Your job contains 1 sequence.
>020460
MSSHMLNGQKSSATTSNSNSNSNNNNNNNKASSYYPPPTAKYEDIAQSSDLFWATLEAFH
KSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFV
LRKYYLSLLYHFEQVYYFRREAPSSSMPDAVSGSSLDNGSASPEEGSTINQLGSQGSSKL
QIGCSVSGVIDGKFDNGYLVTVNLGSEQLKGVLYHIPHAHNVSQSSNNSAAPTHRRRKRS
RLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQE
KGLKDKERYKSEMLEYRSSYDSTVQQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020460
(326 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2088160 - symbol:AT3G13350 species:3702 "Arabi... 775 5.5e-77 1
TAIR|locus:2010587 - symbol:AT1G04880 species:3702 "Arabi... 432 6.1e-64 2
TAIR|locus:2199824 - symbol:AT1G76110 species:3702 "Arabi... 583 1.2e-56 1
TAIR|locus:2020517 - symbol:AT1G55650 species:3702 "Arabi... 442 1.1e-41 1
UNIPROTKB|E1C9H0 - symbol:ARID2 "Uncharacterized protein"... 220 1.6e-17 2
UNIPROTKB|Q68CP9 - symbol:ARID2 "AT-rich interactive doma... 211 2.1e-15 2
UNIPROTKB|K7EJ04 - symbol:ARID3A "AT-rich interactive dom... 154 4.2e-14 2
ZFIN|ZDB-GENE-030131-6311 - symbol:arid2 "AT rich interac... 200 3.5e-13 1
UNIPROTKB|E2RFL8 - symbol:ARID2 "Uncharacterized protein"... 169 2.7e-09 1
UNIPROTKB|Q99856 - symbol:ARID3A "AT-rich interactive dom... 154 3.7e-09 2
UNIPROTKB|H3BQ92 - symbol:ARID3B "AT-rich interactive dom... 138 5.4e-09 1
UNIPROTKB|I3L967 - symbol:ARID3B "Uncharacterized protein... 154 1.1e-08 1
ZFIN|ZDB-GENE-070209-182 - symbol:arid3b "AT rich interac... 150 2.1e-08 2
UNIPROTKB|G3MWU0 - symbol:ARID3C "Uncharacterized protein... 152 2.6e-08 1
UNIPROTKB|I3L5S4 - symbol:ARID3C "Uncharacterized protein... 152 2.6e-08 1
MGI|MGI:3650624 - symbol:Arid3c "AT rich interactive doma... 152 2.9e-08 1
RGD|1560943 - symbol:Arid3c "AT rich interactive domain 3... 152 2.9e-08 1
UNIPROTKB|E2RGA0 - symbol:ARID3C "Uncharacterized protein... 152 3.0e-08 1
UNIPROTKB|A6NKF2 - symbol:ARID3C "AT-rich interactive dom... 152 3.0e-08 1
UNIPROTKB|F1MGP2 - symbol:ARID3C "Uncharacterized protein... 152 3.0e-08 1
UNIPROTKB|F1SEC1 - symbol:ARID3C "Uncharacterized protein... 152 3.0e-08 1
UNIPROTKB|E1BGZ3 - symbol:ARID3A "Uncharacterized protein... 154 3.1e-08 2
UNIPROTKB|E1BIF8 - symbol:E1BIF8 "Uncharacterized protein... 138 3.3e-08 1
UNIPROTKB|F1PDC9 - symbol:ARID3A "Uncharacterized protein... 154 3.4e-08 1
UNIPROTKB|E1BIU3 - symbol:LOC532409 "Uncharacterized prot... 135 3.5e-08 1
UNIPROTKB|F1S6T2 - symbol:ARID3A "Uncharacterized protein... 154 4.0e-08 2
MGI|MGI:1328360 - symbol:Arid3a "AT rich interactive doma... 154 5.2e-08 2
POMBASE|SPAC57A10.09c - symbol:nhp6 "High-mobility group ... 129 5.5e-08 1
RGD|1564407 - symbol:Hmgb3 "high mobility group box 3" sp... 137 9.9e-08 1
UNIPROTKB|P36194 - symbol:HMGB1 "High mobility group prot... 137 1.1e-07 1
UNIPROTKB|E7ES08 - symbol:HMGB3 "High mobility group prot... 133 1.4e-07 1
UNIPROTKB|E1BI80 - symbol:ARID3B "Uncharacterized protein... 148 1.5e-07 1
UNIPROTKB|F1NL47 - symbol:ARID3B "Uncharacterized protein... 148 1.5e-07 1
UNIPROTKB|E2RFI5 - symbol:ARID3B "Uncharacterized protein... 148 1.5e-07 1
RGD|1306335 - symbol:Arid3b "AT rich interactive domain 3... 148 1.5e-07 1
MGI|MGI:1930768 - symbol:Arid3b "AT rich interactive doma... 148 1.5e-07 1
UNIPROTKB|J9NVS3 - symbol:HMGB3 "Uncharacterized protein"... 138 1.7e-07 1
UNIPROTKB|Q32L31 - symbol:HMGB3 "High mobility group prot... 135 2.0e-07 1
UNIPROTKB|Q8IVW6 - symbol:ARID3B "AT-rich interactive dom... 148 2.2e-07 2
UNIPROTKB|F1RQ19 - symbol:LOC100517745 "Uncharacterized p... 135 2.2e-07 1
UNIPROTKB|F1MF42 - symbol:LOC618297 "Uncharacterized prot... 128 2.3e-07 2
UNIPROTKB|E7EQU1 - symbol:HMGB3 "High mobility group prot... 133 2.4e-07 1
UNIPROTKB|F1NAK8 - symbol:LOC100858693 "Uncharacterized p... 140 3.7e-07 2
UNIPROTKB|O15347 - symbol:HMGB3 "High mobility group prot... 133 3.7e-07 1
MGI|MGI:1098219 - symbol:Hmgb3 "high mobility group box 3... 132 5.4e-07 1
UNIPROTKB|P40673 - symbol:HMGB2 "High mobility group prot... 128 5.7e-07 2
UNIPROTKB|P26583 - symbol:HMGB2 "High mobility group prot... 128 5.7e-07 2
UNIPROTKB|E2QY30 - symbol:HMGB2 "Uncharacterized protein"... 128 6.0e-07 2
UNIPROTKB|P17741 - symbol:HMGB2 "High mobility group prot... 128 6.0e-07 2
GENEDB_PFALCIPARUM|PFL0145c - symbol:PFL0145c "high mobil... 119 7.0e-07 1
UNIPROTKB|Q8I616 - symbol:HMGB1 "High mobility group prot... 119 7.0e-07 1
UNIPROTKB|P40618 - symbol:HMGB3 "High mobility group prot... 131 7.9e-07 1
RGD|1561694 - symbol:RGD1561694 "similar to High mobility... 131 1.0e-06 1
RGD|1564519 - symbol:RGD1564519 "similar to High mobility... 131 1.1e-06 1
RGD|69291 - symbol:Hmgb2 "high mobility group box 2" spec... 131 1.1e-06 1
UNIPROTKB|P07156 - symbol:HMGB1 "High mobility group prot... 126 1.1e-06 1
RGD|1589841 - symbol:LOC690940 "similar to High mobility ... 125 1.5e-06 2
RGD|1593466 - symbol:LOC689398 "similar to High mobility ... 125 1.5e-06 2
UNIPROTKB|D4A9T3 - symbol:D4A9T3 "Uncharacterized protein... 126 1.5e-06 1
RGD|1559962 - symbol:RGD1559962 "similar to High mobility... 129 1.9e-06 1
UNIPROTKB|E9PES6 - symbol:HMGB3 "High mobility group prot... 115 1.9e-06 1
SGD|S000006256 - symbol:NHP6A "High-mobility group (HMG) ... 115 1.9e-06 1
ZFIN|ZDB-GENE-030131-341 - symbol:hmgb1a "high-mobility g... 122 2.1e-06 2
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer... 114 2.5e-06 1
WB|WBGene00000476 - symbol:cfi-1 species:6239 "Caenorhabd... 136 2.6e-06 1
UNIPROTKB|F1NPU8 - symbol:HMGB2 "High mobility group prot... 127 3.1e-06 1
ZFIN|ZDB-GENE-080220-35 - symbol:arid1aa "AT rich interac... 143 3.2e-06 1
RGD|1585821 - symbol:LOC680968 "similar to High mobility ... 126 5.0e-06 1
RGD|1596979 - symbol:LOC678705 "hypothetical protein LOC6... 126 5.1e-06 1
FB|FBgn0004795 - symbol:retn "retained" species:7227 "Dro... 137 5.1e-06 1
UNIPROTKB|P10103 - symbol:HMGB1 "High mobility group prot... 126 5.2e-06 1
UNIPROTKB|Q6YKA4 - symbol:HMGB1 "High mobility group prot... 126 5.2e-06 1
UNIPROTKB|P09429 - symbol:HMGB1 "High mobility group prot... 126 5.2e-06 1
UNIPROTKB|F2Z594 - symbol:HMGB1 "High mobility group prot... 126 5.2e-06 1
RGD|1591683 - symbol:LOC681718 "similar to High mobility ... 126 5.2e-06 1
RGD|2802 - symbol:Hmgb1 "high mobility group box 1" speci... 126 5.2e-06 1
GENEDB_PFALCIPARUM|MAL8P1.72 - symbol:MAL8P1.72 "high mob... 111 5.4e-06 1
UNIPROTKB|Q8IB14 - symbol:PfHMGB2 "High mobility group pr... 111 5.4e-06 1
UNIPROTKB|P26584 - symbol:HMGB2 "High mobility group prot... 125 5.6e-06 1
UNIPROTKB|E1BMK2 - symbol:E1BMK2 "Uncharacterized protein... 125 6.8e-06 1
RGD|1586285 - symbol:LOC691220 "hypothetical protein LOC6... 124 8.8e-06 1
RGD|1588313 - symbol:LOC679451 "similar to High mobility ... 124 8.8e-06 1
UNIPROTKB|F1N927 - symbol:HMGB1 "High mobility group prot... 123 1.2e-05 1
UNIPROTKB|H0Y3S9 - symbol:ARID1B "AT-rich interactive dom... 126 1.2e-05 1
UNIPROTKB|J9NTN3 - symbol:ARID1A "Uncharacterized protein... 137 1.2e-05 1
UNIPROTKB|Q9YH06 - symbol:HMG1 "High mobility group 1 pro... 123 1.2e-05 1
UNIPROTKB|F1N1P2 - symbol:F1N1P2 "Uncharacterized protein... 121 1.4e-05 1
SGD|S000002157 - symbol:NHP6B "High-mobility group (HMG) ... 107 1.5e-05 1
UNIPROTKB|E2RSH9 - symbol:ARID1A "Uncharacterized protein... 137 1.5e-05 1
UNIPROTKB|P0C6E5 - symbol:P0C6E5 "Putative high mobility ... 119 1.8e-05 1
UNIPROTKB|P12682 - symbol:HMGB1 "High mobility group prot... 121 2.1e-05 1
RGD|1589528 - symbol:LOC679344 "similar to High mobility ... 121 2.1e-05 1
RGD|1592627 - symbol:LOC685520 "similar to High mobility ... 121 2.1e-05 1
UNIPROTKB|E1B925 - symbol:ARID1A "Uncharacterized protein... 135 2.3e-05 1
MGI|MGI:1935147 - symbol:Arid1a "AT rich interactive doma... 135 2.5e-05 1
UNIPROTKB|O14497 - symbol:ARID1A "AT-rich interactive dom... 135 2.5e-05 1
RGD|1310500 - symbol:Arid1a "AT rich interactive domain 1... 135 2.5e-05 1
UNIPROTKB|Q5T7C4 - symbol:HMGB1 "High mobility group prot... 112 2.5e-05 1
MGI|MGI:96157 - symbol:Hmgb2 "high mobility group box 2" ... 119 3.4e-05 1
RGD|1563668 - symbol:RGD1563668 "similar to High mobility... 119 3.4e-05 1
WARNING: Descriptions of 37 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2088160 [details] [associations]
symbol:AT3G13350 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006333 "chromatin assembly or disassembly"
evidence=RCA] InterPro:IPR009071 InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 Pfam:PF00505 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Gene3D:1.10.150.60 SUPFAM:SSF46774 eggNOG:NOG327790
EMBL:AB024034 EMBL:AF361582 EMBL:AY133557 EMBL:AY087770
IPI:IPI00541454 RefSeq:NP_566454.1 UniGene:At.27664 HSSP:P07155
ProteinModelPortal:Q9LTT3 SMR:Q9LTT3 IntAct:Q9LTT3 PaxDb:Q9LTT3
PRIDE:Q9LTT3 EnsemblPlants:AT3G13350.1 GeneID:820535
KEGG:ath:AT3G13350 TAIR:At3g13350 HOGENOM:HOG000243289
InParanoid:Q9LTT3 OMA:GVLYHIP PhylomeDB:Q9LTT3
ProtClustDB:CLSN2681954 Genevestigator:Q9LTT3 Uniprot:Q9LTT3
Length = 319
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 161/289 (55%), Positives = 200/289 (69%)
Query: 40 AKYEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDR 99
AKY+D+ ++S LFW L AF KVPTVGG LDLHRLF+EVTSRGG+ +V++DR
Sbjct: 34 AKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDR 93
Query: 100 RWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRREAPSSSMPDAVSG-SSLDN 158
+WKEV+ F+FPTTITSASFVLRKYYL L+ E VYY E P SS+ SL N
Sbjct: 94 KWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYL--EKPVSSLQSTDEALKSLAN 151
Query: 159 GSASPEEGSTINQLGSQGSSKLQIGCSVSGVIDGKFDNGYLVTVNLGSEQLKGVLYHIPH 218
S +PEEG I++ Q+G V G IDGKFD+GYLVT+ LGS++LKGVLYHIP
Sbjct: 152 ESPNPEEG--IDEP--------QVGYEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHIPQ 201
Query: 219 AHNVSQSSNN--SA---APTHXXXXXXXXXXXDPSRPKSNRSGYNFFFAEHYARLKPHYY 273
+ SQ + SA + D +PK +RSGYNFFFAE YARLKP Y+
Sbjct: 202 TPSQSQQTMETPSAIVQSSQRRHRKKSKLAVVDTQKPKCHRSGYNFFFAEQYARLKPEYH 261
Query: 274 GQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSYDS 322
GQE++I+KKIG +WSNLTE+EKQVYQ+KG+KD ERY+ EMLEY+SS++S
Sbjct: 262 GQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYKSSHES 310
>TAIR|locus:2010587 [details] [associations]
symbol:AT1G04880 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=RCA] InterPro:IPR009071 InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 Pfam:PF00505
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC004809 Gene3D:1.10.150.60
SUPFAM:SSF46774 HSSP:P07155 HOGENOM:HOG000243289
ProtClustDB:CLSN2681954 EMBL:BT020255 EMBL:BT020442 EMBL:AB493433
IPI:IPI00523331 PIR:B86182 RefSeq:NP_171980.1 UniGene:At.42427
ProteinModelPortal:Q9MAT6 SMR:Q9MAT6 PaxDb:Q9MAT6 PRIDE:Q9MAT6
EnsemblPlants:AT1G04880.1 GeneID:839388 KEGG:ath:AT1G04880
TAIR:At1g04880 eggNOG:NOG236327 InParanoid:Q9MAT6 OMA:EMEDYRE
PhylomeDB:Q9MAT6 Genevestigator:Q9MAT6 Uniprot:Q9MAT6
Length = 448
Score = 432 (157.1 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
Identities = 94/197 (47%), Positives = 119/197 (60%)
Query: 38 PTAKYEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIR 97
P A YE + LF +LE H G KF VP +GG+ LDLH+LFVEVTSRGG+ K++
Sbjct: 21 PEATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILN 80
Query: 98 DRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRR--EAPSSSMPDAVSGSS 155
+RRWKEV F FP T T+AS+VLRKYY SLL ++EQ+Y+FR + P SM +
Sbjct: 81 ERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYFFRSNGQIPPDSMQSPSARPC 140
Query: 156 LDNGSASPEEG---------STINQLGSQGSSKLQIGCSVSGVIDGKFDNGYLVTVNLGS 206
G+ P + IN G S G +V GVIDGKF++GYLVTV +GS
Sbjct: 141 FIQGAIRPSQELQALTFTPQPKINTAEFLGGSLA--GSNVVGVIDGKFESGYLVTVTIGS 198
Query: 207 EQLKGVLYHIPHAHNVS 223
EQLKGVLY + + VS
Sbjct: 199 EQLKGVLYQLLPQNTVS 215
Score = 238 (88.8 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
Identities = 43/72 (59%), Positives = 56/72 (77%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKD 305
DP PK NRSGYNFFFAE +ARLKP + G+++ IS+ IG LW+ L E EK +YQ K ++D
Sbjct: 259 DPDHPKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELWNKLNEDEKLIYQGKAMED 318
Query: 306 KERYKSEMLEYR 317
KERY++EM +YR
Sbjct: 319 KERYRTEMEDYR 330
>TAIR|locus:2199824 [details] [associations]
symbol:AT1G76110 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA;TAS]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006333 "chromatin
assembly or disassembly" evidence=RCA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009617 "response to
bacterium" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0010310 "regulation of hydrogen peroxide metabolic process"
evidence=RCA] [GO:0010363 "regulation of plant-type hypersensitive
response" evidence=RCA] [GO:0030154 "cell differentiation"
evidence=RCA] [GO:0031348 "negative regulation of defense response"
evidence=RCA] [GO:0035304 "regulation of protein dephosphorylation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR009071 InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 Pfam:PF00505
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC009978 Gene3D:1.10.150.60
SUPFAM:SSF46774 eggNOG:NOG327790 HOGENOM:HOG000243289
ProtClustDB:CLSN2681954 HSSP:P11632 EMBL:AY099630 EMBL:BT008823
IPI:IPI00540147 PIR:B96789 RefSeq:NP_177738.1 UniGene:At.43665
ProteinModelPortal:Q9SGS2 SMR:Q9SGS2 IntAct:Q9SGS2 PaxDb:Q9SGS2
PRIDE:Q9SGS2 EnsemblPlants:AT1G76110.1 GeneID:843943
KEGG:ath:AT1G76110 TAIR:At1g76110 InParanoid:Q9SGS2 OMA:FMIPVIG
PhylomeDB:Q9SGS2 Genevestigator:Q9SGS2 Uniprot:Q9SGS2
Length = 338
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 132/299 (44%), Positives = 169/299 (56%)
Query: 35 YPPPTAKYEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGK 94
YP P A +E + + S +FW TL FH KF +P +GGK LDLH L+VEVT RGG K
Sbjct: 27 YPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGYEK 86
Query: 95 VIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRREAPSSSMPDAV--S 152
V+ +++W+EV VF F T TSASFVLRK+YL+LL+H+EQV+ F P P A +
Sbjct: 87 VVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLH-PIATFHA 145
Query: 153 GSSLDNGSASPE-EGSTINQLGSQGSSKLQIGCSVSGVIDGKFDNGYLVTVNLGSEQLKG 211
S A E +I + S+ + G I+GKFD GYLV V LGSE L G
Sbjct: 146 NPSTSKEMALVEYTPPSIRYHNTHPPSQGSSSFTAIGTIEGKFDCGYLVKVKLGSEILNG 205
Query: 212 VLYHIPHAHNVSQSS---NNSAAP--------THXXXXXXXXXXXDPSRPKSNRSGYNFF 260
VLYH S + NN+ P DP+ PK NRSGYNFF
Sbjct: 206 VLYHSAQPGPSSSPTAVLNNAVVPYVETGRRRRRLGKRRRSRRREDPNYPKPNRSGYNFF 265
Query: 261 FAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319
FAE + +LK Y +E+ +K IG WSNL+ E+ VYQ+ GLKDKERY+ E+ EYR +
Sbjct: 266 FAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNEYRET 324
>TAIR|locus:2020517 [details] [associations]
symbol:AT1G55650 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR009071 InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011
SMART:SM00501 Pfam:PF00505 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:AC002328
IPI:IPI00543464 PIR:H96598 RefSeq:NP_175961.1 UniGene:At.52216
ProteinModelPortal:Q9LG02 SMR:Q9LG02 PRIDE:Q9LG02
EnsemblPlants:AT1G55650.1 GeneID:842014 KEGG:ath:AT1G55650
TAIR:At1g55650 InParanoid:Q9LG02 Genevestigator:Q9LG02
Uniprot:Q9LG02
Length = 337
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 93/194 (47%), Positives = 131/194 (67%)
Query: 42 YEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRW 101
Y+DI ++ +LFW L FH+S KFK+P VGGK+LDLHRLF EVTSRGGL KVI+DRR
Sbjct: 30 YQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRC 89
Query: 102 KEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRREAPSSSMPDAVSGSSLDNGSA 161
KEV+ FNF TTIT+++FVLRK YL +L+ FE +YYF +AP S+ + L
Sbjct: 90 KEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYF--QAPLSTFWEKEKALKL----- 142
Query: 162 SPEEGSTINQLGSQGSSKLQIGCSVSGVIDGKFDNGYLVTVNLGSEQLKGVLYHI-PHAH 220
E+ + N+ + S +L+ G ++G+IDGKF++GYL++ +GSE+LKG+LYHI P
Sbjct: 143 LIEKSA--NR--DKDSQELKPGTVITGIIDGKFESGYLISTKVGSEKLKGMLYHISPETK 198
Query: 221 NVSQSSNNSAAPTH 234
+ + +S +H
Sbjct: 199 RGKKKAKSSQGDSH 212
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 61/151 (40%), Positives = 94/151 (62%)
Query: 177 SSKLQIGCSVSGVIDGKFDNGYLVTVNLGSEQLKGVLYHI-PHAHNVSQSSNNSAAPTHX 235
S +L+ G ++G+IDGKF++GYL++ +GSE+LKG+LYHI P + + +S +H
Sbjct: 154 SQELKPGTVITGIIDGKFESGYLISTKVGSEKLKGMLYHISPETKRGKKKAKSSQGDSHK 213
Query: 236 XXXXXXXXXXDPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEK 295
P PK R+GYNFF AE R+K GQ+ + K G +W+NL+E+++
Sbjct: 214 -----------P--PKRQRTGYNFFVAEQSVRIKAENAGQKVSSPKNFGNMWTNLSESDR 260
Query: 296 QVYQEKGLKDKERYKSEMLEYRSSYDSTVQQ 326
+VY EK +D +RYK E+L+YRS +S V +
Sbjct: 261 KVYYEKSREDGKRYKMEILQYRSLMESRVAE 291
>UNIPROTKB|E1C9H0 [details] [associations]
symbol:ARID2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR001606 InterPro:IPR003150 InterPro:IPR007087
InterPro:IPR015880 Pfam:PF01388 Pfam:PF02257 PROSITE:PS00028
PROSITE:PS51011 PROSITE:PS51526 SMART:SM00355 SMART:SM00501
GO:GO:0006355 GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0006337 Gene3D:1.10.150.60
SUPFAM:SSF46774 OMA:IQNSIPQ GeneTree:ENSGT00390000016138
EMBL:AADN02010001 EMBL:AADN02010002 EMBL:AADN02010003
IPI:IPI00593469 Ensembl:ENSGALT00000015735 Uniprot:E1C9H0
Length = 1831
Score = 220 (82.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 43/91 (47%), Positives = 58/91 (63%)
Query: 52 FWATLEAFHKSFGDKFK-VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 110
F L FH S G FK +P VGGK LDLH L+ VT+ GG GKV +W E+V FNF
Sbjct: 19 FLDELRQFHHSRGSPFKKIPVVGGKELDLHALYTRVTTLGGFGKVSEKNQWGEIVEEFNF 78
Query: 111 PTTITSASFVLRKYYLSLLYHFEQVYYFRRE 141
P + ++A+F L++YYL L +E+V++F E
Sbjct: 79 PRSCSNAAFALKQYYLRYLEKYEKVHHFGEE 109
Score = 39 (18.8 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 195 DNGYLVTVNLGSEQLKGVLYHI 216
DNG L+ + E K ++ H+
Sbjct: 386 DNGVLICEYVDQESYKEIICHL 407
>UNIPROTKB|Q68CP9 [details] [associations]
symbol:ARID2 "AT-rich interactive domain-containing protein
2" species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006337 "nucleosome disassembly" evidence=IDA]
InterPro:IPR001606 InterPro:IPR003150 InterPro:IPR007087
InterPro:IPR015880 Pfam:PF01388 Pfam:PF02257 PROSITE:PS00028
PROSITE:PS50157 PROSITE:PS51011 PROSITE:PS51526 SMART:SM00355
SMART:SM00501 EMBL:DQ096628 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0016568 GO:GO:0006337
Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:AY727870 EMBL:AL832200
EMBL:BX537879 EMBL:CR749833 EMBL:AK027718 EMBL:AK127872
EMBL:BC090062 EMBL:AB046777 IPI:IPI00444237 IPI:IPI00470537
IPI:IPI00647133 RefSeq:NP_689854.2 UniGene:Hs.317304
ProteinModelPortal:Q68CP9 SMR:Q68CP9 DIP:DIP-33391N IntAct:Q68CP9
STRING:Q68CP9 PhosphoSite:Q68CP9 DMDM:73921721 PaxDb:Q68CP9
PRIDE:Q68CP9 DNASU:196528 Ensembl:ENST00000334344 GeneID:196528
KEGG:hsa:196528 UCSC:uc001ror.3 CTD:196528 GeneCards:GC12P046123
HGNC:HGNC:18037 MIM:609539 neXtProt:NX_Q68CP9 PharmGKB:PA134916396
eggNOG:NOG311317 HOVERGEN:HBG068777 InParanoid:Q68CP9 KO:K11765
OMA:IQNSIPQ OrthoDB:EOG49KFPP GenomeRNAi:196528 NextBio:89525
PMAP-CutDB:Q68CP9 ArrayExpress:Q68CP9 Bgee:Q68CP9
Genevestigator:Q68CP9 Uniprot:Q68CP9
Length = 1835
Score = 211 (79.3 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 44/103 (42%), Positives = 62/103 (60%)
Query: 37 PPTAKYEDIAQSSDLFWATLEAFHKSFGDKFK-VPTVGGKALDLHRLFVEVTSRGGLGKV 95
PP + + +A F L FH S G FK +P VGGK LDLH L+ VT+ GG KV
Sbjct: 9 PPDERRKGLA-----FLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKV 63
Query: 96 IRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYF 138
+W E+V FNFP + ++A+F L++YYL L +E+V++F
Sbjct: 64 SEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHF 106
Score = 39 (18.8 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 143 PSSSMPDAVSGSS 155
P+SS P SGSS
Sbjct: 1607 PNSSQPSPFSGSS 1619
Score = 39 (18.8 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 144 SSSMPDAVSGSSLDNGSASPEEGSTINQLGSQGSSK 179
S ++P+ + + + NG SP E + Q ++K
Sbjct: 1373 SKNIPNHKTSNHVGNGEISPMEPQGTLDITQQDTAK 1408
>UNIPROTKB|K7EJ04 [details] [associations]
symbol:ARID3A "AT-rich interactive domain-containing
protein 3A" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:AC005391 EMBL:AC005379
HGNC:HGNC:3031 InterPro:IPR023334 PROSITE:PS51486
Ensembl:ENST00000587532 Uniprot:K7EJ04
Length = 182
Score = 154 (59.3 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL L+V VT +GGL +VI + W+E+ N PT+ITSA+F LR Y+
Sbjct: 10 RIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMK 69
Query: 128 LLYHFE 133
LY +E
Sbjct: 70 YLYPYE 75
Score = 48 (22.0 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 143 PSSSMPDAVS--GSSLDNG-----SASPEEGSTINQLGSQGSSKLQIGCSVSGVI 190
P SS+ A S GSS+ ++ + S +N G+ GS+ + + ++G++
Sbjct: 125 PVSSLGLAASTNGSSITPAPKIKKASESRQDSAVNLTGTNGSNSISMSVEINGIM 179
>ZFIN|ZDB-GENE-030131-6311 [details] [associations]
symbol:arid2 "AT rich interactive domain 2 (ARID,
RFX-like)" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001606 InterPro:IPR003150 InterPro:IPR007087
InterPro:IPR015880 InterPro:IPR016024 Pfam:PF01388 Pfam:PF02257
PROSITE:PS00028 PROSITE:PS51011 PROSITE:PS51526 SMART:SM00355
SMART:SM00501 ZFIN:ZDB-GENE-030131-6311 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:CR847994 EMBL:AL929171
GeneTree:ENSGT00390000016138 IPI:IPI00933367
Ensembl:ENSDART00000113360 Uniprot:E7F3J3
Length = 1573
Score = 200 (75.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 43/91 (47%), Positives = 56/91 (61%)
Query: 52 FWATLEAFHKSFGDKFK-VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 110
F L FH S G FK VP VGGK LDL L+V V S GG KV +W E+V F F
Sbjct: 19 FLDELRQFHHSRGSPFKKVPVVGGKELDLGALYVRVVSLGGFAKVSDKNQWVELVEDFQF 78
Query: 111 PTTITSASFVLRKYYLSLLYHFEQVYYFRRE 141
P + ++A+FVL++YYL L +E+V++F E
Sbjct: 79 PRSCSNAAFVLKQYYLRYLEKYEKVHHFGEE 109
>UNIPROTKB|E2RFL8 [details] [associations]
symbol:ARID2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001606 InterPro:IPR003150
InterPro:IPR007087 InterPro:IPR015880 Pfam:PF01388 Pfam:PF02257
PROSITE:PS00028 PROSITE:PS51011 PROSITE:PS51526 SMART:SM00355
SMART:SM00501 GO:GO:0006355 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0006337
Gene3D:1.10.150.60 SUPFAM:SSF46774 OMA:IQNSIPQ
GeneTree:ENSGT00390000016138 EMBL:AAEX03015115 EMBL:AAEX03015116
Ensembl:ENSCAFT00000014865 Uniprot:E2RFL8
Length = 1836
Score = 169 (64.5 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 39/103 (37%), Positives = 56/103 (54%)
Query: 37 PPTAKYEDIAQSSDLFWATLEAFHKSFGDKFKV-PTVGGKALDLHRLFVEVTSRGGLGKV 95
PP + + +A F L FH S G ++ P VGG DLH L E GG KV
Sbjct: 9 PPDERRKGLA-----FLDELRQFHHSRGSPCQIIPAVGGNPPDLHGLKPESPPVGGFAKV 63
Query: 96 IRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYF 138
+W E+V FNFP + ++A+F L++YYL L +E+V++F
Sbjct: 64 SEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHF 106
>UNIPROTKB|Q99856 [details] [associations]
symbol:ARID3A "AT-rich interactive domain-containing
protein 3A" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=NAS] [GO:0045121 "membrane raft" evidence=IDA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0045121
Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:U88047 EMBL:AF039850
EMBL:AF039844 EMBL:AF039845 EMBL:AF039846 EMBL:AF039847
EMBL:AF039848 EMBL:AF039849 EMBL:AY152547 EMBL:AY845638
EMBL:AC005391 EMBL:AC005379 EMBL:BC033163 EMBL:BC060828
IPI:IPI00018500 RefSeq:NP_005215.1 UniGene:Hs.501296 PDB:2KK0
PDBsum:2KK0 ProteinModelPortal:Q99856 SMR:Q99856 STRING:Q99856
PhosphoSite:Q99856 DMDM:12230034 PaxDb:Q99856 PRIDE:Q99856
DNASU:1820 Ensembl:ENST00000263620 GeneID:1820 KEGG:hsa:1820
UCSC:uc002lql.3 CTD:1820 GeneCards:GC19P000926 HGNC:HGNC:3031
HPA:HPA004793 MIM:603265 neXtProt:NX_Q99856 PharmGKB:PA27485
eggNOG:NOG327790 HOGENOM:HOG000236281 HOVERGEN:HBG050574
InParanoid:Q99856 OMA:NGIMYTG OrthoDB:EOG4Z36GC PhylomeDB:Q99856
EvolutionaryTrace:Q99856 GenomeRNAi:1820 NextBio:7417 Bgee:Q99856
CleanEx:HS_ARID3A Genevestigator:Q99856 GermOnline:ENSG00000116017
InterPro:IPR023334 PROSITE:PS51486 Uniprot:Q99856
Length = 593
Score = 154 (59.3 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL L+V VT +GGL +VI + W+E+ N PT+ITSA+F LR Y+
Sbjct: 261 RIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMK 320
Query: 128 LLYHFE 133
LY +E
Sbjct: 321 YLYPYE 326
Score = 49 (22.3 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 158 NGSASPE-EGSTINQLGSQGSSKLQIGCSVSGVI 190
N AS + S +N G+ GS+ + + ++G++
Sbjct: 496 NSQASESRQDSAVNLTGTNGSNSISMSVEINGIM 529
>UNIPROTKB|H3BQ92 [details] [associations]
symbol:ARID3B "AT-rich interactive domain-containing
protein 3B" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 GO:GO:0003677
GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:AC100835
HGNC:HGNC:14350 Ensembl:ENST00000566147 Bgee:H3BQ92 Uniprot:H3BQ92
Length = 138
Score = 138 (53.6 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 77 LDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFE 133
LDL+ L+ VT +GGL ++I + W+E+ N PT+ITSA+F LR Y+ LY +E
Sbjct: 6 LDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 62
>UNIPROTKB|I3L967 [details] [associations]
symbol:ARID3B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
InterPro:IPR023334 PROSITE:PS51486 EMBL:CU469022 EMBL:CU638715
Ensembl:ENSSSCT00000023820 OMA:MNIRISG Uniprot:I3L967
Length = 336
Score = 154 (59.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 38/123 (30%), Positives = 65/123 (52%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL+ L+ VT +GGL ++I + W+E+ N PT+ITSA+F LR Y+
Sbjct: 10 RIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMK 69
Query: 128 LLYHFEQVYYFRREAPSS--SMPDAVSGSSLDNGSASPEEGSTINQLGSQGSSKLQIGCS 185
LY +E ++A SS + A+ G+ + P S++ G+S +
Sbjct: 70 YLYAYE----CEKKALSSPAELQAAIDGNRREG--RRPSYSSSLFGYSPAGASHAATAAA 123
Query: 186 VSG 188
V+G
Sbjct: 124 VTG 126
>ZFIN|ZDB-GENE-070209-182 [details] [associations]
symbol:arid3b "AT rich interactive domain 3B
(Bright like)" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 ZFIN:ZDB-GENE-070209-182
GO:GO:0003677 GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 eggNOG:NOG327790 HOGENOM:HOG000236281
InterPro:IPR023334 PROSITE:PS51486 CTD:10620 OrthoDB:EOG415GF5
EMBL:CR376821 EMBL:CU181885 EMBL:FP017193 EMBL:BC131867
IPI:IPI00915616 RefSeq:NP_001076471.1 UniGene:Dr.150509 SMR:A2RRV2
Ensembl:ENSDART00000103470 GeneID:571249 KEGG:dre:571249
HOVERGEN:HBG095882 InParanoid:A2RRV2 OMA:NANTREE NextBio:20890475
Uniprot:A2RRV2
Length = 537
Score = 150 (57.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 28/66 (42%), Positives = 43/66 (65%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL+ L+ VT +GGL +VI + W+E+ N PT+ITSA+F LR Y+
Sbjct: 214 RIPIMAKQVLDLYMLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMK 273
Query: 128 LLYHFE 133
LY +E
Sbjct: 274 YLYPYE 279
Score = 45 (20.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 146 SMPDAVSGSSLD-NGSASPEEGSTIN-QLGSQGSSKLQIGCSVSGVI 190
+M V+ ++L N + + EE ++ + S GS+ + + V+G+I
Sbjct: 436 AMASQVNPTNLRMNNANTREEKQDLSLSISSNGSASITVSVEVNGII 482
Score = 40 (19.1 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 151 VSGSSLDNGSASPEEGSTINQLGSQGSSKLQIGCSVSGVIDGKFDNGYLVTVNLG 205
+S S NGSAS +N + GS Q SV + F G+ T++ G
Sbjct: 460 LSLSISSNGSASITVSVEVNGIIYSGSLYAQKSGSVPTAVTAMFP-GHTSTLSPG 513
>UNIPROTKB|G3MWU0 [details] [associations]
symbol:ARID3C "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
EMBL:DAAA02023880 Ensembl:ENSBTAT00000064321 Uniprot:G3MWU0
Length = 385
Score = 152 (58.6 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
+VP + + LDL+ LF VT++GGL +VI + W+EV + PTTITSA+F LR Y+
Sbjct: 141 RVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMK 200
Query: 128 LLYHFE 133
LY +E
Sbjct: 201 YLYPYE 206
>UNIPROTKB|I3L5S4 [details] [associations]
symbol:ARID3C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
EMBL:CU928717 Ensembl:ENSSSCT00000025460 Uniprot:I3L5S4
Length = 386
Score = 152 (58.6 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
+VP + + LDL+ LF VT++GGL +VI + W+EV + PTTITSA+F LR Y+
Sbjct: 138 RVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMK 197
Query: 128 LLYHFE 133
LY +E
Sbjct: 198 YLYPYE 203
>MGI|MGI:3650624 [details] [associations]
symbol:Arid3c "AT rich interactive domain 3C (BRIGHT-like)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045121 "membrane
raft" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
MGI:MGI:3650624 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0045944 GO:GO:0006351 GO:GO:0003682 GO:GO:0045121
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
eggNOG:NOG327790 HOGENOM:HOG000236281 HOVERGEN:HBG050574
InterPro:IPR023334 PROSITE:PS51486 CTD:138715 OMA:FARRQPV
EMBL:AL807796 EMBL:BC141237 IPI:IPI00556830 RefSeq:NP_001017362.1
UniGene:Mm.425179 ProteinModelPortal:A6PWV5 SMR:A6PWV5
PhosphoSite:A6PWV5 PRIDE:A6PWV5 Ensembl:ENSMUST00000084698
Ensembl:ENSMUST00000171251 GeneID:550619 KEGG:mmu:550619
UCSC:uc008sjj.1 InParanoid:B2RUN0 NextBio:414311 Bgee:A6PWV5
Genevestigator:A6PWV5 Uniprot:A6PWV5
Length = 409
Score = 152 (58.6 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
+VP + + LDL+ LF VT++GGL +VI + W+EV + PTTITSA+F LR Y+
Sbjct: 133 RVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMK 192
Query: 128 LLYHFE 133
LY +E
Sbjct: 193 YLYPYE 198
>RGD|1560943 [details] [associations]
symbol:Arid3c "AT rich interactive domain 3C (BRIGHT-like)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0045121 "membrane raft" evidence=IEA;ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 RGD:1560943
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003682 GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
OrthoDB:EOG415GF5 CTD:138715 OMA:FARRQPV IPI:IPI00563895
RefSeq:NP_001167452.1 UniGene:Rn.225882 ProteinModelPortal:D3ZQB1
Ensembl:ENSRNOT00000046589 GeneID:502946 KEGG:rno:502946
UCSC:RGD:1560943 NextBio:712863 Uniprot:D3ZQB1
Length = 410
Score = 152 (58.6 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
+VP + + LDL+ LF VT++GGL +VI + W+EV + PTTITSA+F LR Y+
Sbjct: 134 RVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMK 193
Query: 128 LLYHFE 133
LY +E
Sbjct: 194 YLYPYE 199
>UNIPROTKB|E2RGA0 [details] [associations]
symbol:ARID3C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045121
"membrane raft" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003682 GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
CTD:138715 OMA:FARRQPV EMBL:AAEX03007945 RefSeq:XP_854656.1
ProteinModelPortal:E2RGA0 Ensembl:ENSCAFT00000028460 GeneID:611843
KEGG:cfa:611843 NextBio:20897379 Uniprot:E2RGA0
Length = 411
Score = 152 (58.6 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
+VP + + LDL+ LF VT++GGL +VI + W+EV + PTTITSA+F LR Y+
Sbjct: 135 RVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMK 194
Query: 128 LLYHFE 133
LY +E
Sbjct: 195 YLYPYE 200
>UNIPROTKB|A6NKF2 [details] [associations]
symbol:ARID3C "AT-rich interactive domain-containing
protein 3C" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0045121
"membrane raft" evidence=IDA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0045944 GO:GO:0006351 GO:GO:0003682
GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774 eggNOG:NOG327790
HOGENOM:HOG000236281 HOVERGEN:HBG050574 InterPro:IPR023334
PROSITE:PS51486 OrthoDB:EOG415GF5 EMBL:AL450283 IPI:IPI00062225
RefSeq:NP_001017363.1 UniGene:Hs.534549 ProteinModelPortal:A6NKF2
SMR:A6NKF2 STRING:A6NKF2 PhosphoSite:A6NKF2 PaxDb:A6NKF2
PRIDE:A6NKF2 DNASU:138715 Ensembl:ENST00000378909 GeneID:138715
KEGG:hsa:138715 UCSC:uc011lon.2 CTD:138715 GeneCards:GC09M034621
HGNC:HGNC:21209 neXtProt:NX_A6NKF2 PharmGKB:PA134928507
InParanoid:A6NKF2 OMA:FARRQPV GenomeRNAi:138715 NextBio:83815
Bgee:A6NKF2 CleanEx:HS_ARID3C Genevestigator:A6NKF2 Uniprot:A6NKF2
Length = 412
Score = 152 (58.6 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
+VP + + LDL+ LF VT++GGL +VI + W+EV + PTTITSA+F LR Y+
Sbjct: 136 RVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMK 195
Query: 128 LLYHFE 133
LY +E
Sbjct: 196 YLYPYE 201
>UNIPROTKB|F1MGP2 [details] [associations]
symbol:ARID3C "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045121 "membrane raft"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003682 GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
CTD:138715 OMA:FARRQPV EMBL:DAAA02023880 IPI:IPI00842301
RefSeq:XP_002689857.1 RefSeq:XP_600416.3 ProteinModelPortal:F1MGP2
Ensembl:ENSBTAT00000036468 GeneID:522142 KEGG:bta:522142
NextBio:20873455 Uniprot:F1MGP2
Length = 415
Score = 152 (58.6 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
+VP + + LDL+ LF VT++GGL +VI + W+EV + PTTITSA+F LR Y+
Sbjct: 141 RVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMK 200
Query: 128 LLYHFE 133
LY +E
Sbjct: 201 YLYPYE 206
>UNIPROTKB|F1SEC1 [details] [associations]
symbol:ARID3C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045121 "membrane raft"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003682 GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
OMA:FARRQPV EMBL:CU928717 RefSeq:XP_003130719.1 UniGene:Ssc.88977
Ensembl:ENSSSCT00000012008 GeneID:100524334 KEGG:ssc:100524334
Uniprot:F1SEC1
Length = 416
Score = 152 (58.6 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
+VP + + LDL+ LF VT++GGL +VI + W+EV + PTTITSA+F LR Y+
Sbjct: 138 RVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMK 197
Query: 128 LLYHFE 133
LY +E
Sbjct: 198 YLYPYE 203
>UNIPROTKB|E1BGZ3 [details] [associations]
symbol:ARID3A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045121 "membrane raft"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0005634
GO:GO:0003677 GO:GO:0045944 GO:GO:0003700 GO:GO:0003682
GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 OMA:NGIMYTG InterPro:IPR023334
PROSITE:PS51486 EMBL:DAAA02020237 EMBL:DAAA02020238
EMBL:DAAA02020239 IPI:IPI00696235 UniGene:Bt.45437
ProteinModelPortal:E1BGZ3 Ensembl:ENSBTAT00000011354
NextBio:20869863 Uniprot:E1BGZ3
Length = 590
Score = 154 (59.3 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL L+V VT +GGL +VI + W+E+ N PT+ITSA+F LR Y+
Sbjct: 264 RIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMK 323
Query: 128 LLYHFE 133
LY +E
Sbjct: 324 YLYPYE 329
Score = 40 (19.1 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 141 EAPSSSMPDAVS--GSSLDNGSASPEEGSTINQLGSQ 175
+ P+ + P A S G S G S S+ + GSQ
Sbjct: 535 QPPAPTPPSAPSKGGGSSSRGGNSGTNSSSSSSAGSQ 571
Score = 39 (18.8 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 158 NGSASPE-EGSTINQLGSQGSSKLQIGCSVSGVI 190
N AS + S N + GS+ + + ++G++
Sbjct: 494 NSQASESRQDSAANLTSTNGSNSISMSVEINGIM 527
>UNIPROTKB|E1BIF8 [details] [associations]
symbol:E1BIF8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02073284
IPI:IPI00728960 Ensembl:ENSBTAT00000006714 OMA:RAISEMW
Uniprot:E1BIF8
Length = 194
Score = 138 (53.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ FF+E + +K G ++KK+G +W+NL++++KQ+Y K K
Sbjct: 86 DPNAPKRPPSGFFLFFSEFCSEIKSTNPGISIGDVAKKLGEMWNNLSDSKKQLYVNKDAK 145
Query: 305 DKERYKSEMLEYRSSYDST 323
K +Y+ ++ +Y+ +D T
Sbjct: 146 LK-KYEKDVADYKGEFDGT 163
>UNIPROTKB|F1PDC9 [details] [associations]
symbol:ARID3A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0003677
GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 CTD:1820 OMA:NGIMYTG
InterPro:IPR023334 PROSITE:PS51486 EMBL:AAEX03012672
RefSeq:XP_855193.3 Ensembl:ENSCAFT00000031240 GeneID:612370
KEGG:cfa:612370 Uniprot:F1PDC9
Length = 605
Score = 154 (59.3 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL L+V VT +GGL +VI + W+E+ N PT+ITSA+F LR Y+
Sbjct: 279 RIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMK 338
Query: 128 LLYHFE 133
LY +E
Sbjct: 339 YLYPYE 344
>UNIPROTKB|E1BIU3 [details] [associations]
symbol:LOC532409 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02004182
IPI:IPI00839111 RefSeq:XP_003585778.1 Ensembl:ENSBTAT00000044962
GeneID:532409 KEGG:bta:532409 OMA:FLENTRC ArrayExpress:E1BIU3
Uniprot:E1BIU3
Length = 186
Score = 135 (52.6 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E ++K G ++KK+G +W+NL+++EKQ Y K K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAK 148
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 149 LKEKYEKDVADYKS 162
>UNIPROTKB|F1S6T2 [details] [associations]
symbol:ARID3A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045121 "membrane raft"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0005634
GO:GO:0003677 GO:GO:0045944 GO:GO:0003700 GO:GO:0003682
GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 CTD:1820 OMA:NGIMYTG
InterPro:IPR023334 PROSITE:PS51486 EMBL:FP475994
RefSeq:XP_003354004.1 Ensembl:ENSSSCT00000014658 GeneID:100622803
KEGG:ssc:100622803 Uniprot:F1S6T2
Length = 596
Score = 154 (59.3 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL L+V VT +GGL +VI + W+E+ N PT+ITSA+F LR Y+
Sbjct: 265 RIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMK 324
Query: 128 LLYHFE 133
LY +E
Sbjct: 325 YLYPYE 330
Score = 39 (18.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 158 NGSASPE-EGSTINQLGSQGSSKLQIGCSVSGVI 190
N AS + S N + GS+ + + ++G++
Sbjct: 495 NSQASESRQDSAANLTSTNGSNSISMSVEINGIM 528
>MGI|MGI:1328360 [details] [associations]
symbol:Arid3a "AT rich interactive domain 3A (BRIGHT-like)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IPI]
[GO:0045121 "membrane raft" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI] InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011
SMART:SM00501 MGI:MGI:1328360 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 CTD:1820 eggNOG:NOG327790
HOGENOM:HOG000236281 HOVERGEN:HBG050574 OMA:NGIMYTG
OrthoDB:EOG4Z36GC InterPro:IPR023334 PROSITE:PS51486 EMBL:U60335
EMBL:AK141283 EMBL:AK154956 EMBL:BC050925 IPI:IPI00125956
RefSeq:NP_031906.1 UniGene:Mm.301282 ProteinModelPortal:Q62431
SMR:Q62431 STRING:Q62431 PhosphoSite:Q62431 PaxDb:Q62431
PRIDE:Q62431 Ensembl:ENSMUST00000019708 Ensembl:ENSMUST00000105376
Ensembl:ENSMUST00000105377 GeneID:13496 KEGG:mmu:13496
UCSC:uc007gap.1 InParanoid:Q62431 ChiTaRS:ARID3A NextBio:284025
Bgee:Q62431 CleanEx:MM_ARID3A Genevestigator:Q62431
GermOnline:ENSMUSG00000019564 Uniprot:Q62431
Length = 601
Score = 154 (59.3 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL L+V VT +GGL +VI + W+E+ N PT+ITSA+F LR Y+
Sbjct: 266 RIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMK 325
Query: 128 LLYHFE 133
LY +E
Sbjct: 326 YLYPYE 331
Score = 38 (18.4 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 158 NGSASPE-EGSTINQLGSQGSSKLQIGCSVSGVI 190
N AS + S ++ + GS+ + + ++G++
Sbjct: 501 NSQASESRQDSAVSLTSANGSNSISMSVEMNGIV 534
>POMBASE|SPAC57A10.09c [details] [associations]
symbol:nhp6 "High-mobility group non-histone chromatin
protein (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] InterPro:IPR009071
PomBase:SPAC57A10.09c Pfam:PF00505 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0033554 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0000790 GO:GO:0006334 GO:GO:0006359 HOGENOM:HOG000197861
OMA:LANPNNK OrthoDB:EOG4S7P0P PIR:T38936 RefSeq:NP_593314.1
ProteinModelPortal:P87057 STRING:P87057
EnsemblFungi:SPAC57A10.09c.1 GeneID:2542878 KEGG:spo:SPAC57A10.09c
NextBio:20803918 Uniprot:P87057
Length = 108
Score = 129 (50.5 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLK---PHY-YGQEKAISKKIGVLWSNLTEAEKQVYQEK 301
DP+ PK N S + FF E+ ++K P +GQ + +G W LT E++ Y+EK
Sbjct: 12 DPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQ---LGSLLGKRWKELTSTEREPYEEK 68
Query: 302 GLKDKERYKSEMLEY 316
+DKERY+ E EY
Sbjct: 69 ARQDKERYERERKEY 83
>RGD|1564407 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0045578 "negative regulation of B
cell differentiation" evidence=ISO] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISO]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1564407 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 CTD:3149 KO:K11296 OMA:DNEKQPY
EMBL:BC158739 EMBL:CH474187 IPI:IPI00955625 RefSeq:NP_001166812.1
RefSeq:XP_003751731.1 UniGene:Rn.203482 SMR:B0BN99 STRING:B0BN99
Ensembl:ENSRNOT00000015044 GeneID:100912369 GeneID:305373
KEGG:rno:100912369 KEGG:rno:305373 NextBio:654455
Genevestigator:B0BN99 Uniprot:B0BN99
Length = 200
Score = 137 (53.3 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E ++K G ++KK+G +W+NL+++EKQ Y K K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYMTKAAK 148
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 149 LKEKYEKDVADYKS 162
>UNIPROTKB|P36194 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:D14314 IPI:IPI00591130
PIR:I50254 UniGene:Gga.4513 ProteinModelPortal:P36194 SMR:P36194
STRING:P36194 PRIDE:P36194 Uniprot:P36194
Length = 201
Score = 137 (53.3 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E ++K G ++KK+G +W+NL++ EKQ Y K K
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAK 147
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 148 LKEKYEKDVADYKS 161
>UNIPROTKB|E7ES08 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00643317
ProteinModelPortal:E7ES08 SMR:E7ES08 PRIDE:E7ES08
Ensembl:ENST00000419110 ArrayExpress:E7ES08 Bgee:E7ES08
Uniprot:E7ES08
Length = 188
Score = 133 (51.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E ++K G ++KK+G +W+NL ++EKQ Y K K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAK 148
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 149 LKEKYEKDVADYKS 162
>UNIPROTKB|E1BI80 [details] [associations]
symbol:ARID3B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
InterPro:IPR023334 PROSITE:PS51486 CTD:10620 OMA:LFSMARQ
EMBL:DAAA02052500 EMBL:DAAA02052501 EMBL:DAAA02052502
IPI:IPI00706373 RefSeq:NP_001179977.1 UniGene:Bt.24486
ProteinModelPortal:E1BI80 Ensembl:ENSBTAT00000015698 GeneID:532938
KEGG:bta:532938 NextBio:20875853 Uniprot:E1BI80
Length = 553
Score = 148 (57.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL+ L+ VT +GGL ++I + W+E+ N PT+ITSA+F LR Y+
Sbjct: 236 RIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMK 295
Query: 128 LLYHFE 133
LY +E
Sbjct: 296 YLYAYE 301
>UNIPROTKB|F1NL47 [details] [associations]
symbol:ARID3B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
InterPro:IPR023334 PROSITE:PS51486 EMBL:AADN02051006
EMBL:AADN02051007 IPI:IPI00585316 Ensembl:ENSGALT00000002097
OMA:IRINGRX Uniprot:F1NL47
Length = 559
Score = 148 (57.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL+ L+ VT +GGL ++I + W+E+ N PT+ITSA+F LR Y+
Sbjct: 246 RIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMK 305
Query: 128 LLYHFE 133
LY +E
Sbjct: 306 YLYAYE 311
>UNIPROTKB|E2RFI5 [details] [associations]
symbol:ARID3B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0003677
GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
CTD:10620 OMA:LFSMARQ EMBL:AAEX03016311 RefSeq:XP_544771.2
ProteinModelPortal:E2RFI5 Ensembl:ENSCAFT00000028463 GeneID:487646
KEGG:cfa:487646 Uniprot:E2RFI5
Length = 560
Score = 148 (57.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL+ L+ VT +GGL ++I + W+E+ N PT+ITSA+F LR Y+
Sbjct: 239 RIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMK 298
Query: 128 LLYHFE 133
LY +E
Sbjct: 299 YLYAYE 304
>RGD|1306335 [details] [associations]
symbol:Arid3b "AT rich interactive domain 3B (Bright like)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
RGD:1306335 GO:GO:0003677 GO:GO:0005622 Gene3D:1.10.150.60
SUPFAM:SSF46774 InterPro:IPR023334 PROSITE:PS51486 IPI:IPI00370524
Ensembl:ENSRNOT00000026736 UCSC:RGD:1306335 ArrayExpress:D4A102
Uniprot:D4A102
Length = 560
Score = 148 (57.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL+ L+ VT +GGL ++I + W+E+ N PT+ITSA+F LR Y+
Sbjct: 230 RIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMK 289
Query: 128 LLYHFE 133
LY +E
Sbjct: 290 YLYAYE 295
>MGI|MGI:1930768 [details] [associations]
symbol:Arid3b "AT rich interactive domain 3B (BRIGHT-like)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 MGI:MGI:1930768 GO:GO:0007275
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
eggNOG:NOG327790 HOGENOM:HOG000236281 InterPro:IPR023334
PROSITE:PS51486 HSSP:Q24573 CTD:10620 HOVERGEN:HBG103680
OMA:LFSMARQ EMBL:AF116847 EMBL:AK139455 EMBL:BC049776
IPI:IPI00275919 IPI:IPI00277032 IPI:IPI00652493 RefSeq:NP_062663.1
UniGene:Mm.425588 ProteinModelPortal:Q9Z1N7 SMR:Q9Z1N7
IntAct:Q9Z1N7 STRING:Q9Z1N7 PhosphoSite:Q9Z1N7 PRIDE:Q9Z1N7
Ensembl:ENSMUST00000004780 Ensembl:ENSMUST00000164035
Ensembl:ENSMUST00000171444 GeneID:56380 KEGG:mmu:56380
UCSC:uc009pvt.1 UCSC:uc009pvw.1 InParanoid:Q9Z1N7 OrthoDB:EOG415GF5
NextBio:312460 Bgee:Q9Z1N7 CleanEx:MM_ARID3B Genevestigator:Q9Z1N7
Uniprot:Q9Z1N7
Length = 568
Score = 148 (57.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL+ L+ VT +GGL ++I + W+E+ N PT+ITSA+F LR Y+
Sbjct: 236 RIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMK 295
Query: 128 LLYHFE 133
LY +E
Sbjct: 296 YLYAYE 301
>UNIPROTKB|J9NVS3 [details] [associations]
symbol:HMGB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 OMA:DNEKQPY
EMBL:AAEX03027044 EMBL:AAEX03027045 Ensembl:ENSCAFT00000045229
Uniprot:J9NVS3
Length = 219
Score = 138 (53.6 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E ++K G ++KK+G +W+NL+++EKQ Y K K
Sbjct: 107 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYNNKAAK 166
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 167 LKEKYEKDVADYKS 180
>UNIPROTKB|Q32L31 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9913
"Bos taurus" [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IDA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006310
GO:GO:0003690 Pfam:PF09011 HSSP:P48431 HOGENOM:HOG000197861
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2
eggNOG:NOG320947 EMBL:BC109793 IPI:IPI00883385
RefSeq:NP_001069753.2 RefSeq:NP_001106728.1 UniGene:Bt.62966
ProteinModelPortal:Q32L31 SMR:Q32L31 Ensembl:ENSBTAT00000005793
Ensembl:ENSBTAT00000006785 GeneID:613729 KEGG:bta:613729 CTD:3149
InParanoid:Q32L31 KO:K11296 OMA:DNEKQPY NextBio:20898733
ArrayExpress:Q32L31 Uniprot:Q32L31
Length = 200
Score = 135 (52.6 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E ++K G ++KK+G +W+NL+++EKQ Y K K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAK 148
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 149 LKEKYEKDVADYKS 162
>UNIPROTKB|Q8IVW6 [details] [associations]
symbol:ARID3B "AT-rich interactive domain-containing
protein 3B" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.150.60
SUPFAM:SSF46774 eggNOG:NOG327790 HOGENOM:HOG000236281
InterPro:IPR023334 PROSITE:PS51486 EMBL:AF116846 EMBL:AB208830
EMBL:AC100835 EMBL:BC041792 IPI:IPI00328266 IPI:IPI00793438
IPI:IPI00853367 RefSeq:NP_006456.1 UniGene:Hs.655532 HSSP:Q24573
ProteinModelPortal:Q8IVW6 SMR:Q8IVW6 STRING:Q8IVW6
PhosphoSite:Q8IVW6 DMDM:152013359 PaxDb:Q8IVW6 PRIDE:Q8IVW6
Ensembl:ENST00000346246 GeneID:10620 KEGG:hsa:10620 UCSC:uc002ayc.3
UCSC:uc002ayd.3 UCSC:uc002aye.3 CTD:10620 GeneCards:GC15P074833
HGNC:HGNC:14350 MIM:612457 neXtProt:NX_Q8IVW6 PharmGKB:PA134896829
HOVERGEN:HBG103680 InParanoid:Q8IVW6 OMA:LFSMARQ GenomeRNAi:10620
NextBio:40352 ArrayExpress:Q8IVW6 Bgee:Q8IVW6 CleanEx:HS_ARID3B
Genevestigator:Q8IVW6 Uniprot:Q8IVW6
Length = 561
Score = 148 (57.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL+ L+ VT +GGL ++I + W+E+ N PT+ITSA+F LR Y+
Sbjct: 238 RIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMK 297
Query: 128 LLYHFE 133
LY +E
Sbjct: 298 YLYAYE 303
Score = 38 (18.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 166 GSTINQLGSQGSSKLQIGCSVS 187
GS LGS SS CS S
Sbjct: 522 GSAPQSLGSSASSSSSSHCSPS 543
>UNIPROTKB|F1RQ19 [details] [associations]
symbol:LOC100517745 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 KO:K11296 OMA:DNEKQPY
EMBL:CU929821 RefSeq:XP_003135516.1 UniGene:Ssc.27311
Ensembl:ENSSSCT00000013934 GeneID:100517745 KEGG:ssc:100517745
Uniprot:F1RQ19
Length = 202
Score = 135 (52.6 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E ++K G ++KK+G +W+NL+++EKQ Y K K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAK 148
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 149 LKEKYEKDVADYKS 162
>UNIPROTKB|F1MF42 [details] [associations]
symbol:LOC618297 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02009820
IPI:IPI00687888 Ensembl:ENSBTAT00000027565 OMA:INTCREE
Uniprot:F1MF42
Length = 196
Score = 128 (50.1 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +EH ++K + G +KK+G +WS + +KQ Y++K K
Sbjct: 80 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 139
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 140 LKEKYEKDIAAYRA 153
Score = 37 (18.1 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 35 YPPPTAKYEDIAQSSDLFWATLEAFHKS-FGDKFK 68
+P + + + ++ W T+ A KS F D K
Sbjct: 20 HPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 54
>UNIPROTKB|E7EQU1 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00640781
ProteinModelPortal:E7EQU1 SMR:E7EQU1 PRIDE:E7EQU1
Ensembl:ENST00000455596 ArrayExpress:E7EQU1 Bgee:E7EQU1
Uniprot:E7EQU1
Length = 193
Score = 133 (51.9 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E ++K G ++KK+G +W+NL ++EKQ Y K K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAK 148
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 149 LKEKYEKDVADYKS 162
>UNIPROTKB|F1NAK8 [details] [associations]
symbol:LOC100858693 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0045121
"membrane raft" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0003677 GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
EMBL:AADN02068975 EMBL:AADN02068976 IPI:IPI00651600
Ensembl:ENSGALT00000009379 OMA:RQTFGTA Uniprot:F1NAK8
Length = 368
Score = 140 (54.3 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL+ L+ VT +GGL +VI + W+E+ N PT+ITSA+ +R Y+
Sbjct: 112 RIPIMAKQVLDLYTLYRLVTDKGGLVEVINKKIWREITKGLNLPTSITSAALTVRTQYMK 171
Query: 128 LLYHFE 133
LY +E
Sbjct: 172 YLYPYE 177
Score = 39 (18.8 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 142 APSSSMPDAVSGSSLDNGSASPEEGSTINQLGSQGSSKLQIGCSVSGVI 190
A +S P + S+ GS +E + +N L + G S + + ++GV+
Sbjct: 321 AVASQFPMNIKVSN--RGSNDRQE-TALN-LSTNGISSINMSIEINGVV 365
>UNIPROTKB|O15347 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0003690 "double-stranded DNA binding"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=TAS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0007275 GO:GO:0005634 GO:GO:0005694 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006310 GO:GO:0003690 Pfam:PF09011 HOGENOM:HOG000197861
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149
KO:K11296 OMA:DNEKQPY EMBL:Y10043 EMBL:AF003626 EMBL:BC070482
IPI:IPI00217477 RefSeq:NP_005333.2 UniGene:Hs.19114 PDB:2EQZ
PDB:2YQI PDBsum:2EQZ PDBsum:2YQI ProteinModelPortal:O15347
SMR:O15347 IntAct:O15347 STRING:O15347 PhosphoSite:O15347
PaxDb:O15347 PeptideAtlas:O15347 PRIDE:O15347 DNASU:3149
Ensembl:ENST00000325307 Ensembl:ENST00000448905 GeneID:3149
KEGG:hsa:3149 UCSC:uc004fep.3 GeneCards:GC0XP150148 HGNC:HGNC:5004
MIM:300193 neXtProt:NX_O15347 PharmGKB:PA35092 InParanoid:O15347
PhylomeDB:O15347 EvolutionaryTrace:O15347 GenomeRNAi:3149
NextBio:12480 ArrayExpress:O15347 Bgee:O15347 CleanEx:HS_HMGB3
Genevestigator:O15347 GermOnline:ENSG00000029993 Uniprot:O15347
Length = 200
Score = 133 (51.9 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E ++K G ++KK+G +W+NL ++EKQ Y K K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAK 148
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 149 LKEKYEKDVADYKS 162
>MGI|MGI:1098219 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0045578 "negative regulation of B cell differentiation"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:1098219 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045638
Pfam:PF09011 GO:GO:0045578 HOGENOM:HOG000197861 HOVERGEN:HBG009000
OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149 KO:K11296 EMBL:AF022465
EMBL:BC011276 EMBL:BC083352 IPI:IPI00228879 RefSeq:NP_032279.1
UniGene:Mm.336087 ProteinModelPortal:O54879 SMR:O54879
STRING:O54879 PhosphoSite:O54879 PaxDb:O54879 PRIDE:O54879
Ensembl:ENSMUST00000015361 Ensembl:ENSMUST00000072699
Ensembl:ENSMUST00000088874 Ensembl:ENSMUST00000114582 GeneID:15354
KEGG:mmu:15354 InParanoid:O54879 NextBio:287964 Bgee:O54879
CleanEx:MM_HMGB3 Genevestigator:O54879
GermOnline:ENSMUSG00000015217 Uniprot:O54879
Length = 200
Score = 132 (51.5 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E ++K G ++KK+G +W+NL++ EKQ Y K K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTKAAK 148
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 149 LKEKYEKDVADYKS 162
>UNIPROTKB|P40673 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9913
"Bos taurus" [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=ISS]
[GO:0008301 "DNA binding, bending" evidence=ISS;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0042393
"histone binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
[GO:0060326 "cell chemotaxis" evidence=IEA] [GO:0050786 "RAGE
receptor binding" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045654 "positive regulation of megakaryocyte
differentiation" evidence=IEA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043234 "protein complex" evidence=IEA] [GO:0042056
"chemoattractant activity" evidence=IEA] [GO:0032075 "positive
regulation of nuclease activity" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0005615
GO:GO:0043234 GO:GO:0005730 GO:GO:0003684 GO:GO:0001938
GO:GO:0045944 GO:GO:0003700 GO:GO:0006357 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0007289 GO:GO:0003690
GO:GO:0003697 GO:GO:0045648 GO:GO:0045654 GO:GO:0060326
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 GO:GO:0033151 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:BC109755 IPI:IPI00689856
RefSeq:NP_001032705.1 UniGene:Bt.6397 ProteinModelPortal:P40673
SMR:P40673 STRING:P40673 PRIDE:P40673 Ensembl:ENSBTAT00000020096
GeneID:540444 KEGG:bta:540444 CTD:3148 InParanoid:P40673
OMA:KIKNDHP OrthoDB:EOG4TTGK2 NextBio:20878641 Uniprot:P40673
Length = 209
Score = 128 (50.1 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +EH ++K + G +KK+G +WS + +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
Score = 37 (18.1 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 35 YPPPTAKYEDIAQSSDLFWATLEAFHKS-FGDKFK 68
+P + + + ++ W T+ A KS F D K
Sbjct: 31 HPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
>UNIPROTKB|P26583 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0007289 "spermatid nucleus differentiation"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=NAS]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006334
"nucleosome assembly" evidence=NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IDA] [GO:0001938
"positive regulation of endothelial cell proliferation"
evidence=IDA] [GO:0042056 "chemoattractant activity" evidence=IDA]
[GO:0060326 "cell chemotaxis" evidence=IDA] [GO:0050786 "RAGE
receptor binding" evidence=IGI] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0043234 "protein complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=IMP] [GO:0005615 "extracellular space"
evidence=IDA] [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEP] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0032075 "positive
regulation of nuclease activity" evidence=IDA] [GO:0033151 "V(D)J
recombination" evidence=ISS] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IDA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=IDA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IMP] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=IMP]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006309 "apoptotic DNA fragmentation" evidence=TAS] [GO:0006915
"apoptotic process" evidence=TAS] [GO:0006921 "cellular component
disassembly involved in execution phase of apoptosis" evidence=TAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0050918 "positive chemotaxis" evidence=IDA]
Reactome:REACT_578 InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471 GO:GO:0045892
GO:GO:0005615 GO:GO:0043234 GO:GO:0005654 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0003690 GO:GO:0003697
EMBL:CH471056 GO:GO:0045648 GO:GO:0045654 GO:GO:0048015
GO:GO:0060326 GO:GO:0006309 GO:GO:0000793 GO:GO:0042056
GO:GO:0006334 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GO:GO:0033151 GO:GO:0006265 HOGENOM:HOG000197861 KO:K11295
HOVERGEN:HBG009000 GO:GO:0006288 HPA:HPA003506 GO:GO:0050786
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:M83665 EMBL:X62534
EMBL:BT019782 EMBL:AK311864 EMBL:BC001063 EMBL:BC100019 EMBL:Z17240
IPI:IPI00219097 PIR:A42425 PIR:S30221 RefSeq:NP_001124160.1
RefSeq:NP_001124161.1 RefSeq:NP_002120.1 UniGene:Hs.434953
ProteinModelPortal:P26583 SMR:P26583 IntAct:P26583 MINT:MINT-240190
STRING:P26583 PhosphoSite:P26583 DMDM:123374 PaxDb:P26583
PeptideAtlas:P26583 PRIDE:P26583 DNASU:3148 Ensembl:ENST00000296503
Ensembl:ENST00000438704 Ensembl:ENST00000446922 GeneID:3148
KEGG:hsa:3148 UCSC:uc003ita.3 GeneCards:GC04M174252 HGNC:HGNC:5000
MIM:163906 neXtProt:NX_P26583 PharmGKB:PA35091 InParanoid:P26583
ChiTaRS:HMGB2 GenomeRNAi:3148 NextBio:12476 PMAP-CutDB:P26583
ArrayExpress:P26583 Bgee:P26583 CleanEx:HS_HMGB2
Genevestigator:P26583 GermOnline:ENSG00000164104 Uniprot:P26583
Length = 209
Score = 128 (50.1 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +EH ++K + G +KK+G +WS + +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
Score = 37 (18.1 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 35 YPPPTAKYEDIAQSSDLFWATLEAFHKS-FGDKFK 68
+P + + + ++ W T+ A KS F D K
Sbjct: 31 HPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
>UNIPROTKB|E2QY30 [details] [associations]
symbol:HMGB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0060326 "cell chemotaxis"
evidence=IEA] [GO:0050786 "RAGE receptor binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045654 "positive regulation of megakaryocyte differentiation"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043234 "protein
complex" evidence=IEA] [GO:0042056 "chemoattractant activity"
evidence=IEA] [GO:0032075 "positive regulation of nuclease
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0005615 "extracellular space" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471
GO:GO:0045892 GO:GO:0005615 GO:GO:0043234 GO:GO:0005730
GO:GO:0003684 GO:GO:0001938 GO:GO:0045944 GO:GO:0003700
GO:GO:0071222 GO:GO:0048545 GO:GO:0008584 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 KO:K11295 GeneTree:ENSGT00560000076717
GO:GO:0006288 CTD:3148 OMA:KIKNDHP EMBL:AAEX03014309
RefSeq:XP_543194.2 Ensembl:ENSCAFT00000012535 GeneID:486068
KEGG:cfa:486068 NextBio:20859918 Uniprot:E2QY30
Length = 210
Score = 128 (50.1 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +EH ++K + G +KK+G +WS + +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
Score = 37 (18.1 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 35 YPPPTAKYEDIAQSSDLFWATLEAFHKS-FGDKFK 68
+P + + + ++ W T+ A KS F D K
Sbjct: 31 HPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
>UNIPROTKB|P17741 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9823
"Sus scrofa" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0008301 "DNA binding,
bending" evidence=ISS;IDA] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0006357 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:J02895 PIR:A34719
RefSeq:NP_999228.1 UniGene:Ssc.226 PDB:1J3C PDB:1J3D PDB:1J3X
PDBsum:1J3C PDBsum:1J3D PDBsum:1J3X ProteinModelPortal:P17741
SMR:P17741 GeneID:397130 KEGG:ssc:397130 EvolutionaryTrace:P17741
Uniprot:P17741
Length = 210
Score = 128 (50.1 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +EH ++K + G +KK+G +WS + +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
Score = 37 (18.1 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 35 YPPPTAKYEDIAQSSDLFWATLEAFHKS-FGDKFK 68
+P + + + ++ W T+ A KS F D K
Sbjct: 31 HPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
>GENEDB_PFALCIPARUM|PFL0145c [details] [associations]
symbol:PFL0145c "high mobility group protein"
species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000785 "chromatin" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0000785 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AE014188 HOGENOM:HOG000197861 HSSP:P11632 OMA:FFANDNR
GenomeReviews:AE014188_GR RefSeq:XP_001350438.1
ProteinModelPortal:Q8I616 EnsemblProtists:PFL0145c:mRNA
GeneID:811082 KEGG:pfa:PFL0145c EuPathDB:PlasmoDB:PF3D7_1202900
ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 119 (46.9 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARL---KPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKG 302
DP PK + S Y FF E A + +P + K IG W+ L E EK +++K
Sbjct: 17 DPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKA 76
Query: 303 LKDKERYKSEMLEY 316
+DK RY+ E EY
Sbjct: 77 QEDKLRYEKEKAEY 90
>UNIPROTKB|Q8I616 [details] [associations]
symbol:HMGB1 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0000785 "chromatin" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0000785 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AE014188 HOGENOM:HOG000197861
HSSP:P11632 OMA:FFANDNR GenomeReviews:AE014188_GR
RefSeq:XP_001350438.1 ProteinModelPortal:Q8I616
EnsemblProtists:PFL0145c:mRNA GeneID:811082 KEGG:pfa:PFL0145c
EuPathDB:PlasmoDB:PF3D7_1202900 ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 119 (46.9 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARL---KPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKG 302
DP PK + S Y FF E A + +P + K IG W+ L E EK +++K
Sbjct: 17 DPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKA 76
Query: 303 LKDKERYKSEMLEY 316
+DK RY+ E EY
Sbjct: 77 QEDKLRYEKEKAEY 90
>UNIPROTKB|P40618 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
HOVERGEN:HBG009000 UniGene:Gga.4513 CTD:3149 KO:K11296 EMBL:X63463
IPI:IPI00580706 PIR:S22359 RefSeq:NP_990626.2
ProteinModelPortal:P40618 SMR:P40618 STRING:P40618 GeneID:396232
KEGG:gga:396232 NextBio:20816284 Uniprot:P40618
Length = 202
Score = 131 (51.2 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E ++K G ++KK+G +W+NL++ EKQ Y K K
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAK 148
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 149 LKEKYEKDVADYKS 162
>RGD|1561694 [details] [associations]
symbol:RGD1561694 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_003752741 Ncbi:XP_003752789
Length = 209
Score = 131 (51.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +EH ++K + G +KK+G +WS + +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 305 DKERYKSEMLEYRSSYDSTV 324
KE+Y+ ++ YR+ S V
Sbjct: 151 LKEKYEKDIAAYRAKGKSEV 170
>RGD|1564519 [details] [associations]
symbol:RGD1564519 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001063065 Ncbi:XP_001063065
Length = 210
Score = 131 (51.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +EH ++K + G +KK+G +WS + +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 305 DKERYKSEMLEYRSSYDSTV 324
KE+Y+ ++ YR+ S V
Sbjct: 151 LKEKYEKDIAAYRAKGKSEV 170
>RGD|69291 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10116 "Rattus
norvegicus" [GO:0000793 "condensed chromosome" evidence=ISO;ISS]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0005615
"extracellular space" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISO;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0007049 "cell cycle" evidence=IEP]
[GO:0007283 "spermatogenesis" evidence=ISO] [GO:0007289 "spermatid
nucleus differentiation" evidence=ISO] [GO:0007399 "nervous system
development" evidence=IDA] [GO:0008289 "lipid binding" evidence=IDA]
[GO:0008301 "DNA binding, bending" evidence=ISO;ISS] [GO:0008584
"male gonad development" evidence=ISO] [GO:0019904 "protein domain
specific binding" evidence=ISO] [GO:0031100 "organ regeneration"
evidence=IEP] [GO:0031493 "nucleosomal histone binding"
evidence=IDA] [GO:0032075 "positive regulation of nuclease activity"
evidence=ISO] [GO:0042056 "chemoattractant activity" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] [GO:0043388 "positive
regulation of DNA binding" evidence=ISO] [GO:0044212 "transcription
regulatory region DNA binding" evidence=ISO] [GO:0045648 "positive
regulation of erythrocyte differentiation" evidence=ISO] [GO:0045654
"positive regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO;IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS]
[GO:0048545 "response to steroid hormone stimulus" evidence=ISO]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive regulation
of DNA metabolic process" evidence=IMP] [GO:0060326 "cell
chemotaxis" evidence=ISO] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:69291
GO:GO:0005634 GO:GO:0048471 GO:GO:0045893 GO:GO:0007399
GO:GO:0031100 GO:GO:0006357 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0007049 GO:GO:0008289 GO:GO:0003690 GO:GO:0000793
GO:GO:0051054 GO:GO:0031493 Pfam:PF09011 HOGENOM:HOG000197861
KO:K11295 GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000
GO:GO:0006288 CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:D84418
EMBL:BC078866 EMBL:BC089854 EMBL:BC107455 IPI:IPI00876582
RefSeq:NP_058883.1 RefSeq:XP_001063065.2 RefSeq:XP_573272.3
UniGene:Rn.218982 UniGene:Rn.2874 ProteinModelPortal:P52925
SMR:P52925 STRING:P52925 DNASU:29395 Ensembl:ENSRNOT00000017635
Ensembl:ENSRNOT00000046874 GeneID:29395 GeneID:498072 KEGG:rno:29395
KEGG:rno:498072 UCSC:RGD:69291 CTD:498072 InParanoid:P52925
NextBio:609027 Genevestigator:P52925 GermOnline:ENSRNOG00000013167
GermOnline:ENSRNOG00000030313 Uniprot:P52925
Length = 210
Score = 131 (51.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +EH ++K + G +KK+G +WS + +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 305 DKERYKSEMLEYRSSYDSTV 324
KE+Y+ ++ YR+ S V
Sbjct: 151 LKEKYEKDIAAYRAKGKSEV 170
>UNIPROTKB|P07156 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:10029
"Cricetulus griseus" [GO:0000793 "condensed chromosome"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
GO:GO:0017055 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:Y00365
PIR:A27853 PDB:1HSM PDB:1HSN PDB:1NHM PDB:1NHN PDBsum:1HSM
PDBsum:1HSN PDBsum:1NHM PDBsum:1NHN ProteinModelPortal:P07156
SMR:P07156 PRIDE:P07156 EvolutionaryTrace:P07156 Uniprot:P07156
Length = 180
Score = 126 (49.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 56 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 115
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 116 LKEKYEKDIAAYRA 129
>RGD|1589841 [details] [associations]
symbol:LOC690940 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001076232 Ncbi:XP_001076232
Length = 214
Score = 125 (49.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ + YR+
Sbjct: 151 LKEKYEKDTAAYRA 164
Score = 38 (18.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 12/64 (18%), Positives = 25/64 (39%)
Query: 35 YPPPTAKYEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGK 94
+P + + ++++ W T+ A K KF+ KA + + +G K
Sbjct: 31 HPDASVNFSEVSKKCSERWKTMSAKEKG---KFEDMAKADKARYEREMKTYIPPKGETKK 87
Query: 95 VIRD 98
+D
Sbjct: 88 KFKD 91
>RGD|1593466 [details] [associations]
symbol:LOC689398 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001068941 Ncbi:XP_001068941
Length = 214
Score = 125 (49.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ + YR+
Sbjct: 151 LKEKYEKDTAAYRA 164
Score = 38 (18.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 12/64 (18%), Positives = 25/64 (39%)
Query: 35 YPPPTAKYEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGK 94
+P + + ++++ W T+ A K KF+ KA + + +G K
Sbjct: 31 HPDASVNFSEVSKKCSERWKTMSAKEKG---KFEDMAKADKARYEREMKTYIPPKGETKK 87
Query: 95 VIRD 98
+D
Sbjct: 88 KFKD 91
>UNIPROTKB|D4A9T3 [details] [associations]
symbol:D4A9T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564375
Ensembl:ENSRNOT00000044787 Uniprot:D4A9T3
Length = 184
Score = 126 (49.4 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>RGD|1559962 [details] [associations]
symbol:RGD1559962 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074365 Ncbi:XP_001074365
Length = 209
Score = 129 (50.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +EH ++K + G +KK+G +WS + +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 305 DKERYKSEMLEYRSSYDSTV 324
KE Y+ ++ YR+ S V
Sbjct: 151 LKEEYEKDIAAYRAKGKSEV 170
>UNIPROTKB|E9PES6 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00411540
ProteinModelPortal:E9PES6 SMR:E9PES6 Ensembl:ENST00000430118
ArrayExpress:E9PES6 Bgee:E9PES6 Uniprot:E9PES6
Length = 153
Score = 115 (45.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E ++K G ++KK+G +W+NL ++EKQ Y K K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAK 148
Query: 305 DKERY 309
KE+Y
Sbjct: 149 LKEKY 153
>SGD|S000006256 [details] [associations]
symbol:NHP6A "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
III transcriptional preinitiation complex assembly"
evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
Length = 93
Score = 115 (45.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 30/78 (38%), Positives = 42/78 (53%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLK---PHY-YGQEKAISKKIGVLWSNLTEAEKQVYQEK 301
DP+ PK S Y FF E+ ++ P +GQ + KK+G W LT EKQ Y+ K
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDITFGQ---VGKKLGEKWKALTPEEKQPYEAK 73
Query: 302 GLKDKERYKSEMLEYRSS 319
DK+RY+SE Y ++
Sbjct: 74 AQADKKRYESEKELYNAT 91
>ZFIN|ZDB-GENE-030131-341 [details] [associations]
symbol:hmgb1a "high-mobility group box 1a"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
Length = 205
Score = 122 (48.0 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E ++K G ++K++G +W+ ++ EKQ Y++K K
Sbjct: 90 DPNAPKRPPSAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWNKISSEEKQPYEKKAAK 149
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YRS
Sbjct: 150 LKEKYEKDIAAYRS 163
Score = 39 (18.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 35 YPPPTAKYEDIAQSSDLFWATLEAFHKS-FGDKFKV 69
+P T + + ++ W T+ A K F D K+
Sbjct: 30 HPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKL 65
>ASPGD|ASPL0000037691 [details] [associations]
symbol:AN2885 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
Length = 106
Score = 114 (45.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S Y FF ++ +++ G + K +G W +L++ E++ Y++K
Sbjct: 23 DPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLSDKERKPYEDKAAA 82
Query: 305 DKERYKSEMLEYRS 318
DK+RY+ E Y++
Sbjct: 83 DKKRYEDEKAAYKA 96
>WB|WBGene00000476 [details] [associations]
symbol:cfi-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0045165 "cell fate commitment" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0005634 GO:GO:0006355
GO:GO:0030182 GO:GO:0003677 GO:GO:0006351 GO:GO:0045165
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
eggNOG:NOG327790 InterPro:IPR023334 PROSITE:PS51486 HSSP:Q24573
EMBL:AF487547 EMBL:Z81128 EMBL:AL023824 EMBL:Z81033 PIR:T25159
RefSeq:NP_492644.2 UniGene:Cel.180 ProteinModelPortal:O02326
SMR:O02326 PaxDb:O02326 EnsemblMetazoa:T23D8.8 GeneID:188793
KEGG:cel:CELE_T23D8.8 UCSC:T23D8.8 CTD:188793 WormBase:T23D8.8
HOGENOM:HOG000017380 InParanoid:O02326 OMA:YDEENTN NextBio:940112
Uniprot:O02326
Length = 467
Score = 136 (52.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL+ L+ V GGL ++I + W+E+ N P++ITSA+F LR Y
Sbjct: 204 RIPIMAKQVLDLYELYRLVVQHGGLVEIINKKLWREITKGLNLPSSITSAAFTLRTQYQK 263
Query: 128 LLYHFE 133
LY +E
Sbjct: 264 YLYDYE 269
>UNIPROTKB|F1NPU8 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IEA] [GO:0032075 "positive regulation of
nuclease activity" evidence=IEA] [GO:0042056 "chemoattractant
activity" evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0045654 "positive regulation of
megakaryocyte differentiation" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0050786 "RAGE receptor binding"
evidence=IEA] [GO:0060326 "cell chemotaxis" evidence=IEA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0048471 GO:GO:0045892 GO:GO:0005615 GO:GO:0043234
GO:GO:0005730 GO:GO:0003684 GO:GO:0001938 GO:GO:0045944
GO:GO:0003700 GO:GO:0048545 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0045648 GO:GO:0045654 GO:GO:0060326 GO:GO:0000793
GO:GO:0042056 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GeneTree:ENSGT00560000076717 GO:GO:0006288 OMA:KIKNDHP
IPI:IPI00579203 EMBL:AADN02008951 Ensembl:ENSGALT00000017483
Uniprot:F1NPU8
Length = 207
Score = 127 (49.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +EH ++K + G +KK+G +WS + +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 305 DKERYKSEMLEYRSSYDS 322
KE+Y+ ++ YR+ S
Sbjct: 151 LKEKYEKDIAAYRAKSKS 168
>ZFIN|ZDB-GENE-080220-35 [details] [associations]
symbol:arid1aa "AT rich interactive domain 1Aa
(SWI-like)" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0030246
"carbohydrate binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 ZFIN:ZDB-GENE-080220-35 GO:GO:0003677
GO:GO:0005622 Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031
SUPFAM:SSF46774 GeneTree:ENSGT00550000074575 EMBL:BX649265
EMBL:CR524825 IPI:IPI00934197 Ensembl:ENSDART00000135930
ArrayExpress:F1QMS8 Bgee:F1QMS8 Uniprot:F1QMS8
Length = 2286
Score = 143 (55.4 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 47/132 (35%), Positives = 67/132 (50%)
Query: 50 DLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFN 109
D + A +E K+ G +P VG K LDL RL++ V GGL +V ++++W+E+ N
Sbjct: 996 DRYLAFIE--EKAMG-MTNLPAVGRKPLDLFRLYMSVKEIGGLTQVNKNKKWRELATNLN 1052
Query: 110 FPTTITSASFVLRKYYLSLLYHFEQVYYFRREAPSSSMPDAVSGSSLDNGSASPEEGSTI 169
T+ ++AS L+K Y+ LY FE R E P PD +SG DN P+ I
Sbjct: 1053 VGTSSSAASS-LKKQYIQCLYAFE-CKIERGEDPP---PDIMSG---DNKKNQPK----I 1100
Query: 170 NQLGSQGSSKLQ 181
GS LQ
Sbjct: 1101 QPPSPAGSGSLQ 1112
>RGD|1585821 [details] [associations]
symbol:LOC680968 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001059688 Ncbi:XP_001059688
Length = 213
Score = 126 (49.4 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>RGD|1596979 [details] [associations]
symbol:LOC678705 "hypothetical protein LOC678705" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001053005
Ncbi:XP_001053005
Length = 214
Score = 126 (49.4 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEIWNNTAADDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>FB|FBgn0004795 [details] [associations]
symbol:retn "retained" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0003677 "DNA binding"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=NAS;IMP] [GO:0070491 "repressing transcription
factor binding" evidence=IPI] [GO:0000976 "transcription regulatory
region sequence-specific DNA binding" evidence=IDA] [GO:0009952
"anterior/posterior pattern specification" evidence=IMP]
[GO:0009880 "embryonic pattern specification" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=NAS] [GO:0007435 "salivary gland morphogenesis"
evidence=NAS] [GO:0042063 "gliogenesis" evidence=IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0007431 "salivary gland development" evidence=NAS] [GO:0045924
"regulation of female receptivity" evidence=IMP] [GO:0007411 "axon
guidance" evidence=IMP] [GO:0008049 "male courtship behavior"
evidence=IMP] InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011
SMART:SM00501 EMBL:AE013599 GO:GO:0005634 GO:GO:0007411
GO:GO:0045893 GO:GO:0009952 GO:GO:0007435 GO:GO:0048477
GO:GO:0003700 GO:GO:0006351 GO:GO:0000122 GO:GO:0007517
GO:GO:0045924 GO:GO:0008049 GO:GO:0000976 GO:GO:0009880
GO:GO:0042063 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 eggNOG:NOG327790 InterPro:IPR023334
PROSITE:PS51486 EMBL:U62542 EMBL:AY118955 PIR:JC6093
RefSeq:NP_476864.2 RefSeq:NP_788434.1 UniGene:Dm.20640 PDB:1C20
PDB:1KQQ PDBsum:1C20 PDBsum:1KQQ ProteinModelPortal:Q24573
SMR:Q24573 STRING:Q24573 PaxDb:Q24573 EnsemblMetazoa:FBtr0072073
GeneID:45976 KEGG:dme:Dmel_CG5403 CTD:56729 FlyBase:FBgn0004795
InParanoid:Q24573 OMA:MEYLQLI OrthoDB:EOG4C2FTG PhylomeDB:Q24573
EvolutionaryTrace:Q24573 GenomeRNAi:45976 NextBio:838560
Bgee:Q24573 GermOnline:CG5403 Uniprot:Q24573
Length = 911
Score = 137 (53.3 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + LDL+ L+ V +RGGL VI + W+E++ + P++ITSA+F LR Y+
Sbjct: 316 RLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMK 375
Query: 128 LLYHFE 133
LY +E
Sbjct: 376 YLYPYE 381
>UNIPROTKB|P10103 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9913
"Bos taurus" [GO:0050918 "positive chemotaxis" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0033151 "V(D)J
recombination" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=NAS] [GO:0042393 "histone binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0001773 "myeloid dendritic
cell activation" evidence=IDA] [GO:0042056 "chemoattractant
activity" evidence=IDA] [GO:0002407 "dendritic cell chemotaxis"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043280 "positive regulation of cysteine-type endopeptidase
activity involved in apoptotic process" evidence=IEA] [GO:0043065
"positive regulation of apoptotic process" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0009986
GO:GO:0005730 GO:GO:0002437 GO:GO:0003684 GO:GO:0045944
GO:GO:0003700 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0043065 GO:GO:0003690 GO:GO:0003697 GO:GO:0043280
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 EMBL:X12796 EMBL:BT030587 EMBL:BC102929
EMBL:M26110 IPI:IPI00710114 PIR:S01947 RefSeq:NP_788785.1
UniGene:Bt.49650 ProteinModelPortal:P10103 SMR:P10103 STRING:P10103
PRIDE:P10103 Ensembl:ENSBTAT00000024094 GeneID:282691
KEGG:bta:282691 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 InParanoid:P10103 NextBio:20806359 GO:GO:0006288
Uniprot:P10103
Length = 215
Score = 126 (49.4 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>UNIPROTKB|Q6YKA4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0043388 "positive regulation of
DNA binding" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0006288 "base-excision
repair, DNA ligation" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0003700 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
GO:GO:0043280 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:AY135519 EMBL:AY135521
RefSeq:NP_001002937.1 UniGene:Cfa.416 ProteinModelPortal:Q6YKA4
SMR:Q6YKA4 STRING:Q6YKA4 PRIDE:Q6YKA4 Ensembl:ENSCAFT00000010639
GeneID:403170 KEGG:cfa:403170 InParanoid:Q6YKA4 NextBio:20816914
Uniprot:Q6YKA4
Length = 215
Score = 126 (49.4 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>UNIPROTKB|P09429 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0001654 "eye development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0010858
"calcium-dependent protein kinase regulator activity" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0030324 "lung development" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0045639 "positive regulation of
myeloid cell differentiation" evidence=IEA] [GO:0045819 "positive
regulation of glycogen catabolic process" evidence=IEA] [GO:0051384
"response to glucocorticoid stimulus" evidence=IEA] [GO:2000426
"negative regulation of apoptotic cell clearance" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0031175 "neuron projection development" evidence=ISS]
[GO:0050786 "RAGE receptor binding" evidence=ISS] [GO:0043388
"positive regulation of DNA binding" evidence=IDA] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IDA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IDA] [GO:0005125 "cytokine activity"
evidence=ISS] [GO:0001773 "myeloid dendritic cell activation"
evidence=ISS] [GO:0002407 "dendritic cell chemotaxis" evidence=ISS]
[GO:0042056 "chemoattractant activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=ISS] [GO:0009986 "cell surface" evidence=IDA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEP] [GO:0005615 "extracellular space" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS;IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0017053 "transcriptional repressor complex"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0070491
"repressing transcription factor binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006309 "apoptotic DNA fragmentation"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006921 "cellular component disassembly involved in execution
phase of apoptosis" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0050918 "positive chemotaxis"
evidence=ISS] Reactome:REACT_578 InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
Reactome:REACT_6900 GO:GO:0005615 GO:GO:0005654 GO:GO:0009986
GO:GO:0002437 GO:GO:0003684 GO:GO:0030324 EMBL:CH471075
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0045087
GO:GO:0003700 GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0003690 GO:GO:0003697
GO:GO:0043280 GO:GO:0045819 GO:GO:0005125 GO:GO:0006309
GO:GO:0000793 Pathway_Interaction_DB:amb2_neutrophils_pathway
GO:GO:0042056 GO:GO:0031175 GO:GO:0001654 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 GO:GO:0045639 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861
OMA:GEDAMRK KO:K10802 GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000
GO:GO:0006288 EMBL:X12597 EMBL:U51677 EMBL:D63874 EMBL:EF157968
EMBL:AY377859 EMBL:AK291494 EMBL:AK122825 EMBL:CR749614
EMBL:CR456863 EMBL:BT006940 EMBL:BT020159 EMBL:EU012027
EMBL:AL353648 EMBL:BC003378 EMBL:BC030981 EMBL:BC066889
EMBL:BC067732 EMBL:BC141844 IPI:IPI00419258 PIR:S02826
RefSeq:NP_002119.1 UniGene:Hs.434102 UniGene:Hs.593339
UniGene:Hs.596078 UniGene:Hs.741195 PDB:2LY4 PDB:2YRQ PDBsum:2LY4
PDBsum:2YRQ ProteinModelPortal:P09429 SMR:P09429 DIP:DIP-24195N
IntAct:P09429 MINT:MINT-153055 STRING:P09429 PhosphoSite:P09429
DMDM:123369 DOSAC-COBS-2DPAGE:P09429 PaxDb:P09429
PeptideAtlas:P09429 PRIDE:P09429 DNASU:3146 Ensembl:ENST00000339872
Ensembl:ENST00000341423 Ensembl:ENST00000399494
Ensembl:ENST00000405805 GeneID:3146 KEGG:hsa:3146 UCSC:uc001usx.3
GeneCards:GC13M031032 H-InvDB:HIX0030745 HGNC:HGNC:4983
HPA:CAB005873 HPA:HPA003506 MIM:163905 neXtProt:NX_P09429
PharmGKB:PA188 InParanoid:P09429 PhylomeDB:P09429 ChiTaRS:HMGB1
EvolutionaryTrace:P09429 GenomeRNAi:3146 NextBio:12470
ArrayExpress:P09429 Bgee:P09429 CleanEx:HS_HMGB1
Genevestigator:P09429 GermOnline:ENSG00000189403 GO:GO:0010858
GO:GO:0050786 GO:GO:2000426 Uniprot:P09429
Length = 215
Score = 126 (49.4 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>UNIPROTKB|F2Z594 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:2000426 "negative regulation of apoptotic cell
clearance" evidence=IEA] [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0051384 "response to
glucocorticoid stimulus" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045639 "positive regulation
of myeloid cell differentiation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0043280
"positive regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0043065 "positive
regulation of apoptotic process" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0010858 "calcium-dependent protein kinase regulator activity"
evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005125 "cytokine activity" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0002437 "inflammatory response to
antigenic stimulus" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
GO:GO:0017053 GO:GO:0005615 GO:GO:0009986 GO:GO:0005730
GO:GO:0002437 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0003700 GO:GO:0045860
GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280 GO:GO:0045819
GO:GO:0000793 GO:GO:0001654 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:CU062617 ProteinModelPortal:F2Z594 SMR:F2Z594
PRIDE:F2Z594 Ensembl:ENSSSCT00000010221 Uniprot:F2Z594
Length = 215
Score = 126 (49.4 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>RGD|1591683 [details] [associations]
symbol:LOC681718 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1591683
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076717 IPI:IPI00767302
Ensembl:ENSRNOT00000045504 OMA:NNTASED ArrayExpress:F1MA29
Uniprot:F1MA29
Length = 215
Score = 126 (49.4 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>RGD|2802 [details] [associations]
symbol:Hmgb1 "high mobility group box 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000400 "four-way
junction DNA binding" evidence=IDA] [GO:0000401 "open form four-way
junction DNA binding" evidence=IDA] [GO:0000402 "crossed form
four-way junction DNA binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=IMP] [GO:0001654 "eye development" evidence=ISO] [GO:0001934
"positive regulation of protein phosphorylation" evidence=ISO]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=IDA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=ISO] [GO:0003681 "bent DNA binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005125 "cytokine activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005615
"extracellular space" evidence=ISO;IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006288 "base-excision repair, DNA
ligation" evidence=ISO] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0006935 "chemotaxis"
evidence=IDA] [GO:0007399 "nervous system development" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0008097 "5S rRNA
binding" evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=ISO;IDA] [GO:0008156 "negative regulation of DNA
replication" evidence=IDA] [GO:0008201 "heparin binding"
evidence=IDA;TAS] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0008301 "DNA binding, bending"
evidence=ISO;IDA] [GO:0009408 "response to heat" evidence=IEP]
[GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0009986
"cell surface" evidence=ISO] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=ISO] [GO:0010942 "positive
regulation of cell death" evidence=IMP] [GO:0010976 "positive
regulation of neuron projection development" evidence=IMP]
[GO:0014911 "positive regulation of smooth muscle cell migration"
evidence=IMP] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISO]
[GO:0030295 "protein kinase activator activity" evidence=ISO]
[GO:0030324 "lung development" evidence=ISO] [GO:0030335 "positive
regulation of cell migration" evidence=IDA] [GO:0031175 "neuron
projection development" evidence=IGI] [GO:0031532 "actin cytoskeleton
reorganization" evidence=IMP] [GO:0032392 "DNA geometric change"
evidence=IDA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEP] [GO:0032868 "response to insulin stimulus"
evidence=IEP] [GO:0033034 "positive regulation of myeloid cell
apoptotic process" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=ISO] [GO:0034341 "response to interferon-gamma"
evidence=IMP] [GO:0042277 "peptide binding" evidence=IDA] [GO:0042493
"response to drug" evidence=IEP] [GO:0043005 "neuron projection"
evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
evidence=ISO;IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=ISO]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=ISO] [GO:0045663 "positive regulation of myoblast
differentiation" evidence=IMP] [GO:0045819 "positive regulation of
glycogen catabolic process" evidence=ISO] [GO:0045931 "positive
regulation of mitotic cell cycle" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046983 "protein dimerization activity"
evidence=IDA] [GO:0050727 "regulation of inflammatory response"
evidence=IDA] [GO:0050786 "RAGE receptor binding" evidence=IMP;IPI]
[GO:0050831 "male-specific defense response to bacterium"
evidence=IDA] [GO:0050930 "induction of positive chemotaxis"
evidence=IDA] [GO:0051384 "response to glucocorticoid stimulus"
evidence=ISO] [GO:0051450 "myoblast proliferation" evidence=IMP]
[GO:0051861 "glycolipid binding" evidence=IDA] [GO:0070491
"repressing transcription factor binding" evidence=ISO] [GO:0071347
"cellular response to interleukin-1" evidence=IEP] [GO:0017053
"transcriptional repressor complex" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:2802
GO:GO:0005634 GO:GO:0005737 GO:GO:0005694 GO:GO:0005615 GO:GO:0010976
GO:GO:0042493 GO:GO:0045931 GO:GO:0007623 GO:GO:0009749 GO:GO:0032496
GO:GO:0008201 GO:GO:0009408 GO:GO:0006935 GO:GO:0032868 GO:GO:0046983
eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031532 GO:GO:0050727
GO:GO:0042277 GO:GO:0003690 GO:GO:0003697 GO:GO:0000902 GO:GO:0033034
GO:GO:0005125 GO:GO:0008134 GO:GO:0031175 GO:GO:0071347 GO:GO:0050930
GO:GO:0008156 GO:GO:0034341 GO:GO:0002053 GO:GO:0014911 GO:GO:0045663
GO:GO:0008097 GO:GO:0003681 GO:GO:0051861 Pfam:PF09011 GO:GO:0051450
OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802 CTD:3146
HOVERGEN:HBG009000 GO:GO:0050786 EMBL:M64986 EMBL:Y00463
EMBL:AF275734 EMBL:BC061779 EMBL:BC081839 EMBL:BC088402
IPI:IPI00555214 PIR:A41175 RefSeq:NP_037095.1 UniGene:Rn.144565
UniGene:Rn.15185 UniGene:Rn.4121 PDB:1AAB PDB:1CKT PDB:1HME PDB:1HMF
PDB:2GZK PDBsum:1AAB PDBsum:1CKT PDBsum:1HME PDBsum:1HMF PDBsum:2GZK
ProteinModelPortal:P63159 SMR:P63159 STRING:P63159 PhosphoSite:P63159
PRIDE:P63159 GeneID:25459 KEGG:rno:25459 InParanoid:P63159
EvolutionaryTrace:P63159 NextBio:606729 ArrayExpress:P63159
Genevestigator:P63159 GermOnline:ENSRNOG00000030351 GO:GO:0000402
GO:GO:0000401 GO:GO:0032392 GO:GO:0050831 Uniprot:P63159
Length = 215
Score = 126 (49.4 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
symbol:MAL8P1.72 "high mobility group protein,
putative" species:5833 "Plasmodium falciparum" [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
Uniprot:Q8IB14
Length = 99
Score = 111 (44.1 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 26/75 (34%), Positives = 35/75 (46%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARL---KPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKG 302
DP PK S Y F+ + + KP + K IG W L+ A+K Y++K
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKA 79
Query: 303 LKDKERYKSEMLEYR 317
DK RY E+ EYR
Sbjct: 80 QLDKVRYSKEIEEYR 94
>UNIPROTKB|Q8IB14 [details] [associations]
symbol:PfHMGB2 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0006359 "regulation of
transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
Length = 99
Score = 111 (44.1 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 26/75 (34%), Positives = 35/75 (46%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARL---KPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKG 302
DP PK S Y F+ + + KP + K IG W L+ A+K Y++K
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKA 79
Query: 303 LKDKERYKSEMLEYR 317
DK RY E+ EYR
Sbjct: 80 QLDKVRYSKEIEEYR 94
>UNIPROTKB|P26584 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0048471
GO:GO:0006357 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:M83235 EMBL:M80574 IPI:IPI00579203
PIR:JC1114 PIR:JC1129 RefSeq:NP_990817.1 UniGene:Gga.4061
ProteinModelPortal:P26584 SMR:P26584 STRING:P26584 PRIDE:P26584
GeneID:396482 KEGG:gga:396482 eggNOG:NOG320947 InParanoid:P26584
NextBio:20816521 Uniprot:P26584
Length = 207
Score = 125 (49.1 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +EH ++K + G +KK+G +WS +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAK 150
Query: 305 DKERYKSEMLEYRSSYDS 322
KE+Y+ ++ YR+ S
Sbjct: 151 LKEKYEKDIAAYRAKSKS 168
>UNIPROTKB|E1BMK2 [details] [associations]
symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
OMA:EXDIAAY Uniprot:E1BMK2
Length = 215
Score = 125 (49.1 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAVDDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>RGD|1586285 [details] [associations]
symbol:LOC691220 "hypothetical protein LOC691220" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 124 (48.7 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIPAYRA 164
>RGD|1588313 [details] [associations]
symbol:LOC679451 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 124 (48.7 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIPAYRA 164
>UNIPROTKB|F1N927 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:AADN02005232 IPI:IPI00818014
Ensembl:ENSGALT00000036454 ArrayExpress:F1N927 Uniprot:F1N927
Length = 214
Score = 123 (48.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>UNIPROTKB|H0Y3S9 [details] [associations]
symbol:ARID1B "AT-rich interactive domain-containing
protein 1B" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0003677 GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774
EMBL:AL355297 EMBL:AL049820 EMBL:AL162578 EMBL:AL591545
HGNC:HGNC:18040 EMBL:AL136091 Ensembl:ENST00000400790 Bgee:H0Y3S9
Uniprot:H0Y3S9
Length = 273
Score = 126 (49.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 144 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQY 202
Query: 129 LYHFE 133
L+ FE
Sbjct: 203 LFAFE 207
>UNIPROTKB|J9NTN3 [details] [associations]
symbol:ARID1A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0003677
GO:GO:0005622 Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031
SUPFAM:SSF46774 GeneTree:ENSGT00550000074575 EMBL:AAEX03001719
Ensembl:ENSCAFT00000044234 Uniprot:J9NTN3
Length = 1899
Score = 137 (53.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 36/96 (37%), Positives = 55/96 (57%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL+RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 658 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQC 716
Query: 129 LYHFEQVYYFRREAPSSSMPDAVSGSSLDNGSASPE 164
LY FE R E P PD + S D+ + P+
Sbjct: 717 LYAFE-CKIERGEDPP---PDIFAAS--DSKKSQPK 746
>UNIPROTKB|Q9YH06 [details] [associations]
symbol:HMG1 "High mobility group 1 protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 HSSP:P07155 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 GO:GO:0010858 GO:GO:2000426
EMBL:AADN02005232 EMBL:Y17968 EMBL:AJ851648 IPI:IPI00595982
RefSeq:NP_990233.1 UniGene:Gga.4638 SMR:Q9YH06 STRING:Q9YH06
Ensembl:ENSGALT00000027593 GeneID:395724 KEGG:gga:395724
InParanoid:Q9YH06 NextBio:20815793 Uniprot:Q9YH06
Length = 215
Score = 123 (48.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>UNIPROTKB|F1N1P2 [details] [associations]
symbol:F1N1P2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02056400
IPI:IPI00904552 Ensembl:ENSBTAT00000020361 Uniprot:F1N1P2
Length = 199
Score = 121 (47.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP PK SG F +E + ++K + G + ++KK+G +W+NL+++EKQ Y K K
Sbjct: 88 DPKAPKRLPSGCLLFCSEFHPKIKSTHPGISIRDVAKKLGEMWNNLSDSEKQPYINKAAK 147
Query: 305 DKERYKSEMLEYRS--SYDST 323
K +Y+ + +++S +D T
Sbjct: 148 LK-KYEKDAADHKSRGKFDGT 167
>SGD|S000002157 [details] [associations]
symbol:NHP6B "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
transcriptional preinitiation complex assembly" evidence=IGI;IDA]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
Length = 99
Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLK---PHY-YGQEKAISKKIGVLWSNLTEAEKQVYQEK 301
DP+ PK S Y FF E+ ++ P +GQ + + +G W LT EKQ Y+ K
Sbjct: 23 DPNAPKRGLSAYMFFANENRDIVRSENPDVTFGQ---VGRILGERWKALTAEEKQPYESK 79
Query: 302 GLKDKERYKSEMLEYRSS 319
DK+RY+SE Y ++
Sbjct: 80 AQADKKRYESEKELYNAT 97
>UNIPROTKB|E2RSH9 [details] [associations]
symbol:ARID1A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0003677
GO:GO:0005622 OMA:GSQYGPQ Gene3D:1.10.150.60 InterPro:IPR021906
Pfam:PF12031 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
EMBL:AAEX03001719 Ensembl:ENSCAFT00000019631 Uniprot:E2RSH9
Length = 2286
Score = 137 (53.3 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 36/96 (37%), Positives = 55/96 (57%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL+RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 1042 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQC 1100
Query: 129 LYHFEQVYYFRREAPSSSMPDAVSGSSLDNGSASPE 164
LY FE R E P PD + S D+ + P+
Sbjct: 1101 LYAFE-CKIERGEDPP---PDIFAAS--DSKKSQPK 1130
>UNIPROTKB|P0C6E5 [details] [associations]
symbol:P0C6E5 "Putative high mobility group protein B3-like
protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC067852 Pfam:PF09011
IPI:IPI00888935 ProteinModelPortal:P0C6E5 SMR:P0C6E5 STRING:P0C6E5
PhosphoSite:P0C6E5 DMDM:205539816 PaxDb:P0C6E5 PRIDE:P0C6E5
neXtProt:NX_P0C6E5 InParanoid:P0C6E5 PhylomeDB:P0C6E5
Genevestigator:P0C6E5 Uniprot:P0C6E5
Length = 187
Score = 119 (46.9 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E + K G ++KK+G +W NL ++EKQ Y + K
Sbjct: 88 DPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAK 147
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ Y+S
Sbjct: 148 LKEKYEKDVAVYKS 161
>UNIPROTKB|P12682 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IDA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793
Pfam:PF09011 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802
GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:M21683
PIR:A28897 RefSeq:NP_001004034.1 UniGene:Ssc.22696
ProteinModelPortal:P12682 SMR:P12682 STRING:P12682 PRIDE:P12682
GeneID:445521 KEGG:ssc:445521 Uniprot:P12682
Length = 215
Score = 121 (47.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +K Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKHPYEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>RGD|1589528 [details] [associations]
symbol:LOC679344 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001054795 Ncbi:XP_001054795
Length = 215
Score = 121 (47.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E++ ++K + G ++KK+G +W+N +KQ ++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>RGD|1592627 [details] [associations]
symbol:LOC685520 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_003749913 Ncbi:XP_003749961
Length = 215
Score = 121 (47.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E++ ++K + G ++KK+G +W+N +KQ ++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>UNIPROTKB|E1B925 [details] [associations]
symbol:ARID1A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0042921
"glucocorticoid receptor signaling pathway" evidence=IEA]
[GO:0030521 "androgen receptor signaling pathway" evidence=IEA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=IEA] [GO:0016922 "ligand-dependent nuclear receptor
binding" evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006337
"nucleosome disassembly" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0042921 GO:GO:0045893 GO:GO:0030521 GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0016514 OMA:GSQYGPQ GO:GO:0030520
GO:GO:0006337 Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031
SUPFAM:SSF46774 GeneTree:ENSGT00550000074575 EMBL:DAAA02006369
EMBL:DAAA02006370 EMBL:DAAA02006371 IPI:IPI01000128
Ensembl:ENSBTAT00000001360 Uniprot:E1B925
Length = 2112
Score = 135 (52.6 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL+RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 869 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQC 927
Query: 129 LYHFE 133
LY FE
Sbjct: 928 LYAFE 932
>MGI|MGI:1935147 [details] [associations]
symbol:Arid1a "AT rich interactive domain 1A (SWI-like)"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006325
"chromatin organization" evidence=IPI] [GO:0006337 "nucleosome
disassembly" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=ISO;IDA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016922 "ligand-dependent nuclear receptor
binding" evidence=ISO] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:0030521 "androgen receptor
signaling pathway" evidence=ISO] [GO:0042921 "glucocorticoid
receptor signaling pathway" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565 "nBAF
complex" evidence=IDA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 MGI:MGI:1935147 GO:GO:0045893
GO:GO:0007399 GO:GO:0030521 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
eggNOG:NOG12793 CTD:8289 HOVERGEN:HBG058196 KO:K11653
OrthoDB:EOG437RD2 ChiTaRS:ARID1A GO:GO:0030520 Gene3D:1.10.150.60
InterPro:IPR021906 Pfam:PF12031 SUPFAM:SSF46774 EMBL:AF268912
EMBL:CR751606 EMBL:BX537327 EMBL:CR925752 EMBL:BC082554
IPI:IPI00127131 IPI:IPI00955140 IPI:IPI00955160 IPI:IPI00974963
RefSeq:NP_001074288.1 UniGene:Mm.22478 ProteinModelPortal:A2BH40
SMR:A2BH40 DIP:DIP-58952N IntAct:A2BH40 MINT:MINT-4301934
STRING:A2BH40 PhosphoSite:A2BH40 PaxDb:A2BH40 PRIDE:A2BH40
Ensembl:ENSMUST00000008024 Ensembl:ENSMUST00000105897 GeneID:93760
KEGG:mmu:93760 UCSC:uc008vdh.1 UCSC:uc008vdj.1
GeneTree:ENSGT00550000074575 HOGENOM:HOG000232161 InParanoid:A2BH40
NextBio:351643 Bgee:A2BH40 Genevestigator:A2BH40 GO:GO:0006325
Uniprot:A2BH40
Length = 2283
Score = 135 (52.6 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL+RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 1042 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQC 1100
Query: 129 LYHFE 133
LY FE
Sbjct: 1101 LYAFE 1105
>UNIPROTKB|O14497 [details] [associations]
symbol:ARID1A "AT-rich interactive domain-containing
protein 1A" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0042921 "glucocorticoid receptor signaling pathway"
evidence=IDA] [GO:0048096 "chromatin-mediated maintenance of
transcription" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA;TAS] [GO:0016514 "SWI/SNF complex" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0030521 "androgen receptor signaling pathway"
evidence=IDA] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=TAS] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IDA] [GO:0016922 "ligand-dependent
nuclear receptor binding" evidence=IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0042921 EMBL:AL034380 GO:GO:0007399 GO:GO:0030521
GO:GO:0003677 EMBL:CH471059 GO:GO:0006357 GO:GO:0006351
GO:GO:0000790 GO:GO:0003713 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 eggNOG:NOG12793 EMBL:AF231056 EMBL:AL512408
EMBL:AF521670 EMBL:AF219114 EMBL:AF265208 EMBL:AB001895
EMBL:AB024075 EMBL:AF268913 EMBL:AK223275 IPI:IPI00642705
IPI:IPI00643722 IPI:IPI00929427 PIR:T00022 RefSeq:NP_006006.3
RefSeq:NP_624361.1 UniGene:Hs.468972 PDB:1RYU PDBsum:1RYU
ProteinModelPortal:O14497 SMR:O14497 DIP:DIP-33016N IntAct:O14497
STRING:O14497 PhosphoSite:O14497 PaxDb:O14497 PRIDE:O14497
Ensembl:ENST00000324856 Ensembl:ENST00000374152
Ensembl:ENST00000457599 GeneID:8289 KEGG:hsa:8289 UCSC:uc001bmt.1
UCSC:uc001bmu.1 UCSC:uc001bmx.1 CTD:8289 GeneCards:GC01P027022
HGNC:HGNC:11110 HPA:CAB016334 HPA:HPA005456 MIM:603024 MIM:614607
neXtProt:NX_O14497 Orphanet:1465 PharmGKB:PA35960
HOVERGEN:HBG058196 InParanoid:O14497 KO:K11653 OMA:GSQYGPQ
OrthoDB:EOG437RD2 PhylomeDB:O14497 ChiTaRS:ARID1A
EvolutionaryTrace:O14497 GenomeRNAi:8289 NextBio:31061
ArrayExpress:O14497 Bgee:O14497 Genevestigator:O14497
GermOnline:ENSG00000117713 GO:GO:0048096 GO:GO:0030520
GO:GO:0006337 GO:GO:0042766 Gene3D:1.10.150.60 InterPro:IPR021906
Pfam:PF12031 SUPFAM:SSF46774 Uniprot:O14497
Length = 2285
Score = 135 (52.6 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL+RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 1041 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQC 1099
Query: 129 LYHFE 133
LY FE
Sbjct: 1100 LYAFE 1104
>RGD|1310500 [details] [associations]
symbol:Arid1a "AT rich interactive domain 1A (SWI-like)"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006325 "chromatin
organization" evidence=ISO] [GO:0006337 "nucleosome disassembly"
evidence=IEA;ISO] [GO:0006338 "chromatin remodeling"
evidence=IEA;ISO] [GO:0016514 "SWI/SNF complex" evidence=IEA;ISO]
[GO:0016922 "ligand-dependent nuclear receptor binding"
evidence=IEA;ISO] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IEA;ISO] [GO:0030521 "androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0042921 "glucocorticoid
receptor signaling pathway" evidence=IEA;ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA;ISO]
[GO:0071564 "npBAF complex" evidence=IEA;ISO] [GO:0071565 "nBAF
complex" evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
RGD:1310500 GO:GO:0042921 GO:GO:0045893 GO:GO:0030521 GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0016514 OrthoDB:EOG437RD2
GO:GO:0030520 GO:GO:0006337 Gene3D:1.10.150.60 InterPro:IPR021906
Pfam:PF12031 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
IPI:IPI00768472 Ensembl:ENSRNOT00000009173 UCSC:RGD:1310500
Uniprot:D4A3E3
Length = 2291
Score = 135 (52.6 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL+RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 1038 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQC 1096
Query: 129 LYHFE 133
LY FE
Sbjct: 1097 LYAFE 1101
>UNIPROTKB|Q5T7C4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:AL353648 UniGene:Hs.434102
UniGene:Hs.593339 UniGene:Hs.596078 UniGene:Hs.741195
HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681 IPI:IPI00644653
SMR:Q5T7C4 Ensembl:ENST00000326004 Ensembl:ENST00000399489
UCSC:uc001usv.3 Uniprot:Q5T7C4
Length = 158
Score = 112 (44.5 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 305 DKERYK 310
KE+Y+
Sbjct: 151 LKEKYE 156
>MGI|MGI:96157 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10090 "Mus
musculus" [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISO]
[GO:0005615 "extracellular space" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IC] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006288 "base-excision
repair, DNA ligation" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0007289 "spermatid
nucleus differentiation" evidence=IMP] [GO:0007399 "nervous system
development" evidence=ISO] [GO:0008289 "lipid binding"
evidence=ISO] [GO:0008301 "DNA binding, bending" evidence=ISO]
[GO:0008584 "male gonad development" evidence=IMP] [GO:0019904
"protein domain specific binding" evidence=IPI] [GO:0031493
"nucleosomal histone binding" evidence=ISO] [GO:0032075 "positive
regulation of nuclease activity" evidence=ISO] [GO:0042056
"chemoattractant activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0043234 "protein
complex" evidence=ISO] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO;IDA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISO] [GO:0045648 "positive regulation
of erythrocyte differentiation" evidence=ISO] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IMP]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0048545 "response to steroid hormone stimulus" evidence=IMP]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive
regulation of DNA metabolic process" evidence=ISO] [GO:0060326
"cell chemotaxis" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:96157 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0043066
GO:GO:0005615 GO:GO:0043234 GO:GO:0005730 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 HOGENOM:HOG000197861 KO:K11295
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:X67668 EMBL:Z46757
EMBL:AF267733 EMBL:AK003773 EMBL:AK008443 EMBL:AK012568
EMBL:AK135296 EMBL:AK135297 EMBL:AK146212 EMBL:BC002050
EMBL:BC046759 EMBL:BC083108 IPI:IPI00462291 PIR:S26062 PIR:S54774
RefSeq:NP_032278.1 UniGene:Mm.279998 UniGene:Mm.470487
UniGene:Mm.490424 ProteinModelPortal:P30681 SMR:P30681 DIP:DIP-899N
MINT:MINT-4097539 STRING:P30681 PhosphoSite:P30681 PaxDb:P30681
PRIDE:P30681 Ensembl:ENSMUST00000067925 GeneID:97165 KEGG:mmu:97165
UCSC:uc009lsx.2 InParanoid:P30681 NextBio:352589 Bgee:P30681
CleanEx:MM_HMGB2 Genevestigator:P30681
GermOnline:ENSMUSG00000054717 Uniprot:P30681
Length = 210
Score = 119 (46.9 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G +KK+G +WS + +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>RGD|1563668 [details] [associations]
symbol:RGD1563668 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074778 Ncbi:XP_001074778
Length = 211
Score = 119 (46.9 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK+ S + F +E+ ++K + G + KK+G +W+N +KQ Y++ K
Sbjct: 91 DPNAPKTPPSAFFLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWTNTAADDKQPYEKMAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>ZFIN|ZDB-GENE-030131-5725 [details] [associations]
symbol:arid1ab "AT rich interactive domain 1Ab
(SWI-like)" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
ZFIN:ZDB-GENE-030131-5725 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 EMBL:CABZ01050711 EMBL:CT027837
IPI:IPI00485842 Ensembl:ENSDART00000084272 Bgee:F1RE50
Uniprot:F1RE50
Length = 2135
Score = 133 (51.9 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 58 AFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSA 117
A K+ G +P VG K LDL RL+V V GGL +V ++++W+E+ N T+ ++A
Sbjct: 982 AEEKAMGMS-NLPAVGRKPLDLFRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAA 1040
Query: 118 SFVLRKYYLSLLYHFE 133
S L+K Y+ LY FE
Sbjct: 1041 SS-LKKQYIQCLYAFE 1055
>DICTYBASE|DDB_G0275333 [details] [associations]
symbol:DDB_G0275333 "ARID/BRIGHT DNA binding
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR001606 InterPro:IPR025718 Pfam:PF01388 Pfam:PF13867
PROSITE:PS51011 SMART:SM00501 dictyBase:DDB_G0275333 GO:GO:0005634
GO:GO:0003677 EMBL:AAFI02000013 Gene3D:1.10.150.60 SUPFAM:SSF46774
eggNOG:NOG327790 RefSeq:XP_643660.1 ProteinModelPortal:Q553R0
EnsemblProtists:DDB0216390 GeneID:8619925 KEGG:ddi:DDB_G0275333
InParanoid:Q553R0 Uniprot:Q553R0
Length = 478
Score = 124 (48.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
K+P K L+L++L+ V SRGGL VI ++ W+++ T A F LR +YL
Sbjct: 65 KIPIFDHKELNLYKLYNCVISRGGLEAVIDNKLWRQITTDLAVDPERTDAGFRLRIHYLK 124
Query: 128 LLYHFEQVYYFRRE 141
LY +E+ +Y + E
Sbjct: 125 YLYPYERKHYLKIE 138
>UNIPROTKB|F1SB28 [details] [associations]
symbol:ARID1B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003677 GO:GO:0016514 Gene3D:1.10.150.60 InterPro:IPR021906
Pfam:PF12031 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
EMBL:CU407155 Ensembl:ENSSSCT00000004493 OMA:KMAGADP Uniprot:F1SB28
Length = 1292
Score = 129 (50.5 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 131 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATTLNVGTSSSAASS-LKKQYIQY 189
Query: 129 LYHFE 133
L+ FE
Sbjct: 190 LFAFE 194
>UNIPROTKB|H0Y2R3 [details] [associations]
symbol:ARID1B "AT-rich interactive domain-containing
protein 1B" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:AL355297
EMBL:AL049820 EMBL:AL162578 EMBL:AL591545 HGNC:HGNC:18040
EMBL:AL136091 Ensembl:ENST00000319584 Bgee:H0Y2R3 Uniprot:H0Y2R3
Length = 728
Score = 126 (49.4 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 552 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQY 610
Query: 129 LYHFE 133
L+ FE
Sbjct: 611 LFAFE 615
>UNIPROTKB|G4N2P7 [details] [associations]
symbol:MGG_04878 "Lid2 complex component lid2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001841
InterPro:IPR001606 InterPro:IPR001965 InterPro:IPR003347
InterPro:IPR004198 InterPro:IPR013637 InterPro:IPR019787
Pfam:PF00628 Pfam:PF01388 Pfam:PF02373 Pfam:PF02928 Pfam:PF08429
PROSITE:PS50016 PROSITE:PS51011 PROSITE:PS51184 SMART:SM00184
SMART:SM00249 SMART:SM00501 SMART:SM00558 GO:GO:0005634
EMBL:CM001233 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0016706 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.150.60 SUPFAM:SSF46774
InterPro:IPR003349 PROSITE:PS51183 Pfam:PF02375 SMART:SM00545
KO:K11446 RefSeq:XP_003712359.1 EnsemblFungi:MGG_04878T0
GeneID:2675627 KEGG:mgr:MGG_04878 Uniprot:G4N2P7
Length = 1755
Score = 130 (50.8 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 39/141 (27%), Positives = 62/141 (43%)
Query: 56 LEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTIT 115
L FH G + ++P V K LDL++L V +RGG KV + ++W E+ + I
Sbjct: 170 LVKFHNQNGKEIRLPYVDKKPLDLYKLKKAVENRGGFDKVCKSKKWAEIGRDLGYSGKIM 229
Query: 116 SA-SFVLRKYYLSLLYHFEQVYYFRREAPSSSMPDAVSGSSLDNGSASPEEGSTINQLGS 174
S+ S L+ Y L +E+ R + G + + SP + S IN S
Sbjct: 230 SSLSTSLKNSYQKFLCPYEEYLRAARPGVHQQLELEYGGPLTPSPAPSPMKKSNINTPAS 289
Query: 175 Q--GSSKLQIGCSVSGVIDGK 193
GS Q ++ ++GK
Sbjct: 290 ARAGSPTRQASDALQATVNGK 310
>CGD|CAF0007020 [details] [associations]
symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 101 (40.6 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP PK + S Y FF E+ ++ G + K +G W L +K Y+ K
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSEDKLPYENKAEA 74
Query: 305 DKERYKSEMLEY 316
DK+RY+ E EY
Sbjct: 75 DKKRYEKEKAEY 86
>UNIPROTKB|Q9UVL1 [details] [associations]
symbol:NHP6 "Non-histone chromosomal protein 6"
species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 101 (40.6 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP PK + S Y FF E+ ++ G + K +G W L +K Y+ K
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSEDKLPYENKAEA 74
Query: 305 DKERYKSEMLEY 316
DK+RY+ E EY
Sbjct: 75 DKKRYEKEKAEY 86
>TAIR|locus:2037345 [details] [associations]
symbol:AT1G20910 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA;TAS] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
InterPro:IPR002068 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
InterPro:IPR008978 SUPFAM:SSF49764 PROSITE:PS01031
Gene3D:1.10.150.60 SUPFAM:SSF46774 ProtClustDB:CLSN2680092
EMBL:AC007369 EMBL:AB493470 IPI:IPI00543271 PIR:G86341
RefSeq:NP_173515.2 UniGene:At.43690 ProteinModelPortal:C0SUW7
SMR:C0SUW7 PaxDb:C0SUW7 PRIDE:C0SUW7 EnsemblPlants:AT1G20910.1
GeneID:838684 KEGG:ath:AT1G20910 TAIR:At1g20910 eggNOG:NOG284320
HOGENOM:HOG000239411 OMA:ANNGHGM PhylomeDB:C0SUW7
Genevestigator:C0SUW7 Uniprot:C0SUW7
Length = 398
Score = 122 (48.0 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 35/118 (29%), Positives = 60/118 (50%)
Query: 52 FWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFP 111
F +EAF+K +FK P G+ L++ +L+ V + GG V ++ W++V FN P
Sbjct: 112 FLREVEAFYKESFLEFKPPKFYGQPLNILKLWRAVVNLGGYEVVTTNKLWRQVGESFNPP 171
Query: 112 TTITSASFVLRKYYLSLLYHFEQVYYFRREA--PSSSMPDAVSGSSLDNGSASPEEGS 167
T T+ S+ R +Y L +E+ E P S++ + SS++ +S +GS
Sbjct: 172 KTCTTVSYTFRNFYEKALLEYEKCLRNNGELNLPGSTL---ILSSSVEKEPSS-HQGS 225
>UNIPROTKB|F1P479 [details] [associations]
symbol:Gga.35990 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003677 GO:GO:0005622 Gene3D:1.10.150.60 InterPro:IPR021906
Pfam:PF12031 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
EMBL:AADN02025422 EMBL:AADN02025423 IPI:IPI00814474
Ensembl:ENSGALT00000022247 ArrayExpress:F1P479 Uniprot:F1P479
Length = 1614
Score = 129 (50.5 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 410 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATTLNVGTSSSAASS-LKKQYIQY 468
Query: 129 LYHFE 133
L+ FE
Sbjct: 469 LFAFE 473
>UNIPROTKB|F1NKI7 [details] [associations]
symbol:Gga.35990 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003677 GO:GO:0005622 Gene3D:1.10.150.60 InterPro:IPR021906
Pfam:PF12031 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
OMA:PIGIQGR EMBL:AADN02025422 EMBL:AADN02025423 IPI:IPI00818092
Ensembl:ENSGALT00000037541 ArrayExpress:F1NKI7 Uniprot:F1NKI7
Length = 1618
Score = 129 (50.5 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 410 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATTLNVGTSSSAASS-LKKQYIQY 468
Query: 129 LYHFE 133
L+ FE
Sbjct: 469 LFAFE 473
>UNIPROTKB|B2RPK0 [details] [associations]
symbol:HMGB1P1 "Putative high mobility group protein
B1-like 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 EMBL:AL160176 UniGene:Hs.131543
EMBL:BC137482 EMBL:BC137483 IPI:IPI00022796
ProteinModelPortal:B2RPK0 SMR:B2RPK0 STRING:B2RPK0 PaxDb:B2RPK0
PRIDE:B2RPK0 GeneCards:GC20M056062 HGNC:HGNC:4993
neXtProt:NX_B2RPK0 InParanoid:B2RPK0 OrthoDB:EOG4KWJV1
PhylomeDB:B2RPK0 NextBio:39267 Genevestigator:B2RPK0 Uniprot:B2RPK0
Length = 211
Score = 116 (45.9 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 22/74 (29%), Positives = 44/74 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E++ ++K + G ++KK+G +W+N +KQ ++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ Y++
Sbjct: 151 LKEKYEKDIAAYQA 164
>RGD|1587112 [details] [associations]
symbol:Hmg1l1 "high-mobility group (nonhistone chromosomal)
protein 1-like 1" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1587112
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564933 RefSeq:XP_003748829.1
RefSeq:XP_003753270.1 Ensembl:ENSRNOT00000047765 GeneID:100909581
KEGG:rno:100909581 OMA:KEYHSAR Uniprot:D3ZL49
Length = 215
Score = 116 (45.9 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y + K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNTAADDKQPYGKMAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>UNIPROTKB|H9KYS8 [details] [associations]
symbol:ARID1A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001606 InterPro:IPR016024
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 EMBL:AADN02051965 EMBL:AADN02051964
Ensembl:ENSGALT00000000486 Uniprot:H9KYS8
Length = 1366
Score = 134 (52.2 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL+RL++ V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 132 LPAVGRKPLDLYRLYISVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQC 190
Query: 129 LYHFE 133
LY FE
Sbjct: 191 LYAFE 195
Score = 38 (18.4 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 146 SMPDAVSGSSLDNGSASPEEGSTI---NQLGSQGSSKLQIGCSVSG 188
+MP + G + + P++G+ N++G ++ G + G
Sbjct: 560 NMPPQMMGGPIQSAPEGPQQGAMWQGRNEIGYSYPNRQSTGSAPQG 605
>UNIPROTKB|G4MS97 [details] [associations]
symbol:MGG_04489 "Non-histone chromosomal protein 6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR009071 Pfam:PF00505
GO:GO:0043565 GO:GO:0006338 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CM001231
GO:GO:0031491 GO:GO:0051123 GO:GO:0032301 GO:GO:0034724
GO:GO:0070898 RefSeq:XP_003710967.1 ProteinModelPortal:G4MS97
SMR:G4MS97 EnsemblFungi:MGG_04489T0 GeneID:2678075
KEGG:mgr:MGG_04489 Uniprot:G4MS97
Length = 101
Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP PK S Y FF E ++ G + K +G W L++ ++ Y K
Sbjct: 20 DPMAPKRGLSAYMFFANEQRDNVREENPGVTFGQVGKILGERWKALSDKQRAPYDAKAAA 79
Query: 305 DKERYKSEMLEYRSSYD 321
DK+RY+ E Y++ D
Sbjct: 80 DKKRYEDEKAAYQAGGD 96
>UNIPROTKB|Q32L34 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9913
"Bos taurus" [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 EMBL:BC109790 IPI:IPI00760422
RefSeq:NP_001035652.1 UniGene:Bt.54197 ProteinModelPortal:Q32L34
Ensembl:ENSBTAT00000000438 GeneID:539195 KEGG:bta:539195 CTD:127540
InParanoid:Q32L34 KO:K11297 OMA:RYQEEMM OrthoDB:EOG4255TS
NextBio:20877839 Uniprot:Q32L34
Length = 194
Score = 113 (44.8 bits), Expect = 0.00013, P = 0.00013
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP P+ S + F +HYA+LK ++K G +WS T+ +KQ Y+++
Sbjct: 89 DPHAPRRPPSSFLLFCQDHYAQLKSENPSWSVVQVAKASGKMWSAKTDVDKQPYEQRAAL 148
Query: 305 DKERYKSEMLEYRSSYDS 322
+ +Y+ E+ YR+ +++
Sbjct: 149 LRAKYREELSVYRNQFNA 166
>UNIPROTKB|E1BKQ8 [details] [associations]
symbol:Bt.110992 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003677 GO:GO:0005622 Gene3D:1.10.150.60 InterPro:IPR021906
Pfam:PF12031 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
EMBL:DAAA02027298 EMBL:DAAA02027299 EMBL:DAAA02027300
EMBL:DAAA02027301 EMBL:DAAA02027302 EMBL:DAAA02027303
EMBL:DAAA02027304 EMBL:DAAA02027305 IPI:IPI00923955
Ensembl:ENSBTAT00000003537 Uniprot:E1BKQ8
Length = 1537
Score = 126 (49.4 bits), Expect = 0.00016, P = 0.00016
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 221 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQY 279
Query: 129 LYHFE 133
L+ FE
Sbjct: 280 LFAFE 284
>UNIPROTKB|F1MKU0 [details] [associations]
symbol:Bt.110992 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0016514 Gene3D:1.10.150.60
InterPro:IPR021906 Pfam:PF12031 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 OMA:PIGIQGR EMBL:DAAA02027298
EMBL:DAAA02027299 EMBL:DAAA02027300 EMBL:DAAA02027301
EMBL:DAAA02027302 EMBL:DAAA02027303 EMBL:DAAA02027304
EMBL:DAAA02027305 IPI:IPI00923955 Ensembl:ENSBTAT00000061484
Uniprot:F1MKU0
Length = 1628
Score = 126 (49.4 bits), Expect = 0.00017, P = 0.00017
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 470 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQY 528
Query: 129 LYHFE 133
L+ FE
Sbjct: 529 LFAFE 533
>FB|FBgn0261885 [details] [associations]
symbol:osa "osa" species:7227 "Drosophila melanogaster"
[GO:0046530 "photoreceptor cell differentiation" evidence=IMP]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IMP] [GO:0008587 "imaginal disc-derived
wing margin morphogenesis" evidence=IMP] [GO:0007379 "segment
specification" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISS;IDA;NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA;IMP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0003713 "transcription coactivator
activity" evidence=IC] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] [GO:0048190 "wing disc dorsal/ventral
pattern formation" evidence=IGI] [GO:0042058 "regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
EMBL:AE014297 GO:GO:0048190 GO:GO:0045893 GO:GO:0016055
GO:GO:0003677 GO:GO:0008586 GO:GO:0006351 GO:GO:0016568
eggNOG:NOG12793 GO:GO:0007379 GO:GO:0007480 KO:K11653
Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 GO:GO:0046530 GO:GO:0008587
GO:GO:0035060 GO:GO:0042058 EMBL:AF053091 PIR:T13049
RefSeq:NP_001163639.1 RefSeq:NP_524392.2 RefSeq:NP_732263.1
UniGene:Dm.2989 ProteinModelPortal:Q8IN94 SMR:Q8IN94 DIP:DIP-20699N
IntAct:Q8IN94 MINT:MINT-297379 STRING:Q8IN94 PaxDb:Q8IN94
PRIDE:Q8IN94 EnsemblMetazoa:FBtr0089581 EnsemblMetazoa:FBtr0301487
GeneID:42130 KEGG:dme:Dmel_CG7467 CTD:42130 FlyBase:FBgn0261885
InParanoid:Q8IN94 OMA:SQMGQGP OrthoDB:EOG4MCVF9 PhylomeDB:Q8IN94
ChiTaRS:osa GenomeRNAi:42130 NextBio:827314 Bgee:Q8IN94
GermOnline:CG7467 Uniprot:Q8IN94
Length = 2716
Score = 128 (50.1 bits), Expect = 0.00018, P = 0.00018
Identities = 40/135 (29%), Positives = 64/135 (47%)
Query: 70 PTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLL 129
PT+ + LDL+RL++ V RGG +V + + WK++ + + +SA++ LRK+Y L
Sbjct: 1025 PTISKQPLDLYRLYIYVKERGGFVEVTKSKTWKDIAGLLGIGAS-SSAAYTLRKHYTKNL 1083
Query: 130 YHFEQVYYFRREA-PSSSMPDAVSGSSLDNGSAS--PEEGS------TINQLGS---QGS 177
FE ++ R + P + +GS A+ P G T N GS Q S
Sbjct: 1084 LTFE-CHFDRGDIDPLPIIQQVEAGSKKKTAKAASVPSPGGGHLDAGTTNSTGSSNSQDS 1142
Query: 178 SKLQIGCSVSGVIDG 192
G + + IDG
Sbjct: 1143 FPAPPGSAPNAAIDG 1157
>UNIPROTKB|J9P699 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
EMBL:AAEX03014229 EMBL:AAEX03014230 Ensembl:ENSCAFT00000046727
Uniprot:J9P699
Length = 196
Score = 112 (44.5 bits), Expect = 0.00018, P = 0.00018
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E+ ++K + G ++KK+G +W+N +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 305 DKERYK 310
KE+Y+
Sbjct: 151 LKEKYE 156
>UNIPROTKB|F1LNP1 [details] [associations]
symbol:F1LNP1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0003677
GO:GO:0016514 Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031
SUPFAM:SSF46774 GeneTree:ENSGT00550000074575 IPI:IPI00193175
Ensembl:ENSRNOT00000022939 Uniprot:F1LNP1
Length = 1755
Score = 126 (49.4 bits), Expect = 0.00019, P = 0.00019
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 588 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQY 646
Query: 129 LYHFE 133
L+ FE
Sbjct: 647 LFAFE 651
>UNIPROTKB|H0Y7H8 [details] [associations]
symbol:ARID1B "AT-rich interactive domain-containing
protein 1B" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0005634
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677
Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031 SUPFAM:SSF46774
EMBL:AL355297 EMBL:AL049820 EMBL:AL162578 EMBL:AL591545
HGNC:HGNC:18040 EMBL:AL136091 Ensembl:ENST00000414678 Bgee:H0Y7H8
Uniprot:H0Y7H8
Length = 1758
Score = 126 (49.4 bits), Expect = 0.00019, P = 0.00019
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 599 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQY 657
Query: 129 LYHFE 133
L+ FE
Sbjct: 658 LFAFE 662
>UNIPROTKB|G3XAA0 [details] [associations]
symbol:ARID1B "AT rich interactive domain 1B (SWI1-like),
isoform CRA_a" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0005634
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:CH471051
Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031 SUPFAM:SSF46774
EMBL:AL355297 EMBL:AL049820 EMBL:AL162578 EMBL:AL591545
UniGene:Hs.291587 UniGene:Hs.741783 HGNC:HGNC:18040 EMBL:AL136091
ProteinModelPortal:G3XAA0 SMR:G3XAA0 PRIDE:G3XAA0
Ensembl:ENST00000275248 PhylomeDB:G3XAA0 ArrayExpress:G3XAA0
Bgee:G3XAA0 Uniprot:G3XAA0
Length = 2231
Score = 126 (49.4 bits), Expect = 0.00024, P = 0.00024
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 1072 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQY 1130
Query: 129 LYHFE 133
L+ FE
Sbjct: 1131 LFAFE 1135
>UNIPROTKB|Q8NFD5 [details] [associations]
symbol:ARID1B "AT-rich interactive domain-containing
protein 1B" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=NAS] [GO:0016514 "SWI/SNF complex" evidence=IDA]
[GO:0048096 "chromatin-mediated maintenance of transcription"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0007399 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0006351 GO:GO:0003713
GO:GO:0016514 eggNOG:NOG12793 Orphanet:1465 HOVERGEN:HBG058196
KO:K11653 GO:GO:0048096 Gene3D:1.10.150.60 InterPro:IPR021906
Pfam:PF12031 SUPFAM:SSF46774 EMBL:AF259792 EMBL:AL355297
EMBL:AL049820 EMBL:AL162578 EMBL:AL591545 EMBL:AJ001216 EMBL:Y08266
EMBL:AF521671 EMBL:AF253515 EMBL:AF468300 EMBL:AB033061
IPI:IPI00015404 IPI:IPI00395617 IPI:IPI00396577 IPI:IPI00742937
RefSeq:NP_059989.2 RefSeq:NP_065783.3 UniGene:Hs.291587
UniGene:Hs.741783 PDB:2CXY PDB:2EH9 PDBsum:2CXY PDBsum:2EH9
ProteinModelPortal:Q8NFD5 SMR:Q8NFD5 IntAct:Q8NFD5
MINT:MINT-1153351 STRING:Q8NFD5 PhosphoSite:Q8NFD5 DMDM:73921720
PaxDb:Q8NFD5 PRIDE:Q8NFD5 Ensembl:ENST00000346085
Ensembl:ENST00000350026 Ensembl:ENST00000367148 GeneID:57492
KEGG:hsa:57492 UCSC:uc003qqn.3 UCSC:uc003qqo.3 UCSC:uc003qqp.3
CTD:57492 GeneCards:GC06P157191 H-InvDB:HIX0006320
H-InvDB:HIX0165033 HGNC:HGNC:18040 HPA:HPA016511 MIM:614556
MIM:614562 neXtProt:NX_Q8NFD5 Orphanet:251056 PharmGKB:PA134909463
OMA:PIGIQGR OrthoDB:EOG4G7BXG EvolutionaryTrace:Q8NFD5
GenomeRNAi:57492 NextBio:63782 ArrayExpress:Q8NFD5 Bgee:Q8NFD5
CleanEx:HS_ARID1B Genevestigator:Q8NFD5 GermOnline:ENSG00000049618
Uniprot:Q8NFD5
Length = 2236
Score = 126 (49.4 bits), Expect = 0.00024, P = 0.00024
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 1077 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQY 1135
Query: 129 LYHFE 133
L+ FE
Sbjct: 1136 LFAFE 1140
>UNIPROTKB|F1PBJ5 [details] [associations]
symbol:ARID1B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0003677
GO:GO:0005622 Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031
SUPFAM:SSF46774 GeneTree:ENSGT00550000074575 OMA:PIGIQGR
EMBL:AAEX03000290 EMBL:AAEX03000291 EMBL:AAEX03000292
EMBL:AAEX03000293 Ensembl:ENSCAFT00000000940 Uniprot:F1PBJ5
Length = 2241
Score = 126 (49.4 bits), Expect = 0.00024, P = 0.00024
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL RL+V V GGL +V ++++W+E+ N T+ ++AS L+K Y+
Sbjct: 1083 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASS-LKKQYIQY 1141
Query: 129 LYHFE 133
L+ FE
Sbjct: 1142 LFAFE 1146
>UNIPROTKB|Q5D144 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9823 "Sus scrofa" [GO:0008301 "DNA binding, bending"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=ISS] [GO:0070363 "mitochondrial light strand promoter
sense binding" evidence=ISS] [GO:0033108 "mitochondrial respiratory
chain complex assembly" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
HSSP:P63159 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OrthoDB:EOG4KKZ4D EMBL:AY923074 RefSeq:NP_001123683.1
UniGene:Ssc.48086 UniGene:Ssc.78474 ProteinModelPortal:Q5D144
STRING:Q5D144 GeneID:397279 KEGG:ssc:397279 Uniprot:Q5D144
Length = 246
Score = 113 (44.8 bits), Expect = 0.00030, P = 0.00030
Identities = 26/65 (40%), Positives = 34/65 (52%)
Query: 249 RPKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKER 308
+PK RS YN F AE + K G + K I W NL+ ++KQVY + DK R
Sbjct: 154 KPKRPRSAYNIFIAERFQEAKD---GPSQVKLKTINENWKNLSSSQKQVYIQLAEDDKVR 210
Query: 309 YKSEM 313
Y +EM
Sbjct: 211 YYNEM 215
>UNIPROTKB|P23497 [details] [associations]
symbol:SP100 "Nuclear autoantigen Sp-100" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0019048
"virus-host interaction" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IPI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0016605 "PML
body" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS]
[GO:0060333 "interferon-gamma-mediated signaling pathway"
evidence=IC;TAS] [GO:0005730 "nucleolus" evidence=IMP;IDA]
[GO:0032526 "response to retinoic acid" evidence=IDA] [GO:0034097
"response to cytokine stimulus" evidence=IDA] [GO:0034399 "nuclear
periphery" evidence=IDA] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=IC] [GO:0003713 "transcription
coactivator activity" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0006978 "DNA damage response, signal
transduction by p53 class mediator resulting in transcription of
p21 class mediator" evidence=IDA] [GO:0034340 "response to type I
interferon" evidence=IDA;IMP] [GO:0034341 "response to
interferon-gamma" evidence=IDA;IMP] [GO:0060337 "type I
interferon-mediated signaling pathway" evidence=IC] [GO:0070087
"chromo shadow domain binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0019900 "kinase
binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA;IMP] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0043392
"negative regulation of DNA binding" evidence=IDA] [GO:0043433
"negative regulation of sequence-specific DNA binding transcription
factor activity" evidence=IDA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0051271 "negative regulation of cellular component movement"
evidence=IMP] [GO:0032897 "negative regulation of viral
transcription" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IPI]
[GO:0008134 "transcription factor binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000770 InterPro:IPR004865
Pfam:PF01342 Pfam:PF03172 PROSITE:PS50864 PROSITE:PS51414
SMART:SM00258 Pfam:PF00505 GO:GO:0005737 Reactome:REACT_6900
GO:GO:0003714 GO:GO:0045892 GO:GO:0019048 GO:GO:0045893
GO:GO:0060333 GO:GO:0060337 GO:GO:0051091 GO:GO:0005730
GO:GO:0003677 GO:GO:0016605 GO:GO:0034097 GO:GO:0000122
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0003713 GO:GO:0032526 GO:GO:0051271 GO:GO:0043433
Gene3D:3.10.390.10 InterPro:IPR010919 SUPFAM:SSF63763 GO:GO:0048384
GO:GO:0034399 GO:GO:0006978 Pfam:PF09011 GO:GO:0043392
OrthoDB:EOG44QT09 GO:GO:0034340 GO:GO:0032897 EMBL:AC009949
EMBL:U36501 EMBL:AF056322 EMBL:M60618 EMBL:AF255565 EMBL:AK293373
EMBL:AC010149 EMBL:BC011562 EMBL:X95472 EMBL:L79986 EMBL:L79987
EMBL:L79988 EMBL:AF076675 EMBL:AF378670 IPI:IPI00011675
IPI:IPI00218324 IPI:IPI00218325 IPI:IPI00218326 IPI:IPI00218327
IPI:IPI00917048 IPI:IPI00917345 PIR:A37244 RefSeq:NP_001073860.1
RefSeq:NP_001193630.1 RefSeq:NP_001193631.1 RefSeq:NP_001193632.1
RefSeq:NP_001193633.1 RefSeq:NP_003104.2 UniGene:Hs.369056 PDB:1H5P
PDBsum:1H5P ProteinModelPortal:P23497 SMR:P23497 DIP:DIP-5983N
IntAct:P23497 MINT:MINT-1188807 STRING:P23497 PhosphoSite:P23497
DMDM:13878931 PaxDb:P23497 PRIDE:P23497 Ensembl:ENST00000264052
Ensembl:ENST00000340126 Ensembl:ENST00000409341
Ensembl:ENST00000409897 Ensembl:ENST00000427101 GeneID:6672
KEGG:hsa:6672 UCSC:uc002vqq.2 UCSC:uc002vqt.3 UCSC:uc002vqu.1
UCSC:uc010zmb.2 CTD:6672 GeneCards:GC02P231280 HGNC:HGNC:11206
HPA:HPA016707 HPA:HPA017384 MIM:604585 neXtProt:NX_P23497
PharmGKB:PA36043 eggNOG:NOG249894 HOVERGEN:HBG057632 KO:K15413
OMA:TESCEQV ChiTaRS:SP100 EvolutionaryTrace:P23497 GenomeRNAi:6672
NextBio:26015 ArrayExpress:P23497 Bgee:P23497 CleanEx:HS_SP100
Genevestigator:P23497 GermOnline:ENSG00000067066 Uniprot:P23497
Length = 879
Score = 121 (47.7 bits), Expect = 0.00030, P = 0.00030
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK + F +E+ ++K + G + KK+ +W+N A+KQ Y++K K
Sbjct: 765 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKKAAK 824
Query: 305 DKERYKSEMLEYRS 318
KE+YK ++ YR+
Sbjct: 825 LKEKYKKDIAAYRA 838
>UNIPROTKB|Q5T7C0 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001654
"eye development" evidence=IEA] [GO:0005125 "cytokine activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010858 "calcium-dependent protein kinase
regulator activity" evidence=IEA] [GO:0030295 "protein kinase
activator activity" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
GO:GO:0005634 GO:GO:0005737 GO:GO:0005615 GO:GO:0003677
GO:GO:0030324 GO:GO:0045944 GO:GO:0051384 GO:GO:0043005
GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045819
GO:GO:0001654 Pfam:PF09011 GO:GO:0045639 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 GO:GO:0010858
GO:GO:2000426 EMBL:AL138681 IPI:IPI00643746 SMR:Q5T7C0
Ensembl:ENST00000398908 Uniprot:Q5T7C0
Length = 97
Score = 95 (38.5 bits), Expect = 0.00031, P = 0.00031
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 246 DPSRPKSNRSGYNFFFA---EHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKG 302
DP +P+ S Y FF E + + P SKK W ++ EK +++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 303 LKDKERYKSEMLEY 316
DK RY+ EM Y
Sbjct: 65 KADKARYEREMKTY 78
>UNIPROTKB|F1LVZ2 [details] [associations]
symbol:F1LVZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00561233 Ensembl:ENSRNOT00000040837 Uniprot:F1LVZ2
Length = 199
Score = 110 (43.8 bits), Expect = 0.00034, P = 0.00034
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DPS PK S F F Y ++K + G ++KK+G +W N T+ +KQ Y + K
Sbjct: 80 DPSAPKRPLS--LFSFCSEYPQIKGEHPGLSIGDVAKKLGEMW-NSTDTDKQPYGKMAAK 136
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 137 LKEKYEKDIAAYRA 150
>UNIPROTKB|F1M1H9 [details] [associations]
symbol:F1M1H9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00949462
Ensembl:ENSRNOT00000052187 Uniprot:F1M1H9
Length = 179
Score = 108 (43.1 bits), Expect = 0.00037, P = 0.00037
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP P+ + F +E++ ++K + G ++KK+G +W+N +KQ ++K K
Sbjct: 92 DPDAPRRPPLAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAK 151
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ + YR+
Sbjct: 152 LKEKYEKDNAAYRA 165
>UNIPROTKB|D6R9A6 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048545
"response to steroid hormone stimulus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045944 GO:GO:0048545
GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007289 GO:GO:0043388 Pfam:PF09011
HOGENOM:HOG000197861 HGNC:HGNC:5000 ChiTaRS:HMGB2 EMBL:AC097534
IPI:IPI00967671 ProteinModelPortal:D6R9A6 SMR:D6R9A6
Ensembl:ENST00000506267 ArrayExpress:D6R9A6 Bgee:D6R9A6
Uniprot:D6R9A6
Length = 134
Score = 97 (39.2 bits), Expect = 0.00037, P = 0.00037
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 246 DPSRPKSNRSGYNFFFA---EHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKG 302
DP++P+ S Y FF E + + P SKK W ++ EK +++
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 303 LKDKERYKSEMLEY 316
DK RY EM Y
Sbjct: 65 KSDKARYDREMKNY 78
>ZFIN|ZDB-GENE-050417-290 [details] [associations]
symbol:hmgb3b "high-mobility group box 3b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-050417-290 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 KO:K11296
EMBL:BC093186 IPI:IPI00511002 RefSeq:NP_001017769.1
UniGene:Dr.75880 ProteinModelPortal:Q567G0 SMR:Q567G0 GeneID:550466
KEGG:dre:550466 CTD:550466 InParanoid:Q567G0 OrthoDB:EOG4TB4CM
NextBio:20879710 ArrayExpress:Q567G0 Uniprot:Q567G0
Length = 198
Score = 109 (43.4 bits), Expect = 0.00045, P = 0.00045
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ P+ SG+ F AE +K ++KK+G +W+NL+++EKQ + K
Sbjct: 90 DPNAPRRPPSGFFLFCAEQRPIIKAQNPSLGIGDVAKKLGGMWNNLSDSEKQPFLSNADK 149
Query: 305 DKERYKSEMLEYR 317
K++Y+ +M YR
Sbjct: 150 LKDKYQKDMAFYR 162
>MGI|MGI:1916567 [details] [associations]
symbol:Hmgb4 "high-mobility group box 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1916567 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 CTD:127540 KO:K11297 OMA:RYQEEMM
OrthoDB:EOG4255TS HSSP:P17741 EMBL:AK005588 EMBL:BC061030
IPI:IPI00118961 RefSeq:NP_081312.2 UniGene:Mm.331893
ProteinModelPortal:Q6P8W9 SMR:Q6P8W9 PhosphoSite:Q6P8W9
PRIDE:Q6P8W9 Ensembl:ENSMUST00000053830 GeneID:69317 KEGG:mmu:69317
eggNOG:NOG288392 InParanoid:Q6P8W9 NextBio:329122 Bgee:Q6P8W9
CleanEx:MM_HMGB4 Genevestigator:Q6P8W9 Uniprot:Q6P8W9
Length = 181
Score = 107 (42.7 bits), Expect = 0.00051, P = 0.00051
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP P+ S + F +HYA LK ++K G +WS EAEK+ Y++K
Sbjct: 89 DPKAPRKPPSSFLLFSRDHYAMLKQENPDWTVVQVAKAAGKMWSTTDEAEKKPYEQKAAL 148
Query: 305 DKERYKSEMLEYRS 318
+ +Y E YR+
Sbjct: 149 MRAKYFEEQEAYRN 162
>UNIPROTKB|E1BA21 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9913 "Bos taurus" [GO:0070363 "mitochondrial light strand
promoter sense binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=IEA] [GO:0033108
"mitochondrial respiratory chain complex assembly" evidence=IEA]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0042645 GO:GO:0033108 Pfam:PF09011 GO:GO:0006391
IPI:IPI00707168 UniGene:Bt.102328 GO:GO:0070363 OMA:YENEMKS
GeneTree:ENSGT00440000039001 EMBL:DAAA02062260 EMBL:DAAA02062261
Ensembl:ENSBTAT00000052511 Uniprot:E1BA21
Length = 246
Score = 110 (43.8 bits), Expect = 0.00066, P = 0.00066
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 249 RPKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKER 308
+PK RS YN F AE + + G + K I W NL+ ++KQVY + DK R
Sbjct: 154 KPKRPRSAYNIFIAERFQEARD---GTSQVKLKAINENWKNLSNSQKQVYIQLAKDDKIR 210
Query: 309 YKSEM 313
Y +EM
Sbjct: 211 YYNEM 215
>UNIPROTKB|Q0II87 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9913 "Bos taurus" [GO:0008301 "DNA binding, bending"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0042645 "mitochondrial nucleoid" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0006391 "transcription
initiation from mitochondrial promoter" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0070363 "mitochondrial light strand promoter sense binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0003700 GO:GO:0003682 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
Pfam:PF09011 GO:GO:0006391 EMBL:BC122754 IPI:IPI00707168
RefSeq:NP_001029188.2 UniGene:Bt.102328 ProteinModelPortal:Q0II87
STRING:Q0II87 PRIDE:Q0II87 GeneID:510059 KEGG:bta:510059 CTD:7019
eggNOG:NOG297801 HOGENOM:HOG000139423 HOVERGEN:HBG106674
InParanoid:Q0II87 KO:K11830 NextBio:20869256 GO:GO:0070363
Uniprot:Q0II87
Length = 246
Score = 110 (43.8 bits), Expect = 0.00066, P = 0.00066
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 249 RPKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKER 308
+PK RS YN F AE + + G + K I W NL+ ++KQVY + DK R
Sbjct: 154 KPKRPRSAYNIFIAERFQEARD---GTSQVKLKAINENWKNLSNSQKQVYIQLAKDDKIR 210
Query: 309 YKSEM 313
Y +EM
Sbjct: 211 YYNEM 215
>WB|WBGene00001974 [details] [associations]
symbol:hmg-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0040011 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035 GO:GO:0007276
EMBL:FO081094 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 OMA:PVEVKKG PIR:T16908 RefSeq:NP_498633.1
ProteinModelPortal:P41848 SMR:P41848 DIP:DIP-26608N
MINT:MINT-1083096 STRING:P41848 PaxDb:P41848
EnsemblMetazoa:T20B12.8 GeneID:176052 KEGG:cel:CELE_T20B12.8
UCSC:T20B12.8 CTD:176052 WormBase:T20B12.8 InParanoid:P41848
NextBio:890908 Uniprot:P41848
Length = 697
Score = 116 (45.9 bits), Expect = 0.00081, P = 0.00081
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S Y +F LK G A ++KK G W ++ +K+ ++EK +
Sbjct: 552 DPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKWEEKAEE 609
Query: 305 DKERYKSEMLEYRSS 319
DK RY+ EM EYR +
Sbjct: 610 DKSRYEKEMKEYRKN 624
>RGD|1588759 [details] [associations]
symbol:Hmgb1-ps3 "high mobility group box 1, pseudogene 3"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1588759 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
OrthoDB:EOG4KWJV1 GeneTree:ENSGT00560000076717 IPI:IPI00366734
Ensembl:ENSRNOT00000046626 Uniprot:D3ZGW6
Length = 212
Score = 107 (42.7 bits), Expect = 0.00097, P = 0.00097
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK + F +E+ ++K + G + KK+G +W+N +KQ ++K K
Sbjct: 91 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWNNTAVDDKQPCEKKAAK 150
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ YR+
Sbjct: 151 LKEKYEKDIAAYRA 164
>TAIR|locus:2128504 [details] [associations]
symbol:3xHMG-box2 "3xHigh Mobility Group-box2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0006084 "acetyl-CoA metabolic process"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0042127 "regulation of
cell proliferation" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AL161560 EMBL:AL035394 HSSP:P07155
HOGENOM:HOG000238964 KO:K09273 ProtClustDB:CLSN2686000
EMBL:AY074353 EMBL:AY096398 EMBL:AY125491 IPI:IPI00533790
PIR:T05612 RefSeq:NP_194111.1 UniGene:At.2572 UniGene:At.71059
ProteinModelPortal:Q9SUP7 SMR:Q9SUP7 STRING:Q9SUP7 PaxDb:Q9SUP7
PRIDE:Q9SUP7 EnsemblPlants:AT4G23800.1 GeneID:828480
KEGG:ath:AT4G23800 TAIR:At4g23800 eggNOG:NOG327891
InParanoid:Q9SUP7 OMA:FCNERRA PhylomeDB:Q9SUP7
Genevestigator:Q9SUP7 Uniprot:Q9SUP7
Length = 456
Score = 113 (44.8 bits), Expect = 0.00097, P = 0.00097
Identities = 27/79 (34%), Positives = 37/79 (46%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP++PK S Y F + +L G A ++ I + W L+E EKQVY K K
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAK 434
Query: 305 DKERYKSEMLEYRSSYDST 323
E YK E+ Y +T
Sbjct: 435 LMEAYKKEVEAYNKKSAAT 453
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 326 291 0.00089 115 3 11 23 0.43 34
33 0.43 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 137
No. of states in DFA: 609 (65 KB)
Total size of DFA: 210 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.88u 0.15s 25.03t Elapsed: 00:00:01
Total cpu time: 24.89u 0.15s 25.04t Elapsed: 00:00:01
Start: Tue May 21 03:12:15 2013 End: Tue May 21 03:12:16 2013
WARNINGS ISSUED: 1