BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020460
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10
PE=2 SV=1
Length = 319
Score = 327 bits (838), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 164/289 (56%), Positives = 206/289 (71%), Gaps = 18/289 (6%)
Query: 40 AKYEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDR 99
AKY+D+ ++S LFW L AF KVPTVGG LDLHRLF+EVTSRGG+ +V++DR
Sbjct: 34 AKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDR 93
Query: 100 RWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRREAPSSSMPDAVSG-SSLDN 158
+WKEV+ F+FPTTITSASFVLRKYYL L+ E VYY E P SS+ SL N
Sbjct: 94 KWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYL--EKPVSSLQSTDEALKSLAN 151
Query: 159 GSASPEEGSTINQLGSQGSSKLQIGCSVSGVIDGKFDNGYLVTVNLGSEQLKGVLYHIPH 218
S +PEE G + Q+G V G IDGKFD+GYLVT+ LGS++LKGVLYHIP
Sbjct: 152 ESPNPEE----------GIDEPQVGYEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHIPQ 201
Query: 219 AHNVSQSSNNSAAPT-----HRRRKRSRLALRDPSRPKSNRSGYNFFFAEHYARLKPHYY 273
+ SQ + + + R RK+S+LA+ D +PK +RSGYNFFFAE YARLKP Y+
Sbjct: 202 TPSQSQQTMETPSAIVQSSQRRHRKKSKLAVVDTQKPKCHRSGYNFFFAEQYARLKPEYH 261
Query: 274 GQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSYDS 322
GQE++I+KKIG +WSNLTE+EKQVYQ+KG+KD ERY+ EMLEY+SS++S
Sbjct: 262 GQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYKSSHES 310
>sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15
PE=2 SV=1
Length = 448
Score = 259 bits (661), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 186/312 (59%), Gaps = 34/312 (10%)
Query: 38 PTAKYEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIR 97
P A YE + LF +LE H G KF VP +GG+ LDLH+LFVEVTSRGG+ K++
Sbjct: 21 PEATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILN 80
Query: 98 DRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRR--EAPSSSMPDAVSGSS 155
+RRWKEV F FP T T+AS+VLRKYY SLL ++EQ+Y+FR + P SM +
Sbjct: 81 ERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYFFRSNGQIPPDSMQSPSARPC 140
Query: 156 LDNGSASPEE---------GSTINQLGSQGSSKLQIGCSVSGVIDGKFDNGYLVTVNLGS 206
G+ P + IN G S G +V GVIDGKF++GYLVTV +GS
Sbjct: 141 FIQGAIRPSQELQALTFTPQPKINTAEFLGGS--LAGSNVVGVIDGKFESGYLVTVTIGS 198
Query: 207 EQLKGVLYH------------------IPHAHNVS---QSSNNSAAPTHRRRKRSRLALR 245
EQLKGVLY +P+ N+S Q RRRK+S + R
Sbjct: 199 EQLKGVLYQLLPQNTVSYQTPQQSHGVLPNTLNISANPQGVAGGVTKRRRRRKKSEIKRR 258
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKD 305
DP PK NRSGYNFFFAE +ARLKP + G+++ IS+ IG LW+ L E EK +YQ K ++D
Sbjct: 259 DPDHPKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELWNKLNEDEKLIYQGKAMED 318
Query: 306 KERYKSEMLEYR 317
KERY++EM +YR
Sbjct: 319 KERYRTEMEDYR 330
>sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11 OS=Arabidopsis thaliana
GN=HMGB11 PE=3 SV=2
Length = 337
Score = 244 bits (623), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 127/286 (44%), Positives = 185/286 (64%), Gaps = 25/286 (8%)
Query: 42 YEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRW 101
Y+DI ++ +LFW L FH+S KFK+P VGGK+LDLHRLF EVTSRGGL KVI+DRR
Sbjct: 30 YQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRC 89
Query: 102 KEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRREAPSSSMPDAVSGSSLDNGSA 161
KEV+ FNF TTIT+++FVLRK YL +L+ FE +YYF +AP S+ + L +
Sbjct: 90 KEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYF--QAPLSTFWEKEKALKLLIEKS 147
Query: 162 SPEEGSTINQLGSQGSSKLQIGCSVSGVIDGKFDNGYLVTVNLGSEQLKGVLYHIPHAHN 221
+ + + S +L+ G ++G+IDGKF++GYL++ +GSE+LKG+LYHI
Sbjct: 148 ANRD---------KDSQELKPGTVITGIIDGKFESGYLISTKVGSEKLKGMLYHI----- 193
Query: 222 VSQSSNNSAAPTHRRRKRSRLALRDPSR-PKSNRSGYNFFFAEHYARLKPHYYGQEKAIS 280
+ T R +K+++ + D + PK R+GYNFF AE R+K GQ+ +
Sbjct: 194 --------SPETKRGKKKAKSSQGDSHKPPKRQRTGYNFFVAEQSVRIKAENAGQKVSSP 245
Query: 281 KKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSYDSTVQQ 326
K G +W+NL+E++++VY EK +D +RYK E+L+YRS +S V +
Sbjct: 246 KNFGNMWTNLSESDRKVYYEKSREDGKRYKMEILQYRSLMESRVAE 291
>sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9
PE=2 SV=1
Length = 338
Score = 231 bits (588), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 133/302 (44%), Positives = 174/302 (57%), Gaps = 21/302 (6%)
Query: 35 YPPPTAKYEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGK 94
YP P A +E + + S +FW TL FH KF +P +GGK LDLH L+VEVT RGG K
Sbjct: 27 YPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGYEK 86
Query: 95 VIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRREAP-----SSSMPD 149
V+ +++W+EV VF F T TSASFVLRK+YL+LL+H+EQV+ F P ++ +
Sbjct: 87 VVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIATFHAN 146
Query: 150 AVSGSSLDNGSASPEEGSTIN-QLGSQGSSKLQIGCSVSGVIDGKFDNGYLVTVNLGSEQ 208
+ + +P N SQGSS + G I+GKFD GYLV V LGSE
Sbjct: 147 PSTSKEMALVEYTPPSIRYHNTHPPSQGSSSF----TAIGTIEGKFDCGYLVKVKLGSEI 202
Query: 209 LKGVLYHIPHAHNVSQSS---NNSAAP--------THRRRKRSRLALRDPSRPKSNRSGY 257
L GVLYH S + NN+ P ++R DP+ PK NRSGY
Sbjct: 203 LNGVLYHSAQPGPSSSPTAVLNNAVVPYVETGRRRRRLGKRRRSRRREDPNYPKPNRSGY 262
Query: 258 NFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYR 317
NFFFAE + +LK Y +E+ +K IG WSNL+ E+ VYQ+ GLKDKERY+ E+ EYR
Sbjct: 263 NFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNEYR 322
Query: 318 SS 319
+
Sbjct: 323 ET 324
>sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens
GN=ARID2 PE=1 SV=2
Length = 1835
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 6/103 (5%)
Query: 37 PPTAKYEDIAQSSDLFWATLEAFHKSFGDKFK-VPTVGGKALDLHRLFVEVTSRGGLGKV 95
PP + + +A F L FH S G FK +P VGGK LDLH L+ VT+ GG KV
Sbjct: 9 PPDERRKGLA-----FLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKV 63
Query: 96 IRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYF 138
+W E+V FNFP + ++A+F L++YYL L +E+V++F
Sbjct: 64 SEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHF 106
>sp|Q6GQD7|ARI3A_XENLA AT-rich interactive domain-containing protein 3A OS=Xenopus laevis
GN=arid3a PE=2 SV=1
Length = 539
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 52 FWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 110
F L +F + G ++P + + LDL+ L+V VT +GGL +VI + W+E+ N
Sbjct: 215 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNL 274
Query: 111 PTTITSASFVLRKYYLSLLYHFE 133
PT+ITSA+F LR Y+ LY +E
Sbjct: 275 PTSITSAAFTLRTQYMKYLYPYE 297
>sp|Q5XGD9|ARI3A_XENTR AT-rich interactive domain-containing protein 3A OS=Xenopus
tropicalis GN=arid3a PE=2 SV=1
Length = 541
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 52 FWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 110
F L +F + G ++P + + LDL+ L+V VT +GGL +VI + W+E+ N
Sbjct: 218 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNL 277
Query: 111 PTTITSASFVLRKYYLSLLYHFE 133
PT+ITSA+F LR Y+ LY +E
Sbjct: 278 PTSITSAAFTLRTQYMKYLYPYE 300
>sp|Q99856|ARI3A_HUMAN AT-rich interactive domain-containing protein 3A OS=Homo sapiens
GN=ARID3A PE=1 SV=2
Length = 593
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 52 FWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 110
F L +F + G ++P + + LDL L+V VT +GGL +VI + W+E+ N
Sbjct: 244 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 303
Query: 111 PTTITSASFVLRKYYLSLLYHFE 133
PT+ITSA+F LR Y+ LY +E
Sbjct: 304 PTSITSAAFTLRTQYMKYLYPYE 326
>sp|A6PWV5|ARI3C_MOUSE AT-rich interactive domain-containing protein 3C OS=Mus musculus
GN=Arid3c PE=2 SV=2
Length = 409
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 52 FWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 110
F L +F + G +VP + + LDL+ LF VT++GGL +VI + W+EV +
Sbjct: 116 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 175
Query: 111 PTTITSASFVLRKYYLSLLYHFE 133
PTTITSA+F LR Y+ LY +E
Sbjct: 176 PTTITSAAFTLRTQYMKYLYPYE 198
>sp|Q62431|ARI3A_MOUSE AT-rich interactive domain-containing protein 3A OS=Mus musculus
GN=Arid3a PE=1 SV=1
Length = 601
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 52 FWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 110
F L +F + G ++P + + LDL L+V VT +GGL +VI + W+E+ N
Sbjct: 249 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 308
Query: 111 PTTITSASFVLRKYYLSLLYHFE 133
PT+ITSA+F LR Y+ LY +E
Sbjct: 309 PTSITSAAFTLRTQYMKYLYPYE 331
>sp|A6NKF2|ARI3C_HUMAN AT-rich interactive domain-containing protein 3C OS=Homo sapiens
GN=ARID3C PE=2 SV=1
Length = 412
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 52 FWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 110
F L +F + G +VP + + LDL+ LF VT++GGL +VI + W+EV +
Sbjct: 119 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 178
Query: 111 PTTITSASFVLRKYYLSLLYHFE 133
PTTITSA+F LR Y+ LY +E
Sbjct: 179 PTTITSAAFTLRTQYMKYLYPYE 201
>sp|A2BEA6|ARI3A_DANRE AT-rich interactive domain-containing protein 3A OS=Danio rerio
GN=arid3a PE=1 SV=1
Length = 570
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 52 FWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 110
F L +F + G ++P + + LDL+ L+ VT +GGL +VI + W+E+ N
Sbjct: 238 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNL 297
Query: 111 PTTITSASFVLRKYYLSLLYHFE 133
PT+ITSA+F LR Y+ LY +E
Sbjct: 298 PTSITSAAFTLRTQYMKYLYPYE 320
>sp|Q4H3P5|DRI_CIOIN Protein dead ringer homolog OS=Ciona intestinalis GN=Ci-DRIL1/2
PE=2 SV=1
Length = 571
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 52 FWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 110
F L +F + G ++P + + LDL++L+ V +GGL +VI + W+E+ N
Sbjct: 255 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYQLYRLVVEKGGLVEVINKKIWREITKGLNL 314
Query: 111 PTTITSASFVLRKYYLSLLYHFE 133
P++ITSA+F LR Y+ LY FE
Sbjct: 315 PSSITSAAFTLRTQYMKYLYPFE 337
>sp|Q8IVW6|ARI3B_HUMAN AT-rich interactive domain-containing protein 3B OS=Homo sapiens
GN=ARID3B PE=1 SV=2
Length = 561
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 52 FWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 110
F L F + G ++P + + LDL+ L+ VT +GGL ++I + W+E+ N
Sbjct: 221 FLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNL 280
Query: 111 PTTITSASFVLRKYYLSLLYHFE 133
PT+ITSA+F LR Y+ LY +E
Sbjct: 281 PTSITSAAFTLRTQYMKYLYAYE 303
>sp|Q9Z1N7|ARI3B_MOUSE AT-rich interactive domain-containing protein 3B OS=Mus musculus
GN=Arid3b PE=2 SV=1
Length = 568
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 52 FWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 110
F L F + G ++P + + LDL+ L+ VT +GGL ++I + W+E+ N
Sbjct: 219 FLDDLFIFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNL 278
Query: 111 PTTITSASFVLRKYYLSLLYHFE 133
PT+ITSA+F LR Y+ LY +E
Sbjct: 279 PTSITSAAFTLRTQYMKYLYAYE 301
>sp|Q8MQH7|DRI_STRPU Protein dead ringer homolog OS=Strongylocentrotus purpuratus GN=dri
PE=2 SV=1
Length = 490
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL+ L+ V ++GGL +VI ++W+E+ N P +ITSA+F LR Y+
Sbjct: 225 RIPIMAKQVLDLYELYNLVVAKGGLVEVINKKQWREITKGLNLPASITSAAFTLRTQYMK 284
Query: 128 LLYHFE 133
LY +E
Sbjct: 285 YLYPYE 290
>sp|Q24573|DRI_DROME Protein dead ringer OS=Drosophila melanogaster GN=retn PE=1 SV=2
Length = 911
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 52 FWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 110
F L +F + G ++P + LDL+ L+ V +RGGL VI + W+E++ +
Sbjct: 299 FLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHL 358
Query: 111 PTTITSASFVLRKYYLSLLYHFE 133
P++ITSA+F LR Y+ LY +E
Sbjct: 359 PSSITSAAFTLRTQYMKYLYPYE 381
>sp|O02326|CFI1_CAEEL AT-rich interactive domain-containing protein cfi-1
OS=Caenorhabditis elegans GN=cfi-1 PE=1 SV=3
Length = 467
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 68 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 127
++P + + LDL+ L+ V GGL ++I + W+E+ N P++ITSA+F LR Y
Sbjct: 204 RIPIMAKQVLDLYELYRLVVQHGGLVEIINKKLWREITKGLNLPSSITSAAFTLRTQYQK 263
Query: 128 LLYHFE 133
LY +E
Sbjct: 264 YLYDYE 269
>sp|A2BH40|ARI1A_MOUSE AT-rich interactive domain-containing protein 1A OS=Mus musculus
GN=Arid1a PE=1 SV=1
Length = 2283
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL+RL+V V GGL +V ++++W+E+ N T +SA+ L+K Y+
Sbjct: 1042 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNV-GTSSSAASSLKKQYIQC 1100
Query: 129 LYHFE 133
LY FE
Sbjct: 1101 LYAFE 1105
>sp|O14497|ARI1A_HUMAN AT-rich interactive domain-containing protein 1A OS=Homo sapiens
GN=ARID1A PE=1 SV=3
Length = 2285
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL+RL+V V GGL +V ++++W+E+ N T +SA+ L+K Y+
Sbjct: 1041 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNV-GTSSSAASSLKKQYIQC 1099
Query: 129 LYHFE 133
LY FE
Sbjct: 1100 LYAFE 1104
>sp|Q8NFD5|ARI1B_HUMAN AT-rich interactive domain-containing protein 1B OS=Homo sapiens
GN=ARID1B PE=1 SV=2
Length = 2236
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
+P VG K LDL RL+V V GGL +V ++++W+E+ N T +SA+ L+K Y+
Sbjct: 1077 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNV-GTSSSAASSLKKQYIQY 1135
Query: 129 LYHFE 133
L+ FE
Sbjct: 1136 LFAFE 1140
>sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila melanogaster GN=osa PE=1
SV=1
Length = 2716
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 69 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128
PT+ + LDL+RL++ V RGG +V + + WK++ + +SA++ LRK+Y
Sbjct: 1024 CPTISKQPLDLYRLYIYVKERGGFVEVTKSKTWKDIAGLLGI-GASSSAAYTLRKHYTKN 1082
Query: 129 LYHFE 133
L FE
Sbjct: 1083 LLTFE 1087
>sp|C0SUW7|ARID6_ARATH AT-rich interactive domain-containing protein 6 OS=Arabidopsis
thaliana GN=ARID6 PE=2 SV=1
Length = 398
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 52 FWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFP 111
F +EAF+K +FK P G+ L++ +L+ V + GG V ++ W++V FN P
Sbjct: 112 FLREVEAFYKESFLEFKPPKFYGQPLNILKLWRAVVNLGGYEVVTTNKLWRQVGESFNPP 171
Query: 112 TTITSASFVLRKYYLSLLYHFEQV 135
T T+ S+ R +Y L +E+
Sbjct: 172 KTCTTVSYTFRNFYEKALLEYEKC 195
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E ++K G ++KK+G +W+NL++ EKQ Y K K
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAK 147
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 148 LKEKYEKDVADYKS 161
>sp|P87057|NHP6_SCHPO Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nhp6 PE=3 SV=1
Length = 108
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 245 RDPSRPKSNRSGYNFFFAEHYARLKPH----YYGQEKAISKKIGVLWSNLTEAEKQVYQE 300
+DP+ PK N S + FF E+ ++K +GQ + +G W LT E++ Y+E
Sbjct: 11 KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQ---LGSLLGKRWKELTSTEREPYEE 67
Query: 301 KGLKDKERYKSEMLEY 316
K +DKERY+ E EY
Sbjct: 68 KARQDKERYERERKEY 83
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E ++K G ++KK+G +W+NL+++EKQ Y K K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAK 148
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 149 LKEKYEKDVADYKS 162
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid
PE=1 SV=1
Length = 1838
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 52 FWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFP 111
F + F + G K+P V KALDL+ L V GG+ + +DR+W +V +P
Sbjct: 232 FLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYP 291
Query: 112 TTITSASFVLRKYYLSLLYHFE 133
++ S L+ +Y +L+ FE
Sbjct: 292 SS-KSVGATLKAHYERILHPFE 312
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E ++K G ++KK+G +W+NL ++EKQ Y K K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAK 148
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 149 LKEKYEKDVADYKS 162
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK SG+ F +E ++K G ++KK+G +W+NL++ EKQ Y K K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTKAAK 148
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 149 LKEKYEKDVADYKS 162
>sp|P40632|NHP1_BABBO High mobility group protein homolog NHP1 OS=Babesia bovis PE=1 SV=1
Length = 97
Score = 49.3 bits (116), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 238 KRSRLALRDPSRPKSNRSGYNFFFAEHYARL---KPHYYGQEKAISKKIGVLWSNLTEAE 294
+R R A +DP+ PK S Y FF E + P AI K IG W+ L++ E
Sbjct: 11 RRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEE 70
Query: 295 KQVYQEKGLKDKERYKSEMLEY 316
K+ Y+ +D+ RY+ E EY
Sbjct: 71 KKPYERMSDEDRVRYEREKAEY 92
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nhp6
PE=3 SV=1
Length = 104
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 233 THRRRKRSRLALRDPSRPKSNRSGYNFFFAEHYARLKPH----YYGQEKAISKKIGVLWS 288
T + KR +DP+ PK S Y FF E+ +++ +GQ + K +G W
Sbjct: 8 TRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGISFGQ---VGKMLGERWK 64
Query: 289 NLTEAEKQVYQEKGLKDKERYKSEMLEYRSSYDSTVQQ 326
L+++E++ Y+EK DK+RY+ E Y ++ D ++
Sbjct: 65 ALSDSERRPYEEKAAADKKRYEDEKASYNAAQDEDEEE 102
>sp|Q0WNR6|ARID5_ARATH AT-rich interactive domain-containing protein 5 OS=Arabidopsis
thaliana GN=ARID5 PE=2 SV=1
Length = 434
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 47 QSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVV 106
Q + F +EAF+K +FK P G+ L+ +L+ V GG V + W++V
Sbjct: 143 QDQEAFIKEVEAFNKENFLEFKAPKFYGQPLNCLKLWRAVIKLGGYDVVTTSKLWRQVGE 202
Query: 107 VFNFPTTITSASFVLRKYYLSLLYHFEQ 134
F+ P T T+ S+ R +Y L +E+
Sbjct: 203 SFHPPKTCTTVSWTFRIFYEKALLEYEK 230
>sp|Q940Y3|ARID3_ARATH AT-rich interactive domain-containing protein 3 OS=Arabidopsis
thaliana GN=ARID3 PE=2 SV=1
Length = 786
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 52 FWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFP 111
F L++F + FK P G+ L+ +L+ VT GG KV + W++V F P
Sbjct: 500 FMKELDSFFRERNMDFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTGSKLWRQVGESFRPP 559
Query: 112 TTITSASFVLRKYYLSLLYHFEQ 134
T T+ S+ R +Y L +E+
Sbjct: 560 KTCTTVSWTFRGFYEKALLEYER 582
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +E ++K G ++KK+G +W+NL++ EKQ Y K K
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAK 148
Query: 305 DKERYKSEMLEYRS 318
KE+Y+ ++ +Y+S
Sbjct: 149 LKEKYEKDVADYKS 162
>sp|Q09441|YP83_CAEEL ARID domain-containing protein C08B11.3 OS=Caenorhabditis elegans
GN=C08B11.3 PE=4 SV=1
Length = 1244
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 52 FWATLEAFHKS-FGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 110
F+ +L F+K + K+P V G ++L+RL+ V + GG KV +W ++ +F
Sbjct: 30 FYNSLRMFYKRRWNATLKLPHVQGVEVNLYRLYDTVMALGGWQKVAASDKWSDIAEMFGC 89
Query: 111 PTTITSASFVLRKYYLSLLYHFEQV 135
I ++ Y+ L FEQV
Sbjct: 90 KDDILCGDHAIKIIYMRYLSKFEQV 114
>sp|Q62240|KDM5D_MOUSE Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2
Length = 1548
Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 64 GDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 123
G K+P V K LDL+ L V GG + +DRRW V N+P+ S +LR
Sbjct: 97 GSSLKIPNVERKILDLYSLNKIVMEEGGYEAICKDRRWARVAQRLNYPSGKNIGS-LLRS 155
Query: 124 YYLSLLYHFE 133
+Y ++Y +E
Sbjct: 156 HYERIIYPYE 165
>sp|Q24537|HMG2_DROME High mobility group protein DSP1 OS=Drosophila melanogaster GN=Dsp1
PE=2 SV=1
Length = 393
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 237 RKRSRLALRDPSRPKSNRSGYNFFFAEHYARLK---PHYYGQEKAISKKIGVLWSNLTEA 293
R + R ++DP+ PK + S + +F + ++K P + + I+K++G WS++
Sbjct: 258 RGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGD--IAKELGRKWSDVDPE 315
Query: 294 EKQVYQEKGLKDKERYKSEMLEYRSS 319
KQ Y+ +DK RY+ EM EY++S
Sbjct: 316 VKQKYESMAERDKARYEREMTEYKTS 341
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 228 NSAAPTHRRRKRSRLALRDPSRPKSNRSGYNFFFA---EHYARLKPHYYGQEKAISKKIG 284
NSA+P R ++ ++P+ + Y +F E + + P S+K
Sbjct: 165 NSASPMSR--------VKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCA 216
Query: 285 VLWSNLTEAEKQVYQEKGLKDKERYKSEMLEY 316
W + + EK+ + E KDK+RY++EM Y
Sbjct: 217 ERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNY 248
>sp|Q9NP66|HM20A_HUMAN High mobility group protein 20A OS=Homo sapiens GN=HMG20A PE=1 SV=1
Length = 347
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 220 HNVSQSSNNSAAPTHRRRKRSRLALRDPSRPKSNRSGYNFFFAEHYARLK---PHYYGQE 276
H Q S R+RK+ LRD + PKS +GY F E +L+ P E
Sbjct: 76 HEDEQRSKRGGWSKGRKRKK---PLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPE 132
Query: 277 KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319
I++ +G WS L EKQ Y ++ +DKERY E+ +Y+ +
Sbjct: 133 --ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKT 173
>sp|Q9DC33|HM20A_MOUSE High mobility group protein 20A OS=Mus musculus GN=Hmg20a PE=2 SV=1
Length = 346
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 237 RKRSRLALRDPSRPKSNRSGYNFFFAEHYARLK---PHYYGQEKAISKKIGVLWSNLTEA 293
RKR + LRD + PKS +GY F E +L+ P E I++ +G WS L
Sbjct: 90 RKRKK-PLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPE--ITRMLGNEWSKLPPE 146
Query: 294 EKQVYQEKGLKDKERYKSEMLEYRSS 319
EKQ Y ++ +DKERY E+ +Y+ +
Sbjct: 147 EKQRYLDEADRDKERYMKELEQYQKT 172
>sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2
SV=1
Length = 1545
Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 64 GDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 123
G K+P V + LDL+ L V GG + +DRRW V N+P S +LR
Sbjct: 97 GSSLKIPNVERRILDLYSLSKIVMEEGGYEAICKDRRWARVAQRLNYPAGKNIGS-LLRS 155
Query: 124 YYLSLLYHFE 133
+Y ++Y +E
Sbjct: 156 HYERIIYPYE 165
>sp|Q6DIJ5|HM20A_XENTR High mobility group protein 20A OS=Xenopus tropicalis GN=hmg20a
PE=2 SV=1
Length = 345
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 235 RRRKRSRLALRDPSRPKSNRSGYNFFFAEHYARLK---PHYYGQEKAISKKIGVLWSNLT 291
R+RKRS RD + PK+ +GY F E +L+ P E I++ +G WS L
Sbjct: 89 RKRKRS---PRDNNAPKAPLTGYVRFMNERREQLRTERPDVPFPE--ITRIVGSEWSKLP 143
Query: 292 EAEKQVYQEKGLKDKERYKSEMLEYRSS 319
EKQ Y ++ KDKERY E+ +Y+++
Sbjct: 144 AHEKQHYLDEAEKDKERYTKELQQYQNT 171
>sp|Q38JA7|KDM5C_CANFA Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2
SV=1
Length = 1556
Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 64 GDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 123
G K+P V + LDL+ L V GG + +DRRW V N+P S +LR
Sbjct: 97 GSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGS-LLRS 155
Query: 124 YYLSLLYHFE 133
+Y ++Y +E
Sbjct: 156 HYERIVYPYE 165
>sp|Q9USU7|YHHB_SCHPO HMG box-containing protein C28F2.11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC28F2.11 PE=1 SV=1
Length = 310
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 245 RDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE----KAISKKIGVLWSNLTEAEKQVYQE 300
RDP++PK S YN F + +K G++ K ++K + W +L+E +++ Y+E
Sbjct: 112 RDPAQPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEE 170
Query: 301 KGLKDKERYKSEMLEYRSSYD 321
+ K +E Y+ EM Y +S +
Sbjct: 171 EASKLREAYEEEMAAYNASKE 191
>sp|P41230|KDM5C_MOUSE Lysine-specific demethylase 5C OS=Mus musculus GN=Kdm5c PE=2 SV=4
Length = 1554
Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 64 GDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 123
G K+P V + LDL+ L V GG + +DRRW V N+P S +LR
Sbjct: 97 GSSLKIPNVERRILDLYSLSKIVVEEGGYETICKDRRWARVAQRLNYPPGKNIGS-LLRS 155
Query: 124 YYLSLLYHFE 133
+Y ++Y +E
Sbjct: 156 HYERIVYPYE 165
>sp|P41229|KDM5C_HUMAN Lysine-specific demethylase 5C OS=Homo sapiens GN=KDM5C PE=1 SV=2
Length = 1560
Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 64 GDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 123
G K+P V + LDL+ L V GG + +DRRW V N+P S +LR
Sbjct: 97 GSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGS-LLRS 155
Query: 124 YYLSLLYHFE 133
+Y ++Y +E
Sbjct: 156 HYERIVYPYE 165
>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2
Length = 207
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKA-ISKKIGVLWSNLTEAEKQVYQEKGLK 304
DP+ PK S + F +EH ++K + G +KK+G +WS +KQ Y++K K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAK 150
Query: 305 DKERYKSEMLEYRSSYDSTV 324
KE+Y+ ++ YR+ S
Sbjct: 151 LKEKYEKDIAAYRAKSKSDA 170
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 246 DPSRPKSNRSGYNFFFA---EHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKG 302
DP++P+ S Y +F E + + P S+K W ++ EK ++E
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 303 LKDKERYKSEMLEY 316
DK RY EM Y
Sbjct: 65 KGDKARYDREMKNY 78
>sp|Q80W03|TOX3_MOUSE TOX high mobility group box family member 3 OS=Mus musculus GN=Tox3
PE=2 SV=1
Length = 575
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEK-----AISKKIGVLWSNLTEAEKQVYQE 300
DP+ P+ S Y FF + A +K GQ +SK + +W +L E +KQVY+
Sbjct: 250 DPNEPQKPVSAYALFFRDTQAAIK----GQNPNATFGEVSKIVASMWDSLGEEQKQVYKR 305
Query: 301 KGLKDKERYKSEMLEYRSS 319
K K+ Y + YR+S
Sbjct: 306 KTEAAKKEYLKALAAYRAS 324
>sp|O15405|TOX3_HUMAN TOX high mobility group box family member 3 OS=Homo sapiens GN=TOX3
PE=1 SV=2
Length = 576
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEK-----AISKKIGVLWSNLTEAEKQVYQE 300
DP+ P+ S Y FF + A +K GQ +SK + +W +L E +KQVY+
Sbjct: 251 DPNEPQKPVSAYALFFRDTQAAIK----GQNPNATFGEVSKIVASMWDSLGEEQKQVYKR 306
Query: 301 KGLKDKERYKSEMLEYRSS 319
K K+ Y + YR+S
Sbjct: 307 KTEAAKKEYLKALAAYRAS 325
>sp|Q6AZF8|HM20A_XENLA High mobility group protein 20A OS=Xenopus laevis GN=hmg20a PE=2
SV=1
Length = 345
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 235 RRRKRSRLALRDPSRPKSNRSGYNFFFAEHYARLK---PHYYGQEKAISKKIGVLWSNLT 291
R+RKRS RD + PK+ +GY F E +L+ P E I++ +G WS L
Sbjct: 89 RKRKRS---PRDNNAPKAPLTGYVRFMNERREQLRTERPDVPFPE--ITRIVGSEWSKLP 143
Query: 292 EAEKQVYQEKGLKDKERYKSEMLEYRSS 319
EKQ Y ++ KDKERY E+ +Y+++
Sbjct: 144 AHEKQHYLDEAEKDKERYTKELQKYQNT 171
>sp|B7SBD2|TOX3_RAT TOX high mobility group box family member 3 OS=Rattus norvegicus
GN=Tox3 PE=1 SV=1
Length = 577
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQEK-----AISKKIGVLWSNLTEAEKQVYQE 300
DP+ P+ S Y FF + A +K GQ +SK + +W +L E +KQVY+
Sbjct: 250 DPNEPQKPVSAYALFFRDTQAAIK----GQNPNATFGEVSKIVASMWDSLGEEQKQVYKR 305
Query: 301 KGLKDKERYKSEMLEYRSS 319
K K+ Y + YR+S
Sbjct: 306 KTEAAKKEYLKALAAYRAS 324
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,793,645
Number of Sequences: 539616
Number of extensions: 5228095
Number of successful extensions: 91602
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 29510
Number of HSP's gapped (non-prelim): 43340
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)