidence 4577777777775 3444554333 677888888865 333445676676788888888887743 233322
Q ss_pred CchHHHHHHHHHhhh
Q 020456 301 GNLNDTIKQLFNEIV 315 (326)
Q Consensus 301 ~~~~~~l~~l~i~~~ 315 (326)
.. ++|+.+.+++.
T Consensus 825 l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 825 LT--PQLYILDIADN 837 (876)
T ss_dssp CC--SSSCEEECCSC
T ss_pred hc--CCCCEEECCCC
Confidence 22 25555555443
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.36 E-value=1.7e-11 Score=117.86 Aligned_cols=251 Identities=10% Similarity=0.031 Sum_probs=164.8
Q ss_pred cCCcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEe
Q 020456 6 QGIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVD 85 (326)
Q Consensus 6 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~ 85 (326)
..+..+++|+.|++.+........+ ...+ +|++|++.++... . ++...+++|++|++.
T Consensus 276 ~~~~~l~~L~~L~l~~~~l~~l~~~--------------~~~~-~L~~L~l~~n~~~-~------l~~~~l~~L~~L~l~ 333 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTIERVKDF--------------SYNF-GWQHLELVNCKFG-Q------FPTLKLKSLKRLTFT 333 (570)
T ss_dssp TTTGGGTTCSEEEEESCEECSCCBC--------------CSCC-CCSEEEEESCBCS-S------CCBCBCSSCCEEEEE
T ss_pred hhhcCcCcccEEEecCccchhhhhh--------------hccC-CccEEeeccCccc-c------cCcccccccCEEeCc
Confidence 4466789999999994332222221 2236 9999999987643 3 334578999999999
Q ss_pred cCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccccccccccccc
Q 020456 86 DCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLM 165 (326)
Q Consensus 86 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~ 165 (326)
++... ...+. ..+++|++|+++++. +........ ....+++|+.|++.++. +..++. .+..+++
T Consensus 334 ~n~~~-~~~~~---~~~~~L~~L~l~~n~-l~~~~~~~~-------~~~~~~~L~~L~l~~n~-l~~~~~---~~~~l~~ 397 (570)
T 2z63_A 334 SNKGG-NAFSE---VDLPSLEFLDLSRNG-LSFKGCCSQ-------SDFGTTSLKYLDLSFNG-VITMSS---NFLGLEQ 397 (570)
T ss_dssp SCBSC-CBCCC---CBCTTCCEEECCSSC-CBEEEEEEH-------HHHTCSCCCEEECCSCS-EEEEEE---EEETCTT
T ss_pred CCccc-ccccc---ccCCCCCEEeCcCCc-cCccccccc-------cccccCccCEEECCCCc-cccccc---cccccCC
Confidence 98644 33332 579999999999875 332210000 01135799999999875 445444 4677899
Q ss_pred ccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCc-ce
Q 020456 166 LWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSL-TS 244 (326)
Q Consensus 166 L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~ 244 (326)
|++|++++|. +....+......++ +|++|++ .+|...... +.. ...+++|++|++.++.-. ..
T Consensus 398 L~~L~l~~n~-l~~~~~~~~~~~l~---~L~~L~l-~~n~l~~~~-~~~----------~~~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 398 LEHLDFQHSN-LKQMSEFSVFLSLR---NLIYLDI-SHTHTRVAF-NGI----------FNGLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp CCEEECTTSE-EESCTTSCTTTTCT---TCCEEEC-TTSCCEECC-TTT----------TTTCTTCCEEECTTCEEGGGE
T ss_pred CCEEEccCCc-cccccchhhhhcCC---CCCEEeC-cCCcccccc-hhh----------hhcCCcCcEEECcCCcCcccc
Confidence 9999999874 44443333344555 9999999 888643322 211 335689999999998754 24
Q ss_pred ecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCccccccCchHHHHHHHHHhh
Q 020456 245 FCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLNDTIKQLFNEI 314 (326)
Q Consensus 245 ~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~l~~l~i~~ 314 (326)
++.... .+++|++|++++|.--...|..+..+++|++|++++|. +. ...+..+..+++|+.+.+++
T Consensus 462 ~p~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~-~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 462 LPDIFT--ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LK-SVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp ECSCCT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CS-CCCTTTTTTCTTCCEEECCS
T ss_pred chhhhh--cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CC-CCCHHHhhcccCCcEEEecC
Confidence 554333 78999999999886544447777789999999999983 22 12222333445555555544
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.36 E-value=2.8e-11 Score=113.84 Aligned_cols=123 Identities=11% Similarity=0.157 Sum_probs=73.9
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccc
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFD 215 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~ 215 (326)
+++|+.|+++++. +..++ .+..+++|+.|++++| .+..+.+ ...++ +|+.|++ .+|. +..+.+
T Consensus 264 l~~L~~L~l~~n~-l~~~~----~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~---~L~~L~L-~~n~-l~~~~~--- 326 (466)
T 1o6v_A 264 LTKLTELKLGANQ-ISNIS----PLAGLTALTNLELNEN-QLEDISP---ISNLK---NLTYLTL-YFNN-ISDISP--- 326 (466)
T ss_dssp CTTCSEEECCSSC-CCCCG----GGTTCTTCSEEECCSS-CCSCCGG---GGGCT---TCSEEEC-CSSC-CSCCGG---
T ss_pred CCCCCEEECCCCc-cCccc----cccCCCccCeEEcCCC-cccCchh---hcCCC---CCCEEEC-cCCc-CCCchh---
Confidence 4567777776653 33332 2455677777777775 3444422 22344 7777777 6664 322211
Q ss_pred cccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 216 EKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 216 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
...+++|++|++.++ .++.++. . ..+++|++|++++|.--...| +..+++|++|++++|.
T Consensus 327 ---------~~~l~~L~~L~l~~n-~l~~~~~-l--~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 327 ---------VSSLTKLQRLFFYNN-KVSDVSS-L--ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp ---------GGGCTTCCEEECCSS-CCCCCGG-G--TTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred ---------hccCccCCEeECCCC-ccCCchh-h--ccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 225678888888887 3454432 1 267888888887775433333 4568888888888873
No 37
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.36 E-value=1.4e-11 Score=105.48 Aligned_cols=203 Identities=14% Similarity=0.123 Sum_probs=140.4
Q ss_pred CCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCC
Q 020456 12 PKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMS 91 (326)
Q Consensus 12 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 91 (326)
++|++|++.+.. +..+... ....+++|++|++.++..+..+.... ...+++|++|++.+|.+++
T Consensus 31 ~~l~~L~l~~n~---l~~i~~~----------~~~~l~~L~~L~l~~n~~l~~i~~~~---f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 31 PSTQTLKLIETH---LRTIPSH----------AFSNLPNISRIYVSIDVTLQQLESHS---FYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp TTCCEEEEESCC---CSEECTT----------TTTTCTTCCEEEEECCSSCCEECTTT---EESCTTCCEEEEEEETTCC
T ss_pred CcccEEEEeCCc---ceEECHH----------HccCCCCCcEEeCCCCCCcceeCHhH---cCCCcCCcEEECCCCCCee
Confidence 378888888322 2222221 13358999999999887566655432 2567999999999976787
Q ss_pred cCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCcc---EEecCCCcccccccccccccccccccc-
Q 020456 92 SAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLS---ELRLIDLPKLKRFCNFTENIIEMLMLW- 167 (326)
Q Consensus 92 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~c~~L~~~~~~~~~~~~~~~L~- 167 (326)
.+.+.. +..+++|++|+++++. ++.++.. ..+++|+ .|++++++.++.++.. .+..+++|+
T Consensus 95 ~i~~~~-f~~l~~L~~L~l~~n~-l~~lp~~-----------~~l~~L~~L~~L~l~~N~~l~~i~~~--~~~~l~~L~~ 159 (239)
T 2xwt_C 95 YIDPDA-LKELPLLKFLGIFNTG-LKMFPDL-----------TKVYSTDIFFILEITDNPYMTSIPVN--AFQGLCNETL 159 (239)
T ss_dssp EECTTS-EECCTTCCEEEEEEEC-CCSCCCC-----------TTCCBCCSEEEEEEESCTTCCEECTT--TTTTTBSSEE
T ss_pred EcCHHH-hCCCCCCCEEeCCCCC-Ccccccc-----------ccccccccccEEECCCCcchhhcCcc--cccchhccee
Confidence 776543 6789999999999875 4433221 1234555 9999998788887752 366789999
Q ss_pred EEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeee-cccceeecccCCCcceec
Q 020456 168 SLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVF-ERMNYLTLDCLPSLTSFC 246 (326)
Q Consensus 168 ~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~ 246 (326)
.|+++++ .++.++.. .... . +|++|++ .++..++.+.... ...+ ++|+.|++.+ ..++.++
T Consensus 160 ~L~l~~n-~l~~i~~~-~~~~-~---~L~~L~L-~~n~~l~~i~~~~----------~~~l~~~L~~L~l~~-N~l~~l~ 221 (239)
T 2xwt_C 160 TLKLYNN-GFTSVQGY-AFNG-T---KLDAVYL-NKNKYLTVIDKDA----------FGGVYSGPSLLDVSQ-TSVTALP 221 (239)
T ss_dssp EEECCSC-CCCEECTT-TTTT-C---EEEEEEC-TTCTTCCEECTTT----------TTTCSBCCSEEECTT-CCCCCCC
T ss_pred EEEcCCC-CCcccCHh-hcCC-C---CCCEEEc-CCCCCcccCCHHH----------hhccccCCcEEECCC-CccccCC
Confidence 9999886 56666433 2222 4 8999999 9887677664331 2345 8899999998 4567666
Q ss_pred CCCccccCCcccEEEeccCCc
Q 020456 247 LGNYALEFPSLEQVVVRQCPK 267 (326)
Q Consensus 247 ~~~~~~~~~~L~~L~i~~c~~ 267 (326)
.. .+++|++|.+.+++.
T Consensus 222 ~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 222 SK----GLEHLKELIARNTWT 238 (239)
T ss_dssp CT----TCTTCSEEECTTC--
T ss_pred hh----HhccCceeeccCccC
Confidence 43 578999999988764
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.34 E-value=1e-12 Score=128.50 Aligned_cols=61 Identities=11% Similarity=0.245 Sum_probs=35.3
Q ss_pred eecccceeecccCCCcceecCCCccccCCcccEEEecc------CCccccccCCCCCCCCccEEEecccc
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQ------CPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~------c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
.+++|++|++.++. ++.+|.... .+++|++|++++ +.-.+.+|..+..+++|++|++++|.
T Consensus 511 ~l~~L~~L~Ls~N~-l~~ip~~~~--~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 511 TLPYLVGIDLSYNS-FSKFPTQPL--NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp TCTTCCEEECCSSC-CSSCCCGGG--GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred cCCCcCEEECCCCC-CCCcChhhh--cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 44666666666643 333444333 566777777743 22234466666667777777777764
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.34 E-value=8.2e-12 Score=122.15 Aligned_cols=118 Identities=18% Similarity=0.191 Sum_probs=64.2
Q ss_pred ccccCCCccEEEcccCCCccc------------------ccccCCCCCC--CCCCccEEEEecCCCCCcCCchhHHhhCC
Q 020456 44 EMIGFCDIEYLQLSDFPCLKE------------------IWHGQALPVS--FFNNLEELEVDDCTNMSSAIPANLLRCLN 103 (326)
Q Consensus 44 ~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 103 (326)
.+..+++|++|+++++. +.. ++... + .+++|++|++++|.....+ |.. +++++
T Consensus 201 ~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l----~~~~l~~L~~L~L~~n~l~~~~-p~~-l~~l~ 273 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDL----KWDNLKDLTDVEVYNCPNLTKL-PTF-LKALP 273 (636)
T ss_dssp GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCC----CGGGCTTCCEEEEECCTTCSSC-CTT-TTTCS
T ss_pred HHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhh----hhcccCCCCEEEecCCcCCccC-hHH-HhcCC
Confidence 35567888888888766 343 44333 4 6788888888888644333 332 67788
Q ss_pred CCCEEEEccCcCcce--eccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecC
Q 020456 104 NLRCLEVRNCDSIEE--VLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENC 174 (326)
Q Consensus 104 ~L~~L~l~~c~~l~~--l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C 174 (326)
+|++|+++++..+.. ++...+... ....+++|+.|+++++. ++.++... .+..+++|+.|+++++
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~----~~~~l~~L~~L~L~~n~-l~~ip~~~-~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALA----DAPVGEKIQIIYIGYNN-LKTFPVET-SLQKMKKLGMLECLYN 340 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHH----HSGGGGTCCEEECCSSC-CSSCCCHH-HHTTCTTCCEEECCSC
T ss_pred CCCEEECcCCCCCccccchHHHHhhh----ccccCCCCCEEECCCCc-CCccCchh-hhccCCCCCEEeCcCC
Confidence 888888888763332 221111000 00012356666665543 33333200 2344555666666554
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.34 E-value=1.9e-11 Score=118.70 Aligned_cols=12 Identities=25% Similarity=0.232 Sum_probs=6.9
Q ss_pred CCCccEEecCCC
Q 020456 136 FPKLSELRLIDL 147 (326)
Q Consensus 136 ~~~L~~L~l~~c 147 (326)
+++|+.|+++++
T Consensus 170 l~~L~~L~L~~N 181 (597)
T 3oja_B 170 TTSLQNLQLSSN 181 (597)
T ss_dssp CTTCCEEECTTS
T ss_pred CCcCcEEECcCC
Confidence 346666666554
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.34 E-value=7.2e-11 Score=106.03 Aligned_cols=200 Identities=16% Similarity=0.150 Sum_probs=98.3
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|+++++. +..++ ...+++|++|++.++. ++.+++. .+..+++|++|+++++..- .... .
T Consensus 100 ~l~~L~~L~L~~n~-l~~l~------~~~~~~L~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~l~~n~l~-~~~~----~ 165 (332)
T 2ft3_A 100 PLRKLQKLYISKNH-LVEIP------PNLPSSLVELRIHDNR-IRKVPKG-VFSGLRNMNCIEMGGNPLE-NSGF----E 165 (332)
T ss_dssp TCTTCCEEECCSSC-CCSCC------SSCCTTCCEEECCSSC-CCCCCSG-GGSSCSSCCEEECCSCCCB-GGGS----C
T ss_pred CcCCCCEEECCCCc-CCccC------ccccccCCEEECCCCc-cCccCHh-HhCCCccCCEEECCCCccc-cCCC----C
Confidence 35566666665433 22222 2233666666666653 4444332 2556777777777665321 1000 0
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
...+ ... +|+.|+++++. ++.++. . .+++|++|+++++ .+....+..+. .++ +|++|++ .++.
T Consensus 166 --~~~~-~~l-~L~~L~l~~n~-l~~l~~---~--~~~~L~~L~l~~n-~i~~~~~~~l~-~l~---~L~~L~L-~~N~- 228 (332)
T 2ft3_A 166 --PGAF-DGL-KLNYLRISEAK-LTGIPK---D--LPETLNELHLDHN-KIQAIELEDLL-RYS---KLYRLGL-GHNQ- 228 (332)
T ss_dssp --TTSS-CSC-CCSCCBCCSSB-CSSCCS---S--SCSSCSCCBCCSS-CCCCCCTTSST-TCT---TCSCCBC-CSSC-
T ss_pred --cccc-cCC-ccCEEECcCCC-CCccCc---c--ccCCCCEEECCCC-cCCccCHHHhc-CCC---CCCEEEC-CCCc-
Confidence 0000 011 56666665543 444443 1 1257777777665 34444322222 333 6777777 6553
Q ss_pred cceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC-CC------CCC
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VL------DTP 279 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~------~~~ 279 (326)
++.+.+.. ...+++|++|++.++ .++.++.... .+++|++|+++++ .++.++.. +. ..+
T Consensus 229 l~~~~~~~----------~~~l~~L~~L~L~~N-~l~~lp~~l~--~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 229 IRMIENGS----------LSFLPTLRELHLDNN-KLSRVPAGLP--DLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp CCCCCTTG----------GGGCTTCCEEECCSS-CCCBCCTTGG--GCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSC
T ss_pred CCcCChhH----------hhCCCCCCEEECCCC-cCeecChhhh--cCccCCEEECCCC-CCCccChhHccccccccccc
Confidence 32222111 234567777777765 4555554432 5677777777654 34444331 11 135
Q ss_pred CccEEEeccccC
Q 020456 280 MLNKVNVTEEEK 291 (326)
Q Consensus 280 ~L~~L~l~~c~~ 291 (326)
.|+++++++++-
T Consensus 295 ~l~~L~l~~N~~ 306 (332)
T 2ft3_A 295 YYNGISLFNNPV 306 (332)
T ss_dssp CBSEEECCSSSS
T ss_pred cccceEeecCcc
Confidence 567777776653
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.32 E-value=1.7e-14 Score=139.56 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=38.1
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCcccc--ccCCCCCCCCccEEEeccccCCCCc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKI--FSQGVLDTPMLNKVNVTEEEKDDDD 295 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~--l~~~~~~~~~L~~L~l~~c~~~~~~ 295 (326)
+++|++|++.+|. ++..........+++|++|++++|+ ++. ++..+..+++|++|++++|. ..+.
T Consensus 462 ~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 462 SPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp CTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred CccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 4667777776654 3221110111257888888888887 432 33333357888888888886 4433
No 43
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.32 E-value=6.4e-11 Score=107.27 Aligned_cols=203 Identities=16% Similarity=0.164 Sum_probs=127.0
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|+++++.....++... ...+++++++.+.++.+++.+.+.. ++.+++|++|+++++. +..++.....
T Consensus 52 ~l~~L~~L~Ls~N~i~~~i~~~~---f~~L~~l~~~l~~~~N~l~~l~~~~-f~~l~~L~~L~l~~n~-l~~~~~~~~~- 125 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEVIEADV---FSNLPKLHEIRIEKANNLLYINPEA-FQNLPNLQYLLISNTG-IKHLPDVHKI- 125 (350)
T ss_dssp TCTTCCEEEEECCTTCCEECTTS---BCSCTTCCEEEEEEETTCCEECTTS-BCCCTTCCEEEEEEEC-CSSCCCCTTC-
T ss_pred CCCCCCEEECcCCCCCCccChhH---hhcchhhhhhhcccCCcccccCchh-hhhccccccccccccc-cccCCchhhc-
Confidence 47788888888766555433322 1345667776666666777665542 5678888888887753 3333221111
Q ss_pred cccCcCCCCCCCccEEecCCCcccccccccccccccc-ccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEM-LMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFL 205 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~-~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~ 205 (326)
...++..|++.++.+++.++.. .+..+ ..++.|+++++ +++.++. ..+. .. +|+++.+ .++.
T Consensus 126 --------~~~~l~~l~l~~~~~i~~l~~~--~f~~~~~~l~~L~L~~N-~i~~i~~-~~f~-~~---~L~~l~l-~~~n 188 (350)
T 4ay9_X 126 --------HSLQKVLLDIQDNINIHTIERN--SFVGLSFESVILWLNKN-GIQEIHN-SAFN-GT---QLDELNL-SDNN 188 (350)
T ss_dssp --------CBSSCEEEEEESCTTCCEECTT--SSTTSBSSCEEEECCSS-CCCEECT-TSST-TE---EEEEEEC-TTCT
T ss_pred --------ccchhhhhhhcccccccccccc--chhhcchhhhhhccccc-cccCCCh-hhcc-cc---chhHHhh-ccCC
Confidence 1135667777777777766542 12223 35677777663 5666532 2222 22 6777887 7777
Q ss_pred ccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEE
Q 020456 206 LADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVN 285 (326)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~ 285 (326)
.++.+.... ...+++|+.|++++. .++.++.. .+.+|++|.+.++..++.+|. +..+++|+.++
T Consensus 189 ~l~~i~~~~----------f~~l~~L~~LdLs~N-~l~~lp~~----~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~ 252 (350)
T 4ay9_X 189 NLEELPNDV----------FHGASGPVILDISRT-RIHSLPSY----GLENLKKLRARSTYNLKKLPT-LEKLVALMEAS 252 (350)
T ss_dssp TCCCCCTTT----------TTTEECCSEEECTTS-CCCCCCSS----SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEE
T ss_pred cccCCCHHH----------hccCcccchhhcCCC-CcCccChh----hhccchHhhhccCCCcCcCCC-chhCcChhhCc
Confidence 777664331 234678888888885 57777753 356888888888888888885 45688888888
Q ss_pred ecc
Q 020456 286 VTE 288 (326)
Q Consensus 286 l~~ 288 (326)
+.+
T Consensus 253 l~~ 255 (350)
T 4ay9_X 253 LTY 255 (350)
T ss_dssp CSC
T ss_pred CCC
Confidence 854
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.32 E-value=6.3e-11 Score=115.00 Aligned_cols=107 Identities=11% Similarity=0.151 Sum_probs=59.1
Q ss_pred ccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccC
Q 020456 160 IIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCL 239 (326)
Q Consensus 160 ~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 239 (326)
+..+++|+.|+++++ .+....+..+. .++ +|+.|++ .++. ++.+... ...+++|+.|++.++
T Consensus 250 l~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~---~L~~L~L-s~N~-l~~l~~~-----------~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 250 LLNYPGLVEVDLSYN-ELEKIMYHPFV-KMQ---RLERLYI-SNNR-LVALNLY-----------GQPIPTLKVLDLSHN 311 (597)
T ss_dssp GGGCTTCSEEECCSS-CCCEEESGGGT-TCS---SCCEEEC-TTSC-CCEEECS-----------SSCCTTCCEEECCSS
T ss_pred hccCCCCCEEECCCC-ccCCCCHHHhc-Ccc---CCCEEEC-CCCC-CCCCCcc-----------cccCCCCcEEECCCC
Confidence 445566666666654 34443232222 233 6666666 5543 3333211 234577777777775
Q ss_pred CCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 240 PSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 240 ~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
. ++.++.... .+++|++|+++++. +..++ +..+++|++|++++++
T Consensus 312 ~-l~~i~~~~~--~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 312 H-LLHVERNQP--QFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp C-CCCCGGGHH--HHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred C-CCccCcccc--cCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence 3 445554332 56788888887764 34344 3347788888887753
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.32 E-value=8.1e-11 Score=105.67 Aligned_cols=204 Identities=16% Similarity=0.198 Sum_probs=118.1
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++|++|++.++. +..+.... ...+++|++|++++|. ++.+.+.. +..+++|++|+++++. +..++..
T Consensus 53 ~~~l~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~l~~~----- 120 (332)
T 2ft3_A 53 SPDTTLLDLQNND-ISELRKDD---FKGLQHLYALVLVNNK-ISKIHEKA-FSPLRKLQKLYISKNH-LVEIPPN----- 120 (332)
T ss_dssp CTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSSC-CCEECGGG-STTCTTCCEEECCSSC-CCSCCSS-----
T ss_pred CCCCeEEECCCCc-CCccCHhH---hhCCCCCcEEECCCCc-cCccCHhH-hhCcCCCCEEECCCCc-CCccCcc-----
Confidence 4678888887654 34433322 2567888888888874 55654443 6678888888888754 3333211
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCc--cCcchhhhccC---------------
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMET--FVSNSVVHVTT--------------- 190 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~--~~~~~~~~~~~--------------- 190 (326)
.+++|+.|+++++. ++.++.. .+..+++|++|+++++. ++. ..+..+. .+.
T Consensus 121 -------~~~~L~~L~l~~n~-i~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~-~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 121 -------LPSSLVELRIHDNR-IRKVPKG--VFSGLRNMNCIEMGGNP-LENSGFEPGAFD-GLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp -------CCTTCCEEECCSSC-CCCCCSG--GGSSCSSCCEEECCSCC-CBGGGSCTTSSC-SCCCSCCBCCSSBCSSCC
T ss_pred -------ccccCCEEECCCCc-cCccCHh--HhCCCccCCEEECCCCc-cccCCCCccccc-CCccCEEECcCCCCCccC
Confidence 12466666666543 3333321 24455666666666542 221 1111111 000
Q ss_pred --CCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCcc
Q 020456 191 --DNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKM 268 (326)
Q Consensus 191 --~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l 268 (326)
..++|++|++ .++. ++.+. ......+++|++|++.++ .++.++..... .+++|++|+++++ .+
T Consensus 189 ~~~~~~L~~L~l-~~n~-i~~~~----------~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~-~l~~L~~L~L~~N-~l 253 (332)
T 2ft3_A 189 KDLPETLNELHL-DHNK-IQAIE----------LEDLLRYSKLYRLGLGHN-QIRMIENGSLS-FLPTLRELHLDNN-KL 253 (332)
T ss_dssp SSSCSSCSCCBC-CSSC-CCCCC----------TTSSTTCTTCSCCBCCSS-CCCCCCTTGGG-GCTTCCEEECCSS-CC
T ss_pred ccccCCCCEEEC-CCCc-CCccC----------HHHhcCCCCCCEEECCCC-cCCcCChhHhh-CCCCCCEEECCCC-cC
Confidence 0014555555 4432 22221 111345678999999885 45555443322 7899999999876 56
Q ss_pred ccccCCCCCCCCccEEEecccc
Q 020456 269 KIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 269 ~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
+.+|.++..+++|++|+++++.
T Consensus 254 ~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 254 SRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CBCCTTGGGCTTCCEEECCSSC
T ss_pred eecChhhhcCccCCEEECCCCC
Confidence 6788888889999999999874
No 46
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=2.5e-11 Score=122.09 Aligned_cols=97 Identities=8% Similarity=0.047 Sum_probs=61.6
Q ss_pred cccCCc--CCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCccc--ccccCC-C--CCCCC
Q 020456 4 FSQGIV--STPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKE--IWHGQA-L--PVSFF 76 (326)
Q Consensus 4 ~~~~~~--~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~-l--~~~~~ 76 (326)
++..+. ++++|+.|.+.++... +... ..+..+++|++|+++++..+.. ++.... + ....+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~------~~iP-------~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l 547 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNM------TQLP-------DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTC------CSCC-------GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTT
T ss_pred CChhhhhccCCCCCEEECcCCCCC------ccCh-------HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccccc
Confidence 556666 8999999999932211 1111 1244588999999988763332 332210 0 12356
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCc
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCD 114 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 114 (326)
++|++|++++|. ++.++....++++++|++|+++++.
T Consensus 548 ~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 548 PKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp TTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred CCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC
Confidence 789999999884 5555541237788999999998865
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.30 E-value=9.3e-11 Score=118.32 Aligned_cols=37 Identities=8% Similarity=0.220 Sum_probs=19.6
Q ss_pred cCCcccEEEeccCCccccccC-CCCCCCCccEEEecccc
Q 020456 253 EFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 253 ~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 290 (326)
.+++|++|+++++ .+..++. .+..+++|++|+++++.
T Consensus 336 ~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 336 GLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC
Confidence 4555666666554 3333333 33446666666666653
No 48
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.30 E-value=1e-10 Score=103.22 Aligned_cols=202 Identities=12% Similarity=0.092 Sum_probs=143.5
Q ss_pred cccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 124 (326)
...+++|+++++.+. .+..++. ...+++++|+++++. ++.+.+. .+..+++|++|+++++. +..+...
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~------~~~~~l~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~-- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPP------DLPKDTTILHLSENL-LYTFSLA-TLMPYTRLTQLNLDRAE-LTKLQVD-- 73 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCS------CCCTTCCEEECTTSC-CSEEEGG-GGTTCTTCCEEECTTSC-CCEEECC--
T ss_pred ccccCCccEEECCCC-CCCcCCC------CCCCCCCEEEcCCCc-CCccCHH-HhhcCCCCCEEECCCCc-cCcccCC--
Confidence 345788899988763 3454333 344789999999985 5555443 37789999999999864 5444321
Q ss_pred cccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC
Q 020456 125 LNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
..+++|+.|++++. .++.++. .+..+++|+.|+++++ .++.+++.. ...++ +|++|++ .++
T Consensus 74 ---------~~l~~L~~L~Ls~N-~l~~l~~---~~~~l~~L~~L~l~~N-~l~~l~~~~-~~~l~---~L~~L~L-~~N 134 (290)
T 1p9a_G 74 ---------GTLPVLGTLDLSHN-QLQSLPL---LGQTLPALTVLDVSFN-RLTSLPLGA-LRGLG---ELQELYL-KGN 134 (290)
T ss_dssp ---------SCCTTCCEEECCSS-CCSSCCC---CTTTCTTCCEEECCSS-CCCCCCSST-TTTCT---TCCEEEC-TTS
T ss_pred ---------CCCCcCCEEECCCC-cCCcCch---hhccCCCCCEEECCCC-cCcccCHHH-HcCCC---CCCEEEC-CCC
Confidence 14579999999885 4666665 5677899999999886 576664333 33455 8999999 776
Q ss_pred cccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEE
Q 020456 205 LLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKV 284 (326)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L 284 (326)
. ++.+.+.. ...+++|+.|++.++ .++.++..... .+++|++|.++++ .++.+|.++...++|+++
T Consensus 135 ~-l~~~~~~~----------~~~l~~L~~L~L~~N-~l~~l~~~~~~-~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 135 E-LKTLPPGL----------LTPTPKLEKLSLANN-NLTELPAGLLN-GLENLDTLLLQEN-SLYTIPKGFFGSHLLPFA 200 (290)
T ss_dssp C-CCCCCTTT----------TTTCTTCCEEECTTS-CCSCCCTTTTT-TCTTCCEEECCSS-CCCCCCTTTTTTCCCSEE
T ss_pred C-CCccChhh----------cccccCCCEEECCCC-cCCccCHHHhc-CcCCCCEEECCCC-cCCccChhhcccccCCeE
Confidence 4 44433221 224588999999985 57777765432 6889999999765 577799888888899999
Q ss_pred EeccccC
Q 020456 285 NVTEEEK 291 (326)
Q Consensus 285 ~l~~c~~ 291 (326)
++.+++-
T Consensus 201 ~L~~Np~ 207 (290)
T 1p9a_G 201 FLHGNPW 207 (290)
T ss_dssp ECCSCCB
T ss_pred EeCCCCc
Confidence 9987743
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.30 E-value=2.2e-10 Score=111.34 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=39.7
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
+++|++|++.++ .++.++. .+++|++|+++++ .++.+|..+..+++|+.|++++++
T Consensus 240 l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 240 PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 466777777775 4555553 4568888888776 566777777778888888888773
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=8e-11 Score=103.33 Aligned_cols=184 Identities=14% Similarity=0.113 Sum_probs=131.7
Q ss_pred CCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccc
Q 020456 74 SFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRF 153 (326)
Q Consensus 74 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 153 (326)
...++|++|+++++. ++.+++.. +..+++|++|+++++. +..+.+. ....+++|+.|+++++..++.+
T Consensus 29 ~~~~~l~~L~l~~n~-i~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 29 GIPAASQRIFLHGNR-ISHVPAAS-FRACRNLTILWLHSNV-LARIDAA---------AFTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp TCCTTCSEEECTTSC-CCEECTTT-TTTCTTCCEEECCSSC-CCEECTT---------TTTTCTTCCEEECCSCTTCCCC
T ss_pred CCCCCceEEEeeCCc-CCccCHHH-cccCCCCCEEECCCCc-cceeCHh---------hcCCccCCCEEeCCCCCCcccc
Confidence 445899999999984 66665443 6789999999999874 4444211 1123579999999998777776
Q ss_pred ccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccce
Q 020456 154 CNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNY 233 (326)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 233 (326)
... .+..+++|++|+++++ .+..+.+.. ...++ +|++|++ .++. ++.+.... ...+++|++
T Consensus 97 ~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~---~L~~L~l-~~n~-l~~~~~~~----------~~~l~~L~~ 157 (285)
T 1ozn_A 97 DPA--TFHGLGRLHTLHLDRC-GLQELGPGL-FRGLA---ALQYLYL-QDNA-LQALPDDT----------FRDLGNLTH 157 (285)
T ss_dssp CTT--TTTTCTTCCEEECTTS-CCCCCCTTT-TTTCT---TCCEEEC-CSSC-CCCCCTTT----------TTTCTTCCE
T ss_pred CHH--HhcCCcCCCEEECCCC-cCCEECHhH-hhCCc---CCCEEEC-CCCc-ccccCHhH----------hccCCCccE
Confidence 332 5677899999999987 455553333 33455 9999999 8775 33332211 234689999
Q ss_pred eecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 234 LTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 234 L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
|++.++ .++.++..... .+++|++|+++++.--...|..+..+++|++|+++++.
T Consensus 158 L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 158 LFLHGN-RISSVPERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp EECCSS-CCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCC-cccccCHHHhc-CccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 999996 57777764332 68999999998876444446777789999999999983
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.28 E-value=3.1e-11 Score=107.06 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=121.9
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|+++++. +..++... ..+++|++|+++++. ++.......+..+++|++|+++++. +..+..
T Consensus 76 ~~~~L~~L~Ls~n~-i~~l~~~~----~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~----- 143 (306)
T 2z66_A 76 GTTSLKYLDLSFNG-VITMSSNF----LGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN----- 143 (306)
T ss_dssp SCSCCCEEECCSCS-EEEEEEEE----ETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECST-----
T ss_pred cccccCEEECCCCc-cccChhhc----CCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCccch-----
Confidence 47999999999765 34444333 467999999999984 5555442347789999999999875 322211
Q ss_pred cccCcCCCCCCCccEEecCCCcccc-ccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLK-RFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFL 205 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~-~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~ 205 (326)
.....+++|+.|+++++.--. .++. .+..+++|++|++++| .++...+..+. .++ +|++|++ .++.
T Consensus 144 ----~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~---~L~~L~L-~~N~ 210 (306)
T 2z66_A 144 ----GIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQC-QLEQLSPTAFN-SLS---SLQVLNM-SHNN 210 (306)
T ss_dssp ----TTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTS-CCCEECTTTTT-TCT---TCCEEEC-TTSC
T ss_pred ----hhcccCcCCCEEECCCCccccccchh---HHhhCcCCCEEECCCC-CcCCcCHHHhc-CCC---CCCEEEC-CCCc
Confidence 011235799999999875333 2343 5677899999999987 56666443333 445 8999999 8776
Q ss_pred ccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccC-CcccEEEeccCC
Q 020456 206 LADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEF-PSLEQVVVRQCP 266 (326)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~i~~c~ 266 (326)
++.+... ....+++|++|++.++.--...+.... .+ ++|++|++++++
T Consensus 211 -l~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 211 -FFSLDTF----------PYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNLTQND 259 (306)
T ss_dssp -CSBCCSG----------GGTTCTTCCEEECTTSCCCBCSSSSCC--CCCTTCCEEECTTCC
T ss_pred -cCccChh----------hccCcccCCEeECCCCCCcccCHHHHH--hhhccCCEEEccCCC
Confidence 3333221 133568999999999754333333222 55 489999998765
No 52
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.27 E-value=1.1e-12 Score=126.97 Aligned_cols=255 Identities=16% Similarity=0.204 Sum_probs=133.4
Q ss_pred cCCCCeeEEEecccCCcccc-------eecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccE
Q 020456 9 VSTPKLHEVQVTEKNEDELR-------HWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEE 81 (326)
Q Consensus 9 ~~~~~L~~L~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~ 81 (326)
..+++|+.|.+. +++... .|.+.....+... ...+++|++|+++++.- ....... + ...+++|++
T Consensus 63 ~~~~~L~~L~L~--~~~~~~~~~l~~~~~~~~~~~~l~~l---~~~~~~L~~L~L~~~~~-~~~~~~~-l-~~~~~~L~~ 134 (594)
T 2p1m_B 63 RRFPKVRSVELK--GKPHFADFNLVPDGWGGYVYPWIEAM---SSSYTWLEEIRLKRMVV-TDDCLEL-I-AKSFKNFKV 134 (594)
T ss_dssp HHCTTCCEEEEE--CSCGGGGGTCSCTTSCCBCHHHHHHH---HHHCTTCCEEEEESCBC-CHHHHHH-H-HHHCTTCCE
T ss_pred hhCCCceEEecc--CCCchhhcccccccccchhhHHHHHH---HHhCCCCCeEEeeCcEE-cHHHHHH-H-HHhCCCCcE
Confidence 357899999999 433222 2222221111111 12488999999998763 3211111 1 125799999
Q ss_pred EEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCc-ccc--ccccccc
Q 020456 82 LEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLP-KLK--RFCNFTE 158 (326)
Q Consensus 82 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~L~--~~~~~~~ 158 (326)
|++.+|..++......+..++++|++|++++|. +.... ... ...+...+++|++|++.+|. .+. .+..
T Consensus 135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~-~~~----l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~--- 205 (594)
T 2p1m_B 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVS-GHW----LSHFPDTYTSLVSLNISCLASEVSFSALER--- 205 (594)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCC-GGG----GGGSCTTCCCCCEEECTTCCSCCCHHHHHH---
T ss_pred EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcc-hHH----HHHHhhcCCcCcEEEecccCCcCCHHHHHH---
Confidence 999999766553334456689999999999986 32210 000 11123356789999998875 111 1111
Q ss_pred cccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC-------------------cccceeccccccccC
Q 020456 159 NIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF-------------------LLADQVQPLFDEKVG 219 (326)
Q Consensus 159 ~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c-------------------~~l~~~~~~~~~~~~ 219 (326)
....+++|++|++++|..+..+ ......++ +|++|.+ ..| ..++.+.........
T Consensus 206 l~~~~~~L~~L~L~~~~~~~~l--~~~~~~~~---~L~~L~l-~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~ 279 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAVPLEKL--ATLLQRAP---QLEELGT-GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279 (594)
T ss_dssp HHHHCTTCCEEECCTTSCHHHH--HHHHHHCT---TCSEEEC-SBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG
T ss_pred HHHhCCCCcEEecCCCCcHHHH--HHHHhcCC---cceEccc-ccccCccchhhHHHHHHHHhcCCCcccccCCcccchh
Confidence 1234688899998888655552 22333444 7777765 443 333333111000000
Q ss_pred ccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEec
Q 020456 220 EEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVT 287 (326)
Q Consensus 220 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~ 287 (326)
........+++|++|++.+|. ++..........+++|++|.+.+|..-..++.....+++|++|++.
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred hHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEe
Confidence 111111245677777777776 4322111111145667777666652211122111124556666553
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.27 E-value=5.8e-12 Score=112.58 Aligned_cols=216 Identities=15% Similarity=0.117 Sum_probs=146.7
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|+++++. +..+.... ...+++|++|++++|. ++...+ +..+++|++|+++++. +..+.
T Consensus 32 ~~~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~Ls~n~-l~~l~------ 96 (317)
T 3o53_A 32 SAWNVKELDLSGNP-LSQISAAD---LAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNNY-VQELL------ 96 (317)
T ss_dssp TGGGCSEEECTTSC-CCCCCHHH---HTTCTTCCEEECTTSC-CEEEEE---ETTCTTCCEEECCSSE-EEEEE------
T ss_pred cCCCCCEEECcCCc-cCcCCHHH---hhCCCcCCEEECCCCc-CCcchh---hhhcCCCCEEECcCCc-ccccc------
Confidence 37899999999864 44333222 1578999999999985 555443 6689999999999874 44332
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
..++|+.|+++++. ++.++. ..+++|++|+++++ .++.+.+..+. .++ +|++|++ .++.
T Consensus 97 --------~~~~L~~L~l~~n~-l~~~~~-----~~~~~L~~L~l~~N-~l~~~~~~~~~-~l~---~L~~L~L-s~N~- 155 (317)
T 3o53_A 97 --------VGPSIETLHAANNN-ISRVSC-----SRGQGKKNIYLANN-KITMLRDLDEG-CRS---RVQYLDL-KLNE- 155 (317)
T ss_dssp --------ECTTCCEEECCSSC-CSEEEE-----CCCSSCEEEECCSS-CCCSGGGBCTG-GGS---SEEEEEC-TTSC-
T ss_pred --------CCCCcCEEECCCCc-cCCcCc-----cccCCCCEEECCCC-CCCCccchhhh-ccC---CCCEEEC-CCCC-
Confidence 12699999999864 555543 34789999999986 56665443333 345 8999999 8775
Q ss_pred cceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEe
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNV 286 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l 286 (326)
+..+.... . ...+++|++|++.++. ++.++... .+++|++|+++++ .++.+|..+..+++|++|++
T Consensus 156 l~~~~~~~------~---~~~l~~L~~L~L~~N~-l~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 156 IDTVNFAE------L---AASSDTLEHLNLQYNF-IYDVKGQV---VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISL 221 (317)
T ss_dssp CCEEEGGG------G---GGGTTTCCEEECTTSC-CCEEECCC---CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEEC
T ss_pred CCcccHHH------H---hhccCcCCEEECCCCc-Cccccccc---ccccCCEEECCCC-cCCcchhhhcccCcccEEEC
Confidence 43332221 0 1245899999999965 66665433 5789999999776 56667777778899999999
Q ss_pred ccccCCCCccccccCchHHHHHHHHHhhh
Q 020456 287 TEEEKDDDDEGCWEGNLNDTIKQLFNEIV 315 (326)
Q Consensus 287 ~~c~~~~~~~~~~~~~~~~~l~~l~i~~~ 315 (326)
++|.-. .++.....+.+|+.+.+++.
T Consensus 222 ~~N~l~---~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 222 RNNKLV---LIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp TTSCCC---EECTTCCCCTTCCEEECTTC
T ss_pred cCCccc---chhhHhhcCCCCCEEEccCC
Confidence 998322 23333333445555555543
No 54
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.27 E-value=5.5e-11 Score=113.88 Aligned_cols=37 Identities=5% Similarity=0.094 Sum_probs=24.2
Q ss_pred cCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 253 EFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 253 ~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
.+++|++|+++++ .++.+|..+..+++|++|++++|.
T Consensus 385 ~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 385 TLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp GCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC
Confidence 5667777777665 455566665566677777776663
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.27 E-value=7.2e-11 Score=105.06 Aligned_cols=35 Identities=31% Similarity=0.538 Sum_probs=16.0
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
.+++|++|++++| .++.+.+ +..+++|++|+++++
T Consensus 61 ~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 61 YLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGN 95 (308)
T ss_dssp GCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSC
T ss_pred ccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCC
Confidence 3455555555554 2333322 344555555555544
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.26 E-value=2.1e-10 Score=100.14 Aligned_cols=203 Identities=17% Similarity=0.183 Sum_probs=133.5
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++|++|+++++. +..+.... ...+++|++|++++| .++.+.+.. +..+++|++|+++++. +..+...
T Consensus 27 ~~~l~~L~ls~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~----- 94 (276)
T 2z62_A 27 PFSTKNLDLSFNP-LRHLGSYS---FFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGNP-IQSLALG----- 94 (276)
T ss_dssp CTTCCEEECTTCC-CCEECTTT---TTTCTTCSEEECTTC-CCCEECTTT-TTTCTTCCEEECTTCC-CCEECTT-----
T ss_pred CCCccEEECCCCc-ccccCHhH---hccccCCcEEECCCC-cCCccCHHH-ccCCcCCCEEECCCCc-cCccChh-----
Confidence 3579999998764 44443322 256789999999998 466665532 6789999999999865 3333210
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccC-cchhhhccCCCCCCceEEecccCcc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFV-SNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~-~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
....+++|+.|++.++. +..+... .+..+++|++|+++++ .++... +.. ...++ +|++|++ .++.
T Consensus 95 ----~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~---~L~~L~L-s~N~- 160 (276)
T 2z62_A 95 ----AFSGLSSLQKLVAVETN-LASLENF--PIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLT---NLEHLDL-SSNK- 160 (276)
T ss_dssp ----TTTTCTTCCEEECTTSC-CCCSTTC--CCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCT---TCCEEEC-CSSC-
T ss_pred ----hhcCCccccEEECCCCC-ccccCch--hcccCCCCCEEECcCC-ccceecCchh-hccCC---CCCEEEC-CCCC-
Confidence 11235799999998764 4443321 3567899999999886 455532 333 33455 8999999 7775
Q ss_pred cceeccccccccCccccceeeecccc----eeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC-CCCCCCc
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMN----YLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VLDTPML 281 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L 281 (326)
++.+.... ...+++|+ +|++.+. .++.++.... ...+|++|+++++. ++.+|.. +..+++|
T Consensus 161 l~~~~~~~----------~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~--~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 161 IQSIYCTD----------LRVLHQMPLLNLSLDLSLN-PMNFIQPGAF--KEIRLKELALDTNQ-LKSVPDGIFDRLTSL 226 (276)
T ss_dssp CCEECGGG----------GHHHHTCTTCCEEEECCSS-CCCEECTTSS--CSCCEEEEECCSSC-CSCCCTTTTTTCCSC
T ss_pred CCcCCHHH----------hhhhhhccccceeeecCCC-cccccCcccc--CCCcccEEECCCCc-eeecCHhHhcccccc
Confidence 44432221 22345555 6778774 4666665444 45589999998775 7777764 4578999
Q ss_pred cEEEecccc
Q 020456 282 NKVNVTEEE 290 (326)
Q Consensus 282 ~~L~l~~c~ 290 (326)
++|++++++
T Consensus 227 ~~L~l~~N~ 235 (276)
T 2z62_A 227 QKIWLHTNP 235 (276)
T ss_dssp CEEECCSSC
T ss_pred cEEEccCCc
Confidence 999999764
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.26 E-value=3.4e-11 Score=115.39 Aligned_cols=249 Identities=16% Similarity=0.159 Sum_probs=130.6
Q ss_pred CCcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCC--CCCCCCccEEEE
Q 020456 7 GIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALP--VSFFNNLEELEV 84 (326)
Q Consensus 7 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~--~~~~~~L~~L~l 84 (326)
....+++|+.+.+.++...+...+.... .+.+..+++|+.|.+.++..-.. .....++ ...+++|++|++
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~-------~~~~~~l~~L~~L~l~~~~i~~~-~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSE-------SDVVSELGKVETVTIRRLHIPQF-YLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCT-------TTCCCCCTTCCEEEEESCBCSCG-GGSCCCCHHHHHSTTCCEEEE
T ss_pred Hhhhhccccccccccccccccccccccc-------hhhhhhhcccccccccccccchh-hhcccchhhhhhcccceEEEe
Confidence 3457788999998854433333332110 11234477888888776542111 0000000 022467888888
Q ss_pred ecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccc
Q 020456 85 DDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEML 164 (326)
Q Consensus 85 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~ 164 (326)
.++. +..+ |..+.+++++|++|+++++.....++.... ....+++|+.|+++++. ++.++..+..+..++
T Consensus 318 ~~n~-l~~i-p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 318 ENSK-VFLV-PCSFSQHLKSLEFLDLSENLMVEEYLKNSA-------CKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLK 387 (549)
T ss_dssp ESSC-CCCC-CHHHHHHCTTCCEEECCSSCCCHHHHHHHT-------CTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCT
T ss_pred ccCc-cccC-CHHHHhcCccccEEEccCCccccccccchh-------hhhccccCcEEEccCCc-ccccccchhhhhcCC
Confidence 8774 5444 334446788888888877653322211000 01134566666666652 443331111244566
Q ss_pred cccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccc-----------cccccCccccceeeecccce
Q 020456 165 MLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPL-----------FDEKVGEEVKGCIVFERMNY 233 (326)
Q Consensus 165 ~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~-----------~~~~~~~~~~~~~~l~~L~~ 233 (326)
+|++|++++| .++.++ ..+ ..+. +|++|++ .++. ++.+... .+...+. ...+++|++
T Consensus 388 ~L~~L~Ls~N-~l~~lp-~~~-~~~~---~L~~L~L-s~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~----~~~l~~L~~ 455 (549)
T 2z81_A 388 NLTSLDISRN-TFHPMP-DSC-QWPE---KMRFLNL-SSTG-IRVVKTCIPQTLEVLDVSNNNLDSF----SLFLPRLQE 455 (549)
T ss_dssp TCCEEECTTC-CCCCCC-SCC-CCCT---TCCEEEC-TTSC-CSCCCTTSCTTCSEEECCSSCCSCC----CCCCTTCCE
T ss_pred CCCEEECCCC-CCccCC-hhh-cccc---cccEEEC-CCCC-cccccchhcCCceEEECCCCChhhh----cccCChhcE
Confidence 6666666665 344432 111 1222 5555655 5543 2211100 0000000 124678888
Q ss_pred eecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEecccc
Q 020456 234 LTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 234 L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 290 (326)
|++.++ .++.++.. . .+++|++|+++++ .++.++. .+..+++|++|++++|+
T Consensus 456 L~Ls~N-~l~~ip~~-~--~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 456 LYISRN-KLKTLPDA-S--LFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp EECCSS-CCSSCCCG-G--GCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EECCCC-ccCcCCCc-c--cCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 888886 56666652 2 6788999999876 4555554 45678899999998884
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.25 E-value=7.5e-10 Score=111.70 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=43.1
Q ss_pred cccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCc
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCD 114 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 114 (326)
+..+++|++|+++++.....++... ....+++|++|++++|. ++...+...++++++|++|+++++.
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDG--YFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTC--CCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred ccCCcccCEeeCcCCCCCcccccCc--cccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc
Confidence 3446777777777664433222221 12567889999998885 4455443347789999999988864
No 59
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.25 E-value=2.3e-10 Score=107.59 Aligned_cols=201 Identities=14% Similarity=0.196 Sum_probs=107.2
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|++.++.. ..+.. ...+++|++|++++|. ++...+ +..+++|++|++++|. +..+.....+.
T Consensus 88 ~l~~L~~L~l~~n~l-~~~~~-----~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~l~ 156 (466)
T 1o6v_A 88 NLTKLVDILMNNNQI-ADITP-----LANLTNLTGLTLFNNQ-ITDIDP---LKNLTNLNRLELSSNT-ISDISALSGLT 156 (466)
T ss_dssp TCTTCCEEECCSSCC-CCCGG-----GTTCTTCCEEECCSSC-CCCCGG---GTTCTTCSEEEEEEEE-ECCCGGGTTCT
T ss_pred ccccCCEEECCCCcc-ccChh-----hcCCCCCCEEECCCCC-CCCChH---HcCCCCCCEEECCCCc-cCCChhhccCC
Confidence 366666776665432 22121 2456777777777763 444432 5567777777776653 22221111000
Q ss_pred c--------c--cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCc
Q 020456 127 A--------D--KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQ 196 (326)
Q Consensus 127 ~--------~--~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~ 196 (326)
. . .......+++|+.|+++++. ++.++ .+..+++|++|++++|. +....+ ...++ +|+
T Consensus 157 ~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~---~L~ 224 (466)
T 1o6v_A 157 SLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS----VLAKLTNLESLIATNNQ-ISDITP---LGILT---NLD 224 (466)
T ss_dssp TCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG----GGGGCTTCSEEECCSSC-CCCCGG---GGGCT---TCC
T ss_pred cccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh----hhccCCCCCEEEecCCc-cccccc---ccccC---CCC
Confidence 0 0 00001123456666665543 33332 34456666677666653 333322 12233 677
Q ss_pred eEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCC
Q 020456 197 KLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVL 276 (326)
Q Consensus 197 ~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~ 276 (326)
+|++ .+|. ++.+. ....+++|++|++.++. ++.++. ...+++|++|.++++. +..++. +.
T Consensus 225 ~L~l-~~n~-l~~~~------------~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~-~~ 284 (466)
T 1o6v_A 225 ELSL-NGNQ-LKDIG------------TLASLTNLTDLDLANNQ-ISNLAP---LSGLTKLTELKLGANQ-ISNISP-LA 284 (466)
T ss_dssp EEEC-CSSC-CCCCG------------GGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CCCCGG-GT
T ss_pred EEEC-CCCC-cccch------------hhhcCCCCCEEECCCCc-cccchh---hhcCCCCCEEECCCCc-cCcccc-cc
Confidence 7777 6654 22221 12346788888888864 333332 1267889999997764 444444 55
Q ss_pred CCCCccEEEecccc
Q 020456 277 DTPMLNKVNVTEEE 290 (326)
Q Consensus 277 ~~~~L~~L~l~~c~ 290 (326)
.+++|++|++++|.
T Consensus 285 ~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 285 GLTALTNLELNENQ 298 (466)
T ss_dssp TCTTCSEEECCSSC
T ss_pred CCCccCeEEcCCCc
Confidence 68899999998874
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.23 E-value=2.4e-11 Score=115.10 Aligned_cols=215 Identities=15% Similarity=0.115 Sum_probs=146.7
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|+++++. +..+++.. ...+++|++|++++|. ++..++ +..+++|++|++++|. +..++.
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~----- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAAD---LAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNNY-VQELLV----- 97 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGG---GTTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSSE-EEEEEE-----
T ss_pred cCCCccEEEeeCCc-CCCCCHHH---HhCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCCc-CCCCCC-----
Confidence 46799999999865 44443322 2578999999999985 555544 6689999999999874 444421
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
.++|+.|+++++. +..++. ..+++|+.|++++| .+....+..+. .++ +|+.|++ .++.
T Consensus 98 ---------~~~L~~L~L~~N~-l~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~~~~-~l~---~L~~L~L-s~N~- 155 (487)
T 3oja_A 98 ---------GPSIETLHAANNN-ISRVSC-----SRGQGKKNIYLANN-KITMLRDLDEG-CRS---RVQYLDL-KLNE- 155 (487)
T ss_dssp ---------CTTCCEEECCSSC-CCCEEE-----CCCSSCEEEECCSS-CCCSGGGBCGG-GGS---SEEEEEC-TTSC-
T ss_pred ---------CCCcCEEECcCCc-CCCCCc-----cccCCCCEEECCCC-CCCCCCchhhc-CCC---CCCEEEC-CCCC-
Confidence 2699999999874 544443 34789999999987 46665444433 355 8999999 7765
Q ss_pred cceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEe
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNV 286 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l 286 (326)
++.+.+.. . ...+++|++|++.++. ++.++... .+++|++|+++++ .++.+|..+..+++|++|++
T Consensus 156 l~~~~~~~------l---~~~l~~L~~L~Ls~N~-l~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 156 IDTVNFAE------L---AASSDTLEHLNLQYNF-IYDVKGQV---VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISL 221 (487)
T ss_dssp CCEEEGGG------G---GGGTTTCCEEECTTSC-CCEEECCC---CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEEC
T ss_pred CCCcChHH------H---hhhCCcccEEecCCCc-cccccccc---cCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEe
Confidence 43332221 0 1146899999999965 66665433 5889999999776 56667777778899999999
Q ss_pred ccccCCCCccccccCchHHHHHHHHHhh
Q 020456 287 TEEEKDDDDEGCWEGNLNDTIKQLFNEI 314 (326)
Q Consensus 287 ~~c~~~~~~~~~~~~~~~~~l~~l~i~~ 314 (326)
++|.-. .++.....+++|+.+.+++
T Consensus 222 s~N~l~---~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 222 RNNKLV---LIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp TTSCCC---EECTTCCCCTTCCEEECTT
T ss_pred cCCcCc---ccchhhccCCCCCEEEcCC
Confidence 998422 2333333334444444444
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.22 E-value=9.4e-10 Score=103.17 Aligned_cols=80 Identities=15% Similarity=0.075 Sum_probs=37.8
Q ss_pred ccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCccccccCchH-----
Q 020456 230 RMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLN----- 304 (326)
Q Consensus 230 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~----- 304 (326)
+|++|++.++ .++.++. .+++|++|+++++ .++.+|. .+++|++|+++++.-.....++.....+
T Consensus 318 ~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~ 387 (454)
T 1jl5_A 318 SLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSH 387 (454)
T ss_dssp TCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-
T ss_pred cCCEEECCCC-ccccccc-----cCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccc
Confidence 5666666653 3444332 3578888888776 5666776 3788999999887433211222222222
Q ss_pred --------HHHHHHHHhhhhhhh
Q 020456 305 --------DTIKQLFNEIVSINE 319 (326)
Q Consensus 305 --------~~l~~l~i~~~~~~~ 319 (326)
.+|+.+.+++..+.+
T Consensus 388 ~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 388 LAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp -----------------------
T ss_pred ccccccccCcCCEEECCCCcCCc
Confidence 678888777765543
No 62
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.22 E-value=9.1e-11 Score=115.40 Aligned_cols=89 Identities=10% Similarity=0.049 Sum_probs=55.4
Q ss_pred eecccceeecccCCCcceecCCCccccCCcccEEEeccCCc--cccccCCCCCCCCccEEEeccccCCCCccccccCchH
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPK--MKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLN 304 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~--l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 304 (326)
.+++|++|++.++. ++.++..... .+++|++|.+.++.- +...|..+..+++|++|++++|.-. ...+..+..+
T Consensus 428 ~l~~L~~L~Ls~n~-l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~l 503 (680)
T 1ziw_A 428 GLENIFEIYLSYNK-YLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA--NINDDMLEGL 503 (680)
T ss_dssp TCTTCCEEECCSCS-EEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC--CCCTTTTTTC
T ss_pred CcccccEEecCCCC-cceeChhhhh-cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC--cCChhhhccc
Confidence 45677777777765 3444333322 678888888877652 3456777778899999999887422 1122223345
Q ss_pred HHHHHHHHhhhhhhh
Q 020456 305 DTIKQLFNEIVSINE 319 (326)
Q Consensus 305 ~~l~~l~i~~~~~~~ 319 (326)
.+|+.+.+++..+.+
T Consensus 504 ~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 504 EKLEILDLQHNNLAR 518 (680)
T ss_dssp TTCCEEECCSSCCGG
T ss_pred cccCEEeCCCCCccc
Confidence 667777776655444
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.21 E-value=1.5e-09 Score=104.49 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=29.2
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
+++|++|+++++. +..++. ..+++|++|+++++. ++.+.....++++++|++|+++++
T Consensus 99 l~~L~~L~Ls~N~-l~~lp~------~~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 99 NQDLEYLDVSHNR-LQNISC------CPMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp CTTCCEEECTTSC-CCEECS------CCCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS
T ss_pred CCCCCEEECCCCc-CCccCc------cccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCC
Confidence 5666666666543 233221 245666666666653 434332122555666666666554
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.21 E-value=6.9e-10 Score=96.66 Aligned_cols=199 Identities=16% Similarity=0.143 Sum_probs=124.8
Q ss_pred CccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccccc
Q 020456 50 DIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADK 129 (326)
Q Consensus 50 ~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 129 (326)
+.+++++.+. .+..++. ...++|++|+++++. ++.+++. .+..+++|++|+++++. +..++.
T Consensus 17 ~~~~l~~~~~-~l~~ip~------~~~~~l~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~i~~-------- 78 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPS------NIPADTKKLDLQSNK-LSSLPSK-AFHRLTKLRLLYLNDNK-LQTLPA-------- 78 (270)
T ss_dssp TTTEEECTTS-CCSSCCS------CCCTTCSEEECCSSC-CSCCCTT-SSSSCTTCCEEECCSSC-CSCCCT--------
T ss_pred CCCEEEccCC-CCCccCC------CCCCCCCEEECcCCC-CCeeCHH-HhcCCCCCCEEECCCCc-cCeeCh--------
Confidence 4667776643 3444332 233678888888874 5555543 25678888888888754 333311
Q ss_pred CcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccce
Q 020456 130 EHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQ 209 (326)
Q Consensus 130 ~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~ 209 (326)
.....+++|+.|+++++. ++.++.. .+..+++|++|+++++ .++.+.+. ....++ +|++|++ .++. ++.
T Consensus 79 -~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~---~L~~L~L-s~n~-l~~ 147 (270)
T 2o6q_A 79 -GIFKELKNLETLWVTDNK-LQALPIG--VFDQLVNLAELRLDRN-QLKSLPPR-VFDSLT---KLTYLSL-GYNE-LQS 147 (270)
T ss_dssp -TTTSSCTTCCEEECCSSC-CCCCCTT--TTTTCSSCCEEECCSS-CCCCCCTT-TTTTCT---TCCEEEC-CSSC-CCC
T ss_pred -hhhcCCCCCCEEECCCCc-CCcCCHh--HcccccCCCEEECCCC-ccCeeCHH-HhCcCc---CCCEEEC-CCCc-CCc
Confidence 111234688888888754 5554431 3466788899988875 45555332 223445 8899998 7764 433
Q ss_pred eccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC-CCCCCCccEEEecc
Q 020456 210 VQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTE 288 (326)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~ 288 (326)
+.... ...+++|++|++.++ .++.++..... .+++|++|+++++ .++.+|.. +..+++|++|++++
T Consensus 148 ~~~~~----------~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 148 LPKGV----------FDKLTSLKELRLYNN-QLKRVPEGAFD-KLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CCTTT----------TTTCTTCCEEECCSS-CCSCCCTTTTT-TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCHhH----------ccCCcccceeEecCC-cCcEeChhHhc-cCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecC
Confidence 32210 234578888988885 45556554332 6789999999876 56666663 55688999999988
Q ss_pred cc
Q 020456 289 EE 290 (326)
Q Consensus 289 c~ 290 (326)
++
T Consensus 215 N~ 216 (270)
T 2o6q_A 215 NP 216 (270)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.19 E-value=3.5e-10 Score=100.72 Aligned_cols=205 Identities=18% Similarity=0.177 Sum_probs=128.8
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhC-----CCCCEEEEccCcCcceecc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCL-----NNLRCLEVRNCDSIEEVLH 121 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~l~~c~~l~~l~~ 121 (326)
.+++|++|+++++.-...++... + ...+++|++|+++++. ++.. +. .+..+ ++|++|+++++. +..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~-~-~~~l~~L~~L~Ls~N~-l~~~-~~-~~~~l~~~~~~~L~~L~L~~N~-l~~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPL-L-EATGPDLNILNLRNVS-WATR-DA-WLAELQQWLKPGLKVLSIAQAH-SLNFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCS-S-SCCSCCCSEEEEESCB-CSSS-SS-HHHHHHTTCCTTCCEEEEESCS-CCCCCT
T ss_pred CcCCccEEEccCCcccchhHHHH-H-HhcCCCccEEEccCCC-Ccch-hH-HHHHHHHhhcCCCcEEEeeCCC-CccchH
Confidence 37889999998766433333221 1 1567899999999874 5565 33 25555 889999998875 332211
Q ss_pred ccccccccCcCCCCCCCccEEecCCCcccccc--ccccccccccccccEEeEecCCCCCccC--cchhhhccCCCCCCce
Q 020456 122 LEELNADKEHISPLFPKLSELRLIDLPKLKRF--CNFTENIIEMLMLWSLTIENCPNMETFV--SNSVVHVTTDNKKPQK 197 (326)
Q Consensus 122 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~--~~~~~~~~~~~~L~~L~l~~C~~l~~~~--~~~~~~~~~~~~~L~~ 197 (326)
. ....+++|+.|+++++.-...+ +... .+..+++|++|+++++ .++.+. +..+...++ +|++
T Consensus 167 ~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~---~L~~ 232 (312)
T 1wwl_A 167 E---------QVRVFPALSTLDLSDNPELGERGLISAL-CPLKFPTLQVLALRNA-GMETPSGVCSALAAARV---QLQG 232 (312)
T ss_dssp T---------TCCCCSSCCEEECCSCTTCHHHHHHHHS-CTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTC---CCSE
T ss_pred H---------HhccCCCCCEEECCCCCcCcchHHHHHH-HhccCCCCCEEECCCC-cCcchHHHHHHHHhcCC---CCCE
Confidence 0 1113568999999887643321 1100 1256789999999887 455331 123333445 8999
Q ss_pred EEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCC
Q 020456 198 LTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLD 277 (326)
Q Consensus 198 L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~ 277 (326)
|++ .++. ++...+. .....+++|++|++.++. ++.++... . ++|++|+++++ .++.+|. +..
T Consensus 233 L~L-s~N~-l~~~~~~---------~~~~~l~~L~~L~Ls~N~-l~~ip~~~---~-~~L~~L~Ls~N-~l~~~p~-~~~ 294 (312)
T 1wwl_A 233 LDL-SHNS-LRDAAGA---------PSCDWPSQLNSLNLSFTG-LKQVPKGL---P-AKLSVLDLSYN-RLDRNPS-PDE 294 (312)
T ss_dssp EEC-TTSC-CCSSCCC---------SCCCCCTTCCEEECTTSC-CSSCCSSC---C-SEEEEEECCSS-CCCSCCC-TTT
T ss_pred EEC-CCCc-CCcccch---------hhhhhcCCCCEEECCCCc-cChhhhhc---c-CCceEEECCCC-CCCCChh-Hhh
Confidence 998 7765 3322111 002235789999999864 56666533 2 78999999775 5666766 667
Q ss_pred CCCccEEEeccc
Q 020456 278 TPMLNKVNVTEE 289 (326)
Q Consensus 278 ~~~L~~L~l~~c 289 (326)
+++|++|+++++
T Consensus 295 l~~L~~L~L~~N 306 (312)
T 1wwl_A 295 LPQVGNLSLKGN 306 (312)
T ss_dssp SCEEEEEECTTC
T ss_pred CCCCCEEeccCC
Confidence 899999999876
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.18 E-value=1.3e-09 Score=107.26 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=41.5
Q ss_pred eeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC---------CCCCCCCccEEEecccc
Q 020456 226 IVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ---------GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 226 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~---------~~~~~~~L~~L~l~~c~ 290 (326)
..+++|+.|++.++ .++.++..... .+++|++|+++++. ++.++. .+..+++|++|+++++.
T Consensus 477 ~~l~~L~~L~Ls~N-~l~~i~~~~~~-~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 477 QPLRNLTILDLSNN-NIANINDDMLE-GLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEECCCC-CCCcCChhhhc-cccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 34678888888875 45555544332 67889999987764 433321 14567899999998873
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.17 E-value=1.9e-10 Score=100.35 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=16.6
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
.+++|++|+++++. ++.+ +. +..+++|++|++++|
T Consensus 61 ~l~~L~~L~l~~n~-l~~~-~~--l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 61 YLPNVRYLALGGNK-LHDI-SA--LKELTNLTYLILTGN 95 (272)
T ss_dssp GCTTCCEEECTTSC-CCCC-GG--GTTCTTCCEEECTTS
T ss_pred cCCCCcEEECCCCC-CCCc-hh--hcCCCCCCEEECCCC
Confidence 34555555555543 3332 11 444555555555554
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.17 E-value=4.5e-10 Score=97.99 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=126.2
Q ss_pred CCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccc
Q 020456 74 SFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRF 153 (326)
Q Consensus 74 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 153 (326)
..+++|++|.+.++. ++... . ++.+++|++|+++++. +..+. . ...+++|+.|+++++ .++.+
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~~-~--l~~l~~L~~L~l~~n~-l~~~~---~--------l~~l~~L~~L~L~~n-~l~~~ 100 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSVQ-G--IQYLPNVRYLALGGNK-LHDIS---A--------LKELTNLTYLILTGN-QLQSL 100 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCCT-T--GGGCTTCCEEECTTSC-CCCCG---G--------GTTCTTCCEEECTTS-CCCCC
T ss_pred ccccceeeeeeCCCC-ccccc-c--cccCCCCcEEECCCCC-CCCch---h--------hcCCCCCCEEECCCC-ccCcc
Confidence 457899999999985 55443 2 6789999999999875 33321 1 124579999999987 45555
Q ss_pred ccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccce
Q 020456 154 CNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNY 233 (326)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 233 (326)
+.. .+..+++|++|++++| .++.+.+ .....++ +|++|++ .+|. ++.+.+.. ...+++|++
T Consensus 101 ~~~--~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~---~L~~L~L-~~n~-l~~~~~~~----------~~~l~~L~~ 161 (272)
T 3rfs_A 101 PNG--VFDKLTNLKELVLVEN-QLQSLPD-GVFDKLT---NLTYLNL-AHNQ-LQSLPKGV----------FDKLTNLTE 161 (272)
T ss_dssp CTT--TTTTCTTCCEEECTTS-CCCCCCT-TTTTTCT---TCCEEEC-CSSC-CCCCCTTT----------TTTCTTCCE
T ss_pred Chh--HhcCCcCCCEEECCCC-cCCccCH-HHhccCC---CCCEEEC-CCCc-cCccCHHH----------hccCccCCE
Confidence 431 3577899999999987 4666533 3333455 9999999 8874 44443221 235689999
Q ss_pred eecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEecccc
Q 020456 234 LTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 234 L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 290 (326)
|++.++ .++.++..... .+++|++|+++++. ++.++. .+..+++|++|++++++
T Consensus 162 L~l~~n-~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 162 LDLSYN-QLQSLPEGVFD-KLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EECCSS-CCCCCCTTTTT-TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCC-CcCccCHHHhc-CCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence 999997 46666654322 68999999998875 555554 45679999999999884
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.17 E-value=3.5e-10 Score=107.69 Aligned_cols=133 Identities=18% Similarity=0.154 Sum_probs=84.1
Q ss_pred CCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCc-cCcchhhhccCCCCCCceEEecccCcccceeccc
Q 020456 135 LFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMET-FVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPL 213 (326)
Q Consensus 135 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~-~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~ 213 (326)
.+++|+.|+++++. ++.++.....+..+++|+.|+++++. +.. + +......++ +|++|++ .+|.-...++..
T Consensus 346 ~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l-~~~~~~~l~---~L~~L~L-s~N~l~~~~~~~ 418 (520)
T 2z7x_B 346 HLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS-VSYDE-KKGDCSWTK---SLLSLNM-SSNILTDTIFRC 418 (520)
T ss_dssp CCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC-CBCCG-GGCSCCCCT---TCCEEEC-CSSCCCGGGGGS
T ss_pred cCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc-CCccc-ccchhccCc---cCCEEEC-cCCCCCcchhhh
Confidence 34677777777654 33222111135567778888887763 333 3 222222334 7888887 766533222111
Q ss_pred cccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC-CCCCCCccEEEeccccC
Q 020456 214 FDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEEEK 291 (326)
Q Consensus 214 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~ 291 (326)
. .++|+.|++.++ .++.++.... .+++|++|+++++ .++.+|.. +..+++|++|++++++-
T Consensus 419 -----------l--~~~L~~L~Ls~N-~l~~ip~~~~--~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 419 -----------L--PPRIKVLDLHSN-KIKSIPKQVV--KLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp -----------C--CTTCCEEECCSS-CCCCCCGGGG--GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -----------h--cccCCEEECCCC-cccccchhhh--cCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 1 168999999986 5667766444 7899999999887 56678875 66789999999988743
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.17 E-value=1.2e-11 Score=119.51 Aligned_cols=217 Identities=15% Similarity=0.181 Sum_probs=135.9
Q ss_pred cCCCccEEEcccCCCcccccc------cCC-----CCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcC
Q 020456 47 GFCDIEYLQLSDFPCLKEIWH------GQA-----LPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDS 115 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~------~~~-----l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 115 (326)
.+++|++|.+.+++.+..+.. ... .....+++|++|++++|. +++..+..+.+.+++|++|++.+|..
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 489999999999886653211 000 001357899999999995 65555555455799999999999975
Q ss_pred cceeccccccccccCcCCCCCCCccEEecCCCcccccccc--ccccccccccccEEeEecCC-CCCccCcchhhhccCCC
Q 020456 116 IEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCN--FTENIIEMLMLWSLTIENCP-NMETFVSNSVVHVTTDN 192 (326)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~--~~~~~~~~~~L~~L~l~~C~-~l~~~~~~~~~~~~~~~ 192 (326)
+... +... +...+++|++|++++|. +..... .......+++|++|++++|. .+.......+...++
T Consensus 143 ~~~~----~l~~----~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~-- 211 (594)
T 2p1m_B 143 FSTD----GLAA----IAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP-- 211 (594)
T ss_dssp EEHH----HHHH----HHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCT--
T ss_pred CCHH----HHHH----HHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCC--
Confidence 5421 0000 11135799999999987 332110 00022367899999999986 222211223333456
Q ss_pred CCCceEEecccCcccceeccccccccCccccceeeecccceee-------------------cccCCCcceec-CCC---
Q 020456 193 KKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLT-------------------LDCLPSLTSFC-LGN--- 249 (326)
Q Consensus 193 ~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~-------------------l~~c~~l~~~~-~~~--- 249 (326)
+|++|++ .+|..++.+... ...+++|++|. +.+|++++.+. ...
T Consensus 212 -~L~~L~L-~~~~~~~~l~~~-----------~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~ 278 (594)
T 2p1m_B 212 -NLKSLKL-NRAVPLEKLATL-----------LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278 (594)
T ss_dssp -TCCEEEC-CTTSCHHHHHHH-----------HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG
T ss_pred -CCcEEec-CCCCcHHHHHHH-----------HhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch
Confidence 9999999 998655543221 23456677775 34556555541 100
Q ss_pred --c---cccCCcccEEEeccCCcccc--ccCCCCCCCCccEEEeccc
Q 020456 250 --Y---ALEFPSLEQVVVRQCPKMKI--FSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 250 --~---~~~~~~L~~L~i~~c~~l~~--l~~~~~~~~~L~~L~l~~c 289 (326)
. ...+++|++|++++|. +.. +...+..+++|++|++.+|
T Consensus 279 ~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 279 AYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp GGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 0 1147899999999988 553 2223446899999999988
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.17 E-value=1.1e-11 Score=119.74 Aligned_cols=138 Identities=10% Similarity=0.037 Sum_probs=81.5
Q ss_pred CCCccEEecCC---Ccccccccccc---ccccccccccEEeEecCCC-CCccCcchhhhccCCCCCCceEEecccCcccc
Q 020456 136 FPKLSELRLID---LPKLKRFCNFT---ENIIEMLMLWSLTIENCPN-METFVSNSVVHVTTDNKKPQKLTLEENFLLAD 208 (326)
Q Consensus 136 ~~~L~~L~l~~---c~~L~~~~~~~---~~~~~~~~L~~L~l~~C~~-l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~ 208 (326)
+++|+.|++.+ |..++..+... ..+..+++|++|++++|.+ +.+.....+...++ +|++|++ .+|.--.
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~---~L~~L~L-~~n~l~~ 477 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP---NVRWMLL-GYVGESD 477 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT---TCCEEEE-CSCCSSH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc---cceEeec-cCCCCCH
Confidence 45788888763 45555432100 0244578888888887764 34433334444555 8899998 7776221
Q ss_pred eeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCcccccc--CCCCCCCCccEEEe
Q 020456 209 QVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFS--QGVLDTPMLNKVNV 286 (326)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~--~~~~~~~~L~~L~l 286 (326)
.... .....+++|++|++.+|+ ++..........+++|++|++++|. ++... .-...+|.++...+
T Consensus 478 ~~~~----------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 478 EGLM----------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp HHHH----------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEE
T ss_pred HHHH----------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEe
Confidence 1110 012356899999999998 5432111111268999999999998 54321 12225677776666
Q ss_pred ccc
Q 020456 287 TEE 289 (326)
Q Consensus 287 ~~c 289 (326)
...
T Consensus 546 ~~~ 548 (592)
T 3ogk_B 546 PSR 548 (592)
T ss_dssp CCC
T ss_pred cCc
Confidence 543
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.17 E-value=4.2e-10 Score=100.09 Aligned_cols=191 Identities=13% Similarity=0.146 Sum_probs=132.1
Q ss_pred cCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCC
Q 020456 9 VSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCT 88 (326)
Q Consensus 9 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~ 88 (326)
..+++|++|.+.+.+... +. .+..+++|++|+++++. +..+.. . ..+++|++|++++|.
T Consensus 38 ~~l~~L~~L~l~~~~i~~---l~------------~~~~l~~L~~L~L~~n~-i~~~~~-~----~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT---IE------------GVQYLNNLIGLELKDNQ-ITDLAP-L----KNLTKITELELSGNP 96 (308)
T ss_dssp HHHHTCCEEECTTSCCCC---CT------------TGGGCTTCCEEECCSSC-CCCCGG-G----TTCCSCCEEECCSCC
T ss_pred HHcCCcCEEEeeCCCccC---ch------------hhhccCCCCEEEccCCc-CCCChh-H----ccCCCCCEEEccCCc
Confidence 357889999998443322 21 13358999999999774 444332 2 678999999999985
Q ss_pred CCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccE
Q 020456 89 NMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWS 168 (326)
Q Consensus 89 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~ 168 (326)
++.+ +. +..+++|++|++++|. +..+.. ...+++|+.|+++++. ++.++ .+..+++|+.
T Consensus 97 -l~~~-~~--~~~l~~L~~L~l~~n~-l~~~~~-----------l~~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~ 155 (308)
T 1h6u_A 97 -LKNV-SA--IAGLQSIKTLDLTSTQ-ITDVTP-----------LAGLSNLQVLYLDLNQ-ITNIS----PLAGLTNLQY 155 (308)
T ss_dssp -CSCC-GG--GTTCTTCCEEECTTSC-CCCCGG-----------GTTCTTCCEEECCSSC-CCCCG----GGGGCTTCCE
T ss_pred -CCCc-hh--hcCCCCCCEEECCCCC-CCCchh-----------hcCCCCCCEEECCCCc-cCcCc----cccCCCCccE
Confidence 6554 32 7789999999999975 443321 1245799999999874 55544 2567899999
Q ss_pred EeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCC
Q 020456 169 LTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLG 248 (326)
Q Consensus 169 L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 248 (326)
|++++| .+..+.+ ...++ +|+.|++ .++. ++.+.+ ...+++|++|++.++. ++.++.
T Consensus 156 L~l~~n-~l~~~~~---l~~l~---~L~~L~l-~~n~-l~~~~~------------l~~l~~L~~L~L~~N~-l~~~~~- 212 (308)
T 1h6u_A 156 LSIGNA-QVSDLTP---LANLS---KLTTLKA-DDNK-ISDISP------------LASLPNLIEVHLKNNQ-ISDVSP- 212 (308)
T ss_dssp EECCSS-CCCCCGG---GTTCT---TCCEEEC-CSSC-CCCCGG------------GGGCTTCCEEECTTSC-CCBCGG-
T ss_pred EEccCC-cCCCChh---hcCCC---CCCEEEC-CCCc-cCcChh------------hcCCCCCCEEEccCCc-cCcccc-
Confidence 999987 5666533 33455 8999999 7765 333321 2356889999999864 455543
Q ss_pred CccccCCcccEEEeccCC
Q 020456 249 NYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 249 ~~~~~~~~L~~L~i~~c~ 266 (326)
. ..+++|++|++++++
T Consensus 213 l--~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 213 L--ANTSNLFIVTLTNQT 228 (308)
T ss_dssp G--TTCTTCCEEEEEEEE
T ss_pred c--cCCCCCCEEEccCCe
Confidence 1 278899999998765
No 73
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.17 E-value=5e-11 Score=107.99 Aligned_cols=207 Identities=13% Similarity=0.058 Sum_probs=137.5
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++|++|+++++. +..++... ...+++|++|+++++ +++.+.+.. +..+++|++|+++++. +..++..
T Consensus 51 ~~~L~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~----- 118 (353)
T 2z80_A 51 TEAVKSLDLSNNR-ITYISNSD---LQRCVNLQALVLTSN-GINTIEEDS-FSSLGSLEHLDLSYNY-LSNLSSS----- 118 (353)
T ss_dssp CTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC-CSSCCHH-----
T ss_pred cccCcEEECCCCc-CcccCHHH---hccCCCCCEEECCCC-ccCccCHhh-cCCCCCCCEEECCCCc-CCcCCHh-----
Confidence 4689999999765 45544422 256899999999998 466665543 6789999999999864 3333211
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
....+++|+.|+++++ .++.++... .+..+++|++|++++|..+..+.+..+. .++ +|++|++ .++. +
T Consensus 119 ----~~~~l~~L~~L~L~~n-~l~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~---~L~~L~l-~~n~-l 186 (353)
T 2z80_A 119 ----WFKPLSSLTFLNLLGN-PYKTLGETS-LFSHLTKLQILRVGNMDTFTKIQRKDFA-GLT---FLEELEI-DASD-L 186 (353)
T ss_dssp ----HHTTCTTCSEEECTTC-CCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTT-TCC---EEEEEEE-EETT-C
T ss_pred ----HhCCCccCCEEECCCC-CCcccCchh-hhccCCCCcEEECCCCccccccCHHHcc-CCC---CCCEEEC-CCCC-c
Confidence 0113579999999986 455555311 4667899999999998777776444333 445 8999999 8776 3
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccc------------------
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMK------------------ 269 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~------------------ 269 (326)
..+.+.. ...+++|++|++.++. ++.++.... ..+++|++|+++++.--.
T Consensus 187 ~~~~~~~----------l~~l~~L~~L~l~~n~-l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l 254 (353)
T 2z80_A 187 QSYEPKS----------LKSIQNVSHLILHMKQ-HILLLEIFV-DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254 (353)
T ss_dssp CEECTTT----------TTTCSEEEEEEEECSC-STTHHHHHH-HHTTTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred CccCHHH----------HhccccCCeecCCCCc-cccchhhhh-hhcccccEEECCCCccccccccccccccccchhhcc
Confidence 3332221 3356889999998865 444443221 147788888887764211
Q ss_pred -------------cccCCCCCCCCccEEEecccc
Q 020456 270 -------------IFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 270 -------------~l~~~~~~~~~L~~L~l~~c~ 290 (326)
.+|..+..+++|++|++++|.
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 122333467899999999883
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.16 E-value=1.1e-09 Score=95.43 Aligned_cols=202 Identities=17% Similarity=0.215 Sum_probs=132.2
Q ss_pred CCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCC
Q 020456 12 PKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMS 91 (326)
Q Consensus 12 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 91 (326)
++|++|++.+.. +..+... .+..+++|++|+++++. +..+.... ...+++|++|+++++. ++
T Consensus 28 ~~l~~L~ls~n~---l~~~~~~----------~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~L~~n~-l~ 89 (276)
T 2z62_A 28 FSTKNLDLSFNP---LRHLGSY----------SFFSFPELQVLDLSRCE-IQTIEDGA---YQSLSHLSTLILTGNP-IQ 89 (276)
T ss_dssp TTCCEEECTTCC---CCEECTT----------TTTTCTTCSEEECTTCC-CCEECTTT---TTTCTTCCEEECTTCC-CC
T ss_pred CCccEEECCCCc---ccccCHh----------HhccccCCcEEECCCCc-CCccCHHH---ccCCcCCCEEECCCCc-cC
Confidence 469999998332 2222211 13458999999999874 45444322 2568999999999985 66
Q ss_pred cCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccc--cccccccccccccccEE
Q 020456 92 SAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKR--FCNFTENIIEMLMLWSL 169 (326)
Q Consensus 92 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--~~~~~~~~~~~~~L~~L 169 (326)
...+.. +..+++|++|+++++. +..+... ....+++|+.|+++++. ++. ++. .+..+++|++|
T Consensus 90 ~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~~l~~---~~~~l~~L~~L 154 (276)
T 2z62_A 90 SLALGA-FSGLSSLQKLVAVETN-LASLENF---------PIGHLKTLKELNVAHNL-IQSFKLPE---YFSNLTNLEHL 154 (276)
T ss_dssp EECTTT-TTTCTTCCEEECTTSC-CCCSTTC---------CCTTCTTCCEEECCSSC-CCCCCCCG---GGGGCTTCCEE
T ss_pred ccChhh-hcCCccccEEECCCCC-ccccCch---------hcccCCCCCEEECcCCc-cceecCch---hhccCCCCCEE
Confidence 655433 6789999999999874 3322110 11245799999999864 443 343 67788999999
Q ss_pred eEecCCCCCccCcchhhhccCCCCCCc----eEEecccCcccceeccccccccCccccceeeecccceeecccCCCccee
Q 020456 170 TIENCPNMETFVSNSVVHVTTDNKKPQ----KLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSF 245 (326)
Q Consensus 170 ~l~~C~~l~~~~~~~~~~~~~~~~~L~----~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 245 (326)
+++++ .++.+.+..+. .+. +|+ +|++ .++. ++.+... .....+|++|++.++. ++.+
T Consensus 155 ~Ls~N-~l~~~~~~~~~-~l~---~L~~l~l~L~l-s~n~-l~~~~~~-----------~~~~~~L~~L~L~~n~-l~~~ 215 (276)
T 2z62_A 155 DLSSN-KIQSIYCTDLR-VLH---QMPLLNLSLDL-SLNP-MNFIQPG-----------AFKEIRLKELALDTNQ-LKSV 215 (276)
T ss_dssp ECCSS-CCCEECGGGGH-HHH---TCTTCCEEEEC-CSSC-CCEECTT-----------SSCSCCEEEEECCSSC-CSCC
T ss_pred ECCCC-CCCcCCHHHhh-hhh---hccccceeeec-CCCc-ccccCcc-----------ccCCCcccEEECCCCc-eeec
Confidence 99987 56666443333 233 565 6777 6554 4444322 1223479999999965 7777
Q ss_pred cCCCccccCCcccEEEeccCC
Q 020456 246 CLGNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 246 ~~~~~~~~~~~L~~L~i~~c~ 266 (326)
+..... .+++|++|++++.+
T Consensus 216 ~~~~~~-~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 216 PDGIFD-RLTSLQKIWLHTNP 235 (276)
T ss_dssp CTTTTT-TCCSCCEEECCSSC
T ss_pred CHhHhc-ccccccEEEccCCc
Confidence 665432 68999999998543
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.16 E-value=6.9e-10 Score=100.43 Aligned_cols=208 Identities=15% Similarity=0.118 Sum_probs=144.0
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.+++++|++++. .++.++.+. ...+++|++|+++++.....+. ...+.++++|+++.+.++..+..+.+.
T Consensus 29 ~~~l~~L~Ls~N-~i~~i~~~~---f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~l~~~----- 98 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVIQKGA---FSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINPE----- 98 (350)
T ss_dssp CTTCSEEEEESC-CCSEECTTS---STTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCEECTT-----
T ss_pred CCCCCEEEccCC-cCCCcCHHH---HcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccccCch-----
Confidence 468999999864 466666543 1568899999999986544443 333567888888777777777766321
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
....+++|+.|+++++. ++.++.. ......++..|.+.++.++..+....+..... .++.|++ .++ .+
T Consensus 99 ----~f~~l~~L~~L~l~~n~-l~~~~~~--~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~---~l~~L~L-~~N-~i 166 (350)
T 4ay9_X 99 ----AFQNLPNLQYLLISNTG-IKHLPDV--HKIHSLQKVLLDIQDNINIHTIERNSFVGLSF---ESVILWL-NKN-GI 166 (350)
T ss_dssp ----SBCCCTTCCEEEEEEEC-CSSCCCC--TTCCBSSCEEEEEESCTTCCEECTTSSTTSBS---SCEEEEC-CSS-CC
T ss_pred ----hhhhccccccccccccc-cccCCch--hhcccchhhhhhhccccccccccccchhhcch---hhhhhcc-ccc-cc
Confidence 11235689999998753 5555432 23345667888888888888875544443333 6888888 554 46
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEec
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVT 287 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~ 287 (326)
+.+... .....+|++|.+.++..++.++..... .+++|++|++++. .++.+|.+. +..|++|.+.
T Consensus 167 ~~i~~~-----------~f~~~~L~~l~l~~~n~l~~i~~~~f~-~l~~L~~LdLs~N-~l~~lp~~~--~~~L~~L~~l 231 (350)
T 4ay9_X 167 QEIHNS-----------AFNGTQLDELNLSDNNNLEELPNDVFH-GASGPVILDISRT-RIHSLPSYG--LENLKKLRAR 231 (350)
T ss_dssp CEECTT-----------SSTTEEEEEEECTTCTTCCCCCTTTTT-TEECCSEEECTTS-CCCCCCSSS--CTTCCEEECT
T ss_pred cCCChh-----------hccccchhHHhhccCCcccCCCHHHhc-cCcccchhhcCCC-CcCccChhh--hccchHhhhc
Confidence 655433 222367899999999999999876543 7889999999876 688898765 6788888887
Q ss_pred cccCC
Q 020456 288 EEEKD 292 (326)
Q Consensus 288 ~c~~~ 292 (326)
++...
T Consensus 232 ~~~~l 236 (350)
T 4ay9_X 232 STYNL 236 (350)
T ss_dssp TCTTC
T ss_pred cCCCc
Confidence 77544
No 76
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.14 E-value=1.5e-09 Score=101.80 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=30.4
Q ss_pred ceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC--------CCCCCCccEEEeccc
Q 020456 232 NYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG--------VLDTPMLNKVNVTEE 289 (326)
Q Consensus 232 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~--------~~~~~~L~~L~l~~c 289 (326)
+.|++.+++.+..++. ..+++|++|++++|..++.+|.. +..+++|++|+++++
T Consensus 267 ~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 267 LEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp SCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred CEEECCCCccCCcccc----cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 3444444444444442 14577888888777766555431 234566777777665
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.12 E-value=8.5e-10 Score=106.17 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=38.3
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC-CCCCCCccEEEecccc
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEEE 290 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~ 290 (326)
++|++|++.++ .++.++.... .+++|++|+++++ .++.+|.. +..+++|+++++++++
T Consensus 450 ~~L~~L~L~~N-~l~~ip~~~~--~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIPKDVT--HLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTCSEEECCSS-CCCCCCTTTT--SSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CcCCEEECCCC-cCcccChhhc--CCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 46777777765 5666665444 6677777777664 45566665 5567777777777763
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.12 E-value=2.8e-09 Score=92.75 Aligned_cols=181 Identities=19% Similarity=0.180 Sum_probs=122.1
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++|++|++.++. +..+.... ...+++|++|+++++. ++.+++. .+..+++|++|+++++. +..++.
T Consensus 36 ~~~l~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n~-l~~i~~~-~~~~l~~L~~L~l~~n~-l~~~~~------ 102 (270)
T 2o6q_A 36 PADTKKLDLQSNK-LSSLPSKA---FHRLTKLRLLYLNDNK-LQTLPAG-IFKELKNLETLWVTDNK-LQALPI------ 102 (270)
T ss_dssp CTTCSEEECCSSC-CSCCCTTS---SSSCTTCCEEECCSSC-CSCCCTT-TTSSCTTCCEEECCSSC-CCCCCT------
T ss_pred CCCCCEEECcCCC-CCeeCHHH---hcCCCCCCEEECCCCc-cCeeChh-hhcCCCCCCEEECCCCc-CCcCCH------
Confidence 4679999998765 44443322 2568999999999984 6555543 35779999999999864 333321
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
.....+++|+.|+++++. ++.++.. .+..+++|++|+++++ .++.+++ .....++ +|++|++ .++. +
T Consensus 103 ---~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~---~L~~L~L-~~n~-l 169 (270)
T 2o6q_A 103 ---GVFDQLVNLAELRLDRNQ-LKSLPPR--VFDSLTKLTYLSLGYN-ELQSLPK-GVFDKLT---SLKELRL-YNNQ-L 169 (270)
T ss_dssp ---TTTTTCSSCCEEECCSSC-CCCCCTT--TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCT---TCCEEEC-CSSC-C
T ss_pred ---hHcccccCCCEEECCCCc-cCeeCHH--HhCcCcCCCEEECCCC-cCCccCH-hHccCCc---ccceeEe-cCCc-C
Confidence 111245799999998854 5554431 3567899999999987 5666633 3333455 8999999 7774 4
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCC
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 266 (326)
+.+.+.. ...+++|++|++.++ .++.++..... .+++|+.|.+.+.+
T Consensus 170 ~~~~~~~----------~~~l~~L~~L~L~~N-~l~~~~~~~~~-~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 170 KRVPEGA----------FDKLTELKTLKLDNN-QLKRVPEGAFD-SLEKLKMLQLQENP 216 (270)
T ss_dssp SCCCTTT----------TTTCTTCCEEECCSS-CCSCCCTTTTT-TCTTCCEEECCSSC
T ss_pred cEeChhH----------hccCCCcCEEECCCC-cCCcCCHHHhc-cccCCCEEEecCCC
Confidence 4332221 234688999999986 56777664432 68899999998755
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.10 E-value=1.7e-09 Score=102.94 Aligned_cols=132 Identities=11% Similarity=0.120 Sum_probs=83.7
Q ss_pred CCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCc-chhhhccCCCCCCceEEecccCcccceeccc
Q 020456 135 LFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVS-NSVVHVTTDNKKPQKLTLEENFLLADQVQPL 213 (326)
Q Consensus 135 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~-~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~ 213 (326)
.+++|+.|+++++.--..++. .+..+++|+.|++++| .++.+.. ......++ +|++|++ .++.-...+...
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~---~L~~L~L-s~N~l~~~l~~~ 393 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFE---NCGHLTELETLILQMN-QLKELSKIAEMTTQMK---SLQQLDI-SQNSVSYDEKKG 393 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTT---TCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCT---TCCEEEC-CSSCCBCCGGGC
T ss_pred hCCcccEEEeECCccChhhhh---hhccCCCCCEEEccCC-ccCccccchHHHhhCC---CCCEEEC-CCCcCCcccccc
Confidence 456777777776643322333 4566778888888776 3443211 11222344 7888888 766533223211
Q ss_pred cccccCccccceeeecccceeecccCCCcceecCCCccccC-CcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 214 FDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEF-PSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 214 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
....+++|++|++.++.--..++. .+ ++|++|+++++ .++.+|..+..+++|++|++++|.
T Consensus 394 ----------~~~~l~~L~~L~Ls~N~l~~~~~~-----~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 394 ----------DCSWTKSLLSLNMSSNILTDTIFR-----CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp ----------SCCCCTTCCEEECCSSCCCGGGGG-----SCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ----------hhccCccCCEEECcCCCCCcchhh-----hhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc
Confidence 123457899999998764333332 22 69999999877 566788877789999999999984
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.09 E-value=4.8e-12 Score=116.13 Aligned_cols=260 Identities=11% Similarity=0.054 Sum_probs=146.9
Q ss_pred cccCCcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCC--ccc-ccccCC-C--CCCCCC
Q 020456 4 FSQGIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPC--LKE-IWHGQA-L--PVSFFN 77 (326)
Q Consensus 4 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--l~~-~~~~~~-l--~~~~~~ 77 (326)
+...+..+++|++|++.++... .. ....+...+..+++|++|+++++.. +.. ++.+.. + ....++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~------~~---~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIG------TE---AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEEC------HH---HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred HHHHHhcCCCccEEECCCCCCC------HH---HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 3444557889999999832111 11 0111112244589999999998732 221 111100 0 013579
Q ss_pred CccEEEEecCCCCCcCC---chhHHhhCCCCCEEEEccCcCcceecc-cc-ccccc-cCcCCCCCCCccEEecCCCccc-
Q 020456 78 NLEELEVDDCTNMSSAI---PANLLRCLNNLRCLEVRNCDSIEEVLH-LE-ELNAD-KEHISPLFPKLSELRLIDLPKL- 150 (326)
Q Consensus 78 ~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~-~~~~~-~~~~~~~~~~L~~L~l~~c~~L- 150 (326)
+|++|++++|. ++... ....+..+++|++|++++|..-..... .. .+... ........++|+.|+++++.--
T Consensus 95 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 95 KLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred cccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 99999999985 54421 112367899999999999863210000 00 00000 0000000169999999987522
Q ss_pred cccccccccccccccccEEeEecCCCCCccCcch----hhhccCCCCCCceEEecccCccc----ceeccccccccCccc
Q 020456 151 KRFCNFTENIIEMLMLWSLTIENCPNMETFVSNS----VVHVTTDNKKPQKLTLEENFLLA----DQVQPLFDEKVGEEV 222 (326)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~----~~~~~~~~~~L~~L~i~~~c~~l----~~~~~~~~~~~~~~~ 222 (326)
..++.....+..+++|++|++++| .+....... ....++ +|++|++ .+|.-- ..+..
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~---~L~~L~L-s~n~l~~~g~~~l~~---------- 238 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQ---ELKVLDL-QDNTFTHLGSSALAI---------- 238 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCT---TCCEEEC-CSSCCHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCC---CccEEEC-cCCCCCcHHHHHHHH----------
Confidence 122211114556789999999998 454321111 222444 8999999 887632 11111
Q ss_pred cceeeecccceeecccCCCccee-----cCCCccccCCcccEEEeccCCccc----cccCCC-CCCCCccEEEecccc
Q 020456 223 KGCIVFERMNYLTLDCLPSLTSF-----CLGNYALEFPSLEQVVVRQCPKMK----IFSQGV-LDTPMLNKVNVTEEE 290 (326)
Q Consensus 223 ~~~~~l~~L~~L~l~~c~~l~~~-----~~~~~~~~~~~L~~L~i~~c~~l~----~l~~~~-~~~~~L~~L~l~~c~ 290 (326)
....+++|++|++.+|. ++.. +.......+++|++|.+++|.--. .+|..+ ..+++|++|++++|.
T Consensus 239 -~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 239 -ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp -HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred -HHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 13456899999999986 3322 111100137899999998876333 377655 357999999999984
No 81
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.09 E-value=2.1e-09 Score=100.83 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=42.6
Q ss_pred eecccceeecccCCCcceecCCCc------cccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNY------ALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~------~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
.+++|+.|++.+++.+..++.... -..+++|++|+++++ .++.++ +..+++|++|+++++.
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 468999999999998877764211 124567777777554 344443 5578999999998873
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.05 E-value=1.3e-08 Score=95.29 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=32.1
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccc--cccCCCCCC-------------CCccEEEeccccCC
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMK--IFSQGVLDT-------------PMLNKVNVTEEEKD 292 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~--~l~~~~~~~-------------~~L~~L~l~~c~~~ 292 (326)
+++|++|++.++ .++.++. .+++|++|+++++.-.. .+|..+..+ ++|++|+++++.-.
T Consensus 336 ~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 336 PPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred CCcCCEEECCCC-ccccccc-----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 478999999986 5666664 46799999998775443 466655544 78999999887422
Q ss_pred CCccccccCchHHHHHHHHHhh
Q 020456 293 DDDEGCWEGNLNDTIKQLFNEI 314 (326)
Q Consensus 293 ~~~~~~~~~~~~~~l~~l~i~~ 314 (326)
.... .+.+++.+.+.+
T Consensus 410 ~~~~------iP~sl~~L~~~~ 425 (454)
T 1jl5_A 410 EFPD------IPESVEDLRMNS 425 (454)
T ss_dssp ----------------------
T ss_pred cccc------chhhHhheeCcC
Confidence 1111 234666665544
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.05 E-value=4.2e-09 Score=102.31 Aligned_cols=73 Identities=12% Similarity=-0.043 Sum_probs=48.5
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCccccccCchHHHHH
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLNDTIK 308 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~l~ 308 (326)
++|++|++.++ .++.++ ..+++|++|+++++ .++.+|. .+++|++|++++|.-. .++..+..+++|+
T Consensus 221 ~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L~---~lp~~l~~l~~L~ 287 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQLT---RLPESLIHLSSET 287 (622)
T ss_dssp TTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCC---SCCGGGGGSCTTC
T ss_pred CCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCCC---cCCHHHhhccccC
Confidence 67888888875 566655 15689999999876 6777877 4789999999988322 2333333344444
Q ss_pred HHHHhh
Q 020456 309 QLFNEI 314 (326)
Q Consensus 309 ~l~i~~ 314 (326)
.+.+++
T Consensus 288 ~L~L~~ 293 (622)
T 3g06_A 288 TVNLEG 293 (622)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 444443
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.05 E-value=3.5e-09 Score=93.25 Aligned_cols=201 Identities=17% Similarity=0.152 Sum_probs=131.3
Q ss_pred CcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecC
Q 020456 8 IVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDC 87 (326)
Q Consensus 8 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c 87 (326)
+.++++++++.+.+.+ +..+-.. ..++++.|+++++.. ..+.... ...+++|++|+++++
T Consensus 6 ~~~l~~l~~l~~~~~~---l~~ip~~-------------~~~~l~~L~L~~N~l-~~~~~~~---~~~l~~L~~L~L~~n 65 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN---LTALPPD-------------LPKDTTILHLSENLL-YTFSLAT---LMPYTRLTQLNLDRA 65 (290)
T ss_dssp EECSTTCCEEECTTSC---CSSCCSC-------------CCTTCCEEECTTSCC-SEEEGGG---GTTCTTCCEEECTTS
T ss_pred ccccCCccEEECCCCC---CCcCCCC-------------CCCCCCEEEcCCCcC-CccCHHH---hhcCCCCCEEECCCC
Confidence 4578889999888322 2222111 147899999987654 3333222 256789999999987
Q ss_pred CCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccccccccccccccc
Q 020456 88 TNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLW 167 (326)
Q Consensus 88 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~ 167 (326)
. ++.+.+. ..+++|++|+++++. +..++. ....+++|+.|++++. +++.++.. .+..+++|+
T Consensus 66 ~-l~~~~~~---~~l~~L~~L~Ls~N~-l~~l~~----------~~~~l~~L~~L~l~~N-~l~~l~~~--~~~~l~~L~ 127 (290)
T 1p9a_G 66 E-LTKLQVD---GTLPVLGTLDLSHNQ-LQSLPL----------LGQTLPALTVLDVSFN-RLTSLPLG--ALRGLGELQ 127 (290)
T ss_dssp C-CCEEECC---SCCTTCCEEECCSSC-CSSCCC----------CTTTCTTCCEEECCSS-CCCCCCSS--TTTTCTTCC
T ss_pred c-cCcccCC---CCCCcCCEEECCCCc-CCcCch----------hhccCCCCCEEECCCC-cCcccCHH--HHcCCCCCC
Confidence 4 6555442 578999999999864 433321 1124578999999885 46655532 466788999
Q ss_pred EEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecC
Q 020456 168 SLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCL 247 (326)
Q Consensus 168 ~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 247 (326)
.|+++++ .++.++ ......++ +|+.|++ .++. ++.+.... ...+++|++|++.+. .++.++.
T Consensus 128 ~L~L~~N-~l~~~~-~~~~~~l~---~L~~L~L-~~N~-l~~l~~~~----------~~~l~~L~~L~L~~N-~l~~ip~ 189 (290)
T 1p9a_G 128 ELYLKGN-ELKTLP-PGLLTPTP---KLEKLSL-ANNN-LTELPAGL----------LNGLENLDTLLLQEN-SLYTIPK 189 (290)
T ss_dssp EEECTTS-CCCCCC-TTTTTTCT---TCCEEEC-TTSC-CSCCCTTT----------TTTCTTCCEEECCSS-CCCCCCT
T ss_pred EEECCCC-CCCccC-hhhccccc---CCCEEEC-CCCc-CCccCHHH----------hcCcCCCCEEECCCC-cCCccCh
Confidence 9999886 566663 33333455 8999998 7664 44443221 234688999999884 5677776
Q ss_pred CCccccCCcccEEEeccCC
Q 020456 248 GNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 248 ~~~~~~~~~L~~L~i~~c~ 266 (326)
... ..++|+.+.+.+.+
T Consensus 190 ~~~--~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 190 GFF--GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTT--TTCCCSEEECCSCC
T ss_pred hhc--ccccCCeEEeCCCC
Confidence 554 56789999888543
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.99 E-value=6.1e-09 Score=92.50 Aligned_cols=208 Identities=16% Similarity=0.154 Sum_probs=117.6
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCch---hHHhhCCCCCEEEEccCcCcceeccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPA---NLLRCLNNLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 124 (326)
+++|++|+++++.-....+... . ...+++|++|+++++. ++...+. ..+..+++|++|+++++.- ..++.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~-~-~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~--- 162 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLP-L-EATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSC--- 162 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCS-S-SCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCT---
T ss_pred cCceeEEEeeCCEeccchhhhh-h-hccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhH---
Confidence 4568888887765433322111 0 0456788888888875 4332221 1123578888888887653 22211
Q ss_pred cccccCcCCCCCCCccEEecCCCccccc--cccccccccccccccEEeEecCCCCCccCcc--hhhhccCCCCCCceEEe
Q 020456 125 LNADKEHISPLFPKLSELRLIDLPKLKR--FCNFTENIIEMLMLWSLTIENCPNMETFVSN--SVVHVTTDNKKPQKLTL 200 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~--~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~--~~~~~~~~~~~L~~L~i 200 (326)
.....+++|+.|+++++.-... ++... .+..+++|++|++++| +++.+... .+...+. +|++|++
T Consensus 163 ------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~---~L~~L~L 231 (310)
T 4glp_A 163 ------EQVRAFPALTSLDLSDNPGLGERGLMAAL-CPHKFPAIQNLALRNT-GMETPTGVCAALAAAGV---QPHSLDL 231 (310)
T ss_dssp ------TSCCCCTTCCEEECCSCTTCHHHHHHTTS-CTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTC---CCSSEEC
T ss_pred ------HHhccCCCCCEEECCCCCCccchhhhHHH-hhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCC---CCCEEEC
Confidence 0111356888888888753321 21110 2346788888888886 45543211 1223445 8888888
Q ss_pred cccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCC
Q 020456 201 EENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPM 280 (326)
Q Consensus 201 ~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~ 280 (326)
.++. +..+.+.. . .....+++|++|++.++ .++.++... .++|++|+++++ .++.+|. ...+++
T Consensus 232 -s~N~-l~~~~p~~------~-~~~~~~~~L~~L~Ls~N-~l~~lp~~~----~~~L~~L~Ls~N-~l~~~~~-~~~l~~ 295 (310)
T 4glp_A 232 -SHNS-LRATVNPS------A-PRCMWSSALNSLNLSFA-GLEQVPKGL----PAKLRVLDLSSN-RLNRAPQ-PDELPE 295 (310)
T ss_dssp -TTSC-CCCCCCSC------C-SSCCCCTTCCCEECCSS-CCCSCCSCC----CSCCSCEECCSC-CCCSCCC-TTSCCC
T ss_pred -CCCC-CCccchhh------H-HhccCcCcCCEEECCCC-CCCchhhhh----cCCCCEEECCCC-cCCCCch-hhhCCC
Confidence 7665 33321110 0 00112268888888875 455665432 368888888665 4555554 345788
Q ss_pred ccEEEeccc
Q 020456 281 LNKVNVTEE 289 (326)
Q Consensus 281 L~~L~l~~c 289 (326)
|++|+++++
T Consensus 296 L~~L~L~~N 304 (310)
T 4glp_A 296 VDNLTLDGN 304 (310)
T ss_dssp CSCEECSST
T ss_pred ccEEECcCC
Confidence 888888776
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.99 E-value=1.9e-09 Score=89.35 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=76.2
Q ss_pred CCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccc
Q 020456 74 SFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRF 153 (326)
Q Consensus 74 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 153 (326)
..+++|++|+++++. +++++ . +..+++|++|++++| .++.+
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~--l~~l~~L~~L~l~~n-~~~~~---------------------------------- 81 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-G--IEYAHNIKDLTINNI-HATNY---------------------------------- 81 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-T--GGGCTTCSEEEEESC-CCSCC----------------------------------
T ss_pred hhcCCccEEeccCCC-ccChH-H--HhcCCCCCEEEccCC-CCCcc----------------------------------
Confidence 346778888887763 44443 2 566777777777776 23221
Q ss_pred ccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccce
Q 020456 154 CNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNY 233 (326)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 233 (326)
+ .+..+++|++|++++| .++...+..+. .++ +|++|++ .+|.-....... ...+++|++
T Consensus 82 ~----~l~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~---~L~~L~L-s~n~i~~~~~~~-----------l~~l~~L~~ 140 (197)
T 4ezg_A 82 N----PISGLSNLERLRIMGK-DVTSDKIPNLS-GLT---SLTLLDI-SHSAHDDSILTK-----------INTLPKVNS 140 (197)
T ss_dssp G----GGTTCTTCCEEEEECT-TCBGGGSCCCT-TCT---TCCEEEC-CSSBCBGGGHHH-----------HTTCSSCCE
T ss_pred h----hhhcCCCCCEEEeECC-ccCcccChhhc-CCC---CCCEEEe-cCCccCcHhHHH-----------HhhCCCCCE
Confidence 1 1233455555555553 23221111111 223 5555555 444322111100 223455666
Q ss_pred eecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 234 LTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 234 L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
|++.+|..++.++. . ..+++|++|++++|. ++.++ .+..+++|++|+++++
T Consensus 141 L~L~~n~~i~~~~~-l--~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 141 IDLSYNGAITDIMP-L--KTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSCTBCCCCGG-G--GGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC
T ss_pred EEccCCCCccccHh-h--cCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCc
Confidence 66666554555442 1 156677777776553 44444 3445677777777665
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.96 E-value=8.1e-09 Score=85.46 Aligned_cols=129 Identities=12% Similarity=0.196 Sum_probs=79.2
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|++.++. +..++ +. ..+++|++|++++| .++... . +..+++|++|+++++.--...+.
T Consensus 42 ~l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~l~~n-~~~~~~-~--l~~l~~L~~L~l~~n~l~~~~~~----- 106 (197)
T 4ezg_A 42 QMNSLTYITLANIN-VTDLT-GI----EYAHNIKDLTINNI-HATNYN-P--ISGLSNLERLRIMGKDVTSDKIP----- 106 (197)
T ss_dssp HHHTCCEEEEESSC-CSCCT-TG----GGCTTCSEEEEESC-CCSCCG-G--GTTCTTCCEEEEECTTCBGGGSC-----
T ss_pred hcCCccEEeccCCC-ccChH-HH----hcCCCCCEEEccCC-CCCcch-h--hhcCCCCCEEEeECCccCcccCh-----
Confidence 37899999999754 34433 22 57899999999999 555442 2 67899999999998652211110
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFL 205 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~ 205 (326)
....+++|+.|+++++.--...+. .+..+++|++|++++|..++.++ . ...++ +|++|++ .+|.
T Consensus 107 -----~l~~l~~L~~L~Ls~n~i~~~~~~---~l~~l~~L~~L~L~~n~~i~~~~--~-l~~l~---~L~~L~l-~~n~ 170 (197)
T 4ezg_A 107 -----NLSGLTSLTLLDISHSAHDDSILT---KINTLPKVNSIDLSYNGAITDIM--P-LKTLP---ELKSLNI-QFDG 170 (197)
T ss_dssp -----CCTTCTTCCEEECCSSBCBGGGHH---HHTTCSSCCEEECCSCTBCCCCG--G-GGGCS---SCCEEEC-TTBC
T ss_pred -----hhcCCCCCCEEEecCCccCcHhHH---HHhhCCCCCEEEccCCCCccccH--h-hcCCC---CCCEEEC-CCCC
Confidence 011345777777777542222222 44556777777777765455542 1 22333 6666666 5543
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.94 E-value=1.7e-09 Score=96.02 Aligned_cols=189 Identities=15% Similarity=0.125 Sum_probs=120.5
Q ss_pred ccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccc
Q 020456 46 IGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEEL 125 (326)
Q Consensus 46 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 125 (326)
..+++|++|+++++.-..............+++|++|++++|. +...++.. ++.+++|++|+++++...... +.
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~----~~ 187 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQ-VRAFPALTSLDLSDNPGLGER----GL 187 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTS-CCCCTTCCEEECCSCTTCHHH----HH
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHH-hccCCCCCEEECCCCCCccch----hh
Confidence 4589999999998764332110000111357999999999985 55655433 678999999999998643211 00
Q ss_pred ccccCcCCCCCCCccEEecCCCcccccccccccc-ccccccccEEeEecCCCCCccCcchhhhc--cCCCCCCceEEecc
Q 020456 126 NADKEHISPLFPKLSELRLIDLPKLKRFCNFTEN-IIEMLMLWSLTIENCPNMETFVSNSVVHV--TTDNKKPQKLTLEE 202 (326)
Q Consensus 126 ~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~-~~~~~~L~~L~l~~C~~l~~~~~~~~~~~--~~~~~~L~~L~i~~ 202 (326)
. .......+++|++|+++++. ++.++..... +..+++|++|+++++ .+....|..+... .+ +|++|++ .
T Consensus 188 ~--~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~---~L~~L~L-s 259 (310)
T 4glp_A 188 M--AALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSS---ALNSLNL-S 259 (310)
T ss_dssp H--TTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCT---TCCCEEC-C
T ss_pred h--HHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcC---cCCEEEC-C
Confidence 0 00111246799999999874 5544431111 356799999999986 4666534333322 24 8999999 7
Q ss_pred cCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCC
Q 020456 203 NFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 266 (326)
++. ++.+... .+++|+.|++.++ .++.++.. ..+++|++|++++.+
T Consensus 260 ~N~-l~~lp~~-------------~~~~L~~L~Ls~N-~l~~~~~~---~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 260 FAG-LEQVPKG-------------LPAKLRVLDLSSN-RLNRAPQP---DELPEVDNLTLDGNP 305 (310)
T ss_dssp SSC-CCSCCSC-------------CCSCCSCEECCSC-CCCSCCCT---TSCCCCSCEECSSTT
T ss_pred CCC-CCchhhh-------------hcCCCCEEECCCC-cCCCCchh---hhCCCccEEECcCCC
Confidence 765 4444222 2379999999985 45665441 277999999997654
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.93 E-value=3.9e-09 Score=93.90 Aligned_cols=213 Identities=15% Similarity=0.115 Sum_probs=132.6
Q ss_pred CCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccC-CCCCCCCCCccEEEEecCC
Q 020456 10 STPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQ-ALPVSFFNNLEELEVDDCT 88 (326)
Q Consensus 10 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~l~~~~~~~L~~L~l~~c~ 88 (326)
++++|++|++.+.... +.....+ + ...+++|++|+++++.- ..++... .++....++|++|+++++.
T Consensus 93 ~l~~L~~L~L~~n~l~------~~~~~~~---~--~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 93 GISGLQELTLENLEVT------GTAPPPL---L--EATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAH 160 (312)
T ss_dssp TTSCCCEEEEEEEBCB------SCCCCCS---S--SCCSCCCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEEEESCS
T ss_pred CcCCccEEEccCCccc------chhHHHH---H--HhcCCCccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEEeeCCC
Confidence 5889999999943222 1100000 0 13589999999997653 3322111 0111123899999999985
Q ss_pred CCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccc-ccccccccc
Q 020456 89 NMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTE-NIIEMLMLW 167 (326)
Q Consensus 89 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~-~~~~~~~L~ 167 (326)
+....+.. ++.+++|++|+++++.....+...... ....+++|+.|+++++. ++.++.... .+..+++|+
T Consensus 161 -l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~------~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 161 -SLNFSCEQ-VRVFPALSTLDLSDNPELGERGLISAL------CPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQ 231 (312)
T ss_dssp -CCCCCTTT-CCCCSSCCEEECCSCTTCHHHHHHHHS------CTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCS
T ss_pred -CccchHHH-hccCCCCCEEECCCCCcCcchHHHHHH------HhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCC
Confidence 66666443 678999999999998643321000000 11245799999999874 553322110 224568999
Q ss_pred EEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecC
Q 020456 168 SLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCL 247 (326)
Q Consensus 168 ~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 247 (326)
.|+++++ .+....+......+. +|++|++ .++. ++.+... . +++|++|++.+. .++.++.
T Consensus 232 ~L~Ls~N-~l~~~~~~~~~~~l~---~L~~L~L-s~N~-l~~ip~~-----------~--~~~L~~L~Ls~N-~l~~~p~ 291 (312)
T 1wwl_A 232 GLDLSHN-SLRDAAGAPSCDWPS---QLNSLNL-SFTG-LKQVPKG-----------L--PAKLSVLDLSYN-RLDRNPS 291 (312)
T ss_dssp EEECTTS-CCCSSCCCSCCCCCT---TCCEEEC-TTSC-CSSCCSS-----------C--CSEEEEEECCSS-CCCSCCC
T ss_pred EEECCCC-cCCcccchhhhhhcC---CCCEEEC-CCCc-cChhhhh-----------c--cCCceEEECCCC-CCCCChh
Confidence 9999986 455543323333345 9999999 8776 4444222 1 178999999985 5676655
Q ss_pred CCccccCCcccEEEeccCC
Q 020456 248 GNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 248 ~~~~~~~~~L~~L~i~~c~ 266 (326)
.. .+++|++|++++.+
T Consensus 292 -~~--~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 292 -PD--ELPQVGNLSLKGNP 307 (312)
T ss_dssp -TT--TSCEEEEEECTTCT
T ss_pred -Hh--hCCCCCEEeccCCC
Confidence 22 78999999997653
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.93 E-value=7.9e-09 Score=91.04 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=101.6
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
+++|+.|++.++. +..+. .. ..+++|++|++++|. ++.+.+ +..+++|++|+++++. +..+..
T Consensus 45 l~~L~~L~l~~~~-i~~~~-~~----~~l~~L~~L~L~~n~-l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~------ 107 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSVQ-GI----QYLPNVTKLFLNGNK-LTDIKP---LANLKNLGWLFLDENK-VKDLSS------ 107 (291)
T ss_dssp HHTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCGGG------
T ss_pred cCcccEEEccCCC-cccCh-hH----hcCCCCCEEEccCCc-cCCCcc---cccCCCCCEEECCCCc-CCCChh------
Confidence 6778888887653 33321 12 457888888888874 555443 5678888888888764 333211
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
...+++|+.|+++++. ++.++ .+..+++|+.|++++| .++.+ .....++ +|++|++ .+|. +
T Consensus 108 -----l~~l~~L~~L~L~~n~-i~~~~----~l~~l~~L~~L~l~~n-~l~~~---~~l~~l~---~L~~L~L-~~N~-l 168 (291)
T 1h6t_A 108 -----LKDLKKLKSLSLEHNG-ISDIN----GLVHLPQLESLYLGNN-KITDI---TVLSRLT---KLDTLSL-EDNQ-I 168 (291)
T ss_dssp -----GTTCTTCCEEECTTSC-CCCCG----GGGGCTTCCEEECCSS-CCCCC---GGGGGCT---TCSEEEC-CSSC-C
T ss_pred -----hccCCCCCEEECCCCc-CCCCh----hhcCCCCCCEEEccCC-cCCcc---hhhccCC---CCCEEEc-cCCc-c
Confidence 1134678888887763 55443 4566788888888776 44444 1222344 7888888 6664 3
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCC
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 266 (326)
+.+.+ ...+++|+.|++.++ .++.++. . ..+++|+.|++++++
T Consensus 169 ~~~~~------------l~~l~~L~~L~L~~N-~i~~l~~-l--~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 169 SDIVP------------LAGLTKLQNLYLSKN-HISDLRA-L--AGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCGG------------GTTCTTCCEEECCSS-CCCBCGG-G--TTCTTCSEEEEEEEE
T ss_pred ccchh------------hcCCCccCEEECCCC-cCCCChh-h--ccCCCCCEEECcCCc
Confidence 33211 224577888888775 4555543 1 167778888776654
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.92 E-value=4.3e-10 Score=103.07 Aligned_cols=226 Identities=14% Similarity=0.102 Sum_probs=134.7
Q ss_pred hhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecC--CCCCcCCchhH------HhhCCCCCEEEEcc
Q 020456 41 CYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDC--TNMSSAIPANL------LRCLNNLRCLEVRN 112 (326)
Q Consensus 41 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c--~~l~~~~~~~~------~~~l~~L~~L~l~~ 112 (326)
+...+..+++|++|+++++.--...+....-....+++|++|++++| ..++...|..+ +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 33345568999999999875432211110000146899999999998 33333334332 36889999999998
Q ss_pred CcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccc--cccccccc---------ccccEEeEecCCCCCccC
Q 020456 113 CDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCN--FTENIIEM---------LMLWSLTIENCPNMETFV 181 (326)
Q Consensus 113 c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~--~~~~~~~~---------~~L~~L~l~~C~~l~~~~ 181 (326)
+..-..-. ..... ....+++|+.|++++|. +..... ....+..+ ++|++|++++|. +....
T Consensus 104 n~l~~~~~--~~l~~----~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~ 175 (386)
T 2ca6_A 104 NAFGPTAQ--EPLID----FLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGS 175 (386)
T ss_dssp CCCCTTTH--HHHHH----HHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGG
T ss_pred CcCCHHHH--HHHHH----HHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHH
Confidence 75321000 00000 01134799999999986 321110 00023333 899999999874 54322
Q ss_pred cch---hhhccCCCCCCceEEecccCcccce----eccccccccCccccceeeecccceeecccCCCc----ceecCCCc
Q 020456 182 SNS---VVHVTTDNKKPQKLTLEENFLLADQ----VQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSL----TSFCLGNY 250 (326)
Q Consensus 182 ~~~---~~~~~~~~~~L~~L~i~~~c~~l~~----~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l----~~~~~~~~ 250 (326)
... ....++ +|++|++ .+|.--.. +.+. ....+++|++|++.++.-- ..++....
T Consensus 176 ~~~l~~~l~~~~---~L~~L~L-~~n~l~~~g~~~l~~~----------~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 176 MKEWAKTFQSHR---LLHTVKM-VQNGIRPEGIEHLLLE----------GLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp HHHHHHHHHHCT---TCCEEEC-CSSCCCHHHHHHHHHT----------TGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCC---CcCEEEC-cCCCCCHhHHHHHHHH----------HhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 222 222455 9999999 88853211 1110 1345689999999997631 33333222
Q ss_pred cccCCcccEEEeccCCcccc----ccCCC--CCCCCccEEEecccc
Q 020456 251 ALEFPSLEQVVVRQCPKMKI----FSQGV--LDTPMLNKVNVTEEE 290 (326)
Q Consensus 251 ~~~~~~L~~L~i~~c~~l~~----l~~~~--~~~~~L~~L~l~~c~ 290 (326)
.+++|++|.+++|.--.. ++..+ ..+++|++|++++|.
T Consensus 242 --~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 242 --SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp --GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred --cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 688999999998863222 44544 238999999999983
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.92 E-value=2.4e-08 Score=85.77 Aligned_cols=128 Identities=16% Similarity=0.135 Sum_probs=65.1
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
++.+++++.+. .+..++. ...+++++|+++++. ++.+.+.. +..+++|++|+++++. +..+.+
T Consensus 14 ~~~~~l~~~~~-~l~~~p~------~~~~~l~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~------- 76 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPS------GIPADTEKLDLQSTG-LATLSDAT-FRGLTKLTWLNLDYNQ-LQTLSA------- 76 (251)
T ss_dssp GGGTEEECTTC-CCSSCCS------CCCTTCCEEECTTSC-CCCCCTTT-TTTCTTCCEEECTTSC-CCCCCT-------
T ss_pred CCCeEEecCCC-CccccCC------CCCCCCCEEEccCCC-cCccCHhH-hcCcccCCEEECCCCc-CCccCH-------
Confidence 35666766643 3344332 233678888888874 55554432 5678888888888753 332211
Q ss_pred cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
.....+++|+.|+++++. ++.++.. .+..+++|++|+++++ .++.+++ .....+. +|++|++ .++
T Consensus 77 --~~~~~l~~L~~L~L~~n~-l~~~~~~--~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~---~L~~L~L-s~N 141 (251)
T 3m19_A 77 --GVFDDLTELGTLGLANNQ-LASLPLG--VFDHLTQLDKLYLGGN-QLKSLPS-GVFDRLT---KLKELRL-NTN 141 (251)
T ss_dssp --TTTTTCTTCCEEECTTSC-CCCCCTT--TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCT---TCCEEEC-CSS
T ss_pred --hHhccCCcCCEEECCCCc-ccccChh--HhcccCCCCEEEcCCC-cCCCcCh-hHhccCC---cccEEEC-cCC
Confidence 011123466666665542 3333321 2344566666666554 4444422 2222233 5555555 443
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.90 E-value=1.5e-08 Score=89.26 Aligned_cols=145 Identities=19% Similarity=0.221 Sum_probs=76.5
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|+++++.- ..+.. ...+++|++|+++++. ++.+. . +..+++|++|++++|. +..+. ..
T Consensus 66 ~l~~L~~L~L~~n~l-~~~~~-----l~~l~~L~~L~l~~n~-l~~~~-~--l~~l~~L~~L~L~~n~-i~~~~---~l- 130 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKL-TDIKP-----LANLKNLGWLFLDENK-VKDLS-S--LKDLKKLKSLSLEHNG-ISDIN---GL- 130 (291)
T ss_dssp GCTTCCEEECCSSCC-CCCGG-----GTTCTTCCEEECCSSC-CCCGG-G--GTTCTTCCEEECTTSC-CCCCG---GG-
T ss_pred cCCCCCEEEccCCcc-CCCcc-----cccCCCCCEEECCCCc-CCCCh-h--hccCCCCCEEECCCCc-CCCCh---hh-
Confidence 466777777765432 32221 1456677777777663 44432 2 5566777777776653 32221 00
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
..+++|+.|+++++. ++.++ .+..+++|+.|++++| .+..+.+ ...++ +|++|++ .++.
T Consensus 131 -------~~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~---~L~~L~L-~~N~- 189 (291)
T 1h6t_A 131 -------VHLPQLESLYLGNNK-ITDIT----VLSRLTKLDTLSLEDN-QISDIVP---LAGLT---KLQNLYL-SKNH- 189 (291)
T ss_dssp -------GGCTTCCEEECCSSC-CCCCG----GGGGCTTCSEEECCSS-CCCCCGG---GTTCT---TCCEEEC-CSSC-
T ss_pred -------cCCCCCCEEEccCCc-CCcch----hhccCCCCCEEEccCC-ccccchh---hcCCC---ccCEEEC-CCCc-
Confidence 123567777776653 44432 4555677777777665 4444432 22333 6777776 5553
Q ss_pred cceeccccccccCccccceeeecccceeecccC
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCL 239 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 239 (326)
++.+.. ...+++|+.|++.++
T Consensus 190 i~~l~~------------l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 190 ISDLRA------------LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCBCGG------------GTTCTTCSEEEEEEE
T ss_pred CCCChh------------hccCCCCCEEECcCC
Confidence 332211 223466666666664
No 94
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.89 E-value=1.7e-10 Score=108.00 Aligned_cols=192 Identities=11% Similarity=0.122 Sum_probs=98.5
Q ss_pred CCccEEEEecCCCCCcCC---chhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccc-
Q 020456 77 NNLEELEVDDCTNMSSAI---PANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKR- 152 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~- 152 (326)
++|++|++++|. ++... ....+..+++|++|++++|. +... +...........+++|+.|++++| .++.
T Consensus 199 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~----~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~ 271 (461)
T 1z7x_W 199 CQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDV----GMAELCPGLLHPSSRLRTLWIWEC-GITAK 271 (461)
T ss_dssp CCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHH----HHHHHHHHHTSTTCCCCEEECTTS-CCCHH
T ss_pred CCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChH----HHHHHHHHHhcCCCCceEEECcCC-CCCHH
Confidence 466666666663 33321 01224456666666666653 2111 000000000112457888888777 3443
Q ss_pred ----cccccccccccccccEEeEecCCCCCccCcchhhhccCC-CCCCceEEecccCcccceeccccccccCccccceee
Q 020456 153 ----FCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTD-NKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIV 227 (326)
Q Consensus 153 ----~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~-~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~ 227 (326)
++. .+..+++|++|+++++ .+.......+...+.. .++|++|++ .+|.--.... . ........
T Consensus 272 ~~~~l~~---~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L-~~n~l~~~~~-~------~l~~~l~~ 339 (461)
T 1z7x_W 272 GCGDLCR---VLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWV-KSCSFTAACC-S------HFSSVLAQ 339 (461)
T ss_dssp HHHHHHH---HHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEEC-TTSCCBGGGH-H------HHHHHHHH
T ss_pred HHHHHHH---HHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEc-CCCCCchHHH-H------HHHHHHhh
Confidence 332 3455778888888776 3443322222221110 127888888 7776221100 0 00111234
Q ss_pred ecccceeecccCCCcceecCCCc----cccCCcccEEEeccCCccc-----cccCCCCCCCCccEEEeccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNY----ALEFPSLEQVVVRQCPKMK-----IFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~----~~~~~~L~~L~i~~c~~l~-----~l~~~~~~~~~L~~L~l~~c 289 (326)
+++|++|++.++ .++....... ....++|++|++++|. ++ .+|..+..+++|++|++++|
T Consensus 340 ~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 340 NRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp CSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred CCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCC
Confidence 578888888887 3433211110 0025688899888874 43 46666556788899998887
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.85 E-value=1.3e-08 Score=98.65 Aligned_cols=169 Identities=18% Similarity=0.236 Sum_probs=112.2
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|+.|.+.++. +..+. . ...+++|+.|++++|. +..+.+ +..+++|+.|++++|. +..+..
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~-~----l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~----- 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ-G----IQYLPNVTKLFLNGNK-LTDIKP---LTNLKNLGWLFLDENK-IKDLSS----- 104 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT-T----GGGCTTCCEEECTTSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCTT-----
T ss_pred cCCCCCEEECcCCC-CCCCh-H----HccCCCCCEEEeeCCC-CCCChh---hccCCCCCEEECcCCC-CCCChh-----
Confidence 37788888888655 33322 1 2567899999999884 656544 6689999999998874 333211
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
...+++|+.|+++++. +..++ .+..+++|+.|++++| .+..+ .....++ +|+.|++ .+|.
T Consensus 105 ------l~~l~~L~~L~Ls~N~-l~~l~----~l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~---~L~~L~L-s~N~- 164 (605)
T 1m9s_A 105 ------LKDLKKLKSLSLEHNG-ISDIN----GLVHLPQLESLYLGNN-KITDI---TVLSRLT---KLDTLSL-EDNQ- 164 (605)
T ss_dssp ------STTCTTCCEEECTTSC-CCCCG----GGGGCTTCSEEECCSS-CCCCC---GGGGSCT---TCSEEEC-CSSC-
T ss_pred ------hccCCCCCEEEecCCC-CCCCc----cccCCCccCEEECCCC-ccCCc---hhhcccC---CCCEEEC-cCCc-
Confidence 1235689999998864 54443 4667889999999887 45554 2223445 8999998 7775
Q ss_pred cceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCc
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPK 267 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~ 267 (326)
+..+.+ ...+++|+.|++.++ .+..++. . ..+++|+.|.+++++-
T Consensus 165 l~~~~~------------l~~l~~L~~L~Ls~N-~i~~l~~-l--~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 165 ISDIVP------------LAGLTKLQNLYLSKN-HISDLRA-L--AGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCCCGG------------GTTCTTCCEEECCSS-CCCBCGG-G--TTCTTCSEEECCSEEE
T ss_pred CCCchh------------hccCCCCCEEECcCC-CCCCChH-H--ccCCCCCEEEccCCcC
Confidence 333221 235688899998886 4555542 1 2678899998877653
No 96
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.85 E-value=2.4e-10 Score=106.94 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=33.8
Q ss_pred ecccceeecccCCCcce-----ecCCCccccCCcccEEEeccCCcccc-----ccCCCC-CCCCccEEEecccc
Q 020456 228 FERMNYLTLDCLPSLTS-----FCLGNYALEFPSLEQVVVRQCPKMKI-----FSQGVL-DTPMLNKVNVTEEE 290 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~L~~L~i~~c~~l~~-----l~~~~~-~~~~L~~L~l~~c~ 290 (326)
+++|++|++.+| .++. ++... ..+++|++|+++++. ++. +...+. ..++|++|++++|.
T Consensus 255 ~~~L~~L~L~~n-~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 255 SSRLRTLWIWEC-GITAKGCGDLCRVL--RAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp TCCCCEEECTTS-CCCHHHHHHHHHHH--HHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred CCCceEEECcCC-CCCHHHHHHHHHHH--hhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 466777777776 3443 22111 146788888887764 321 222221 23688888888884
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.83 E-value=6.2e-08 Score=83.20 Aligned_cols=157 Identities=16% Similarity=0.106 Sum_probs=102.9
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++|+.|++.++.- ..+.... ...+++|++|+++++ .++.+.+. .+..+++|++|+++++. +..++.
T Consensus 34 ~~~l~~L~L~~n~l-~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~------ 100 (251)
T 3m19_A 34 PADTEKLDLQSTGL-ATLSDAT---FRGLTKLTWLNLDYN-QLQTLSAG-VFDDLTELGTLGLANNQ-LASLPL------ 100 (251)
T ss_dssp CTTCCEEECTTSCC-CCCCTTT---TTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTSC-CCCCCT------
T ss_pred CCCCCEEEccCCCc-CccCHhH---hcCcccCCEEECCCC-cCCccCHh-HhccCCcCCEEECCCCc-ccccCh------
Confidence 46899999987653 3333222 256789999999998 46665553 36789999999999864 333321
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
.....+++|+.|++++. +++.++.. .+..+++|+.|+++++ +++.+++.. ...++ +|++|++ .++. +
T Consensus 101 ---~~~~~l~~L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~---~L~~L~L-~~N~-l 167 (251)
T 3m19_A 101 ---GVFDHLTQLDKLYLGGN-QLKSLPSG--VFDRLTKLKELRLNTN-QLQSIPAGA-FDKLT---NLQTLSL-STNQ-L 167 (251)
T ss_dssp ---TTTTTCTTCCEEECCSS-CCCCCCTT--TTTTCTTCCEEECCSS-CCCCCCTTT-TTTCT---TCCEEEC-CSSC-C
T ss_pred ---hHhcccCCCCEEEcCCC-cCCCcChh--HhccCCcccEEECcCC-cCCccCHHH-cCcCc---CCCEEEC-CCCc-C
Confidence 11124579999999886 56666542 3467899999999886 677664322 33445 8999999 7764 4
Q ss_pred ceeccccccccCccccceeeecccceeecccCC
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLP 240 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 240 (326)
+.+.+.. ...+++|++|++.+.+
T Consensus 168 ~~~~~~~----------~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 168 QSVPHGA----------FDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SCCCTTT----------TTTCTTCCEEECCSCC
T ss_pred CccCHHH----------HhCCCCCCEEEeeCCc
Confidence 3332211 3345788888888754
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.80 E-value=1.8e-09 Score=98.16 Aligned_cols=252 Identities=13% Similarity=0.037 Sum_probs=143.1
Q ss_pred CCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCC-CccEEEcccCCCcccccccCC-CCCCCCCCccEEEEecC
Q 020456 10 STPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFC-DIEYLQLSDFPCLKEIWHGQA-LPVSFFNNLEELEVDDC 87 (326)
Q Consensus 10 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~-l~~~~~~~L~~L~l~~c 87 (326)
..++|++|++.+.... +..... +.+.+..++ +|++|+++++.--...+.... .....+++|++|++++|
T Consensus 20 ~~~~L~~L~Ls~n~l~------~~~~~~---l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLY------SISTVE---LIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp SCTTCCEEECTTSCGG------GSCHHH---HHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred CCCCceEEEccCCCCC------hHHHHH---HHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 4456999999932221 111111 112234477 899999998753222121110 00012489999999999
Q ss_pred CCCCcCCchhH---HhhC-CCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccc-----ccccccc
Q 020456 88 TNMSSAIPANL---LRCL-NNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLK-----RFCNFTE 158 (326)
Q Consensus 88 ~~l~~~~~~~~---~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-----~~~~~~~ 158 (326)
. ++...+..+ +..+ ++|++|++++|. +...... .+. ..+.....+|++|+++++. ++ .++.
T Consensus 91 ~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~-~l~---~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~--- 160 (362)
T 3goz_A 91 F-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSS-EFK---QAFSNLPASITSLNLRGND-LGIKSSDELIQ--- 160 (362)
T ss_dssp C-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH-HHH---HHHTTSCTTCCEEECTTSC-GGGSCHHHHHH---
T ss_pred c-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHH-HHH---HHHHhCCCceeEEEccCCc-CCHHHHHHHHH---
Confidence 5 665554432 3344 899999999876 3322110 000 0000112489999999874 33 2221
Q ss_pred cccccc-cccEEeEecCCCCCccCcchhhhccCCC-CCCceEEecccCcccceeccccccccCccccceee-ecccceee
Q 020456 159 NIIEML-MLWSLTIENCPNMETFVSNSVVHVTTDN-KKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIV-FERMNYLT 235 (326)
Q Consensus 159 ~~~~~~-~L~~L~l~~C~~l~~~~~~~~~~~~~~~-~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~-l~~L~~L~ 235 (326)
.+..++ +|++|++++| .++...+..+...+... ++|++|++ .+|. +...... ........ .++|++|+
T Consensus 161 ~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L-s~N~-i~~~~~~------~l~~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDL-SANL-LGLKSYA------ELAYIFSSIPNHVVSLN 231 (362)
T ss_dssp HHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEEC-TTSC-GGGSCHH------HHHHHHHHSCTTCCEEE
T ss_pred HHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEEC-CCCC-CChhHHH------HHHHHHhcCCCCceEEE
Confidence 233454 9999999997 56665444333322122 18999999 8876 3321000 00000112 25899999
Q ss_pred cccCCCcceecCC---CccccCCcccEEEeccCC-------ccccccCCCCCCCCccEEEecccc
Q 020456 236 LDCLPSLTSFCLG---NYALEFPSLEQVVVRQCP-------KMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 236 l~~c~~l~~~~~~---~~~~~~~~L~~L~i~~c~-------~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
+.++. ++..+.. .....+++|++|++++|. .+..++..+..+++|++|+++++.
T Consensus 232 Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 232 LCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 99964 4433221 011267899999999886 244466666678899999998874
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.79 E-value=2.9e-08 Score=96.23 Aligned_cols=168 Identities=17% Similarity=0.199 Sum_probs=113.3
Q ss_pred CCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCC
Q 020456 10 STPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTN 89 (326)
Q Consensus 10 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~ 89 (326)
.+++|+.|.+.+.... .+ +.+..+++|+.|+++++. +..+.. ...+++|+.|++++|.
T Consensus 41 ~L~~L~~L~l~~n~i~---~l------------~~l~~l~~L~~L~Ls~N~-l~~~~~-----l~~l~~L~~L~Ls~N~- 98 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIK---SV------------QGIQYLPNVTKLFLNGNK-LTDIKP-----LTNLKNLGWLFLDENK- 98 (605)
T ss_dssp HHTTCCCCBCTTCCCC---CC------------TTGGGCTTCCEEECTTSC-CCCCGG-----GGGCTTCCEEECCSSC-
T ss_pred cCCCCCEEECcCCCCC---CC------------hHHccCCCCCEEEeeCCC-CCCChh-----hccCCCCCEEECcCCC-
Confidence 4667777777732222 11 124568999999998765 333222 2578999999999984
Q ss_pred CCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEE
Q 020456 90 MSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSL 169 (326)
Q Consensus 90 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L 169 (326)
+..+. . +..+++|+.|++++|. +..+.. ...+++|+.|+|+++. +..++ .+..+++|+.|
T Consensus 99 l~~l~-~--l~~l~~L~~L~Ls~N~-l~~l~~-----------l~~l~~L~~L~Ls~N~-l~~l~----~l~~l~~L~~L 158 (605)
T 1m9s_A 99 IKDLS-S--LKDLKKLKSLSLEHNG-ISDING-----------LVHLPQLESLYLGNNK-ITDIT----VLSRLTKLDTL 158 (605)
T ss_dssp CCCCT-T--STTCTTCCEEECTTSC-CCCCGG-----------GGGCTTCSEEECCSSC-CCCCG----GGGSCTTCSEE
T ss_pred CCCCh-h--hccCCCCCEEEecCCC-CCCCcc-----------ccCCCccCEEECCCCc-cCCch----hhcccCCCCEE
Confidence 65543 2 6789999999999875 333311 1135799999998874 55552 56778999999
Q ss_pred eEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCC
Q 020456 170 TIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLP 240 (326)
Q Consensus 170 ~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 240 (326)
++++| .+..+.+ ...++ +|+.|++ .+|. +..+.. +..+++|+.|++.+++
T Consensus 159 ~Ls~N-~l~~~~~---l~~l~---~L~~L~L-s~N~-i~~l~~------------l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 159 SLEDN-QISDIVP---LAGLT---KLQNLYL-SKNH-ISDLRA------------LAGLKNLDVLELFSQE 208 (605)
T ss_dssp ECCSS-CCCCCGG---GTTCT---TCCEEEC-CSSC-CCBCGG------------GTTCTTCSEEECCSEE
T ss_pred ECcCC-cCCCchh---hccCC---CCCEEEC-cCCC-CCCChH------------HccCCCCCEEEccCCc
Confidence 99987 4665533 33455 8999999 7774 443311 3356889999998865
No 100
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.74 E-value=2.6e-07 Score=89.40 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=69.0
Q ss_pred ccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccC
Q 020456 160 IIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCL 239 (326)
Q Consensus 160 ~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 239 (326)
+..+++|+.|+++++.......+. ....++ +|++|++ .+|. ++.+.+.. ...+++|+.|++.++
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~---~L~~L~L-s~N~-L~~l~~~~----------f~~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPD-IFTELR---NLTFLDL-SQCQ-LEQLSPTA----------FNSLSSLQVLNMSHN 528 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECS-CCTTCT---TCCEEEC-TTSC-CCEECTTT----------TTTCTTCCEEECTTS
T ss_pred cccchhhhhhhhhhcccccccCch-hhhhcc---ccCEEEC-CCCc-cCCcChHH----------HcCCCCCCEEECCCC
Confidence 345567777777766544443222 222344 7888888 7764 55443321 335678888888885
Q ss_pred CCcceecCCCccccCCcccEEEeccCCccccccCCCCCC-CCccEEEeccccC
Q 020456 240 PSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDT-PMLNKVNVTEEEK 291 (326)
Q Consensus 240 ~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~-~~L~~L~l~~c~~ 291 (326)
.++.++..... .+++|++|+++++.--...|..+..+ ++|++|++++++=
T Consensus 529 -~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 529 -NFFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp -CCCBCCCGGGT-TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred -cCCCCChhHHh-CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 56666543332 67888888887764333334455455 5789999887643
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.73 E-value=2e-07 Score=89.54 Aligned_cols=175 Identities=14% Similarity=0.107 Sum_probs=119.3
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
.+|+.|++.++. +..++. ..+++|++|+++++ +++.++ ..+++|++|+++++. +..++.
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~------~l~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N~-l~~ip~------- 117 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPD------NLPPQITVLEITQN-ALISLP-----ELPASLEYLDACDNR-LSTLPE------- 117 (571)
T ss_dssp TTCSEEECCSSC-CSCCCS------CCCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSCCCC-------
T ss_pred CCccEEEeCCCC-CCccCH------hHcCCCCEEECcCC-CCcccc-----cccCCCCEEEccCCC-CCCcch-------
Confidence 389999998764 454332 33588999999998 466554 247899999999874 443321
Q ss_pred cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccc
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLAD 208 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~ 208 (326)
...+|+.|+++++ .++.++. .+++|+.|+++++ .++.++. .++ +|++|++ .++. ++
T Consensus 118 ------l~~~L~~L~Ls~N-~l~~lp~------~l~~L~~L~Ls~N-~l~~lp~-----~l~---~L~~L~L-s~N~-L~ 173 (571)
T 3cvr_A 118 ------LPASLKHLDVDNN-QLTMLPE------LPALLEYINADNN-QLTMLPE-----LPT---SLEVLSV-RNNQ-LT 173 (571)
T ss_dssp ------CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCSCCCC-----CCT---TCCEEEC-CSSC-CS
T ss_pred ------hhcCCCEEECCCC-cCCCCCC------cCccccEEeCCCC-ccCcCCC-----cCC---CcCEEEC-CCCC-CC
Confidence 1128999999885 3555553 4788999999886 4665532 234 8999998 7765 33
Q ss_pred eeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcc-------cEEEeccCCccccccCCCCCCCCc
Q 020456 209 QVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSL-------EQVVVRQCPKMKIFSQGVLDTPML 281 (326)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L-------~~L~i~~c~~l~~l~~~~~~~~~L 281 (326)
.+.. .. ++|+.|++.++ .++.++. .. . +| +.|+++++ .++.+|..+..+++|
T Consensus 174 ~lp~------------l~--~~L~~L~Ls~N-~L~~lp~-~~--~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L 232 (571)
T 3cvr_A 174 FLPE------------LP--ESLEALDVSTN-LLESLPA-VP--V--RNHHSEETEIFFRCREN-RITHIPENILSLDPT 232 (571)
T ss_dssp CCCC------------CC--TTCCEEECCSS-CCSSCCC-CC------------CCEEEECCSS-CCCCCCGGGGGSCTT
T ss_pred Ccch------------hh--CCCCEEECcCC-CCCchhh-HH--H--hhhcccccceEEecCCC-cceecCHHHhcCCCC
Confidence 3321 11 78889998885 5666665 22 1 55 88988765 667788877778999
Q ss_pred cEEEeccc
Q 020456 282 NKVNVTEE 289 (326)
Q Consensus 282 ~~L~l~~c 289 (326)
++|+++++
T Consensus 233 ~~L~L~~N 240 (571)
T 3cvr_A 233 CTIILEDN 240 (571)
T ss_dssp EEEECCSS
T ss_pred CEEEeeCC
Confidence 99999887
No 102
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.73 E-value=1.1e-07 Score=92.13 Aligned_cols=59 Identities=10% Similarity=0.151 Sum_probs=28.6
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEeccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEE 289 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c 289 (326)
+++|+.|++.++ .++.++..... .+++|++|+++++ .++.++. .+..+++|++|+++++
T Consensus 493 l~~L~~L~Ls~N-~L~~l~~~~f~-~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 493 LRNLTFLDLSQC-QLEQLSPTAFN-SLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS
T ss_pred ccccCEEECCCC-ccCCcChHHHc-CCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC
Confidence 455555555554 34444332221 4555666655544 3443333 2334555666665554
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.67 E-value=5.3e-08 Score=78.19 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=32.8
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC----CCCCCCCccEEEecccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ----GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~----~~~~~~~L~~L~l~~c~ 290 (326)
+++|++|++.++ .++.++.......+++|++|++++++ +..+|. .+..+++|++|++++|.
T Consensus 94 l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 94 LPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 455666666654 34443321111156677777776653 333443 34456777777777764
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.62 E-value=1.8e-07 Score=77.83 Aligned_cols=14 Identities=14% Similarity=0.136 Sum_probs=7.2
Q ss_pred cccccccEEeEecC
Q 020456 161 IEMLMLWSLTIENC 174 (326)
Q Consensus 161 ~~~~~L~~L~l~~C 174 (326)
..+++|++|+++++
T Consensus 97 ~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 97 DKLTQLKELALNTN 110 (208)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cCccCCCEEEcCCC
Confidence 34455555555543
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.60 E-value=4.2e-07 Score=72.83 Aligned_cols=133 Identities=23% Similarity=0.201 Sum_probs=64.1
Q ss_pred CCCccEEEcccCCCc-ccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 48 FCDIEYLQLSDFPCL-KEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l-~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.++|++|++.++.-. ..++... ..+++|++|++++|. ++.+ .. +..+++|++|++++|.....++...
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~----~~l~~L~~L~l~~n~-l~~~-~~--~~~l~~L~~L~Ls~N~l~~~~~~~~--- 91 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLT----AEFVNLEFLSLINVG-LISV-SN--LPKLPKLKKLELSENRIFGGLDMLA--- 91 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCC----GGGGGCCEEEEESSC-CCCC-SS--CCCCSSCCEEEEESCCCCSCCCHHH---
T ss_pred cccCCEEECCCCCCChhhHHHHH----HhCCCCCEEeCcCCC-CCCh-hh--hccCCCCCEEECcCCcCchHHHHHH---
Confidence 455666666655422 1222111 345666666666654 4443 11 4456666666666554211111000
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCc--chhhhccCCCCCCceEEecccC
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVS--NSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~--~~~~~~~~~~~~L~~L~i~~~c 204 (326)
..+++|+.|+++++ .++.++... .+..+++|+.|+++++ .+...++ ......++ +|++|++ .+|
T Consensus 92 -------~~l~~L~~L~Ls~N-~l~~~~~~~-~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~---~L~~L~l-~~n 157 (168)
T 2ell_A 92 -------EKLPNLTHLNLSGN-KLKDISTLE-PLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLP---QLTYLDG-YDR 157 (168)
T ss_dssp -------HHCTTCCEEECBSS-SCCSSGGGG-GGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCS---SCCEETT-EET
T ss_pred -------hhCCCCCEEeccCC-ccCcchhHH-HHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCc---cCcEecC-CCC
Confidence 01346666666655 344433111 4455677777777665 3444322 12233344 6777777 666
Q ss_pred c
Q 020456 205 L 205 (326)
Q Consensus 205 ~ 205 (326)
.
T Consensus 158 ~ 158 (168)
T 2ell_A 158 E 158 (168)
T ss_dssp T
T ss_pred C
Confidence 5
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.59 E-value=2.4e-07 Score=80.23 Aligned_cols=145 Identities=21% Similarity=0.268 Sum_probs=81.1
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|++.++. +..+. .. ..+++|++|+++++ +++.+.+ +..+++|++|+++++. +..+...
T Consensus 39 ~l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N~-l~~l~~~---- 103 (263)
T 1xeu_A 39 ELSGVQNFNGDNSN-IQSLA-GM----QFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRNR-LKNLNGI---- 103 (263)
T ss_dssp HHTTCSEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSSC-CSCCTTC----
T ss_pred hcCcCcEEECcCCC-cccch-HH----hhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCCc-cCCcCcc----
Confidence 36777777777653 34322 22 45677777777776 3555443 5567777777777753 3322110
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
..++|+.|+++++ +++.++ .+..+++|+.|+++++ .++.+. . ...++ +|+.|++ .++.
T Consensus 104 --------~~~~L~~L~L~~N-~l~~~~----~l~~l~~L~~L~Ls~N-~i~~~~--~-l~~l~---~L~~L~L-~~N~- 161 (263)
T 1xeu_A 104 --------PSACLSRLFLDNN-ELRDTD----SLIHLKNLEILSIRNN-KLKSIV--M-LGFLS---KLEVLDL-HGNE- 161 (263)
T ss_dssp --------CCSSCCEEECCSS-CCSBSG----GGTTCTTCCEEECTTS-CCCBCG--G-GGGCT---TCCEEEC-TTSC-
T ss_pred --------ccCcccEEEccCC-ccCCCh----hhcCcccccEEECCCC-cCCCCh--H-HccCC---CCCEEEC-CCCc-
Confidence 0147777777765 344443 3556677777777765 355542 1 22344 7777777 6554
Q ss_pred cceeccccccccCccccceeeecccceeecccCC
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLP 240 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 240 (326)
++.+. . ...+++|+.|++.+.+
T Consensus 162 i~~~~-~-----------l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 162 ITNTG-G-----------LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCBCT-T-----------STTCCCCCEEEEEEEE
T ss_pred CcchH-H-----------hccCCCCCEEeCCCCc
Confidence 22221 0 2245667777766643
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.50 E-value=1.1e-06 Score=75.96 Aligned_cols=166 Identities=15% Similarity=0.172 Sum_probs=110.8
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
+.+++.+.+.+.. +..+. . ...+++|++|++++| .++.+. . +..+++|++|+++++. +..+..
T Consensus 18 l~~l~~l~l~~~~-i~~~~-~----~~~l~~L~~L~l~~n-~i~~l~-~--l~~l~~L~~L~L~~N~-i~~~~~------ 80 (263)
T 1xeu_A 18 LANAVKQNLGKQS-VTDLV-S----QKELSGVQNFNGDNS-NIQSLA-G--MQFFTNLKELHLSHNQ-ISDLSP------ 80 (263)
T ss_dssp HHHHHHHHHTCSC-TTSEE-C----HHHHTTCSEEECTTS-CCCCCT-T--GGGCTTCCEEECCSSC-CCCCGG------
T ss_pred HHHHHHHHhcCCC-ccccc-c----hhhcCcCcEEECcCC-Ccccch-H--HhhCCCCCEEECCCCc-cCCChh------
Confidence 5556666666432 34333 1 146799999999998 466654 2 6789999999999874 444432
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
...+++|+.|+++++ +++.++. +.. ++|+.|++++| .+..+. . ...++ +|+.|++ .++. +
T Consensus 81 -----l~~l~~L~~L~L~~N-~l~~l~~----~~~-~~L~~L~L~~N-~l~~~~--~-l~~l~---~L~~L~L-s~N~-i 140 (263)
T 1xeu_A 81 -----LKDLTKLEELSVNRN-RLKNLNG----IPS-ACLSRLFLDNN-ELRDTD--S-LIHLK---NLEILSI-RNNK-L 140 (263)
T ss_dssp -----GTTCSSCCEEECCSS-CCSCCTT----CCC-SSCCEEECCSS-CCSBSG--G-GTTCT---TCCEEEC-TTSC-C
T ss_pred -----hccCCCCCEEECCCC-ccCCcCc----ccc-CcccEEEccCC-ccCCCh--h-hcCcc---cccEEEC-CCCc-C
Confidence 113579999999986 4666654 222 89999999987 566652 2 22445 8999999 7765 4
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCC
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 266 (326)
+.+.. ...+++|+.|++.++. ++.+. .. ..+++|+.|++++++
T Consensus 141 ~~~~~------------l~~l~~L~~L~L~~N~-i~~~~-~l--~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 141 KSIVM------------LGFLSKLEVLDLHGNE-ITNTG-GL--TRLKKVNWIDLTGQK 183 (263)
T ss_dssp CBCGG------------GGGCTTCCEEECTTSC-CCBCT-TS--TTCCCCCEEEEEEEE
T ss_pred CCChH------------HccCCCCCEEECCCCc-CcchH-Hh--ccCCCCCEEeCCCCc
Confidence 44321 3356889999999864 44442 12 267899999998764
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.48 E-value=5.8e-08 Score=88.07 Aligned_cols=222 Identities=11% Similarity=-0.042 Sum_probs=127.3
Q ss_pred CCCccEEEcccCCCcccccccC-CCCCCCCC-CccEEEEecCCCCCcCCchhHHhhC-----CCCCEEEEccCcCcceec
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQ-ALPVSFFN-NLEELEVDDCTNMSSAIPANLLRCL-----NNLRCLEVRNCDSIEEVL 120 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~-~l~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~l~~c~~l~~l~ 120 (326)
.++|++|+++++. +..+.... .-....++ +|++|++++| .++...+.. +..+ ++|++|++++|. +....
T Consensus 21 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~-l~~~~ 96 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDE-LVQILAAIPANVTSLNLSGNF-LSYKS 96 (362)
T ss_dssp CTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHH-HHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred CCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHH-HHHHHhccCCCccEEECcCCc-CChHH
Confidence 4569999999876 44322200 00013456 8999999999 466665543 3333 999999999986 33221
Q ss_pred cccccccccCcCCCCCCCccEEecCCCcccccccccc--ccccc-cccccEEeEecCCCCCccCcchhhhccCCC-CCCc
Q 020456 121 HLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFT--ENIIE-MLMLWSLTIENCPNMETFVSNSVVHVTTDN-KKPQ 196 (326)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~--~~~~~-~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~-~~L~ 196 (326)
.. .... .+....++|+.|+++++. ++...... ..+.. .++|++|++++| .+.......+...+... ++|+
T Consensus 97 ~~-~l~~---~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 97 SD-ELVK---TLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp HH-HHHH---HHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCC
T ss_pred HH-HHHH---HHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCcccc
Confidence 10 0000 000112599999999876 44332210 01223 269999999987 55544333322221111 1899
Q ss_pred eEEecccCcccceeccccccccCccccceeee-cccceeecccCCCcce-----ecCCCccccCCcccEEEeccCCcccc
Q 020456 197 KLTLEENFLLADQVQPLFDEKVGEEVKGCIVF-ERMNYLTLDCLPSLTS-----FCLGNYALEFPSLEQVVVRQCPKMKI 270 (326)
Q Consensus 197 ~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~L~~L~i~~c~~l~~ 270 (326)
+|++ .+|. ++...... .......+ ++|++|++.++. ++. ++.... ...++|++|+++++. ++.
T Consensus 171 ~L~L-s~n~-l~~~~~~~------l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~-l~~ 239 (362)
T 3goz_A 171 SLNL-RGNN-LASKNCAE------LAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFS-SIPNHVVSLNLCLNC-LHG 239 (362)
T ss_dssp EEEC-TTSC-GGGSCHHH------HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHH-HSCTTCCEEECCSSC-CCC
T ss_pred Eeee-cCCC-CchhhHHH------HHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHh-cCCCCceEEECcCCC-CCc
Confidence 9999 8875 32221110 01112233 489999999975 443 221111 013599999998874 332
Q ss_pred -----ccCCCCCCCCccEEEecccc
Q 020456 271 -----FSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 271 -----l~~~~~~~~~L~~L~l~~c~ 290 (326)
+......+++|++|++++|.
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHHhcCCCccEEEeccCC
Confidence 23344568899999999985
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.47 E-value=2.5e-07 Score=72.65 Aligned_cols=112 Identities=23% Similarity=0.249 Sum_probs=53.0
Q ss_pred CCCccEEEcccCCCc-ccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 48 FCDIEYLQLSDFPCL-KEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l-~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.++|+.|++.++.-. ..++... ..+++|++|++++| .++.. . .++.+++|++|+++++.--..++...
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~l~~n-~l~~~-~--~~~~l~~L~~L~Ls~n~i~~~~~~~~--- 84 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLT----DEFEELEFLSTINV-GLTSI-A--NLPKLNKLKKLELSDNRVSGGLEVLA--- 84 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCC----TTCTTCCEEECTTS-CCCCC-T--TCCCCTTCCEEECCSSCCCSCTHHHH---
T ss_pred CccCeEEEccCCcCChhHHHHHH----hhcCCCcEEECcCC-CCCCc-h--hhhcCCCCCEEECCCCcccchHHHHh---
Confidence 466677777665432 1322211 45566666666666 34444 1 14556666666666653211111000
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETF 180 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~ 180 (326)
..+++|+.|+++++. ++.++.. ..+..+++|++|++++| .++..
T Consensus 85 -------~~l~~L~~L~ls~N~-i~~~~~~-~~~~~l~~L~~L~l~~N-~l~~~ 128 (149)
T 2je0_A 85 -------EKCPNLTHLNLSGNK-IKDLSTI-EPLKKLENLKSLDLFNC-EVTNL 128 (149)
T ss_dssp -------HHCTTCCEEECTTSC-CCSHHHH-GGGGGCTTCCEEECTTC-GGGGS
T ss_pred -------hhCCCCCEEECCCCc-CCChHHH-HHHhhCCCCCEEeCcCC-cccch
Confidence 013455555555543 3332200 03445566666666655 34443
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.46 E-value=2.1e-06 Score=82.42 Aligned_cols=189 Identities=16% Similarity=0.135 Sum_probs=122.7
Q ss_pred CCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCC
Q 020456 12 PKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMS 91 (326)
Q Consensus 12 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 91 (326)
.+|+.|++.+.+.. .+... .+++|++|+++++. +..+ + ..+++|++|+++++ +++
T Consensus 59 ~~L~~L~Ls~n~L~---~lp~~-------------l~~~L~~L~Ls~N~-l~~i------p-~~l~~L~~L~Ls~N-~l~ 113 (571)
T 3cvr_A 59 NQFSELQLNRLNLS---SLPDN-------------LPPQITVLEITQNA-LISL------P-ELPASLEYLDACDN-RLS 113 (571)
T ss_dssp TTCSEEECCSSCCS---CCCSC-------------CCTTCSEEECCSSC-CSCC------C-CCCTTCCEEECCSS-CCS
T ss_pred CCccEEEeCCCCCC---ccCHh-------------HcCCCCEEECcCCC-Cccc------c-cccCCCCEEEccCC-CCC
Confidence 48888988833222 11111 15789999999764 3443 3 45799999999998 466
Q ss_pred cCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeE
Q 020456 92 SAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTI 171 (326)
Q Consensus 92 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l 171 (326)
.++. +. .+|++|+++++. +..++. .+++|+.|+++++. ++.++. .+++|+.|++
T Consensus 114 ~ip~---l~--~~L~~L~Ls~N~-l~~lp~-------------~l~~L~~L~Ls~N~-l~~lp~------~l~~L~~L~L 167 (571)
T 3cvr_A 114 TLPE---LP--ASLKHLDVDNNQ-LTMLPE-------------LPALLEYINADNNQ-LTMLPE------LPTSLEVLSV 167 (571)
T ss_dssp CCCC---CC--TTCCEEECCSSC-CSCCCC-------------CCTTCCEEECCSSC-CSCCCC------CCTTCCEEEC
T ss_pred Ccch---hh--cCCCEEECCCCc-CCCCCC-------------cCccccEEeCCCCc-cCcCCC------cCCCcCEEEC
Confidence 6543 22 299999999864 433321 35799999998864 666653 4689999999
Q ss_pred ecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCcc
Q 020456 172 ENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYA 251 (326)
Q Consensus 172 ~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 251 (326)
+++ .++.++. +. . +|+.|++ .++. ++.+.... ..-....+.|+.|++.++ .++.+|....
T Consensus 168 s~N-~L~~lp~--l~---~---~L~~L~L-s~N~-L~~lp~~~-------~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~- 227 (571)
T 3cvr_A 168 RNN-QLTFLPE--LP---E---SLEALDV-STNL-LESLPAVP-------VRNHHSEETEIFFRCREN-RITHIPENIL- 227 (571)
T ss_dssp CSS-CCSCCCC--CC---T---TCCEEEC-CSSC-CSSCCCCC---------------CCEEEECCSS-CCCCCCGGGG-
T ss_pred CCC-CCCCcch--hh---C---CCCEEEC-cCCC-CCchhhHH-------HhhhcccccceEEecCCC-cceecCHHHh-
Confidence 987 4666543 32 4 8999999 7764 44432210 000011123499999985 5777776544
Q ss_pred ccCCcccEEEeccCCcccccc
Q 020456 252 LEFPSLEQVVVRQCPKMKIFS 272 (326)
Q Consensus 252 ~~~~~L~~L~i~~c~~l~~l~ 272 (326)
.+++|++|++++++--...|
T Consensus 228 -~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 228 -SLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp -GSCTTEEEECCSSSCCHHHH
T ss_pred -cCCCCCEEEeeCCcCCCcCH
Confidence 68999999998887544333
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.46 E-value=1.8e-06 Score=72.93 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=15.1
Q ss_pred CCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 76 FNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
+++|++|+++++. +..+++. .+..+++|++|+++++
T Consensus 63 l~~L~~L~L~~N~-l~~i~~~-~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 63 LINLKELYLGSNQ-LGALPVG-VFDSLTQLTVLDLGTN 98 (229)
T ss_dssp CTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSS
T ss_pred ccCCcEEECCCCC-CCCcChh-hcccCCCcCEEECCCC
Confidence 4445555554442 3333221 1334444555554443
No 112
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.44 E-value=9.3e-07 Score=71.48 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=28.4
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
++|+.|+++++. +..+ ... ..+++|++|+++++. ++.+++. ++..+++|++|+++++
T Consensus 42 ~~L~~L~Ls~N~-l~~~-~~l----~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 42 DQFDAIDFSDNE-IRKL-DGF----PLLRRLKTLLVNNNR-ICRIGEG-LDQALPDLTELILTNN 98 (176)
T ss_dssp TCCSEEECCSSC-CCEE-CCC----CCCSSCCEEECCSSC-CCEECSC-HHHHCTTCCEEECCSC
T ss_pred CCCCEEECCCCC-CCcc-ccc----ccCCCCCEEECCCCc-ccccCcc-hhhcCCCCCEEECCCC
Confidence 366666666543 2322 111 345566666666653 4444322 2355666666666554
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.42 E-value=1.8e-06 Score=72.97 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=30.5
Q ss_pred CCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCcc
Q 020456 102 LNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETF 180 (326)
Q Consensus 102 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~ 180 (326)
.++|++|+++++. +..+.+ .....+++|+.|++++.. ++.++.. .+..+++|+.|+++++ .++.+
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~~---------~~~~~l~~L~~L~L~~N~-l~~i~~~--~~~~l~~L~~L~Ls~N-~l~~l 103 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLEP---------GVFDSLINLKELYLGSNQ-LGALPVG--VFDSLTQLTVLDLGTN-QLTVL 103 (229)
T ss_dssp CTTCSEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSSC-CCCCCTT--TTTTCTTCCEEECCSS-CCCCC
T ss_pred CCCCCEEEcCCCc-cCccCH---------HHhhCccCCcEEECCCCC-CCCcChh--hcccCCCcCEEECCCC-cCCcc
Confidence 3677777777653 222211 011123456666665543 3443321 2344555666666554 34444
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.42 E-value=1.7e-07 Score=73.66 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=16.2
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecC
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENC 174 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C 174 (326)
+++|+.|+++++ .++.+ . .+..+++|+.|++++|
T Consensus 41 l~~L~~L~l~~n-~l~~~-~---~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 41 FEELEFLSTINV-GLTSI-A---NLPKLNKLKKLELSDN 74 (149)
T ss_dssp CTTCCEEECTTS-CCCCC-T---TCCCCTTCCEEECCSS
T ss_pred cCCCcEEECcCC-CCCCc-h---hhhcCCCCCEEECCCC
Confidence 345555555554 23333 1 3444555555555554
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.42 E-value=2.6e-06 Score=70.65 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=16.7
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecC
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENC 174 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C 174 (326)
+++|+.|++.++ +++.++.. .+..+++|++|+++++
T Consensus 51 l~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 51 LTSLTQLYLGGN-KLQSLPNG--VFNKLTSLTYLNLSTN 86 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTT--TTTTCTTCCEEECCSS
T ss_pred cccCcEEECCCC-ccCccChh--hcCCCCCcCEEECCCC
Confidence 345555555553 23333321 1234555555555554
No 116
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.37 E-value=2.7e-07 Score=74.48 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=23.9
Q ss_pred CccEEecCCCccccccccccccccccccccEEeEecCCCCCcc
Q 020456 138 KLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETF 180 (326)
Q Consensus 138 ~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~ 180 (326)
+|++|+|++|++++.--. ..+..+++|++|++++|+++++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl--~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGI--IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HCCEEEEESCTTCCHHHH--HHGGGCTTCCEEEEESCTTCCCH
T ss_pred CCCEEEcCCCCcCCHHHH--HHHhcCCCCCEEECCCCCCCCch
Confidence 344444444444432100 03345788888888888888775
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.34 E-value=5.3e-06 Score=69.64 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=17.5
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
+.+++|+++++ +++.+.+...+..+++|++|+++++
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N 67 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN 67 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC
Confidence 34555555554 2444433223445555555555553
No 118
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=1.8e-07 Score=75.47 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=9.2
Q ss_pred ccccccEEeEecCCCCCcc
Q 020456 162 EMLMLWSLTIENCPNMETF 180 (326)
Q Consensus 162 ~~~~L~~L~l~~C~~l~~~ 180 (326)
.+++|++|++++|.++++.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~ 101 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDG 101 (176)
T ss_dssp TCSCCCEEEEESCTTCCHH
T ss_pred CCCCCCEEEeCCCCccCHH
Confidence 3445555555555544443
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.33 E-value=3.8e-06 Score=74.94 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=24.4
Q ss_pred CCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 76 FNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
+++|++|.+.+ +++.+... .+..|++|++|.+.+.
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~-aF~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDA-AFKGCDNLKICQIRKK 134 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTT-TTTTCTTCCEEEBCCS
T ss_pred cCCCcEEECCc--cccchhHH-HhhcCcccceEEcCCC
Confidence 67888888877 56665443 3677888888888764
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.27 E-value=8.3e-06 Score=68.44 Aligned_cols=128 Identities=17% Similarity=0.178 Sum_probs=70.9
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
++|++|++.+.. +..+.... ...+++|++|+++++. ++.+.+.. +..+++|++|+++++. +..++.
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~---~~~l~~L~~L~Ls~N~-i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~------- 97 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGA---FSPYKKLRRIDLSNNQ-ISELAPDA-FQGLRSLNSLVLYGNK-ITELPK------- 97 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTS---STTCTTCCEEECCSSC-CCEECTTT-TTTCSSCCEEECCSSC-CCCCCT-------
T ss_pred cCCCEEECCCCc-CCCcCHhH---hhCCCCCCEEECCCCc-CCCcCHHH-hhCCcCCCEEECCCCc-CCccCH-------
Confidence 577778777643 34433322 1456778888887773 55554433 5667778888777753 333311
Q ss_pred cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEe
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTL 200 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i 200 (326)
.....+++|+.|++++.. ++.+... .+..+++|+.|+++++ .++.+.+.. ...+. +|++|++
T Consensus 98 --~~f~~l~~L~~L~L~~N~-l~~~~~~--~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~---~L~~L~L 159 (220)
T 2v9t_B 98 --SLFEGLFSLQLLLLNANK-INCLRVD--AFQDLHNLNLLSLYDN-KLQTIAKGT-FSPLR---AIQTMHL 159 (220)
T ss_dssp --TTTTTCTTCCEEECCSSC-CCCCCTT--TTTTCTTCCEEECCSS-CCSCCCTTT-TTTCT---TCCEEEC
T ss_pred --hHccCCCCCCEEECCCCC-CCEeCHH--HcCCCCCCCEEECCCC-cCCEECHHH-HhCCC---CCCEEEe
Confidence 011134577777777643 4443221 3455677777777764 455553322 22333 6777776
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.22 E-value=8.2e-06 Score=68.48 Aligned_cols=83 Identities=13% Similarity=0.088 Sum_probs=38.4
Q ss_pred CCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCc
Q 020456 103 NNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVS 182 (326)
Q Consensus 103 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~ 182 (326)
++|++|+++++. +..+... ....+++|+.|++++.. ++.+... .+..+++|+.|+++++ .++.++
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~---------~~~~l~~L~~L~Ls~N~-i~~~~~~--~~~~l~~L~~L~Ls~N-~l~~l~- 96 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPG---------AFSPYKKLRRIDLSNNQ-ISELAPD--AFQGLRSLNSLVLYGN-KITELP- 96 (220)
T ss_dssp TTCCEEECCSSC-CCEECTT---------SSTTCTTCCEEECCSSC-CCEECTT--TTTTCSSCCEEECCSS-CCCCCC-
T ss_pred cCCCEEECCCCc-CCCcCHh---------HhhCCCCCCEEECCCCc-CCCcCHH--HhhCCcCCCEEECCCC-cCCccC-
Confidence 567777776643 3333210 11123466666666543 3333111 3445566666666553 344442
Q ss_pred chhhhccCCCCCCceEEecccC
Q 020456 183 NSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 183 ~~~~~~~~~~~~L~~L~i~~~c 204 (326)
......+. +|++|++ .++
T Consensus 97 ~~~f~~l~---~L~~L~L-~~N 114 (220)
T 2v9t_B 97 KSLFEGLF---SLQLLLL-NAN 114 (220)
T ss_dssp TTTTTTCT---TCCEEEC-CSS
T ss_pred HhHccCCC---CCCEEEC-CCC
Confidence 22222333 5666655 443
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.22 E-value=1.2e-05 Score=67.48 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=18.4
Q ss_pred cCCcccEEEeccCCccccc-cCCCCCCCCccEEEeccc
Q 020456 253 EFPSLEQVVVRQCPKMKIF-SQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 253 ~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~L~l~~c 289 (326)
.+++|++|+++++ .++.+ |..+..+++|++|+++++
T Consensus 127 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 127 GLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence 4455555555443 23333 334445566666666554
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.19 E-value=9e-06 Score=73.53 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=87.3
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.+.++.|++++. .+..++... +. ..+++|++|+++++ +++.+.+.. +..+++|++|+++++. ++.++..
T Consensus 38 ~~~l~~L~Ls~N-~l~~l~~~~-~~-~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~----- 106 (361)
T 2xot_A 38 PSYTALLDLSHN-NLSRLRAEW-TP-TRLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSNH-LHTLDEF----- 106 (361)
T ss_dssp CTTCSEEECCSS-CCCEECTTS-SS-SCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-CCEECTT-----
T ss_pred CCCCCEEECCCC-CCCccChhh-hh-hcccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCCc-CCcCCHH-----
Confidence 456888998865 345544433 11 26789999999887 466665433 6778999999998864 5444221
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhh---hccCCCCCCceEEecccC
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVV---HVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~---~~~~~~~~L~~L~i~~~c 204 (326)
....+++|+.|+++++. +..+... .+..+++|+.|+++++ .+..++. ... ..+. +|+.|++ .++
T Consensus 107 ----~~~~l~~L~~L~L~~N~-i~~~~~~--~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~~~~l~---~L~~L~L-~~N 173 (361)
T 2xot_A 107 ----LFSDLQALEVLLLYNNH-IVVVDRN--AFEDMAQLQKLYLSQN-QISRFPV-ELIKDGNKLP---KLMLLDL-SSN 173 (361)
T ss_dssp ----TTTTCTTCCEEECCSSC-CCEECTT--TTTTCTTCCEEECCSS-CCCSCCG-GGTC----CT---TCCEEEC-CSS
T ss_pred ----HhCCCcCCCEEECCCCc-ccEECHH--HhCCcccCCEEECCCC-cCCeeCH-HHhcCcccCC---cCCEEEC-CCC
Confidence 11234688999988764 4444321 4667888999999885 5666633 322 2344 8888888 665
Q ss_pred ccccee
Q 020456 205 LLADQV 210 (326)
Q Consensus 205 ~~l~~~ 210 (326)
. ++.+
T Consensus 174 ~-l~~l 178 (361)
T 2xot_A 174 K-LKKL 178 (361)
T ss_dssp C-CCCC
T ss_pred C-CCcc
Confidence 3 4433
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.16 E-value=6.3e-06 Score=74.57 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=93.3
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHh-hCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLR-CLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRF 153 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~-~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 153 (326)
..++++.|+++++ +++.+.+.. +. .+++|++|+++++. +..+... ....+++|+.|++++.. ++.+
T Consensus 37 ~~~~l~~L~Ls~N-~l~~l~~~~-~~~~l~~L~~L~L~~N~-i~~i~~~---------~~~~l~~L~~L~Ls~N~-l~~~ 103 (361)
T 2xot_A 37 LPSYTALLDLSHN-NLSRLRAEW-TPTRLTNLHSLLLSHNH-LNFISSE---------AFVPVPNLRYLDLSSNH-LHTL 103 (361)
T ss_dssp CCTTCSEEECCSS-CCCEECTTS-SSSCCTTCCEEECCSSC-CCEECTT---------TTTTCTTCCEEECCSSC-CCEE
T ss_pred CCCCCCEEECCCC-CCCccChhh-hhhcccccCEEECCCCc-CCccChh---------hccCCCCCCEEECCCCc-CCcC
Confidence 3467899999987 466665543 33 78999999998864 4444211 11235688999988854 6665
Q ss_pred ccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccce
Q 020456 154 CNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNY 233 (326)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 233 (326)
+.. .+..+++|+.|+++++ .+..+.+..+ ..+. +|++|++ .++. ++.+.... .. ....+++|+.
T Consensus 104 ~~~--~~~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~---~L~~L~L-~~N~-l~~l~~~~------~~-~~~~l~~L~~ 167 (361)
T 2xot_A 104 DEF--LFSDLQALEVLLLYNN-HIVVVDRNAF-EDMA---QLQKLYL-SQNQ-ISRFPVEL------IK-DGNKLPKLML 167 (361)
T ss_dssp CTT--TTTTCTTCCEEECCSS-CCCEECTTTT-TTCT---TCCEEEC-CSSC-CCSCCGGG------TC-----CTTCCE
T ss_pred CHH--HhCCCcCCCEEECCCC-cccEECHHHh-CCcc---cCCEEEC-CCCc-CCeeCHHH------hc-CcccCCcCCE
Confidence 532 3567788899988875 4655533333 3344 8888888 6654 43332210 00 0134678888
Q ss_pred eecccCCCcceecCCCccccCCc--ccEEEecc
Q 020456 234 LTLDCLPSLTSFCLGNYALEFPS--LEQVVVRQ 264 (326)
Q Consensus 234 L~l~~c~~l~~~~~~~~~~~~~~--L~~L~i~~ 264 (326)
|++.+. .++.++..... .++. |+.|.+.+
T Consensus 168 L~L~~N-~l~~l~~~~~~-~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 168 LDLSSN-KLKKLPLTDLQ-KLPAWVKNGLYLHN 198 (361)
T ss_dssp EECCSS-CCCCCCHHHHH-HSCHHHHTTEECCS
T ss_pred EECCCC-CCCccCHHHhh-hccHhhcceEEecC
Confidence 888774 45554432111 3443 35566654
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.05 E-value=4.7e-05 Score=62.29 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=29.3
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
++|++|++.+. .++.++..... .+++|++|+++++.--...|..+..+++|++|+++++
T Consensus 78 ~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 78 SHIQELQLGEN-KIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TTCCEEECCSC-CCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred ccCCEEECCCC-cCCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 44555555442 23333332221 4556666666554322223445555667777777665
No 126
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=2.5e-06 Score=77.29 Aligned_cols=57 Identities=19% Similarity=0.192 Sum_probs=27.1
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHH-hhCCCCCEEEEc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLL-RCLNNLRCLEVR 111 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~l~~L~~L~l~ 111 (326)
.+|+|++|.+.++..+. ++....++|++|.+..|. +.......+. ..+|+|++|++.
T Consensus 170 ~~P~L~~L~L~g~~~l~-------l~~~~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLS-------IGKKPRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TCTTCCEEEEECCBTCB-------CCSCBCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEE
T ss_pred cCCCCcEEEEeCCCCce-------eccccCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEe
Confidence 36667777666543221 111124666677666553 2221111111 146666666664
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.01 E-value=9.5e-06 Score=65.44 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=40.2
Q ss_pred hCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCcc
Q 020456 101 CLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETF 180 (326)
Q Consensus 101 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~ 180 (326)
.+++|++|+++++. +..+.. +...+++|+.|+++++ .++.+. .+..+++|+.|+++++ .+..+
T Consensus 17 ~~~~L~~L~l~~n~-l~~i~~----------~~~~~~~L~~L~Ls~N-~l~~~~----~l~~l~~L~~L~Ls~N-~l~~~ 79 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPVIEN----------LGATLDQFDAIDFSDN-EIRKLD----GFPLLRRLKTLLVNNN-RICRI 79 (176)
T ss_dssp CTTSCEEEECTTSC-CCSCCC----------GGGGTTCCSEEECCSS-CCCEEC----CCCCCSSCCEEECCSS-CCCEE
T ss_pred CcCCceEEEeeCCC-CchhHH----------hhhcCCCCCEEECCCC-CCCccc----ccccCCCCCEEECCCC-ccccc
Confidence 45667777776653 332211 1112346666666664 244431 4455666666666654 34444
Q ss_pred CcchhhhccCCCCCCceEEecccC
Q 020456 181 VSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 181 ~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
+ ..+...++ +|++|++ .++
T Consensus 80 ~-~~~~~~l~---~L~~L~L-~~N 98 (176)
T 1a9n_A 80 G-EGLDQALP---DLTELIL-TNN 98 (176)
T ss_dssp C-SCHHHHCT---TCCEEEC-CSC
T ss_pred C-cchhhcCC---CCCEEEC-CCC
Confidence 2 22222333 5666666 444
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=2.1e-05 Score=70.05 Aligned_cols=102 Identities=18% Similarity=0.132 Sum_probs=71.9
Q ss_pred cccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccc-eeecccCCC
Q 020456 163 MLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMN-YLTLDCLPS 241 (326)
Q Consensus 163 ~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~c~~ 241 (326)
+++|+++++.++ +++.+ +...+..+. +|+++.+ .+- ++.+.... -..+++|+ .+.+.+ +
T Consensus 225 ~~~L~~l~L~~n-~i~~I-~~~aF~~~~---~L~~l~l-~~n--i~~I~~~a----------F~~~~~L~~~l~l~~--~ 284 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTI-PDFTFAQKK---YLLKIKL-PHN--LKTIGQRV----------FSNCGRLAGTLELPA--S 284 (329)
T ss_dssp CTTCCEEECTTB-CCCEE-CTTTTTTCT---TCCEEEC-CTT--CCEECTTT----------TTTCTTCCEEEEECT--T
T ss_pred cCCCeEEECCCC-Cccee-cHhhhhCCC---CCCEEEC-Ccc--cceehHHH----------hhCChhccEEEEEcc--c
Confidence 688999999864 47777 444555677 8999999 663 66654331 22356788 888877 7
Q ss_pred cceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEe
Q 020456 242 LTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNV 286 (326)
Q Consensus 242 l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l 286 (326)
++.+...... .|++|+++.+.. ..++.++. .+..+++|++++.
T Consensus 285 l~~I~~~aF~-~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 285 VTAIEFGAFM-GCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTTTT-TCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred ceEEchhhhh-CCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 7888765544 789999998843 46766766 5557899999874
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.97 E-value=5.8e-05 Score=60.70 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=34.7
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCC-CCCCCccEEEeccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGV-LDTPMLNKVNVTEE 289 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~L~l~~c 289 (326)
+++|++|++.++ .++.++..... .+++|++|+++++ .++.+|... ..+++|++|+++++
T Consensus 75 l~~L~~L~l~~N-~l~~~~~~~~~-~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 75 LTKLTILYLHEN-KLQSLPNGVFD-KLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCEEECCCC-CccccCHHHhh-CCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 455666666553 34444433221 5667777777665 455566543 45778888888776
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.91 E-value=0.00015 Score=58.14 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=49.4
Q ss_pred CCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccc
Q 020456 76 FNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCN 155 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 155 (326)
+++|++|+++++. ++.+++. .++.+++|++|+++++. +..++.. ....+++|+.|++++. +++.++.
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~l~~N-~l~~~~~ 93 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPHG-VFDKLTQLTKLSLSQNQ-IQSLPDG---------VFDKLTKLTILYLHEN-KLQSLPN 93 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCTT-TTTTCTTCSEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCcEEEeCCCc-ccEeCHH-HhcCcccccEEECCCCc-ceEeChh---------HccCCCccCEEECCCC-CccccCH
Confidence 3556666666553 4333332 23455666666665542 2222110 0112345555555553 2333332
Q ss_pred ccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC
Q 020456 156 FTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
. .+..+++|+.|+++++ .++.+++ .....++ +|++|++ .++
T Consensus 94 ~--~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~---~L~~L~l-~~N 134 (177)
T 2o6r_A 94 G--VFDKLTQLKELALDTN-QLKSVPD-GIFDRLT---SLQKIWL-HTN 134 (177)
T ss_dssp T--TTTTCTTCCEEECCSS-CCSCCCT-TTTTTCT---TCCEEEC-CSS
T ss_pred H--HhhCCcccCEEECcCC-cceEeCH-HHhcCCc---ccCEEEe-cCC
Confidence 1 2344566666666654 4444422 2222333 6666666 544
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.86 E-value=0.00013 Score=59.51 Aligned_cols=105 Identities=17% Similarity=0.168 Sum_probs=49.7
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccc
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNF 156 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 156 (326)
.+|++|+++++ +++.+.+...++.+++|++|+++++. ++.+.+. ....+++|+.|++++.. ++.++..
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---------~~~~l~~L~~L~Ls~N~-l~~~~~~ 96 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN---------AFEGASHIQELQLGENK-IKEISNK 96 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT---------TTTTCTTCCEEECCSCC-CCEECSS
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHh---------HcCCcccCCEEECCCCc-CCccCHH
Confidence 46666666665 34444443234556666666666543 2222110 01123456666665532 3333321
Q ss_pred cccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEe
Q 020456 157 TENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTL 200 (326)
Q Consensus 157 ~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i 200 (326)
.+..+++|++|+++++ .+..+.+..+. .++ +|++|++
T Consensus 97 --~~~~l~~L~~L~L~~N-~l~~~~~~~~~-~l~---~L~~L~L 133 (192)
T 1w8a_A 97 --MFLGLHQLKTLNLYDN-QISCVMPGSFE-HLN---SLTSLNL 133 (192)
T ss_dssp --SSTTCTTCCEEECCSS-CCCEECTTSST-TCT---TCCEEEC
T ss_pred --HhcCCCCCCEEECCCC-cCCeeCHHHhh-cCC---CCCEEEe
Confidence 2445566666666654 34444232222 233 5666666
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.82 E-value=0.0003 Score=57.52 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=62.5
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFC 154 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 154 (326)
..++|++|++.++ +++.++. .+..+++|++|+++++. ++.+.. .....+++|+.|++++.. ++.++
T Consensus 29 ~~~~l~~L~L~~n-~i~~ip~--~~~~l~~L~~L~Ls~N~-i~~i~~---------~~f~~l~~L~~L~Ls~N~-l~~i~ 94 (193)
T 2wfh_A 29 IPRDVTELYLDGN-QFTLVPK--ELSNYKHLTLIDLSNNR-ISTLSN---------QSFSNMTQLLTLILSYNR-LRCIP 94 (193)
T ss_dssp CCTTCCEEECCSS-CCCSCCG--GGGGCTTCCEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSSC-CCBCC
T ss_pred CCCCCCEEECCCC-cCchhHH--HhhcccCCCEEECCCCc-CCEeCH---------hHccCCCCCCEEECCCCc-cCEeC
Confidence 3467888888776 3555542 26778888888887753 332211 011134577777777643 55544
Q ss_pred cccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEeccc
Q 020456 155 NFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEEN 203 (326)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~ 203 (326)
.. .+..+++|+.|+++++ .++.+++ .....+. +|+.|++ .+
T Consensus 95 ~~--~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~---~L~~L~L-~~ 135 (193)
T 2wfh_A 95 PR--TFDGLKSLRLLSLHGN-DISVVPE-GAFNDLS---ALSHLAI-GA 135 (193)
T ss_dssp TT--TTTTCTTCCEEECCSS-CCCBCCT-TTTTTCT---TCCEEEC-CS
T ss_pred HH--HhCCCCCCCEEECCCC-CCCeeCh-hhhhcCc---cccEEEe-CC
Confidence 31 3556778888888774 4555532 2233344 7777777 53
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.82 E-value=0.0015 Score=59.82 Aligned_cols=194 Identities=8% Similarity=0.114 Sum_probs=98.4
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
.+|+.+.+.+ .+..+.... ...|++|+++.+... +++.+.... +. +.+|+.+.+.+ .++.+...
T Consensus 157 ~~L~~i~lp~--~l~~I~~~a---F~~c~~L~~l~l~~n-~l~~I~~~a-F~-~~~L~~l~lp~--~l~~I~~~------ 220 (401)
T 4fdw_A 157 STVQEIVFPS--TLEQLKEDI---FYYCYNLKKADLSKT-KITKLPAST-FV-YAGIEEVLLPV--TLKEIGSQ------ 220 (401)
T ss_dssp CCCCEEECCT--TCCEECSST---TTTCTTCCEEECTTS-CCSEECTTT-TT-TCCCSEEECCT--TCCEECTT------
T ss_pred CCceEEEeCC--CccEehHHH---hhCcccCCeeecCCC-cceEechhh-Ee-ecccCEEEeCC--chheehhh------
Confidence 3688887764 455544333 145678888888764 455555443 22 57777777753 24433110
Q ss_pred cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc-
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA- 207 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l- 207 (326)
.-...++|+.+.+.+ +++.+... .+.. .+|+++.+.+ +++.+ ....+..+. +|+.+.+ .+...-
T Consensus 221 ---aF~~~~~L~~l~l~~--~l~~I~~~--aF~~-~~L~~i~lp~--~i~~I-~~~aF~~c~---~L~~l~l-~~~~~~~ 285 (401)
T 4fdw_A 221 ---AFLKTSQLKTIEIPE--NVSTIGQE--AFRE-SGITTVKLPN--GVTNI-ASRAFYYCP---ELAEVTT-YGSTFND 285 (401)
T ss_dssp ---TTTTCTTCCCEECCT--TCCEECTT--TTTT-CCCSEEEEET--TCCEE-CTTTTTTCT---TCCEEEE-ESSCCCC
T ss_pred ---HhhCCCCCCEEecCC--CccCcccc--cccc-CCccEEEeCC--CccEE-ChhHhhCCC---CCCEEEe-CCccccC
Confidence 111234666666653 34444332 1222 5677777743 45555 233344555 7777776 432211
Q ss_pred ---ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccE
Q 020456 208 ---DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNK 283 (326)
Q Consensus 208 ---~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~ 283 (326)
..+.... -..+++|+.+.+. .+++.+...... .|++|+.+.+.. .++.++. ++..+ +|++
T Consensus 286 ~~~~~I~~~a----------F~~c~~L~~l~l~--~~i~~I~~~aF~-~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 286 DPEAMIHPYC----------LEGCPKLARFEIP--ESIRILGQGLLG-GNRKVTQLTIPA--NVTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CTTCEECTTT----------TTTCTTCCEECCC--TTCCEECTTTTT-TCCSCCEEEECT--TCCEECTTSSSSS-CCCE
T ss_pred CcccEECHHH----------hhCCccCCeEEeC--CceEEEhhhhhc-CCCCccEEEECc--cccEEcHHhCCCC-CCCE
Confidence 1111110 1123556666655 245555544432 566777776632 3554444 33345 6777
Q ss_pred EEeccc
Q 020456 284 VNVTEE 289 (326)
Q Consensus 284 L~l~~c 289 (326)
+.+.+.
T Consensus 350 l~l~~n 355 (401)
T 4fdw_A 350 VKVEGT 355 (401)
T ss_dssp EEECCS
T ss_pred EEEcCC
Confidence 777654
No 134
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.80 E-value=3.6e-05 Score=69.63 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=9.4
Q ss_pred HhhCCCCCEEEEccC
Q 020456 99 LRCLNNLRCLEVRNC 113 (326)
Q Consensus 99 ~~~l~~L~~L~l~~c 113 (326)
+..+|+|++|.++++
T Consensus 168 l~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGT 182 (362)
T ss_dssp HHTCTTCCEEEEECC
T ss_pred HhcCCCCcEEEEeCC
Confidence 455666666666655
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.78 E-value=0.0017 Score=59.39 Aligned_cols=192 Identities=13% Similarity=0.113 Sum_probs=114.4
Q ss_pred CccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccccc
Q 020456 50 DIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADK 129 (326)
Q Consensus 50 ~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 129 (326)
+|+.+.+.+ ++..|.... +. . .+|+++.+.+ .+..+... .+..|++|+.+.+.+. .+..+....
T Consensus 136 ~L~~i~l~~--~i~~I~~~a-F~--~-~~L~~i~lp~--~l~~I~~~-aF~~c~~L~~l~l~~n-~l~~I~~~a------ 199 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIGDMA-FF--N-STVQEIVFPS--TLEQLKED-IFYYCYNLKKADLSKT-KITKLPAST------ 199 (401)
T ss_dssp CCSEEECCT--TCCEECTTT-TT--T-CCCCEEECCT--TCCEECSS-TTTTCTTCCEEECTTS-CCSEECTTT------
T ss_pred CccEEEeCC--CccEECHHh-cC--C-CCceEEEeCC--CccEehHH-HhhCcccCCeeecCCC-cceEechhh------
Confidence 577777653 255544333 22 1 3688888875 45555443 3677888999888753 344442110
Q ss_pred CcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccce
Q 020456 130 EHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQ 209 (326)
Q Consensus 130 ~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~ 209 (326)
+. ..+|+.+.+.+ +++.+... .+..+++|+.+.+.+ +++.+...... . . +|+.+.+ .. .++.
T Consensus 200 --F~--~~~L~~l~lp~--~l~~I~~~--aF~~~~~L~~l~l~~--~l~~I~~~aF~-~-~---~L~~i~l-p~--~i~~ 261 (401)
T 4fdw_A 200 --FV--YAGIEEVLLPV--TLKEIGSQ--AFLKTSQLKTIEIPE--NVSTIGQEAFR-E-S---GITTVKL-PN--GVTN 261 (401)
T ss_dssp --TT--TCCCSEEECCT--TCCEECTT--TTTTCTTCCCEECCT--TCCEECTTTTT-T-C---CCSEEEE-ET--TCCE
T ss_pred --Ee--ecccCEEEeCC--chheehhh--HhhCCCCCCEEecCC--CccCccccccc-c-C---CccEEEe-CC--CccE
Confidence 11 24788888863 45555442 456678899998875 56666433332 2 3 7998888 43 2444
Q ss_pred eccccccccCccccceeeecccceeecccCCC----cceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEE
Q 020456 210 VQPLFDEKVGEEVKGCIVFERMNYLTLDCLPS----LTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKV 284 (326)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~----l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L 284 (326)
+.... -..+++|+.+.+.+... ...++..... .|++|+.+.+. ..++.++. .+..|++|+.+
T Consensus 262 I~~~a----------F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~-~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 262 IASRA----------FYYCPELAEVTTYGSTFNDDPEAMIHPYCLE-GCPKLARFEIP--ESIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp ECTTT----------TTTCTTCCEEEEESSCCCCCTTCEECTTTTT-TCTTCCEECCC--TTCCEECTTTTTTCCSCCEE
T ss_pred EChhH----------hhCCCCCCEEEeCCccccCCcccEECHHHhh-CCccCCeEEeC--CceEEEhhhhhcCCCCccEE
Confidence 32221 12346788887765221 2245444433 78899999886 35777766 44468899999
Q ss_pred Eecc
Q 020456 285 NVTE 288 (326)
Q Consensus 285 ~l~~ 288 (326)
.+..
T Consensus 329 ~lp~ 332 (401)
T 4fdw_A 329 TIPA 332 (401)
T ss_dssp EECT
T ss_pred EECc
Confidence 8854
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.78 E-value=9.9e-05 Score=70.89 Aligned_cols=126 Identities=12% Similarity=0.092 Sum_probs=81.8
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccc
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNF 156 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 156 (326)
.+|+.|+++++ +++.++ . ++.+++|+.|+++++. +..++... ..+++|+.|++++. .++.++
T Consensus 441 ~~L~~L~Ls~n-~l~~lp-~--~~~l~~L~~L~Ls~N~-l~~lp~~~----------~~l~~L~~L~Ls~N-~l~~lp-- 502 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLC-H--LEQLLLVTHLDLSHNR-LRALPPAL----------AALRCLEVLQASDN-ALENVD-- 502 (567)
T ss_dssp TTCSEEECTTS-CCSSCC-C--GGGGTTCCEEECCSSC-CCCCCGGG----------GGCTTCCEEECCSS-CCCCCG--
T ss_pred cCceEEEecCC-CCCCCc-C--ccccccCcEeecCccc-ccccchhh----------hcCCCCCEEECCCC-CCCCCc--
Confidence 36888999887 566654 3 6788999999998864 44443211 13468999999875 465555
Q ss_pred cccccccccccEEeEecCCCCCccC-cchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceee
Q 020456 157 TENIIEMLMLWSLTIENCPNMETFV-SNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLT 235 (326)
Q Consensus 157 ~~~~~~~~~L~~L~l~~C~~l~~~~-~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 235 (326)
.+..+++|+.|+++++ .++.+. |..+. .++ +|+.|++ .++. ++.+.+. .......+|+|+.|+
T Consensus 503 --~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~-~l~---~L~~L~L-~~N~-l~~~~~~-------~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 --GVANLPRLQELLLCNN-RLQQSAAIQPLV-SCP---RLVLLNL-QGNS-LCQEEGI-------QERLAEMLPSVSSIL 566 (567)
T ss_dssp --GGTTCSSCCEEECCSS-CCCSSSTTGGGG-GCT---TCCEEEC-TTSG-GGGSSSC-------TTHHHHHCTTCSEEE
T ss_pred --ccCCCCCCcEEECCCC-CCCCCCCcHHHh-cCC---CCCEEEe-cCCc-CCCCccH-------HHHHHHHCcccCccC
Confidence 4677889999999886 566664 44443 455 8999998 7765 4333221 111133468888875
Q ss_pred c
Q 020456 236 L 236 (326)
Q Consensus 236 l 236 (326)
+
T Consensus 567 l 567 (567)
T 1dce_A 567 T 567 (567)
T ss_dssp C
T ss_pred C
Confidence 3
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.66 E-value=0.00041 Score=56.71 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=29.4
Q ss_pred CCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC
Q 020456 137 PKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 137 ~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
++|+.|++++. .++.++. .+..+++|+.|+++++ .++.+.+.. ...+. +|++|++ .++
T Consensus 31 ~~l~~L~L~~n-~i~~ip~---~~~~l~~L~~L~Ls~N-~i~~i~~~~-f~~l~---~L~~L~L-s~N 88 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVPK---ELSNYKHLTLIDLSNN-RISTLSNQS-FSNMT---QLLTLIL-SYN 88 (193)
T ss_dssp TTCCEEECCSS-CCCSCCG---GGGGCTTCCEEECCSS-CCCCCCTTT-TTTCT---TCCEEEC-CSS
T ss_pred CCCCEEECCCC-cCchhHH---HhhcccCCCEEECCCC-cCCEeCHhH-ccCCC---CCCEEEC-CCC
Confidence 46666666653 3444443 4555666666666654 344442222 22233 5666665 443
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.65 E-value=1.8e-06 Score=71.21 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=54.5
Q ss_pred CCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccc
Q 020456 74 SFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRF 153 (326)
Q Consensus 74 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 153 (326)
..+++|++|+++++. ++.++ . +..+++|++|+++++. +..++... ..+++|+.|+++++ +++.+
T Consensus 45 ~~l~~L~~L~ls~n~-l~~l~-~--~~~l~~L~~L~l~~n~-l~~l~~~~----------~~~~~L~~L~L~~N-~l~~l 108 (198)
T 1ds9_A 45 STLKACKHLALSTNN-IEKIS-S--LSGMENLRILSLGRNL-IKKIENLD----------AVADTLEELWISYN-QIASL 108 (198)
T ss_dssp HHTTTCSEEECSEEE-ESCCC-C--HHHHTTCCEEEEEEEE-ECSCSSHH----------HHHHHCSEEEEEEE-ECCCH
T ss_pred hcCCCCCEEECCCCC-Ccccc-c--cccCCCCCEEECCCCC-cccccchh----------hcCCcCCEEECcCC-cCCcC
Confidence 356777777777763 55543 2 6677777777777753 22221100 01245666666554 34443
Q ss_pred ccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCc
Q 020456 154 CNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFL 205 (326)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~ 205 (326)
+ .+..+++|+.|+++++ .+..+........++ +|++|++ .++.
T Consensus 109 ~----~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~---~L~~L~l-~~N~ 151 (198)
T 1ds9_A 109 S----GIEKLVNLRVLYMSNN-KITNWGEIDKLAALD---KLEDLLL-AGNP 151 (198)
T ss_dssp H----HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTT---TCSEEEE-CSCH
T ss_pred C----ccccCCCCCEEECCCC-cCCchhHHHHHhcCC---CCCEEEe-cCCc
Confidence 3 2345566666666654 233332111122333 5666666 5443
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.65 E-value=8.3e-05 Score=73.59 Aligned_cols=58 Identities=14% Similarity=-0.011 Sum_probs=26.3
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
+++|++|+|.++. ++.+|.... .+++|++|.++++ .++.+|..+..+++|++|+++++
T Consensus 269 l~~L~~L~Ls~N~-l~~lp~~~~--~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 269 LSNLRVLDLSHNR-LTSLPAELG--SCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp GTTCCEEECTTSC-CSSCCSSGG--GGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred CCCCCEEeCcCCc-CCccChhhc--CCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence 3444444444432 333333222 4445555555443 33445544444555555555544
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.63 E-value=7.9e-05 Score=73.75 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=77.3
Q ss_pred cccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 124 (326)
...+++|+.|+++++.. ..++... ..+++|++|+|+++ .++.++.. +..+++|++|+++++. +..++...+
T Consensus 220 ~~~l~~L~~L~Ls~n~l-~~l~~~~----~~l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L~~L~Ls~N~-l~~lp~~~~ 290 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQI-FNISANI----FKYDFLTRLYLNGN-SLTELPAE--IKNLSNLRVLDLSHNR-LTSLPAELG 290 (727)
T ss_dssp --CCCCCCEEECTTSCC-SCCCGGG----GGCCSCSCCBCTTS-CCSCCCGG--GGGGTTCCEEECTTSC-CSSCCSSGG
T ss_pred hccCCCCcEEECCCCCC-CCCChhh----cCCCCCCEEEeeCC-cCcccChh--hhCCCCCCEEeCcCCc-CCccChhhc
Confidence 34478899999987654 3444443 46789999999988 46655433 6889999999999875 444422111
Q ss_pred cccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCc
Q 020456 125 LNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMET 179 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~ 179 (326)
.+++|+.|+|+++ .++.++. .+..+++|+.|++++++ +..
T Consensus 291 ----------~l~~L~~L~L~~N-~l~~lp~---~~~~l~~L~~L~L~~N~-l~~ 330 (727)
T 4b8c_D 291 ----------SCFQLKYFYFFDN-MVTTLPW---EFGNLCNLQFLGVEGNP-LEK 330 (727)
T ss_dssp ----------GGTTCSEEECCSS-CCCCCCS---STTSCTTCCCEECTTSC-CCS
T ss_pred ----------CCCCCCEEECCCC-CCCccCh---hhhcCCCccEEeCCCCc-cCC
Confidence 2468999999886 5677776 67888999999998864 443
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.50 E-value=3.1e-06 Score=77.03 Aligned_cols=13 Identities=31% Similarity=0.273 Sum_probs=7.3
Q ss_pred CCcccEEEeccCC
Q 020456 254 FPSLEQVVVRQCP 266 (326)
Q Consensus 254 ~~~L~~L~i~~c~ 266 (326)
.++|++|++++++
T Consensus 238 ~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 238 HPSLELLHLYFNE 250 (372)
T ss_dssp CSSCCEEECTTSS
T ss_pred CCCCCEEeccCCC
Confidence 4556666665543
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.45 E-value=0.0004 Score=66.67 Aligned_cols=122 Identities=18% Similarity=0.242 Sum_probs=86.5
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
..|+.|+++++ .+..++. . +.+++|+.|+++++ +++.++.. ++.+++|+.|+++++. +..++ .+
T Consensus 441 ~~L~~L~Ls~n-~l~~lp~-~----~~l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L~~L~Ls~N~-l~~lp---~l--- 504 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLCH-L----EQLLLVTHLDLSHN-RLRALPPA--LAALRCLEVLQASDNA-LENVD---GV--- 504 (567)
T ss_dssp TTCSEEECTTS-CCSSCCC-G----GGGTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSSC-CCCCG---GG---
T ss_pred cCceEEEecCC-CCCCCcC-c----cccccCcEeecCcc-cccccchh--hhcCCCCCEEECCCCC-CCCCc---cc---
Confidence 46999999976 4555443 3 57899999999998 46666543 7899999999999864 44442 11
Q ss_pred cCcCCCCCCCccEEecCCCcccccc--ccccccccccccccEEeEecCCCCCccCcc--hhhhccCCCCCCceEE
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRF--CNFTENIIEMLMLWSLTIENCPNMETFVSN--SVVHVTTDNKKPQKLT 199 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~--~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~--~~~~~~~~~~~L~~L~ 199 (326)
..+++|+.|+++++ +++.+ +. .+..+++|+.|+++++ .++..++. .+...++ +|+.|+
T Consensus 505 -----~~l~~L~~L~Ls~N-~l~~~~~p~---~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp---~L~~L~ 566 (567)
T 1dce_A 505 -----ANLPRLQELLLCNN-RLQQSAAIQ---PLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLP---SVSSIL 566 (567)
T ss_dssp -----TTCSSCCEEECCSS-CCCSSSTTG---GGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCT---TCSEEE
T ss_pred -----CCCCCCcEEECCCC-CCCCCCCcH---HHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCc---ccCccC
Confidence 13579999999986 46665 44 6788999999999986 45555332 2333455 888875
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.40 E-value=0.00093 Score=53.59 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=47.6
Q ss_pred CCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccc
Q 020456 76 FNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCN 155 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 155 (326)
.++|++|+++++. ++.+.+.. +..+++|++|+++++ .+..++.. ....+++|+.|++++. +++.++.
T Consensus 32 ~~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~i~~~---------~~~~l~~L~~L~L~~N-~l~~l~~ 98 (174)
T 2r9u_A 32 PTDKQRLWLNNNQ-ITKLEPGV-FDHLVNLQQLYFNSN-KLTAIPTG---------VFDKLTQLTQLDLNDN-HLKSIPR 98 (174)
T ss_dssp CTTCSEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTT---------TTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCcEEEeCCCC-ccccCHHH-hcCCcCCCEEECCCC-CCCccChh---------HhCCcchhhEEECCCC-ccceeCH
Confidence 3777888887763 55554432 567777888887775 34333211 1112356666666653 3444443
Q ss_pred ccccccccccccEEeEecC
Q 020456 156 FTENIIEMLMLWSLTIENC 174 (326)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~C 174 (326)
. .+..+++|+.|++++.
T Consensus 99 ~--~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 99 G--AFDNLKSLTHIYLYNN 115 (174)
T ss_dssp T--TTTTCTTCSEEECCSS
T ss_pred H--HhccccCCCEEEeCCC
Confidence 1 2455667777777654
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.32 E-value=1.2e-05 Score=66.11 Aligned_cols=124 Identities=14% Similarity=0.151 Sum_probs=74.4
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccc
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFD 215 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~ 215 (326)
+++|+.|+++++ .++.++ .+..+++|+.|++++| .++.++ . ....++ +|++|++ .++. ++.+..
T Consensus 47 l~~L~~L~ls~n-~l~~l~----~~~~l~~L~~L~l~~n-~l~~l~-~-~~~~~~---~L~~L~L-~~N~-l~~l~~--- 110 (198)
T 1ds9_A 47 LKACKHLALSTN-NIEKIS----SLSGMENLRILSLGRN-LIKKIE-N-LDAVAD---TLEELWI-SYNQ-IASLSG--- 110 (198)
T ss_dssp TTTCSEEECSEE-EESCCC----CHHHHTTCCEEEEEEE-EECSCS-S-HHHHHH---HCSEEEE-EEEE-CCCHHH---
T ss_pred CCCCCEEECCCC-CCcccc----ccccCCCCCEEECCCC-Cccccc-c-hhhcCC---cCCEEEC-cCCc-CCcCCc---
Confidence 568888888775 355554 4567788888888876 455542 2 222334 7888888 6663 333211
Q ss_pred cccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC----------CCCCCCccEEE
Q 020456 216 EKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG----------VLDTPMLNKVN 285 (326)
Q Consensus 216 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~----------~~~~~~L~~L~ 285 (326)
...+++|++|++.++. ++.++.......+++|++|++.+++--...|.. +..+++|++|+
T Consensus 111 ---------~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 111 ---------IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ---------HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ---------cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 3345788888888753 443332011125778888888777543333321 44578888876
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.30 E-value=0.0015 Score=52.09 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=46.9
Q ss_pred CCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccc
Q 020456 76 FNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCN 155 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 155 (326)
.++|++|+++++ +++.+.+.. +..+++|++|+++++. +..++.. ....+++|+.|++++. +++.++.
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~---------~f~~l~~L~~L~L~~N-~l~~~~~ 95 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEPGV-FDRLTQLTRLDLDNNQ-LTVLPAG---------VFDKLTQLTQLSLNDN-QLKSIPR 95 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCcEEEcCCC-cCCccChhh-hcCcccCCEEECCCCC-cCccChh---------hccCCCCCCEEECCCC-ccCEeCH
Confidence 477788888776 355554432 5667778888877753 4333210 1112356666666653 3444443
Q ss_pred ccccccccccccEEeEec
Q 020456 156 FTENIIEMLMLWSLTIEN 173 (326)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~ 173 (326)
. .+..+++|+.|++++
T Consensus 96 ~--~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 96 G--AFDNLKSLTHIWLLN 111 (170)
T ss_dssp T--TTTTCTTCCEEECCS
T ss_pred H--HhcCCCCCCEEEeCC
Confidence 1 245566777777765
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.09 E-value=0.0019 Score=51.77 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=35.6
Q ss_pred eecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC-CCCCCCccEEEeccc
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEE 289 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c 289 (326)
.+++|++|++.+. .++.++..... .+++|++|++++. .++.+|.. +..+++|++|+++++
T Consensus 55 ~l~~L~~L~Ls~N-~l~~i~~~~~~-~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 55 HLVNLQQLYFNSN-KLTAIPTGVFD-KLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCcCCCEEECCCC-CCCccChhHhC-CcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCC
Confidence 3456666666663 45555543321 5667777777553 45556653 556777777777766
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.08 E-value=0.0018 Score=51.59 Aligned_cols=59 Identities=19% Similarity=0.310 Sum_probs=33.3
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC-CCCCCCccEEEeccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEE 289 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c 289 (326)
+++|++|++.+. .++.++..... .+++|++|++++. .++.++.. +..+++|++|+++++
T Consensus 53 l~~L~~L~Ls~N-~l~~l~~~~f~-~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 53 LTQLTRLDLDNN-QLTVLPAGVFD-KLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccCCEEECCCC-CcCccChhhcc-CCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 455666666653 34555443322 5667777777554 45555543 445677777777665
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.01 E-value=0.00018 Score=65.28 Aligned_cols=174 Identities=14% Similarity=0.089 Sum_probs=93.0
Q ss_pred CCCccEEEcccCCCcccccccCC-CCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQA-LPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~-l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.++|++|+++++.--..-+.... ......++|++|++++|. +++.....+...+++|++|++++|. +... +..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~----~~~ 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPE----ACK 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSC-CCHH----HHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCC-CCHH----HHH
Confidence 57788888887764322121110 001233688899988884 5443333345567788888888874 3211 000
Q ss_pred cccCcCCCCCCCccEEecCCCccccc-----cccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEec
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKR-----FCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLE 201 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~-----~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~ 201 (326)
..........++|++|++++|. ++. +.. .+...++|++|++++|. +.+.....+...+..+++|++|++
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~---~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~L- 218 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLME---GLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNV- 218 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHH---HHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEEC-
T ss_pred HHHHHHHhcCCccceeeCCCCC-CChHHHHHHHH---HHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEEC-
Confidence 0000000123588889988874 432 221 33557888999998864 554322222222222238999998
Q ss_pred ccCcccceeccccccccCccccceeeecccceeecccCC
Q 020456 202 ENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLP 240 (326)
Q Consensus 202 ~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 240 (326)
.+|.- +..... .....+...++|++|++.+++
T Consensus 219 s~N~i-~~~g~~------~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 219 AYNGA-GDTAAL------ALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSSCC-CHHHHH------HHHHHHHHCSSCCEEECTTSS
T ss_pred CCCCC-CHHHHH------HHHHHHHhCCCCCEEeccCCC
Confidence 87753 221100 011112244788999998875
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.94 E-value=0.0039 Score=55.50 Aligned_cols=83 Identities=12% Similarity=0.066 Sum_probs=43.4
Q ss_pred CCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC
Q 020456 194 KPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ 273 (326)
Q Consensus 194 ~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~ 273 (326)
+|+.|++ .+.+.+..+.+.. ...+++|+.|+|.+. .++.++..... .+++|++|++++ ..++.+|.
T Consensus 32 ~L~~L~l-~~~n~l~~~~~~~----------~~~l~~L~~L~l~~N-~l~~~~~~~~~-~l~~L~~L~l~~-N~l~~~~~ 97 (347)
T 2ifg_A 32 NLTELYI-ENQQHLQHLELRD----------LRGLGELRNLTIVKS-GLRFVAPDAFH-FTPRLSRLNLSF-NALESLSW 97 (347)
T ss_dssp CCSEEEC-CSCSSCCEECGGG----------SCSCCCCSEEECCSS-CCCEECTTGGG-SCSCCCEEECCS-SCCSCCCS
T ss_pred CeeEEEc-cCCCCCCCcChhH----------hccccCCCEEECCCC-ccceeCHHHhc-CCcCCCEEeCCC-CccceeCH
Confidence 5666665 5444454443221 234456666666653 45555443322 566666666644 34555655
Q ss_pred CCCCCCCccEEEecccc
Q 020456 274 GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 274 ~~~~~~~L~~L~l~~c~ 290 (326)
.......|++|++.+++
T Consensus 98 ~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTTCSCCCCEEECCSSC
T ss_pred HHcccCCceEEEeeCCC
Confidence 43333337777776653
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.94 E-value=0.065 Score=48.50 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=29.9
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEeccc
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEE 289 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c 289 (326)
.+|+.+.+. .+++.+..... ..|.+|+.+.+.. .++.+.. +...|++|+++.+...
T Consensus 320 ~~L~~i~lp--~~v~~I~~~aF-~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 320 TSLVSIDLP--YLVEEIGKRSF-RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCCEECCC--TTCCEECTTTT-TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCEEEeC--CcccEEhHHhc-cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC
Confidence 344444442 12444443332 2567777776633 2555554 4446778888877543
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.66 E-value=0.0057 Score=54.38 Aligned_cols=85 Identities=18% Similarity=0.148 Sum_probs=56.3
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccc
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFD 215 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~ 215 (326)
+++|+.|+|++...++.++.. .+..+++|+.|+++++ ++..+++.. +..+. +|++|++ .+. .+..+....
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~--~~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~---~L~~L~l-~~N-~l~~~~~~~- 99 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELR--DLRGLGELRNLTIVKS-GLRFVAPDA-FHFTP---RLSRLNL-SFN-ALESLSWKT- 99 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGG--GSCSCCCCSEEECCSS-CCCEECTTG-GGSCS---CCCEEEC-CSS-CCSCCCSTT-
T ss_pred CCCeeEEEccCCCCCCCcChh--HhccccCCCEEECCCC-ccceeCHHH-hcCCc---CCCEEeC-CCC-ccceeCHHH-
Confidence 357899999877778877642 4677899999999885 677774433 33455 8999998 664 455443221
Q ss_pred cccCccccceeeecccceeecccCC
Q 020456 216 EKVGEEVKGCIVFERMNYLTLDCLP 240 (326)
Q Consensus 216 ~~~~~~~~~~~~l~~L~~L~l~~c~ 240 (326)
... .+|+.|++.+.+
T Consensus 100 ---------~~~-~~L~~l~l~~N~ 114 (347)
T 2ifg_A 100 ---------VQG-LSLQELVLSGNP 114 (347)
T ss_dssp ---------TCS-CCCCEEECCSSC
T ss_pred ---------ccc-CCceEEEeeCCC
Confidence 111 238888887743
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.63 E-value=0.2 Score=45.18 Aligned_cols=56 Identities=11% Similarity=0.222 Sum_probs=34.7
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEeccc
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEE 289 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c 289 (326)
.+|+.+.|.. +++.+...... .|.+|+.+.+-. .++.+.. ++..|++|+.+.+.+.
T Consensus 311 ~~L~~i~lp~--~v~~I~~~aF~-~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 311 ISLKSIDIPE--GITQILDDAFA-GCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTCCEEECCT--TCCEECTTTTT-TCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCcCEEEeCC--cccEehHhHhh-CCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 4566665542 35555443332 678888888842 3555554 4457889999888764
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.48 E-value=0.036 Score=50.21 Aligned_cols=52 Identities=12% Similarity=0.221 Sum_probs=31.8
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEE
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKV 284 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L 284 (326)
+.+|+.+.+.. +++.+...... .|++|+++.+.. .++........+++|+.+
T Consensus 342 c~~L~~i~lp~--~l~~I~~~aF~-~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 342 CTSLSNINFPL--SLRKIGANAFQ-GCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCT--TCCEECTTTBT-TCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred CCCCCEEEECc--cccEehHHHhh-CCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 35666666642 35566554433 789999998854 233333455567888765
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.22 E-value=0.0021 Score=52.00 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=21.3
Q ss_pred cCCcccEEEe--ccCCcccc-----ccCCCCCCCCccEEEeccc
Q 020456 253 EFPSLEQVVV--RQCPKMKI-----FSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 253 ~~~~L~~L~i--~~c~~l~~-----l~~~~~~~~~L~~L~l~~c 289 (326)
..++|++|++ .++ .+.. +...+...++|++|++++|
T Consensus 119 ~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 119 SNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred hCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3456777777 333 2322 3334444678899998877
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.58 E-value=0.017 Score=46.56 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=34.0
Q ss_pred cccCCCccEEEcccCCCccc-----ccccCCCCCCCCCCccEEEEecCCCCCcCCch---hHHhhCCCCCEEEEccCc
Q 020456 45 MIGFCDIEYLQLSDFPCLKE-----IWHGQALPVSFFNNLEELEVDDCTNMSSAIPA---NLLRCLNNLRCLEVRNCD 114 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~-----~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~ 114 (326)
+...++|++|++.++..+.. +.... ...++|++|++++|. +.+.... ..+...++|++|++++|.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L----~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEAL----KTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHH----TTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHH----HhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 33467788888877633332 11111 234677777777764 4332111 123445667777666653
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.46 E-value=2.5 Score=37.83 Aligned_cols=103 Identities=10% Similarity=0.126 Sum_probs=50.6
Q ss_pred cccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCC
Q 020456 161 IEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLP 240 (326)
Q Consensus 161 ~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 240 (326)
..+++|+++.+.. .++.+ +...+..+. +|+++.| .. +++.+.... -..+.+|+.+.|..
T Consensus 285 ~~c~~L~~i~l~~--~i~~I-~~~aF~~c~---~L~~i~l-p~--~v~~I~~~a----------F~~C~~L~~i~ip~-- 343 (394)
T 4gt6_A 285 MNCPALQDIEFSS--RITEL-PESVFAGCI---SLKSIDI-PE--GITQILDDA----------FAGCEQLERIAIPS-- 343 (394)
T ss_dssp TTCTTCCEEECCT--TCCEE-CTTTTTTCT---TCCEEEC-CT--TCCEECTTT----------TTTCTTCCEEEECT--
T ss_pred ccccccccccCCC--ccccc-CceeecCCC---CcCEEEe-CC--cccEehHhH----------hhCCCCCCEEEECc--
Confidence 3456666666642 44444 233344555 7777777 43 244432221 11345677777642
Q ss_pred CcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecc
Q 020456 241 SLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTE 288 (326)
Q Consensus 241 ~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~ 288 (326)
+++.+..... ..|++|+.+.+.+.... . .....+..|+.+.+..
T Consensus 344 sv~~I~~~aF-~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 344 SVTKIPESAF-SNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCCBCCGGGG-TTCTTCCEEEESSCHHH--H-HTCBCCCCC-------
T ss_pred ccCEEhHhHh-hCCCCCCEEEECCceee--h-hhhhccCCCCEEEeCC
Confidence 3555544333 37889999988653211 1 2334567777777643
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.10 E-value=3 Score=37.00 Aligned_cols=54 Identities=9% Similarity=0.207 Sum_probs=26.8
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEe
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNV 286 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l 286 (326)
.+|+.+.+.+ ..++.+...... .|.+|+.+.+-+ .++.+.. +...|.+|+++.+
T Consensus 286 ~~L~~i~l~~-~~i~~I~~~aF~-~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 286 SNLTKVVMDN-SAIETLEPRVFM-DCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTCCEEEECC-TTCCEECTTTTT-TCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccc-cccceehhhhhc-CCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 4455554432 123444333322 566777776632 3444444 3345666766665
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=91.61 E-value=0.26 Score=42.19 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=16.7
Q ss_pred CCCccEEEEecCCCCCcCCc-hhHHhhCCCCCEEEEcc
Q 020456 76 FNNLEELEVDDCTNMSSAIP-ANLLRCLNNLRCLEVRN 112 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~ 112 (326)
+++|+.|++++. +++.+.. ...++.+++|+.|++++
T Consensus 169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC
Confidence 455555555554 2333221 11234555555555554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=91.14 E-value=0.24 Score=42.37 Aligned_cols=91 Identities=20% Similarity=0.127 Sum_probs=52.0
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCC--CCCEEEEccCcCcceeccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLN--NLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~--~L~~L~l~~c~~l~~l~~~~~ 124 (326)
.+++|++|++++.. +..+..-. -....+++|+.|++++. ++++... +..+. +|++|.+.+++--..++....
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~-~~~~~l~~L~~L~Ls~N-~i~~~~~---l~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMS-SIVQKAPNLKILNLSGN-ELKSERE---LDKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGT-THHHHSTTCCEEECTTS-CCCSGGG---GGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred hCCCCCEEECCCCC-CCCCccch-hHHhhCCCCCEEECCCC-ccCCchh---hhhcccCCcceEEccCCcCccccCcchh
Confidence 48899999998654 33221100 00136899999999887 4555422 33444 899999998774322211000
Q ss_pred cccccCcCCCCCCCccEEecCC
Q 020456 125 LNADKEHISPLFPKLSELRLID 146 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~ 146 (326)
. ...+...||+|+.|+=..
T Consensus 242 y---~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 242 Y---ISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp H---HHHHHHHCTTCCEESSCB
T ss_pred H---HHHHHHHCcccCeECCcC
Confidence 0 011223578998887543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=82.94 E-value=24 Score=30.96 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=34.0
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEecc
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTE 288 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~ 288 (326)
.+|+.+.+. .+++.+...... .|++|+++.+.+ ..++.++. ....|.+|+++.+..
T Consensus 263 ~~l~~i~l~--~~i~~i~~~aF~-~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 263 TALKTLNFY--AKVKTVPYLLCS-GCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTCCEEEEC--CCCSEECTTTTT-TCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred ehhcccccc--ccceeccccccc-cccccccccccc-cccceehhhhhcCCCCCCEEEcCc
Confidence 345555443 234455443332 788999998843 34555655 455788999998843
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=67.89 E-value=5.7 Score=29.46 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=25.5
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCc
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCD 114 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 114 (326)
++|++|+|++. +++.+.. ..+..+++|+.|+|.+++
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~-~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPP-GLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTS-CCSSCCT-TTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCC-cCCccCh-hhhhhccccCEEEecCCC
Confidence 57888888886 4655544 346778888888887754
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=43.01 E-value=22 Score=26.19 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=12.2
Q ss_pred cceeecccCCCcceecCCCccccCCcccEEEec
Q 020456 231 MNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVR 263 (326)
Q Consensus 231 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~ 263 (326)
|++|+|.+ ..++.++..... .+++|++|.+.
T Consensus 33 l~~L~Ls~-N~l~~l~~~~f~-~l~~L~~L~L~ 63 (130)
T 3rfe_A 33 TTELVLTG-NNLTALPPGLLD-ALPALRTAHLG 63 (130)
T ss_dssp CSEEECTT-SCCSSCCTTTGG-GCTTCCEEECC
T ss_pred CCEEECCC-CcCCccChhhhh-hccccCEEEec
Confidence 44444443 333333333221 34444444444
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=38.93 E-value=7.2 Score=31.43 Aligned_cols=36 Identities=6% Similarity=0.140 Sum_probs=15.6
Q ss_pred ccccEEeEecCCCCCccCcchhhhccCCCCCCceEEe
Q 020456 164 LMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTL 200 (326)
Q Consensus 164 ~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i 200 (326)
+.|++|++++| .+.+.....++..+..+..|++|++
T Consensus 70 ~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 70 KHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNV 105 (197)
T ss_dssp SCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred CCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEec
Confidence 45555555554 3333322233322222235555555
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=25.50 E-value=24 Score=28.31 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=64.8
Q ss_pred cccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCc
Q 020456 163 MLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSL 242 (326)
Q Consensus 163 ~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 242 (326)
-+.|++|+++++..+.+.....++..+..+..|+.|++ .+|.--+.-... ....+..-+.|++|+|.+.. +
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L-~~n~igd~ga~a-------lA~aL~~N~tL~~L~L~~N~-I 110 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSL-ANTAISDSEARG-------LIELIETSPSLRVLNVESNF-L 110 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEEC-TTSCCBHHHHTT-------HHHHHHHCSSCCEEECCSSB-C
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEc-cCCCCChHHHHH-------HHHHHhcCCccCeEecCCCc-C
Confidence 46788999976556665433444444445558999999 877633211100 11112233679999988743 2
Q ss_pred ceecCCC---ccccCCcccEEEeccCC--cccc-----ccCCCCCCCCccEEEeccc
Q 020456 243 TSFCLGN---YALEFPSLEQVVVRQCP--KMKI-----FSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 243 ~~~~~~~---~~~~~~~L~~L~i~~c~--~l~~-----l~~~~~~~~~L~~L~l~~c 289 (326)
..-.... .-..-..|++|.+.++. .+.. +...+..=+.|++|+++.+
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2111000 00123579999997643 2221 3233334468889988654
Done!