Query 020460
Match_columns 326
No_of_seqs 301 out of 1562
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 03:18:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ig6_A MRF-2, modulator recogn 100.0 9.5E-29 3.2E-33 202.0 7.2 100 47-147 2-102 (107)
2 2jrz_A Histone demethylase jar 99.9 2.1E-27 7.2E-32 197.1 10.7 96 42-138 5-100 (117)
3 2eqy_A RBP2 like, jumonji, at 99.9 2.9E-27 9.9E-32 197.6 11.3 96 40-136 5-100 (122)
4 2jxj_A Histone demethylase jar 99.9 1.5E-27 5E-32 191.2 8.2 91 45-136 4-94 (96)
5 2cxy_A BAF250B subunit, HBAF25 99.9 3.4E-27 1.2E-31 197.9 10.7 98 47-145 20-118 (125)
6 2rq5_A Protein jumonji; develo 99.9 3E-27 1E-31 197.1 10.0 88 48-135 12-100 (121)
7 2lm1_A Lysine-specific demethy 99.9 2.8E-27 9.6E-32 193.1 8.8 94 42-136 9-102 (107)
8 1c20_A DEAD ringer protein; DN 99.9 1.5E-26 5.2E-31 194.7 10.2 91 47-137 21-112 (128)
9 1kkx_A Transcription regulator 99.9 2.4E-26 8.3E-31 192.3 9.1 89 42-135 12-101 (123)
10 2li6_A SWI/SNF chromatin-remod 99.9 3.3E-26 1.1E-30 189.6 8.9 96 41-142 12-108 (116)
11 2kk0_A AT-rich interactive dom 99.9 7.5E-26 2.6E-30 194.3 9.9 105 33-137 17-124 (145)
12 2co9_A Thymus high mobility gr 99.9 3.5E-22 1.2E-26 161.5 10.7 85 239-323 7-92 (102)
13 2eqz_A High mobility group pro 99.9 5.5E-22 1.9E-26 155.3 10.3 79 239-317 5-86 (86)
14 1k99_A Upstream binding factor 99.9 6.3E-22 2.1E-26 159.3 9.2 82 241-322 2-84 (99)
15 1cg7_A Protein (NON histone pr 99.9 2.5E-22 8.6E-27 159.6 5.8 84 237-320 8-92 (93)
16 1hme_A High mobility group pro 99.8 9.2E-22 3.1E-26 150.5 6.7 76 244-319 1-77 (77)
17 2crj_A SWI/SNF-related matrix- 99.8 5.9E-21 2E-25 151.3 9.6 76 244-319 2-78 (92)
18 2cs1_A PMS1 protein homolog 1; 99.8 4.8E-21 1.6E-25 151.8 8.8 78 244-321 2-80 (92)
19 2e6o_A HMG box-containing prot 99.8 2.9E-21 9.8E-26 151.6 6.7 76 242-317 10-86 (87)
20 1wgf_A Upstream binding factor 99.8 7E-22 2.4E-26 156.2 3.2 78 238-315 9-87 (90)
21 2lhj_A High mobility group pro 99.8 7.9E-22 2.7E-26 157.8 3.3 85 235-319 8-95 (97)
22 1aab_A High mobility group pro 99.8 3E-21 1E-25 149.9 6.0 76 244-319 2-80 (83)
23 1hry_A Human SRY; DNA, DNA-bin 99.8 5.9E-21 2E-25 145.7 6.8 73 246-318 1-74 (76)
24 3nm9_A HMG-D, high mobility gr 99.8 2E-20 6.9E-25 142.0 8.8 72 247-320 1-73 (73)
25 4a3n_A Transcription factor SO 99.8 2.9E-20 9.8E-25 139.7 6.3 70 248-317 1-71 (71)
26 2gzk_A Sex-determining region 99.8 1.2E-19 4E-24 156.8 10.7 79 241-319 80-159 (159)
27 1wz6_A HMG-box transcription f 99.8 1.9E-20 6.4E-25 145.1 4.9 75 245-319 3-78 (82)
28 1v64_A Nucleolar transcription 99.8 9.6E-20 3.3E-24 148.9 9.1 80 239-322 6-87 (108)
29 1wxl_A Single-strand recogniti 99.8 4.4E-20 1.5E-24 140.1 6.4 71 247-319 1-72 (73)
30 1j46_A SRY, sex-determining re 99.8 7E-20 2.4E-24 143.0 7.7 75 246-320 1-76 (85)
31 1ckt_A High mobility group 1 p 99.8 6.9E-20 2.4E-24 137.8 6.8 68 249-316 1-71 (71)
32 3fgh_A Transcription factor A, 99.8 1.6E-19 5.5E-24 134.7 8.8 66 248-316 1-66 (67)
33 1gt0_D Transcription factor SO 99.8 1.2E-19 4E-24 139.9 7.6 73 248-320 1-74 (80)
34 4euw_A Transcription factor SO 99.8 1.1E-19 3.8E-24 147.9 7.4 76 244-319 24-100 (106)
35 3u2b_C Transcription factor SO 99.8 1.2E-19 4.3E-24 139.1 7.0 72 248-319 1-73 (79)
36 3f27_D Transcription factor SO 99.8 1.1E-19 3.7E-24 140.9 6.6 75 246-320 3-78 (83)
37 2lef_A LEF-1 HMG, protein (lym 99.8 2.3E-19 7.8E-24 140.3 7.4 72 248-319 1-73 (86)
38 2yrq_A High mobility group pro 99.8 6.2E-19 2.1E-23 154.5 9.9 78 242-319 94-172 (173)
39 1i11_A Transcription factor SO 99.8 1.8E-19 6.2E-24 139.2 5.3 73 247-319 2-75 (81)
40 1l8y_A Upstream binding factor 99.8 5.6E-19 1.9E-23 140.0 7.5 74 248-322 3-77 (91)
41 1v63_A Nucleolar transcription 99.8 3.5E-18 1.2E-22 137.9 10.3 76 246-323 5-81 (101)
42 2yrq_A High mobility group pro 99.7 3.6E-18 1.2E-22 149.7 9.0 81 239-319 5-88 (173)
43 3tq6_A Transcription factor A, 99.7 1.8E-18 6.3E-23 156.9 4.4 77 241-320 106-182 (214)
44 3tmm_A Transcription factor A, 99.7 1.8E-18 6.2E-23 159.3 3.1 77 241-320 138-214 (238)
45 3tmm_A Transcription factor A, 99.7 1.8E-17 6.1E-22 152.7 7.6 80 242-321 34-114 (238)
46 2cto_A Novel protein; high mob 99.7 3.2E-17 1.1E-21 130.6 5.2 69 244-314 5-77 (93)
47 2d7l_A WD repeat and HMG-box D 99.7 8.8E-17 3E-21 124.9 6.0 62 245-306 1-64 (81)
48 2yuk_A Myeloid/lymphoid or mix 99.6 1.3E-17 4.4E-22 132.1 0.6 73 239-312 12-84 (90)
49 3tq6_A Transcription factor A, 99.6 1.9E-16 6.6E-21 143.6 8.5 76 246-321 6-82 (214)
50 2gzk_A Sex-determining region 99.5 6.1E-15 2.1E-19 127.1 6.7 72 247-318 2-74 (159)
51 1ity_A TRF1; helix-turn-helix, 78.6 2.5 8.4E-05 30.5 4.2 41 81-131 20-60 (69)
52 1gvd_A MYB proto-oncogene prot 74.0 2.3 7.9E-05 28.8 2.8 39 81-131 13-51 (52)
53 2dim_A Cell division cycle 5-l 72.7 3.2 0.00011 30.0 3.5 39 81-131 19-57 (70)
54 1guu_A C-MYB, MYB proto-oncoge 72.4 3.5 0.00012 27.9 3.4 39 81-131 13-51 (52)
55 1x41_A Transcriptional adaptor 71.3 4.4 0.00015 28.4 3.9 37 82-130 19-55 (60)
56 1w0t_A Telomeric repeat bindin 68.4 7 0.00024 26.5 4.3 39 81-129 12-50 (53)
57 2d9a_A B-MYB, MYB-related prot 68.4 4.7 0.00016 28.1 3.5 39 81-131 18-56 (60)
58 2elk_A SPCC24B10.08C protein; 58.9 11 0.00036 26.2 3.9 39 81-130 19-57 (58)
59 3sjm_A Telomeric repeat-bindin 57.9 13 0.00045 26.5 4.3 40 81-130 21-60 (64)
60 2yum_A ZZZ3 protein, zinc fing 57.0 11 0.00037 27.4 3.8 45 81-132 18-62 (75)
61 2din_A Cell division cycle 5-l 56.5 18 0.00061 25.5 4.8 38 82-133 20-57 (66)
62 1bax_A M-PMV MA, M-PMV matrix 56.1 12 0.00041 29.2 4.0 53 50-109 9-64 (94)
63 2lpy_A Matrix protein P10; GAG 54.6 35 0.0012 27.8 6.8 56 47-109 5-63 (124)
64 2cu7_A KIAA1915 protein; nucle 49.3 21 0.0007 25.8 4.2 40 81-133 19-58 (72)
65 2qgu_A Probable signal peptide 46.3 14 0.00048 32.4 3.5 42 277-318 75-118 (211)
66 2k9n_A MYB24; R2R3 domain, DNA 46.0 18 0.0006 28.1 3.6 38 81-130 11-48 (107)
67 2yus_A SWI/SNF-related matrix- 45.4 17 0.00059 27.0 3.3 35 81-128 28-62 (79)
68 1gv2_A C-MYB, MYB proto-oncoge 37.8 20 0.00069 27.4 2.8 38 81-130 14-51 (105)
69 2cqq_A RSGI RUH-037, DNAJ homo 34.7 55 0.0019 23.8 4.6 27 99-131 32-58 (72)
70 2k9n_A MYB24; R2R3 domain, DNA 33.5 49 0.0017 25.4 4.4 40 81-133 63-102 (107)
71 1h8a_C AMV V-MYB, MYB transfor 31.9 39 0.0013 26.8 3.7 39 80-130 36-74 (128)
72 3ukx_C Bimax2 peptide; arm rep 29.9 31 0.0011 20.3 1.9 8 246-253 17-24 (28)
73 2o37_A Protein SIS1; HSP40, J- 29.0 60 0.002 24.2 4.1 36 263-298 28-66 (92)
74 2cqr_A RSGI RUH-043, DNAJ homo 23.7 58 0.002 23.8 3.0 27 99-130 42-68 (73)
75 2qsa_A DNAJ homolog DNJ-2; J-d 23.1 49 0.0017 25.4 2.7 57 264-320 37-103 (109)
76 2do5_A Splicing factor 3B subu 22.8 81 0.0028 21.8 3.3 28 47-74 29-56 (58)
77 3zqc_A MYB3; transcription-DNA 21.5 61 0.0021 25.8 3.0 38 81-131 64-101 (131)
78 2ckx_A NGTRF1, telomere bindin 21.0 1.3E+02 0.0046 22.4 4.6 40 81-130 10-51 (83)
79 2och_A Hypothetical protein DN 20.8 98 0.0034 21.7 3.8 34 263-296 28-64 (73)
80 2ltp_A Nuclear receptor corepr 26.0 21 0.00072 27.0 0.0 29 100-133 37-65 (89)
81 3osg_A MYB21; transcription-DN 20.2 76 0.0026 25.1 3.3 37 81-130 21-57 (126)
No 1
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=99.95 E-value=9.5e-29 Score=201.99 Aligned_cols=100 Identities=21% Similarity=0.342 Sum_probs=93.3
Q ss_pred hcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHH
Q 020460 47 QSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYY 125 (326)
Q Consensus 47 ~~~~~F~~~L~~F~~~rG~~l-~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y 125 (326)
+|++.|+++|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||++++|.+||+.||++.+++++++.||++|
T Consensus 2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y 81 (107)
T 1ig6_A 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY 81 (107)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 578999999999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHhhhcCCCCCCC
Q 020460 126 LSLLYHFEQVYYFRREAPSSSM 147 (326)
Q Consensus 126 ~k~L~~fE~~~~~~~~~~~~~~ 147 (326)
++||++||+ ++.++++.+.++
T Consensus 82 ~k~L~~yE~-~~~~~~~~~~p~ 102 (107)
T 1ig6_A 82 ERLILPYER-FIKGEEDKPLPP 102 (107)
T ss_dssp HHHTTTTHH-HHHHHTSSSSCT
T ss_pred HHHHHHHHH-HHcCCCCCCCCC
Confidence 999999999 556776665554
No 2
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=99.94 E-value=2.1e-27 Score=197.07 Aligned_cols=96 Identities=26% Similarity=0.438 Sum_probs=91.1
Q ss_pred chhhhhcHHHHHHHHHHHHHhcCCCCCCCeeCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHH
Q 020460 42 YEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVL 121 (326)
Q Consensus 42 ~e~~~~~~~~F~~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~L 121 (326)
.++.++++..|++.|.+||+.+|+++++|+|+|++||||+||.+|+++|||++||++++|.+||+.||++++ +++++.|
T Consensus 5 le~~~r~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~-~~a~~~L 83 (117)
T 2jrz_A 5 LEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGSLL 83 (117)
T ss_dssp HHTSTTTHHHHHHHHHHHHHTTTSCCCCCEETTEECCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTT-CTHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCC-CcHHHHH
Confidence 466789999999999999999999999999999999999999999999999999999999999999999987 8899999
Q ss_pred HHHHHHhhHHHHHHHhh
Q 020460 122 RKYYLSLLYHFEQVYYF 138 (326)
Q Consensus 122 k~~Y~k~L~~fE~~~~~ 138 (326)
|++|.+||++||++..-
T Consensus 84 k~~Y~k~L~~yE~~~~~ 100 (117)
T 2jrz_A 84 RSHYERIVYPYEMYQSG 100 (117)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999997543
No 3
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.94 E-value=2.9e-27 Score=197.61 Aligned_cols=96 Identities=23% Similarity=0.401 Sum_probs=90.3
Q ss_pred CCchhhhhcHHHHHHHHHHHHHhcCCCCCCCeeCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHH
Q 020460 40 AKYEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASF 119 (326)
Q Consensus 40 ~~~e~~~~~~~~F~~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~ 119 (326)
...++.+++++.|+++|.+||+.+|++|++|+|+||+||||+||.+|+++|||++||++++|.+|++.||++.+ +++++
T Consensus 5 nele~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDLy~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~-~~~~~ 83 (122)
T 2eqy_A 5 SSGEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPG-KAVGS 83 (122)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHTCCCCCCBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSS-SHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHcCCCCCCCeECCEeccHHHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCC-CcHHH
Confidence 44677889999999999999999999999999999999999999999999999999999999999999999974 67889
Q ss_pred HHHHHHHHhhHHHHHHH
Q 020460 120 VLRKYYLSLLYHFEQVY 136 (326)
Q Consensus 120 ~Lk~~Y~k~L~~fE~~~ 136 (326)
.||++|++||++||++.
T Consensus 84 ~Lr~~Y~k~L~~yE~~~ 100 (122)
T 2eqy_A 84 HIRGHYERILNPYNLFL 100 (122)
T ss_dssp HHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 99999999999999953
No 4
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=99.94 E-value=1.5e-27 Score=191.19 Aligned_cols=91 Identities=26% Similarity=0.419 Sum_probs=86.5
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCCCCCeeCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHH
Q 020460 45 IAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKY 124 (326)
Q Consensus 45 ~~~~~~~F~~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~ 124 (326)
.+++++.|+++|.+||+.+|+++++|+|+|++||||+||.+|+++|||++||++++|.+|++.||++.++ +++..||++
T Consensus 4 ~~r~~~~F~~~L~~F~~~~g~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~-~~~~~Lk~~ 82 (96)
T 2jxj_A 4 GSRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGK-GTGSLLKSH 82 (96)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCCCCCCEETTEECCCHHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCS-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCCcCCCEeccHHHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcC-cHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999876 678899999
Q ss_pred HHHhhHHHHHHH
Q 020460 125 YLSLLYHFEQVY 136 (326)
Q Consensus 125 Y~k~L~~fE~~~ 136 (326)
|++||++||++.
T Consensus 83 Y~k~L~~yE~~~ 94 (96)
T 2jxj_A 83 YERILYPYELFQ 94 (96)
T ss_dssp HTTTTHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999874
No 5
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=99.94 E-value=3.4e-27 Score=197.91 Aligned_cols=98 Identities=33% Similarity=0.549 Sum_probs=91.6
Q ss_pred hcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHH
Q 020460 47 QSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYY 125 (326)
Q Consensus 47 ~~~~~F~~~L~~F~~~rG~~l-~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y 125 (326)
.+++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||++++|.+||+.||++. ++++++.||++|
T Consensus 20 ~~~~~Fl~~L~~F~~~rG~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~s~~~~Lk~~Y 98 (125)
T 2cxy_A 20 PERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGT-SSSAASSLKKQY 98 (125)
T ss_dssp TTHHHHHHHHHHHHHHTTCCCCBCCEETTEECCHHHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCS-SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCCCCCCeeECCEeecHHHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCC-CCcHHHHHHHHH
Confidence 467789999999999999999 799999999999999999999999999999999999999999996 589999999999
Q ss_pred HHhhHHHHHHHhhhcCCCCC
Q 020460 126 LSLLYHFEQVYYFRREAPSS 145 (326)
Q Consensus 126 ~k~L~~fE~~~~~~~~~~~~ 145 (326)
++||++||+++..|+.+|..
T Consensus 99 ~k~L~~yE~~~~~g~~~p~~ 118 (125)
T 2cxy_A 99 IQYLFAFECKIERGEEPPPE 118 (125)
T ss_dssp HHHTHHHHHHHHHCCCCCCS
T ss_pred HHHHHHHHHHHHcCCCCChh
Confidence 99999999999888875543
No 6
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=99.94 E-value=3e-27 Score=197.14 Aligned_cols=88 Identities=22% Similarity=0.416 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHHHHhcCCCCC-CCeeCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 020460 48 SSDLFWATLEAFHKSFGDKFK-VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYL 126 (326)
Q Consensus 48 ~~~~F~~~L~~F~~~rG~~l~-~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~ 126 (326)
-...|+++|.+||+.+|+||. +|+|+|++||||+||.+|+++|||++||++++|.+||..||||.+++++++.||.+|.
T Consensus 12 ~~~~Fl~~L~~F~~~rGtpl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~ 91 (121)
T 2rq5_A 12 PNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYC 91 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCCCCCcCCCEeccHHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHH
Confidence 357899999999999999995 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHH
Q 020460 127 SLLYHFEQV 135 (326)
Q Consensus 127 k~L~~fE~~ 135 (326)
+||++||++
T Consensus 92 k~L~~YE~~ 100 (121)
T 2rq5_A 92 QYLLSYDSL 100 (121)
T ss_dssp TTHHHHHHC
T ss_pred HHhHHHHCc
Confidence 999999985
No 7
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.94 E-value=2.8e-27 Score=193.10 Aligned_cols=94 Identities=29% Similarity=0.469 Sum_probs=89.3
Q ss_pred chhhhhcHHHHHHHHHHHHHhcCCCCCCCeeCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHH
Q 020460 42 YEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVL 121 (326)
Q Consensus 42 ~e~~~~~~~~F~~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~L 121 (326)
.++.+++++.|+++|.+||+.+|+++++|+|+|++||||+||.+|+++|||++||++++|.+||+.||++.+ +++++.|
T Consensus 9 l~~~~~~~~~F~~~L~~F~~~~g~~l~~P~i~gk~vdL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~-~~~~~~l 87 (107)
T 2lm1_A 9 LEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSS-KSVGATL 87 (107)
T ss_dssp SCCSSHHHHHHHHHHHHHHTTTCCCCSCCCTTTSSCCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCC-HHHHHHH
T ss_pred ccCCchHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCC-CcHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999999999999999975 8899999
Q ss_pred HHHHHHhhHHHHHHH
Q 020460 122 RKYYLSLLYHFEQVY 136 (326)
Q Consensus 122 k~~Y~k~L~~fE~~~ 136 (326)
|++|.+||++||++.
T Consensus 88 k~~Y~k~L~~yE~~~ 102 (107)
T 2lm1_A 88 KAHYERILHPFEVYT 102 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHH
Confidence 999999999999975
No 8
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=99.93 E-value=1.5e-26 Score=194.67 Aligned_cols=91 Identities=33% Similarity=0.584 Sum_probs=88.5
Q ss_pred hcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHH
Q 020460 47 QSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYY 125 (326)
Q Consensus 47 ~~~~~F~~~L~~F~~~rG~~l-~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y 125 (326)
++++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||++++|.+||+.||++.+++++++.||++|
T Consensus 21 ~~~~~Fl~~L~~F~~~rG~~l~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y 100 (128)
T 1c20_A 21 PKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQY 100 (128)
T ss_dssp HHHHHHHHHHHHHHTTTSSCSSCCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCccceeECCEeecHHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 688999999999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHh
Q 020460 126 LSLLYHFEQVYY 137 (326)
Q Consensus 126 ~k~L~~fE~~~~ 137 (326)
.+||++||+++.
T Consensus 101 ~k~L~~yE~~~~ 112 (128)
T 1c20_A 101 MKYLYPYECEKK 112 (128)
T ss_dssp HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 9
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=99.93 E-value=2.4e-26 Score=192.28 Aligned_cols=89 Identities=21% Similarity=0.391 Sum_probs=83.5
Q ss_pred chhhhhcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHH
Q 020460 42 YEDIAQSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFV 120 (326)
Q Consensus 42 ~e~~~~~~~~F~~~L~~F~~~rG~~l-~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~ 120 (326)
|++.+++++.|++.|.+||+.+|++| ++|+|+|++||||+||.+|+++|||++||++++|.+||+.||+++ ++.
T Consensus 12 ~~~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-----~~~ 86 (123)
T 1kkx_A 12 HGSNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQQ 86 (123)
T ss_dssp ---CCCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----HHH
T ss_pred cCCcchhHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHhccccccHHHHHHHHCCCh-----HHH
Confidence 57888999999999999999999999 799999999999999999999999999999999999999999996 679
Q ss_pred HHHHHHHhhHHHHHH
Q 020460 121 LRKYYLSLLYHFEQV 135 (326)
Q Consensus 121 Lk~~Y~k~L~~fE~~ 135 (326)
||++|++||++||++
T Consensus 87 Lr~~Y~k~L~~yE~~ 101 (123)
T 1kkx_A 87 LESIYFRILLPYERH 101 (123)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999994
No 10
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.3e-26 Score=189.55 Aligned_cols=96 Identities=22% Similarity=0.384 Sum_probs=88.0
Q ss_pred CchhhhhcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHH
Q 020460 41 KYEDIAQSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASF 119 (326)
Q Consensus 41 ~~e~~~~~~~~F~~~L~~F~~~rG~~l-~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~ 119 (326)
..|...++++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||++++|.+||+.||+++ ++
T Consensus 12 ~~e~~~~~~~~F~~~L~~F~~~~G~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-----~~ 86 (116)
T 2li6_A 12 STELNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQ 86 (116)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHTTTSCCSSCCCCBSCCCSTTHHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-----TT
T ss_pred cccccchhHHHHHHHHHHHHHHcCCCCCCCceECCEeecHHHHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-----HH
Confidence 356667899999999999999999999 799999999999999999999999999999999999999999997 46
Q ss_pred HHHHHHHHhhHHHHHHHhhhcCC
Q 020460 120 VLRKYYLSLLYHFEQVYYFRREA 142 (326)
Q Consensus 120 ~Lk~~Y~k~L~~fE~~~~~~~~~ 142 (326)
.||.+|.+||++||+ |+.+.++
T Consensus 87 ~Lr~~Y~k~L~~yE~-~~~~~~g 108 (116)
T 2li6_A 87 QLESIYFRILLPYER-HMISQEG 108 (116)
T ss_dssp HHHHHHHHHHSHHHH-HHHHTTC
T ss_pred HHHHHHHHHHHHHHH-HHhCccc
Confidence 999999999999999 4555544
No 11
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.93 E-value=7.5e-26 Score=194.33 Aligned_cols=105 Identities=32% Similarity=0.548 Sum_probs=93.0
Q ss_pred CCCCCCCCCchhhh--hcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhC
Q 020460 33 SYYPPPTAKYEDIA--QSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFN 109 (326)
Q Consensus 33 ~~~p~p~~~~e~~~--~~~~~F~~~L~~F~~~rG~~l-~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~ 109 (326)
..+++......++. .+++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||++++|.+||+.||
T Consensus 17 f~F~~r~q~L~eL~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg 96 (145)
T 2kk0_A 17 WTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLN 96 (145)
T ss_dssp CCCCCCCTHHHHTTCCHHHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHHTCHHHHHHHTCHHHHHHHTT
T ss_pred ceecCccccHhhccCchhHHHHHHHHHHHHHHcCCCCccceeECCEEecHHHHHHHHHHhCCHHHhcccCcHHHHHHHhC
Confidence 34445444433332 347999999999999999999 799999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhhHHHHHHHh
Q 020460 110 FPTTITSASFVLRKYYLSLLYHFEQVYY 137 (326)
Q Consensus 110 ~~~~~t~as~~Lk~~Y~k~L~~fE~~~~ 137 (326)
++.+++++++.||++|++||++||+...
T Consensus 97 ~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~ 124 (145)
T 2kk0_A 97 LPTSITSAAFTLRTQYMKYLYPYECEKR 124 (145)
T ss_dssp CCTTSTTHHHHHHHHHHHHSSHHHHHHT
T ss_pred CCCCcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999843
No 12
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=3.5e-22 Score=161.49 Aligned_cols=85 Identities=29% Similarity=0.513 Sum_probs=79.4
Q ss_pred cccccCCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020460 239 RSRLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYR 317 (326)
Q Consensus 239 k~~kk~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk 317 (326)
+++++++||++||||+|||+||++++|.+|+.+||++. .+|+++||++|++|+++||++|+++|++++++|..+|++|+
T Consensus 7 ~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~ 86 (102)
T 2co9_A 7 GKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYR 86 (102)
T ss_dssp CSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hcCCcc
Q 020460 318 SSYDST 323 (326)
Q Consensus 318 ~~~~~~ 323 (326)
..+...
T Consensus 87 ~~~~~~ 92 (102)
T 2co9_A 87 ASLVSK 92 (102)
T ss_dssp HHHTSS
T ss_pred hhcccc
Confidence 976543
No 13
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=5.5e-22 Score=155.30 Aligned_cols=79 Identities=32% Similarity=0.472 Sum_probs=74.7
Q ss_pred cccccCCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc---hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHH
Q 020460 239 RSRLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE---KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLE 315 (326)
Q Consensus 239 k~~kk~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~---~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~ 315 (326)
+++++++||++||||+|||+||++++|.+++.++|++. .||+++||++|++|+++||++|+++|++++++|..+|++
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556789999999999999999999999999999985 899999999999999999999999999999999999999
Q ss_pred HH
Q 020460 316 YR 317 (326)
Q Consensus 316 Yk 317 (326)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 95
No 14
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.86 E-value=6.3e-22 Score=159.31 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=78.1
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020460 241 RLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 241 ~kk~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
+++++||++||||+|||+||++++|.+|+.++|++. .||+++||++|++||++||++|+++|++++++|..+|++|+++
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~ 81 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED 81 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999 9999999999999999999999999999999999999999997
Q ss_pred CCc
Q 020460 320 YDS 322 (326)
Q Consensus 320 ~~~ 322 (326)
..+
T Consensus 82 ~P~ 84 (99)
T 1k99_A 82 HPD 84 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 15
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.86 E-value=2.5e-22 Score=159.64 Aligned_cols=84 Identities=35% Similarity=0.535 Sum_probs=79.1
Q ss_pred cccccccCCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHH
Q 020460 237 RKRSRLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLE 315 (326)
Q Consensus 237 kkk~~kk~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~ 315 (326)
+++++++++|+++||||+|||+||++++|..++.+||++. .||+++||++|++|+++||++|+++|++++++|..+|++
T Consensus 8 k~~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~ 87 (93)
T 1cg7_A 8 KKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKEL 87 (93)
T ss_dssp CCCCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHH
T ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667889999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHhcC
Q 020460 316 YRSSY 320 (326)
Q Consensus 316 Yk~~~ 320 (326)
|+++.
T Consensus 88 Y~~~~ 92 (93)
T 1cg7_A 88 YNATL 92 (93)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 99864
No 16
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.85 E-value=9.2e-22 Score=150.53 Aligned_cols=76 Identities=32% Similarity=0.616 Sum_probs=73.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020460 244 LRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 244 ~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
++||++||||+|||+||++++|..++.++|++. .+|+++||++|++||++||++|+++|++++++|..+|++|+++
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k 77 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 77 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 479999999999999999999999999999999 9999999999999999999999999999999999999999863
No 17
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.84 E-value=5.9e-21 Score=151.34 Aligned_cols=76 Identities=32% Similarity=0.517 Sum_probs=73.9
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020460 244 LRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 244 ~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
.+||++||||+|||+||++++|.+|+.++|++. .+|+++||++|++|+++||++|+++|++++++|.++|++|+..
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~ 78 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQS 78 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 579999999999999999999999999999999 9999999999999999999999999999999999999999974
No 18
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.8e-21 Score=151.84 Aligned_cols=78 Identities=28% Similarity=0.343 Sum_probs=74.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020460 244 LRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSYD 321 (326)
Q Consensus 244 ~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~~~ 321 (326)
..++++||||+|||+||++++|.+|+.+||++. .||+++||++|++|+++||++|+++|++++++|.++|++|++++.
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 357899999999999999999999999999999 999999999999999999999999999999999999999998764
No 19
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=2.9e-21 Score=151.63 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=73.5
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020460 242 LALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYR 317 (326)
Q Consensus 242 kk~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk 317 (326)
++.+|+++||||+||||||++++|.+|+.++|++. .+|+++||++|++|+++||++|+++|++++++|++++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 46789999999999999999999999999999999 99999999999999999999999999999999999999986
No 20
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.83 E-value=7e-22 Score=156.17 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=72.8
Q ss_pred ccccccCCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHH
Q 020460 238 KRSRLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLE 315 (326)
Q Consensus 238 kk~~kk~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~ 315 (326)
++++++++||++||||+|||+||++++|.+|+.++|++. .||+++||++|++|+++||++|+++|++++++|.++|..
T Consensus 9 ~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 87 (90)
T 1wgf_A 9 PSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGP 87 (90)
T ss_dssp SCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSS
T ss_pred CCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666789999999999999999999999999999999 999999999999999999999999999999999987653
No 21
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.83 E-value=7.9e-22 Score=157.83 Aligned_cols=85 Identities=33% Similarity=0.517 Sum_probs=79.1
Q ss_pred cccccccccCCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc---hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHH
Q 020460 235 RRRKRSRLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE---KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKS 311 (326)
Q Consensus 235 ~kkkk~~kk~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~---~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~ 311 (326)
+.+++++++++||++||||+|||+||++++|.+++.+||++. .+|+++||++|++|+++||++|+++|++++++|..
T Consensus 8 ~~k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~ 87 (97)
T 2lhj_A 8 TGVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYER 87 (97)
T ss_dssp SSCCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHH
T ss_pred ccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 334556777899999999999999999999999999999975 89999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 020460 312 EMLEYRSS 319 (326)
Q Consensus 312 em~~Yk~~ 319 (326)
+|++|+++
T Consensus 88 e~~~y~~~ 95 (97)
T 2lhj_A 88 EKAEYAQR 95 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999975
No 22
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.83 E-value=3e-21 Score=149.89 Aligned_cols=76 Identities=28% Similarity=0.472 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc---hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020460 244 LRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE---KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 244 ~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~---~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
++||++||||+|||+||++++|.+++.+||++. .+|+++||++|++|+++||++|+++|++++++|..+|++|+..
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 579999999999999999999999999999985 8999999999999999999999999999999999999999875
No 23
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.83 E-value=5.9e-21 Score=145.68 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=69.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 020460 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRS 318 (326)
Q Consensus 246 dp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~ 318 (326)
||++||||+|||+||++++|.+++.++|++. .+|+++||++|++|+++||++|+++|++++++|..+|++|+-
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 74 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 6889999999999999999999999999999 999999999999999999999999999999999999999974
No 24
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.82 E-value=2e-20 Score=141.96 Aligned_cols=72 Identities=22% Similarity=0.462 Sum_probs=69.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020460 247 PSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSY 320 (326)
Q Consensus 247 p~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~~ 320 (326)
.++||||+|||+||++++|.+|+.+||++. .+|+++||++|++|++ |++|+++|++++++|+++|++|++++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~kg 73 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEANG 73 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999999999999999 9999999999999998 99999999999999999999999863
No 25
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.80 E-value=2.9e-20 Score=139.66 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=62.6
Q ss_pred CCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020460 248 SRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYR 317 (326)
Q Consensus 248 ~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk 317 (326)
++||||+|||+||++++|.+++.++|++. .+|+++||++|++||++||++|+++|++++++|..+|++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 47999999999999999999999999999 99999999999999999999999999999999999999996
No 26
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.80 E-value=1.2e-19 Score=156.81 Aligned_cols=79 Identities=30% Similarity=0.593 Sum_probs=75.5
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020460 241 RLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 241 ~kk~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
+++.+||++||||+|||+||++++|.+++.+||+++ .+|+++||++|++|+++||++|+++|++++++|.++|++|+++
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 159 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 159 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345789999999999999999999999999999999 9999999999999999999999999999999999999999864
No 27
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.80 E-value=1.9e-20 Score=145.12 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=72.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020460 245 RDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 245 kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
.|+++||||+|||+||++++|.+++.++|++. .+|+++||++|++|+++||++|+++|++++++|.++|++|+.+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~ 78 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSG 78 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcC
Confidence 57889999999999999999999999999999 9999999999999999999999999999999999999999865
No 28
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.80 E-value=9.6e-20 Score=148.87 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=73.6
Q ss_pred cccccCCCCCCC-CCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020460 239 RSRLALRDPSRP-KSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEY 316 (326)
Q Consensus 239 k~~kk~kdp~~P-KrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Y 316 (326)
.+.++.+|+++| |||+|||+||++++|.+++ ++. .||+++||++|++|+++||++|+++|++++++|+.+|++|
T Consensus 6 ~~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y 81 (108)
T 1v64_A 6 SGQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRF 81 (108)
T ss_dssp SCCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999 9999999999999999988 567 9999999999999999999999999999999999999999
Q ss_pred HhcCCc
Q 020460 317 RSSYDS 322 (326)
Q Consensus 317 k~~~~~ 322 (326)
++.+..
T Consensus 82 ~~~~~~ 87 (108)
T 1v64_A 82 LESLPE 87 (108)
T ss_dssp HHHSCH
T ss_pred HhhCCH
Confidence 997754
No 29
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.80 E-value=4.4e-20 Score=140.09 Aligned_cols=71 Identities=27% Similarity=0.552 Sum_probs=68.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020460 247 PSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 247 p~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
|++||||+|||++|++++|.+++.+||++. .||+++||++|++| +||++|+++|++++++|.++|++|++.
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 679999999999999999999999999999 99999999999999 999999999999999999999999864
No 30
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.80 E-value=7e-20 Score=143.01 Aligned_cols=75 Identities=20% Similarity=0.254 Sum_probs=71.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020460 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSY 320 (326)
Q Consensus 246 dp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~~ 320 (326)
.|++||||+|||+||++++|.+|+.++|++. .+|+++||++|++||++||++|+++|++++++|..+|++|+.+-
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 76 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 3789999999999999999999999999999 99999999999999999999999999999999999999998654
No 31
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.80 E-value=6.9e-20 Score=137.84 Aligned_cols=68 Identities=28% Similarity=0.484 Sum_probs=65.9
Q ss_pred CCCCCCChHHHHHHHHHHHhhccCCCCc---hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020460 249 RPKSNRSGYNFFFAEHYARLKPHYYGQE---KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEY 316 (326)
Q Consensus 249 ~PKrP~SaY~lF~~e~r~~lk~e~p~~~---~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Y 316 (326)
+||||+|||++|++++|..++.+||++. .+|+++||++|++|+++||++|+++|++++++|.++|++|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5999999999999999999999999985 9999999999999999999999999999999999999887
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=134.67 Aligned_cols=66 Identities=32% Similarity=0.596 Sum_probs=64.1
Q ss_pred CCCCCCCChHHHHHHHHHHHhhccCCCCchHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020460 248 SRPKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEY 316 (326)
Q Consensus 248 ~~PKrP~SaY~lF~~e~r~~lk~e~p~~~~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Y 316 (326)
++||||+|||++|++++|.+++.++| .+|+++||++|++||++||++|+++|++++++|+++|++|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999888 8999999999999999999999999999999999999998
No 33
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.79 E-value=1.2e-19 Score=139.86 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=70.1
Q ss_pred CCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020460 248 SRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSY 320 (326)
Q Consensus 248 ~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~~ 320 (326)
++||||+|||+||++++|.+++.++|++. .+|+++||++|++||++||++|+++|++++++|..+|++|+.+-
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 74 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 47999999999999999999999999999 99999999999999999999999999999999999999998653
No 34
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=147.87 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=69.9
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020460 244 LRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 244 ~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
.+|+++||||+|||+||++++|.+++.++|++. .+|+++||++|+.|+++||++|+++|++++++|+++|++|+-+
T Consensus 24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 24 SKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 567889999999999999999999999999999 9999999999999999999999999999999999999999864
No 35
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.79 E-value=1.2e-19 Score=139.14 Aligned_cols=72 Identities=13% Similarity=0.237 Sum_probs=69.6
Q ss_pred CCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020460 248 SRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 248 ~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
++||||+|||+||++++|.+++.++|++. .+|+++||++|++|+++||++|+++|++++++|..+|++|+-.
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~ 73 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYR 73 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 58999999999999999999999999999 9999999999999999999999999999999999999999854
No 36
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.79 E-value=1.1e-19 Score=140.90 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=68.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020460 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSY 320 (326)
Q Consensus 246 dp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~~ 320 (326)
.+++||||+|||+||++++|..|+.++|++. .+|+++||++|++|+++||++|+++|++++++|..+|++|+-+-
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 78 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRP 78 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCC
Confidence 3568999999999999999999999999999 99999999999999999999999999999999999999998643
No 37
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.78 E-value=2.3e-19 Score=140.27 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=69.4
Q ss_pred CCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020460 248 SRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 248 ~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
++||||+||||||++++|.+++.++|++. .+|+++||++|++|+++||++|+++|++++++|..+|++|+.+
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 73 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSAR 73 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCC
Confidence 47999999999999999999999999999 9999999999999999999999999999999999999999843
No 38
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=6.2e-19 Score=154.52 Aligned_cols=78 Identities=31% Similarity=0.589 Sum_probs=75.1
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020460 242 LALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 242 kk~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
++.+||++||||+|||+||++++|.+|+.+||++. .+|+++||++|++|+++||++|+++|++++++|..+|++|+.+
T Consensus 94 k~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~k 172 (173)
T 2yrq_A 94 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 172 (173)
T ss_dssp CSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44579999999999999999999999999999999 9999999999999999999999999999999999999999976
No 39
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.77 E-value=1.8e-19 Score=139.20 Aligned_cols=73 Identities=18% Similarity=0.300 Sum_probs=67.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020460 247 PSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 247 p~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
.++||||+||||||++++|.+++.++|++. .+|+++||++|++|+++||++|.++|++++++|..++++|+-+
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~ 75 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYK 75 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeec
Confidence 468999999999999999999999999999 9999999999999999999999999999999999999999864
No 40
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.77 E-value=5.6e-19 Score=140.01 Aligned_cols=74 Identities=19% Similarity=0.372 Sum_probs=71.0
Q ss_pred CCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 020460 248 SRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSYDS 322 (326)
Q Consensus 248 ~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~~~~ 322 (326)
++||||+|||+||+++.|..++.++|+ . .+|+++||++|++|+++||++|+++|++||++|.+||.+|+.+...
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~ 77 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA 77 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 589999999999999999999999999 6 9999999999999999999999999999999999999999987654
No 41
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.75 E-value=3.5e-18 Score=137.91 Aligned_cols=76 Identities=18% Similarity=0.313 Sum_probs=68.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 020460 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSYDST 323 (326)
Q Consensus 246 dp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~~~~~ 323 (326)
...+||||+|||+||+++++. ..+++++. .||+++||++|++|+++||++|+++|+++|++|+++|++|++.+..+
T Consensus 5 ~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~ 81 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQ 81 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 456899999999999999975 44556677 89999999999999999999999999999999999999999987654
No 42
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.6e-18 Score=149.67 Aligned_cols=81 Identities=27% Similarity=0.459 Sum_probs=76.0
Q ss_pred cccccCCCCCCCCCCCChHHHHHHHHHHHhhccCCCC--c-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHH
Q 020460 239 RSRLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQ--E-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLE 315 (326)
Q Consensus 239 k~~kk~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~--~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~ 315 (326)
++++.++||++||||+|||+||++++|.+|+.+||+. . .||+++||++|+.|+++||++|+++|++++++|..+|.+
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKT 84 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556678999999999999999999999999999994 6 999999999999999999999999999999999999999
Q ss_pred HHhc
Q 020460 316 YRSS 319 (326)
Q Consensus 316 Yk~~ 319 (326)
|...
T Consensus 85 y~~~ 88 (173)
T 2yrq_A 85 YIPP 88 (173)
T ss_dssp CCCC
T ss_pred hhhh
Confidence 9753
No 43
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.72 E-value=1.8e-18 Score=156.95 Aligned_cols=77 Identities=29% Similarity=0.506 Sum_probs=72.7
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHhhccCCCCchHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020460 241 RLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSY 320 (326)
Q Consensus 241 ~kk~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~~ 320 (326)
++..+|+++||||+|||+||++++|.+++.++| .+|+++||++|++|+++||++|+++|++++++|+++|++|++++
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~~ 182 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 182 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445679999999999999999999999999888 69999999999999999999999999999999999999999975
No 44
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.8e-18 Score=159.35 Aligned_cols=77 Identities=29% Similarity=0.506 Sum_probs=72.8
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHhhccCCCCchHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020460 241 RLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSY 320 (326)
Q Consensus 241 ~kk~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~~ 320 (326)
++..+|+++||||+|||+||++++|.+++.++| .+|+++||++|++|+++||++|+++|++++++|+++|++|++++
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k~ 214 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 214 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH---HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445689999999999999999999999999888 69999999999999999999999999999999999999999975
No 45
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=152.71 Aligned_cols=80 Identities=21% Similarity=0.340 Sum_probs=75.2
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020460 242 LALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSY 320 (326)
Q Consensus 242 kk~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~~ 320 (326)
...+||++||||+|||+||++++|.+|+.+||++. .||+++||++|+.|+++||.+|+++|++++++|+.+|.+|++.+
T Consensus 34 ~s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 113 (238)
T 3tmm_A 34 SSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 113 (238)
T ss_dssp -CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34678999999999999999999999999999999 99999999999999999999999999999999999999998655
Q ss_pred C
Q 020460 321 D 321 (326)
Q Consensus 321 ~ 321 (326)
.
T Consensus 114 ~ 114 (238)
T 3tmm_A 114 T 114 (238)
T ss_dssp C
T ss_pred C
Confidence 3
No 46
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-17 Score=130.57 Aligned_cols=69 Identities=23% Similarity=0.342 Sum_probs=64.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHH---HHHhhcCCHHHhHHHHHHHHHHHHHHHHHHH
Q 020460 244 LRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKI---GVLWSNLTEAEKQVYQEKGLKDKERYKSEML 314 (326)
Q Consensus 244 ~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~i---ge~Wk~LseeeK~~Y~e~A~~dkerY~~em~ 314 (326)
..++++||||+|||+||++++|.+|+.+ ++. .||+++| |++|+.|+++||++|+++|+++|++|.+++.
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 4567899999999999999999999998 677 9999999 9999999999999999999999999998864
No 47
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=8.8e-17 Score=124.88 Aligned_cols=62 Identities=13% Similarity=0.249 Sum_probs=58.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhhccCCCCc--hHHHHHHHHHhhcCCHHHhHHHHHHHHHHH
Q 020460 245 RDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE--KAISKKIGVLWSNLTEAEKQVYQEKGLKDK 306 (326)
Q Consensus 245 kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~--~eisk~ige~Wk~LseeeK~~Y~e~A~~dk 306 (326)
.++++||||+|||+||++++|.+|+.+||++. .||+++||++|++|+++||++|+++|++|.
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999994 999999999999999999999999999884
No 48
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-17 Score=132.08 Aligned_cols=73 Identities=12% Similarity=0.216 Sum_probs=62.8
Q ss_pred cccccCCCCCCCCCCCChHHHHHHHHHHHhhccCCCCchHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHH
Q 020460 239 RSRLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSE 312 (326)
Q Consensus 239 k~~kk~kdp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~e 312 (326)
...++++||++||||+||||||++++|.+|+.+||++... ...|+++|++|+++||++|+++|+++|++|+.+
T Consensus 12 ~~~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~-~~eIse~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 12 STLKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTR-VKQIAKLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp CHHHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHH-HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccch-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3455677999999999999999999999999999987511 233339999999999999999999999999863
No 49
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=143.63 Aligned_cols=76 Identities=22% Similarity=0.380 Sum_probs=72.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020460 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSYD 321 (326)
Q Consensus 246 dp~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~~~~ 321 (326)
+|++||||+|||+||++++|.+++.+||++. .||+++||++|+.|+++||.+|+++|.+++++|+.+|.+|++.+.
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~t 82 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLT 82 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 3678999999999999999999999999999 999999999999999999999999999999999999999987553
No 50
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.54 E-value=6.1e-15 Score=127.15 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=69.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHhhcCCHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 020460 247 PSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRS 318 (326)
Q Consensus 247 p~~PKrP~SaY~lF~~e~r~~lk~e~p~~~-~eisk~ige~Wk~LseeeK~~Y~e~A~~dkerY~~em~~Yk~ 318 (326)
+++||||++||++|+.+.+.+|+.+||++. .||+++||++|+.|+++||.+|.++|++++++|..+|++|+.
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 74 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999999999999 999999999999999999999999999999999999999964
No 51
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=78.56 E-value=2.5 Score=30.55 Aligned_cols=41 Identities=17% Similarity=0.395 Sum_probs=29.9
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~~ 131 (326)
.|...|...|. +.|..||..|+|..- ...+++.-|..+|.+
T Consensus 20 ~L~~~v~~~G~-------~~W~~Ia~~~~~~~R---t~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 20 NLRSGVRKYGE-------GNWSKILLHYKFNNR---TSVMLKDRWRTMKKL 60 (69)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHSCCSSC---CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCC-------CcHHHHHHHcCcCCC---CHHHHHHHHHHHcCC
Confidence 46677777772 389999999986322 234889999988865
No 52
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=73.99 E-value=2.3 Score=28.83 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=27.4
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~~ 131 (326)
.|...|...| .+.|..||..|+ .. ...+.+..|..+|.|
T Consensus 13 ~L~~~v~~~G-------~~~W~~Ia~~~~--~R---t~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 13 RLIKLVQKYG-------PKRWSVIAKHLK--GR---IGKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHC-------TTCHHHHHTTST--TC---CHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHC-------cChHHHHHHHcC--CC---CHHHHHHHHHHHcCc
Confidence 4566677766 247999999974 22 234789999998864
No 53
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.68 E-value=3.2 Score=30.01 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=27.7
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~~ 131 (326)
.|...|...| .+.|..||..|+- -...+.+..|..+|.+
T Consensus 19 ~L~~~v~~~G-------~~~W~~Ia~~l~~-----Rt~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 19 ILKAAVMKYG-------KNQWSRIASLLHR-----KSAKQCKARWYEWLDP 57 (70)
T ss_dssp HHHHHHHHTC-------SSCHHHHHHHSTT-----CCHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHC-------cCCHHHHHHHhcC-----CCHHHHHHHHHHHcCC
Confidence 4666777776 2589999999861 1233778888888864
No 54
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=72.35 E-value=3.5 Score=27.86 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=27.3
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~~ 131 (326)
.|...|...|- ..|..||..|. .. ...+.+..|.++|.|
T Consensus 13 ~L~~~v~~~G~-------~~W~~Ia~~~~--~R---t~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 13 KLKKLVEQNGT-------DDWKVIANYLP--NR---TDVQCQHRWQKVLNP 51 (52)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHTST--TC---CHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCC-------CCHHHHHHHcC--CC---CHHHHHHHHHHHcCc
Confidence 45666776662 47999999974 21 234789999998864
No 55
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=71.27 E-value=4.4 Score=28.38 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=26.2
Q ss_pred HHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhH
Q 020460 82 LFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 82 Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~ 130 (326)
|...|...|- +.|..||..|+- . ...+.+.+|.++|.
T Consensus 19 L~~~v~~~G~-------~~W~~Ia~~~~~--R---t~~qcr~r~~~~l~ 55 (60)
T 1x41_A 19 LLEAVMDCGF-------GNWQDVANQMCT--K---TKEECEKHYMKYFS 55 (60)
T ss_dssp HHHHHHHTCT-------TCHHHHHHHHTT--S---CHHHHHHHHHHHTT
T ss_pred HHHHHHHHCc-------CcHHHHHHHhCC--C---CHHHHHHHHHHHcc
Confidence 5566666661 489999999953 1 23378999998885
No 56
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=68.37 E-value=7 Score=26.52 Aligned_cols=39 Identities=18% Similarity=0.479 Sum_probs=27.7
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhh
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLL 129 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L 129 (326)
.|...|...| .+.|..|+..|++..- .+.+++.-|..+|
T Consensus 12 ~L~~~v~~~G-------~~~W~~Ia~~~~~~~R---t~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 12 NLRSGVRKYG-------EGNWSKILLHYKFNNR---TSVMLKDRWRTMK 50 (53)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHSCCSSC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-------cCCHHHHHHHcCCCCC---CHHHHHHHHHHHH
Confidence 4667777777 2489999999987422 2337788888776
No 57
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=68.36 E-value=4.7 Score=28.10 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=26.8
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~~ 131 (326)
.|...|...| .+.|..||..|. .. ...+.+..|..+|.+
T Consensus 18 ~L~~~v~~~G-------~~~W~~Ia~~~~--~R---t~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 18 QLRALVRQFG-------QQDWKFLASHFP--NR---TDQQCQYRWLRVLSG 56 (60)
T ss_dssp HHHHHHHHTC-------TTCHHHHHHHCS--SS---CHHHHHHHHHHTSCS
T ss_pred HHHHHHHHhC-------CCCHHHHHHHcc--CC---CHHHHHHHHHHHcCC
Confidence 3556666666 248999999974 21 233789999988854
No 58
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=58.92 E-value=11 Score=26.24 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=27.4
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhH
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~ 130 (326)
.|...|...| .+.|..||..|+...+ ..+.+..|.+++.
T Consensus 19 ~L~~~v~~~G-------~~~W~~IA~~~~~~Rt----~~qcr~r~~~~~~ 57 (58)
T 2elk_A 19 LLIDACETLG-------LGNWADIADYVGNART----KEECRDHYLKTYI 57 (58)
T ss_dssp HHHHHHHHTT-------TTCHHHHHHHHCSSCC----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-------cCCHHHHHHHHCCCCC----HHHHHHHHHHHcc
Confidence 4667777776 2489999999985332 2367888887764
No 59
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=57.89 E-value=13 Score=26.46 Aligned_cols=40 Identities=10% Similarity=0.290 Sum_probs=27.9
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhH
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~ 130 (326)
.|...|...|- ..|..|+..+.|..- ...+++.-|..+|.
T Consensus 21 ~L~~~V~~~G~-------~~W~~Ia~~~~~~~R---t~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 21 WVKAGVQKYGE-------GNWAAISKNYPFVNR---TAVMIKDRWRTMKR 60 (64)
T ss_dssp HHHHHHHHHCT-------TCHHHHHHHSCCSSC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-------CchHHHHhhcCCCCC---CHHHHHHHHHHHhc
Confidence 46677777772 369999999887533 23378888877664
No 60
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.99 E-value=11 Score=27.42 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=29.4
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHHH
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHF 132 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~~f 132 (326)
.|...|...|--. +..+.|..||..|+- . ...+++.+|.+||.+-
T Consensus 18 ~L~~~v~~~g~~~--~~~~~W~~IA~~~~~--R---t~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 18 KLEQLLIKYPPEE--VESRRWQKIADELGN--R---TAKQVASQVQKYFIKL 62 (75)
T ss_dssp HHHHHHHHSCCCS--CHHHHHHHHHHHHSS--S---CHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCC--CCcccHHHHHHHhCC--C---CHHHHHHHHHHHHHHH
Confidence 3555666666211 122589999999963 1 2338899999998763
No 61
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.52 E-value=18 Score=25.55 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=26.2
Q ss_pred HHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHHHH
Q 020460 82 LFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFE 133 (326)
Q Consensus 82 Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~~fE 133 (326)
|...|...| ..|..||..+| . ...+.|..|..+|.+--
T Consensus 20 L~~~~~~~g--------~~W~~Ia~~~g--R----t~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 20 LLHLAKLMP--------TQWRTIAPIIG--R----TAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp HHHHHHHCT--------TCHHHHHHHHS--S----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--------CCHHHHhcccC--c----CHHHHHHHHHHHhChHh
Confidence 445555555 27999999555 1 13488999999998753
No 62
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=56.07 E-value=12 Score=29.18 Aligned_cols=53 Identities=26% Similarity=0.288 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeCCeecchhHHHHHHHhcCcchhh---cccccHHHHHHHhC
Q 020460 50 DLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKV---IRDRRWKEVVVVFN 109 (326)
Q Consensus 50 ~~F~~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~rGG~~~V---~~~~~W~eVa~~l~ 109 (326)
+.|+..|..++..||..+ +.-||..+|..|.+..=+=.+ ..-+.|..|.+.|.
T Consensus 9 q~fi~~lk~lLk~RgIkV-------kk~~L~~Ff~fi~~~cPWFp~eGtl~l~~W~kVG~~L~ 64 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV-------KYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQ 64 (94)
T ss_pred hHHHHHHHHHHHHcCeee-------cHHHHHHHHHHHHHhCCCcCcCCcccHHHHHHHHHHHH
Confidence 789999999999999998 667889999999874322222 23468999999876
No 63
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=54.61 E-value=35 Score=27.80 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=42.3
Q ss_pred hcHHHHHHHHHHHHHhcCCCCCCCeeCCeecchhHHHHHHHhcCcchhh---cccccHHHHHHHhC
Q 020460 47 QSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKV---IRDRRWKEVVVVFN 109 (326)
Q Consensus 47 ~~~~~F~~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~rGG~~~V---~~~~~W~eVa~~l~ 109 (326)
...+.|+..|+.++.+||..+ +.=||..+|..|.+.-=+=.+ ..-..|..|++.|.
T Consensus 5 s~~~~fi~~Lk~~LK~rGvkV-------~~k~L~~Ff~~i~~~cPWFp~eGtLd~~~W~kVG~~L~ 63 (124)
T 2lpy_A 5 SQHERYVEQLKQALKTRGVKV-------KYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQ 63 (124)
T ss_dssp HHHHHHHHHHHHHHHTTTCCC-------CHHHHHHHHHHHHHHCTTCTTTCCCCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCeee-------cHHHHHHHHHHHHHhCCCcCCCCccCHHHHHHHHHHHH
Confidence 345799999999999999998 556888999998754322111 33568999999883
No 64
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=49.33 E-value=21 Score=25.75 Aligned_cols=40 Identities=10% Similarity=0.188 Sum_probs=27.7
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHHHH
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFE 133 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~~fE 133 (326)
.|...|...|- .|..||..|.- .. ..++|.+|..||....
T Consensus 19 ~l~~~~~~~G~--------~W~~Ia~~~~~--Rt---~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 19 LFEQGLAKFGR--------RWTKISKLIGS--RT---VLQVKSYARQYFKNKV 58 (72)
T ss_dssp HHHHHHHHTCS--------CHHHHHHHHSS--SC---HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCc--------CHHHHHHHcCC--CC---HHHHHHHHHHHHHHHH
Confidence 34556666662 89999998742 22 2388999999987754
No 65
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=46.33 E-value=14 Score=32.43 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=33.5
Q ss_pred hHHH-HHHHHHhhcCCHHHhHHHHHHHHH-HHHHHHHHHHHHHh
Q 020460 277 KAIS-KKIGVLWSNLTEAEKQVYQEKGLK-DKERYKSEMLEYRS 318 (326)
Q Consensus 277 ~eis-k~ige~Wk~LseeeK~~Y~e~A~~-dkerY~~em~~Yk~ 318 (326)
..++ ..+|.-|+.+|+++|+.|.+.-+. ....|-..+.+|..
T Consensus 75 ~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~ 118 (211)
T 2qgu_A 75 KRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRN 118 (211)
T ss_dssp HHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4444 456899999999999999876655 66779899988874
No 66
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=45.97 E-value=18 Score=28.08 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=26.0
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhH
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~ 130 (326)
.|...|...|. ..|..||..|+- . ...+.+..|.++|.
T Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~--R---t~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 11 KLQQLVMRYGA-------KDWIRISQLMIT--R---NPRQCRERWNNYIN 48 (107)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHTTT--S---CHHHHHHHHHHHSS
T ss_pred HHHHHHHHHCC-------CCHHHHhhhcCC--C---CHHHHHHHHHHHHc
Confidence 46677777774 579999999852 1 12366777777664
No 67
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=45.45 E-value=17 Score=27.02 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=22.9
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHh
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~ 128 (326)
.|..+|...| +.|..||..++- . ...+.+.+|.++
T Consensus 28 ~Ll~~v~~~G--------~~W~~IA~~v~~-R----T~~qcr~r~~~~ 62 (79)
T 2yus_A 28 LLLEALEMYK--------DDWNKVSEHVGS-R----TQDECILHFLRL 62 (79)
T ss_dssp HHHHHHHHSS--------SCHHHHHHHHSS-C----CHHHHHHHHTTS
T ss_pred HHHHHHHHhC--------CCHHHHHHHcCC-C----CHHHHHHHHHHh
Confidence 3455666666 489999999973 1 123667777654
No 68
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=37.84 E-value=20 Score=27.43 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=25.7
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhH
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~ 130 (326)
.|...|...|. +.|..||..|. .- ...+.+..|.++|.
T Consensus 14 ~L~~~v~~~g~-------~~W~~Ia~~l~--~R---t~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 14 RVIKLVQKYGP-------KRWSVIAKHLK--GR---IGKQCRERWHNHLN 51 (105)
T ss_dssp HHHHHHHHHCT-------TCHHHHHTTST--TC---CHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCC-------CcHHHHhhhhc--CC---CHHHHHHHHHhccC
Confidence 46677777774 47999999883 11 12367777877764
No 69
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=34.66 E-value=55 Score=23.82 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=19.4
Q ss_pred ccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020460 99 RRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 99 ~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~~ 131 (326)
++|..||..||- ....++++|..++..
T Consensus 32 ~RW~~IA~~lgR------t~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 32 GRWEKIAHELGR------SVTDVTTKAKQLKDS 58 (72)
T ss_dssp THHHHHHHHHTS------CHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHhCC------CHHHHHHHHHHHHHh
Confidence 589999999962 123778888776543
No 70
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=33.47 E-value=49 Score=25.44 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=28.5
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHHHH
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFE 133 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~~fE 133 (326)
.|...|...| +.|..||..|. ..+ ...++..|..++..-.
T Consensus 63 ~L~~~~~~~G--------~~W~~Ia~~l~--gRt---~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 63 LLDQKYAEYG--------PKWNKISKFLK--NRS---DNNIRNRWMMIARHRA 102 (107)
T ss_dssp HHHHHHHHTC--------SCHHHHHHHHS--SSC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--------cCHHHHHHHCC--CCC---HHHHHHHHHHHHhhHH
Confidence 5667777777 37999999883 222 3378999988876643
No 71
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=31.88 E-value=39 Score=26.82 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=26.8
Q ss_pred hHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhH
Q 020460 80 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 80 ~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~ 130 (326)
-.|-..|...|. +.|..||..|.- - ...+.+..|..+|.
T Consensus 36 ~~L~~~v~~~g~-------~~W~~Ia~~l~~--R---t~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 36 QRVIEHVQKYGP-------KRWSDIAKHLKG--R---IGKQCRERWHNHLN 74 (128)
T ss_dssp HHHHHHHHHTCS-------CCHHHHHHHSSS--C---CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC-------CCHHHHHHHhcC--C---cHHHHHHHHHHhcc
Confidence 356677777774 479999999842 1 12367888887774
No 72
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=29.89 E-value=31 Score=20.29 Aligned_cols=8 Identities=38% Similarity=0.617 Sum_probs=4.4
Q ss_pred CCCCCCCC
Q 020460 246 DPSRPKSN 253 (326)
Q Consensus 246 dp~~PKrP 253 (326)
|..+||+-
T Consensus 17 dddppkkr 24 (28)
T 3ukx_C 17 DDDPPKKR 24 (28)
T ss_dssp SSSCCSCC
T ss_pred CCCchhhh
Confidence 34566654
No 73
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=29.01 E-value=60 Score=24.20 Aligned_cols=36 Identities=11% Similarity=-0.024 Sum_probs=26.7
Q ss_pred HHHHHhhccCCCCc---hHHHHHHHHHhhcCCHHHhHHH
Q 020460 263 EHYARLKPHYYGQE---KAISKKIGVLWSNLTEAEKQVY 298 (326)
Q Consensus 263 e~r~~lk~e~p~~~---~eisk~ige~Wk~LseeeK~~Y 298 (326)
.+|..++.-||+.. .+..+.|.+.|..|++.++..-
T Consensus 28 ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~ 66 (92)
T 2o37_A 28 GYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREI 66 (92)
T ss_dssp HHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHH
Confidence 44555667788874 7888999999999997765443
No 74
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=23.70 E-value=58 Score=23.79 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=19.2
Q ss_pred ccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhH
Q 020460 99 RRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 99 ~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~ 130 (326)
++|..||..|+- . ....++.+|..++.
T Consensus 42 ~rW~~IA~~vpG--R---T~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 42 DCWDKIARCVPS--K---SKEDCIARYKLLVS 68 (73)
T ss_dssp HHHHHHGGGCSS--S---CHHHHHHHHHHHHS
T ss_pred chHHHHHHHcCC--C---CHHHHHHHHHHHHH
Confidence 589999999952 1 12377888887664
No 75
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=23.06 E-value=49 Score=25.43 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=36.5
Q ss_pred HHHHhhccCCCCc---------hHHHHHHHHHhhcCCHHH-hHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020460 264 HYARLKPHYYGQE---------KAISKKIGVLWSNLTEAE-KQVYQEKGLKDKERYKSEMLEYRSSY 320 (326)
Q Consensus 264 ~r~~lk~e~p~~~---------~eisk~ige~Wk~Lseee-K~~Y~e~A~~dkerY~~em~~Yk~~~ 320 (326)
.|...+.-||+.. .+..+.|.+.|..|++.. |+.|........+.|..-+.-|+...
T Consensus 37 Yr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~~~~~~~~~~~~~~~~ 103 (109)
T 2qsa_A 37 YRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHPDQRFYNYYQYYRLRA 103 (109)
T ss_dssp HHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCchHHHHHHHHHHHHHh
Confidence 3444455566632 478899999999998555 55666655544456666666666654
No 76
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.80 E-value=81 Score=21.78 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=23.1
Q ss_pred hcHHHHHHHHHHHHHhcCCCCCCCeeCC
Q 020460 47 QSSDLFWATLEAFHKSFGDKFKVPTVGG 74 (326)
Q Consensus 47 ~~~~~F~~~L~~F~~~rG~~l~~P~i~g 74 (326)
-.|+..++.|+.|+.+.|+-+.-|.+.+
T Consensus 29 g~REElvdRLk~Y~~QtGi~lnkP~~~~ 56 (58)
T 2do5_A 29 GNREELVERLQSYTRQTGIVLNRPSGPS 56 (58)
T ss_dssp SCHHHHHHHHHHHHHHHCCCCCCTTCSC
T ss_pred ccHHHHHHHHHHHhhccceeecCCCCCC
Confidence 4589999999999999999887666543
No 77
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=21.51 E-value=61 Score=25.83 Aligned_cols=38 Identities=11% Similarity=0.285 Sum_probs=26.9
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~~ 131 (326)
.|...|...|+ .|..||..|. ... ..+++..|..+|.+
T Consensus 64 ~L~~~~~~~G~--------~W~~Ia~~l~--gRt---~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 64 TIFRNYLKLGS--------KWSVIAKLIP--GRT---DNAIKNRWNSSISK 101 (131)
T ss_dssp HHHHHHHHSCS--------CHHHHTTTST--TCC---HHHHHHHHHHTTGG
T ss_pred HHHHHHHHHCc--------CHHHHHHHcC--CCC---HHHHHHHHHHHHHH
Confidence 46677888884 7999998763 222 33788988888754
No 78
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=21.02 E-value=1.3e+02 Score=22.35 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=27.1
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhC--CCCCCCcHHHHHHHHHHHhhH
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFN--FPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~--~~~~~t~as~~Lk~~Y~k~L~ 130 (326)
.|-..|.+.|. ..|..|+.... |+.- ....||..|..+|.
T Consensus 10 ~L~~gv~k~G~-------g~W~~I~~~~~~~~~~R---T~~~lKdrWrnllk 51 (83)
T 2ckx_A 10 ALVEAVEHLGT-------GRWRDVKMRAFDNADHR---TYVDLKDKWKTLVH 51 (83)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHHCTTCTTS---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-------CCcHHHHHhhccccCCC---CHHHHHHHHHHHHH
Confidence 45566777773 48999999744 4432 23478988888774
No 79
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=20.81 E-value=98 Score=21.74 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=25.2
Q ss_pred HHHHHhhccCCCCc---hHHHHHHHHHhhcCCHHHhH
Q 020460 263 EHYARLKPHYYGQE---KAISKKIGVLWSNLTEAEKQ 296 (326)
Q Consensus 263 e~r~~lk~e~p~~~---~eisk~ige~Wk~LseeeK~ 296 (326)
..|...+.-||+.. .+..+.|.+.|..|++.++.
T Consensus 28 ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R 64 (73)
T 2och_A 28 AYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKR 64 (73)
T ss_dssp HHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHH
Confidence 44555666788875 57888999999999876654
No 80
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=26.02 E-value=21 Score=27.00 Aligned_cols=29 Identities=7% Similarity=0.264 Sum_probs=20.8
Q ss_pred cHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHHHH
Q 020460 100 RWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFE 133 (326)
Q Consensus 100 ~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~~fE 133 (326)
.|..||..|+- .+. .+++..|..+|..+.
T Consensus 37 ~W~~IA~~l~g--Rt~---~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 37 NWSAIARMVGS--KTV---SQCKNFYFNYKKRQN 65 (89)
Confidence 69999998752 222 277999998887653
No 81
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=20.18 E-value=76 Score=25.10 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=24.6
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhH
Q 020460 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~~~~~t~as~~Lk~~Y~k~L~ 130 (326)
.|-..|...|. .|..||..|.- . ...+.+..|.++|.
T Consensus 21 ~L~~~v~~~G~--------~W~~Ia~~~~~--R---t~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 21 MLKRAVAQHGS--------DWKMIAATFPN--R---NARQCRDRWKNYLA 57 (126)
T ss_dssp HHHHHHHHHTT--------CHHHHHHTCTT--C---CHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCC--------CHHHHHHHcCC--C---CHHHHHHHHhhhcc
Confidence 46666776663 59999998742 1 12367777877774
Done!