Query 020461
Match_columns 326
No_of_seqs 177 out of 1562
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 02:33:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0643 Translation initiation 100.0 5.4E-61 1.2E-65 362.6 26.6 324 1-326 1-325 (327)
2 KOG0271 Notchless-like WD40 re 100.0 4.5E-47 9.8E-52 300.5 25.3 286 5-316 110-479 (480)
3 KOG0286 G-protein beta subunit 100.0 2.2E-44 4.7E-49 275.9 29.2 284 4-316 49-343 (343)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.5E-45 5.3E-50 293.8 22.0 281 8-316 173-458 (459)
5 KOG0279 G protein beta subunit 100.0 3.8E-41 8.3E-46 256.6 26.3 246 4-318 57-313 (315)
6 KOG0278 Serine/threonine kinas 100.0 9.7E-40 2.1E-44 245.4 16.6 288 3-320 7-299 (334)
7 KOG0263 Transcription initiati 100.0 7.4E-39 1.6E-43 275.1 24.2 245 7-320 375-651 (707)
8 KOG0284 Polyadenylation factor 100.0 4.7E-39 1E-43 256.9 17.5 281 10-317 96-379 (464)
9 KOG0273 Beta-transducin family 100.0 8E-37 1.7E-41 248.3 29.8 277 11-318 236-523 (524)
10 KOG0318 WD40 repeat stress pro 100.0 2.1E-36 4.4E-41 249.0 32.3 289 5-319 185-561 (603)
11 KOG0315 G-protein beta subunit 100.0 2.4E-37 5.1E-42 232.4 23.4 235 23-320 11-247 (311)
12 KOG0272 U4/U6 small nuclear ri 100.0 6.5E-38 1.4E-42 251.3 18.2 235 3-251 210-449 (459)
13 KOG0279 G protein beta subunit 100.0 2E-36 4.4E-41 230.8 25.4 248 4-321 9-265 (315)
14 KOG0291 WD40-repeat-containing 100.0 9.1E-36 2E-40 254.7 31.0 301 4-320 139-510 (893)
15 KOG0285 Pleiotropic regulator 100.0 7.1E-37 1.5E-41 240.9 21.2 246 4-320 145-391 (460)
16 KOG0291 WD40-repeat-containing 100.0 9.5E-36 2.1E-40 254.6 27.5 271 5-325 345-619 (893)
17 KOG0293 WD40 repeat-containing 100.0 1.7E-36 3.7E-41 242.7 21.4 287 4-320 218-515 (519)
18 KOG0271 Notchless-like WD40 re 100.0 3.1E-36 6.8E-41 239.1 21.3 246 4-252 151-471 (480)
19 cd00200 WD40 WD40 domain, foun 100.0 2E-34 4.4E-39 238.8 33.1 284 4-316 3-289 (289)
20 KOG0263 Transcription initiati 100.0 5.3E-36 1.2E-40 257.6 21.3 247 4-307 445-704 (707)
21 KOG0296 Angio-associated migra 100.0 1.8E-34 3.9E-39 227.7 27.5 289 4-318 58-398 (399)
22 KOG0282 mRNA splicing factor [ 100.0 4.4E-36 9.6E-41 244.7 18.3 286 4-316 208-503 (503)
23 KOG0265 U5 snRNP-specific prot 100.0 2.4E-34 5.2E-39 221.6 26.4 285 4-316 41-336 (338)
24 KOG0645 WD40 repeat protein [G 100.0 1E-34 2.3E-39 220.7 23.9 254 4-318 55-311 (312)
25 KOG0295 WD40 repeat-containing 100.0 1.4E-34 3E-39 228.3 24.4 285 4-317 102-405 (406)
26 KOG0316 Conserved WD40 repeat- 100.0 1.7E-34 3.8E-39 215.4 22.7 251 3-323 10-262 (307)
27 KOG0315 G-protein beta subunit 100.0 6.9E-34 1.5E-38 213.8 25.5 248 5-321 35-291 (311)
28 KOG0266 WD40 repeat-containing 100.0 5E-33 1.1E-37 243.4 31.9 285 9-319 158-455 (456)
29 KOG0640 mRNA cleavage stimulat 100.0 7.3E-34 1.6E-38 220.2 22.3 292 4-318 106-426 (430)
30 KOG0286 G-protein beta subunit 100.0 5E-32 1.1E-36 208.2 26.0 253 46-319 49-304 (343)
31 KOG0319 WD40-repeat-containing 100.0 6.1E-33 1.3E-37 237.0 21.8 255 4-318 359-619 (775)
32 KOG0645 WD40 repeat protein [G 100.0 1.6E-31 3.5E-36 203.3 27.2 246 3-318 7-261 (312)
33 KOG0305 Anaphase promoting com 100.0 3.7E-32 8.1E-37 229.7 24.2 244 9-320 216-463 (484)
34 KOG0283 WD40 repeat-containing 100.0 3.7E-32 7.9E-37 235.8 23.5 241 8-320 265-578 (712)
35 KOG0318 WD40 repeat stress pro 100.0 7.2E-31 1.6E-35 216.5 29.8 289 4-321 53-353 (603)
36 KOG0281 Beta-TrCP (transducin 100.0 1.9E-33 4.1E-38 221.0 14.0 234 10-320 197-430 (499)
37 KOG0273 Beta-transducin family 100.0 5.7E-32 1.2E-36 220.1 22.2 287 4-320 173-484 (524)
38 KOG0319 WD40-repeat-containing 100.0 6.4E-32 1.4E-36 230.7 22.9 300 6-319 100-536 (775)
39 KOG0275 Conserved WD40 repeat- 100.0 2.4E-32 5.1E-37 213.2 15.6 283 6-316 209-507 (508)
40 KOG0277 Peroxisomal targeting 100.0 1.4E-31 3.1E-36 201.9 19.1 239 10-316 60-307 (311)
41 KOG0276 Vesicle coat complex C 100.0 2.3E-31 4.9E-36 223.6 22.1 248 4-318 7-257 (794)
42 KOG0292 Vesicle coat complex C 100.0 1.3E-31 2.9E-36 233.0 21.4 246 7-319 6-281 (1202)
43 PLN00181 protein SPA1-RELATED; 100.0 2.1E-29 4.4E-34 236.1 36.8 292 7-318 480-793 (793)
44 KOG0313 Microtubule binding pr 100.0 9.4E-31 2E-35 207.8 22.3 270 4-319 138-419 (423)
45 KOG0281 Beta-TrCP (transducin 100.0 2.9E-32 6.2E-37 214.4 13.4 239 4-320 231-479 (499)
46 KOG0285 Pleiotropic regulator 100.0 8.2E-31 1.8E-35 206.8 20.8 254 4-320 187-441 (460)
47 PTZ00421 coronin; Provisional 100.0 2.2E-29 4.7E-34 220.0 29.9 255 9-322 19-294 (493)
48 KOG0306 WD40-repeat-containing 100.0 1E-29 2.2E-34 217.8 26.3 294 4-322 367-668 (888)
49 KOG0295 WD40 repeat-containing 100.0 2.5E-30 5.3E-35 204.4 19.2 233 4-250 144-394 (406)
50 KOG0265 U5 snRNP-specific prot 100.0 3.5E-30 7.6E-35 198.7 19.0 209 47-323 42-251 (338)
51 KOG0313 Microtubule binding pr 100.0 4.5E-30 9.7E-35 203.9 20.1 250 9-321 104-379 (423)
52 KOG1407 WD40 repeat protein [F 100.0 8.2E-29 1.8E-33 187.7 25.7 286 4-319 14-312 (313)
53 PTZ00421 coronin; Provisional 100.0 4.4E-29 9.6E-34 218.0 28.0 197 3-254 68-281 (493)
54 KOG1446 Histone H3 (Lys4) meth 100.0 2.1E-28 4.5E-33 190.5 28.1 248 4-322 8-266 (311)
55 KOG0289 mRNA splicing factor [ 100.0 3.1E-29 6.7E-34 202.4 24.0 249 4-317 255-505 (506)
56 PTZ00420 coronin; Provisional 100.0 4.2E-28 9.2E-33 213.0 32.1 236 28-322 50-297 (568)
57 KOG0268 Sof1-like rRNA process 100.0 3.2E-30 6.9E-35 203.7 15.8 279 6-318 62-345 (433)
58 KOG0292 Vesicle coat complex C 100.0 3.1E-28 6.6E-33 212.3 28.8 306 6-318 47-397 (1202)
59 KOG0276 Vesicle coat complex C 100.0 4E-29 8.7E-34 210.2 22.0 239 8-314 53-295 (794)
60 KOG0973 Histone transcription 100.0 5.2E-29 1.1E-33 221.7 23.9 269 2-317 5-311 (942)
61 KOG0310 Conserved WD40 repeat- 100.0 2.2E-29 4.8E-34 206.0 19.8 239 9-318 25-268 (487)
62 KOG2096 WD40 repeat protein [G 100.0 8.3E-29 1.8E-33 192.8 21.5 292 4-322 80-406 (420)
63 KOG0266 WD40 repeat-containing 100.0 2.1E-28 4.5E-33 214.4 26.4 234 4-251 197-441 (456)
64 KOG0274 Cdc4 and related F-box 100.0 3.9E-28 8.5E-33 212.5 26.9 276 9-322 207-486 (537)
65 KOG0306 WD40-repeat-containing 100.0 8.7E-28 1.9E-32 206.0 27.0 299 3-318 100-580 (888)
66 KOG0772 Uncharacterized conser 100.0 6.9E-29 1.5E-33 204.5 19.2 257 4-315 161-484 (641)
67 KOG0294 WD40 repeat-containing 100.0 1E-27 2.3E-32 186.3 22.2 242 5-320 38-283 (362)
68 KOG0284 Polyadenylation factor 100.0 4.4E-29 9.6E-34 200.0 14.9 237 4-256 132-373 (464)
69 KOG0300 WD40 repeat-containing 100.0 4.9E-28 1.1E-32 188.6 19.7 287 4-318 142-476 (481)
70 PTZ00420 coronin; Provisional 100.0 8.5E-27 1.8E-31 204.8 29.0 230 4-301 68-319 (568)
71 KOG0973 Histone transcription 100.0 1.3E-27 2.8E-32 212.8 23.5 256 5-325 64-362 (942)
72 KOG0288 WD40 repeat protein Ti 100.0 4.2E-28 9.1E-33 194.7 17.4 242 4-316 213-459 (459)
73 KOG0277 Peroxisomal targeting 100.0 2.9E-27 6.4E-32 178.7 20.9 240 14-319 12-266 (311)
74 KOG1273 WD40 repeat protein [G 100.0 3.2E-27 6.9E-32 183.8 21.3 279 13-318 26-322 (405)
75 KOG0647 mRNA export protein (c 100.0 3.5E-27 7.6E-32 182.4 21.3 248 8-319 25-282 (347)
76 cd00200 WD40 WD40 domain, foun 100.0 5.3E-26 1.1E-30 188.3 30.1 247 45-319 2-250 (289)
77 KOG0641 WD40 repeat protein [G 100.0 3.3E-25 7.1E-30 165.2 30.1 289 10-319 32-350 (350)
78 KOG0288 WD40 repeat protein Ti 100.0 3.8E-28 8.2E-33 195.0 15.2 251 5-323 170-422 (459)
79 KOG0299 U3 snoRNP-associated p 100.0 1.2E-26 2.5E-31 188.9 23.1 257 3-322 135-414 (479)
80 KOG0316 Conserved WD40 repeat- 100.0 7.2E-27 1.6E-31 174.8 19.8 241 4-316 53-297 (307)
81 KOG1332 Vesicle coat complex C 100.0 4.5E-27 9.8E-32 176.7 18.1 255 4-320 5-288 (299)
82 PLN00181 protein SPA1-RELATED; 100.0 1.5E-25 3.2E-30 210.2 32.2 235 8-254 530-785 (793)
83 KOG1036 Mitotic spindle checkp 100.0 4.1E-26 8.9E-31 177.0 22.5 250 8-319 11-263 (323)
84 KOG0296 Angio-associated migra 100.0 2.8E-26 6.1E-31 181.6 21.7 239 3-252 99-388 (399)
85 KOG0264 Nucleosome remodeling 100.0 2.5E-26 5.4E-31 186.7 21.0 267 7-321 121-407 (422)
86 KOG0293 WD40 repeat-containing 100.0 2.2E-26 4.9E-31 185.0 19.7 236 4-256 263-506 (519)
87 KOG1539 WD repeat protein [Gen 100.0 3.3E-25 7.2E-30 192.3 28.2 304 5-322 197-610 (910)
88 KOG2445 Nuclear pore complex c 100.0 9E-26 2E-30 175.1 22.2 277 4-316 7-316 (361)
89 KOG4283 Transcription-coupled 99.9 1.9E-25 4.1E-30 172.5 23.0 292 4-317 37-364 (397)
90 KOG0278 Serine/threonine kinas 99.9 8.7E-27 1.9E-31 175.8 15.2 202 8-224 98-300 (334)
91 KOG1407 WD40 repeat protein [F 99.9 1.1E-25 2.5E-30 170.8 21.2 233 5-252 59-292 (313)
92 KOG0310 Conserved WD40 repeat- 99.9 7.9E-26 1.7E-30 185.3 21.9 234 9-314 67-305 (487)
93 KOG0308 Conserved WD40 repeat- 99.9 8E-27 1.7E-31 197.2 15.5 257 6-321 69-330 (735)
94 KOG0274 Cdc4 and related F-box 99.9 2.7E-25 6E-30 194.7 25.5 215 6-241 245-463 (537)
95 KOG0283 WD40 repeat-containing 99.9 2.2E-26 4.7E-31 200.1 18.3 264 46-320 260-534 (712)
96 KOG0772 Uncharacterized conser 99.9 1.2E-26 2.7E-31 191.3 15.7 222 46-319 161-395 (641)
97 KOG0269 WD40 repeat-containing 99.9 1.3E-26 2.8E-31 199.5 15.9 243 14-321 91-343 (839)
98 KOG0646 WD40 repeat protein [G 99.9 4E-25 8.6E-30 180.3 20.8 220 11-319 82-308 (476)
99 KOG0299 U3 snoRNP-associated p 99.9 3.5E-25 7.6E-30 180.3 20.4 235 7-254 199-447 (479)
100 KOG0282 mRNA splicing factor [ 99.9 3.7E-26 8.1E-31 187.0 14.2 241 4-255 252-497 (503)
101 KOG2055 WD40 repeat protein [G 99.9 1.3E-24 2.8E-29 177.1 23.0 286 10-318 213-512 (514)
102 KOG1446 Histone H3 (Lys4) meth 99.9 1.2E-23 2.5E-28 164.1 27.2 245 8-322 54-307 (311)
103 KOG0308 Conserved WD40 repeat- 99.9 2.2E-25 4.7E-30 188.6 18.1 241 15-319 29-286 (735)
104 KOG1274 WD40 repeat protein [G 99.9 4.3E-24 9.2E-29 187.3 25.0 243 7-318 10-262 (933)
105 KOG1408 WD40 repeat protein [F 99.9 7.9E-25 1.7E-29 187.3 18.5 245 10-320 459-715 (1080)
106 KOG0267 Microtubule severing p 99.9 7E-26 1.5E-30 193.7 11.0 237 6-311 24-261 (825)
107 KOG0650 WD40 repeat nucleolar 99.9 2.2E-23 4.8E-28 175.1 25.2 293 4-315 394-732 (733)
108 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.9E-22 8.4E-27 167.1 32.1 269 23-321 2-282 (300)
109 KOG0267 Microtubule severing p 99.9 1.1E-25 2.3E-30 192.6 9.7 190 5-249 65-255 (825)
110 KOG0289 mRNA splicing factor [ 99.9 2.5E-23 5.5E-28 168.5 22.1 237 11-314 220-458 (506)
111 KOG0275 Conserved WD40 repeat- 99.9 2.3E-24 5E-29 168.7 15.6 247 50-322 211-471 (508)
112 KOG4328 WD40 protein [Function 99.9 2.6E-23 5.7E-28 169.4 22.1 290 4-317 180-494 (498)
113 KOG0647 mRNA export protein (c 99.9 4.1E-23 9E-28 160.0 22.0 233 3-306 65-311 (347)
114 KOG0301 Phospholipase A2-activ 99.9 2E-23 4.4E-28 178.0 22.0 237 4-320 51-290 (745)
115 KOG2048 WD40 repeat protein [G 99.9 3E-22 6.6E-27 170.5 28.7 286 10-318 25-319 (691)
116 KOG0321 WD40 repeat-containing 99.9 3.4E-23 7.3E-28 175.1 19.7 276 6-320 96-393 (720)
117 KOG0639 Transducin-like enhanc 99.9 9.4E-24 2E-28 174.0 15.8 242 8-318 417-663 (705)
118 KOG0294 WD40 repeat-containing 99.9 7.7E-23 1.7E-27 159.4 19.9 201 5-223 78-283 (362)
119 KOG0305 Anaphase promoting com 99.9 1.9E-22 4.1E-27 171.1 23.4 235 15-319 182-420 (484)
120 KOG0264 Nucleosome remodeling 99.9 3.7E-23 8E-28 168.4 17.8 200 4-255 171-396 (422)
121 KOG0301 Phospholipase A2-activ 99.9 9.4E-23 2E-27 173.9 20.7 239 4-320 8-251 (745)
122 KOG2096 WD40 repeat protein [G 99.9 8.9E-23 1.9E-27 159.4 18.4 221 45-323 79-313 (420)
123 KOG0302 Ribosome Assembly prot 99.9 5.3E-23 1.1E-27 163.9 17.2 211 6-318 147-378 (440)
124 KOG2106 Uncharacterized conser 99.9 5E-21 1.1E-25 158.1 28.3 286 8-325 152-484 (626)
125 KOG1063 RNA polymerase II elon 99.9 3.9E-22 8.5E-27 170.2 22.5 300 4-320 185-604 (764)
126 KOG0642 Cell-cycle nuclear pro 99.9 4.2E-23 9.2E-28 172.3 15.9 259 5-321 289-564 (577)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.1E-20 4.6E-25 156.6 32.0 266 6-298 27-300 (300)
128 KOG2106 Uncharacterized conser 99.9 7.3E-21 1.6E-25 157.1 27.5 269 11-315 247-518 (626)
129 KOG1408 WD40 repeat protein [F 99.9 5.7E-22 1.2E-26 170.0 21.1 304 5-322 73-538 (1080)
130 KOG1063 RNA polymerase II elon 99.9 2.9E-21 6.2E-26 165.0 24.9 287 4-315 48-388 (764)
131 KOG0643 Translation initiation 99.9 3E-21 6.4E-26 147.4 21.6 206 47-321 5-223 (327)
132 KOG0640 mRNA cleavage stimulat 99.9 3.6E-22 7.8E-27 155.5 16.8 225 47-320 107-337 (430)
133 KOG1332 Vesicle coat complex C 99.9 4.5E-22 9.7E-27 150.0 16.7 211 3-255 49-279 (299)
134 KOG0268 Sof1-like rRNA process 99.9 9.3E-23 2E-27 161.7 13.3 242 45-319 59-303 (433)
135 KOG0641 WD40 repeat protein [G 99.9 3.3E-21 7.2E-26 143.9 20.6 194 7-250 86-337 (350)
136 KOG0646 WD40 repeat protein [G 99.9 4.3E-22 9.3E-27 162.7 16.6 191 5-248 118-335 (476)
137 KOG1036 Mitotic spindle checkp 99.9 4.5E-21 9.7E-26 149.2 21.4 233 4-308 48-294 (323)
138 KOG0322 G-protein beta subunit 99.9 7.4E-22 1.6E-26 150.4 16.0 289 1-317 4-322 (323)
139 KOG0639 Transducin-like enhanc 99.9 8.5E-22 1.8E-26 162.6 17.5 237 10-317 465-703 (705)
140 KOG1538 Uncharacterized conser 99.9 4.6E-21 9.9E-26 163.5 21.0 274 12-317 14-292 (1081)
141 KOG1188 WD40 repeat protein [G 99.9 3.8E-21 8.3E-26 151.5 18.8 282 23-318 41-346 (376)
142 KOG0302 Ribosome Assembly prot 99.9 1.6E-21 3.6E-26 155.4 16.9 205 2-256 202-432 (440)
143 KOG1009 Chromatin assembly com 99.9 3.8E-21 8.1E-26 154.8 18.5 275 10-323 13-377 (434)
144 KOG0650 WD40 repeat nucleolar 99.9 6.8E-21 1.5E-25 160.3 19.5 254 46-316 394-678 (733)
145 KOG0300 WD40 repeat-containing 99.9 2.4E-21 5.1E-26 151.6 15.3 211 43-319 139-387 (481)
146 KOG1274 WD40 repeat protein [G 99.9 5.7E-21 1.2E-25 168.0 19.2 196 5-248 91-286 (933)
147 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-20 2.3E-25 155.9 16.3 220 14-299 83-304 (673)
148 KOG4283 Transcription-coupled 99.9 2.7E-20 5.9E-25 144.2 17.2 229 49-319 40-277 (397)
149 KOG0269 WD40 repeat-containing 99.9 6.3E-21 1.4E-25 164.8 13.8 200 4-256 127-333 (839)
150 KOG0270 WD40 repeat-containing 99.9 7.9E-20 1.7E-24 148.7 19.3 229 22-318 192-449 (463)
151 KOG2445 Nuclear pore complex c 99.9 2E-19 4.4E-24 140.0 19.7 215 49-319 10-257 (361)
152 KOG1539 WD repeat protein [Gen 99.9 4.1E-18 8.9E-23 148.8 29.7 292 5-321 154-526 (910)
153 KOG0303 Actin-binding protein 99.8 9.5E-20 2.1E-24 146.3 17.4 214 47-321 76-297 (472)
154 KOG1034 Transcriptional repres 99.8 8.5E-20 1.9E-24 143.3 15.1 248 9-317 88-382 (385)
155 KOG0303 Actin-binding protein 99.8 2.7E-19 6E-24 143.7 17.6 197 4-256 75-287 (472)
156 KOG0270 WD40 repeat-containing 99.8 9.3E-20 2E-24 148.3 14.6 210 7-227 240-455 (463)
157 KOG2055 WD40 repeat protein [G 99.8 2.4E-18 5.1E-23 140.9 20.7 246 52-319 213-468 (514)
158 KOG0771 Prolactin regulatory e 99.8 4.9E-19 1.1E-23 143.5 16.1 200 14-319 148-355 (398)
159 KOG1007 WD repeat protein TSSC 99.8 2.5E-18 5.4E-23 133.0 19.1 266 4-319 57-362 (370)
160 KOG0321 WD40 repeat-containing 99.8 1.8E-18 3.9E-23 146.8 19.9 244 15-322 54-351 (720)
161 KOG4227 WD40 repeat protein [G 99.8 6.4E-18 1.4E-22 136.0 22.0 301 5-316 51-385 (609)
162 KOG0642 Cell-cycle nuclear pro 99.8 4.4E-19 9.6E-24 148.5 15.2 211 4-229 338-569 (577)
163 KOG1034 Transcriptional repres 99.8 9.7E-19 2.1E-23 137.5 16.0 167 4-223 32-213 (385)
164 KOG0644 Uncharacterized conser 99.8 9.1E-20 2E-24 159.0 10.9 248 5-321 185-471 (1113)
165 COG2319 FOG: WD40 repeat [Gene 99.8 7.1E-16 1.5E-20 134.8 35.3 289 4-319 149-443 (466)
166 KOG0649 WD40 repeat protein [G 99.8 9.6E-18 2.1E-22 126.8 19.6 242 13-317 13-273 (325)
167 KOG2048 WD40 repeat protein [G 99.8 8.8E-17 1.9E-21 137.6 27.5 306 4-325 62-417 (691)
168 KOG0307 Vesicle coat complex C 99.8 3.9E-19 8.4E-24 160.1 13.7 243 14-320 68-329 (1049)
169 KOG4378 Nuclear protein COP1 [ 99.8 1.8E-18 4E-23 142.9 16.3 238 12-320 36-282 (673)
170 COG2319 FOG: WD40 repeat [Gene 99.8 1.7E-15 3.7E-20 132.5 34.8 290 5-321 60-362 (466)
171 KOG2919 Guanine nucleotide-bin 99.8 7.2E-17 1.6E-21 126.9 20.9 247 13-319 52-328 (406)
172 KOG0290 Conserved WD40 repeat- 99.8 3.1E-17 6.8E-22 127.1 18.2 254 12-321 46-321 (364)
173 KOG2919 Guanine nucleotide-bin 99.8 1.4E-17 3.1E-22 130.8 16.6 222 20-253 121-361 (406)
174 KOG0307 Vesicle coat complex C 99.8 5.6E-18 1.2E-22 152.7 13.8 248 14-320 10-286 (1049)
175 PRK11028 6-phosphogluconolacto 99.8 4.3E-15 9.3E-20 126.2 30.6 278 25-320 5-306 (330)
176 KOG1524 WD40 repeat-containing 99.8 1.7E-17 3.8E-22 138.5 14.9 208 22-258 75-282 (737)
177 KOG1963 WD40 repeat protein [G 99.8 1.1E-15 2.4E-20 134.6 25.9 311 3-323 9-380 (792)
178 KOG1310 WD40 repeat protein [G 99.7 4.9E-17 1.1E-21 136.2 15.2 176 4-221 44-231 (758)
179 KOG1523 Actin-related protein 99.7 4.6E-16 1E-20 122.2 19.2 223 6-315 6-233 (361)
180 KOG1009 Chromatin assembly com 99.7 6.5E-17 1.4E-21 130.6 13.6 158 52-252 13-185 (434)
181 KOG1517 Guanine nucleotide bin 99.7 1.5E-15 3.2E-20 136.3 23.2 290 11-321 1065-1384(1387)
182 KOG1963 WD40 repeat protein [G 99.7 5.1E-15 1.1E-19 130.5 26.1 303 8-319 203-539 (792)
183 KOG4328 WD40 protein [Function 99.7 4.4E-16 9.5E-21 127.7 17.0 217 43-317 177-398 (498)
184 KOG2110 Uncharacterized conser 99.7 1.8E-14 3.9E-19 115.4 24.6 240 10-321 5-251 (391)
185 PRK01742 tolB translocation pr 99.7 2E-15 4.3E-20 132.2 21.2 222 3-299 196-426 (429)
186 KOG2111 Uncharacterized conser 99.7 2.3E-14 4.9E-19 112.7 23.5 242 13-324 8-262 (346)
187 KOG1587 Cytoplasmic dynein int 99.7 1.5E-14 3.2E-19 126.7 24.0 266 3-321 235-519 (555)
188 KOG1007 WD repeat protein TSSC 99.7 1.9E-15 4.1E-20 117.2 15.9 158 145-317 122-288 (370)
189 KOG1240 Protein kinase contain 99.7 1.1E-14 2.4E-19 132.6 23.0 269 6-318 1044-1334(1431)
190 KOG1273 WD40 repeat protein [G 99.7 4.7E-15 1E-19 116.4 16.7 167 149-318 26-226 (405)
191 KOG2139 WD40 repeat protein [G 99.7 2.8E-14 6.1E-19 114.1 21.3 251 11-308 99-365 (445)
192 PRK01742 tolB translocation pr 99.7 1.1E-14 2.4E-19 127.6 20.1 210 31-317 183-400 (429)
193 KOG1445 Tumor-specific antigen 99.7 3.2E-15 6.9E-20 127.6 15.6 187 18-252 587-784 (1012)
194 KOG1445 Tumor-specific antigen 99.7 2.4E-15 5.3E-20 128.3 14.0 190 11-254 628-835 (1012)
195 KOG1272 WD40-repeat-containing 99.6 1.7E-15 3.8E-20 124.5 11.8 215 13-244 132-346 (545)
196 PRK11028 6-phosphogluconolacto 99.6 1.9E-12 4.1E-17 110.0 29.4 236 10-252 34-293 (330)
197 PF08662 eIF2A: Eukaryotic tra 99.6 7.9E-14 1.7E-18 108.1 19.0 155 14-229 9-186 (194)
198 KOG0649 WD40 repeat protein [G 99.6 1.7E-13 3.7E-18 104.1 19.9 158 12-221 116-274 (325)
199 KOG0644 Uncharacterized conser 99.6 1.1E-15 2.4E-20 133.9 8.6 213 46-318 184-426 (1113)
200 KOG1334 WD40 repeat protein [G 99.6 2E-14 4.4E-19 119.0 15.4 290 5-317 137-465 (559)
201 KOG1587 Cytoplasmic dynein int 99.6 1.3E-13 2.8E-18 121.0 20.8 230 31-321 221-475 (555)
202 KOG2111 Uncharacterized conser 99.6 2.6E-12 5.6E-17 101.3 25.7 245 32-320 75-324 (346)
203 KOG0290 Conserved WD40 repeat- 99.6 7.3E-14 1.6E-18 108.6 16.6 200 8-216 148-360 (364)
204 KOG2321 WD40 repeat protein [G 99.6 3.6E-13 7.8E-18 113.9 21.9 278 8-315 49-340 (703)
205 KOG2110 Uncharacterized conser 99.6 2.1E-12 4.6E-17 103.7 25.0 197 13-223 49-250 (391)
206 KOG0322 G-protein beta subunit 99.6 8.9E-15 1.9E-19 112.1 10.9 159 11-220 151-322 (323)
207 KOG1524 WD40 repeat-containing 99.6 2.2E-14 4.8E-19 120.2 14.0 224 50-314 12-282 (737)
208 PRK03629 tolB translocation pr 99.6 7.6E-13 1.6E-17 115.8 24.0 224 4-298 192-427 (429)
209 KOG1538 Uncharacterized conser 99.6 6.4E-14 1.4E-18 120.4 16.6 231 3-252 46-283 (1081)
210 PRK04922 tolB translocation pr 99.6 6.3E-13 1.4E-17 116.8 22.1 191 3-252 196-398 (433)
211 PF02239 Cytochrom_D1: Cytochr 99.6 9.3E-12 2E-16 106.0 27.7 281 14-316 40-345 (369)
212 KOG4227 WD40 repeat protein [G 99.6 3.7E-13 8E-18 108.9 17.6 161 45-252 49-214 (609)
213 PRK02889 tolB translocation pr 99.6 1E-12 2.2E-17 115.2 22.0 191 4-253 189-391 (427)
214 KOG2394 WD40 protein DMR-N9 [G 99.6 4.4E-13 9.6E-18 112.5 17.9 197 20-243 183-385 (636)
215 PRK05137 tolB translocation pr 99.6 4.3E-12 9.3E-17 111.7 25.2 217 32-319 182-411 (435)
216 KOG0771 Prolactin regulatory e 99.6 1.7E-12 3.7E-17 105.9 20.6 155 150-316 148-309 (398)
217 PRK03629 tolB translocation pr 99.5 9.7E-12 2.1E-16 108.9 25.2 215 33-318 180-406 (429)
218 PF08662 eIF2A: Eukaryotic tra 99.5 1.8E-12 3.8E-17 100.5 17.8 152 152-320 11-181 (194)
219 KOG1523 Actin-related protein 99.5 6.3E-13 1.4E-17 104.8 15.1 162 146-317 10-175 (361)
220 KOG1188 WD40 repeat protein [G 99.5 1E-12 2.2E-17 104.5 16.3 193 65-320 41-244 (376)
221 KOG2394 WD40 protein DMR-N9 [G 99.5 8.3E-14 1.8E-18 116.8 10.7 78 10-87 290-367 (636)
222 KOG1409 Uncharacterized conser 99.5 2.1E-12 4.5E-17 102.9 17.7 200 10-222 68-271 (404)
223 PRK04922 tolB translocation pr 99.5 8.2E-12 1.8E-16 109.8 22.6 217 32-319 184-410 (433)
224 PRK05137 tolB translocation pr 99.5 1.9E-11 4.2E-16 107.6 24.6 224 3-242 194-432 (435)
225 KOG1272 WD40-repeat-containing 99.5 8.1E-14 1.8E-18 114.9 8.6 194 56-321 133-326 (545)
226 KOG1310 WD40 repeat protein [G 99.5 3E-13 6.5E-18 113.9 11.3 161 45-256 43-224 (758)
227 KOG4497 Uncharacterized conser 99.5 4.5E-11 9.8E-16 95.0 22.8 284 11-312 49-426 (447)
228 KOG4497 Uncharacterized conser 99.5 2.6E-13 5.5E-18 107.5 9.9 218 15-314 13-236 (447)
229 KOG1334 WD40 repeat protein [G 99.5 6.8E-13 1.5E-17 110.1 12.4 260 46-317 136-423 (559)
230 KOG1517 Guanine nucleotide bin 99.5 5.5E-12 1.2E-16 113.9 18.5 227 12-250 1111-1369(1387)
231 PRK02889 tolB translocation pr 99.5 3.4E-11 7.3E-16 105.6 22.8 217 32-319 176-402 (427)
232 PF10282 Lactonase: Lactonase, 99.4 1.4E-09 3E-14 92.7 31.1 262 11-320 37-324 (345)
233 KOG3881 Uncharacterized conser 99.4 4E-11 8.6E-16 97.2 19.7 245 11-319 56-321 (412)
234 TIGR02800 propeller_TolB tol-p 99.4 4.7E-11 1E-15 104.9 22.3 192 3-253 182-385 (417)
235 KOG2315 Predicted translation 99.4 1.8E-10 3.9E-15 97.6 23.9 292 11-320 35-392 (566)
236 KOG0974 WD-repeat protein WDR6 99.4 1.9E-11 4E-16 110.3 17.8 190 17-318 94-288 (967)
237 KOG1064 RAVE (regulator of V-A 99.4 3.8E-12 8.3E-17 120.4 13.3 206 5-233 2203-2410(2439)
238 PRK00178 tolB translocation pr 99.4 2.6E-10 5.6E-15 100.5 23.7 191 3-252 191-393 (430)
239 KOG3881 Uncharacterized conser 99.4 8.2E-11 1.8E-15 95.4 18.0 209 22-244 115-343 (412)
240 COG2706 3-carboxymuconate cycl 99.4 4.4E-09 9.6E-14 85.0 27.4 266 6-321 35-324 (346)
241 PF02239 Cytochrom_D1: Cytochr 99.4 5.5E-09 1.2E-13 89.2 29.3 277 25-319 9-303 (369)
242 PRK04792 tolB translocation pr 99.4 3.4E-10 7.4E-15 99.7 22.2 192 4-254 211-414 (448)
243 KOG2321 WD40 repeat protein [G 99.4 2.8E-11 6.1E-16 102.7 14.2 192 15-250 138-331 (703)
244 TIGR02800 propeller_TolB tol-p 99.3 5.8E-10 1.2E-14 98.1 23.3 207 32-310 170-386 (417)
245 PRK01029 tolB translocation pr 99.3 8.4E-10 1.8E-14 96.5 23.6 191 8-251 182-389 (428)
246 KOG0974 WD-repeat protein WDR6 99.3 1.6E-11 3.6E-16 110.7 13.0 150 16-222 139-289 (967)
247 KOG0309 Conserved WD40 repeat- 99.3 2.2E-11 4.9E-16 106.2 11.6 254 13-323 70-344 (1081)
248 KOG0280 Uncharacterized conser 99.3 9.7E-10 2.1E-14 86.2 19.4 168 140-317 159-332 (339)
249 KOG1240 Protein kinase contain 99.3 4.4E-10 9.5E-15 103.4 20.2 224 37-320 1034-1275(1431)
250 PRK00178 tolB translocation pr 99.3 2.9E-09 6.4E-14 93.9 25.1 216 34-320 181-406 (430)
251 KOG2314 Translation initiation 99.3 3E-09 6.4E-14 90.4 23.0 285 11-318 250-573 (698)
252 KOG2139 WD40 repeat protein [G 99.3 1.4E-09 3.1E-14 87.6 19.7 98 11-108 196-295 (445)
253 KOG1354 Serine/threonine prote 99.3 8.7E-10 1.9E-14 88.3 18.1 274 11-320 26-361 (433)
254 TIGR02658 TTQ_MADH_Hv methylam 99.3 4E-08 8.6E-13 82.3 27.5 225 18-252 53-319 (352)
255 KOG4547 WD40 repeat-containing 99.2 6.7E-09 1.4E-13 88.8 22.3 96 143-243 99-195 (541)
256 KOG2041 WD40 repeat protein [G 99.2 1.9E-09 4.1E-14 94.3 19.3 290 11-321 15-340 (1189)
257 PRK04792 tolB translocation pr 99.2 1E-08 2.2E-13 90.4 24.2 217 33-320 199-425 (448)
258 COG5354 Uncharacterized protei 99.2 8.3E-09 1.8E-13 86.8 21.8 287 10-318 32-395 (561)
259 TIGR02658 TTQ_MADH_Hv methylam 99.2 3.2E-07 7E-12 77.0 30.9 259 32-320 27-332 (352)
260 KOG4547 WD40 repeat-containing 99.2 3.6E-09 7.8E-14 90.4 18.5 144 159-319 71-221 (541)
261 PRK01029 tolB translocation pr 99.1 1.4E-08 3.1E-13 88.8 21.0 180 11-243 231-425 (428)
262 KOG4190 Uncharacterized conser 99.1 2.8E-10 6.1E-15 96.6 7.7 178 3-230 728-915 (1034)
263 PLN02919 haloacid dehalogenase 99.1 4.9E-07 1.1E-11 87.4 30.2 269 13-321 570-891 (1057)
264 PF10282 Lactonase: Lactonase, 99.1 1.3E-06 2.8E-11 74.6 29.9 196 11-254 87-313 (345)
265 KOG3914 WD repeat protein WDR4 99.1 3.4E-09 7.3E-14 86.6 12.4 86 142-230 147-232 (390)
266 KOG1064 RAVE (regulator of V-A 99.1 1.7E-09 3.6E-14 103.2 12.0 192 20-230 2178-2375(2439)
267 PF00400 WD40: WD domain, G-be 99.0 7E-10 1.5E-14 61.9 5.1 38 43-80 2-39 (39)
268 PF04762 IKI3: IKI3 family; I 99.0 1.3E-06 2.9E-11 83.0 29.0 293 10-320 75-458 (928)
269 KOG4190 Uncharacterized conser 99.0 2.3E-09 5E-14 91.2 9.5 208 46-316 729-946 (1034)
270 PF15492 Nbas_N: Neuroblastoma 99.0 7.8E-07 1.7E-11 70.2 22.5 69 16-85 3-76 (282)
271 PF00400 WD40: WD domain, G-be 99.0 1.4E-09 3E-14 60.7 5.1 37 280-316 3-39 (39)
272 KOG4532 WD40-like repeat conta 98.9 3.8E-07 8.2E-12 71.1 18.2 226 22-309 84-323 (344)
273 KOG0882 Cyclophilin-related pe 98.9 2.2E-08 4.7E-13 83.2 10.4 214 9-229 8-239 (558)
274 KOG2314 Translation initiation 98.9 3.7E-06 8E-11 72.1 23.5 271 14-318 214-525 (698)
275 COG4946 Uncharacterized protei 98.9 3.8E-05 8.3E-10 64.9 30.1 117 189-319 357-478 (668)
276 KOG1354 Serine/threonine prote 98.8 1.9E-07 4.2E-12 75.1 14.4 231 52-321 25-304 (433)
277 KOG1409 Uncharacterized conser 98.8 2.3E-07 5E-12 74.7 14.8 211 42-318 14-227 (404)
278 COG5170 CDC55 Serine/threonine 98.8 7.8E-08 1.7E-12 76.4 11.2 254 10-320 26-311 (460)
279 KOG1832 HIV-1 Vpr-binding prot 98.8 9.3E-09 2E-13 92.2 6.3 186 4-250 1095-1284(1516)
280 COG2706 3-carboxymuconate cycl 98.8 3.9E-05 8.4E-10 62.7 25.9 235 31-320 15-276 (346)
281 COG4946 Uncharacterized protei 98.8 1E-05 2.2E-10 68.3 23.1 149 4-209 353-506 (668)
282 TIGR03300 assembly_YfgL outer 98.8 1E-05 2.2E-10 70.3 24.2 65 158-229 241-305 (377)
283 PLN02919 haloacid dehalogenase 98.7 1.6E-06 3.6E-11 83.8 20.3 180 13-225 685-892 (1057)
284 PRK04043 tolB translocation pr 98.7 1.6E-05 3.4E-10 69.5 24.5 180 12-252 189-387 (419)
285 TIGR03300 assembly_YfgL outer 98.7 2.7E-05 5.9E-10 67.6 26.1 265 21-319 64-339 (377)
286 KOG3914 WD repeat protein WDR4 98.7 2.5E-08 5.5E-13 81.6 6.5 88 3-91 144-232 (390)
287 KOG2315 Predicted translation 98.7 3.5E-06 7.5E-11 72.2 19.3 101 146-253 270-375 (566)
288 PF08450 SGL: SMP-30/Gluconola 98.7 7.7E-05 1.7E-09 60.6 28.0 224 15-250 4-243 (246)
289 KOG2695 WD40 repeat protein [G 98.7 3.7E-08 8E-13 79.2 6.9 125 11-185 253-385 (425)
290 KOG2041 WD40 repeat protein [G 98.7 5.7E-07 1.2E-11 79.3 13.3 224 52-316 14-245 (1189)
291 COG5354 Uncharacterized protei 98.7 1.2E-05 2.7E-10 68.3 20.6 145 144-310 272-421 (561)
292 KOG0280 Uncharacterized conser 98.7 1.4E-06 3.1E-11 68.8 13.9 155 13-222 124-285 (339)
293 PRK04043 tolB translocation pr 98.6 6.3E-05 1.4E-09 65.8 25.2 158 151-321 237-401 (419)
294 PF13360 PQQ_2: PQQ-like domai 98.6 5.3E-05 1.1E-09 61.2 23.1 216 31-320 2-232 (238)
295 PF15492 Nbas_N: Neuroblastoma 98.6 1.5E-05 3.2E-10 63.2 18.6 189 14-231 47-269 (282)
296 KOG2695 WD40 repeat protein [G 98.6 2.7E-07 5.9E-12 74.3 8.3 165 17-232 218-387 (425)
297 KOG4714 Nucleoporin [Nuclear s 98.6 1.1E-06 2.3E-11 68.3 10.5 152 157-323 100-259 (319)
298 KOG4714 Nucleoporin [Nuclear s 98.5 6.2E-06 1.3E-10 64.2 14.4 73 148-222 181-255 (319)
299 PF04762 IKI3: IKI3 family; I 98.5 0.0003 6.4E-09 67.4 28.0 273 12-321 23-336 (928)
300 KOG1645 RING-finger-containing 98.5 5.2E-06 1.1E-10 68.5 14.0 80 5-85 188-269 (463)
301 KOG1275 PAB-dependent poly(A) 98.4 3.7E-06 8.1E-11 76.2 11.4 146 19-219 184-340 (1118)
302 KOG0309 Conserved WD40 repeat- 98.4 1.1E-06 2.4E-11 77.7 7.7 82 4-85 108-191 (1081)
303 PF07433 DUF1513: Protein of u 98.4 0.00012 2.6E-09 59.7 18.8 183 15-211 55-276 (305)
304 KOG4532 WD40-like repeat conta 98.4 0.0001 2.2E-09 58.0 16.8 155 24-230 130-291 (344)
305 KOG2114 Vacuolar assembly/sort 98.4 0.00019 4.1E-09 65.2 20.8 192 17-253 30-235 (933)
306 PF11768 DUF3312: Protein of u 98.3 2.2E-05 4.7E-10 68.3 13.7 79 145-228 258-336 (545)
307 KOG1275 PAB-dependent poly(A) 98.3 1.4E-05 3E-10 72.6 12.9 145 157-316 186-340 (1118)
308 KOG2066 Vacuolar assembly/sort 98.3 0.00017 3.7E-09 64.9 18.6 185 12-221 41-233 (846)
309 COG5170 CDC55 Serine/threonine 98.3 7.7E-06 1.7E-10 65.4 9.2 82 147-229 222-318 (460)
310 KOG1912 WD40 repeat protein [G 98.2 0.00015 3.2E-09 65.2 16.9 211 4-222 49-305 (1062)
311 KOG0882 Cyclophilin-related pe 98.2 8.2E-06 1.8E-10 68.3 8.6 154 158-321 20-177 (558)
312 PF11768 DUF3312: Protein of u 98.1 1.9E-05 4.1E-10 68.7 9.4 76 8-85 257-332 (545)
313 PF13360 PQQ_2: PQQ-like domai 98.1 0.0026 5.6E-08 51.2 20.7 185 20-227 34-236 (238)
314 PRK11138 outer membrane biogen 98.1 0.0054 1.2E-07 53.6 23.7 189 22-228 120-319 (394)
315 PF08450 SGL: SMP-30/Gluconola 98.0 0.0053 1.2E-07 49.8 25.9 158 152-318 45-213 (246)
316 KOG1645 RING-finger-containing 98.0 0.00079 1.7E-08 56.0 15.8 155 43-253 184-351 (463)
317 smart00320 WD40 WD40 repeats. 98.0 1.8E-05 3.8E-10 43.0 4.7 38 43-80 3-40 (40)
318 PRK02888 nitrous-oxide reducta 98.0 0.0047 1E-07 55.6 21.3 113 201-319 286-405 (635)
319 KOG3617 WD40 and TPR repeat-co 98.0 0.00053 1.1E-08 62.5 15.3 110 13-176 18-131 (1416)
320 KOG1920 IkappaB kinase complex 97.9 0.0038 8.3E-08 59.3 21.1 235 53-321 69-325 (1265)
321 PF04053 Coatomer_WDAD: Coatom 97.9 0.0025 5.4E-08 55.9 18.9 140 158-324 117-268 (443)
322 PF07433 DUF1513: Protein of u 97.9 0.0086 1.9E-07 49.2 25.6 236 14-254 8-277 (305)
323 smart00320 WD40 WD40 repeats. 97.9 3.1E-05 6.8E-10 42.0 4.6 33 284-316 8-40 (40)
324 KOG2066 Vacuolar assembly/sort 97.8 0.0028 6.1E-08 57.5 17.6 96 5-102 53-169 (846)
325 PF04841 Vps16_N: Vps16, N-ter 97.8 0.021 4.5E-07 50.1 27.2 204 16-231 34-256 (410)
326 KOG1920 IkappaB kinase complex 97.8 0.029 6.2E-07 53.7 24.1 219 11-249 69-306 (1265)
327 KOG4640 Anaphase-promoting com 97.8 0.00016 3.4E-09 63.5 8.9 90 11-101 21-113 (665)
328 KOG3621 WD40 repeat-containing 97.8 0.00029 6.3E-09 62.6 10.5 127 146-323 33-160 (726)
329 KOG1008 Uncharacterized conser 97.8 3.6E-05 7.7E-10 67.5 4.9 201 12-264 58-275 (783)
330 KOG1912 WD40 repeat protein [G 97.8 0.002 4.4E-08 58.2 15.5 152 10-175 15-185 (1062)
331 KOG3621 WD40 repeat-containing 97.7 0.00049 1.1E-08 61.3 11.1 123 9-177 32-155 (726)
332 KOG4640 Anaphase-promoting com 97.7 0.00022 4.8E-09 62.6 8.4 92 147-242 21-115 (665)
333 KOG3617 WD40 and TPR repeat-co 97.6 0.00012 2.6E-09 66.4 6.2 107 197-318 21-131 (1416)
334 KOG1832 HIV-1 Vpr-binding prot 97.6 7.6E-05 1.6E-09 68.0 4.8 146 44-248 1093-1246(1516)
335 PRK11138 outer membrane biogen 97.6 0.04 8.7E-07 48.2 24.0 195 21-229 68-282 (394)
336 COG0823 TolB Periplasmic compo 97.6 0.013 2.8E-07 51.3 17.7 185 11-253 193-390 (425)
337 PF03178 CPSF_A: CPSF A subuni 97.4 0.038 8.3E-07 46.8 18.7 138 168-320 62-204 (321)
338 cd00216 PQQ_DH Dehydrogenases 97.4 0.097 2.1E-06 47.2 27.3 72 22-94 61-140 (488)
339 PF08553 VID27: VID27 cytoplas 97.4 0.011 2.4E-07 55.2 15.2 145 22-220 493-646 (794)
340 PRK02888 nitrous-oxide reducta 97.3 0.058 1.3E-06 48.9 18.9 147 60-224 200-354 (635)
341 KOG2114 Vacuolar assembly/sort 97.3 0.04 8.7E-07 50.8 18.0 145 160-318 79-243 (933)
342 PF08553 VID27: VID27 cytoplas 97.3 0.0064 1.4E-07 56.7 13.2 89 161-251 545-637 (794)
343 PF12894 Apc4_WD40: Anaphase-p 97.3 0.001 2.2E-08 38.1 5.1 37 7-44 8-44 (47)
344 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.027 5.8E-07 38.7 13.7 65 13-81 2-70 (111)
345 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0011 2.3E-08 38.0 4.8 30 288-317 11-40 (47)
346 PF06977 SdiA-regulated: SdiA- 97.2 0.078 1.7E-06 42.8 21.3 201 5-249 16-238 (248)
347 COG0823 TolB Periplasmic compo 97.1 0.19 4.1E-06 44.2 19.9 98 151-252 242-345 (425)
348 PF04053 Coatomer_WDAD: Coatom 97.0 0.037 7.9E-07 48.8 14.4 143 147-320 33-175 (443)
349 PF08596 Lgl_C: Lethal giant l 97.0 0.19 4.2E-06 43.7 18.6 153 54-221 3-173 (395)
350 KOG2395 Protein involved in va 96.9 0.027 5.8E-07 49.2 12.1 146 67-220 349-499 (644)
351 KOG1008 Uncharacterized conser 96.9 0.00032 7E-09 61.8 0.8 168 142-317 98-274 (783)
352 PF14583 Pectate_lyase22: Olig 96.8 0.27 5.9E-06 42.0 27.3 293 17-317 42-380 (386)
353 KOG2444 WD40 repeat protein [G 96.7 0.0032 7E-08 48.7 5.0 141 161-319 33-178 (238)
354 PF06433 Me-amine-dh_H: Methyl 96.7 0.3 6.6E-06 40.9 19.1 204 14-231 98-330 (342)
355 COG3490 Uncharacterized protei 96.7 0.26 5.7E-06 39.9 15.4 57 16-72 119-181 (366)
356 PF02897 Peptidase_S9_N: Proly 96.6 0.47 1E-05 41.8 25.7 96 13-110 126-243 (414)
357 PF08596 Lgl_C: Lethal giant l 96.6 0.46 1E-05 41.4 23.3 241 12-261 3-335 (395)
358 PRK13616 lipoprotein LpqB; Pro 96.4 0.63 1.4E-05 42.9 18.3 186 11-213 350-560 (591)
359 PF03178 CPSF_A: CPSF A subuni 96.3 0.59 1.3E-05 39.7 23.2 195 33-242 3-237 (321)
360 COG3386 Gluconolactonase [Carb 96.3 0.56 1.2E-05 39.3 22.1 226 17-252 31-275 (307)
361 KOG4649 PQQ (pyrrolo-quinoline 96.3 0.44 9.6E-06 38.1 21.9 70 22-92 63-133 (354)
362 PF00930 DPPIV_N: Dipeptidyl p 96.2 0.69 1.5E-05 39.8 24.4 71 10-81 42-130 (353)
363 KOG2079 Vacuolar assembly/sort 96.2 0.11 2.3E-06 49.5 12.1 73 145-219 129-201 (1206)
364 COG3391 Uncharacterized conser 96.1 0.83 1.8E-05 39.8 22.7 203 14-231 77-293 (381)
365 KOG2079 Vacuolar assembly/sort 96.0 0.026 5.7E-07 53.3 7.2 70 11-82 131-203 (1206)
366 PF14783 BBS2_Mid: Ciliary BBS 95.9 0.32 6.9E-06 33.5 12.5 55 159-220 16-70 (111)
367 PF05096 Glu_cyclase_2: Glutam 95.8 0.78 1.7E-05 37.2 20.8 185 11-253 45-251 (264)
368 KOG1897 Damage-specific DNA bi 95.8 1.8 3.9E-05 41.3 28.6 136 169-321 751-901 (1096)
369 PRK13616 lipoprotein LpqB; Pro 95.8 0.36 7.8E-06 44.5 13.8 156 148-320 351-527 (591)
370 PF05694 SBP56: 56kDa selenium 95.8 1.2 2.5E-05 38.8 16.3 153 169-321 158-345 (461)
371 PF04841 Vps16_N: Vps16, N-ter 95.6 1.1 2.5E-05 39.4 15.9 31 288-318 216-246 (410)
372 KOG4441 Proteins containing BT 95.6 1.9 4.2E-05 39.7 17.8 224 20-255 283-533 (571)
373 PF06433 Me-amine-dh_H: Methyl 95.4 1.4 3E-05 37.1 24.5 271 32-322 17-324 (342)
374 PF14655 RAB3GAP2_N: Rab3 GTPa 95.2 0.4 8.7E-06 41.8 11.3 86 7-92 304-408 (415)
375 PF10313 DUF2415: Uncharacteri 95.2 0.094 2E-06 29.1 4.8 35 289-323 1-38 (43)
376 PHA02713 hypothetical protein; 95.0 2.9 6.3E-05 38.6 16.9 63 157-222 463-534 (557)
377 PF02897 Peptidase_S9_N: Proly 94.7 0.51 1.1E-05 41.6 11.1 111 193-306 125-244 (414)
378 PF05096 Glu_cyclase_2: Glutam 94.7 1.9 4.2E-05 35.0 19.3 129 44-230 35-166 (264)
379 PF00930 DPPIV_N: Dipeptidyl p 94.6 2.6 5.7E-05 36.3 26.4 66 19-86 1-75 (353)
380 COG3391 Uncharacterized conser 94.4 3.2 7E-05 36.2 24.8 186 56-250 77-270 (381)
381 PF05694 SBP56: 56kDa selenium 94.0 3.9 8.5E-05 35.7 15.3 155 19-179 138-345 (461)
382 KOG2444 WD40 repeat protein [G 94.0 0.11 2.3E-06 40.6 4.5 63 21-83 113-178 (238)
383 PF12234 Rav1p_C: RAVE protein 93.8 1.1 2.3E-05 41.3 11.2 113 197-314 35-152 (631)
384 TIGR02276 beta_rpt_yvtn 40-res 93.4 0.58 1.3E-05 25.6 5.9 40 201-240 1-41 (42)
385 KOG1916 Nuclear protein, conta 93.3 0.14 3.1E-06 47.8 4.9 70 157-230 194-279 (1283)
386 COG3823 Glutamine cyclotransfe 93.3 3.1 6.8E-05 32.3 13.4 61 164-230 107-167 (262)
387 PF00780 CNH: CNH domain; Int 93.2 4.1 8.9E-05 33.5 21.8 63 20-85 5-67 (275)
388 KOG2395 Protein involved in va 93.0 0.7 1.5E-05 40.8 8.2 104 206-316 349-457 (644)
389 PF00780 CNH: CNH domain; Int 92.9 4.6 0.0001 33.2 21.3 207 11-232 36-266 (275)
390 PF11715 Nup160: Nucleoporin N 92.8 0.79 1.7E-05 42.2 9.1 74 157-230 157-257 (547)
391 KOG4460 Nuclear pore complex, 92.8 2.9 6.4E-05 37.2 11.6 95 192-322 104-202 (741)
392 PF07569 Hira: TUP1-like enhan 92.6 1.1 2.4E-05 35.6 8.5 68 154-222 18-96 (219)
393 PF10313 DUF2415: Uncharacteri 92.5 0.61 1.3E-05 25.9 4.8 30 148-177 2-34 (43)
394 KOG4499 Ca2+-binding protein R 92.5 4.2 9.2E-05 32.3 11.0 101 150-250 161-272 (310)
395 cd00216 PQQ_DH Dehydrogenases 92.4 8.3 0.00018 35.0 18.5 32 202-233 405-436 (488)
396 PF10168 Nup88: Nuclear pore c 92.4 4.2 9.1E-05 38.5 13.1 32 288-319 146-180 (717)
397 PF12234 Rav1p_C: RAVE protein 92.3 5.8 0.00013 36.8 13.5 115 58-175 35-155 (631)
398 COG3204 Uncharacterized protei 92.2 5.8 0.00012 32.7 19.2 198 8-248 83-299 (316)
399 PF11715 Nup160: Nucleoporin N 91.8 0.99 2.1E-05 41.5 8.4 72 20-91 156-257 (547)
400 COG3386 Gluconolactonase [Carb 91.8 7.1 0.00015 32.9 21.9 144 147-308 111-275 (307)
401 PF14655 RAB3GAP2_N: Rab3 GTPa 91.7 5.3 0.00012 35.1 12.1 90 142-231 303-408 (415)
402 TIGR03074 PQQ_membr_DH membran 91.5 14 0.0003 35.6 18.0 70 22-92 260-354 (764)
403 PF07569 Hira: TUP1-like enhan 91.4 2.6 5.7E-05 33.5 9.3 64 18-82 18-95 (219)
404 KOG1916 Nuclear protein, conta 90.3 0.45 9.7E-06 44.8 4.5 67 14-81 184-264 (1283)
405 TIGR02604 Piru_Ver_Nterm putat 90.3 11 0.00025 32.6 14.3 100 149-251 16-142 (367)
406 PF08728 CRT10: CRT10; InterP 90.3 17 0.00036 34.4 14.6 109 198-317 109-245 (717)
407 PF06977 SdiA-regulated: SdiA- 90.0 9.2 0.0002 31.1 22.2 204 47-307 16-240 (248)
408 PF10647 Gmad1: Lipoprotein Lp 89.7 10 0.00022 31.0 15.7 151 148-310 25-187 (253)
409 COG4590 ABC-type uncharacteriz 89.3 2 4.3E-05 37.5 7.3 172 140-322 214-390 (733)
410 PF03088 Str_synth: Strictosid 89.2 4.8 0.0001 26.7 7.6 44 207-250 31-74 (89)
411 KOG2377 Uncharacterized conser 89.1 4 8.6E-05 35.7 8.9 150 15-177 27-186 (657)
412 KOG4649 PQQ (pyrrolo-quinoline 88.7 12 0.00025 30.4 23.3 108 64-183 23-130 (354)
413 PF12657 TFIIIC_delta: Transcr 88.3 4.5 9.8E-05 30.7 8.2 31 289-319 86-122 (173)
414 COG3823 Glutamine cyclotransfe 88.3 11 0.00023 29.5 10.1 79 21-99 55-136 (262)
415 PHA02713 hypothetical protein; 88.2 22 0.00047 33.0 17.8 51 33-85 273-331 (557)
416 KOG3630 Nuclear pore complex, 87.8 14 0.00031 36.4 12.3 97 150-250 159-261 (1405)
417 PF10168 Nup88: Nuclear pore c 87.8 5.2 0.00011 38.0 9.7 72 12-84 86-181 (717)
418 KOG4441 Proteins containing BT 87.5 24 0.00052 32.8 19.9 144 157-314 380-537 (571)
419 COG5167 VID27 Protein involved 87.2 9.6 0.00021 34.0 10.1 60 158-221 573-632 (776)
420 PF07676 PD40: WD40-like Beta 86.6 2.3 4.9E-05 22.9 4.3 27 289-315 9-38 (39)
421 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.2 27 0.00059 32.0 20.2 69 160-230 122-198 (527)
422 PHA03098 kelch-like protein; P 85.9 28 0.00061 32.0 18.2 64 20-85 293-369 (534)
423 COG3204 Uncharacterized protei 85.0 21 0.00045 29.6 14.9 106 144-251 83-199 (316)
424 PRK13684 Ycf48-like protein; P 84.9 24 0.00052 30.2 16.9 158 10-219 172-329 (334)
425 KOG4460 Nuclear pore complex, 84.4 29 0.00062 31.4 11.6 35 148-182 167-204 (741)
426 TIGR03075 PQQ_enz_alc_DH PQQ-d 84.1 34 0.00075 31.4 21.5 62 168-233 441-502 (527)
427 PF15390 DUF4613: Domain of un 83.9 35 0.00075 31.3 17.4 150 11-178 20-188 (671)
428 PF07995 GSDH: Glucose / Sorbo 83.6 27 0.00058 29.8 16.8 59 158-216 271-330 (331)
429 KOG4499 Ca2+-binding protein R 83.2 6.6 0.00014 31.3 6.7 48 15-62 216-263 (310)
430 TIGR02276 beta_rpt_yvtn 40-res 82.9 5.6 0.00012 21.5 6.0 30 62-91 1-31 (42)
431 PF12657 TFIIIC_delta: Transcr 81.9 20 0.00044 27.2 9.2 30 147-176 86-121 (173)
432 PF08801 Nucleoporin_N: Nup133 81.8 37 0.0008 30.1 15.2 31 192-222 190-220 (422)
433 TIGR02604 Piru_Ver_Nterm putat 81.1 36 0.00078 29.5 14.7 100 147-249 72-200 (367)
434 PF01436 NHL: NHL repeat; Int 80.2 5.2 0.00011 19.7 3.6 25 13-37 4-28 (28)
435 PF10647 Gmad1: Lipoprotein Lp 78.4 35 0.00076 27.8 16.0 151 12-166 25-185 (253)
436 PF12341 DUF3639: Protein of u 77.3 7 0.00015 19.3 3.4 25 290-316 3-27 (27)
437 KOG1900 Nuclear pore complex, 76.8 41 0.00088 33.9 11.0 34 189-222 240-273 (1311)
438 PF01011 PQQ: PQQ enzyme repea 76.5 9.6 0.00021 20.3 4.4 28 66-93 2-29 (38)
439 smart00564 PQQ beta-propeller 76.2 8 0.00017 19.5 3.9 24 205-228 8-31 (33)
440 PF14781 BBS2_N: Ciliary BBSom 75.0 29 0.00062 25.1 8.6 73 15-89 3-88 (136)
441 PF14761 HPS3_N: Hermansky-Pud 74.9 13 0.00028 29.2 6.1 48 23-71 29-78 (215)
442 TIGR02608 delta_60_rpt delta-6 73.9 12 0.00027 22.2 4.5 30 291-320 3-37 (55)
443 PHA02790 Kelch-like protein; P 73.7 71 0.0015 29.0 16.9 60 21-82 271-339 (480)
444 PF08801 Nucleoporin_N: Nup133 73.7 65 0.0014 28.6 11.6 31 289-319 190-220 (422)
445 KOG1896 mRNA cleavage and poly 73.5 62 0.0013 32.5 11.2 32 290-321 1183-1216(1366)
446 PF08728 CRT10: CRT10; InterP 73.1 26 0.00057 33.1 8.6 79 3-81 156-245 (717)
447 COG5167 VID27 Protein involved 71.7 15 0.00032 32.9 6.3 60 21-81 572-631 (776)
448 KOG2280 Vacuolar assembly/sort 71.5 95 0.0021 29.5 15.4 39 192-230 217-255 (829)
449 PF03088 Str_synth: Strictosid 68.6 31 0.00067 22.9 6.0 44 162-209 31-74 (89)
450 KOG3630 Nuclear pore complex, 68.6 43 0.00092 33.4 9.0 107 148-254 102-220 (1405)
451 COG3490 Uncharacterized protei 68.5 68 0.0015 26.7 12.7 97 215-324 93-196 (366)
452 KOG2377 Uncharacterized conser 66.8 95 0.0021 27.7 10.7 97 190-302 65-167 (657)
453 PF14583 Pectate_lyase22: Olig 66.4 90 0.0019 27.3 22.1 100 148-252 239-370 (386)
454 KOG2247 WD40 repeat-containing 66.4 0.92 2E-05 39.8 -1.8 141 151-312 39-182 (615)
455 PF12768 Rax2: Cortical protei 65.3 25 0.00054 29.2 6.2 53 32-84 16-74 (281)
456 PF15390 DUF4613: Domain of un 65.2 1.2E+02 0.0025 28.2 13.7 102 192-306 57-173 (671)
457 PF14157 YmzC: YmzC-like prote 64.0 8.3 0.00018 23.3 2.4 25 300-324 29-53 (63)
458 KOG3611 Semaphorins [Signal tr 63.3 79 0.0017 30.4 9.7 77 2-78 399-489 (737)
459 PF14870 PSII_BNR: Photosynthe 63.2 92 0.002 26.3 25.8 109 191-309 144-253 (302)
460 PHA03098 kelch-like protein; P 61.0 1.4E+02 0.003 27.5 18.1 65 157-224 389-467 (534)
461 KOG1897 Damage-specific DNA bi 60.2 1.8E+02 0.004 28.8 24.4 120 193-321 489-616 (1096)
462 TIGR03606 non_repeat_PQQ dehyd 59.8 1.3E+02 0.0029 27.0 12.2 52 193-244 31-90 (454)
463 KOG3616 Selective LIM binding 58.5 31 0.00067 32.7 6.0 34 52-85 14-47 (1636)
464 PF07250 Glyoxal_oxid_N: Glyox 58.4 99 0.0021 25.1 9.5 56 198-253 73-138 (243)
465 COG5308 NUP170 Nuclear pore co 58.4 37 0.00079 32.9 6.5 107 210-325 99-220 (1263)
466 KOG1900 Nuclear pore complex, 57.3 1.9E+02 0.0042 29.6 11.2 38 286-323 240-277 (1311)
467 PF01731 Arylesterase: Arylest 57.2 24 0.00053 23.2 3.9 29 291-319 56-85 (86)
468 KOG1898 Splicing factor 3b, su 56.1 2.2E+02 0.0049 28.5 11.9 110 198-320 940-1050(1205)
469 PF13570 PQQ_3: PQQ-like domai 55.7 25 0.00053 18.9 3.3 20 203-222 21-40 (40)
470 PF14870 PSII_BNR: Photosynthe 55.7 1.3E+02 0.0027 25.5 29.2 268 9-312 15-298 (302)
471 KOG1983 Tomosyn and related SN 55.5 2.4E+02 0.0051 28.6 15.3 56 162-225 213-268 (993)
472 KOG3616 Selective LIM binding 54.9 35 0.00076 32.3 5.7 68 10-80 14-81 (1636)
473 PF11635 Med16: Mediator compl 53.3 2.3E+02 0.0049 27.7 20.5 86 191-313 259-345 (753)
474 PF14727 PHTB1_N: PTHB1 N-term 53.3 1.7E+02 0.0036 26.1 14.2 62 159-220 38-104 (418)
475 PF14727 PHTB1_N: PTHB1 N-term 52.9 1.7E+02 0.0037 26.1 17.0 146 64-220 37-203 (418)
476 PF14781 BBS2_N: Ciliary BBSom 52.7 87 0.0019 22.7 11.4 85 154-240 6-100 (136)
477 TIGR03074 PQQ_membr_DH membran 52.4 2.3E+02 0.0051 27.6 22.9 74 158-231 260-354 (764)
478 TIGR03118 PEPCTERM_chp_1 conse 51.6 1.5E+02 0.0032 25.1 20.5 209 14-230 26-288 (336)
479 TIGR03054 photo_alph_chp1 puta 51.3 68 0.0015 23.2 5.6 64 161-226 44-118 (135)
480 PHA02790 Kelch-like protein; P 50.0 2E+02 0.0044 26.1 14.1 63 20-84 317-386 (480)
481 PF13449 Phytase-like: Esteras 49.8 1.6E+02 0.0035 25.0 16.0 23 11-33 20-42 (326)
482 PF14761 HPS3_N: Hermansky-Pud 49.8 1.3E+02 0.0028 23.9 12.5 56 194-250 20-77 (215)
483 PF10584 Proteasome_A_N: Prote 49.3 6.2 0.00013 18.6 0.2 9 295-303 7-15 (23)
484 TIGR03606 non_repeat_PQQ dehyd 49.1 96 0.0021 27.9 7.5 58 6-63 25-89 (454)
485 KOG1520 Predicted alkaloid syn 46.9 1.5E+02 0.0031 25.8 7.8 43 208-250 194-236 (376)
486 PF10214 Rrn6: RNA polymerase 45.2 3.1E+02 0.0066 26.9 15.6 153 10-163 145-325 (765)
487 TIGR03547 muta_rot_YjhT mutatr 45.0 2E+02 0.0043 24.6 11.2 12 298-309 256-267 (346)
488 PF07250 Glyoxal_oxid_N: Glyox 44.5 1.7E+02 0.0037 23.8 12.0 33 151-185 174-206 (243)
489 PF11635 Med16: Mediator compl 44.4 1.1E+02 0.0025 29.6 7.8 70 147-216 260-345 (753)
490 COG5290 IkappaB kinase complex 42.5 3.4E+02 0.0073 26.5 14.1 96 150-247 250-351 (1243)
491 PF06739 SBBP: Beta-propeller 42.3 52 0.0011 17.6 3.1 21 12-32 14-34 (38)
492 PF07995 GSDH: Glucose / Sorbo 39.8 2.4E+02 0.0052 24.1 28.1 49 13-63 4-59 (331)
493 PF14269 Arylsulfotran_2: Aryl 38.6 1.6E+02 0.0034 24.8 7.0 68 13-80 146-218 (299)
494 KOG2247 WD40 repeat-containing 37.9 17 0.00036 32.4 1.1 62 16-78 123-184 (615)
495 KOG3611 Semaphorins [Signal tr 36.5 4.1E+02 0.0089 25.8 10.0 71 146-217 407-489 (737)
496 PF05787 DUF839: Bacterial pro 35.4 1.4E+02 0.003 27.5 6.6 17 53-69 502-518 (524)
497 COG4590 ABC-type uncharacteriz 34.3 3.5E+02 0.0076 24.4 10.3 63 158-225 328-390 (733)
498 PF12768 Rax2: Cortical protei 34.1 2.8E+02 0.006 23.2 12.4 82 167-252 15-109 (281)
499 PF08954 DUF1900: Domain of un 33.0 1.3E+02 0.0029 21.8 4.9 32 148-179 12-44 (136)
500 KOG2006 WD40 repeat protein [G 32.7 5.3E+02 0.011 25.9 11.9 70 15-84 153-227 (1023)
No 1
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-61 Score=362.63 Aligned_cols=324 Identities=60% Similarity=1.018 Sum_probs=304.3
Q ss_pred CCceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461 1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (326)
Q Consensus 1 ~~~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd 80 (326)
|||++|+||+-+++.+.|+.+|.+|++|+.|.++.+|-..+|+++.+++||+++|||++..-+.+.+++|+.|.++++||
T Consensus 1 mrpi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 1 MRPILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred CCccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCC-CCceEEEeccCccceeEEEEecCCc
Q 020461 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-GGESVLILKGPQGRINRAVWGPLNR 159 (326)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (326)
+++|+++..+....++..+.|..++.+++++.+..+.....+.+.++..+.... +.++++.+..+.+.++.+.|.|.++
T Consensus 81 v~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 81 VETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred cCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 999999999999999999999999999999998888888888888877655333 4456888889999999999999999
Q ss_pred EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEE
Q 020461 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239 (326)
Q Consensus 160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 239 (326)
.|++|..||.|..||.++++..... ...|...|+.+++++|..+++|+|.|.+-++||+++.++++++..+.|+|+.+
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s--~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa 238 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDS--DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA 238 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeec--hhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence 9999999999999999998665433 34688899999999999999999999999999999999999999999999999
Q ss_pred eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
++|..++++++||++...++.++.|.++++.++|+....++++.++||-++|++++|+|||+..++|++||.|||..|++
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeC
Q 020461 320 DYFNIKI 326 (326)
Q Consensus 320 ~~~~~~~ 326 (326)
+||+.++
T Consensus 319 ~YF~~~~ 325 (327)
T KOG0643|consen 319 NYFDFKF 325 (327)
T ss_pred chhheEe
Confidence 9999874
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-47 Score=300.46 Aligned_cols=286 Identities=26% Similarity=0.424 Sum_probs=232.5
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 84 (326)
.+.||..+|.|++|+|+|++||+|+.|.++|+||+.+.....++++|...|.|++|+||++.|++|+.||+|++||.++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cEEEEE--ecCCCcceeeeecC-----CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 85 AQLFTF--NFDSPARSVDFAVG-----DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 85 ~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
+++-.- .+...+.++.|.|. ...++.++ .++.+.+|++ ..+..+..+.||..+|+|+.|-.+
T Consensus 190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s-----kDg~vrIWd~------~~~~~~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS-----KDGSVRIWDT------KLGTCVRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred CcccccccCcccceeEEeecccccCCCccceeccc-----CCCCEEEEEc------cCceEEEEeccCccceEEEEEcCC
Confidence 875432 23344556665442 22222221 1233444543 235678889999999999999764
Q ss_pred CcEEEEeeCCCcEEEEECCCCcccccccc---------------------------------------------------
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDK--------------------------------------------------- 186 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--------------------------------------------------- 186 (326)
.+|++|+.|++|++|+...|.+.+++..
T Consensus 259 -gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 259 -GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred -ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 4788999999999998877655433221
Q ss_pred -------------------------ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEe
Q 020461 187 -------------------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM 240 (326)
Q Consensus 187 -------------------------~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~ 240 (326)
..+|+..|..+.||||+.++|++|.|..|++||.++|+.+.++. +-.++.-++|
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW 417 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence 13689999999999999999999999999999999999999997 5678999999
Q ss_pred CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
+.+...++. ++.|. .++.|+..+.+....+.||...|.++.|+|||..+++|+.|..++||.
T Consensus 418 saDsRLlVS-~SkDs-------------TLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 418 SADSRLLVS-GSKDS-------------TLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ccCccEEEE-cCCCc-------------eEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 998665554 44443 245666666666777899999999999999999999999999999996
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.2e-44 Score=275.95 Aligned_cols=284 Identities=20% Similarity=0.338 Sum_probs=245.6
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
++|+||...|.++.|++|+++|+++|.||.+.|||..+...++.++-....|..++|+|.+++++.||.|+...||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 78999999999999999999999999999999999999999999999899999999999999999999999999999985
Q ss_pred C--cE---EE-EE-ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 84 G--AQ---LF-TF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 84 ~--~~---~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
. +. +. .+ .+..-..++.|.++..++..+++. ...+|++ +.+..+..+.||.+-|.++.++|
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~------TCalWDi------e~g~~~~~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDM------TCALWDI------ETGQQTQVFHGHTGDVMSLSLSP 196 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCCCceEecCCCc------eEEEEEc------ccceEEEEecCCcccEEEEecCC
Confidence 4 21 11 11 233445667777777776655543 3344544 45678889999999999999999
Q ss_pred -CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec---
Q 020461 157 -LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--- 232 (326)
Q Consensus 157 -~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--- 232 (326)
+++.|++|+.|++.++||++.+.+.+.+ .+|+..|.++.|.|+|.-++||+.|++.++||+|..+.+..+.++
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF---~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTF---EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII 273 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEee---cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence 8999999999999999999999887766 489999999999999999999999999999999998888888654
Q ss_pred cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcE
Q 020461 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYV 312 (326)
Q Consensus 233 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i 312 (326)
..+++++||..|+.++++..+- ...+|+...++.++.+.||..+|.++..+|||..++|||+|.++
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~--------------~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDF--------------TCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred CCceeEEEcccccEEEeeecCC--------------ceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhe
Confidence 4789999999998888764322 34678888888899999999999999999999999999999999
Q ss_pred EEee
Q 020461 313 RLHH 316 (326)
Q Consensus 313 ~l~~ 316 (326)
|||.
T Consensus 340 riW~ 343 (343)
T KOG0286|consen 340 RIWA 343 (343)
T ss_pred eecC
Confidence 9995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-45 Score=293.84 Aligned_cols=281 Identities=24% Similarity=0.367 Sum_probs=240.4
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC--CCeEEEEeCCCcEEEEEccCCc
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
|-..+|....||+|++.|||||.+|.+++|+..+...+.+|++|+..|.++.|+|. +..++||+.||++++|++++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 45678999999999999999999999999999999999999999999999999997 5589999999999999999877
Q ss_pred EEEEEec-CCCcceeeeecCCeEEEEEc-CccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 86 QLFTFNF-DSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
.+..+.. ...+..+.|+|.+++...+. +... .+|++ .+...+...+||...|.+++|+|+|..++|
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW------RlWD~------~tk~ElL~QEGHs~~v~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW------RLWDL------ETKSELLLQEGHSKGVFSIAFQPDGSLAAT 320 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccch------hhccc------ccchhhHhhcccccccceeEecCCCceeec
Confidence 7766653 45566778888877765432 2211 12222 344566677899999999999999999999
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-ccceEEEEeCC
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~ 242 (326)
||.|..-+|||+++++++..+ .+|..+|.+|+|+|+|..|||||.|++++|||++...++..++. ...|.-|.++|
T Consensus 321 GGlD~~~RvWDlRtgr~im~L---~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFL---AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred cCccchhheeecccCcEEEEe---cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc
Confidence 999999999999999987655 47999999999999999999999999999999999888888764 45688999999
Q ss_pred CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
....++++++.|. .+++|.....++++.+.||.+.|.+++++||+.+++|++.|.+++||.
T Consensus 398 ~~g~fL~TasyD~-------------t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 398 QEGYFLVTASYDN-------------TVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCeEEEEcccCc-------------ceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 7666666666554 357788888888999999999999999999999999999999999996
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-41 Score=256.56 Aligned_cols=246 Identities=24% Similarity=0.345 Sum_probs=204.8
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
+.+.||...|..+..++||++.+++|.|+++|+||+.+++....|.+|...|.+++|++|.+.++||+.|++|++||...
T Consensus 57 r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g 136 (315)
T KOG0279|consen 57 RRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG 136 (315)
T ss_pred eeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC--CcEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTI 161 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l 161 (326)
. +.+.. .-.++...|.++.|+|. ..+|
T Consensus 137 ~-ck~t~--------------------------------------------------~~~~~~~WVscvrfsP~~~~p~I 165 (315)
T KOG0279|consen 137 V-CKYTI--------------------------------------------------HEDSHREWVSCVRFSPNESNPII 165 (315)
T ss_pred c-EEEEE--------------------------------------------------ecCCCcCcEEEEEEcCCCCCcEE
Confidence 2 11110 00122578999999998 6799
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeC
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS 241 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s 241 (326)
+++|.|++|++||+++.+....+ .+|++.++.+.+||||..+++|+.||.+.+||++.++.+..+.+...+++++|+
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~~---~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fs 242 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTTF---IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFS 242 (315)
T ss_pred EEccCCceEEEEccCCcchhhcc---ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEec
Confidence 99999999999999987766554 589999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc---------ccccCcceeEEEECCCCceEEeecCCCcE
Q 020461 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG---------VKGHFGPINALAFNPDGKSFSSGGEDGYV 312 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---------~~~h~~~v~~v~~s~d~~~lat~s~Dg~i 312 (326)
|.--.++.+.+.. +++|+...+..+.. .+.-.....+++||+||..|.+|-.|+.|
T Consensus 243 pnrywL~~at~~s---------------IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 243 PNRYWLCAATATS---------------IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI 307 (315)
T ss_pred CCceeEeeccCCc---------------eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence 9765555544332 34444333222111 11223456889999999999999999999
Q ss_pred EEeecC
Q 020461 313 RLHHFD 318 (326)
Q Consensus 313 ~l~~~~ 318 (326)
|+|.+.
T Consensus 308 rv~qv~ 313 (315)
T KOG0279|consen 308 RVWQVA 313 (315)
T ss_pred EEEEee
Confidence 999874
No 6
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=9.7e-40 Score=245.43 Aligned_cols=288 Identities=32% Similarity=0.631 Sum_probs=241.3
Q ss_pred ceeeeecCCceeEEEEc---cCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEE
Q 020461 3 PILMKGHERPLTYLKYN---KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s---~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~w 79 (326)
|++-.||.-+|..++|| |+|-+|.+++.|+.-.+-+-++|..+.+|.+|.++||+..+..+-...++++.|-+.++|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 68889999999999999 578899999999999999999999999999999999999998877788999999999999
Q ss_pred EccCCcEEEEEecCCCcceeeeecCCeEEEEEc-CccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (326)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (326)
|.-+|..+..+++..-+..+.|+.+...++.++ ++.+.+ ..+.+ ...+...+.+|.+.|..+.|....
T Consensus 87 ~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrv------fdln~-----p~App~E~~ghtg~Ir~v~wc~eD 155 (334)
T KOG0278|consen 87 DAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRV------FDLNR-----PKAPPKEISGHTGGIRTVLWCHED 155 (334)
T ss_pred hhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhh------hhccC-----CCCCchhhcCCCCcceeEEEeccC
Confidence 999999999998888888888886655443322 222211 11111 123455678999999999999988
Q ss_pred cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEE
Q 020461 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238 (326)
Q Consensus 159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 238 (326)
+.|++...|++||+||.++++.+..+. -..+|+++-++++|.+| |-..-+.|++||.++.+.++.+..+..+.+.
T Consensus 156 ~~iLSSadd~tVRLWD~rTgt~v~sL~----~~s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~P~nV~SA 230 (334)
T KOG0278|consen 156 KCILSSADDKTVRLWDHRTGTEVQSLE----FNSPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKMPCNVESA 230 (334)
T ss_pred ceEEeeccCCceEEEEeccCcEEEEEe----cCCCCcceeeccCCCEE-EEecCceeEEeccccccceeeccCccccccc
Confidence 999999999999999999998877664 34679999999999754 5555678999999999999999999999999
Q ss_pred EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc-cccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
+++|.. .++++|++|. ..+.|+-.++++++.+ ++|.++|.|+.|+|||..-|+||+||+||||+.
T Consensus 231 SL~P~k-~~fVaGged~-------------~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 231 SLHPKK-EFFVAGGEDF-------------KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred cccCCC-ceEEecCcce-------------EEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 999987 6677777764 3455666777777775 899999999999999999999999999999998
Q ss_pred CCC
Q 020461 318 DPD 320 (326)
Q Consensus 318 ~~~ 320 (326)
-+.
T Consensus 297 ~~~ 299 (334)
T KOG0278|consen 297 TPG 299 (334)
T ss_pred cCC
Confidence 663
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.4e-39 Score=275.07 Aligned_cols=245 Identities=27% Similarity=0.463 Sum_probs=211.6
Q ss_pred eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC-------------------------------CeeeeccCcccce
Q 020461 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-------------------------------ERLGTYRGHNGAV 55 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~-------------------------------~~~~~~~~h~~~V 55 (326)
..-...++|+.|++|+.+||.|-.|..|++|.+... ....++.||.++|
T Consensus 375 ~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 375 HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred EEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence 334456899999999999999999999999977631 1123467999999
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCC
Q 020461 56 WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 135 (326)
Q Consensus 56 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (326)
..+.|+|+.++|+++|.|+++|+|.+.+..++
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~------------------------------------------------ 486 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL------------------------------------------------ 486 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeE------------------------------------------------
Confidence 99999999999999999999999999875432
Q ss_pred CceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeE
Q 020461 136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215 (326)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i 215 (326)
...+||..+|..+.|+|.|.+|+|||.|++.++|......+.+. ..+|...|.|+.|+|+..|++|||.|.++
T Consensus 487 ----V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi---faghlsDV~cv~FHPNs~Y~aTGSsD~tV 559 (707)
T KOG0263|consen 487 ----VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI---FAGHLSDVDCVSFHPNSNYVATGSSDRTV 559 (707)
T ss_pred ----EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh---hcccccccceEEECCcccccccCCCCceE
Confidence 23468899999999999999999999999999999876555543 46899999999999999999999999999
Q ss_pred EEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEE
Q 020461 216 KLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 294 (326)
Q Consensus 216 ~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 294 (326)
|+||+.+|..++-|. +..++.++++||+|..+++++ .++ .+.+|+...+..+..+.+|.+.|.++
T Consensus 560 RlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~-ed~-------------~I~iWDl~~~~~v~~l~~Ht~ti~Sl 625 (707)
T KOG0263|consen 560 RLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD-EDG-------------LIKIWDLANGSLVKQLKGHTGTIYSL 625 (707)
T ss_pred EEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc-cCC-------------cEEEEEcCCCcchhhhhcccCceeEE
Confidence 999999999999986 457899999999988777654 332 36788888888899999999999999
Q ss_pred EECCCCceEEeecCCCcEEEeecCCC
Q 020461 295 AFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 295 ~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.||.||..||+|+.|.+|++|++..-
T Consensus 626 sFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 626 SFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999999999988643
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.7e-39 Score=256.88 Aligned_cols=281 Identities=25% Similarity=0.424 Sum_probs=228.6
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 89 (326)
+.+|..++|.|+|++|++|+..|.+.+|+...-.....+.+|..+|.++.|++++.+++||+.+|.||+|+.+.......
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 45789999999999999999999999999865555556689999999999999999999999999999999865432222
Q ss_pred Eec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC
Q 020461 90 FNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (326)
Q Consensus 90 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~ 168 (326)
..+ ...++.+.|++.+..++.+.+ ++.+++|..... ..-..++||.--|.++.|+|....+++||.|.
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~Sd-----Dg~ikiWdf~~~------kee~vL~GHgwdVksvdWHP~kgLiasgskDn 244 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSD-----DGTIKIWDFRMP------KEERVLRGHGWDVKSVDWHPTKGLIASGSKDN 244 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecC-----CCeEEEEeccCC------chhheeccCCCCcceeccCCccceeEEccCCc
Confidence 223 367888899986654444433 234455554332 23345689999999999999999999999999
Q ss_pred cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCee
Q 020461 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHV 247 (326)
Q Consensus 169 ~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~ 247 (326)
.|++||.++++++.++ .+|...|+.+.|++++++|+|+|.|..++++|+++.+.++.+. +...+.++.|+|....+
T Consensus 245 lVKlWDprSg~cl~tl---h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATL---HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL 321 (464)
T ss_pred eeEeecCCCcchhhhh---hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccc
Confidence 9999999999998765 4799999999999999999999999999999999888777776 66789999999999999
Q ss_pred EEecCCCcceeEeecccCceeeeEeecccceeeecc-ccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 248 VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG-VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
+++||.|+..+ .|.....+++.. ..+|...|++++|+|=|-.||+|+.|.++|+|.-
T Consensus 322 ftsgg~Dgsvv-------------h~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 322 FTSGGSDGSVV-------------HWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eeeccCCCceE-------------EEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99988887543 232222223322 3579999999999999999999999999999963
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8e-37 Score=248.25 Aligned_cols=277 Identities=25% Similarity=0.479 Sum_probs=232.7
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 90 (326)
..|++++|+.+|..||+|+.||.+|||+ .+|.++.++..|.++|.++.|+..|.+|++++.|+++-+||..+++....+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 4689999999999999999999999999 478889999999999999999999999999999999999999999988888
Q ss_pred ecCCCc-ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCc
Q 020461 91 NFDSPA-RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (326)
Q Consensus 91 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~ 169 (326)
.+.... ..++|-..+.++...++. .+++..+. ...++.++.||+++|+.+.|+|.+.+|++++.|++
T Consensus 315 ~~~s~~~lDVdW~~~~~F~ts~td~------~i~V~kv~------~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSNDEFATSSTDG------CIHVCKVG------EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred eeccCCccceEEecCceEeecCCCc------eEEEEEec------CCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence 776544 567887777777665553 33344332 23577788999999999999999999999999999
Q ss_pred EEEEECCCCccccccccccCcceeeEEEEEcCCCC---------eEEEEeCCCeEEEeecCCcceEEEE-eeccceEEEE
Q 020461 170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGS---------HFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVT 239 (326)
Q Consensus 170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~---------~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~ 239 (326)
++||......+...+ .+|+..|..+.|+|+|. .+++++.|++|++||+..+.++..+ .+..+|.+++
T Consensus 383 lkiWs~~~~~~~~~l---~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva 459 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDL---QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA 459 (524)
T ss_pred eEeeecCCCcchhhh---hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE
Confidence 999998877666544 47999999999998654 6999999999999999999999999 5778999999
Q ss_pred eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
|+|++..++.+. .|+. +.+|+...++.++.+.+. +.|..+.|+.+|.+|..+-.||.+++-+|+
T Consensus 460 fS~~g~ylAsGs-~dg~-------------V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 460 FSPNGRYLASGS-LDGC-------------VHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ecCCCcEEEecC-CCCe-------------eEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999998877653 3332 345666666666666553 459999999999999999999999997764
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-36 Score=249.00 Aligned_cols=289 Identities=21% Similarity=0.310 Sum_probs=221.7
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc---CcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR---GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~---~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
.++.|...|.|+.|+|||+++++++.||++.+||-++|+.+.++. +|++.|++++|+||+..++|+|.|+++|+||+
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV 264 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV 264 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence 467799999999999999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred cCCcEEEEEecCCCccee---eeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461 82 ETGAQLFTFNFDSPARSV---DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (326)
.+++++..+.....+... .+..++.++.++...++ .+... . .......+.||+..|+++..+|++
T Consensus 265 s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i------n~ln~----~--d~~~~~~i~GHnK~ITaLtv~~d~ 332 (603)
T KOG0318|consen 265 STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI------NYLNP----S--DPSVLKVISGHNKSITALTVSPDG 332 (603)
T ss_pred eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE------EEecc----c--CCChhheecccccceeEEEEcCCC
Confidence 999988888665432111 12235555544433322 22211 1 123677889999999999999999
Q ss_pred cEEEEeeCCCcEEEEECCCCcccccc--------ccc----------------------------------c--------
Q 020461 159 RTIISAGEDAIVRIWDTETGKLLKES--------DKE----------------------------------T-------- 188 (326)
Q Consensus 159 ~~l~s~~~d~~i~~wd~~~~~~~~~~--------~~~----------------------------------~-------- 188 (326)
.+|++|+-||.|.-||..++..-+.. ... .
T Consensus 333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~la 412 (603)
T KOG0318|consen 333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLA 412 (603)
T ss_pred CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEE
Confidence 99999999999999998765443110 000 0
Q ss_pred ----------------------------CcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce---EEEEeeccceEE
Q 020461 189 ----------------------------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL---IKTYVTERPVNA 237 (326)
Q Consensus 189 ----------------------------~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~ 237 (326)
.-.....+++++|+++.++.|+.|+.|++|.+...+. .....+..++.+
T Consensus 413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~ 492 (603)
T KOG0318|consen 413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITD 492 (603)
T ss_pred EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceE
Confidence 0112345677899999999999999999999876543 233456678999
Q ss_pred EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee-eeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE-EIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
+++||++..++++-...... +|+....+ ....+..|.+.|++|+|||+.+++||||-|-+|.||+
T Consensus 493 vaySpd~~yla~~Da~rkvv--------------~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 493 VAYSPDGAYLAAGDASRKVV--------------LYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EEECCCCcEEEEeccCCcEE--------------EEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 99999999888765444332 23322211 2233456999999999999999999999999999999
Q ss_pred cCC
Q 020461 317 FDP 319 (326)
Q Consensus 317 ~~~ 319 (326)
++.
T Consensus 559 v~k 561 (603)
T KOG0318|consen 559 VKK 561 (603)
T ss_pred ccC
Confidence 863
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=232.38 Aligned_cols=235 Identities=17% Similarity=0.261 Sum_probs=197.1
Q ss_pred CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeee
Q 020461 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA 102 (326)
Q Consensus 23 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 102 (326)
-+|+++|-|++||+|.+.+|.|..+++...+.|+.+.+.|+++.|++|+.- .||+||++++..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np---------------- 73 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNP---------------- 73 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCC----------------
Confidence 479999999999999999999999999888899999999999999888775 699999986532
Q ss_pred cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccc
Q 020461 103 VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182 (326)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 182 (326)
.++..+.+|.+.|+.+.|..+|+++++||+||++||||++...+.+
T Consensus 74 ----------------------------------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR 119 (311)
T KOG0315|consen 74 ----------------------------------NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR 119 (311)
T ss_pred ----------------------------------CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch
Confidence 2456678899999999999999999999999999999999855544
Q ss_pred ccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec--cceEEEEeCCCCCeeEEecCCCcceeEe
Q 020461 183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--RPVNAVTMSPLLDHVVLGGGQDASAVTT 260 (326)
Q Consensus 183 ~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 260 (326)
.+ .|..+|+++..+|+...|++|..+|.|++||++...+.+++.++ .++.++.+.|++..++.+...+.+++.
T Consensus 120 ~~----~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW- 194 (311)
T KOG0315|consen 120 NY----QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVW- 194 (311)
T ss_pred hc----cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEE-
Confidence 43 57799999999999999999999999999999998887777553 578999999999988876554444332
Q ss_pred ecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 261 ~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
+..... ....-+++..++.|++.+..+.||||+++|||+|.|.+++||+.+.-
T Consensus 195 -~l~~~~------~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 195 -RLLNHQ------TASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred -EccCCC------ccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 211111 01123556778999999999999999999999999999999999875
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.5e-38 Score=251.35 Aligned_cols=235 Identities=21% Similarity=0.310 Sum_probs=203.7
Q ss_pred ceeeeecCCceeEEEEccC--CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461 3 PILMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~--~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd 80 (326)
..+|+||...+.++.|+|. +.-||||+.||++++|.+++...+..+.+|...|..++|+|+|++|+|++.|.+-++||
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD 289 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWD 289 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcc
Confidence 3689999999999999997 56899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461 81 VETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (326)
Q Consensus 81 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (326)
+.++..+.... +...+.++.|.+++.+++.++- +..-.+|++ .++..++.+.||..+|..++|+|+|.
T Consensus 290 ~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl-----D~~~RvWDl------Rtgr~im~L~gH~k~I~~V~fsPNGy 358 (459)
T KOG0272|consen 290 LETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL-----DSLGRVWDL------RTGRCIMFLAGHIKEILSVAFSPNGY 358 (459)
T ss_pred cccchhhHhhcccccccceeEecCCCceeeccCc-----cchhheeec------ccCcEEEEecccccceeeEeECCCce
Confidence 99987654433 4566778888887777665432 222233433 46789999999999999999999999
Q ss_pred EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEE
Q 020461 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA 237 (326)
Q Consensus 160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~ 237 (326)
.++|||.|++++|||++..+.+..+ .+|...|+.|.|+| .|.+|+|++.|++++||..++..+++.+. ++..|.+
T Consensus 359 ~lATgs~Dnt~kVWDLR~r~~ly~i---pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s 435 (459)
T KOG0272|consen 359 HLATGSSDNTCKVWDLRMRSELYTI---PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVIS 435 (459)
T ss_pred EEeecCCCCcEEEeeecccccceec---ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEE
Confidence 9999999999999999987776554 58999999999998 78899999999999999999999999986 5788999
Q ss_pred EEeCCCCCeeEEec
Q 020461 238 VTMSPLLDHVVLGG 251 (326)
Q Consensus 238 ~~~s~~~~~~~~~~ 251 (326)
+.+++++..+++++
T Consensus 436 ~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 436 LDISPDSQAIATSS 449 (459)
T ss_pred EEeccCCceEEEec
Confidence 99999988776654
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-36 Score=230.80 Aligned_cols=248 Identities=24% Similarity=0.366 Sum_probs=203.6
Q ss_pred eeeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecC-----CCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461 4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFAD-----NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~-----~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~ 77 (326)
-+|++|.+.|+.++-.+. .+.|++++.|.++.+|++. .|..++.++||...|..+..++|+++.+++|.|+++|
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 478999999999999987 5689999999999999764 4566889999999999999999999999999999999
Q ss_pred EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
+||+.+++... .+.||...|.+++|+|+
T Consensus 89 lWDl~~g~~t~----------------------------------------------------~f~GH~~dVlsva~s~d 116 (315)
T KOG0279|consen 89 LWDLATGESTR----------------------------------------------------RFVGHTKDVLSVAFSTD 116 (315)
T ss_pred EEEecCCcEEE----------------------------------------------------EEEecCCceEEEEecCC
Confidence 99998775432 34578888999999999
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC--CCeEEEEeCCCeEEEeecCCcceEEEEe-eccc
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTYV-TERP 234 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~ 234 (326)
...+++|+.|.+|++|++... +..++. ..+++.-|.|+.|+|+ ..++++++.|+++|+||+++.+....+. +...
T Consensus 117 n~qivSGSrDkTiklwnt~g~-ck~t~~-~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~ 194 (315)
T KOG0279|consen 117 NRQIVSGSRDKTIKLWNTLGV-CKYTIH-EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGY 194 (315)
T ss_pred CceeecCCCcceeeeeeeccc-EEEEEe-cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccccc
Confidence 999999999999999998754 333332 2234788999999998 7899999999999999999999888876 4568
Q ss_pred eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE
Q 020461 235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314 (326)
Q Consensus 235 ~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l 314 (326)
++.+++||+|..++. ||.|+ +..+|+....+.+. ..+|..+|++++|+|+...|+.+. +..|+|
T Consensus 195 v~t~~vSpDGslcas-Ggkdg-------------~~~LwdL~~~k~ly-sl~a~~~v~sl~fspnrywL~~at-~~sIkI 258 (315)
T KOG0279|consen 195 VNTVTVSPDGSLCAS-GGKDG-------------EAMLWDLNEGKNLY-SLEAFDIVNSLCFSPNRYWLCAAT-ATSIKI 258 (315)
T ss_pred EEEEEECCCCCEEec-CCCCc-------------eEEEEEccCCceeE-eccCCCeEeeEEecCCceeEeecc-CCceEE
Confidence 999999999977665 44443 33455555554433 346888999999999887777655 555999
Q ss_pred eecCCCc
Q 020461 315 HHFDPDY 321 (326)
Q Consensus 315 ~~~~~~~ 321 (326)
|++++..
T Consensus 259 wdl~~~~ 265 (315)
T KOG0279|consen 259 WDLESKA 265 (315)
T ss_pred Eeccchh
Confidence 9998754
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.1e-36 Score=254.69 Aligned_cols=301 Identities=25% Similarity=0.415 Sum_probs=233.2
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe--eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
+...||.+.|+++.|+.|.++|++||.|-++|||.++..+. ...+.+|..+|-++-|..+...+++.+.||.+.+|..
T Consensus 139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~ 218 (893)
T KOG0291|consen 139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTC 218 (893)
T ss_pred eeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEe
Confidence 56789999999999999999999999999999998876554 6778999999999999999999999999999999987
Q ss_pred cC-----------------------CcE-----EE----EEec---CCCcceeeeecCCeEEEEEcCc-ccee---ce--
Q 020461 82 ET-----------------------GAQ-----LF----TFNF---DSPARSVDFAVGDKLAVITTDP-FMEL---NS-- 120 (326)
Q Consensus 82 ~~-----------------------~~~-----~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~-- 120 (326)
.. ++. .. ..-+ ...+.+..++++..+++++-.. .+.+ ..
T Consensus 219 ~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~ 298 (893)
T KOG0291|consen 219 DLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFN 298 (893)
T ss_pred cCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCce
Confidence 61 111 00 0001 1344555666666555544221 1100 00
Q ss_pred eeeeeee--------ccC----CC--------------CCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEE
Q 020461 121 AIHVKRI--------ARD----PA--------------DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174 (326)
Q Consensus 121 ~~~~~~~--------~~~----~~--------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd 174 (326)
.++...+ ..+ +. -++...++...+|...+++++++|||+++++|++||.|||||
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN 378 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence 0010000 000 00 011234555678999999999999999999999999999999
Q ss_pred CCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccc--eEEEEeCCCCCeeEEecC
Q 020461 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP--VNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 175 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~~~~ 252 (326)
..++.|+.++. .|...|+.+.|+..|..+++.|.||+|+.||+..+.+.+++..+.+ ..|++..|.|+.++++ +
T Consensus 379 ~~SgfC~vTFt---eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG-~ 454 (893)
T KOG0291|consen 379 TQSGFCFVTFT---EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAG-A 454 (893)
T ss_pred ccCceEEEEec---cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEee-c
Confidence 99999988774 6999999999999999999999999999999999999999987655 4567777777765554 3
Q ss_pred CCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 253 QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.| .+++.+|+.++++.+-.++||.+||.+++|+|++..||+||+|.+||+|++=..
T Consensus 455 ~d------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 455 QD------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred cc------------eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 33 357788888899999999999999999999999999999999999999987543
No 15
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.1e-37 Score=240.87 Aligned_cols=246 Identities=22% Similarity=0.375 Sum_probs=215.0
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
+++.||.+=|.|+++.|...++++|+.|++++|||+++|.+..++.||...|..+++|+-..|+++++.|+.||-||++.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 68899999999999999999999999999999999999999999999999999999999889999999999999999986
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
++.+. ..-||.+.|.++..+|.-..|++
T Consensus 225 nkvIR----------------------------------------------------~YhGHlS~V~~L~lhPTldvl~t 252 (460)
T KOG0285|consen 225 NKVIR----------------------------------------------------HYHGHLSGVYCLDLHPTLDVLVT 252 (460)
T ss_pred hhhHH----------------------------------------------------HhccccceeEEEeccccceeEEe
Confidence 65321 22478889999999999999999
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCC
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP 242 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~ 242 (326)
|+.|.++++||+++...+..+ .||..+|..+.+.|....++|||.|++|++||++.++....+. +...+.+++.+|
T Consensus 253 ~grDst~RvWDiRtr~~V~~l---~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP 329 (460)
T KOG0285|consen 253 GGRDSTIRVWDIRTRASVHVL---SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP 329 (460)
T ss_pred cCCcceEEEeeecccceEEEe---cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC
Confidence 999999999999988766654 5899999999999988899999999999999999998887775 456899999999
Q ss_pred CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
....++.++. | .++-|+...++.++.+.+|++.|++++.+.|+- +++|++.|.+.+|+....
T Consensus 330 ~e~~fASas~-d--------------nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 330 KENLFASASP-D--------------NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred chhhhhccCC-c--------------cceeccCCccchhhccccccceeeeeeeccCce-EEEcCCceEEEEEecCcC
Confidence 8766665432 2 355677777777788899999999999987765 556999999999998754
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.5e-36 Score=254.59 Aligned_cols=271 Identities=23% Similarity=0.358 Sum_probs=212.2
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 84 (326)
-+.||...++++++||||+++|+|+.||+|+|||...+-|+.+|..|+..|..+.|+..++.++++|.||+||.||+...
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCCcceeeeec--CCeE-EEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 85 AQLFTFNFDSPARSVDFAV--GDKL-AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
++-.++..+.|..-.+++. .+.+ ++...+.+ .+.+|.+ ++|+.+-.++||.++|.++.|+|.+..|
T Consensus 425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F-----~IfvWS~------qTGqllDiLsGHEgPVs~l~f~~~~~~L 493 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF-----EIFVWSV------QTGQLLDILSGHEGPVSGLSFSPDGSLL 493 (893)
T ss_pred ceeeeecCCCceeeeEEEEcCCCCEEEeeccceE-----EEEEEEe------ecCeeeehhcCCCCcceeeEEccccCeE
Confidence 9988888777765554443 2333 33333322 3455554 4678888999999999999999999999
Q ss_pred EEeeCCCcEEEEECCCCcc-ccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEe
Q 020461 162 ISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 240 (326)
+++++|.+||+||+-.... ..++ .+...++.+.|.|+|..+++++.||.|.+||.+....+..+..-
T Consensus 494 aS~SWDkTVRiW~if~s~~~vEtl----~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgr-------- 561 (893)
T KOG0291|consen 494 ASGSWDKTVRIWDIFSSSGTVETL----EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGR-------- 561 (893)
T ss_pred EeccccceEEEEEeeccCceeeeE----eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccch--------
Confidence 9999999999999854422 2222 46678999999999999999999999999999876554443211
Q ss_pred CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.=+.+|... .|.+ ...-.....+.+++.||+||+++.+|+....|.|++++..
T Consensus 562 -----kD~~~gR~~------~D~~----------------ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 562 -----KDLSGGRKE------TDRI----------------TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred -----hhccccccc------ccee----------------ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 111111100 0100 0011122357899999999999999999999999999887
Q ss_pred ceeee
Q 020461 321 YFNIK 325 (326)
Q Consensus 321 ~~~~~ 325 (326)
-+-+|
T Consensus 615 vllkk 619 (893)
T KOG0291|consen 615 VLLKK 619 (893)
T ss_pred heeee
Confidence 65443
No 17
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-36 Score=242.74 Aligned_cols=287 Identities=20% Similarity=0.312 Sum_probs=223.7
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC---eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd 80 (326)
.++..|.+.|..+.||++|++|||++.|.+.-||.+.... ..+++.+|..+|.-+.||||.++|++|+.|..+++||
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 4678899999999999999999999999999999876543 4778999999999999999999999999999999999
Q ss_pred ccCCcEEEEEecC--CCcceeeeecCCeE-EEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC-ccceeEEEEec
Q 020461 81 VETGAQLFTFNFD--SPARSVDFAVGDKL-AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGP 156 (326)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 156 (326)
..+|.....+... ....++.|.|+..- ++.+++.. +..|.. .+.....+++- ...|.+++.++
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~------i~~wdl-------Dgn~~~~W~gvr~~~v~dlait~ 364 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRT------IIMWDL-------DGNILGNWEGVRDPKVHDLAITY 364 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCc------EEEecC-------CcchhhcccccccceeEEEEEcC
Confidence 9999887766543 44566777776544 33333321 111111 11122223332 24588999999
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccc--
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP-- 234 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-- 234 (326)
||+++++...|..|++++.++......+ .-..+++++++|.|++++++.-.+..+++||++....++++.....
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~li----se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~ 440 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGLI----SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH 440 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhccc----cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc
Confidence 9999999999999999998765444322 2346799999999999999999999999999998888888764332
Q ss_pred -eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC-CceEEeecCCCcE
Q 020461 235 -VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD-GKSFSSGGEDGYV 312 (326)
Q Consensus 235 -~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d-~~~lat~s~Dg~i 312 (326)
+---||.-..+.++++|++|. .+++|....+.++..+.||...|++|+|+|. -.+||+||+||+|
T Consensus 441 fiIrSCFgg~~~~fiaSGSED~-------------kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSEDS-------------KVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred eEEEeccCCCCcceEEecCCCc-------------eEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeE
Confidence 333345544445666666654 4678999999999999999999999999995 5679999999999
Q ss_pred EEeecCCC
Q 020461 313 RLHHFDPD 320 (326)
Q Consensus 313 ~l~~~~~~ 320 (326)
|||...+.
T Consensus 508 RIWg~~~~ 515 (519)
T KOG0293|consen 508 RIWGPSDN 515 (519)
T ss_pred EEecCCcc
Confidence 99988765
No 18
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-36 Score=239.09 Aligned_cols=246 Identities=24% Similarity=0.374 Sum_probs=192.1
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCee-eeccCcccceEEEEEcC-----CCCeEEEEeCCCcEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSR-----DSMTLITGSADQTAK 77 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~-~~~~~h~~~V~~~~~~~-----~~~~l~s~~~d~~i~ 77 (326)
-+.++|..=|.|++|+|||+.||+|+.||+|++||-++|+.+ ..+++|...|++++|.| ..++|+++|.||+|+
T Consensus 151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vr 230 (480)
T KOG0271|consen 151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVR 230 (480)
T ss_pred eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEE
Confidence 467899999999999999999999999999999999998764 67999999999999965 578999999999999
Q ss_pred EEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceee---------------e---------ee-------
Q 020461 78 LWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAI---------------H---------VK------- 125 (326)
Q Consensus 78 ~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~---------~~------- 125 (326)
|||+..++++..+. +..++.++.+.-.+.+...+.+..+.++... + +.
T Consensus 231 IWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t 310 (480)
T KOG0271|consen 231 IWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT 310 (480)
T ss_pred EEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence 99999988776654 4556666665422222221111111000000 0 00
Q ss_pred ------------------------------------eeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCc
Q 020461 126 ------------------------------------RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (326)
Q Consensus 126 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~ 169 (326)
.+.-.......+++..+.||+..|+.+.|+|+++++++++.|..
T Consensus 311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence 00000000112344456789999999999999999999999999
Q ss_pred EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeE
Q 020461 170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVV 248 (326)
Q Consensus 170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~ 248 (326)
|++||-++|+.+..+. ||-..|..++|+.|..+|++||.|.++++||+++.+....++ +...+.++.|+|+|..++
T Consensus 391 VkLW~g~tGk~lasfR---GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFR---GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred eeeeeCCCcchhhhhh---hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence 9999999999887764 899999999999999999999999999999999999988887 667899999999998877
Q ss_pred EecC
Q 020461 249 LGGG 252 (326)
Q Consensus 249 ~~~~ 252 (326)
.+|.
T Consensus 468 sggk 471 (480)
T KOG0271|consen 468 SGGK 471 (480)
T ss_pred cCCC
Confidence 6544
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2e-34 Score=238.81 Aligned_cols=284 Identities=32% Similarity=0.518 Sum_probs=229.1
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+++|.++|.+++|+|++++|++++.|+.+++|+..+++....+..|...+..+.|+|+++++++++.|+.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45679999999999999999999999999999999999888888899999999999999999999999999999999998
Q ss_pred CcEEEEEec-CCCcceeeeecCCeEEEEEc-CccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 84 GAQLFTFNF-DSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
++....+.. ...+.++.+.+...+++++. +. .+.++.+. .+.....+..|...+.++.|+|++.++
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~i~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l 150 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDK------TIKVWDVE------TGKCLTTLRGHTDWVNSVAFSPDGTFV 150 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCC------eEEEEECC------CcEEEEEeccCCCcEEEEEEcCcCCEE
Confidence 766666553 34667777777666665554 32 23333332 234556667888899999999998888
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE-eeccceEEEEe
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTM 240 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~ 240 (326)
++++.|+.|++||+++++....+. .|...+.++.+++++..+++++.|+.|++||+++++.+..+ .+...+.++.+
T Consensus 151 ~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 151 ASSSQDGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF 227 (289)
T ss_pred EEEcCCCcEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEE
Confidence 888889999999998777665543 67778999999999999999999999999999998888887 45668999999
Q ss_pred CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
+|++..++. ++.++ .+++|+.........+.+|...|.+++|+|++.+|++++.||.|++|+
T Consensus 228 ~~~~~~~~~-~~~~~-------------~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 228 SPDGYLLAS-GSEDG-------------TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEE-EcCCC-------------cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 998544444 33222 234444444444555668888999999999999999999999999995
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.3e-36 Score=257.56 Aligned_cols=247 Identities=24% Similarity=0.392 Sum_probs=203.0
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..|.||.++|+..+|+|+.++|++||.|+++|+|.+.+..++-.++||..|||.+.|+|-|-+|||||.|++.++|....
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH 524 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
. .+.+.+.||.+-|.|+.|+|+..++++
T Consensus 525 ~----------------------------------------------------~PlRifaghlsDV~cv~FHPNs~Y~aT 552 (707)
T KOG0263|consen 525 N----------------------------------------------------KPLRIFAGHLSDVDCVSFHPNSNYVAT 552 (707)
T ss_pred C----------------------------------------------------CchhhhcccccccceEEECCccccccc
Confidence 2 234456788999999999999999999
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCC
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP 242 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~ 242 (326)
||.|.++|+||+.+|..++.+ .||..+|+++++||+|.+|++|+.||.|++||+.++..+.++. +...+.++.|+.
T Consensus 553 GSsD~tVRlWDv~~G~~VRiF---~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~ 629 (707)
T KOG0263|consen 553 GSSDRTVRLWDVSTGNSVRIF---TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR 629 (707)
T ss_pred CCCCceEEEEEcCCCcEEEEe---cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec
Confidence 999999999999999887655 5899999999999999999999999999999999999888874 456899999999
Q ss_pred CCCeeEEecCCCcceeEeecccCceeeeEe-----e-------cccceeeeccccccCcceeEEEECCCCceEEeec
Q 020461 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKF-----F-------DKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 307 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~-------~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s 307 (326)
++..+++++++.. +..||...-...... . .......++.+.....+|..+.|..-.-.|+.|.
T Consensus 630 dg~vLasgg~Dns--V~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g~ 704 (707)
T KOG0263|consen 630 DGNVLASGGADNS--VRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVGP 704 (707)
T ss_pred CCCEEEecCCCCe--EEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEecc
Confidence 9998888776544 334444332221000 0 0011223455556667899999986555566553
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.8e-34 Score=227.74 Aligned_cols=289 Identities=16% Similarity=0.278 Sum_probs=229.1
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
+.+..|.++|.+++.+|+.++++||+.|-...||+..+++...++.+|...|.++.|+.++.+|+||+.+|.|++|...+
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST 137 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecC-CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 84 GAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
+.....+..+ ..+--+.|+|...+++++... ..+=.|.+. +......+.||+.++++-.|.|+|+.++
T Consensus 138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~D-----GsvWmw~ip------~~~~~kv~~Gh~~~ct~G~f~pdGKr~~ 206 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTD-----GSVWMWQIP------SQALCKVMSGHNSPCTCGEFIPDGKRIL 206 (399)
T ss_pred CceEEEeecccCceEEEEecccccEEEeecCC-----CcEEEEECC------CcceeeEecCCCCCcccccccCCCceEE
Confidence 9877666422 233445667765555544321 111122222 1246677899999999999999999999
Q ss_pred EeeCCCcEEEEECCCCcccccccccc------------------------------------------------Ccce--
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKET------------------------------------------------GHKK-- 192 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~------------------------------------------------~h~~-- 192 (326)
++..||+|++|+.++++.+..+.... ++..
T Consensus 207 tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 207 TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence 99999999999999988765544110 0111
Q ss_pred -eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeE
Q 020461 193 -TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK 271 (326)
Q Consensus 193 -~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (326)
.|-++.++..-++.|+|+.||+|.|||+.....-+...++..+..+.|-+ ...++++..++ .++
T Consensus 287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g--------------~v~ 351 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANG--------------KVR 351 (399)
T ss_pred hhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCc--------------eEE
Confidence 12223344555678999999999999999988877788888888888888 44444443322 345
Q ss_pred eecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 272 FFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
.|+..+++.+..+.||+..|.+++++|+.+.++|+|.|++.+||.++
T Consensus 352 ~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 352 QWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 67777777788899999999999999999999999999999998765
No 22
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.4e-36 Score=244.69 Aligned_cols=286 Identities=21% Similarity=0.329 Sum_probs=232.1
Q ss_pred eeeeecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCC-CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
.++.||.+.|+++.|.| .+.+|++|+.|+.|+||++.+ +.++++|.+|..+|..++|+++|..|+|+|.|+++++||.
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence 57899999999999999 899999999999999999987 8899999999999999999999999999999999999999
Q ss_pred cCCcEEEEEecCCCcceeeeecCC-eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (326)
++|+++..+..+....++.+.+++ ++++++.. +..+..|++. +++.+.....|.+.|..+.|-+.++.
T Consensus 288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~s-----d~ki~~wDiR------s~kvvqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGS-----DKKIRQWDIR------SGKVVQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred ccceEEEEEecCCCceeeecCCCCCcEEEEecC-----CCcEEEEecc------chHHHHHHHhhhhheeeeEEccCCce
Confidence 999999999999899999999877 44444332 2233334332 23344445567889999999999999
Q ss_pred EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce------EEEEeeccc
Q 020461 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL------IKTYVTERP 234 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~~~~ 234 (326)
+++.++|+++++|+....-.++.+.. .+.....++..+|++.++++-+.|+.|.++.+...-. ..-....+.
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy 434 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY 434 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc
Confidence 99999999999999987766554432 2345677899999999999999999999998653211 111123345
Q ss_pred eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc-eEEeecCCCcEE
Q 020461 235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVR 313 (326)
Q Consensus 235 ~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~ 313 (326)
...+.|||+++.++.+.+++ .+.+|+..+...+..++.|.+++..+.|+|... .+|||++||.|+
T Consensus 435 s~~v~fSpDG~~l~SGdsdG--------------~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDG--------------KVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred eeeEEEcCCCCeEEeecCCc--------------cEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeE
Confidence 66788999999888775544 245677777777888899999999999999765 699999999999
Q ss_pred Eee
Q 020461 314 LHH 316 (326)
Q Consensus 314 l~~ 316 (326)
+|+
T Consensus 501 iwd 503 (503)
T KOG0282|consen 501 IWD 503 (503)
T ss_pred ecC
Confidence 995
No 23
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.4e-34 Score=221.63 Aligned_cols=285 Identities=23% Similarity=0.396 Sum_probs=214.2
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC-CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
-.+.||++.|+.+.|+|+|.+|+||+.|..|.+|++... +-..++++|.++|..+.|.+|+..++++|.|++++.||++
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence 467899999999999999999999999999999996533 4466788999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCC-cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 83 TGAQLFTFNFDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
+|+.+..++.+.. ++.+....-+...+++.. .+...+++++....+ +..+ ...-+++++.|..++..+
T Consensus 121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgs----dD~t~kl~D~R~k~~------~~t~-~~kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGS----DDGTLKLWDIRKKEA------IKTF-ENKYQLTAVGFKDTSDQV 189 (338)
T ss_pred cceeeehhccccceeeecCccccCCeEEEecC----CCceEEEEeecccch------hhcc-ccceeEEEEEecccccce
Confidence 9999887765433 333332221222222221 123445555543211 1111 123467889999999999
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc----ceEEEEee-----c
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTYVT-----E 232 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~-----~ 232 (326)
.+|+-|+.|++||++.......+ .||...|+.+..+++|.++.+-+.|.++++||++.. .++.-+.. +
T Consensus 190 ~sggIdn~ikvWd~r~~d~~~~l---sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe 266 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRKNDGLYTL---SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE 266 (338)
T ss_pred eeccccCceeeeccccCcceEEe---ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence 99999999999999887766554 589999999999999999999999999999999864 33444432 2
Q ss_pred cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcE
Q 020461 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYV 312 (326)
Q Consensus 233 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i 312 (326)
...-.++|+|++..+.++.. |. ..+.|+......+-.+.||.+-|++++|+|....+.+++.|.+|
T Consensus 267 knlL~cswsp~~~~i~ags~-dr-------------~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 267 KNLLKCSWSPNGTKITAGSA-DR-------------FVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred hhcceeeccCCCCccccccc-cc-------------eEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence 23446778888766544332 22 23455555544555678999999999999999999999999999
Q ss_pred EEee
Q 020461 313 RLHH 316 (326)
Q Consensus 313 ~l~~ 316 (326)
.|=.
T Consensus 333 ~lge 336 (338)
T KOG0265|consen 333 YLGE 336 (338)
T ss_pred Eeec
Confidence 8743
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-34 Score=220.66 Aligned_cols=254 Identities=23% Similarity=0.416 Sum_probs=191.4
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC--CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
++-.+|+..|..++|+|.|++|+++|-|.++.||.-.++ +++.++.||...|.|++|+++|++||+|+.|+.|-+|.+
T Consensus 55 vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 55 VLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred eccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence 444679999999999999999999999999999986655 678999999999999999999999999999999999988
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
..+... +...++..|..-|..+.|+|...+|
T Consensus 135 deddEf-------------------------------------------------ec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 135 DEDDEF-------------------------------------------------ECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred cCCCcE-------------------------------------------------EEEeeeccccccccEEEEcCCccee
Confidence 644321 2344567788889999999999999
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeC
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS 241 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s 241 (326)
++++-|++|++|+-.....-.......+|...|.+++|++.|..|++++.|++++||...+.-. ..+...+..+.+.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---GMHSRALYDVPWD 242 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc---hhcccceEeeeec
Confidence 9999999999998763322222333468889999999999999999999999999998653211 1233456666666
Q ss_pred CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC-CceEEeecCCCcEEEeecC
Q 020461 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD-GKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d-~~~lat~s~Dg~i~l~~~~ 318 (326)
...++.+++++...++-... ...--.|+.. ...-..|.-.|++++|+|. ...|++|+.||.|++|.+.
T Consensus 243 --~~~IaS~ggD~~i~lf~~s~---~~d~p~~~l~----~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 243 --NGVIASGGGDDAIRLFKESD---SPDEPSWNLL----AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred --ccceEeccCCCEEEEEEecC---CCCCchHHHH----HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 23344455554433321110 0000011111 1123468789999999995 6789999999999999875
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-34 Score=228.26 Aligned_cols=285 Identities=22% Similarity=0.285 Sum_probs=233.5
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
.-+.||..+|+.+-|+|+-.++++++.|+++++||..++++...++||...|..++|+..|+++++++.|-.+++||..+
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT 181 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C-cEEEE-EecCCCcceeeeecCCeEEE-EEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461 84 G-AQLFT-FNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (326)
Q Consensus 84 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (326)
- +++.. ..++..+.++.+.|.+..++ ++.+. .++.|+. ..+.++.++.+|...|..++.+.||..
T Consensus 182 ~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~------tik~We~------~tg~cv~t~~~h~ewvr~v~v~~DGti 249 (406)
T KOG0295|consen 182 FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDN------TIKAWEC------DTGYCVKTFPGHSEWVRMVRVNQDGTI 249 (406)
T ss_pred HHHHHHHhcCcccceeeEEEEecCCeeeeccccc------ceeEEec------ccceeEEeccCchHhEEEEEecCCeeE
Confidence 2 22221 22344556666666443333 22222 3333433 456788999999999999999999999
Q ss_pred EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC---------------CCeEEEEeCCCeEEEeecCCcce
Q 020461 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD---------------GSHFLTGSLDKSAKLWDARTLEL 225 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~---------------~~~l~s~s~dg~i~iwd~~~~~~ 225 (326)
+++++.|.+|++|-+.++++...+ .+|+.+|.+++|.|. +.++.+++.|++||+||+.++.|
T Consensus 250 ~As~s~dqtl~vW~~~t~~~k~~l---R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c 326 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATKQCKAEL---REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC 326 (406)
T ss_pred EEecCCCceEEEEEeccchhhhhh---hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE
Confidence 999999999999999988766554 368889999987542 24899999999999999999999
Q ss_pred EEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEE
Q 020461 226 IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFS 304 (326)
Q Consensus 226 ~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~la 304 (326)
+.++. +..-+..++|+|-|..++.++.+. .++.|+....+....+..|..-|++++|..+-.+++
T Consensus 327 L~tL~ghdnwVr~~af~p~Gkyi~ScaDDk--------------tlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~Vv 392 (406)
T KOG0295|consen 327 LFTLVGHDNWVRGVAFSPGGKYILSCADDK--------------TLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVV 392 (406)
T ss_pred EEEEecccceeeeeEEcCCCeEEEEEecCC--------------cEEEEEeccceeeeccCCCcceeEEEecCCCCceEE
Confidence 99986 567899999999998888775433 245666666666666778989999999999999999
Q ss_pred eecCCCcEEEeec
Q 020461 305 SGGEDGYVRLHHF 317 (326)
Q Consensus 305 t~s~Dg~i~l~~~ 317 (326)
||+.|.++++|..
T Consensus 393 TGsVdqt~KvwEc 405 (406)
T KOG0295|consen 393 TGSVDQTVKVWEC 405 (406)
T ss_pred eccccceeeeeec
Confidence 9999999999964
No 26
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=215.38 Aligned_cols=251 Identities=22% Similarity=0.355 Sum_probs=209.3
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
..++.+|+++|.++.|+-||+|.++|+.|.+||+||...|.+++++.+|...|..++.+.|+..|++|+.|+.+.+||++
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
+|+... .+++|.+.|+.+.|+.....++
T Consensus 90 TGkv~R----------------------------------------------------r~rgH~aqVNtV~fNeesSVv~ 117 (307)
T KOG0316|consen 90 TGKVDR----------------------------------------------------RFRGHLAQVNTVRFNEESSVVA 117 (307)
T ss_pred cCeeee----------------------------------------------------ecccccceeeEEEecCcceEEE
Confidence 886543 3468889999999999999999
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~ 242 (326)
+|+.|.++++||-++... ..++........|.++.... ..+++||.||+++.||+|.+.+...+. ..+++++++++
T Consensus 118 SgsfD~s~r~wDCRS~s~-ePiQildea~D~V~Si~v~~--heIvaGS~DGtvRtydiR~G~l~sDy~-g~pit~vs~s~ 193 (307)
T KOG0316|consen 118 SGSFDSSVRLWDCRSRSF-EPIQILDEAKDGVSSIDVAE--HEIVAGSVDGTVRTYDIRKGTLSSDYF-GHPITSVSFSK 193 (307)
T ss_pred eccccceeEEEEcccCCC-CccchhhhhcCceeEEEecc--cEEEeeccCCcEEEEEeecceeehhhc-CCcceeEEecC
Confidence 999999999999875432 12222223456688887764 479999999999999999998866654 46899999999
Q ss_pred CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcce--eEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI--NALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
+++-++++.-+. .+++.+..+++.++.++||...= ...+++..-..+++||+||.|.+|++.++
T Consensus 194 d~nc~La~~l~s--------------tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 194 DGNCSLASSLDS--------------TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred CCCEEEEeeccc--------------eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 998877654322 35667777888888899997654 34556666788999999999999999887
Q ss_pred cee
Q 020461 321 YFN 323 (326)
Q Consensus 321 ~~~ 323 (326)
.+.
T Consensus 260 ~~~ 262 (307)
T KOG0316|consen 260 TQI 262 (307)
T ss_pred eee
Confidence 654
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.9e-34 Score=213.78 Aligned_cols=248 Identities=19% Similarity=0.281 Sum_probs=198.3
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
+++..+..|..+...|+++.||+++. ..||+||+.++. .+.+|.+|+..|.++.|..+|+.++|||.||++|+||++
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR 113 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR 113 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc
Confidence 34445667899999999999987765 588999998764 588999999999999999999999999999999999997
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
...+-..+ .+.++|+++..+|+...|+
T Consensus 114 ~~~~qR~~-----------------------------------------------------~~~spVn~vvlhpnQteLi 140 (311)
T KOG0315|consen 114 SLSCQRNY-----------------------------------------------------QHNSPVNTVVLHPNQTELI 140 (311)
T ss_pred Ccccchhc-----------------------------------------------------cCCCCcceEEecCCcceEE
Confidence 63221111 2447788899999999999
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce------EEEEe-eccce
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL------IKTYV-TERPV 235 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~-~~~~~ 235 (326)
+|.++|.|++||+....+..++.+. ....|.++...|||++++++...|+.++|++-+.+. +.++. +...+
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~i 218 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHI 218 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceE
Confidence 9999999999999887666655443 347899999999999999999999999999866433 33332 34567
Q ss_pred EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461 236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH 315 (326)
Q Consensus 236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~ 315 (326)
..+-+||++..+++++.+....+...|.. + +.-..+.+|+++++..+||.||.||+||+.|+++|+|
T Consensus 219 l~C~lSPd~k~lat~ssdktv~iwn~~~~---~----------kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 219 LRCLLSPDVKYLATCSSDKTVKIWNTDDF---F----------KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLW 285 (311)
T ss_pred EEEEECCCCcEEEeecCCceEEEEecCCc---e----------eeEEEeecCCceEEeeeeccCccEEEecCCCCceeec
Confidence 78889999999998877665444433321 0 1112367899999999999999999999999999999
Q ss_pred ecCCCc
Q 020461 316 HFDPDY 321 (326)
Q Consensus 316 ~~~~~~ 321 (326)
++...-
T Consensus 286 ~~~~~k 291 (311)
T KOG0315|consen 286 DLSAGK 291 (311)
T ss_pred ccccCc
Confidence 987643
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5e-33 Score=243.41 Aligned_cols=285 Identities=26% Similarity=0.426 Sum_probs=230.6
Q ss_pred cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc-cCCc
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV-ETGA 85 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~-~~~~ 85 (326)
|...+.++.|+++|+++++++.|+.+++|+..+.. ....+.+|...|..++|+|+++++++++.|++||+||+ ..+.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 36789999999999999999999999999998777 77788899999999999999999999999999999999 4457
Q ss_pred EEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461 86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (326)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 164 (326)
.+..+. +...+.++.|.+.+.+++.+.. +..+++|++. .++....+++|...|+.++|++++..|+++
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~-----D~tvriWd~~------~~~~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSD-----DGTVRIWDVR------TGECVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecC-----CCcEEEEecc------CCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence 777764 5667888999987765555433 3355566553 367889999999999999999999999999
Q ss_pred eCCCcEEEEECCCCc--cccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc----ceEEE
Q 020461 165 GEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER----PVNAV 238 (326)
Q Consensus 165 ~~d~~i~~wd~~~~~--~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~~~~~ 238 (326)
+.|+.|++||+.++. +...+....... .+++++|+|++.++++++.|+++++||++.+.++..+.... .+...
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecc
Confidence 999999999999988 344444332333 69999999999999999999999999999998888875322 22233
Q ss_pred EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccccc-CcceeEEEECCCCceEEeec--CCCcEEEe
Q 020461 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINALAFNPDGKSFSSGG--EDGYVRLH 315 (326)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s~d~~~lat~s--~Dg~i~l~ 315 (326)
.+++.+..+++ |..|. .+++|+......+..+.+| ...+..++++|...++++++ .|+.+++|
T Consensus 386 ~~~~~~~~i~s-g~~d~-------------~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 386 TLSTGGKLIYS-GSEDG-------------SVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred cccCCCCeEEE-EeCCc-------------eEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence 33444444333 33332 4567777777777888999 89999999999999999999 79999999
Q ss_pred ecCC
Q 020461 316 HFDP 319 (326)
Q Consensus 316 ~~~~ 319 (326)
..+.
T Consensus 452 ~~~~ 455 (456)
T KOG0266|consen 452 KYDF 455 (456)
T ss_pred cCCC
Confidence 8763
No 29
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=7.3e-34 Score=220.18 Aligned_cols=292 Identities=20% Similarity=0.315 Sum_probs=218.7
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC------------C------CeeeeccCcccceEEEEEcCCCC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------------G------ERLGTYRGHNGAVWCCDVSRDSM 65 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~------------~------~~~~~~~~h~~~V~~~~~~~~~~ 65 (326)
..+..|+.++.+.+|||||.++++||.|-+|+|.|++. + -.++++..|..+|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 57889999999999999999999999999999999861 1 24678889999999999999999
Q ss_pred eEEEEeCCCcEEEEEccCCcE---EEEEecCCCcceeeeecCCeEEEEEcC-ccceeceeeeeeeeccCCCCCCCceEEE
Q 020461 66 TLITGSADQTAKLWNVETGAQ---LFTFNFDSPARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGESVLI 141 (326)
Q Consensus 66 ~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (326)
.|++++.|++||++|+..... ...++-..+++++.|+|.+.+++++++ +...+...-..+...... -
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan---------P 256 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN---------P 256 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC---------c
Confidence 999999999999999865322 223334568899999998777766654 443332221111111100 1
Q ss_pred eccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (326)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~ 221 (326)
-.+|.+.|+++.+++.++..++|+.||.|++||--+++++.++....+ ...|++..|..+|+++++.+.|..+++|.+.
T Consensus 257 d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~-gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG-GSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC-CceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 136888999999999999999999999999999988999887764322 3679999999999999999999999999999
Q ss_pred CcceEEEEeeccc------eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec-cccccCcceeEE
Q 020461 222 TLELIKTYVTERP------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG-GVKGHFGPINAL 294 (326)
Q Consensus 222 ~~~~~~~~~~~~~------~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v 294 (326)
++.++..+..... .....|+-..+. ++...+....+.+||.|... .+. .-.||++.+..+
T Consensus 336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdy-Vl~pDEas~slcsWdaRtad------------r~~l~slgHn~a~R~i 402 (430)
T KOG0640|consen 336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDY-VLFPDEASNSLCSWDARTAD------------RVALLSLGHNGAVRWI 402 (430)
T ss_pred CCceEEEEecCCcccchhhhhhhhhcCccce-EEccccccCceeeccccchh------------hhhhcccCCCCCceEE
Confidence 9999999864321 111223222222 23333333344455544422 111 125899999999
Q ss_pred EECCCCceEEeecCCCcEEEeecC
Q 020461 295 AFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 295 ~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
.=||.+..|.|||.|-.+|+|-=.
T Consensus 403 ~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 403 VHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred EeCCCCCceeeecccceeeeeeec
Confidence 999999999999999999999543
No 30
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5e-32 Score=208.22 Aligned_cols=253 Identities=24% Similarity=0.377 Sum_probs=195.8
Q ss_pred eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecC-CCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461 46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHV 124 (326)
Q Consensus 46 ~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
+++++|.+.|.++.|++|+++++++|.||.+.+||.-+......+..+ .-+..+.++|...++++++ +++...+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGG-----LdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGG-----LDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecC-----cCceeEE
Confidence 678999999999999999999999999999999998776555555443 2355677888887777654 2222333
Q ss_pred eeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CC
Q 020461 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DG 203 (326)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~ 203 (326)
..+..............+.+|.+.+.++.|-+ ...|+|++.|.+..+||+++++....+ .+|.+.|.+++++| ++
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f---~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVF---HGHTGDVMSLSLSPSDG 199 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEe---cCCcccEEEEecCCCCC
Confidence 33332111222234456889999999999988 567899999999999999999887765 48999999999999 99
Q ss_pred CeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec
Q 020461 204 SHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG 282 (326)
Q Consensus 204 ~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 282 (326)
+.+++|+.|++.++||+|.+.++++|. ++..++++.|.|++..++.+. +|+ ....+|.|... ++..|..
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS-DD~-tcRlyDlRaD~-~~a~ys~------- 269 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS-DDA-TCRLYDLRADQ-ELAVYSH------- 269 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC-CCc-eeEEEeecCCc-EEeeecc-------
Confidence 999999999999999999999999997 567899999999998766543 333 34455665533 2222221
Q ss_pred cccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 283 GVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 283 ~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
..-..+|++++||..|++|.+|-.|.++.+|+.--
T Consensus 270 --~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 270 --DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK 304 (343)
T ss_pred --CcccCCceeEEEcccccEEEeeecCCceeEeeccc
Confidence 11235799999999999999999999999998643
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.1e-33 Score=236.95 Aligned_cols=255 Identities=22% Similarity=0.329 Sum_probs=214.3
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC----CeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKL 78 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~----~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~ 78 (326)
.+++||++.|.+++...+|-+|+|||.|.++++|.++++ .++....+|++.|.+++++..+ .+|+++|.|+++|+
T Consensus 359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 578999999999997777899999999999999977544 3456678999999999997654 48999999999999
Q ss_pred EEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (326)
Q Consensus 79 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (326)
|++...+.... + +.. ....+...|...|++++++|+.
T Consensus 439 W~l~~s~~~~~-----~-----------~~~---------------------------~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 439 WDLPKSKETAF-----P-----------IVL---------------------------TCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred ecCCCcccccc-----c-----------cee---------------------------hhhHHHHhhcccccceEecCCC
Confidence 99875322100 0 000 0111235688899999999999
Q ss_pred cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEE
Q 020461 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA 237 (326)
Q Consensus 159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~ 237 (326)
+.|+|||.|.+.+||++++.+....+ .||...|.+|.|++..+.++|+|.|++||||.+.++.|++++. +...+--
T Consensus 476 kLiAT~SqDktaKiW~le~~~l~~vL---sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlr 552 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQLRLLGVL---SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLR 552 (775)
T ss_pred ceEEecccccceeeecccCceEEEEe---eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEe
Confidence 99999999999999999977666655 5899999999999999999999999999999999999999998 5667888
Q ss_pred EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
+.|-..+..++.++.++ .+++|+..+.+....+.+|+..|++++-+|...+++||+.||.|.+|.=
T Consensus 553 a~F~~~~~qliS~~adG--------------liKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 553 ASFIRNGKQLISAGADG--------------LIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred eeeeeCCcEEEeccCCC--------------cEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 88988888888876544 4678888888888889999999999999999999999999999999964
Q ss_pred C
Q 020461 318 D 318 (326)
Q Consensus 318 ~ 318 (326)
.
T Consensus 619 ~ 619 (775)
T KOG0319|consen 619 V 619 (775)
T ss_pred C
Confidence 3
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-31 Score=203.34 Aligned_cols=246 Identities=18% Similarity=0.305 Sum_probs=198.3
Q ss_pred ceeeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCC---Ceeeec-cCcccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461 3 PILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNG---ERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAK 77 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~---~~~~~~-~~h~~~V~~~~~~~~~~~l~s~~~d~~i~ 77 (326)
...+.+|++.+..++|+|- |.+|||||.|..||||+...+ .+...+ .+|+..|.+++|+|.|++|++||.|.++-
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 3678899999999999998 889999999999999998753 333344 36999999999999999999999999999
Q ss_pred EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
+|--..++ -+.+.+++||.+.|.+++|+++
T Consensus 87 Iw~k~~~e--------------------------------------------------fecv~~lEGHEnEVK~Vaws~s 116 (312)
T KOG0645|consen 87 IWKKEDGE--------------------------------------------------FECVATLEGHENEVKCVAWSAS 116 (312)
T ss_pred EeecCCCc--------------------------------------------------eeEEeeeeccccceeEEEEcCC
Confidence 99643321 1345678899999999999999
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC---CcceEEEEee-cc
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR---TLELIKTYVT-ER 233 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~-~~ 233 (326)
|++|++++.|..|-||.+.....+.......+|...|..+.|+|...+|+++|+|.+|++|+-. .-++++++.. ..
T Consensus 117 G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~ 196 (312)
T KOG0645|consen 117 GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN 196 (312)
T ss_pred CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc
Confidence 9999999999999999987655554455567899999999999999999999999999999866 3467777753 44
Q ss_pred ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461 234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 313 (326)
Q Consensus 234 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~ 313 (326)
.+-+++|++.|+.++.+..+... ++|.... .....|.+++..++|. ...+||++.|+.|+
T Consensus 197 TVW~~~F~~~G~rl~s~sdD~tv--------------~Iw~~~~----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~ 256 (312)
T KOG0645|consen 197 TVWSLAFDNIGSRLVSCSDDGTV--------------SIWRLYT----DLSGMHSRALYDVPWD--NGVIASGGGDDAIR 256 (312)
T ss_pred eEEEEEecCCCceEEEecCCcce--------------Eeeeecc----CcchhcccceEeeeec--ccceEeccCCCEEE
Confidence 79999999999888776543322 2222111 1123477899999998 67899999999999
Q ss_pred EeecC
Q 020461 314 LHHFD 318 (326)
Q Consensus 314 l~~~~ 318 (326)
||.-.
T Consensus 257 lf~~s 261 (312)
T KOG0645|consen 257 LFKES 261 (312)
T ss_pred EEEec
Confidence 98654
No 33
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-32 Score=229.69 Aligned_cols=244 Identities=23% Similarity=0.333 Sum_probs=211.1
Q ss_pred cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
++..|+++.|+++|.+|+.|..+|.|.|||.++.+.+..+.+ |.+.|.+++|. +..+.+|+.|+.|..+|++..+..
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 478899999999999999999999999999999999999999 99999999997 567899999999999998754321
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 167 (326)
. ..+.+|...|--+.|++++.++++|++|
T Consensus 294 ~---------------------------------------------------~~~~~H~qeVCgLkws~d~~~lASGgnD 322 (484)
T KOG0305|consen 294 V---------------------------------------------------STLQGHRQEVCGLKWSPDGNQLASGGND 322 (484)
T ss_pred h---------------------------------------------------hhhhcccceeeeeEECCCCCeeccCCCc
Confidence 0 0246788888899999999999999999
Q ss_pred CcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEe--CCCeEEEeecCCcceEEEEeeccceEEEEeCCCC
Q 020461 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGS--LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244 (326)
Q Consensus 168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~ 244 (326)
+.+.|||..+.+....+ ..|.+.|.+++|+|- ...||+|+ .|+.|++||..+++.+........|..+.|++..
T Consensus 323 N~~~Iwd~~~~~p~~~~---~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 323 NVVFIWDGLSPEPKFTF---TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKY 399 (484)
T ss_pred cceEeccCCCccccEEE---eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCC
Confidence 99999999665554444 479999999999994 55777764 6999999999999999999988999999999999
Q ss_pred CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
+.++++.|.... .+.+|.......+..+.+|...|..+++||||..+++|+.|.++|+|++-++
T Consensus 400 kEi~sthG~s~n------------~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 400 KELLSTHGYSEN------------QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CEEEEecCCCCC------------cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 998888775432 4556666667778889999999999999999999999999999999998764
No 34
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-32 Score=235.78 Aligned_cols=241 Identities=22% Similarity=0.394 Sum_probs=186.1
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCC----------------------------------------------
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN---------------------------------------------- 41 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~---------------------------------------------- 41 (326)
.|+++|.++.||+||+|||+||.|+.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7999999999999999999999999999997654
Q ss_pred --------------CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeE
Q 020461 42 --------------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKL 107 (326)
Q Consensus 42 --------------~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (326)
.+.+..|+||.+.|..|+||. .++|+++|.|+|||||++...+++..|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~---------------- 407 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS---------------- 407 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe----------------
Confidence 011223579999999999986 4689999999999999998877776553
Q ss_pred EEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC-CcEEEEeeCCCcEEEEECCCCcccccccc
Q 020461 108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDK 186 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 186 (326)
|..-|+|++|+|. .++|++|+-|+.||||++...+...-.
T Consensus 408 -------------------------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~-- 448 (712)
T KOG0283|consen 408 -------------------------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN-- 448 (712)
T ss_pred -------------------------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh--
Confidence 4566889999994 579999999999999999876544321
Q ss_pred ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee---------ccceEEEEeCCCCCe-eEEecCCCcc
Q 020461 187 ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---------ERPVNAVTMSPLLDH-VVLGGGQDAS 256 (326)
Q Consensus 187 ~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~s~~~~~-~~~~~~~~~~ 256 (326)
.-...|++++|.|||++.+.|+.+|.+++|+.+..+....+.. ...|.++.+.|.... ++++. .
T Consensus 449 --Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-n--- 522 (712)
T KOG0283|consen 449 --DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-N--- 522 (712)
T ss_pred --hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec-C---
Confidence 2347799999999999999999999999999988777666532 235888998876554 33332 2
Q ss_pred eeEeecccCceeeeEeecccceeeeccccccCcc--eeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP--INALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
|. .+++++......+..++|+... =..-.|+.||++++++++|..|.+|++++.
T Consensus 523 -----DS-----rIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 523 -----DS-----RIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred -----CC-----ceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 22 2444554333334445544322 245788999999999999999999998653
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.2e-31 Score=216.49 Aligned_cols=289 Identities=21% Similarity=0.279 Sum_probs=212.1
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcCCCCeEEEEeCC----CcEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAK 77 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d----~~i~ 77 (326)
..+..|..+++-+.|||+|-|+++|...|+||||+....+ +..+|+--.++|..++|+.|++++++.++- |.+.
T Consensus 53 ~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F 132 (603)
T KOG0318|consen 53 DIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVF 132 (603)
T ss_pred eeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEE
Confidence 4567899999999999999999999999999999986544 345677789999999999999998877743 4566
Q ss_pred EEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 78 LWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 78 ~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
+||.. ..+-.+. +...++++++.+...+-++....- ..+.+..-. .-+--...+.|..-|+++.|+|
T Consensus 133 ~~DSG--~SvGei~GhSr~ins~~~KpsRPfRi~T~sdD----n~v~ffeGP------PFKFk~s~r~HskFV~~VRysP 200 (603)
T KOG0318|consen 133 LWDSG--NSVGEITGHSRRINSVDFKPSRPFRIATGSDD----NTVAFFEGP------PFKFKSSFREHSKFVNCVRYSP 200 (603)
T ss_pred EecCC--CccceeeccceeEeeeeccCCCceEEEeccCC----CeEEEeeCC------CeeeeecccccccceeeEEECC
Confidence 77753 3222222 223345555555443332221110 000110000 0011234567888999999999
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccc--
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP-- 234 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-- 234 (326)
+|..|++++.||.|.+||=++++.+..+....+|.+.|.++.|+||+..++|+|.|.++||||+.+.++++++.....
T Consensus 201 DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~ 280 (603)
T KOG0318|consen 201 DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE 280 (603)
T ss_pred CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh
Confidence 999999999999999999999999988887889999999999999999999999999999999999999999875433
Q ss_pred ---eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCc
Q 020461 235 ---VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY 311 (326)
Q Consensus 235 ---~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~ 311 (326)
+.++ |. .+++++..-.+ .+.+++.........+.||+..|++++.+||+++|.+||.||.
T Consensus 281 dqqvG~l-Wq--kd~lItVSl~G--------------~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 281 DQQVGCL-WQ--KDHLITVSLSG--------------TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred ceEEEEE-Ee--CCeEEEEEcCc--------------EEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence 2232 32 23333321111 2334444445566778999999999999999999999999999
Q ss_pred EEEeecCCCc
Q 020461 312 VRLHHFDPDY 321 (326)
Q Consensus 312 i~l~~~~~~~ 321 (326)
|.=|+....+
T Consensus 344 I~~W~~~~g~ 353 (603)
T KOG0318|consen 344 INSWDSGSGT 353 (603)
T ss_pred EEEEecCCcc
Confidence 9999876544
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=221.03 Aligned_cols=234 Identities=21% Similarity=0.421 Sum_probs=189.8
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 89 (326)
.+.|+|++|. ...+++|..|.+|+|||.++-.+.+.+.||++.|.|+.| +.+.+++||.|.+|++||.++++++..
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhH
Confidence 3678999875 457999999999999999999999999999999999988 466999999999999999999876543
Q ss_pred EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCc
Q 020461 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~ 169 (326)
+ -+|...|..+.|+ +.++++++.|.+
T Consensus 273 l----------------------------------------------------ihHceaVLhlrf~--ng~mvtcSkDrs 298 (499)
T KOG0281|consen 273 L----------------------------------------------------IHHCEAVLHLRFS--NGYMVTCSKDRS 298 (499)
T ss_pred H----------------------------------------------------hhhcceeEEEEEe--CCEEEEecCCce
Confidence 2 1233444445554 368999999999
Q ss_pred EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEE
Q 020461 170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVL 249 (326)
Q Consensus 170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 249 (326)
|.+||+.+...+.......||.+.|..++|+. ++++++|.|.+|++|++.++++++++... -.+++....-+.+++
T Consensus 299 iaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gH--kRGIAClQYr~rlvV 374 (499)
T KOG0281|consen 299 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGH--KRGIACLQYRDRLVV 374 (499)
T ss_pred eEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcc--cccceehhccCeEEE
Confidence 99999987665444445679999999999865 49999999999999999999999988533 223333334456777
Q ss_pred ecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 250 GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 250 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
+|+.|. .+++|+...+..+..+.||.+-|.++.|+ .+.+++|+.||+|++|++...
T Consensus 375 SGSSDn-------------tIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 375 SGSSDN-------------TIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ecCCCc-------------eEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccc
Confidence 776664 46778887788888899999999999995 788999999999999998653
No 37
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.7e-32 Score=220.11 Aligned_cols=287 Identities=20% Similarity=0.267 Sum_probs=215.5
Q ss_pred eeeeecCCceeEEEEccCCC-EEEeecCCCCeEEEecCCC----Ceeeecc------C----cccceEEEEEcCCCCeEE
Q 020461 4 ILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNG----ERLGTYR------G----HNGAVWCCDVSRDSMTLI 68 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~----~~~~~~~------~----h~~~V~~~~~~~~~~~l~ 68 (326)
++++ |+.+|.+.+|+|-.. .|++++.|.+.|+|++... .....++ + -+..|++++|+.+|..|+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 4566 999999999999887 8999999999999998741 1111111 1 235799999999999999
Q ss_pred EEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461 69 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (326)
Q Consensus 69 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (326)
+|+.||.+++|+...+.....-++..|+.+++|.-.+. ++..+.+....+ |+. ..+.....+.-|..
T Consensus 252 tG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttil------wd~------~~g~~~q~f~~~s~ 319 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTIL------WDA------HTGTVKQQFEFHSA 319 (524)
T ss_pred EeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEE------Eec------cCceEEEeeeeccC
Confidence 99999999999987655444445678888998885444 444333433322 221 12334444555665
Q ss_pred ceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEE
Q 020461 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (326)
Q Consensus 148 ~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 227 (326)
+-..+.|..+ ..|++++.|+.|+++.+...++..++. +|.++|.++.|.|.|.+|+|+|.|++++||.+....+..
T Consensus 320 ~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~---GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 320 PALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFI---GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred CccceEEecC-ceEeecCCCceEEEEEecCCCcceeee---cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh
Confidence 5455666543 468999999999999998777776654 799999999999999999999999999999988777766
Q ss_pred EEe-eccceEEEEeCCCCC--------eeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC
Q 020461 228 TYV-TERPVNAVTMSPLLD--------HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298 (326)
Q Consensus 228 ~~~-~~~~~~~~~~s~~~~--------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~ 298 (326)
.+. +...+..+.|+|.+. ..+++.+.+. -+++|+...+.+++.+..|+.+|.+++|||
T Consensus 396 ~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds-------------tV~lwdv~~gv~i~~f~kH~~pVysvafS~ 462 (524)
T KOG0273|consen 396 DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS-------------TVKLWDVESGVPIHTLMKHQEPVYSVAFSP 462 (524)
T ss_pred hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC-------------eEEEEEccCCceeEeeccCCCceEEEEecC
Confidence 664 344566777776653 2233333222 356788888888899999999999999999
Q ss_pred CCceEEeecCCCcEEEeecCCC
Q 020461 299 DGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 299 d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
+|+++|+|+.||.|.+|+....
T Consensus 463 ~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred CCcEEEecCCCCeeEeccccch
Confidence 9999999999999999987654
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.4e-32 Score=230.74 Aligned_cols=300 Identities=20% Similarity=0.308 Sum_probs=209.2
Q ss_pred eee-cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCC--eEEEEeCCCcEEEEEcc
Q 020461 6 MKG-HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLWNVE 82 (326)
Q Consensus 6 ~~~-h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~~~d~~i~~wd~~ 82 (326)
.+. |++|+.-++|+|.+.+|++|+.|+.+++||+..+.+.+.|+||.+.|+++.|+|+-. .|++|..|+++++||++
T Consensus 100 wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~ 179 (775)
T KOG0319|consen 100 WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLN 179 (775)
T ss_pred HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcc
Confidence 344 999999999999999999999999999999999999999999999999999999754 58999999999999998
Q ss_pred CCcE-EEEEe-cCCCcceeeeecCC-----------------------------------------------eEEEEEcC
Q 020461 83 TGAQ-LFTFN-FDSPARSVDFAVGD-----------------------------------------------KLAVITTD 113 (326)
Q Consensus 83 ~~~~-~~~~~-~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~ 113 (326)
+... +..+. +.+.+.++.+.+++ .+..++..
T Consensus 180 ~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~ 259 (775)
T KOG0319|consen 180 DKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGS 259 (775)
T ss_pred cCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCC
Confidence 5432 11110 11222222222111 11111110
Q ss_pred cccee-----------------------------------ce--eeeee-----eecc----CC-----------C----
Q 020461 114 PFMEL-----------------------------------NS--AIHVK-----RIAR----DP-----------A---- 132 (326)
Q Consensus 114 ~~~~~-----------------------------------~~--~~~~~-----~~~~----~~-----------~---- 132 (326)
..... .. .+.+. .+.. +. .
T Consensus 260 g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~l 339 (775)
T KOG0319|consen 260 GVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHL 339 (775)
T ss_pred ceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceE
Confidence 00000 00 00000 0000 00 0
Q ss_pred ------------CCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcc-ccccccccCcceeeEEEEE
Q 020461 133 ------------DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAK 199 (326)
Q Consensus 133 ------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~h~~~v~~v~~ 199 (326)
+..+.....+.||...|.++....+|-+|+||+.|.++++|.++.+.. ...+....+|...|.++++
T Consensus 340 aVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~ 419 (775)
T KOG0319|consen 340 AVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG 419 (775)
T ss_pred EEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee
Confidence 001112224668888888888666678999999999999998844322 2233445689999999999
Q ss_pred cCC-CCeEEEEeCCCeEEEeecCCcceEE----------EEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCcee
Q 020461 200 AAD-GSHFLTGSLDKSAKLWDARTLELIK----------TYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 268 (326)
Q Consensus 200 s~~-~~~l~s~s~dg~i~iwd~~~~~~~~----------~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~ 268 (326)
+.. ..+|+++|.|.++++|++...+... ...++..+|+++++|+.. +++++++|..
T Consensus 420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDkt------------ 486 (775)
T KOG0319|consen 420 SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKT------------ 486 (775)
T ss_pred cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccc------------
Confidence 765 4579999999999999987521111 112567899999999855 4555566643
Q ss_pred eeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 269 EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
.++|+.......+.++||...|++|.|+|..+.+||+|.|++|+||+++.
T Consensus 487 -aKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~ 536 (775)
T KOG0319|consen 487 -AKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST 536 (775)
T ss_pred -eeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc
Confidence 45676666677889999999999999999999999999999999999875
No 39
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.4e-32 Score=213.23 Aligned_cols=283 Identities=21% Similarity=0.311 Sum_probs=220.3
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeee--------ccCcccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--------YRGHNGAVWCCDVSRDSMTLITGSADQTAK 77 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~--------~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~ 77 (326)
..|.+..+.|..|||||++|++||-||-|.+||.-+|+.-+. |.-+..+|.|++|+.|.+.+++|+.||.|+
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 445667788999999999999999999999999998876543 345788999999999999999999999999
Q ss_pred EEEccCCcEEEEEe--cCCCcceeeeecCCeEEEEE-cCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461 78 LWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (326)
Q Consensus 78 ~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (326)
+|.+.+|.++..|. +...+.++.|+.++..++.. .+.. .+.....+|+.+..++||.+.|+.+.|
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t------------vRiHGlKSGK~LKEfrGHsSyvn~a~f 356 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQT------------VRIHGLKSGKCLKEFRGHSSYVNEATF 356 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccce------------EEEeccccchhHHHhcCccccccceEE
Confidence 99999999987774 44566777777554433322 1211 111223467788889999999999999
Q ss_pred ecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCcceEEEEeec-
Q 020461 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVTE- 232 (326)
Q Consensus 155 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~- 232 (326)
+++|..+++++.||+|++|+.++.++..++... +...+|.++..-| +...++.+...++++|-+++ |+.++++...
T Consensus 357 t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk 434 (508)
T KOG0275|consen 357 TDDGHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK 434 (508)
T ss_pred cCCCCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC
Confidence 999999999999999999999999998887654 4567788887655 56689999999999999986 6788887643
Q ss_pred ---cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC
Q 020461 233 ---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED 309 (326)
Q Consensus 233 ---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D 309 (326)
...-+.+.+|-|+..++.| +|... +.+... .+..-..+.-|...|-.++-+|..+.+|+=++|
T Consensus 435 REgGdFi~~~lSpkGewiYcig-ED~vl-YCF~~~------------sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsED 500 (508)
T KOG0275|consen 435 REGGDFINAILSPKGEWIYCIG-EDGVL-YCFSVL------------SGKLERTLPVHEKDVIGLTHHPHQNLLASYSED 500 (508)
T ss_pred ccCCceEEEEecCCCcEEEEEc-cCcEE-EEEEee------------cCceeeeeecccccccccccCcccchhhhhccc
Confidence 3566778899999877654 44432 122222 222223345577888899999999999999999
Q ss_pred CcEEEee
Q 020461 310 GYVRLHH 316 (326)
Q Consensus 310 g~i~l~~ 316 (326)
|.+++|.
T Consensus 501 gllKLWk 507 (508)
T KOG0275|consen 501 GLLKLWK 507 (508)
T ss_pred chhhhcC
Confidence 9999994
No 40
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-31 Score=201.90 Aligned_cols=239 Identities=20% Similarity=0.295 Sum_probs=190.5
Q ss_pred CCceeEEEEccC-CCEEEeecCCCCeEEEecCCC-CeeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEEccCCcE
Q 020461 10 ERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQ 86 (326)
Q Consensus 10 ~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~ 86 (326)
.+.+..++|+++ .+.+++|+.||+++|||.... ..++.+++|...|.++.|++- ++.++++|.|++||+|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 466789999987 468899999999999996433 578899999999999999984 55688889999999999865433
Q ss_pred EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEEEEee
Q 020461 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAG 165 (326)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~ 165 (326)
+.+++||.+-|....|+|.- +.+++++
T Consensus 140 ----------------------------------------------------v~Tf~gh~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 140 ----------------------------------------------------VQTFNGHNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred ----------------------------------------------------eEeecCCccEEEEEecCCCCCCeEEEcc
Confidence 33456788889999999964 6889999
Q ss_pred CCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCcc-eEEEEe-eccceEEEEeCC
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLE-LIKTYV-TERPVNAVTMSP 242 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~~~~~~~~~~s~ 242 (326)
.|+++++||++....... ...|..++.++.|+. +...++||+.|+.|+.||+++.. ++..+. ++-.++.+.+||
T Consensus 168 gd~~l~lwdvr~~gk~~~---i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 168 GDGTLRLWDVRSPGKFMS---IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred CCceEEEEEecCCCceeE---EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence 999999999976433322 346888999999986 66789999999999999998753 333332 445799999999
Q ss_pred CCCeeEEecCCCcceeEeecccCceeeeEeecccce-eeeccccccCcceeEEEECC-CCceEEeecCCCcEEEee
Q 020461 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ-EEIGGVKGHFGPINALAFNP-DGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~v~~s~-d~~~lat~s~Dg~i~l~~ 316 (326)
....++++.+.|. ..++|+...+ ..+....-|++-|..+.||+ ++.++|+++.|+.+.||+
T Consensus 245 h~~~lLaSasYDm-------------T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 245 HHASLLASASYDM-------------TVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred chhhHhhhccccc-------------eEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 9888887776554 3466766532 33445667899999999997 677899999999999997
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-31 Score=223.64 Aligned_cols=248 Identities=19% Similarity=0.311 Sum_probs=212.0
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
+.+..|.+.|.++.|+|...+++++--+|.|.|||.++...++.|.-..-||.+..|-+-.+.+++|+.|..||+|+.++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 34556889999999999999999999999999999999999999988888999999998889999999999999999987
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
++.+. .+..|...|.+++.+|..++++|
T Consensus 87 ~ekV~----------------------------------------------------~FeAH~DyIR~iavHPt~P~vLt 114 (794)
T KOG0276|consen 87 GEKVK----------------------------------------------------TFEAHSDYIRSIAVHPTLPYVLT 114 (794)
T ss_pred ceeeE----------------------------------------------------EeeccccceeeeeecCCCCeEEe
Confidence 65443 34567788999999999999999
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeC
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMS 241 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s 241 (326)
+|+|-+|++||-...=... +...||..-|+++++.| |.+.++++|.|++|++|.+.+..+..++. ++.-++|+++-
T Consensus 115 sSDDm~iKlW~we~~wa~~--qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy 192 (794)
T KOG0276|consen 115 SSDDMTIKLWDWENEWACE--QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYY 192 (794)
T ss_pred cCCccEEEEeeccCceeee--eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEec
Confidence 9999999999986532221 22358999999999998 57789999999999999999998888886 45679999987
Q ss_pred CCCCe-eEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 242 PLLDH-VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 242 ~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
+-++. .+++|++|. .+++|+-++...++.+.||...|..+.|+|.-..++|||+||++|||+--
T Consensus 193 ~~gdkpylIsgaDD~-------------tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 193 TGGDKPYLISGADDL-------------TIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred cCCCcceEEecCCCc-------------eEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCc
Confidence 76654 334444442 36778888888899999999999999999999999999999999999854
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-31 Score=233.00 Aligned_cols=246 Identities=21% Similarity=0.382 Sum_probs=203.5
Q ss_pred eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 86 (326)
+.-...+..++|+|...+++++--.|.|.+||..=+.++..|.+|.++|..++|+|...+++|||.|.+|++|+.++.++
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence 33456788999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (326)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 166 (326)
+ ..+.||...|..+.|++.-++|+++|+
T Consensus 86 l----------------------------------------------------ftL~GHlDYVRt~~FHheyPWIlSASD 113 (1202)
T KOG0292|consen 86 L----------------------------------------------------FTLLGHLDYVRTVFFHHEYPWILSASD 113 (1202)
T ss_pred h----------------------------------------------------hhhccccceeEEeeccCCCceEEEccC
Confidence 3 234578888889999999999999999
Q ss_pred CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc-----------------------
Q 020461 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----------------------- 223 (326)
Q Consensus 167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~----------------------- 223 (326)
|.+|+||+..+++++..+ .||..-|+|.+|+|....++++|.|.+||+||+...
T Consensus 114 DQTIrIWNwqsr~~iavl---tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dL 190 (1202)
T KOG0292|consen 114 DQTIRIWNWQSRKCIAVL---TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDL 190 (1202)
T ss_pred CCeEEEEeccCCceEEEE---ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhh
Confidence 999999999999888765 589999999999999999999999999999997421
Q ss_pred ----ceEEEEe---eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE
Q 020461 224 ----ELIKTYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 296 (326)
Q Consensus 224 ----~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 296 (326)
..+-++. +.+-+|.++|+|....+++ |++|.. + .++.|+....-++-.+.||..+|.++-|
T Consensus 191 fg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS-G~DDRq-V----------KlWrmnetKaWEvDtcrgH~nnVssvlf 258 (1202)
T KOG0292|consen 191 FGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS-GADDRQ-V----------KLWRMNETKAWEVDTCRGHYNNVSSVLF 258 (1202)
T ss_pred cCCcCeeeeeeecccccccceEEecCCcceEEe-cCCcce-e----------eEEEeccccceeehhhhcccCCcceEEe
Confidence 1122221 3456899999998765554 444421 1 2222333334456678999999999999
Q ss_pred CCCCceEEeecCCCcEEEeecCC
Q 020461 297 NPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 297 s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
+|....+.+.|+|++||+|++..
T Consensus 259 hp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 259 HPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred cCccceeEecCCCccEEEEeccc
Confidence 99999999999999999999864
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.1e-29 Score=236.10 Aligned_cols=292 Identities=14% Similarity=0.213 Sum_probs=205.4
Q ss_pred eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC----C----eeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEE
Q 020461 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----E----RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAK 77 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~----~----~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~ 77 (326)
..|...|.+++|+|+|++|++|+.|++|+||+.... . .+..+. +...|.+++|++. +.+|++++.|++|+
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 448899999999999999999999999999997532 1 112232 3567899999874 67999999999999
Q ss_pred EEEccCCcEEEEEe-cCCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461 78 LWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (326)
Q Consensus 78 ~wd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (326)
+||+.+++.+..+. +...+.++.+++ +..+++.+.. +..+.+|++.. +..+..+..+ ..+.++.|+
T Consensus 559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~-----Dg~v~iWd~~~------~~~~~~~~~~-~~v~~v~~~ 626 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD-----DGSVKLWSINQ------GVSIGTIKTK-ANICCVQFP 626 (793)
T ss_pred EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-----CCEEEEEECCC------CcEEEEEecC-CCeEEEEEe
Confidence 99999988777664 456678888885 3344333322 23445555432 2344445444 578889995
Q ss_pred -cCCcEEEEeeCCCcEEEEECCCCcc-ccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc------ceEE
Q 020461 156 -PLNRTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL------ELIK 227 (326)
Q Consensus 156 -~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~------~~~~ 227 (326)
+++..|++|+.|+.|++||+++.+. ... ..+|...|.++.|. ++.+|++++.|++|++||++.+ .++.
T Consensus 627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~---~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~ 702 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDLRNPKLPLCT---MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLH 702 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceE---ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence 5688999999999999999987542 222 24799999999997 6789999999999999999753 4555
Q ss_pred EEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec--cccccCcceeEEEECCCCceEE
Q 020461 228 TYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG--GVKGHFGPINALAFNPDGKSFS 304 (326)
Q Consensus 228 ~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~s~d~~~la 304 (326)
.+. +...+++++++|++..+++++ .|+. +..|+...... +.-+......... ....|...|.+++|+|++.+|+
T Consensus 703 ~~~gh~~~i~~v~~s~~~~~lasgs-~D~~-v~iw~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lv 779 (793)
T PLN00181 703 SFMGHTNVKNFVGLSVSDGYIATGS-ETNE-VFVYHKAFPMP-VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLV 779 (793)
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEe-CCCE-EEEEECCCCCc-eEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEE
Confidence 554 345678999999987655554 3432 33344322110 0001100000011 1234667899999999999999
Q ss_pred eecCCCcEEEeecC
Q 020461 305 SGGEDGYVRLHHFD 318 (326)
Q Consensus 305 t~s~Dg~i~l~~~~ 318 (326)
+|+.||.|+||++.
T Consensus 780 a~~~dG~I~i~~~~ 793 (793)
T PLN00181 780 AANSTGNIKILEMV 793 (793)
T ss_pred EecCCCcEEEEecC
Confidence 99999999999863
No 44
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=9.4e-31 Score=207.76 Aligned_cols=270 Identities=24% Similarity=0.421 Sum_probs=206.1
Q ss_pred eeeeecCCceeEEEEccCC---CEEEeecCCCCeEEEecCCCCe----eeeccCcccceEEEEEcCCCCeEEEEeCCCcE
Q 020461 4 ILMKGHERPLTYLKYNKDG---DLLFSCAKDHTPTVWFADNGER----LGTYRGHNGAVWCCDVSRDSMTLITGSADQTA 76 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~---~~l~s~~~d~~v~iw~~~~~~~----~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i 76 (326)
.+..||.++|..+++-... ..++++|.|.++++|..+.++. +...+||.+.|-+++..+++..+++||.|.++
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l 217 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML 217 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccccee
Confidence 4678999999977766433 3599999999999998887754 34456999999999999999999999999999
Q ss_pred EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
++|+..+......-... .. +-....+........++..+.||..+|.++.|++
T Consensus 218 kiWs~~~~~~~~~E~~s--------------------------~~-rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 218 KIWSVETDEEDELESSS--------------------------NR-RRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred eecccCCCccccccccc--------------------------hh-hhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 99994332211000000 00 0000011122234567888999999999999999
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc--eE-EEEe-ec
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LI-KTYV-TE 232 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~-~~~~-~~ 232 (326)
...+++++.|.+|+.||+.+++...++. -.....++.++|...+|++|+.|..|++||+|++. .+ +++. +.
T Consensus 271 -~~v~yS~SwDHTIk~WDletg~~~~~~~----~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~ 345 (423)
T KOG0313|consen 271 -ATVIYSVSWDHTIKVWDLETGGLKSTLT----TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK 345 (423)
T ss_pred -CCceEeecccceEEEEEeecccceeeee----cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecch
Confidence 6789999999999999999998876653 34678999999999999999999999999999753 22 2232 44
Q ss_pred cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee-eeccccccCcceeEEEECCCCceEEeecCCCc
Q 020461 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE-EIGGVKGHFGPINALAFNPDGKSFSSGGEDGY 311 (326)
Q Consensus 233 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~ 311 (326)
.-+.++.++|.....+++++.|+. .++||..... ++-.+.+|...|.++.|+ ++.++++|+.|.+
T Consensus 346 nwVssvkwsp~~~~~~~S~S~D~t-------------~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~ 411 (423)
T KOG0313|consen 346 NWVSSVKWSPTNEFQLVSGSYDNT-------------VKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNK 411 (423)
T ss_pred hhhhheecCCCCceEEEEEecCCe-------------EEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcce
Confidence 578999999999998888876653 3445544333 455678999999999997 5889999999999
Q ss_pred EEEeecCC
Q 020461 312 VRLHHFDP 319 (326)
Q Consensus 312 i~l~~~~~ 319 (326)
|+++.-.+
T Consensus 412 l~i~~~~~ 419 (423)
T KOG0313|consen 412 LRIFKGSP 419 (423)
T ss_pred EEEecccc
Confidence 99987665
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.9e-32 Score=214.42 Aligned_cols=239 Identities=23% Similarity=0.404 Sum_probs=192.0
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..|.||.+.|.|++|.. +.|++||+|.+|++||.++|+++.++-+|...|..+.|+ ..+++|+|.|.++++||+..
T Consensus 231 ~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~s 306 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMAS 306 (499)
T ss_pred HhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccC
Confidence 35789999999998864 599999999999999999999999999999999999997 45899999999999999864
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
...+ ....++.||...|+.+.|+. +++++
T Consensus 307 ps~i-------------------------------------------------t~rrVLvGHrAaVNvVdfd~--kyIVs 335 (499)
T KOG0281|consen 307 PTDI-------------------------------------------------TLRRVLVGHRAAVNVVDFDD--KYIVS 335 (499)
T ss_pred chHH-------------------------------------------------HHHHHHhhhhhheeeecccc--ceEEE
Confidence 3210 12234568888888888865 59999
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCC
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP 242 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~ 242 (326)
++.|.+|++|++.+++.++++ .+|+..|-|+.+ .+.++++||.|.+|++||+..|.+++.+. ++..+.++-|..
T Consensus 336 ASgDRTikvW~~st~efvRtl---~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~ 410 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTL---NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 410 (499)
T ss_pred ecCCceEEEEeccceeeehhh---hcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC
Confidence 999999999999999888766 478888888875 57799999999999999999999988875 456788888864
Q ss_pred CCCeeEEecCCCcceeEeecccCceeeeEeeccccee---------eeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE---------EIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 313 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---------~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~ 313 (326)
+ -+++|+.|+ .+++|+..... .+..+..|++.|..+.| |.-.+++++.|.+|-
T Consensus 411 --k-rIVSGaYDG-------------kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtIL 472 (499)
T KOG0281|consen 411 --K-RIVSGAYDG-------------KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTIL 472 (499)
T ss_pred --c-eeeeccccc-------------eEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEE
Confidence 2 344555554 24455543221 23345679999999999 578899999999999
Q ss_pred EeecCCC
Q 020461 314 LHHFDPD 320 (326)
Q Consensus 314 l~~~~~~ 320 (326)
+|+|.+.
T Consensus 473 iWdFl~~ 479 (499)
T KOG0281|consen 473 IWDFLNG 479 (499)
T ss_pred EEEcCCC
Confidence 9999864
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=8.2e-31 Score=206.79 Aligned_cols=254 Identities=23% Similarity=0.422 Sum_probs=203.7
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..|.||-..|..+++|+--.||++|+.|+.|+-||++..+.++.+.||-..|.|++.+|.-+.|++|+.|.++|+||+++
T Consensus 187 ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 187 LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT 266 (460)
T ss_pred EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
.. .+.++.||.++|.++.+.|....+++
T Consensus 267 r~----------------------------------------------------~V~~l~GH~~~V~~V~~~~~dpqvit 294 (460)
T KOG0285|consen 267 RA----------------------------------------------------SVHVLSGHTNPVASVMCQPTDPQVIT 294 (460)
T ss_pred cc----------------------------------------------------eEEEecCCCCcceeEEeecCCCceEE
Confidence 43 34456789999999999999999999
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCC
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP 242 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~ 242 (326)
|+.|++|++||++.++.+.++. .|...+.+++.+|....+|+++.| .|+-|++-.++.++.+. +...+++++...
T Consensus 295 ~S~D~tvrlWDl~agkt~~tlt---~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ns 370 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMITLT---HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNS 370 (460)
T ss_pred ecCCceEEEeeeccCceeEeee---cccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeecc
Confidence 9999999999999998776553 688999999999999999999987 58999998888777753 234566666654
Q ss_pred CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
+ .++++|++. ..+..+|.+.+-.-.+. .+....+.+ .-.+.|.+.+|...|..|+||..|.+|++|.-|.+
T Consensus 371 D--~v~~~G~dn-g~~~fwdwksg~nyQ~~---~t~vqpGSl-~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 371 D--GVLVSGGDN-GSIMFWDWKSGHNYQRG---QTIVQPGSL-ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred C--ceEEEcCCc-eEEEEEecCcCcccccc---cccccCCcc-ccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 4 456655543 34445555443221111 000011111 12356899999999999999999999999987653
No 47
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=2.2e-29 Score=219.97 Aligned_cols=255 Identities=20% Similarity=0.263 Sum_probs=188.4
Q ss_pred cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCee-------------eeccCcccceEEEEEcC-CCCeEEEEeCCC
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-------------GTYRGHNGAVWCCDVSR-DSMTLITGSADQ 74 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~-------------~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~ 74 (326)
|-..|....+++++..+++++.+.....|+...+..+ ..+.+|.+.|++++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3455666777888777888888888888876544322 13678999999999999 788999999999
Q ss_pred cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (326)
Q Consensus 75 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (326)
+|++||+.++.... .....+..+.+|...|.++.|
T Consensus 99 tIkIWdi~~~~~~~---------------------------------------------~~~~~l~~L~gH~~~V~~l~f 133 (493)
T PTZ00421 99 TIMGWGIPEEGLTQ---------------------------------------------NISDPIVHLQGHTKKVGIVSF 133 (493)
T ss_pred EEEEEecCCCcccc---------------------------------------------ccCcceEEecCCCCcEEEEEe
Confidence 99999987542110 001234556789999999999
Q ss_pred ecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc
Q 020461 155 GPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (326)
Q Consensus 155 ~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 233 (326)
+|.+ .+|++++.|++|+|||+++++....+ .+|...|.+++|+|+|.+|++++.|++|++||+++++.+.++....
T Consensus 134 ~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l---~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~ 210 (493)
T PTZ00421 134 HPSAMNVLASAGADMVVNVWDVERGKAVEVI---KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210 (493)
T ss_pred CcCCCCEEEEEeCCCEEEEEECCCCeEEEEE---cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC
Confidence 9986 68999999999999999988765544 4688899999999999999999999999999999999887765322
Q ss_pred --ceEEEEeCCCCCeeEEecCCC--cceeEeecccCceeeeEeecccceeeecccc-ccCcceeEEEECCCCceEEeecC
Q 020461 234 --PVNAVTMSPLLDHVVLGGGQD--ASAVTTTDHRAGKFEAKFFDKILQEEIGGVK-GHFGPINALAFNPDGKSFSSGGE 308 (326)
Q Consensus 234 --~~~~~~~s~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~d~~~lat~s~ 308 (326)
....+.|.+..+.+++++... ...+..||.+... ..+.... .+...+....|++|+.+|++|+.
T Consensus 211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~-----------~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA-----------SPYSTVDLDQSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-----------CceeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence 244567888777776655321 1233444433211 1111111 12345666789999999998874
Q ss_pred -CCcEEEeecCCCce
Q 020461 309 -DGYVRLHHFDPDYF 322 (326)
Q Consensus 309 -Dg~i~l~~~~~~~~ 322 (326)
|+.|++|+++...+
T Consensus 280 gDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 280 GEGNIRCFELMNERL 294 (493)
T ss_pred CCCeEEEEEeeCCce
Confidence 99999999987643
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1e-29 Score=217.76 Aligned_cols=294 Identities=20% Similarity=0.267 Sum_probs=230.2
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+.||...|..++||.+...++||+. ++++||+..+.++++++..- .+.+..|.|.++++++|...|.+.+||+..
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 678899999999999999888887755 69999999999999998643 788899999999999999999999999988
Q ss_pred CcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCC-CCCCceEEEec-----cCccceeEEEEec
Q 020461 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA-DQGGESVLILK-----GPQGRINRAVWGP 156 (326)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~~~~~ 156 (326)
...+...+ +++.+.++...+++...+.++. +..+.+|....... ..+...+..++ .-...|.++.+||
T Consensus 444 ~~l~Eti~AHdgaIWsi~~~pD~~g~vT~sa-----DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 444 ASLVETIRAHDGAIWSISLSPDNKGFVTGSA-----DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred hhhhhhhhccccceeeeeecCCCCceEEecC-----CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 76655443 5667777887777665444332 22333343221111 01111111111 1235688999999
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccce
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPV 235 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~ 235 (326)
++++++.+--|.++++|-+.+-+... ...||.-+|.|+++|||++.++|||.|.+|++|-++-|+|-+++. +...+
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlKFfl---sLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSv 595 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLKFFL---SLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSV 595 (888)
T ss_pred CCcEEEEEeccCeEEEEEecceeeee---eecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCce
Confidence 99999999999999999988765443 346999999999999999999999999999999999999988875 56789
Q ss_pred EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461 236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH 315 (326)
Q Consensus 236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~ 315 (326)
.++.|-|....++++| .|+ .++.|+...-+.+..+.+|...|++++-+|+|.+++++|.|.+||+|
T Consensus 596 m~V~F~P~~~~FFt~g-KD~-------------kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 596 MSVQFLPKTHLFFTCG-KDG-------------KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLW 661 (888)
T ss_pred eEEEEcccceeEEEec-Ccc-------------eEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEee
Confidence 9999999655555554 333 46778776677788899999999999999999999999999999999
Q ss_pred ecCCCce
Q 020461 316 HFDPDYF 322 (326)
Q Consensus 316 ~~~~~~~ 322 (326)
.-..+..
T Consensus 662 E~tde~~ 668 (888)
T KOG0306|consen 662 ERTDEIL 668 (888)
T ss_pred eccCcce
Confidence 8877543
No 49
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-30 Score=204.37 Aligned_cols=233 Identities=23% Similarity=0.361 Sum_probs=190.5
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC-CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
..|+||.+++..++|+..|++|++||.|-.+++||..+ .++++.+.+|...|.++.|-|-|.+++|++.|.+|+.|++.
T Consensus 144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~ 223 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD 223 (406)
T ss_pred hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence 35899999999999999999999999999999999877 56788889999999999999999999999999999999999
Q ss_pred CCcEEEEEecCC-CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC----
Q 020461 83 TGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL---- 157 (326)
Q Consensus 83 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---- 157 (326)
++.++..+..+. -++.+....+..+.+.+.. +..+.+|..+ .+.+...+++|+-+|-+++|-|.
T Consensus 224 tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~-----dqtl~vW~~~------t~~~k~~lR~hEh~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 224 TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN-----DQTLRVWVVA------TKQCKAELREHEHPVECIAWAPESSYP 292 (406)
T ss_pred cceeEEeccCchHhEEEEEecCCeeEEEecCC-----CceEEEEEec------cchhhhhhhccccceEEEEecccccCc
Confidence 999998886543 2444444444444443322 2344555443 23344567788888888887642
Q ss_pred -----------CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE
Q 020461 158 -----------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (326)
Q Consensus 158 -----------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 226 (326)
++++.+++.|++|++||+.++.++.++ .+|..-|..++|+|.|+||+++..|+++++||+++++|.
T Consensus 293 ~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL---~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 293 SISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL---VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred chhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE---ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence 258899999999999999999888765 589999999999999999999999999999999999999
Q ss_pred EEEe-eccceEEEEeCCCCCeeEEe
Q 020461 227 KTYV-TERPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 227 ~~~~-~~~~~~~~~~s~~~~~~~~~ 250 (326)
..+. ++.-++++.|+.....++.+
T Consensus 370 k~~~ah~hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 370 KTLEAHEHFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred eccCCCcceeEEEecCCCCceEEec
Confidence 8886 45568999999887755544
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=3.5e-30 Score=198.74 Aligned_cols=209 Identities=30% Similarity=0.457 Sum_probs=179.4
Q ss_pred eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeee
Q 020461 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 126 (326)
Q Consensus 47 ~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (326)
.+.+|.+.|+.+.|+|+|.+|+|||.|..|-+|+....
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd------------------------------------------ 79 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD------------------------------------------ 79 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc------------------------------------------
Confidence 45799999999999999999999999999999996421
Q ss_pred eccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe-
Q 020461 127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH- 205 (326)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~- 205 (326)
.+...++++|.+.|..+.|.+++..++++|.|.+|+.||.++|+..+.. .+|...|.+++.+.-|..
T Consensus 80 ---------ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~---k~h~~~vNs~~p~rrg~~l 147 (338)
T KOG0265|consen 80 ---------CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKH---KGHTSFVNSLDPSRRGPQL 147 (338)
T ss_pred ---------ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehh---ccccceeeecCccccCCeE
Confidence 1234456799999999999999999999999999999999999987654 478899999986666655
Q ss_pred EEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccc
Q 020461 206 FLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK 285 (326)
Q Consensus 206 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 285 (326)
+.||+.|+++++||+|+.++++++....++.+++|...++.+++++-+. .++.|+.........+.
T Consensus 148 v~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn--------------~ikvWd~r~~d~~~~ls 213 (338)
T KOG0265|consen 148 VCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN--------------DIKVWDLRKNDGLYTLS 213 (338)
T ss_pred EEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC--------------ceeeeccccCcceEEee
Confidence 5578889999999999999999998888999999999999988876543 35667765566677789
Q ss_pred ccCcceeEEEECCCCceEEeecCCCcEEEeecCCCcee
Q 020461 286 GHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN 323 (326)
Q Consensus 286 ~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~ 323 (326)
||..+|+.+..+|+|.++.+-+.|.++++|+++|--..
T Consensus 214 Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 214 GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred cccCceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 99999999999999999999999999999999986443
No 51
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=4.5e-30 Score=203.94 Aligned_cols=250 Identities=22% Similarity=0.364 Sum_probs=195.1
Q ss_pred cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC---CCeEEEEeCCCcEEEEEccCCc
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
|++=|.++... +++|++|+-||++|+|+. .|+.+..+.||.++|..++|.-. ...|+++|.|.++++|-++.++
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 55555555555 789999999999999996 58888899999999998887432 2369999999999999887665
Q ss_pred EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 165 (326)
.... .+...+||...|.++...+++..+++|+
T Consensus 181 ~~~~------------------------------------------------~~~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 181 NKVK------------------------------------------------ALKVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred hhhh------------------------------------------------HHhHhcccccceeEEEecCCCCeEEeec
Confidence 3211 1222348999999999999999999999
Q ss_pred CCCcEEEEECCCC-----ccc-----------------cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc
Q 020461 166 EDAIVRIWDTETG-----KLL-----------------KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (326)
Q Consensus 166 ~d~~i~~wd~~~~-----~~~-----------------~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~ 223 (326)
.|.+|++|+..+- +.. ..+....||..+|.++.|++ ...+.+++.|.+|+.||+.++
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence 9999999993210 000 00112368999999999998 668999999999999999999
Q ss_pred ceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc-e
Q 020461 224 ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-S 302 (326)
Q Consensus 224 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~ 302 (326)
.++.++......+++..+|... ++++|+.|.. +..+|.|.+.-.+- ...+.||...|.++.|+|... +
T Consensus 292 ~~~~~~~~~ksl~~i~~~~~~~-Ll~~gssdr~-irl~DPR~~~gs~v---------~~s~~gH~nwVssvkwsp~~~~~ 360 (423)
T KOG0313|consen 292 GLKSTLTTNKSLNCISYSPLSK-LLASGSSDRH-IRLWDPRTGDGSVV---------SQSLIGHKNWVSSVKWSPTNEFQ 360 (423)
T ss_pred cceeeeecCcceeEeecccccc-eeeecCCCCc-eeecCCCCCCCcee---------EEeeecchhhhhheecCCCCceE
Confidence 9999999889999999999554 5555555543 45667666543221 234679999999999999665 5
Q ss_pred EEeecCCCcEEEeecCCCc
Q 020461 303 FSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 303 lat~s~Dg~i~l~~~~~~~ 321 (326)
|++||.|+++++|+++...
T Consensus 361 ~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 361 LVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred EEEEecCCeEEEEEeccCC
Confidence 9999999999999998754
No 52
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=8.2e-29 Score=187.75 Aligned_cols=286 Identities=18% Similarity=0.247 Sum_probs=213.4
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeee--eccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG--TYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWN 80 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~--~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd 80 (326)
+-+++|.+.+..++|+-+|..|++++.|+++++|+++...... ..++|.+.|-.++|+|. ...|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 3467899999999999999999999999999999998775544 34789999999999874 56899999999999999
Q ss_pred ccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (326)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (326)
+..++++...........+.++|.+..+++....- .+...+... ..+..-..-.-.++.+.|+-.+.+
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD-----~it~id~r~-------~~~~~~~~~~~e~ne~~w~~~nd~ 161 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDD-----RITFIDART-------YKIVNEEQFKFEVNEISWNNSNDL 161 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcc-----cEEEEEecc-------cceeehhcccceeeeeeecCCCCE
Confidence 99999998887777777788887666555543321 111111100 011111112234667788877777
Q ss_pred EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEE
Q 020461 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT 239 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~ 239 (326)
|+--...|+|.|.....-+.+..+ .+|.....|+.|+|+|++||+|+.|-.+-+||++..-|++.+. .+-+++.++
T Consensus 162 Fflt~GlG~v~ILsypsLkpv~si---~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlS 238 (313)
T KOG1407|consen 162 FFLTNGLGCVEILSYPSLKPVQSI---KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLS 238 (313)
T ss_pred EEEecCCceEEEEecccccccccc---ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEE
Confidence 776677899999887755554444 5799999999999999999999999999999999988888885 567899999
Q ss_pred eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC---------C
Q 020461 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED---------G 310 (326)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D---------g 310 (326)
|+-++..++.+ ++|- + +.+....++..+..++ +.++...|+|+|...+||-++.| |
T Consensus 239 FS~dg~~lASa-SEDh-~------------IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag 303 (313)
T KOG1407|consen 239 FSHDGRMLASA-SEDH-F------------IDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAG 303 (313)
T ss_pred eccCcceeecc-Cccc-e------------EEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccc
Confidence 99998877654 3332 2 2223333444444443 67889999999999999888764 6
Q ss_pred cEEEeecCC
Q 020461 311 YVRLHHFDP 319 (326)
Q Consensus 311 ~i~l~~~~~ 319 (326)
.+++|=+.+
T Consensus 304 ~vKiFG~~~ 312 (313)
T KOG1407|consen 304 TVKIFGLSN 312 (313)
T ss_pred eeEEecCCC
Confidence 788876654
No 53
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=4.4e-29 Score=218.04 Aligned_cols=197 Identities=19% Similarity=0.315 Sum_probs=156.4
Q ss_pred ceeeeecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCC-------CeeeeccCcccceEEEEEcCCC-CeEEEEeCC
Q 020461 3 PILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDS-MTLITGSAD 73 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d 73 (326)
|.++.||.+.|.+++|+| ++++|++|+.|++|++|++.++ +.+..+.+|...|.+++|+|++ ++|++++.|
T Consensus 68 ~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 68 PPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred CceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 457899999999999999 8899999999999999999765 3466789999999999999975 689999999
Q ss_pred CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461 74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (326)
Q Consensus 74 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (326)
++|++||+++++... .+.+|...|.+++
T Consensus 148 gtVrIWDl~tg~~~~----------------------------------------------------~l~~h~~~V~sla 175 (493)
T PTZ00421 148 MVVNVWDVERGKAVE----------------------------------------------------VIKCHSDQITSLE 175 (493)
T ss_pred CEEEEEECCCCeEEE----------------------------------------------------EEcCCCCceEEEE
Confidence 999999998754321 2345677899999
Q ss_pred EecCCcEEEEeeCCCcEEEEECCCCccccccccccCccee-eEEEEEcCCCCeEEEEe----CCCeEEEeecCCcc-eEE
Q 020461 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT-ITSLAKAADGSHFLTGS----LDKSAKLWDARTLE-LIK 227 (326)
Q Consensus 154 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~-v~~v~~s~~~~~l~s~s----~dg~i~iwd~~~~~-~~~ 227 (326)
|+|++..|++++.|++|++||+++++.+..+ .+|... ...+.|.+++..+++++ .|++|++||+++.. ++.
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl---~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV---EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEEE---ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 9999999999999999999999988776554 356543 34667888888887764 47999999998754 333
Q ss_pred EEe--eccceEEEEeCCCCCeeEEecCCC
Q 020461 228 TYV--TERPVNAVTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 228 ~~~--~~~~~~~~~~s~~~~~~~~~~~~~ 254 (326)
... ....+....++++++.+++++..|
T Consensus 253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 253 TVDLDQSSALFIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred EeccCCCCceEEEEEcCCCCEEEEEEeCC
Confidence 322 123455567889988888776433
No 54
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-28 Score=190.50 Aligned_cols=248 Identities=20% Similarity=0.260 Sum_probs=190.8
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC--CCcEEEEEc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA--DQTAKLWNV 81 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~--d~~i~~wd~ 81 (326)
..++.....|.++.|+++|.+|++++.|-+++|||..++..+.++..+.-.|..+.|......++.++. |.+||.-++
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 455556788999999999999999999999999999999999999888888888888766666655554 788888776
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
.+++ .++.+.||...|+.+..+|-+..+
T Consensus 88 ~dNk----------------------------------------------------ylRYF~GH~~~V~sL~~sP~~d~F 115 (311)
T KOG1446|consen 88 HDNK----------------------------------------------------YLRYFPGHKKRVNSLSVSPKDDTF 115 (311)
T ss_pred ecCc----------------------------------------------------eEEEcCCCCceEEEEEecCCCCeE
Confidence 5543 455678999999999999999999
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc--ceEEEEee----ccce
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKTYVT----ERPV 235 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~----~~~~ 235 (326)
++++.|++|++||++..++...+. ...-...+++|+|-.+|++.....|++||+|+. .+..++.. ....
T Consensus 116 lS~S~D~tvrLWDlR~~~cqg~l~-----~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew 190 (311)
T KOG1446|consen 116 LSSSLDKTVRLWDLRVKKCQGLLN-----LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEW 190 (311)
T ss_pred EecccCCeEEeeEecCCCCceEEe-----cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccce
Confidence 999999999999999777654332 223346789999999999998889999999975 44555532 3467
Q ss_pred EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCc---ceeEEEECCCCceEEeecCCCcE
Q 020461 236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG---PINALAFNPDGKSFSSGGEDGYV 312 (326)
Q Consensus 236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~v~~s~d~~~lat~s~Dg~i 312 (326)
+.+.|||+|+.++++...+.. ...|--.|. ....+.++.. --...+|+||++++.+|+.||+|
T Consensus 191 ~~l~FS~dGK~iLlsT~~s~~--~~lDAf~G~------------~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 191 TDLEFSPDGKSILLSTNASFI--YLLDAFDGT------------VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred eeeEEcCCCCEEEEEeCCCcE--EEEEccCCc------------EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcE
Confidence 889999999998887654432 222222222 1222222221 12578899999999999999999
Q ss_pred EEeecCCCce
Q 020461 313 RLHHFDPDYF 322 (326)
Q Consensus 313 ~l~~~~~~~~ 322 (326)
.+|+++....
T Consensus 257 ~vw~~~tg~~ 266 (311)
T KOG1446|consen 257 HVWNLETGKK 266 (311)
T ss_pred EEEEcCCCcE
Confidence 9999965543
No 55
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3.1e-29 Score=202.38 Aligned_cols=249 Identities=22% Similarity=0.329 Sum_probs=205.7
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
.+++||...|+.+.|+|+...+++++.|..|+||...+.......+.|.++|+.+..+|.|+||++++.|++.-+.|+++
T Consensus 255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~ 334 (506)
T KOG0289|consen 255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS 334 (506)
T ss_pred hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccC
Confidence 57899999999999999999999999999999999888888878889999999999999999999999999999999988
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
+.++.....+ +..-.+++.+|+|||-.|.+
T Consensus 335 g~~lt~vs~~--------------------------------------------------~s~v~~ts~~fHpDgLifgt 364 (506)
T KOG0289|consen 335 GSQLTVVSDE--------------------------------------------------TSDVEYTSAAFHPDGLIFGT 364 (506)
T ss_pred CcEEEEEeec--------------------------------------------------cccceeEEeeEcCCceEEec
Confidence 8765432211 01123677899999999999
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc--ceEEEEeC
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMS 241 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~s 241 (326)
|..|+.|++||+.++..... ..+|.++|.+++|+.+|-+|++++.|+.|++||+|.-+.++++..+. .++.+.|.
T Consensus 365 gt~d~~vkiwdlks~~~~a~---Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD 441 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTNVAK---FPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFD 441 (506)
T ss_pred cCCCceEEEEEcCCcccccc---CCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEc
Confidence 99999999999998775444 45899999999999999999999999999999999988888887554 59999999
Q ss_pred CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
+.|..+.++| ++- .+..++... ..-.+...+..|.+..+.+.|...-++++++|.|..++|+.+
T Consensus 442 ~SGt~L~~~g-~~l-~Vy~~~k~~----------k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 442 QSGTYLGIAG-SDL-QVYICKKKT----------KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred CCCCeEEeec-cee-EEEEEeccc----------ccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 9998888773 321 122222111 122334456678889999999999999999999999998765
No 56
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=4.2e-28 Score=212.99 Aligned_cols=236 Identities=18% Similarity=0.216 Sum_probs=172.6
Q ss_pred ecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCe
Q 020461 28 CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK 106 (326)
Q Consensus 28 ~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (326)
|+.++.+++|+......+..+.+|.++|.+++|+|+ +++|++|+.|++|++||+.++.....
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~----------------- 112 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----------------- 112 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----------------
Confidence 667889999998777788889999999999999996 78999999999999999975421000
Q ss_pred EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE-EEEeeCCCcEEEEECCCCccccccc
Q 020461 107 LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETGKLLKESD 185 (326)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~ 185 (326)
.-..+...+.+|...|.+++|+|++.. +++++.|++|++||+++++....+
T Consensus 113 ---------------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i- 164 (568)
T PTZ00420 113 ---------------------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI- 164 (568)
T ss_pred ---------------------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE-
Confidence 000123345678899999999999875 579999999999999988765443
Q ss_pred cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-ccce-----EEEEeCCCCCeeEEecCCCc--ce
Q 020461 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPV-----NAVTMSPLLDHVVLGGGQDA--SA 257 (326)
Q Consensus 186 ~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~-----~~~~~s~~~~~~~~~~~~~~--~~ 257 (326)
.|...|.+++|+++|.+|++++.|+.|++||+++++.+.++.. ...+ ....+++++..++++|.++. ..
T Consensus 165 ---~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~ 241 (568)
T PTZ00420 165 ---NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE 241 (568)
T ss_pred ---ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE
Confidence 2456799999999999999999999999999999998887753 2222 22335577777776665432 12
Q ss_pred eEeecccCceeeeEeecccceeeec--cccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCce
Q 020461 258 VTTTDHRAGKFEAKFFDKILQEEIG--GVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF 322 (326)
Q Consensus 258 ~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~ 322 (326)
+.+||.+. ...++. .+..+.+.+.-....++|.++++|+.|++||+|.+..+++
T Consensus 242 VkLWDlr~-----------~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 242 MKLWDLKN-----------TTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI 297 (568)
T ss_pred EEEEECCC-----------CCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE
Confidence 33444332 112222 1223334444444466799999999999999999987754
No 57
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.2e-30 Score=203.72 Aligned_cols=279 Identities=20% Similarity=0.267 Sum_probs=200.7
Q ss_pred eeecCCceeEEEEccCC-CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461 6 MKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 84 (326)
|.||.+.|.|++=+|.. ..+++|+.||.|+|||+...++..+|++|.+.|..|++.. ..++++|.|++|+.|-++..
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC
Confidence 58999999999999976 7899999999999999999999999999999999999876 67899999999999988753
Q ss_pred cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEE
Q 020461 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIIS 163 (326)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 163 (326)
...++-.+.....++-...+...+.+++ .+.+|+..++ .++..+.-....|.++.|+|... .|++
T Consensus 140 -p~~tilg~s~~~gIdh~~~~~~FaTcGe-------~i~IWD~~R~------~Pv~smswG~Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 140 -PLHTILGKSVYLGIDHHRKNSVFATCGE-------QIDIWDEQRD------NPVSSMSWGADSISSVKFNPVETSILAS 205 (433)
T ss_pred -cceeeeccccccccccccccccccccCc-------eeeecccccC------CccceeecCCCceeEEecCCCcchheee
Confidence 4444433333333333322333222221 2344544433 23333443445688899999765 6678
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce-EEEE-eeccceEEEEeC
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTY-VTERPVNAVTMS 241 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~-~~~~~~~~~~~s 241 (326)
|+.|+.|.|+|++++++++.+.. ...-..++|+|.+-.+++|++|..++.+|++..+. +..+ .+...+..+.|+
T Consensus 206 ~~sDrsIvLyD~R~~~Pl~KVi~----~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQASPLKKVIL----TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred eccCCceEEEecccCCccceeee----eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 88999999999999988776532 23457889999999999999999999999986543 2222 244578899999
Q ss_pred CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc-cccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
|.|..+++++ .|.. +++|....+..-..+ ......|.+|.||-|.+++++||.|+.||||.--
T Consensus 282 ptG~Efvsgs-yDks-------------IRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 282 PTGQEFVSGS-YDKS-------------IRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred CCcchhcccc-ccce-------------EEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 9999877654 3332 233332221110000 0012358999999999999999999999999753
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.1e-28 Score=212.28 Aligned_cols=306 Identities=22% Similarity=0.320 Sum_probs=221.8
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
+..|+++|..++|+|+..+++||+.|-+|++|+.++.+++.++.||-..|..+.|++.-.+++|+|.|.|||+|+.++++
T Consensus 47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~ 126 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK 126 (1202)
T ss_pred hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence 45699999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred EEEEEecC-CCcceeeeecCCeEEEEEcCccceeceeeeeeeecc------CCC-------------CCCC--c--eEEE
Q 020461 86 QLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR------DPA-------------DQGG--E--SVLI 141 (326)
Q Consensus 86 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-------------~~~~--~--~~~~ 141 (326)
++..+..+ .-+.+..|+|.+..++.++ ++..+++|++.- .+. +--+ . .-.+
T Consensus 127 ~iavltGHnHYVMcAqFhptEDlIVSaS-----LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 127 CIAVLTGHNHYVMCAQFHPTEDLIVSAS-----LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred eEEEEecCceEEEeeccCCccceEEEec-----ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 99887643 4466677888555544332 233444443311 010 0000 1 1246
Q ss_pred eccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (326)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~ 221 (326)
++||...|+.++|+|.-+.|++|++|..|++|..+.-+. -++....+|...|.++-|+|....+++.|+|++|++||+.
T Consensus 202 LEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred ecccccccceEEecCCcceEEecCCcceeeEEEeccccc-eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence 789999999999999999999999999999999864332 2445567999999999999999999999999999999999
Q ss_pred CcceEEEEeec-cceEEEEeCCCCCeeEEecCCCcceeEeec-ccC------------ceeeeEeecccceee--ecccc
Q 020461 222 TLELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDASAVTTTD-HRA------------GKFEAKFFDKILQEE--IGGVK 285 (326)
Q Consensus 222 ~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d-~~~------------~~~~~~~~~~~~~~~--~~~~~ 285 (326)
....++++..+ ....+++-+|..+.++++ .+.+..++..+ .|. ..-.++.++..+.+. +..++
T Consensus 281 kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr 359 (1202)
T KOG0292|consen 281 KRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLR 359 (1202)
T ss_pred cccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEecc
Confidence 99999999654 467889999988766554 33333333222 110 011123333222111 11122
Q ss_pred c---cCcceeEEEECCCCceEEee-cCC-CcEEEeecC
Q 020461 286 G---HFGPINALAFNPDGKSFSSG-GED-GYVRLHHFD 318 (326)
Q Consensus 286 ~---h~~~v~~v~~s~d~~~lat~-s~D-g~i~l~~~~ 318 (326)
. -..++.++.|+|....+..+ +.| |.--|..+.
T Consensus 360 ~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 360 RPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred CCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence 1 23578899999976654434 333 444444443
No 59
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4e-29 Score=210.21 Aligned_cols=239 Identities=19% Similarity=0.305 Sum_probs=198.5
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
.-+-+|.+..|-.-.+++++|+.|..||+|+..+++.+..|.+|...|.+++.+|...+++|+|.|.+||+||.+.+-
T Consensus 53 V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w-- 130 (794)
T KOG0276|consen 53 VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW-- 130 (794)
T ss_pred ecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce--
Confidence 345677788888888999999999999999999999999999999999999999999999999999999999986431
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEEEEeeC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGE 166 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~ 166 (326)
.+..+++||...|.+++|+|.. ..|++++-
T Consensus 131 -------------------------------------------------a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 131 -------------------------------------------------ACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred -------------------------------------------------eeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 1234567899999999999965 68999999
Q ss_pred CCcEEEEECCCCccccccccccCcceeeEEEEEcCC--CCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCC
Q 020461 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPL 243 (326)
Q Consensus 167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~ 243 (326)
|++|++|.+.+..+..++. +|...|.++++-+. .++|+||+.|.+|++||.++..|++++. +...++.++|+|.
T Consensus 162 DrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~ 238 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE 238 (794)
T ss_pred cccEEEEEcCCCCCceeee---ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCC
Confidence 9999999998777666553 89999999999864 4699999999999999999999999987 5678999999999
Q ss_pred CCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE
Q 020461 244 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314 (326)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l 314 (326)
...+++ |++|+. .++|...+-..-..+..--++|+||+-.++...+|.|.+.|.|.+
T Consensus 239 lpiiis-gsEDGT-------------vriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 239 LPIIIS-GSEDGT-------------VRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CcEEEE-ecCCcc-------------EEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 876665 455542 345555443333333334478999999998888999998887754
No 60
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=5.2e-29 Score=221.65 Aligned_cols=269 Identities=22% Similarity=0.340 Sum_probs=200.8
Q ss_pred CceeeeecCCceeEEEEccCCCEEEeec--CCCCeEEEecCC------------CCeeeeccCcccceEEEEEcCCCCeE
Q 020461 2 RPILMKGHERPLTYLKYNKDGDLLFSCA--KDHTPTVWFADN------------GERLGTYRGHNGAVWCCDVSRDSMTL 67 (326)
Q Consensus 2 ~~~~~~~h~~~i~~~~~s~~~~~l~s~~--~d~~v~iw~~~~------------~~~~~~~~~h~~~V~~~~~~~~~~~l 67 (326)
.|..+..++..|..++.+|||..++||+ .|+.++||+.+. ...+.+...|.+.|+|+.|+|||++|
T Consensus 5 kp~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~l 84 (942)
T KOG0973|consen 5 KPTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYL 84 (942)
T ss_pred cccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeE
Confidence 3566666777899999999999999999 999999997642 12234567899999999999999999
Q ss_pred EEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461 68 ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (326)
Q Consensus 68 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (326)
|+||.|+.|.+|.-.....-..+ ..++.. ...+.-..+..+++|.+
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~f-------------------gs~g~~---------------~~vE~wk~~~~l~~H~~ 130 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVF-------------------GSTGGA---------------KNVESWKVVSILRGHDS 130 (942)
T ss_pred eeccCcceEEEeeecccCCcccc-------------------cccccc---------------cccceeeEEEEEecCCC
Confidence 99999999999987531000000 000000 00011245677889999
Q ss_pred ceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEE
Q 020461 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (326)
Q Consensus 148 ~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 227 (326)
.|..++|+|++.++++++.|++|.+|+.++.+.+..+ .+|...|..+.|+|-|+||++-+.|++|++|+.....+.+
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl---~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k 207 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL---RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK 207 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEccccceeeeee---ecccccccceEECCccCeeeeecCCceEEEEEcccceeeE
Confidence 9999999999999999999999999999988665544 5899999999999999999999999999999977766655
Q ss_pred EEee-------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC-
Q 020461 228 TYVT-------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD- 299 (326)
Q Consensus 228 ~~~~-------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d- 299 (326)
.+.. .....-+.|||+|.++++.-+..+ +...+.+.++.+-.--..+-||.+++.+++|+|.
T Consensus 208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~----------~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~l 277 (942)
T KOG0973|consen 208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG----------GKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKL 277 (942)
T ss_pred eeccchhhCCCcceeeecccCCCcCeecchhhccC----------CcceeEEEecCCceeeeeeecCCCceEEEEeChHH
Confidence 5532 234667889999999887643221 1112222222222212346789999999999991
Q ss_pred ----Cc------------eEEeecCCCcEEEeec
Q 020461 300 ----GK------------SFSSGGEDGYVRLHHF 317 (326)
Q Consensus 300 ----~~------------~lat~s~Dg~i~l~~~ 317 (326)
.+ .+|+||.|++|.||..
T Consensus 278 fe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 278 FERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred hccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 11 5899999999999975
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=205.99 Aligned_cols=239 Identities=18% Similarity=0.308 Sum_probs=198.1
Q ss_pred cCCceeEEEEccCCCE-EEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 9 HERPLTYLKYNKDGDL-LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~-l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
..++|.+++|||...+ +|++++ -.+.||+..+....+++......|.+++|..||++|+.|+..|.|+++|+++..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-- 101 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-- 101 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH--
Confidence 3467999999997664 444433 478999998888888888889999999999999999999999999999965421
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGE 166 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~ 166 (326)
.+..+.+|+.++....|+|++. .+++|++
T Consensus 102 --------------------------------------------------iLR~~~ah~apv~~~~f~~~d~t~l~s~sD 131 (487)
T KOG0310|consen 102 --------------------------------------------------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSD 131 (487)
T ss_pred --------------------------------------------------HHHHHhhccCceeEEEecccCCeEEEecCC
Confidence 1223467888999999999765 6678999
Q ss_pred CCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCc-ceEEEEeeccceEEEEeCCCC
Q 020461 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLL 244 (326)
Q Consensus 167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~s~~~ 244 (326)
|+.+++||+.++.. .....+|...|.+.+++|. +..++|||+||+|++||.++. ..+.++.++.++..+.+-|.+
T Consensus 132 d~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsg 208 (487)
T KOG0310|consen 132 DKVVKYWDLSTAYV---QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSG 208 (487)
T ss_pred CceEEEEEcCCcEE---EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCC
Confidence 99999999988763 2234689999999999986 447999999999999999987 788888899999999999999
Q ss_pred CeeEEecCCCcceeEeecccCceeeeEeecccc-eeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
..++++||+ .++.||... ++.+..+..|..+|+|+++..++..|.|||-|+.|++|+..
T Consensus 209 s~iasAgGn---------------~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 209 SLIASAGGN---------------SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred CEEEEcCCC---------------eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEcc
Confidence 999988875 467788763 44555556699999999999999999999999999998844
No 62
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.3e-29 Score=192.84 Aligned_cols=292 Identities=19% Similarity=0.306 Sum_probs=195.3
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCee--eeccC--cccceEEEEEcCCCC-eEEEEeCCCcEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--GTYRG--HNGAVWCCDVSRDSM-TLITGSADQTAKL 78 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~--~~~~~--h~~~V~~~~~~~~~~-~l~s~~~d~~i~~ 78 (326)
-+|+||.+.|++++||.||++|++++.|++|+||++.+-+.. +.++. .-+.-+.+.|+||.+ .++++-...++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 578999999999999999999999999999999998764221 11110 011235678999976 4556667778999
Q ss_pred EEccC---CcE----EE--EEec----CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC
Q 020461 79 WNVET---GAQ----LF--TFNF----DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145 (326)
Q Consensus 79 wd~~~---~~~----~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (326)
|-+.. |.. +. ...+ .-++..+-...+.+++..+.. ...+.+|.+. |+.+..+...
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~-----dt~i~lw~lk-------Gq~L~~idtn 227 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASL-----DTKICLWDLK-------GQLLQSIDTN 227 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecC-----CCcEEEEecC-------Cceeeeeccc
Confidence 97632 210 11 1111 122333333444444433322 2233344332 3444445555
Q ss_pred ccceeEEEEecCCcEEEEeeCCCcEEEEEC---CCCc--cccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDT---ETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 146 ~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~---~~~~--~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~ 220 (326)
+..-+.++.||+|+++++++.--.|++|.+ +.|+ .+.....+.||+..|+.++|+++...++|.|.||++++||.
T Consensus 228 q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 228 QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 566677899999999999999999999986 2332 22334456799999999999999999999999999999997
Q ss_pred CC-------cceEEEEe-----eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccC
Q 020461 221 RT-------LELIKTYV-----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF 288 (326)
Q Consensus 221 ~~-------~~~~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~ 288 (326)
.- ...++... ......-+.++|+++.++++.+.+-..+...+... ++ ++ -..|.
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~-------~~-----~~--e~~h~ 373 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKD-------YP-----EL--EDIHS 373 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCcc-------ch-----hH--HHhhc
Confidence 42 22233221 12234478999999999998776643333222110 01 11 13588
Q ss_pred cceeEEEECCCCceEEeecCCCcEEEeecCCCce
Q 020461 289 GPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF 322 (326)
Q Consensus 289 ~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~ 322 (326)
+.|.+++|+|+|+++|||+ |..+|+++--|.++
T Consensus 374 ~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg~~ 406 (420)
T KOG2096|consen 374 TTISSISYSSDGKYIATCG-DRYVRVIRNTPGWH 406 (420)
T ss_pred CceeeEEecCCCcEEeeec-ceeeeeecCCCchh
Confidence 9999999999999999998 78899988767664
No 63
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.1e-28 Score=214.40 Aligned_cols=234 Identities=24% Similarity=0.442 Sum_probs=190.9
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEec-CCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFA-DNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~-~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
..+.+|...|..++|+|+++++++++.|++++||++ ..+..++++++|...|++++|+|+++++++|+.|++||+||++
T Consensus 197 ~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 197 RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR 276 (456)
T ss_pred ccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence 445889999999999999999999999999999999 5568899999999999999999999999999999999999999
Q ss_pred CCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCc--eEEEeccCccc--eeEEEEecC
Q 020461 83 TGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE--SVLILKGPQGR--INRAVWGPL 157 (326)
Q Consensus 83 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--i~~~~~~~~ 157 (326)
++++...+.. ..++..+.+.+++..++.+.. +..+.+|++.. +. ....+.++... ++.+.|+|+
T Consensus 277 ~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~-----d~~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~fsp~ 345 (456)
T KOG0266|consen 277 TGECVRKLKGHSDGISGLAFSPDGNLLVSASY-----DGTIRVWDLET------GSKLCLKLLSGAENSAPVTSVQFSPN 345 (456)
T ss_pred CCeEEEeeeccCCceEEEEECCCCCEEEEcCC-----CccEEEEECCC------CceeeeecccCCCCCCceeEEEECCC
Confidence 9999888865 457777888877766665432 33445555432 22 23455555544 899999999
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcce---eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec--
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK---TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-- 232 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~---~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-- 232 (326)
+.++++++.|+.+++||+..+....... +|.. .+.+...++.+.++++|+.|+.|++||+.++..+..+...
T Consensus 346 ~~~ll~~~~d~~~~~w~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~ 422 (456)
T KOG0266|consen 346 GKYLLSASLDRTLKLWDLRSGKSVGTYT---GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSK 422 (456)
T ss_pred CcEEEEecCCCeEEEEEccCCcceeeec---ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCC
Confidence 9999999999999999999888776654 3444 4455566889999999999999999999998888777644
Q ss_pred cceEEEEeCCCCCeeEEec
Q 020461 233 RPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 233 ~~~~~~~~s~~~~~~~~~~ 251 (326)
..+..++++|....++..+
T Consensus 423 ~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 423 AAVSDLSSHPTENLIASSS 441 (456)
T ss_pred CceeccccCCCcCeeeecC
Confidence 5677888888877776655
No 64
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=3.9e-28 Score=212.47 Aligned_cols=276 Identities=26% Similarity=0.445 Sum_probs=214.3
Q ss_pred cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeee-ccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
|...+.+..|. +.++.+++.|.++.+|+..++..+.. +.+|.+.|+++++..-+.++++|+.|.++|+||..+|+++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 55667888888 56799999999999999999999888 9999999999999876789999999999999999999999
Q ss_pred EEEecC-CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461 88 FTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (326)
Q Consensus 88 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 166 (326)
.++..+ ..+.++... ....+ + ...+..+.+|.+. .+..+..+.+|.++|+++..+ +.++++|+.
T Consensus 285 ~~l~gh~stv~~~~~~--~~~~~-s----gs~D~tVkVW~v~------n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~ 349 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTID--PFLLV-S----GSRDNTVKVWDVT------NGACLNLLRGHTGPVNCVQLD--EPLLVSGSY 349 (537)
T ss_pred EEecCCCceEEEEEcc--CceEe-e----ccCCceEEEEecc------CcceEEEeccccccEEEEEec--CCEEEEEec
Confidence 988743 333333221 11111 1 1123345556553 456778888899999999998 789999999
Q ss_pred CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc-ceEEEEeeccceEEEEeCCCCC
Q 020461 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLLD 245 (326)
Q Consensus 167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~s~~~~ 245 (326)
|++|++||+.++++++.+. +|...|.++.+... ..+++|+.|++|++||++++ +|+..+.....+. ..+...++
T Consensus 350 d~~v~VW~~~~~~cl~sl~---gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~ 424 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCLKSLS---GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDN 424 (537)
T ss_pred CceEEEEEhhhceeeeeec---CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc-cccccccc
Confidence 9999999999999887764 79999999988775 79999999999999999999 8888876543322 22233334
Q ss_pred eeEEecCCCcceeEeecccCceeeeEeecccceeeeccccc-cCcceeEEEECCCCceEEeecCCCcEEEeecCCCce
Q 020461 246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF 322 (326)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~ 322 (326)
.++.+.. |+ .+++|+...++.+..+.+ |.+.|..+++. ...+++++.||++++|++++.-+
T Consensus 425 ~Lvs~~a-D~-------------~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 425 FLVSSSA-DG-------------TIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred eeEeccc-cc-------------cEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 4444332 22 467788877777777887 67889988876 57788899999999999987543
No 65
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=8.7e-28 Score=206.05 Aligned_cols=299 Identities=26% Similarity=0.389 Sum_probs=202.5
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
+..+.||+.+|+++.|+..|.+|+|||.|+.|.+||+-..+-...++||...|+..-|..+.+++++.|.|+.||+||+.
T Consensus 100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~ 179 (888)
T KOG0306|consen 100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE 179 (888)
T ss_pred eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecc
Confidence 46788999999999999999999999999999999998877788889999999888887777889999999999999986
Q ss_pred CCcEEEEE-----------------------------ec--C---------------------CCcceeeee--cCCeEE
Q 020461 83 TGAQLFTF-----------------------------NF--D---------------------SPARSVDFA--VGDKLA 108 (326)
Q Consensus 83 ~~~~~~~~-----------------------------~~--~---------------------~~~~~~~~~--~~~~~~ 108 (326)
+..+..+. .. + +..+.+.+. ..+.++
T Consensus 180 tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~ 259 (888)
T KOG0306|consen 180 TQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFL 259 (888)
T ss_pred cceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEE
Confidence 54321111 00 0 000000000 001111
Q ss_pred EEE-----------------------------------------------------------------------------
Q 020461 109 VIT----------------------------------------------------------------------------- 111 (326)
Q Consensus 109 ~~~----------------------------------------------------------------------------- 111 (326)
++.
T Consensus 260 ~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv 339 (888)
T KOG0306|consen 260 VCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLV 339 (888)
T ss_pred EEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEE
Confidence 100
Q ss_pred --cCccc---eece--e----------ee-------ee--eeccCC---CCCCCceEEEeccC---------ccceeEEE
Q 020461 112 --TDPFM---ELNS--A----------IH-------VK--RIARDP---ADQGGESVLILKGP---------QGRINRAV 153 (326)
Q Consensus 112 --~~~~~---~~~~--~----------~~-------~~--~~~~~~---~~~~~~~~~~~~~~---------~~~i~~~~ 153 (326)
.+... .+.. . +. +. .+..+. ....+..+..+.-+ .+.+.+..
T Consensus 340 ~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~ 419 (888)
T KOG0306|consen 340 LLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASK 419 (888)
T ss_pred EeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEE
Confidence 00000 0000 0 00 00 000000 00111222222211 23566788
Q ss_pred EecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc---------
Q 020461 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--------- 224 (326)
Q Consensus 154 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~--------- 224 (326)
|-|-++++++|...|.+.++|+.+...+.++. +|.+.+.+++.+||+..++|||.|.+|++||..--.
T Consensus 420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~---AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ 496 (888)
T KOG0306|consen 420 FVPGDRYIVLGTKNGELQVFDLASASLVETIR---AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV 496 (888)
T ss_pred ecCCCceEEEeccCCceEEEEeehhhhhhhhh---ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccccee
Confidence 89999999999999999999999887766553 799999999999999999999999999999964211
Q ss_pred ----eEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC
Q 020461 225 ----LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300 (326)
Q Consensus 225 ----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~ 300 (326)
..+++..+..+-|+.+||++..++++==+..+-++ +.+. -+-+-.+-||.=||.||.+|||+
T Consensus 497 lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy------------flDt--lKFflsLYGHkLPV~smDIS~DS 562 (888)
T KOG0306|consen 497 LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY------------FLDT--LKFFLSLYGHKLPVLSMDISPDS 562 (888)
T ss_pred eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE------------Eecc--eeeeeeecccccceeEEeccCCc
Confidence 11233445678999999999988876333322222 2222 22233467899999999999999
Q ss_pred ceEEeecCCCcEEEeecC
Q 020461 301 KSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 301 ~~lat~s~Dg~i~l~~~~ 318 (326)
++++|||+|.+|++|=+|
T Consensus 563 klivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 563 KLIVTGSADKNVKIWGLD 580 (888)
T ss_pred CeEEeccCCCceEEeccc
Confidence 999999999999999765
No 66
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=6.9e-29 Score=204.46 Aligned_cols=257 Identities=19% Similarity=0.301 Sum_probs=184.1
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC---------------------------Ceee----------
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---------------------------ERLG---------- 46 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~---------------------------~~~~---------- 46 (326)
+.+.+|...|.++++.|.|.++++||.|-+|++||.... ..+.
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 467888999999999999999999999999999997521 1100
Q ss_pred ----------------------eccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCcE-EEEEecCCCcceeeee
Q 020461 47 ----------------------TYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQ-LFTFNFDSPARSVDFA 102 (326)
Q Consensus 47 ----------------------~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~ 102 (326)
..+||...++|.+|+|+. +.++|++.||++|+||++..+. ..++...
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k--------- 311 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK--------- 311 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec---------
Confidence 015788888888888865 4678888888888888765431 1111100
Q ss_pred cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccc
Q 020461 103 VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182 (326)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 182 (326)
...+..-+++.++|+|+++.|+.|..||.|.+||........
T Consensus 312 --------------------------------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p 353 (641)
T KOG0772|consen 312 --------------------------------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP 353 (641)
T ss_pred --------------------------------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc
Confidence 000122356789999999999999999999999975433322
Q ss_pred ccccccCcce--eeEEEEEcCCCCeEEEEeCCCeEEEeecCCc-ceEEEEe---eccceEEEEeCCCCCeeEEecCCCcc
Q 020461 183 ESDKETGHKK--TITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYV---TERPVNAVTMSPLLDHVVLGGGQDAS 256 (326)
Q Consensus 183 ~~~~~~~h~~--~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~ 256 (326)
.+....+|.. .|+|+.||+||++|++-+.|+++++||+++. +++.... ...+-..++|||+...++++......
T Consensus 354 ~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 354 VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNG 433 (641)
T ss_pred ceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCC
Confidence 2222346766 8999999999999999999999999999974 4444432 23456788999998776665432211
Q ss_pred eeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH 315 (326)
Q Consensus 257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~ 315 (326)
...-.+.+|+..+-+.+..+.--..-|..+.|+|--+.+..|+.||+++++
T Consensus 434 --------~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 434 --------MTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred --------CCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 111235566666555555555456678999999999999999999999985
No 67
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1e-27 Score=186.34 Aligned_cols=242 Identities=17% Similarity=0.324 Sum_probs=190.7
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCC--eEEEEeCCCcEEEEEcc
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLWNVE 82 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~~~d~~i~~wd~~ 82 (326)
.+..|..+|++++.+ +.++||||.|-+|+|||..+...+..+-.|++.|+++.|.++-. .|++|+.||.|.+|+..
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 456799999999865 88999999999999999999988999999999999999998754 89999999999999976
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
..+ .+..+++|.+.|+.++.+|.++..+
T Consensus 116 ~W~----------------------------------------------------~~~slK~H~~~Vt~lsiHPS~KLAL 143 (362)
T KOG0294|consen 116 SWE----------------------------------------------------LLKSLKAHKGQVTDLSIHPSGKLAL 143 (362)
T ss_pred CeE----------------------------------------------------EeeeecccccccceeEecCCCceEE
Confidence 532 2334678888899999999999999
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~ 242 (326)
+.+.|+.+++|++-.|+.-.... ..+ ..+.+.|+|.|.+++.++.+ .|-+|.+.+-.....+..+..+.++.|-.
T Consensus 144 sVg~D~~lr~WNLV~Gr~a~v~~--L~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~ 218 (362)
T KOG0294|consen 144 SVGGDQVLRTWNLVRGRVAFVLN--LKN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLD 218 (362)
T ss_pred EEcCCceeeeehhhcCccceeec--cCC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecC
Confidence 99999999999998876544332 122 33459999999999988876 48899888766655555444444554443
Q ss_pred CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE--CCCCceEEeecCCCcEEEeecCCC
Q 020461 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF--NPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
++.+++ |+++. .+.+||.....+...+.+|..+|.++.+ +|++.+|+|+|.||.|++|+++.+
T Consensus 219 -~~~L~v-G~d~~-------------~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 219 -GSELLV-GGDNE-------------WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -CceEEE-ecCCc-------------eEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 233444 44332 2445555555566678899999999995 688999999999999999999987
No 68
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=4.4e-29 Score=200.02 Aligned_cols=237 Identities=20% Similarity=0.310 Sum_probs=191.6
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcc-cceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
+++..|+.+|.++.|++++.+++||+.+|.|++|+.+ ...++.+.+|. .+|.+++|+|+...|++||.|++|+|||..
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 3577899999999999999999999999999999853 45566677765 899999999998999999999999999998
Q ss_pred CCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
..+.-..+. +.-.+.+++|++...+++.++.. ..+++|+. .++.++..+-+|.+.|..+.|+|++++|
T Consensus 211 ~~kee~vL~GHgwdVksvdWHP~kgLiasgskD-----nlVKlWDp------rSg~cl~tlh~HKntVl~~~f~~n~N~L 279 (464)
T KOG0284|consen 211 MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKD-----NLVKLWDP------RSGSCLATLHGHKNTVLAVKFNPNGNWL 279 (464)
T ss_pred CCchhheeccCCCCcceeccCCccceeEEccCC-----ceeEeecC------CCcchhhhhhhccceEEEEEEcCCCCee
Confidence 776544443 34567889999877776665432 23444443 4567888889999999999999999999
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEe--eccceEEE
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAV 238 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~ 238 (326)
+++|.|..++++|+++.+.+.. ..+|...++++.|+|- ...|.+|+.||.|..|.+...+++..+. +...|.++
T Consensus 280 lt~skD~~~kv~DiR~mkEl~~---~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl 356 (464)
T KOG0284|consen 280 LTGSKDQSCKVFDIRTMKELFT---YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSL 356 (464)
T ss_pred EEccCCceEEEEehhHhHHHHH---hhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeee
Confidence 9999999999999986554444 3589999999999994 5678899999999999988666655543 55689999
Q ss_pred EeCCCCCeeEEecCCCcc
Q 020461 239 TMSPLLDHVVLGGGQDAS 256 (326)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~ 256 (326)
+++|-|-.++. |+.|..
T Consensus 357 ~~hPlGhil~t-gsnd~t 373 (464)
T KOG0284|consen 357 AYHPLGHILAT-GSNDRT 373 (464)
T ss_pred eccccceeEee-cCCCcc
Confidence 99998866555 555554
No 69
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.9e-28 Score=188.65 Aligned_cols=287 Identities=24% Similarity=0.395 Sum_probs=207.9
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc--
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV-- 81 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~-- 81 (326)
+.+.||++.|..++-...-+++.++|.|++.+||.+++|.|+.++.||.+.|+++.|++.+.++++++.|++..+|..
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av 221 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV 221 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence 457899999999988877789999999999999999999999999999999999999999999999999999999962
Q ss_pred --cCCcE------------------------------------EEEEe-cCCCcceeeeecCCeEEEEEcCccceeceee
Q 020461 82 --ETGAQ------------------------------------LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAI 122 (326)
Q Consensus 82 --~~~~~------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (326)
...+. +..+. +...+.+++|..+....+...
T Consensus 222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS---------- 291 (481)
T KOG0300|consen 222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS---------- 291 (481)
T ss_pred cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee----------
Confidence 11100 00000 001111122221111111100
Q ss_pred eeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC
Q 020461 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD 202 (326)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~ 202 (326)
..+.+.-+....++.+..+.||...++.+.-+|..+++++.+.|.+.++||.+ +.+..+....||...|+++.|..+
T Consensus 292 -WDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS~vF~~d 368 (481)
T KOG0300|consen 292 -WDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTSVVFNTD 368 (481)
T ss_pred -ccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecccccceeEEEEecC
Confidence 00111112335678888999999999999999999999999999999999997 345555666799999999999876
Q ss_pred CCeEEEEeCCCeEEEeecCCc-ceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce---
Q 020461 203 GSHFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ--- 278 (326)
Q Consensus 203 ~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--- 278 (326)
. .+++|+.|.+|++||+++. .++.++....+++-++.+..+..+++- - |+| .+++|+.+..
T Consensus 369 d-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiP--h--------DNR----qvRlfDlnG~Rla 433 (481)
T KOG0300|consen 369 D-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIP--H--------DNR----QVRLFDLNGNRLA 433 (481)
T ss_pred C-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEec--c--------CCc----eEEEEecCCCccc
Confidence 4 6999999999999999874 456667777788888877655444332 1 222 2444543321
Q ss_pred -eeeccccccCcceeEEEECCCC--ceEEeecCCCcEEEeecC
Q 020461 279 -EEIGGVKGHFGPINALAFNPDG--KSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 279 -~~~~~~~~h~~~v~~v~~s~d~--~~lat~s~Dg~i~l~~~~ 318 (326)
.+-..-++|...|.|++|.-+- .-|.+|+.|..+-=|++.
T Consensus 434 RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 434 RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred cCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 1122346899999999997543 348899999999888764
No 70
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=8.5e-27 Score=204.83 Aligned_cols=230 Identities=17% Similarity=0.283 Sum_probs=162.9
Q ss_pred eeeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCC--------eeeeccCcccceEEEEEcCCCCe-EEEEeCC
Q 020461 4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE--------RLGTYRGHNGAVWCCDVSRDSMT-LITGSAD 73 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~--------~~~~~~~h~~~V~~~~~~~~~~~-l~s~~~d 73 (326)
..+.+|.++|.+++|+|+ +++|++|+.|++|+||++.++. .+..+.+|...|.+++|+|++.. |++++.|
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 467899999999999997 7899999999999999997642 23467899999999999998875 5799999
Q ss_pred CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461 74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (326)
Q Consensus 74 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (326)
++|++||+.+++....+ . +...|.++.
T Consensus 148 gtIrIWDl~tg~~~~~i----------------------------------------------------~-~~~~V~Sls 174 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQI----------------------------------------------------N-MPKKLSSLK 174 (568)
T ss_pred CeEEEEECCCCcEEEEE----------------------------------------------------e-cCCcEEEEE
Confidence 99999999876543211 0 223578899
Q ss_pred EecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEE-----EEEcCCCCeEEEEeCCC----eEEEeecCC-c
Q 020461 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS-----LAKAADGSHFLTGSLDK----SAKLWDART-L 223 (326)
Q Consensus 154 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~-----v~~s~~~~~l~s~s~dg----~i~iwd~~~-~ 223 (326)
|+|+|..|++++.|+.|++||+++++.+.++ .+|.+.+.+ ..+++++.+++|++.|+ +|++||+++ .
T Consensus 175 wspdG~lLat~s~D~~IrIwD~Rsg~~i~tl---~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~ 251 (568)
T PTZ00420 175 WNIKGNLLSGTCVGKHMHIIDPRKQEIASSF---HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT 251 (568)
T ss_pred ECCCCCEEEEEecCCEEEEEECCCCcEEEEE---ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC
Confidence 9999999999999999999999998876554 356654322 34568999999988775 799999995 5
Q ss_pred ceEEEEeeccceEE--EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc
Q 020461 224 ELIKTYVTERPVNA--VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301 (326)
Q Consensus 224 ~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~ 301 (326)
+++..+........ ..+.++...++++|..|.. +..++...+. ...+..+. +..++..++|.|...
T Consensus 252 ~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~----------~~~l~~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 252 SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS----------IRKVNEYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred CceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc----------EEeecccc-cCCCccceEEccccc
Confidence 66665543332222 2233443444544443432 2233322211 11122222 567888999999654
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.3e-27 Score=212.81 Aligned_cols=256 Identities=23% Similarity=0.400 Sum_probs=197.6
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC-------C-----------CeeeeccCcccceEEEEEcCCCCe
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------G-----------ERLGTYRGHNGAVWCCDVSRDSMT 66 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~-------~-----------~~~~~~~~h~~~V~~~~~~~~~~~ 66 (326)
.+..|.+.|.|+.|+|||++||+||.|+.|.||+.+. + +.+..+++|...|..+.|+|++.+
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence 4667999999999999999999999999999998772 1 245678999999999999999999
Q ss_pred EEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCc
Q 020461 67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146 (326)
Q Consensus 67 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (326)
|+++|.|++|.+||..+.+ .+..+++|+
T Consensus 144 lvS~s~DnsViiwn~~tF~----------------------------------------------------~~~vl~~H~ 171 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFE----------------------------------------------------LLKVLRGHQ 171 (942)
T ss_pred EEEecccceEEEEccccce----------------------------------------------------eeeeeeccc
Confidence 9999999999999987643 234567899
Q ss_pred cceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccccc---CcceeeEEEEEcCCCCeEEEEeC----CCeEEEee
Q 020461 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET---GHKKTITSLAKAADGSHFLTGSL----DKSAKLWD 219 (326)
Q Consensus 147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---~h~~~v~~v~~s~~~~~l~s~s~----dg~i~iwd 219 (326)
+.|.-+.|+|.|++|++-++|++|++|.+.+....+.+.... +-..-..-+.|||||.+|++.-. -.++.|.+
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 999999999999999999999999999976654444433221 22344677899999999998653 34688888
Q ss_pred cCCcceEEEEe-eccceEEEEeCCCC---------------C-eeEEecCCCcceeEeecccCceeeeEeecccceeeec
Q 020461 220 ARTLELIKTYV-TERPVNAVTMSPLL---------------D-HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG 282 (326)
Q Consensus 220 ~~~~~~~~~~~-~~~~~~~~~~s~~~---------------~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 282 (326)
..+-+.-..+. |..++.++.|+|.. . .+++.|+.|.. +.+|......++-
T Consensus 252 R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS-------------lSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 252 RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS-------------LSVWNTALPRPLF 318 (942)
T ss_pred cCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc-------------EEEEecCCCCchh
Confidence 87777666654 55688889887531 1 14445555543 3455555444432
Q ss_pred cccc-cCcceeEEEECCCCceEEeecCCCcEEEeecCCCceeee
Q 020461 283 GVKG-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK 325 (326)
Q Consensus 283 ~~~~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~~~ 325 (326)
..+. -...|.+++|+|||..|..||.||+|.+++|+++.|-..
T Consensus 319 vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ 362 (942)
T KOG0973|consen 319 VIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVA 362 (942)
T ss_pred hhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcc
Confidence 2211 134699999999999999999999999999999887543
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=4.2e-28 Score=194.70 Aligned_cols=242 Identities=25% Similarity=0.324 Sum_probs=188.5
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
.+|.|-.++|+.+.|.++++++++++.|+.+++|++.......++.+|++.|+++.|......+++|+.|.+||+||+..
T Consensus 213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k 292 (459)
T KOG0288|consen 213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK 292 (459)
T ss_pred hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh
Confidence 35667778899999999999999999999999999999999999999999999999987666699999999999999987
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
..+....-+.+ .++.++.+ ...+++
T Consensus 293 ~~C~kt~l~~S-----------------------------------------------------~cnDI~~~--~~~~~S 317 (459)
T KOG0288|consen 293 AYCSKTVLPGS-----------------------------------------------------QCNDIVCS--ISDVIS 317 (459)
T ss_pred hheeccccccc-----------------------------------------------------cccceEec--ceeeee
Confidence 66543321110 11111221 234788
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-----cceEEE
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-----RPVNAV 238 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~ 238 (326)
|-.|+.|++||+++..+...+. . .+.|+++..+++|..+.+++.|.++.+.|+++.+..+.+..+ ...+.+
T Consensus 318 gH~DkkvRfwD~Rs~~~~~sv~---~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv 393 (459)
T KOG0288|consen 318 GHFDKKVRFWDIRSADKTRSVP---L-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV 393 (459)
T ss_pred cccccceEEEeccCCceeeEee---c-CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence 9999999999999888776653 2 358999999999999999999999999999999998887643 457889
Q ss_pred EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
.|||+++.+++++.++.. ..|+...++++.. ....+-...|++++|+|.|.+|++++.++.+++|.
T Consensus 394 vfSpd~~YvaAGS~dgsv--~iW~v~tgKlE~~----------l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 394 VFSPDGSYVAAGSADGSV--YIWSVFTGKLEKV----------LSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EECCCCceeeeccCCCcE--EEEEccCceEEEE----------eccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999888877655532 2333333332211 11112223699999999999999999999999994
No 73
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.9e-27 Score=178.70 Aligned_cols=240 Identities=17% Similarity=0.262 Sum_probs=185.0
Q ss_pred eEEEEccC--CCEEEeec------CCCCeEEEecCCCCeeeeccC--cccceEEEEEcCCC-CeEEEEeCCCcEEEEEcc
Q 020461 14 TYLKYNKD--GDLLFSCA------KDHTPTVWFADNGERLGTYRG--HNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE 82 (326)
Q Consensus 14 ~~~~~s~~--~~~l~s~~------~d~~v~iw~~~~~~~~~~~~~--h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~ 82 (326)
+++.|||- +++.++++ .+|++.|-++.++..+.++.. -...+..++|+++. +.+++++.||++|+||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 67899983 33333322 468888988876666655543 35679999999864 578999999999999953
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTI 161 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 161 (326)
.. ..++..++.|...|.++.|++.. +.+
T Consensus 92 ~~---------------------------------------------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ 120 (311)
T KOG0277|consen 92 MP---------------------------------------------------SKPIHKFKEHKREVYSVDWNTVRRRIF 120 (311)
T ss_pred CC---------------------------------------------------CcchhHHHhhhhheEEeccccccceeE
Confidence 21 12445567888999999999865 577
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEE
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT 239 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~ 239 (326)
++++.|++||+||.+.++.+.++ .+|...|...+|+|. ++.++++|.|+++++||++.......+. +...+.++.
T Consensus 121 ltsSWD~TiKLW~~~r~~Sv~Tf---~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cd 197 (311)
T KOG0277|consen 121 LTSSWDGTIKLWDPNRPNSVQTF---NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCD 197 (311)
T ss_pred EeeccCCceEeecCCCCcceEee---cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeec
Confidence 88899999999999888777765 489999999999984 7789999999999999998754434444 345788899
Q ss_pred eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC-ceEEeecCCCcEEEeecC
Q 020461 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~-~~lat~s~Dg~i~l~~~~ 318 (326)
|+.....++++|+.|.. +..+|.|.. ..++-++.+|.-.|..|+|||.. ..||++|.|-++|||++.
T Consensus 198 w~ky~~~vl~Tg~vd~~-vr~wDir~~-----------r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 198 WSKYNHNVLATGGVDNL-VRGWDIRNL-----------RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred ccccCCcEEEecCCCce-EEEEehhhc-----------cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence 99988888888887764 344554432 23455678999999999999965 579999999999999988
Q ss_pred C
Q 020461 319 P 319 (326)
Q Consensus 319 ~ 319 (326)
.
T Consensus 266 ~ 266 (311)
T KOG0277|consen 266 R 266 (311)
T ss_pred c
Confidence 4
No 74
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.2e-27 Score=183.75 Aligned_cols=279 Identities=16% Similarity=0.211 Sum_probs=206.3
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF 92 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 92 (326)
..|+.|++-|.+||+|..||.|.|||..+...-+.+.+|..+|.+++||+||+.|+|+|.|..|++||+..|.++..+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 57999999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeeecCC--eEEEEEcC--cccee-ceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461 93 DSPARSVDFAVGD--KLAVITTD--PFMEL-NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (326)
Q Consensus 93 ~~~~~~~~~~~~~--~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 167 (326)
++|+..+.++|.. +.+++.-+ +.+.. ....+. .+..+... ..+..-.+..|++.|+++++|...
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~----------dln~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDG----------DLNSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCcc----------ccccccccccccCCCCEEEEecCc
Confidence 9999999998743 33322211 11110 000000 00000000 001111223588999999999999
Q ss_pred CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC-------cceE--EEE---eeccce
Q 020461 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-------LELI--KTY---VTERPV 235 (326)
Q Consensus 168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~-------~~~~--~~~---~~~~~~ 235 (326)
|.+.++|..+-+++..+.... -..|..+.++..|.+|+..+.|..||.|+++. ++.. +++ ....+-
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 999999999888776554332 25688899999999999999999999999762 1111 111 112345
Q ss_pred EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccC-cceeEEEECCCCceEEeecCCCcEEE
Q 020461 236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF-GPINALAFNPDGKSFSSGGEDGYVRL 314 (326)
Q Consensus 236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~lat~s~Dg~i~l 314 (326)
++++|+.+|..++.+. ... ..+++|....+..+.-+.|.. .....+.|+|-...+++- +.|.+++
T Consensus 253 k~ccfs~dgeYv~a~s-~~a------------HaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~i 318 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGS-ARA------------HALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYI 318 (405)
T ss_pred hheeecCCccEEEecc-ccc------------eeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEE
Confidence 6888998887766543 222 346677777777777777766 567889999999888877 7899999
Q ss_pred eecC
Q 020461 315 HHFD 318 (326)
Q Consensus 315 ~~~~ 318 (326)
|...
T Consensus 319 w~~~ 322 (405)
T KOG1273|consen 319 WAVV 322 (405)
T ss_pred EEee
Confidence 9753
No 75
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.5e-27 Score=182.41 Aligned_cols=248 Identities=19% Similarity=0.301 Sum_probs=177.2
Q ss_pred ecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCC-CCee-eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461 8 GHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN-GERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (326)
Q Consensus 8 ~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~-~~~~-~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 84 (326)
..++.|.+++||| ...+++++|.|++||+|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3567899999999 456777999999999999987 3443 345679999999999999999999999999999999998
Q ss_pred cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC--cEEE
Q 020461 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--RTII 162 (326)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~ 162 (326)
+....-.++.++..+ .|-+.. ..|+
T Consensus 105 Q~~~v~~Hd~pvkt~-----------------------------------------------------~wv~~~~~~cl~ 131 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTC-----------------------------------------------------HWVPGMNYQCLV 131 (347)
T ss_pred CeeeeeecccceeEE-----------------------------------------------------EEecCCCcceeE
Confidence 765544444444443 333222 3689
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE-e--eccceEEEE
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-V--TERPVNAVT 239 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~--~~~~~~~~~ 239 (326)
||+.|.+||.||.++...+.++.. .+.+.+++. -...++.+..+..|.+++++++...... . ..-.+++++
T Consensus 132 TGSWDKTlKfWD~R~~~pv~t~~L----PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va 205 (347)
T KOG0647|consen 132 TGSWDKTLKFWDTRSSNPVATLQL----PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVA 205 (347)
T ss_pred ecccccceeecccCCCCeeeeeec----cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEE
Confidence 999999999999998877765532 234444443 3457889999999999999875433322 1 234688999
Q ss_pred eCCCCCeeEEecCCCcceeEeeccc--CceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 240 MSPLLDHVVLGGGQDASAVTTTDHR--AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
..++.+..++++-++...+-..|.+ ...+..+ .+... ....+.--.|++|+|+|.-..|+|++.||+..+|+=
T Consensus 206 ~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk----CHR~~-~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 206 CFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK----CHRST-NSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDK 280 (347)
T ss_pred EEecCCceEeeeecceEEEEecCCCCccCceeEE----EeccC-CCCCCceEEecceEeecccceEEEecCCceEEEecc
Confidence 9888888888877777666655543 1111111 00000 001111126899999999999999999999999986
Q ss_pred CC
Q 020461 318 DP 319 (326)
Q Consensus 318 ~~ 319 (326)
|.
T Consensus 281 da 282 (347)
T KOG0647|consen 281 DA 282 (347)
T ss_pred hh
Confidence 53
No 76
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=5.3e-26 Score=188.27 Aligned_cols=247 Identities=32% Similarity=0.523 Sum_probs=191.5
Q ss_pred eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeee
Q 020461 45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIH 123 (326)
Q Consensus 45 ~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (326)
+.++++|.++|.+++|+|+++++++++.|+.+++|++.+++....+.. ..++..+.+.+.+..++++.. +..+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~ 76 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-----DKTIR 76 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC-----CCeEE
Confidence 346789999999999999999999999999999999998876555543 344446777776644443332 22334
Q ss_pred eeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC
Q 020461 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG 203 (326)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~ 203 (326)
++.+.. +.....+..|...+.++.|+|++.++++++.|+.|++||+++++....+. .|...+.+++++|++
T Consensus 77 i~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~ 147 (289)
T cd00200 77 LWDLET------GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---GHTDWVNSVAFSPDG 147 (289)
T ss_pred EEEcCc------ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec---cCCCcEEEEEEcCcC
Confidence 444322 23555667888899999999998888888889999999998776655443 678889999999999
Q ss_pred CeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec
Q 020461 204 SHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG 282 (326)
Q Consensus 204 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 282 (326)
.++++++.|+.|++||+++++.+..+... ..+.++.++|+++.+++++.++ .+.+|+....+.+.
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~--------------~i~i~d~~~~~~~~ 213 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG--------------TIKLWDLSTGKCLG 213 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC--------------cEEEEECCCCceec
Confidence 88888888999999999988887777643 4799999999998887776532 23344444444555
Q ss_pred cccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 283 GVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 283 ~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
.+..|...+.+++|+|++.++++++.||.|++|+++.
T Consensus 214 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 214 TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 5667888999999999999999999999999999875
No 77
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.3e-25 Score=165.23 Aligned_cols=289 Identities=19% Similarity=0.241 Sum_probs=205.3
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCC------C---------CeeeeccCcccceEEEEEcCCCCeEEEEeCCC
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------G---------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ 74 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~------~---------~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~ 74 (326)
...|.+++|+|.|.+.+.||+..+.||-.... + .+.+..+.|.+.|.|.+|+|+|+++++|+.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 35688999999999999999999999863221 1 11233467999999999999999999999999
Q ss_pred cEEEEEccCCcE------EEEEecCCCcceeeeecC----CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461 75 TAKLWNVETGAQ------LFTFNFDSPARSVDFAVG----DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (326)
Q Consensus 75 ~i~~wd~~~~~~------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (326)
+|++.-++...+ +.--.+++.++.+.|..+ ..+.+..+..-.. +.. ...+.+.....+.|
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~----iy~------tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK----IYI------TDCGRGQGFHALSG 181 (350)
T ss_pred eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce----EEE------eecCCCCcceeecC
Confidence 999987654332 111234566666666532 2333332221111 111 12245667778899
Q ss_pred CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccccc---C-cceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET---G-HKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---~-h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~ 220 (326)
|.+-|..+ ++=++.+|++|+.|.+|++||++-..++..+.... + .+..|.+++..|.|.+|++|-.|....+||+
T Consensus 182 htghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 182 HTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 99888765 34457799999999999999998777766543211 1 2356999999999999999999999999999
Q ss_pred CCcceEEEEee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461 221 RTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (326)
Q Consensus 221 ~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d 299 (326)
+.+.+++.+.+ ...+.++-|+|..-.++.+. .|.. +..+|.. -+...+.+.-....|...+-.+.|+|.
T Consensus 261 rg~r~iq~f~phsadir~vrfsp~a~yllt~s-yd~~-ikltdlq--------gdla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS-YDMK-IKLTDLQ--------GDLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred eCCceeeeeCCCccceeEEEeCCCceEEEEec-ccce-EEEeecc--------cchhhcCceEEEEeccCceEEEEecCc
Confidence 99999999864 56799999999766555543 3321 1112211 011222233345678899999999999
Q ss_pred CceEEeecCCCcEEEeecCC
Q 020461 300 GKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 300 ~~~lat~s~Dg~i~l~~~~~ 319 (326)
.-.|++.|.|.++.||-+.+
T Consensus 331 d~sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 331 DFSFISSSADKTATLWALNG 350 (350)
T ss_pred cceeeeccCcceEEEeccCC
Confidence 99999999999999998753
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=3.8e-28 Score=194.95 Aligned_cols=251 Identities=20% Similarity=0.341 Sum_probs=199.9
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
.+..|+..+..+-|-++...|++|+.|..|++|+....+ .+.++.+-.++|..++|.++++++++++.|+.+++|++.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 466799999999999999999999999999999986654 678888989999999999999999999999999999987
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
..+. ..++.||...|+++.|......++
T Consensus 250 ~~r~----------------------------------------------------~~TLsGHtdkVt~ak~~~~~~~vV 277 (459)
T KOG0288|consen 250 SLRL----------------------------------------------------RHTLSGHTDKVTAAKFKLSHSRVV 277 (459)
T ss_pred chhh----------------------------------------------------hhhhcccccceeeehhhcccccee
Confidence 6433 223567778888888776655699
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~ 242 (326)
+|+.|.+|++||+..+.+.+++... ..+..+..+ ...+++|=.|++|++||.++..++...+....+.++..++
T Consensus 278 sgs~DRtiK~WDl~k~~C~kt~l~~----S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~ 351 (459)
T KOG0288|consen 278 SGSADRTIKLWDLQKAYCSKTVLPG----SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSM 351 (459)
T ss_pred eccccchhhhhhhhhhheecccccc----ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeecc
Confidence 9999999999999988887765432 334445444 4568899999999999999999999999888999999999
Q ss_pred CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCce
Q 020461 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF 322 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~ 322 (326)
++..+++++.+|. +...|.|......-+ . .. +...+ ...+.+.||||+.|+|+||.||.|.||++...-+
T Consensus 352 ~g~~lLsssRDdt--l~viDlRt~eI~~~~-s---A~--g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKl 421 (459)
T KOG0288|consen 352 DGLELLSSSRDDT--LKVIDLRTKEIRQTF-S---AE--GFKCA--SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKL 421 (459)
T ss_pred CCeEEeeecCCCc--eeeeecccccEEEEe-e---cc--ccccc--cccceeEECCCCceeeeccCCCcEEEEEccCceE
Confidence 9999998866664 334555543321111 0 00 11112 3489999999999999999999999999876654
Q ss_pred e
Q 020461 323 N 323 (326)
Q Consensus 323 ~ 323 (326)
.
T Consensus 422 E 422 (459)
T KOG0288|consen 422 E 422 (459)
T ss_pred E
Confidence 3
No 79
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.2e-26 Score=188.87 Aligned_cols=257 Identities=21% Similarity=0.311 Sum_probs=192.4
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeee----e------------c--cCcccceEEEEEcCCC
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG----T------------Y--RGHNGAVWCCDVSRDS 64 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~----~------------~--~~h~~~V~~~~~~~~~ 64 (326)
.++...|.-++.+++++|++++.++++.|++|.-|++.++.... . . ++|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 36778899999999999999999999999999999988776331 1 1 2788899999999999
Q ss_pred CeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (326)
Q Consensus 65 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (326)
++|++|+.|..|.||+.++.+.+. .+++
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~----------------------------------------------------~~~g 242 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVK----------------------------------------------------VFKG 242 (479)
T ss_pred cEEEecCCCceEEEecCcccchhh----------------------------------------------------cccc
Confidence 999999999999999998765432 2457
Q ss_pred CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (326)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~ 224 (326)
|.+.|.+++|-.....+++++.|++|++|++.....+.+ ..+|+..|.++....-...+-+|+.|.++++|++- +
T Consensus 243 hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet---lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~--e 317 (479)
T KOG0299|consen 243 HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET---LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP--E 317 (479)
T ss_pred cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH---HhCCccceeeechhcccceEEeccccceeEEEecc--c
Confidence 777888888877777899999999999999987655544 35899999999988887777777799999999993 3
Q ss_pred eEEEE--eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec---cccccCcceeEEEECCC
Q 020461 225 LIKTY--VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG---GVKGHFGPINALAFNPD 299 (326)
Q Consensus 225 ~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~v~~s~d 299 (326)
..+.+ .+...+.|++|-.+ .++++++.++. ++.|+....+. ++.......+. ....+..+|++++..|.
T Consensus 318 esqlifrg~~~sidcv~~In~-~HfvsGSdnG~--IaLWs~~KKkp---lf~~~~AHgv~~~~~~~~~~~Witsla~i~~ 391 (479)
T KOG0299|consen 318 ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS--IALWSLLKKKP---LFTSRLAHGVIPELDPVNGNFWITSLAVIPG 391 (479)
T ss_pred cceeeeeCCCCCeeeEEEecc-cceeeccCCce--EEEeeecccCc---eeEeeccccccCCccccccccceeeeEeccc
Confidence 33332 23457889998654 55666544443 33333222111 11111111111 11233459999999999
Q ss_pred CceEEeecCCCcEEEeecCCCce
Q 020461 300 GKSFSSGGEDGYVRLHHFDPDYF 322 (326)
Q Consensus 300 ~~~lat~s~Dg~i~l~~~~~~~~ 322 (326)
..++|+||.+|.||||...+++=
T Consensus 392 sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 392 SDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred CceEEecCCCCceEEEEecCCcc
Confidence 99999999999999999998853
No 80
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.2e-27 Score=174.82 Aligned_cols=241 Identities=22% Similarity=0.337 Sum_probs=180.2
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
.+..||...|..++.+.|...+++|+.|..+.+||+++|+.++.|++|.++|+.+.|+.+...+++||.|.++|+||.+.
T Consensus 53 ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS 132 (307)
T KOG0316|consen 53 KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS 132 (307)
T ss_pred eeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
... .|+..+ ..-...|.++... +..|+.
T Consensus 133 ~s~-------ePiQil-------------------------------------------dea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 133 RSF-------EPIQIL-------------------------------------------DEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred CCC-------Cccchh-------------------------------------------hhhcCceeEEEec--ccEEEe
Confidence 321 111100 0001112222221 346899
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccc---eEEEEe
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP---VNAVTM 240 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~ 240 (326)
|+.||+++.||++.|+...... ..+|+++.+++|++..+.++.|+++++-|-.+++++..+..... -...++
T Consensus 161 GS~DGtvRtydiR~G~l~sDy~-----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l 235 (307)
T KOG0316|consen 161 GSVDGTVRTYDIRKGTLSSDYF-----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL 235 (307)
T ss_pred eccCCcEEEEEeecceeehhhc-----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence 9999999999999998776542 46899999999999999999999999999999999988764322 122344
Q ss_pred CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcc-eeEEEECCCCceEEeecCCCcEEEee
Q 020461 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-INALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
+....++ +++++|+ .+.+|+......+..+.-|... |.+++++|.-.-|.++. ++.+.+|.
T Consensus 236 ~qsdthV-~sgSEDG-------------~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 236 NQSDTHV-FSGSEDG-------------KVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred cccceeE-EeccCCc-------------eEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence 4444444 4455554 2345665555445555556555 79999999887777665 44455554
No 81
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.5e-27 Score=176.75 Aligned_cols=255 Identities=19% Similarity=0.285 Sum_probs=189.1
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC---CeeeeccCcccceEEEEEcC--CCCeEEEEeCCCcEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKL 78 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~---~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~d~~i~~ 78 (326)
++...|++-|..+..+-.|++||+|++|++|+|+...+. ..+.++.||.++|+.++|.. -|.+|++++.||+|.+
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 566789999999999999999999999999999988654 46789999999999999965 6899999999999999
Q ss_pred EEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (326)
Q Consensus 79 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (326)
|.-++++=. .......|.+.|++++|-|.+
T Consensus 85 Wke~~g~w~--------------------------------------------------k~~e~~~h~~SVNsV~waphe 114 (299)
T KOG1332|consen 85 WKEENGRWT--------------------------------------------------KAYEHAAHSASVNSVAWAPHE 114 (299)
T ss_pred EecCCCchh--------------------------------------------------hhhhhhhhcccceeecccccc
Confidence 987655210 111234678889999998865
Q ss_pred --cEEEEeeCCCcEEEEECCCC-ccccccccccCcceeeEEEEEcCC---C-----------CeEEEEeCCCeEEEeecC
Q 020461 159 --RTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAAD---G-----------SHFLTGSLDKSAKLWDAR 221 (326)
Q Consensus 159 --~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~---~-----------~~l~s~s~dg~i~iwd~~ 221 (326)
-.|++++.||.|.+.+.+.. ..... .....|.-.|++++|.|. | ..|++|+.|..|+||+..
T Consensus 115 ygl~LacasSDG~vsvl~~~~~g~w~t~-ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~ 193 (299)
T KOG1332|consen 115 YGLLLACASSDGKVSVLTYDSSGGWTTS-KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD 193 (299)
T ss_pred cceEEEEeeCCCcEEEEEEcCCCCccch-hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence 47889999999999998654 22222 233579999999999886 4 569999999999999988
Q ss_pred Ccce--EEEEe-eccceEEEEeCCCCC---eeEEecCCCccee-EeecccCceeeeEeecccceeeeccccccCcceeEE
Q 020461 222 TLEL--IKTYV-TERPVNAVTMSPLLD---HVVLGGGQDASAV-TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 294 (326)
Q Consensus 222 ~~~~--~~~~~-~~~~~~~~~~s~~~~---~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 294 (326)
+.+- .+.+. +..-++.+++.|... ..+++.++|+..+ ...+..... |. ...+......++.+
T Consensus 194 ~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~-----wk------~tll~~f~~~~w~v 262 (299)
T KOG1332|consen 194 SDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP-----WK------KTLLEEFPDVVWRV 262 (299)
T ss_pred CcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc-----cc------ccccccCCcceEEE
Confidence 7522 22222 345688899998753 3455556665433 222211111 11 11222344679999
Q ss_pred EECCCCceEEeecCCCcEEEeecCCC
Q 020461 295 AFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 295 ~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.||+.|..||.++.|+.|.+|.=.-+
T Consensus 263 SWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 263 SWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEeccccEEEEecCCcEEEEEEeCCC
Confidence 99999999999999999999975443
No 82
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=1.5e-25 Score=210.19 Aligned_cols=235 Identities=17% Similarity=0.243 Sum_probs=180.4
Q ss_pred ecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCCc
Q 020461 8 GHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 8 ~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
.+...+.+++|++. +++|++++.|++|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+.++.
T Consensus 530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 34567899999874 78999999999999999999999999999999999999997 78899999999999999999988
Q ss_pred EEEEEecCCCcceeeeec-CCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 86 QLFTFNFDSPARSVDFAV-GDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
.+..+.....+.++.+.+ ... ++..+.+ ..+.+|++... ......+.+|...|.++.|. ++..|++
T Consensus 610 ~~~~~~~~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~-----~~~~~~~~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 610 SIGTIKTKANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNP-----KLPLCTMIGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred EEEEEecCCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCC-----CccceEecCCCCCEEEEEEe-CCCEEEE
Confidence 877776655666677753 233 3333333 34455554321 12345667899999999997 6789999
Q ss_pred eeCCCcEEEEECCCCcc---ccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe----------
Q 020461 164 AGEDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---------- 230 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~---~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------- 230 (326)
++.|++|++||++.+.. ...+....+|...+.++++++++.+|++|+.|++|++|+......+..+.
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~ 757 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL 757 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccc
Confidence 99999999999975321 11122335788899999999999999999999999999987654433221
Q ss_pred ----eccceEEEEeCCCCCeeEEecCCC
Q 020461 231 ----TERPVNAVTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 231 ----~~~~~~~~~~s~~~~~~~~~~~~~ 254 (326)
....+.+++|+|++..+++++.++
T Consensus 758 ~~~~~~~~V~~v~ws~~~~~lva~~~dG 785 (793)
T PLN00181 758 EVDDASQFISSVCWRGQSSTLVAANSTG 785 (793)
T ss_pred ccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence 123589999999998877765543
No 83
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=4.1e-26 Score=177.03 Aligned_cols=250 Identities=18% Similarity=0.268 Sum_probs=183.0
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
..++.|..+.|+|.++.|+.++.||++++|+....+....+ .|.+++.+++|.++ ..+++|+.||.|+++|+++++..
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce
Confidence 34678999999999999999999999999999877655555 47899999999874 46889999999999999887543
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 167 (326)
.. -.|..+|.++.+.+....+++||+|
T Consensus 89 ~i-----------------------------------------------------gth~~~i~ci~~~~~~~~vIsgsWD 115 (323)
T KOG1036|consen 89 QI-----------------------------------------------------GTHDEGIRCIEYSYEVGCVISGSWD 115 (323)
T ss_pred ee-----------------------------------------------------ccCCCceEEEEeeccCCeEEEcccC
Confidence 22 1355667777777777789999999
Q ss_pred CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe---eccceEEEEeCCCC
Q 020461 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMSPLL 244 (326)
Q Consensus 168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~s~~~ 244 (326)
++|++||.+.......+. ....|.++... +..|+.|+.|..+.+||+++.+...+.. ...+++++++-|.+
T Consensus 116 ~~ik~wD~R~~~~~~~~d----~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~ 189 (323)
T KOG1036|consen 116 KTIKFWDPRNKVVVGTFD----QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG 189 (323)
T ss_pred ccEEEEeccccccccccc----cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC
Confidence 999999998644443332 23466666654 5689999999999999999876544332 23578899999988
Q ss_pred CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
...+++.-++..++..+|.+......++.-..+.+.-.. ..---+|++|+|+|--+.||||+.||.|.+|+..+
T Consensus 190 eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~-~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 190 EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD-TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC-ceEEEEeceeEeccccceEEecCCCceEEEccCcc
Confidence 777877766666666666552111111111111110000 00113899999999999999999999999998754
No 84
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=181.61 Aligned_cols=239 Identities=19% Similarity=0.240 Sum_probs=167.1
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCee-------------------------------------
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL------------------------------------- 45 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~------------------------------------- 45 (326)
+-.+.+|++.|+++.||.||.+||||..+|.|+||...++...
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence 4578899999999999999999999999999999988765332
Q ss_pred -----eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecC--CCcceeeeecCCeEEE-EEcCcc-c
Q 020461 46 -----GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAV-ITTDPF-M 116 (326)
Q Consensus 46 -----~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~-~ 116 (326)
+.+.||+.++++-.|.|+|++++++..||+|++||+.++.+.+.+... .+..++.+......+. +..+.. .
T Consensus 179 ~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~ 258 (399)
T KOG0296|consen 179 SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVAC 258 (399)
T ss_pred CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEE
Confidence 224689999999999999999999999999999999999988877521 1122222221111111 111100 0
Q ss_pred eece-eeeeeeeccCCCCCCCceEEEeccCccc---eeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcce
Q 020461 117 ELNS-AIHVKRIARDPADQGGESVLILKGPQGR---INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK 192 (326)
Q Consensus 117 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~ 192 (326)
..+. ..++....+. +. ......+... |-.+.++..-+..++|+-||+|.|||+.+.+.... ..|+.
T Consensus 259 ~~~~~sgKVv~~~n~----~~--~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~----c~he~ 328 (399)
T KOG0296|consen 259 GVNNGSGKVVNCNNG----TV--PELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI----CEHED 328 (399)
T ss_pred EEccccceEEEecCC----CC--ccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee----ccCCC
Confidence 0000 0011100000 00 0001122223 34444555567889999999999999987655433 35888
Q ss_pred eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecC
Q 020461 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~ 252 (326)
.|+.+.|.+ ..+|++++.||.|+.||.|+|+++..+. +...|.+.+++|+.+.+++++.
T Consensus 329 ~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 329 GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence 899999999 6799999999999999999999999986 4568999999999887776654
No 85
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.5e-26 Score=186.70 Aligned_cols=267 Identities=22% Similarity=0.316 Sum_probs=194.5
Q ss_pred eecCCceeEEEEccCC-CEEEeecCCCCeEEEecCCCCe----------eeeccCcccceEEEEEcCCCC-eEEEEeCCC
Q 020461 7 KGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGER----------LGTYRGHNGAVWCCDVSRDSM-TLITGSADQ 74 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~----------~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~ 74 (326)
--|.+.|+.+.+-|+. +++++.+..+.|.|||..+..- -..+.+|++.=.+++|++... .|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 3488899999999975 5788889999999999754321 126789998777899988644 799999999
Q ss_pred cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (326)
Q Consensus 75 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (326)
+|.+||++..... . ....+...+.+|...|..++|
T Consensus 201 ~i~lwdi~~~~~~------~---------------------------------------~~~~p~~~~~~h~~~VeDV~~ 235 (422)
T KOG0264|consen 201 TICLWDINAESKE------D---------------------------------------KVVDPKTIFSGHEDVVEDVAW 235 (422)
T ss_pred cEEEEeccccccC------C---------------------------------------ccccceEEeecCCcceehhhc
Confidence 9999999753210 0 011245567899999999999
Q ss_pred ecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCc-ceEEEEe-
Q 020461 155 GPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTL-ELIKTYV- 230 (326)
Q Consensus 155 ~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~- 230 (326)
++.. ..|++++.|+.+.|||++++ .........+|.+.+.|++|+| ++..|||||.|++|++||+|+. +++.++.
T Consensus 236 h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~ 314 (422)
T KOG0264|consen 236 HPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG 314 (422)
T ss_pred cccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC
Confidence 9976 47789999999999999963 2222223458999999999998 4567889999999999999974 4455554
Q ss_pred eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecc---cceeeeccccccCcceeEEEECCCCce-EEee
Q 020461 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK---ILQEEIGGVKGHFGPINALAFNPDGKS-FSSG 306 (326)
Q Consensus 231 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~s~d~~~-lat~ 306 (326)
+...+..+.|+|..+.++++++.|... -+||...-.- .+-++. ...+.+=.-.||.+.|..+.|+|.... ++|.
T Consensus 315 H~dev~~V~WSPh~etvLASSg~D~rl-~vWDls~ig~-eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv 392 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNETVLASSGTDRRL-NVWDLSRIGE-EQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV 392 (422)
T ss_pred CCcceEEEEeCCCCCceeEecccCCcE-EEEecccccc-ccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEe
Confidence 456799999999999998888777642 2333211000 000000 011111123589999999999998875 7999
Q ss_pred cCCCcEEEeecCCCc
Q 020461 307 GEDGYVRLHHFDPDY 321 (326)
Q Consensus 307 s~Dg~i~l~~~~~~~ 321 (326)
++|+.+.||+.-...
T Consensus 393 aeDN~LqIW~~s~~i 407 (422)
T KOG0264|consen 393 AEDNILQIWQMAENI 407 (422)
T ss_pred cCCceEEEeeccccc
Confidence 999999999986443
No 86
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=184.96 Aligned_cols=236 Identities=22% Similarity=0.372 Sum_probs=176.6
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
.++.||..+|.++.||||.++|++|+.|-.+++||+.+|++...+.. |.-.+.+++|.||+..+++|+.|+++..||++
T Consensus 263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 46889999999999999999999999999999999999999887753 45679999999999999999999999999997
Q ss_pred CCcEEEEEecC--CCcceeeeecCCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461 83 TGAQLFTFNFD--SPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (326)
Q Consensus 83 ~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (326)
... ...++.- ..+..+...++++ +..+..++.+.+.... ++ .. ..+-..+.+|++...|.+++
T Consensus 343 gn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e-----~~-------~d-r~lise~~~its~~iS~d~k 408 (519)
T KOG0293|consen 343 GNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE-----AR-------VD-RGLISEEQPITSFSISKDGK 408 (519)
T ss_pred cch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechh-----hh-------hh-hccccccCceeEEEEcCCCc
Confidence 643 2333321 2233444444444 4444444332221110 00 00 00223456899999999999
Q ss_pred EEEEeeCCCcEEEEECCCCccccccccccCccee---eEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccce
Q 020461 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKT---ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPV 235 (326)
Q Consensus 160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~---v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~ 235 (326)
++++--.+..|++||++..+.++... ||... |.++.--.+..++++||+|+.|+||+.++++++..+. +...+
T Consensus 409 ~~LvnL~~qei~LWDl~e~~lv~kY~---Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~v 485 (519)
T KOG0293|consen 409 LALVNLQDQEIHLWDLEENKLVRKYF---GHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTV 485 (519)
T ss_pred EEEEEcccCeeEEeecchhhHHHHhh---cccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCccee
Confidence 99999999999999999776665543 55432 3333323456799999999999999999999999986 45789
Q ss_pred EEEEeCCCCCeeEEecCCCcc
Q 020461 236 NAVTMSPLLDHVVLGGGQDAS 256 (326)
Q Consensus 236 ~~~~~s~~~~~~~~~~~~~~~ 256 (326)
++++++|.....++++++|+.
T Consensus 486 NcVswNP~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 486 NCVSWNPADPEMFASASDDGT 506 (519)
T ss_pred eEEecCCCCHHHhhccCCCCe
Confidence 999999999998888887763
No 87
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=3.3e-25 Score=192.30 Aligned_cols=304 Identities=15% Similarity=0.222 Sum_probs=222.7
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEccC
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVET 83 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~ 83 (326)
.++++...|+++--+|--..+|.|..+|+|.|+|++.++.+.+|+...++|++++|..||+ .+++|+..|.+.+||++.
T Consensus 197 ~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~ 276 (910)
T KOG1539|consen 197 TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK 276 (910)
T ss_pred EecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence 5678889999999999999999999999999999999999999987779999999999998 467777889999999988
Q ss_pred CcEEEEEe--cCCCcceeeeecCCeEEEEEc-Cccceec----------------------eeee--------eeeeccC
Q 020461 84 GAQLFTFN--FDSPARSVDFAVGDKLAVITT-DPFMELN----------------------SAIH--------VKRIARD 130 (326)
Q Consensus 84 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------~~~~--------~~~~~~~ 130 (326)
.+...... +.+.+....+.+++.+.+... +..+.++ ..+. ......+
T Consensus 277 kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~D 356 (910)
T KOG1539|consen 277 KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQD 356 (910)
T ss_pred CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccC
Confidence 77655443 223333333333332222111 0000000 0000 0000000
Q ss_pred C---------------------------CC--------------------------------CCCceEEEec--------
Q 020461 131 P---------------------------AD--------------------------------QGGESVLILK-------- 143 (326)
Q Consensus 131 ~---------------------------~~--------------------------------~~~~~~~~~~-------- 143 (326)
+ .. .+.....++.
T Consensus 357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~ 436 (910)
T KOG1539|consen 357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR 436 (910)
T ss_pred cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc
Confidence 0 00 0000000110
Q ss_pred ---c------CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCe
Q 020461 144 ---G------PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214 (326)
Q Consensus 144 ---~------~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~ 214 (326)
. ....+++++.++-|++.+.|...|+|-++++.+|-....+.....|..+|+.++.+..++.+++++.+|.
T Consensus 437 ~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi 516 (910)
T KOG1539|consen 437 HVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI 516 (910)
T ss_pred EEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce
Confidence 1 1245778888999999999999999999999999777776556789999999999999999999999999
Q ss_pred EEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEE
Q 020461 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 294 (326)
Q Consensus 215 i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 294 (326)
+++||.+....+.++.....+.++..+...+.++++-. .+.+.++|..+..-+..+.||...|+++
T Consensus 517 lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d--------------df~I~vvD~~t~kvvR~f~gh~nritd~ 582 (910)
T KOG1539|consen 517 LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD--------------DFSIRVVDVVTRKVVREFWGHGNRITDM 582 (910)
T ss_pred EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC--------------ceeEEEEEchhhhhhHHhhccccceeee
Confidence 99999999998888888888888888876655554322 2356667766666677788999999999
Q ss_pred EECCCCceEEeecCCCcEEEeecCCCce
Q 020461 295 AFNPDGKSFSSGGEDGYVRLHHFDPDYF 322 (326)
Q Consensus 295 ~~s~d~~~lat~s~Dg~i~l~~~~~~~~ 322 (326)
+|||||++|++++.|++||+|++....+
T Consensus 583 ~FS~DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 583 TFSPDGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred EeCCCCcEEEEeecCCcEEEEeccCcce
Confidence 9999999999999999999999987654
No 88
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9e-26 Score=175.10 Aligned_cols=277 Identities=19% Similarity=0.310 Sum_probs=187.8
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC----CeeeeccCcccceEEEEEcC--CCCeEEEEeCCCcEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAK 77 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~----~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~d~~i~ 77 (326)
.+..+|.+-|.++.|++.|+++|+|+.|++++|||..+. .+....+.|.+.|+.+.|.+ -|+.+++++.|++++
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 456789999999999999999999999999999996433 45677899999999999965 389999999999999
Q ss_pred EEEccC------CcE---EEEE-ecCCCcceeeeec---CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceE-EEec
Q 020461 78 LWNVET------GAQ---LFTF-NFDSPARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILK 143 (326)
Q Consensus 78 ~wd~~~------~~~---~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 143 (326)
+|.=.. +.. ..++ ...+.+..++|.| +-+++.+..++.+.+........+.+.........+ ....
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 111 1111 2234566677776 345666666666555444333322222111100000 0112
Q ss_pred cCccceeEEEEecC---CcEEEEeeCC-----CcEEEEECCCCc-cccccccccCcceeeEEEEEcCCC----CeEEEEe
Q 020461 144 GPQGRINRAVWGPL---NRTIISAGED-----AIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADG----SHFLTGS 210 (326)
Q Consensus 144 ~~~~~i~~~~~~~~---~~~l~s~~~d-----~~i~~wd~~~~~-~~~~~~~~~~h~~~v~~v~~s~~~----~~l~s~s 210 (326)
.+..+..|+.|+|. .++|+.|+.+ +.++||....+. ....+....+|..+|+.++|.|+- ..||+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 34556778899874 3578888776 478999875433 444555667999999999999963 3599999
Q ss_pred CCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcc
Q 020461 211 LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 290 (326)
Q Consensus 211 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 290 (326)
.|| |+||.++..... +.. +.+. ++.. . .. ...+.+..+.+|++.
T Consensus 247 kDg-v~I~~v~~~~s~--i~~-------------ee~~-~~~~------~-----~~--------l~v~~vs~~~~H~~~ 290 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSA--IEE-------------EEVL-APDL------M-----TD--------LPVEKVSELDDHNGE 290 (361)
T ss_pred cCc-EEEEEEeeccch--hhh-------------hccc-CCCC------c-----cc--------cceEEeeeccCCCCc
Confidence 999 999998642210 000 0000 0000 0 00 123445667899999
Q ss_pred eeEEEECCCCceEEeecCCCcEEEee
Q 020461 291 INALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 291 v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
|+.+.|+-.|..|++.+.||+||+|.
T Consensus 291 VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 291 VWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEEEEeeeeeEEeecCCCceeeehh
Confidence 99999999999999999999999986
No 89
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.9e-25 Score=172.51 Aligned_cols=292 Identities=16% Similarity=0.253 Sum_probs=203.9
Q ss_pred eeeeecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCCCe------e---------eeccCcccceEEEEEcC-CCCe
Q 020461 4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGER------L---------GTYRGHNGAVWCCDVSR-DSMT 66 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~------~---------~~~~~h~~~V~~~~~~~-~~~~ 66 (326)
-+.+.|.+.|+.++..+ .|+++++|+.||.+.+||+++..- + ..-.+|.-.|..+.|-| |.-.
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 35677999999999997 589999999999999999976431 1 01136777899999988 4457
Q ss_pred EEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecC---CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec
Q 020461 67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 143 (326)
Q Consensus 67 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (326)
+.++|.|.++|+||.++-+....|.++..+-+..++|- .-+++++.... .+.+-++ .+|.....+.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~-----~VrLCDi------~SGs~sH~Ls 185 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDV-----QVRLCDI------ASGSFSHTLS 185 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCC-----cEEEEec------cCCcceeeec
Confidence 88899999999999999988888888776665555542 22333332211 1111122 3566778899
Q ss_pred cCccceeEEEEecCCc-EEEEeeCCCcEEEEECCCC-ccccc-----------cccccCcceeeEEEEEcCCCCeEEEEe
Q 020461 144 GPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETG-KLLKE-----------SDKETGHKKTITSLAKAADGSHFLTGS 210 (326)
Q Consensus 144 ~~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~-~~~~~-----------~~~~~~h~~~v~~v~~s~~~~~l~s~s 210 (326)
||...|..+.|+|... .|++|+.||+|++||++.. .++.. ......|.+.+..++|+.++.++++.+
T Consensus 186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 9999999999999877 4579999999999999754 22221 112457889999999999999999999
Q ss_pred CCCeEEEeecCCcceEEEEeec---cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccccc
Q 020461 211 LDKSAKLWDARTLELIKTYVTE---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 287 (326)
Q Consensus 211 ~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h 287 (326)
.|..+++|+..+|+....-..+ ..-...+++ +-++..+ .++..... -.+.++....++.+..+.+|
T Consensus 266 td~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~------~~~~~s~-vfv~~p~~----~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 266 TDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH------IQSMDSD-VFVLFPND----GSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred CccceEEeecccCcccccccccccccccccceEE------Eeecccc-eEEEEecC----CeEEEEEccCceEEEeeecc
Confidence 9999999999887543221110 001111111 0011111 11111000 12344555556667778889
Q ss_pred CcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 288 FGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 288 ~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
...|++.+|-|+=+...+|+.|+.|..|..
T Consensus 335 ~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 335 LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cceeeEEeecCchhhhhccccCCccccccc
Confidence 899999999999999999999999999875
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=8.7e-27 Score=175.85 Aligned_cols=202 Identities=18% Similarity=0.343 Sum_probs=166.7
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC-eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 86 (326)
.|+.-|.+++|+.|.++|++|+.+..+||||++..+ ...++.+|++.|..+-|....+.++++..|++||+||..+++.
T Consensus 98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE 177 (334)
T ss_pred hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence 478889999999999999999999999999988664 5668899999999999998888999999999999999999999
Q ss_pred EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (326)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 166 (326)
+..+.+..++.++.++.++.++...-.. .+.+|+... -..+... ...-.|.+...+|+...++.|++
T Consensus 178 v~sL~~~s~VtSlEvs~dG~ilTia~gs------sV~Fwdaks------f~~lKs~-k~P~nV~SASL~P~k~~fVaGge 244 (334)
T KOG0278|consen 178 VQSLEFNSPVTSLEVSQDGRILTIAYGS------SVKFWDAKS------FGLLKSY-KMPCNVESASLHPKKEFFVAGGE 244 (334)
T ss_pred EEEEecCCCCcceeeccCCCEEEEecCc------eeEEecccc------ccceeec-cCccccccccccCCCceEEecCc
Confidence 9999999999999999877766544332 222232211 0111111 22346788899999999999999
Q ss_pred CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (326)
Q Consensus 167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~ 224 (326)
|..++.||..+++.+... ..+|-++|.|+.|+|+|...++||.||+|++|.+..++
T Consensus 245 d~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 245 DFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999999999999876653 35899999999999999999999999999999876543
No 91
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.1e-25 Score=170.76 Aligned_cols=233 Identities=15% Similarity=0.201 Sum_probs=192.5
Q ss_pred eeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..++|.+.|-.++|+|. ..++++++.|.+|++||...++++.......+.++ +.|+|+|++++.++.|..|-..|.++
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~ 137 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDART 137 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecc
Confidence 46789999999999975 67999999999999999999999988876555554 67999999999999999999999998
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
.+.....++....+.+.|...+.+.++..+ .+.+++... .+.+++..++.|.....++.|+|+|++|++
T Consensus 138 ~~~~~~~~~~~e~ne~~w~~~nd~Fflt~G-----lG~v~ILsy------psLkpv~si~AH~snCicI~f~p~GryfA~ 206 (313)
T KOG1407|consen 138 YKIVNEEQFKFEVNEISWNNSNDLFFLTNG-----LGCVEILSY------PSLKPVQSIKAHPSNCICIEFDPDGRYFAT 206 (313)
T ss_pred cceeehhcccceeeeeeecCCCCEEEEecC-----CceEEEEec------cccccccccccCCcceEEEEECCCCceEee
Confidence 888777777666677777755555544332 111222211 134678888999999999999999999999
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCC
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPL 243 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~ 243 (326)
|+.|..+-+||+..--+.+.+. .+..+|..+.||-||++||+||+|..|-|=++++|..+.++....+.+.++|+|.
T Consensus 207 GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 207 GSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPK 283 (313)
T ss_pred ccccceeeccChhHhhhheeec---cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCC
Confidence 9999999999998665555553 4678999999999999999999999999999999999999999999999999998
Q ss_pred CCeeEEecC
Q 020461 244 LDHVVLGGG 252 (326)
Q Consensus 244 ~~~~~~~~~ 252 (326)
...++.+..
T Consensus 284 ~~LLAyA~d 292 (313)
T KOG1407|consen 284 RPLLAYACD 292 (313)
T ss_pred CceeeEEec
Confidence 777766544
No 92
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.9e-26 Score=185.29 Aligned_cols=234 Identities=22% Similarity=0.353 Sum_probs=182.4
Q ss_pred cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCcEE
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
.++.+++++|-.||++|++|...|.|+|+|.++...+..+.+|+.+|..+.|+|++ ..|++|+.|+.+++||+.++..
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v- 145 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV- 145 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-
Confidence 45678999999999999999999999999977666778899999999999999965 4688899999999999976532
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGE 166 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~ 166 (326)
...+.+|...|.+.+++|... .++|||-
T Consensus 146 ---------------------------------------------------~~~l~~htDYVR~g~~~~~~~hivvtGsY 174 (487)
T KOG0310|consen 146 ---------------------------------------------------QAELSGHTDYVRCGDISPANDHIVVTGSY 174 (487)
T ss_pred ---------------------------------------------------EEEecCCcceeEeeccccCCCeEEEecCC
Confidence 123457888899999999755 7899999
Q ss_pred CCcEEEEECCCC-ccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc-ceEEEEe-eccceEEEEeCCC
Q 020461 167 DAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNAVTMSPL 243 (326)
Q Consensus 167 d~~i~~wd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~~~~~~~s~~ 243 (326)
||+|++||+++. ..+.+ ..|..+|..+.+-|.|..+++++- ..+++||+-+| +.+.... +...+.|+.+..+
T Consensus 175 Dg~vrl~DtR~~~~~v~e----lnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVE----LNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASD 249 (487)
T ss_pred CceEEEEEeccCCceeEE----ecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecC
Confidence 999999999876 33333 358899999999999999999885 47999999854 4444443 6778999999988
Q ss_pred CCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE
Q 020461 244 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314 (326)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l 314 (326)
+..+++++ -|+ . .+.|+...-+-+..+. -.++|.+++.+||+..++.|-.||.+-+
T Consensus 250 ~~rLlS~s-LD~--------~-----VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 250 STRLLSGS-LDR--------H-----VKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred CceEeecc-ccc--------c-----eEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence 76666543 332 1 2233322222222222 3579999999999999999999998866
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8e-27 Score=197.20 Aligned_cols=257 Identities=25% Similarity=0.408 Sum_probs=193.8
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC--CeeeeccCcccceEEEEE-cCCCCeEEEEeCCCcEEEEEcc
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDV-SRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~--~~~~~~~~h~~~V~~~~~-~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
++.|.+=|..+....+|+.|+|||.|.+|++|+...+ -+..++..|...|.|++. .++...++|||.|+.|.+||++
T Consensus 69 me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin 148 (735)
T KOG0308|consen 69 MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN 148 (735)
T ss_pred hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence 4556666777777888999999999999999998877 578889999999999999 7788899999999999999999
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE-eccCccceeEEEEecCCcEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l 161 (326)
++.......++. ..... ..|+..+|++++.++.+-.|
T Consensus 149 ~~~~~l~~s~n~------------------------------------------~t~~sl~sG~k~siYSLA~N~t~t~i 186 (735)
T KOG0308|consen 149 TGTATLVASFNN------------------------------------------VTVNSLGSGPKDSIYSLAMNQTGTII 186 (735)
T ss_pred Ccchhhhhhccc------------------------------------------cccccCCCCCccceeeeecCCcceEE
Confidence 874311111100 00000 12677889999999999999
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-ccceEEEEe
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTM 240 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~ 240 (326)
++|+..+.|++||.++++.+..+ .||...|.++..+.||..++++|.||+|++||++.+.|+.++.. ...+.++..
T Consensus 187 vsGgtek~lr~wDprt~~kimkL---rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~ 263 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKL---RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQS 263 (735)
T ss_pred EecCcccceEEeccccccceeee---eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEee
Confidence 99999999999999988766544 49999999999999999999999999999999999999999864 456889999
Q ss_pred CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
+|+...++.++.+.. +..+|.+...-...++. ...+|..+..+-+...+=+++.|+.|+=|..++.
T Consensus 264 ~~sf~~vYsG~rd~~--i~~Tdl~n~~~~tlick------------~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 264 SPSFTHVYSGGRDGN--IYRTDLRNPAKSTLICK------------EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred CCCcceEEecCCCCc--EEecccCCchhheEeec------------CCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 999888887765544 33344443221222222 2234555555533333344677888888877765
Q ss_pred c
Q 020461 321 Y 321 (326)
Q Consensus 321 ~ 321 (326)
+
T Consensus 330 ~ 330 (735)
T KOG0308|consen 330 I 330 (735)
T ss_pred c
Confidence 4
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.7e-25 Score=194.69 Aligned_cols=215 Identities=27% Similarity=0.462 Sum_probs=178.0
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
+.||.+.|.+++|..-+..|++|+.|.++++||..+|++...+.+|+..|.++... ..++++|+.|.+|++|+++++.
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcc
Confidence 88999999999999878899999999999999999999999999999999999765 3478889999999999999999
Q ss_pred EEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461 86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (326)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 164 (326)
.+..+. +..+++++... ++.++..+.+ ..+.+|++. .++.+..++||..+|.++.+.+. ..+++|
T Consensus 323 ~l~l~~~h~~~V~~v~~~-~~~lvsgs~d------~~v~VW~~~------~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sg 388 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD-EPLLVSGSYD------GTVKVWDPR------TGKCLKSLSGHTGRVYSLIVDSE-NRLLSG 388 (537)
T ss_pred eEEEeccccccEEEEEec-CCEEEEEecC------ceEEEEEhh------hceeeeeecCCcceEEEEEecCc-ceEEee
Confidence 998887 77788887766 4444444333 244555553 46788999999999999988775 789999
Q ss_pred eCCCcEEEEECCCC-ccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec--cceEEEEeC
Q 020461 165 GEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--RPVNAVTMS 241 (326)
Q Consensus 165 ~~d~~i~~wd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~s 241 (326)
+.|++|++||++++ +++..+ .+|...+..+. ..+++|++++.|++|++||..++++++.+... ..+.+++..
T Consensus 389 s~D~~IkvWdl~~~~~c~~tl---~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 389 SLDTTIKVWDLRTKRKCIHTL---QGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred eeccceEeecCCchhhhhhhh---cCCcccccccc--cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC
Confidence 99999999999998 776655 36777775554 45678999999999999999999999998763 445555554
No 95
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=200.12 Aligned_cols=264 Identities=18% Similarity=0.228 Sum_probs=171.3
Q ss_pred eecc-CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCc------ccee
Q 020461 46 GTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP------FMEL 118 (326)
Q Consensus 46 ~~~~-~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 118 (326)
+.+. +|.+.||++.||+||+|||+||.|+.||||.+...+....-.................-...... ....
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3456 89999999999999999999999999999998764331100000000000000000000000000 0000
Q ss_pred cee--eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEE
Q 020461 119 NSA--IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 196 (326)
Q Consensus 119 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~ 196 (326)
... .....+......-...++..++||.+.|..+.|+.+ ++|++++.|.|||||++...++++.+ .|..-|+|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F----~HndfVTc 414 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF----SHNDFVTC 414 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE----ecCCeeEE
Confidence 000 000000000011123567778999999999999984 68999999999999999988888876 48999999
Q ss_pred EEEcC-CCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecc
Q 020461 197 LAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK 275 (326)
Q Consensus 197 v~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (326)
++|+| |.+||++||.|+.||||++-..+.+.-......|.++++.|+|...++|.-.+.+.++.+..........+-..
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 99999 68899999999999999998777665555567899999999999988887666555544332221111111111
Q ss_pred cceeeeccccccCcceeEEEECCCCc-eEEeecCCCcEEEeecCCC
Q 020461 276 ILQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 276 ~~~~~~~~~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~l~~~~~~ 320 (326)
.. ...+ |. .|+.+.|.|... -+...+.|..|||++.+..
T Consensus 495 ~~----Kk~~-~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 495 NK----KKKQ-GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred cC----cccc-Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence 11 1112 33 799999997544 4677788999999988544
No 96
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=191.31 Aligned_cols=222 Identities=22% Similarity=0.338 Sum_probs=161.4
Q ss_pred eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEE-EE---ec--CCCcceeeeec-CCeEEEEEcCcccee
Q 020461 46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF-TF---NF--DSPARSVDFAV-GDKLAVITTDPFMEL 118 (326)
Q Consensus 46 ~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~---~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~ 118 (326)
..+++|+..|.++++.|.|-+|+|||.|.+|++||+....... .| +. ..+++++.+++ ++.++++++..-..+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 3578899999999999999999999999999999997643321 12 11 24677788886 455555555543333
Q ss_pred ceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccc---cccCcceee
Q 020461 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESD---KETGHKKTI 194 (326)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~h~~~v 194 (326)
..+...........++....+...+||...+++.+|+|+.+ .|+|++.||++|+||++..+....+. ...+.+-++
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 33322222333333344444556789999999999999874 88999999999999997655433322 223556778
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeec
Q 020461 195 TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD 274 (326)
Q Consensus 195 ~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (326)
+.++|++||+.+|+|+.||.|++|+.++...-..+
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~--------------------------------------------- 355 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM--------------------------------------------- 355 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccce---------------------------------------------
Confidence 99999999999999999999999997532110000
Q ss_pred ccceeeeccccccCc--ceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 275 KILQEEIGGVKGHFG--PINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 275 ~~~~~~~~~~~~h~~--~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
..-..|.. .|++|+||+||++|++=+.|+++++|++++
T Consensus 356 -------~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 356 -------KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred -------EeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 00123555 799999999999999999999999999986
No 97
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=199.48 Aligned_cols=243 Identities=21% Similarity=0.307 Sum_probs=186.0
Q ss_pred eEEEEcc-CCCEEEeecCCCCeEEEecCC---CCeeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEEccCCcEEE
Q 020461 14 TYLKYNK-DGDLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLF 88 (326)
Q Consensus 14 ~~~~~s~-~~~~l~s~~~d~~v~iw~~~~---~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~ 88 (326)
..+.|+. +.++||+|+.+|.|.+||+.. ...+..|.+|...|.+++|++- ..+|+|||.||+||+||++..+...
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~ 170 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS 170 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence 4556663 478999999999999999987 4566789999999999999874 5689999999999999998654432
Q ss_pred EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC-CcEEEEeeCC
Q 020461 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGED 167 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d 167 (326)
.+ .+....|..+.|+|. +..|+++.+.
T Consensus 171 t~----------------------------------------------------~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 171 TF----------------------------------------------------RSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred cc----------------------------------------------------cccchhhhceeeccCCCceEEEecCC
Confidence 22 122345677788875 4689999999
Q ss_pred CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce--EEEEeeccceEEEEeCCCCC
Q 020461 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTYVTERPVNAVTMSPLLD 245 (326)
Q Consensus 168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~s~~~~ 245 (326)
|.+++||++...... ....+|.++|.++.|+|++.+||||+.|++|+|||+.+.+. ..++....++..+.|-|...
T Consensus 199 G~lqlWDlRqp~r~~--~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCE--KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS 276 (839)
T ss_pred ceEEEeeccCchhHH--HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc
Confidence 999999998654322 23468999999999999999999999999999999986544 34445567899999999876
Q ss_pred e-eEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEEC-CCCceEEeecCCCcEEEeecCCCc
Q 020461 246 H-VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN-PDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 246 ~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
. +++++.-+...+.+||.|- .-.+...+..|..-++.++|. .|...|.+++.||+|....+++.+
T Consensus 277 ~hLAtcsmv~dtsV~VWDvrR-----------PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 277 YHLATCSMVVDTSVHVWDVRR-----------PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred chhhhhhccccceEEEEeecc-----------ccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 4 4444444444444444332 123455677899999999995 467789999999999888777654
No 98
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4e-25 Score=180.30 Aligned_cols=220 Identities=26% Similarity=0.340 Sum_probs=168.4
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 90 (326)
+++.|++-+|+|.+|+.|.-.+.+++|.+++|+++..+.+|-..|+|+.|+.|+.+|+|||.||.|.+|.+.+
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------- 154 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------- 154 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe-------
Confidence 5689999999999999998999999999999999999999999999999999999999999999999998632
Q ss_pred ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcE
Q 020461 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170 (326)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i 170 (326)
++.+..|+.+
T Consensus 155 ----------------------------------------------------------------------lv~a~~~~~~ 164 (476)
T KOG0646|consen 155 ----------------------------------------------------------------------LVSADNDHSV 164 (476)
T ss_pred ----------------------------------------------------------------------ecccccCCCc
Confidence 1122222211
Q ss_pred EEEECCCCccccccccccCcceeeEEEEEcCC--CCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeE
Q 020461 171 RIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVV 248 (326)
Q Consensus 171 ~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 248 (326)
+.++. ..+|.-+|+.+...+. ..+++|+|.|.++++||+..+..+.++..+..+.+++++|....++
T Consensus 165 --------~p~~~---f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 165 --------KPLHI---FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVY 233 (476)
T ss_pred --------cceee---eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEE
Confidence 01111 1245556666655543 4579999999999999999999999999999999999999988888
Q ss_pred EecCCCcceeEeecccCce---eeeEeecccceeeeccccccCc--ceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 249 LGGGQDASAVTTTDHRAGK---FEAKFFDKILQEEIGGVKGHFG--PINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 249 ~~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
+++..+...+..+....+. ...+-+. .....+..+.||.+ +|+|+++|-||..|++|++||.|+||+.-.
T Consensus 234 iGt~~G~I~~~~~~~~~~~~~~v~~k~~~-~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 234 IGTEEGKIFQNLLFKLSGQSAGVNQKGRH-EENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred ecCCcceEEeeehhcCCcccccccccccc-cccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 8776665444332221110 0011111 12334556788988 999999999999999999999999998753
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.5e-25 Score=180.31 Aligned_cols=235 Identities=23% Similarity=0.365 Sum_probs=184.8
Q ss_pred eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 86 (326)
++|-+.+.+++.|+||+|||+|+.|..|.||+..+.+.++.+++|.+.|.+++|-.....|++++.|++|++|+++....
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 48999999999999999999999999999999999999999999999999999988778899999999999999987654
Q ss_pred EEEE-ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461 87 LFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (326)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 165 (326)
+.++ .+...+..++....+..+.++. .+....+|.+.. +...++.++.+.+.+++|-.+ ..|++|+
T Consensus 279 vetlyGHqd~v~~IdaL~reR~vtVGg-----rDrT~rlwKi~e-------esqlifrg~~~sidcv~~In~-~HfvsGS 345 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRERCVTVGG-----RDRTVRLWKIPE-------ESQLIFRGGEGSIDCVAFIND-EHFVSGS 345 (479)
T ss_pred HHHHhCCccceeeechhcccceEEecc-----ccceeEEEeccc-------cceeeeeCCCCCeeeEEEecc-cceeecc
Confidence 4332 3344455555444444443331 123444555522 355677889999999998764 4689999
Q ss_pred CCCcEEEEECCCCcccccccccc---------CcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc----ceEEEEeec
Q 020461 166 EDAIVRIWDTETGKLLKESDKET---------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTYVTE 232 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~---------~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~ 232 (326)
.||.|.+|++-+.+++....... .+..-|++++..|...++++|+.+|.|++|-+..+ +++..+...
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~ 425 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV 425 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc
Confidence 99999999998877765433211 12236899999999999999999999999987765 566666667
Q ss_pred cceEEEEeCCCCCeeEEecCCC
Q 020461 233 RPVNAVTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 233 ~~~~~~~~s~~~~~~~~~~~~~ 254 (326)
.-|+.++|++++..++++.|..
T Consensus 426 GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 426 GFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred cEEEEEEEccCCCEEEEecccc
Confidence 7899999999999888886654
No 100
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=3.7e-26 Score=187.00 Aligned_cols=241 Identities=17% Similarity=0.300 Sum_probs=182.6
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEcc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE 82 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~ 82 (326)
+++.||..+|..++|+++|..++|+|-|+.+++||.++|.++..|.. ...+.|+.|+|++ +.+++|+.|+.|+.||++
T Consensus 252 rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR 330 (503)
T KOG0282|consen 252 RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR 330 (503)
T ss_pred hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEecc
Confidence 67889999999999999999999999999999999999999887754 4467899999998 789999999999999999
Q ss_pred CCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 83 TGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 83 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
+++.+..+.. -..+..+.|.+++...+.+++. ..+.+|....... .-....-+.-...++..+|+++++
T Consensus 331 s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd-----ks~riWe~~~~v~-----ik~i~~~~~hsmP~~~~~P~~~~~ 400 (503)
T KOG0282|consen 331 SGKVVQEYDRHLGAILDITFVDEGRRFISSSDD-----KSVRIWENRIPVP-----IKNIADPEMHTMPCLTLHPNGKWF 400 (503)
T ss_pred chHHHHHHHhhhhheeeeEEccCCceEeeeccC-----ccEEEEEcCCCcc-----chhhcchhhccCcceecCCCCCee
Confidence 9987655533 3566777888776655555432 1233333221100 000111122235678889999999
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcc--eeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-ccceEEE
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAV 238 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~ 238 (326)
+.=+.|+.|.++.+...-.........||. +.-+.+.|||||.+|++|+.||.+.+||.++-+++..+.. ..++..+
T Consensus 401 ~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v 480 (503)
T KOG0282|consen 401 AAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGV 480 (503)
T ss_pred hhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEE
Confidence 999999999999865332222222234664 3457789999999999999999999999999999888864 4788999
Q ss_pred EeCCCCCeeEEecCCCc
Q 020461 239 TMSPLLDHVVLGGGQDA 255 (326)
Q Consensus 239 ~~s~~~~~~~~~~~~~~ 255 (326)
.|+|.....+++++.++
T Consensus 481 ~wHP~e~Skvat~~w~G 497 (503)
T KOG0282|consen 481 DWHPVEPSKVATCGWDG 497 (503)
T ss_pred EecCCCcceeEecccCc
Confidence 99999888877777665
No 101
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=177.09 Aligned_cols=286 Identities=15% Similarity=0.225 Sum_probs=196.0
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecC--CCCeeeeccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQ 86 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~--~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~ 86 (326)
..+|+++.|+|..++|++|+.|++++||.+. ....+..+.--.-+|.+..|+|+|+ .+++++....+..||+.+++.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3679999999999999999999999999764 3344555544566899999999998 899999999999999988875
Q ss_pred EEEEec----CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 87 LFTFNF----DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 87 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
...-.. ......+.+++.+.+++..+.. +.+++... .+++.+..++ -.+.|..+.|+.+++.|+
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I~lLha------kT~eli~s~K-ieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHIHLLHA------KTKELITSFK-IEGVVSDFTFSSDSKELL 360 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccC-----ceEEeehh------hhhhhhheee-eccEEeeEEEecCCcEEE
Confidence 432221 1122334556665555543321 11222111 1222333222 246788999999999999
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC------cceEEEEee-ccce
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART------LELIKTYVT-ERPV 235 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~-~~~~ 235 (326)
.++.+|.|.+||+++..+++.+.... .-.-++++.++++.+||+||..|.|-|||.++ .+++..+.. ...|
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G--~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDG--SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecC--ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheee
Confidence 99999999999999887766543221 12347889999999999999999999999764 344444332 3468
Q ss_pred EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461 236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH 315 (326)
Q Consensus 236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~ 315 (326)
+.+.|+++...++++...-...+...-... ... -.++......-+.|+||+|||.|.+||.|.++|.+.||
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS----~TV-----FsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPS----CTV-----FSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccc----eee-----eccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence 999999999888877543322222110000 000 11111112233569999999999999999999999999
Q ss_pred ecC
Q 020461 316 HFD 318 (326)
Q Consensus 316 ~~~ 318 (326)
.+.
T Consensus 510 kL~ 512 (514)
T KOG2055|consen 510 KLH 512 (514)
T ss_pred eec
Confidence 863
No 102
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-23 Score=164.12 Aligned_cols=245 Identities=17% Similarity=0.226 Sum_probs=191.6
Q ss_pred ecCCceeEEEEccCCCEEEeecC--CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAK--DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~--d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
.++-.+..++|-...+.+..++. |.+||.-++.+.+.++.|.||...|.+|+.+|-++.++|++.|++|++||++..+
T Consensus 54 skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~ 133 (311)
T KOG1446|consen 54 SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK 133 (311)
T ss_pred cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC
Confidence 34446778889888777776666 8999999999999999999999999999999999999999999999999998665
Q ss_pred EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 165 (326)
+...+.. ..-..++|+|.|-++|.+.
T Consensus 134 cqg~l~~------------------------------------------------------~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 134 CQGLLNL------------------------------------------------------SGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred CceEEec------------------------------------------------------CCCcceeECCCCcEEEEec
Confidence 4322111 0112357899999999998
Q ss_pred CCCcEEEEECCCC--ccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccc----eEEEE
Q 020461 166 EDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP----VNAVT 239 (326)
Q Consensus 166 ~d~~i~~wd~~~~--~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~ 239 (326)
..+.|+++|++.- .+...+....+...+.+.+.||+||++++.++..+.+++.|.-+|....++..... .-..+
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 8889999999853 33344433335567899999999999999999999999999999998888764332 24778
Q ss_pred eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccc-cCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
|+|+++.++.+.+++ .+..|+...+.++..+.+ +.+++.++.|+|.-.++||+ +..+.+|--+
T Consensus 240 ftPds~Fvl~gs~dg--------------~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDG--------------TIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred ECCCCcEEEEecCCC--------------cEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 999998877665433 245666677777787777 78899999999988888755 5678888766
Q ss_pred CCce
Q 020461 319 PDYF 322 (326)
Q Consensus 319 ~~~~ 322 (326)
.+.+
T Consensus 304 ~~~~ 307 (311)
T KOG1446|consen 304 EDAL 307 (311)
T ss_pred cccc
Confidence 5443
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.2e-25 Score=188.63 Aligned_cols=241 Identities=22% Similarity=0.324 Sum_probs=196.7
Q ss_pred EEEEc-cCCCEEEeecCCCCeEEEecCCCC------eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 15 YLKYN-KDGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 15 ~~~~s-~~~~~l~s~~~d~~v~iw~~~~~~------~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
.+..+ |.+++|++||.||.|++|+..... .+..++.|...|+.+....+++.|+|+|.|-+|++|+...+..
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~- 107 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT- 107 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-
Confidence 45555 567789999999999999764321 3677889999999999999999999999999999999864321
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE-ecCCcEEEEeeC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW-GPLNRTIISAGE 166 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~~~ 166 (326)
-++.+++.|...|.++++ -++...+++||-
T Consensus 108 -------------------------------------------------~c~stir~H~DYVkcla~~ak~~~lvaSgGL 138 (735)
T KOG0308|consen 108 -------------------------------------------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGL 138 (735)
T ss_pred -------------------------------------------------hhHhhhhcccchheeeeecccCceeEEecCC
Confidence 122334567778888888 566778999999
Q ss_pred CCcEEEEECCCCcc--cccc-----ccc-cCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEE
Q 020461 167 DAIVRIWDTETGKL--LKES-----DKE-TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA 237 (326)
Q Consensus 167 d~~i~~wd~~~~~~--~~~~-----~~~-~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~ 237 (326)
|+.|.+||++++.. +... ... .|+...|.+++..++|..+++|+..+-|++||.++.+.+..+. +...+..
T Consensus 139 D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ 218 (735)
T KOG0308|consen 139 DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRV 218 (735)
T ss_pred CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEE
Confidence 99999999998733 2211 112 3788999999999999999999999999999999998888876 4568999
Q ss_pred EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
+..+++|..++.+++++ .+++|+...+..+..+..|...|+++.-+|+=.++.+|+.||.|..=++
T Consensus 219 ll~~dDGt~~ls~sSDg--------------tIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 219 LLVNDDGTRLLSASSDG--------------TIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred EEEcCCCCeEeecCCCc--------------eEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence 99999999888765543 3678888888888889999999999999999999999999999987665
Q ss_pred CC
Q 020461 318 DP 319 (326)
Q Consensus 318 ~~ 319 (326)
.+
T Consensus 285 ~n 286 (735)
T KOG0308|consen 285 RN 286 (735)
T ss_pred CC
Confidence 54
No 104
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.3e-24 Score=187.34 Aligned_cols=243 Identities=19% Similarity=0.265 Sum_probs=186.1
Q ss_pred eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC-CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
-.|....+.++|.|+|+.|.+|+.||.|++|+.... +...++.-+...|.+++- ++.+|++|+.+++|.+|.+..++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 478999999999999999999999999999987665 444445447888888875 45589999999999999887654
Q ss_pred EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 165 (326)
.-..+ .--.-++++++++.+|.+++.||
T Consensus 88 ~~~iL----------------------------------------------------~Rftlp~r~~~v~g~g~~iaags 115 (933)
T KOG1274|consen 88 EDTIL----------------------------------------------------ARFTLPIRDLAVSGSGKMIAAGS 115 (933)
T ss_pred cccee----------------------------------------------------eeeeccceEEEEecCCcEEEeec
Confidence 31100 00013467788899999999999
Q ss_pred CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee---------ccceE
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---------ERPVN 236 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~~~~ 236 (326)
+|-.|++-+..+......+ .+|.++|.++.++|++.+||+.+.||.|++||++++.+..++.. ...+.
T Consensus 116 dD~~vK~~~~~D~s~~~~l---rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~ 192 (933)
T KOG1274|consen 116 DDTAVKLLNLDDSSQEKVL---RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICT 192 (933)
T ss_pred CceeEEEEeccccchheee---cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceee
Confidence 9999999999877655544 58999999999999999999999999999999999887777642 23466
Q ss_pred EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 237 ~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
-++|+|.+..+++.+.++...+.. ..-|...-. + ....|...+.+++|||.|+|||+++.||.|-||+
T Consensus 193 ~~aW~Pk~g~la~~~~d~~Vkvy~---------r~~we~~f~--L-r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 193 RLAWHPKGGTLAVPPVDNTVKVYS---------RKGWELQFK--L-RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred eeeecCCCCeEEeeccCCeEEEEc---------cCCceehee--e-cccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 788999988877765544332221 112221110 1 1123445599999999999999999999999999
Q ss_pred cC
Q 020461 317 FD 318 (326)
Q Consensus 317 ~~ 318 (326)
++
T Consensus 261 v~ 262 (933)
T KOG1274|consen 261 VD 262 (933)
T ss_pred cc
Confidence 98
No 105
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=7.9e-25 Score=187.29 Aligned_cols=245 Identities=19% Similarity=0.260 Sum_probs=192.9
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC---CCeEEEEeCCCcEEEEEccCCcE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVETGAQ 86 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~d~~i~~wd~~~~~~ 86 (326)
.-.+.+++.||+|++||+|..-|.++||++.+-+....+.+|...|.|+.|+-. .++|++++.|+.|.+||....-.
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~ 538 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD 538 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence 456899999999999999999999999999988888888999999999999853 46899999999999999976432
Q ss_pred -EEEE-ecCCCcceeeeecCC---eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC----ccceeEEEEecC
Q 020461 87 -LFTF-NFDSPARSVDFAVGD---KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP----QGRINRAVWGPL 157 (326)
Q Consensus 87 -~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~ 157 (326)
+..+ .+...+.+++|...+ +++.++.++.+ .+. ..+. .+.-....++| ...++.++..|.
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscGADksi------mFr-~~qk----~~~g~~f~r~t~t~~ktTlYDm~Vdp~ 607 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI------MFR-VNQK----ASSGRLFPRHTQTLSKTTLYDMAVDPT 607 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEeccCchhh------hee-hhcc----ccCceeccccccccccceEEEeeeCCC
Confidence 2222 234566777776433 33333333221 111 1110 00011111222 245788999999
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEE
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 237 (326)
.+++++++.|..|+|||+.+++..+.+....+|.+....+..+|.|.|+++.+.|.++.++|.-+++|+.+
T Consensus 608 ~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~--------- 678 (1080)
T KOG1408|consen 608 SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ--------- 678 (1080)
T ss_pred cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh---------
Confidence 99999999999999999999999999888889999999999999999999999999999999988877522
Q ss_pred EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
+.||.+.|+.+.|.+|.+.|++.+.||.|-+|++
T Consensus 679 ----------------------------------------------m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 679 ----------------------------------------------MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred ----------------------------------------------hcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 4578899999999999999999999999999998
Q ss_pred CCC
Q 020461 318 DPD 320 (326)
Q Consensus 318 ~~~ 320 (326)
+-+
T Consensus 713 p~~ 715 (1080)
T KOG1408|consen 713 PLT 715 (1080)
T ss_pred chh
Confidence 753
No 106
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=7e-26 Score=193.70 Aligned_cols=237 Identities=24% Similarity=0.395 Sum_probs=196.7
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
+..|...+.|+..-..++.+++|+.|..+.+|.......+..+.+|..+|.++.|+++..+|++|+.+|+||+||+++++
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 34577888888887778899999999999999988888888899999999999999999999999999999999998654
Q ss_pred EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 165 (326)
.+ ..+.||...+.++.|+|.+.++++|+
T Consensus 104 ~v----------------------------------------------------rtLtgh~~~~~sv~f~P~~~~~a~gS 131 (825)
T KOG0267|consen 104 IV----------------------------------------------------RTLTGHLLNITSVDFHPYGEFFASGS 131 (825)
T ss_pred hh----------------------------------------------------hhhhccccCcceeeeccceEEecccc
Confidence 32 23457777888899999999999999
Q ss_pred CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCC
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL 244 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~ 244 (326)
.|+.+++||++...+...+. +|...+..+.++|+|.++++|+.|.+++|||...++...+|. ++..+.++.++|..
T Consensus 132 tdtd~~iwD~Rk~Gc~~~~~---s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e 208 (825)
T KOG0267|consen 132 TDTDLKIWDIRKKGCSHTYK---SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE 208 (825)
T ss_pred ccccceehhhhccCceeeec---CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchh
Confidence 99999999998766766553 588999999999999999999999999999999999999987 67889999999864
Q ss_pred CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCc
Q 020461 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY 311 (326)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~ 311 (326)
.+...|+.|. .++||+..+.+-+.........|.+.+|+|+++.+++|..+..
T Consensus 209 -~Lla~Gs~d~-------------tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 209 -VLLAPGSSDR-------------TVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred -hhhccCCCCc-------------eeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 3444444443 2456666554545545555678999999999999998876543
No 107
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.2e-23 Score=175.07 Aligned_cols=293 Identities=20% Similarity=0.293 Sum_probs=192.3
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCe-EEEEeCCCcEEEEEcc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT-LITGSADQTAKLWNVE 82 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~~~d~~i~~wd~~ 82 (326)
.+++||++.|.+++.+|.|.+|++|+.||+||||.+.+|.|+.++.- .+.|.|++|+|.+.. +++++....+.+-+..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 78999999999999999999999999999999999999999988753 568999999997652 3334444445555543
Q ss_pred CCcEEE--------------------------------------EEecCCCcceeeeec-CCeEEEEEcCccceeceeee
Q 020461 83 TGAQLF--------------------------------------TFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIH 123 (326)
Q Consensus 83 ~~~~~~--------------------------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 123 (326)
-|..+. .+.+..++..+.|+- ++.++.+..+.. +..+.
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~---~~~Vl 549 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG---NKSVL 549 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC---cceEE
Confidence 331111 111122223333332 222222221100 00000
Q ss_pred eeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC
Q 020461 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG 203 (326)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~ 203 (326)
+..+.. .....-++-..+.|.++.|+|...+|+.+... .|++||+-.+..++.+.. -...|..++++|.|
T Consensus 550 iHQLSK------~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~t---g~kwiS~msihp~G 619 (733)
T KOG0650|consen 550 IHQLSK------RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLT---GSKWISSMSIHPNG 619 (733)
T ss_pred EEeccc------ccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhc---CCeeeeeeeecCCC
Confidence 111100 00111122234568899999999988888765 499999988777665432 34568899999999
Q ss_pred CeEEEEeCCCeEEEeecCCc-ceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeee
Q 020461 204 SHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEI 281 (326)
Q Consensus 204 ~~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (326)
..|+.|+.|+.+..+|+.-. ++.+++. +...+..+++++....++++ .+|+.++... .++ ...+.......++
T Consensus 620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~-sdDgtv~Vfh-g~V---Y~Dl~qnpliVPl 694 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASG-SDDGTVIVFH-GMV---YNDLLQNPLIVPL 694 (733)
T ss_pred CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeee-cCCCcEEEEe-eee---ehhhhcCCceEee
Confidence 99999999999999998754 3444443 45678999999877665554 4444433221 110 0111112233456
Q ss_pred ccccccCcc----eeEEEECCCCceEEeecCCCcEEEe
Q 020461 282 GGVKGHFGP----INALAFNPDGKSFSSGGEDGYVRLH 315 (326)
Q Consensus 282 ~~~~~h~~~----v~~v~~s~d~~~lat~s~Dg~i~l~ 315 (326)
..+.+|... |..+.|+|...+|.|+++||+||||
T Consensus 695 K~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 695 KRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 678899877 9999999999999999999999998
No 108
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=3.9e-22 Score=167.14 Aligned_cols=269 Identities=16% Similarity=0.142 Sum_probs=181.5
Q ss_pred CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEEEccCCcEEEEEecCCCcceeee
Q 020461 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF 101 (326)
Q Consensus 23 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 101 (326)
+.+++++.|+.+++||..+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..+++....+........+.+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 5788999999999999999998888876654 6779999999876 5677889999999998887665544333455667
Q ss_pred ecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC-cEEEEECCCCcc
Q 020461 102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA-IVRIWDTETGKL 180 (326)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~ 180 (326)
++++..+++.... ...+.++++.. ...+..+.. ...+..+.|+|++..+++++.++ .+..||.++++.
T Consensus 81 ~~~g~~l~~~~~~----~~~l~~~d~~~------~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 81 HPNGKILYIANED----DNLVTVIDIET------RKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred CCCCCEEEEEcCC----CCeEEEEECCC------CeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence 7666544433211 12233333321 123333332 23457799999999999888765 567789887765
Q ss_pred ccccccccCcceeeEEEEEcCCCCeEEEE-eCCCeEEEeecCCcceEEEEeec--------cceEEEEeCCCCCeeEEec
Q 020461 181 LKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTE--------RPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 181 ~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~s~~~~~~~~~~ 251 (326)
..... .......+++++++.+|+.+ ..++.|++||+++++.+..+... .....++++|+++.++++.
T Consensus 150 ~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~ 225 (300)
T TIGR03866 150 VDNVL----VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL 225 (300)
T ss_pred EEEEE----cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence 44321 12345678999999988554 56999999999999887765421 1234678899998866654
Q ss_pred CCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee-cCCCcEEEeecCCCc
Q 020461 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG-GEDGYVRLHHFDPDY 321 (326)
Q Consensus 252 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~-s~Dg~i~l~~~~~~~ 321 (326)
+.+.. +..+|.+. .+....+ .+...+.+++|+|+|++|+++ +.+|+|++|+.+...
T Consensus 226 ~~~~~-i~v~d~~~------------~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 226 GPANR-VAVVDAKT------------YEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCCe-EEEEECCC------------CcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 33321 33333322 2211111 123468899999999999876 569999999988754
No 109
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.1e-25 Score=192.62 Aligned_cols=190 Identities=26% Similarity=0.401 Sum_probs=169.6
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 84 (326)
-|.+|+.+|.++.|+++-.+|++|+.+|+|++||++.+..++++.+|...+.+++|+|-+.++++++.|.-+++||++..
T Consensus 65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (326)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 164 (326)
.+. ...++|...+..+.|+|+|+++++|
T Consensus 145 Gc~----------------------------------------------------~~~~s~~~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 145 GCS----------------------------------------------------HTYKSHTRVVDVLRLSPDGRWVASG 172 (825)
T ss_pred Cce----------------------------------------------------eeecCCcceeEEEeecCCCceeecc
Confidence 332 2234577778899999999999999
Q ss_pred eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEEeCCC
Q 020461 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPL 243 (326)
Q Consensus 165 ~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~ 243 (326)
++|.++++||...|+...++. +|...+.++.++|..-.+++|+.|+++++||+++.+.+.....+ ..+.+..|+|+
T Consensus 173 ~ed~tvki~d~~agk~~~ef~---~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLSKEFK---SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPD 249 (825)
T ss_pred CCcceeeeecccccccccccc---cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCC
Confidence 999999999999998887764 68899999999999999999999999999999999988876543 57899999999
Q ss_pred CCeeEE
Q 020461 244 LDHVVL 249 (326)
Q Consensus 244 ~~~~~~ 249 (326)
+..+..
T Consensus 250 ~~~~~~ 255 (825)
T KOG0267|consen 250 GKIVLS 255 (825)
T ss_pred ceeeec
Confidence 876654
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=2.5e-23 Score=168.45 Aligned_cols=237 Identities=22% Similarity=0.297 Sum_probs=191.1
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 90 (326)
..+.++...|..+.+++|+.|..+.++|...+..+.+++||+..|..+.|+++...+++++.|..|++|.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---- 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---- 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC----
Confidence 4577888888778899999999999999999999999999999999999999999999999999999998643211
Q ss_pred ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcE
Q 020461 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170 (326)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i 170 (326)
......|+++|+.+..+|.|.||+++++|++.
T Consensus 296 ------------------------------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w 327 (506)
T KOG0289|consen 296 ------------------------------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTW 327 (506)
T ss_pred ------------------------------------------------ccccccccccceeeeeccCCcEEEEecCCceE
Confidence 11234578889999999999999999999999
Q ss_pred EEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEE
Q 020461 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVL 249 (326)
Q Consensus 171 ~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~ 249 (326)
..-|++++..+...... .-.-.+++.+|+|||..|.+|+.|+.++|||++++..+..|. +..++..++|+.+|-.+++
T Consensus 328 ~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat 406 (506)
T KOG0289|consen 328 AFSDISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLAT 406 (506)
T ss_pred EEEEccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEE
Confidence 99999999877654321 223458999999999999999999999999999999888886 4578999999999988877
Q ss_pred ecCCCcceeEeecccCceeeeEeecccceeeeccccc-cCcceeEEEECCCCceEEeecCCCcEEE
Q 020461 250 GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRL 314 (326)
Q Consensus 250 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l 314 (326)
+..++. +..||.|..+ .+ ..+.- ....|.++.|.+.|.+|+.++.|=+|.+
T Consensus 407 ~add~~--V~lwDLRKl~----n~--------kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~ 458 (506)
T KOG0289|consen 407 AADDGS--VKLWDLRKLK----NF--------KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYI 458 (506)
T ss_pred EecCCe--EEEEEehhhc----cc--------ceeeccccccceeEEEcCCCCeEEeecceeEEEE
Confidence 654443 5566665432 11 11111 1126899999999999999977766655
No 111
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=2.3e-24 Score=168.74 Aligned_cols=247 Identities=25% Similarity=0.390 Sum_probs=184.1
Q ss_pred CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe---------cCCCcceeeeecCCeEEEEEcCccceece
Q 020461 50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN---------FDSPARSVDFAVGDKLAVITTDPFMELNS 120 (326)
Q Consensus 50 ~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
+....+.|..|+||+++|++|+.||.|.+||..+|+....++ .+.++.++.|+.+..+++.+ ..+.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG-----sqDG 285 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG-----SQDG 285 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc-----CcCC
Confidence 345567889999999999999999999999999988655433 34567778887766665543 2345
Q ss_pred eeeeeeeccCCCCCCCceEEEe-ccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE
Q 020461 121 AIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199 (326)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~ 199 (326)
.+++|++. +|.+++.+ +.|...|+++.|+.++..+++++.|.++++-.+++|++++++. ||+.-|+...|
T Consensus 286 kIKvWri~------tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr---GHsSyvn~a~f 356 (508)
T KOG0275|consen 286 KIKVWRIE------TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR---GHSSYVNEATF 356 (508)
T ss_pred cEEEEEEe------cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc---CccccccceEE
Confidence 67777764 34444444 4899999999999999999999999999999999999988774 89999999999
Q ss_pred cCCCCeEEEEeCCCeEEEeecCCcceEEEEeec---cceEEEEeCCC-CCeeEEecCCCcceeEeecccCceeeeEeecc
Q 020461 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPVNAVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK 275 (326)
Q Consensus 200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (326)
.+||..+++++.||+|++|+.++.+|+.++.+. .+++.+-.-|- ..+++++.......+-.. .+.. ++-+..
T Consensus 357 t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~---qGQv-VrsfsS 432 (508)
T KOG0275|consen 357 TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM---QGQV-VRSFSS 432 (508)
T ss_pred cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec---cceE-Eeeecc
Confidence 999999999999999999999999999998643 46777665554 345666544333222111 1111 111110
Q ss_pred cceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCce
Q 020461 276 ILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF 322 (326)
Q Consensus 276 ~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~ 322 (326)
+ +-..+..-+.+.||.|.++...++|+.+..|++....+
T Consensus 433 --G------kREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 433 --G------KREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred --C------CccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence 0 11224556778899999999999999999998766543
No 112
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=2.6e-23 Score=169.38 Aligned_cols=290 Identities=17% Similarity=0.221 Sum_probs=193.1
Q ss_pred eeeeecCCceeEEEEccCC--CEEEeecCCCCeEEEecC----CCCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcE
Q 020461 4 ILMKGHERPLTYLKYNKDG--DLLFSCAKDHTPTVWFAD----NGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTA 76 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~--~~l~s~~~d~~v~iw~~~----~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i 76 (326)
.+.+-|...|++++|+|.- +++++|..-|.|-+||+. +...+..+..|.++|.++.|+|.+ ..+++.|.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 4567788999999999964 588899999999999994 334577788999999999999954 579999999999
Q ss_pred EEEEccCCcEEEEEecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461 77 KLWNVETGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (326)
++=|++++..-..+..+ .....+++...+..++...+ + +...+++.. ..+..+..++-|...|+.++
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~-~----G~f~~iD~R-----~~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN-V----GNFNVIDLR-----TDGSEYENLRLHKKKITSVA 329 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec-c----cceEEEEee-----cCCccchhhhhhhcccceee
Confidence 99999875432222221 11122334433333332221 1 111222221 12234455667778999999
Q ss_pred EecCCc-EEEEeeCCCcEEEEECCCCccccc-cccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec----CCcceEE
Q 020461 154 WGPLNR-TIISAGEDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA----RTLELIK 227 (326)
Q Consensus 154 ~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~----~~~~~~~ 227 (326)
++|... +|+|+|.|++.+|||++.-..... +.....|...|.+..|||.+..|+|.+.|.+|++||. ...++..
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc
Confidence 999765 788999999999999975332222 3345679999999999999889999999999999998 4455555
Q ss_pred EEeeccc------eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccccc-CcceeE-EEECCC
Q 020461 228 TYVTERP------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINA-LAFNPD 299 (326)
Q Consensus 228 ~~~~~~~------~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~-v~~s~d 299 (326)
++.+... .--..|.|+.+.++++.-.+ .+.+++...++-+..+.+- ...|.+ ..|+|-
T Consensus 410 ~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r--------------~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~ 475 (498)
T KOG4328|consen 410 TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPR--------------PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPM 475 (498)
T ss_pred eeeccCcccccccchhheeCCCccEEEEeccCc--------------ceeEEcCCCCEEeeeccCccccccccceeeccc
Confidence 5554321 23456888766666543322 2444554444433322211 123433 689998
Q ss_pred CceEEe-ecCCCcEEEeec
Q 020461 300 GKSFSS-GGEDGYVRLHHF 317 (326)
Q Consensus 300 ~~~lat-~s~Dg~i~l~~~ 317 (326)
+..+|+ ++.-|.|.||.-
T Consensus 476 ~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 476 RDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ccceeccCCccceEEEEec
Confidence 885544 455788888754
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=4.1e-23 Score=160.00 Aligned_cols=233 Identities=21% Similarity=0.334 Sum_probs=175.6
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCC--eEEEEeCCCcEEEEE
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLWN 80 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~~~d~~i~~wd 80 (326)
|..+..|.++|.+++|+.||..+++|+.|+.+++||+.++. +..+-.|.++|.++.|-+... .|+|||+|++||.||
T Consensus 65 ~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 65 PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 45677899999999999999999999999999999999995 456778999999999977654 899999999999999
Q ss_pred ccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (326)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (326)
.+...++..++.+..+-+.+ -...+
T Consensus 144 ~R~~~pv~t~~LPeRvYa~D-------------------------------------------------------v~~pm 168 (347)
T KOG0647|consen 144 TRSSNPVATLQLPERVYAAD-------------------------------------------------------VLYPM 168 (347)
T ss_pred cCCCCeeeeeeccceeeehh-------------------------------------------------------ccCce
Confidence 99877776655432211110 01235
Q ss_pred EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE-----ee----
Q 020461 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-----VT---- 231 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~---- 231 (326)
++.+..++.|.++.++.+....... ...-...++|++..+|....+-|+-+|.+-+..+..+.....+ ..
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~~-~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~ 247 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKRI-ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV 247 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhhh-cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence 6778888999999997654432211 1223456889999999888899999999999887764222221 11
Q ss_pred ---ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee
Q 020461 232 ---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 306 (326)
Q Consensus 232 ---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~ 306 (326)
-..|+.++|+|....++++|+++. ..+||.....++.....|..+|.+.+|+.+|.++|-+
T Consensus 248 ~~~VYaVNsi~FhP~hgtlvTaGsDGt--------------f~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 248 NDDVYAVNSIAFHPVHGTLVTAGSDGT--------------FSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCceEEecceEeecccceEEEecCCce--------------EEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 135889999998888887776542 2466666666666677799999999999999998755
No 114
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2e-23 Score=177.98 Aligned_cols=237 Identities=28% Similarity=0.408 Sum_probs=181.9
Q ss_pred eeeeecCCceeE-EEEcc-CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 4 ILMKGHERPLTY-LKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 4 ~~~~~h~~~i~~-~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
..+.+|.+.|.+ ++|-+ ++-+|++|+.|+.+.+|.....+..+++++|+..|.+++...++. ++|||+|.++++|-.
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence 456678888877 88886 444699999999999999999999999999999999998776666 899999999999976
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
.. ....+.+|+..|..+..-|.+ .+
T Consensus 130 ~~------------------------------------------------------l~~~l~gH~asVWAv~~l~e~-~~ 154 (745)
T KOG0301|consen 130 GE------------------------------------------------------LVYSLQGHTASVWAVASLPEN-TY 154 (745)
T ss_pred hh------------------------------------------------------hhcccCCcchheeeeeecCCC-cE
Confidence 32 122256888999988888876 89
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEe
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM 240 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~ 240 (326)
+||+.|.+|++|.- +++++++ .+|...|+.+++-+++ .|+++++||.|++|++ +++++..+. +..-+.++++
T Consensus 155 vTgsaDKtIklWk~--~~~l~tf---~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~ 227 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG--GTLLKTF---SGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM 227 (745)
T ss_pred EeccCcceeeeccC--Cchhhhh---ccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEe
Confidence 99999999999975 5556555 4899999999998875 5899999999999999 677777665 4556788886
Q ss_pred CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
...+..++++ |+|.. +++|+.. +..+.+.--.--|+++.+-++|. +++|+.||.||||..+.+
T Consensus 228 ~~~~~~Ivs~-gEDrt-------------lriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 228 ALSDGLIVST-GEDRT-------------LRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred cCCCCeEEEe-cCCce-------------EEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 6665555554 44432 3445433 22222221222588888877666 566888999999998854
No 115
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3e-22 Score=170.47 Aligned_cols=286 Identities=16% Similarity=0.222 Sum_probs=206.7
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCC-eeeeccCcc-cceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-~~~~~~~h~-~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
..+|.+++|+.+++.||.+=.||.|.||++..+= +...+.++. +.|.+++|++ +..|+|.+.+|+|--||+.+.++.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCcee
Confidence 3679999999999999999999999999998763 344556654 4699999994 567899999999999999999988
Q ss_pred EEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461 88 FTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (326)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 166 (326)
..++. .+++.+++..+.+....++.+......-.+....+ .....+.-..++|.++.|+|++..+++|+.
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I---------~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI---------TYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE---------EEEeecccccceEEEEEecCCccEEEeccc
Confidence 87764 35566677777665555543321111111111111 111222233588999999999999999999
Q ss_pred CCcEEEEECCCCccccc----ccc-ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEe
Q 020461 167 DAIVRIWDTETGKLLKE----SDK-ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM 240 (326)
Q Consensus 167 d~~i~~wd~~~~~~~~~----~~~-~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~ 240 (326)
||.|++||..++..+.. +.. ..+....|.+|.+-.++ .+++|..-|+|++||...+.+++.+. +...+.+++.
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav 253 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAV 253 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEE
Confidence 99999999998876651 111 12234568888888775 69999999999999999999888875 5678999999
Q ss_pred CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
+++.+.++++|.+...+.......... |-. ......|...|.+++..++ .+.+|+.|.++.+-..+
T Consensus 254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~-----wv~-----~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKIIQYSLTTNKSE-----WVI-----NSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR 319 (691)
T ss_pred cCCCCeEEEccCCCceEEEEecCCccc-----eee-----eccccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence 999999999887766543322211111 211 1223467788999999866 99999999999884443
No 116
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=3.4e-23 Score=175.12 Aligned_cols=276 Identities=18% Similarity=0.250 Sum_probs=180.9
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeee--ccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEcc
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE 82 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~ 82 (326)
...|...|..+.|-|-...|++++.|.+++.||+++.+++.. +.||.+.|.+++|++.. ..|++|+.||.|.|||+.
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 456999999999999556899999999999999999998877 89999999999999965 579999999999999986
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE---EEEecCCc
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR---AVWGPLNR 159 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~ 159 (326)
....-....+. +.+. . ..... ..+.......+...+.+.+.|.+ +.+..|..
T Consensus 176 ~n~~d~~e~~~---~~~~----------~-----~~n~~-------ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~ 230 (720)
T KOG0321|consen 176 CNGVDALEEFD---NRIY----------G-----RHNTA-------PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES 230 (720)
T ss_pred ccchhhHHHHh---hhhh----------c-----cccCC-------CCCCchhhccccccccccCceeeeeEEEEEeccc
Confidence 54310000000 0000 0 00000 00000001112223344444544 55667788
Q ss_pred EEEEeeC-CCcEEEEECCCCcccccccc-----ccCc---ceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce--EEE
Q 020461 160 TIISAGE-DAIVRIWDTETGKLLKESDK-----ETGH---KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKT 228 (326)
Q Consensus 160 ~l~s~~~-d~~i~~wd~~~~~~~~~~~~-----~~~h---~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~ 228 (326)
.|+++|. |+.|++||+++......... ..-| ...++++..+..|.+|.+.+.|+.|++||+.+... +..
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~ 310 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE 310 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhh
Confidence 8998888 99999999987554432221 1122 34578888899999999999999999999986432 222
Q ss_pred Eeec---cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc-eeeeccccccCcceeEEEECCCC-ceE
Q 020461 229 YVTE---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEIGGVKGHFGPINALAFNPDG-KSF 303 (326)
Q Consensus 229 ~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~v~~s~d~-~~l 303 (326)
+... ..-..-..+|++..++.+...... ++|.... ......+.||.-.|++++|.|.- .-+
T Consensus 311 ~sg~~~~sf~vks~lSpd~~~l~SgSsd~~a--------------yiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v 376 (720)
T KOG0321|consen 311 FSGKLNSSFYVKSELSPDDCSLLSGSSDEQA--------------YIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPV 376 (720)
T ss_pred ccCcccceeeeeeecCCCCceEeccCCCcce--------------eeeeecCccCChhhhhCcceEEEEEeeccccCCCc
Confidence 2111 112233457777666655433322 2232221 23345678999999999998743 347
Q ss_pred EeecCCCcEEEeecCCC
Q 020461 304 SSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 304 at~s~Dg~i~l~~~~~~ 320 (326)
|||++|-++++|++-++
T Consensus 377 ~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 377 ATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeccCcceEEEeccCc
Confidence 78899999999999543
No 117
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=9.4e-24 Score=174.02 Aligned_cols=242 Identities=18% Similarity=0.296 Sum_probs=188.5
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC---CeeeeccC--cccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRG--HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~---~~~~~~~~--h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
.|..-|.++..|...+++++|+. |-|+|||+... ..+..+.. ....|.++.+.|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 46677888899988889998876 78999998643 23444433 34568889999999999999999999999997
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
........+... ..-..+.++.+||.+..+
T Consensus 496 apTprikaelts--------------------------------------------------sapaCyALa~spDakvcF 525 (705)
T KOG0639|consen 496 APTPRIKAELTS--------------------------------------------------SAPACYALAISPDAKVCF 525 (705)
T ss_pred CCCcchhhhcCC--------------------------------------------------cchhhhhhhcCCccceee
Confidence 654322211110 011234567889999999
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~ 242 (326)
++..||.|.|||++....++.+ .||...+.|+.+++||..|-||+.|.+||.||++++..+.++.....|.++...|
T Consensus 526 sccsdGnI~vwDLhnq~~Vrqf---qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP 602 (705)
T KOG0639|consen 526 SCCSDGNIAVWDLHNQTLVRQF---QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP 602 (705)
T ss_pred eeccCCcEEEEEcccceeeecc---cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCC
Confidence 9999999999999988877766 4899999999999999999999999999999999999888887778899999999
Q ss_pred CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
.+++++++-.+... ++.... +.....+.-|.+-|.++.|.+-|+++++.+.|..+..|+.+
T Consensus 603 ~~dWlavGMens~v--------------evlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 603 TGDWLAVGMENSNV--------------EVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred CccceeeecccCcE--------------EEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCc
Confidence 99999886332221 111111 11122345688899999999999999999999999999865
No 118
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.7e-23 Score=159.41 Aligned_cols=201 Identities=20% Similarity=0.314 Sum_probs=152.5
Q ss_pred eeeecCCceeEEEEccCCC--EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 5 LMKGHERPLTYLKYNKDGD--LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~--~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
.+..|.+.|+++.|.+... .|++|+.||.|.+|+...=+++.++++|.++|+.++.+|.+++-++.+.|+++++||+-
T Consensus 78 ~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 78 ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence 4567899999999998765 89999999999999998889999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
+|+.-+..........+.|.+. +.+++...+.. .++.+.. ......+ ..+.++.++.|- ++..+
T Consensus 158 ~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i-------~i~q~d~------A~v~~~i-~~~~r~l~~~~l-~~~~L 222 (362)
T KOG0294|consen 158 RGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKI-------DIYQLDN------ASVFREI-ENPKRILCATFL-DGSEL 222 (362)
T ss_pred cCccceeeccCCcceeeEEcCCCCEEEEEeccEE-------EEEeccc------HhHhhhh-hccccceeeeec-CCceE
Confidence 9988777766555555778764 44555544321 1111100 0000000 011223333332 35689
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE--cCCCCeEEEEeCCCeEEEeecCCc
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGSLDKSAKLWDARTL 223 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~--s~~~~~l~s~s~dg~i~iwd~~~~ 223 (326)
++|++|+.|++||..+..+...+ .+|...|..+.+ .|++.+|+|+|.||.|++||++..
T Consensus 223 ~vG~d~~~i~~~D~ds~~~~~~~---~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 223 LVGGDNEWISLKDTDSDTPLTEF---LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEecCCceEEEeccCCCccceee---ecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999999999999886665544 589999999873 467889999999999999999875
No 119
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.9e-22 Score=171.13 Aligned_cols=235 Identities=20% Similarity=0.323 Sum_probs=184.5
Q ss_pred EEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCC
Q 020461 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS 94 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 94 (326)
-++|+ ..+.|+.| ....|++|+..++.....+.-+...|+++.|+++|.+|+.|-.+|.|.+||..+.+.+.
T Consensus 182 lldWs-s~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~------ 253 (484)
T KOG0305|consen 182 LLDWS-SANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR------ 253 (484)
T ss_pred Hhhcc-cCCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc------
Confidence 45777 34556555 44689999999998766666668899999999999999999999999999987654322
Q ss_pred CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc-CccceeEEEEecCCcEEEEeeCCCcEEEE
Q 020461 95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGPLNRTIISAGEDAIVRIW 173 (326)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~d~~i~~w 173 (326)
.+.+ |...|.+++|+ +..+.+|+.|+.|..+
T Consensus 254 ----------------------------------------------~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~ 285 (484)
T KOG0305|consen 254 ----------------------------------------------TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNH 285 (484)
T ss_pred ----------------------------------------------cccCCcCceeEEEecc--CceEEEecCCCcEEEE
Confidence 1223 77888899998 5678999999999999
Q ss_pred ECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecC
Q 020461 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 174 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~ 252 (326)
|++..+.... ...+|...|+.+.|++|+.++|+|+.|+.+.|||....++...+. +...+.+++|+|....+++.||
T Consensus 286 dvR~~~~~~~--~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 286 DVRISQHVVS--TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred EEecchhhhh--hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence 9998766554 246899999999999999999999999999999998777777764 5678999999999887666544
Q ss_pred CCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee--cCCCcEEEeecCC
Q 020461 253 QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG--GEDGYVRLHHFDP 319 (326)
Q Consensus 253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~--s~Dg~i~l~~~~~ 319 (326)
-.. ...+++|+...+..+..+. -.+.|.+|.|++..+-|+++ -.++.|+||.+..
T Consensus 364 Gs~-----------D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 364 GSA-----------DRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred CCc-----------ccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence 211 1246778877776665543 34689999999988665543 4478999999965
No 120
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=3.7e-23 Score=168.36 Aligned_cols=200 Identities=17% Similarity=0.305 Sum_probs=158.2
Q ss_pred eeeeecCCceeEEEEccCCC-EEEeecCCCCeEEEecCCCC-------eeeeccCcccceEEEEEcCC-CCeEEEEeCCC
Q 020461 4 ILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGE-------RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQ 74 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~-------~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~ 74 (326)
+.|+||++.-+.++|++... +|++++.|++|++||+.... ....+.+|...|.-++|++- ...|++++.|+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 58999999778999999765 79999999999999986432 24567899999999999984 45789999999
Q ss_pred cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (326)
Q Consensus 75 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (326)
.+.|||.++++. ++....++|.+.|++++|
T Consensus 251 ~L~iwD~R~~~~--------------------------------------------------~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 251 KLMIWDTRSNTS--------------------------------------------------KPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred eEEEEEcCCCCC--------------------------------------------------CCcccccccCCceeEEEe
Confidence 999999975311 122234678899999999
Q ss_pred ecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEE----
Q 020461 155 GPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKT---- 228 (326)
Q Consensus 155 ~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~---- 228 (326)
+|.+. .|||||.|++|++||++.-+. .+....+|...|..|.|||. ...|++++.|+.+.+||+..-...+.
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 99765 678999999999999986433 23334689999999999997 45688899999999999865332221
Q ss_pred --------Eee---ccceEEEEeCCCCCeeEEecCCCc
Q 020461 229 --------YVT---ERPVNAVTMSPLLDHVVLGGGQDA 255 (326)
Q Consensus 229 --------~~~---~~~~~~~~~s~~~~~~~~~~~~~~ 255 (326)
|.+ ...|+...|+|....++++..+|.
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN 396 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence 222 346888889999999998877774
No 121
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=9.4e-23 Score=173.94 Aligned_cols=239 Identities=22% Similarity=0.352 Sum_probs=187.8
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCee--eeccCcccceEE-EEEcC-CCCeEEEEeCCCcEEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--GTYRGHNGAVWC-CDVSR-DSMTLITGSADQTAKLW 79 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~--~~~~~h~~~V~~-~~~~~-~~~~l~s~~~d~~i~~w 79 (326)
..+.||+..|..+++.+ +-.++++|.|+++++|+-..++.+ ..+.+|.+.|.+ +++-+ ++-.+++|+.|.+|.+|
T Consensus 8 ~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred EEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 57899999998888665 446889999999999987666543 457788888876 77765 44469999999999998
Q ss_pred EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (326)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (326)
...+.. +...++||++.|.++....++.
T Consensus 87 ~~~~~~----------------------------------------------------P~~~LkgH~snVC~ls~~~~~~ 114 (745)
T KOG0301|consen 87 KLSQAE----------------------------------------------------PLYTLKGHKSNVCSLSIGEDGT 114 (745)
T ss_pred ecCCCC----------------------------------------------------chhhhhccccceeeeecCCcCc
Confidence 875433 3445678888888887766665
Q ss_pred EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEE
Q 020461 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (326)
Q Consensus 160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~ 238 (326)
+++||+|.++++|-... +... ..+|+..|.++..-|++ .++|||.|.+||+|.- +++++++. |...++.+
T Consensus 115 -~iSgSWD~TakvW~~~~--l~~~---l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL 185 (745)
T KOG0301|consen 115 -LISGSWDSTAKVWRIGE--LVYS---LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGL 185 (745)
T ss_pred -eEecccccceEEecchh--hhcc---cCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccchhheeee
Confidence 99999999999998643 3333 46899999999999988 8999999999999986 56666664 55678999
Q ss_pred EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
++-++. +++.+ ++|+ .+++|+. .++.+..+.||+.-|.+++..+++..++|+++|+++|||.-+
T Consensus 186 ~vl~~~-~flSc-sNDg-------------~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 186 AVLDDS-HFLSC-SNDG-------------SIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEecCC-CeEee-cCCc-------------eEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 988764 33443 3444 3566665 456667789999999999988889999999999999999987
Q ss_pred CC
Q 020461 319 PD 320 (326)
Q Consensus 319 ~~ 320 (326)
.-
T Consensus 250 e~ 251 (745)
T KOG0301|consen 250 EC 251 (745)
T ss_pred ce
Confidence 43
No 122
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.9e-23 Score=159.42 Aligned_cols=221 Identities=21% Similarity=0.271 Sum_probs=155.8
Q ss_pred eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461 45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124 (326)
Q Consensus 45 ~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
+..+++|.+.|++++|+.||++|+|++.|++|++|+++.-++.. + +++.
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e---H----r~~R------------------------ 127 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE---H----RCIR------------------------ 127 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh---h----hHhh------------------------
Confidence 34678999999999999999999999999999999987632210 0 0000
Q ss_pred eeeccCCCCCCCceEEEeccCccceeEEEEecCCcE-EEEeeCCCcEEEEECCCC---cccccc------ccccCcceee
Q 020461 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETG---KLLKES------DKETGHKKTI 194 (326)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~---~~~~~~------~~~~~h~~~v 194 (326)
...--+| .+.++|.|+.+- ++.+-...++++|.+... ...... ....-|+..+
T Consensus 128 --------------~nve~dh---pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~ 190 (420)
T KOG2096|consen 128 --------------QNVEYDH---PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDI 190 (420)
T ss_pred --------------ccccCCC---ceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccce
Confidence 0000112 345778888764 455566778889876432 211111 1123467778
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEee
Q 020461 195 TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 273 (326)
Q Consensus 195 ~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (326)
..+-...++.++++++.|..|.+|+++ |+.+..+.... .-.-.+.||+|..++++|-.....+ +++.+-
T Consensus 191 i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkV---------wE~~f~ 260 (420)
T KOG2096|consen 191 INIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKV---------WEPIFT 260 (420)
T ss_pred EEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceE---------EEEEec
Confidence 888888999999999999999999999 88888876543 3335678999999988775443222 222222
Q ss_pred cccc---eeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCcee
Q 020461 274 DKIL---QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN 323 (326)
Q Consensus 274 ~~~~---~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~ 323 (326)
..-+ ...+-.++||++.|..++|||++..++|.|.||++|||+.|-.|..
T Consensus 261 kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 261 KDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred cCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 2111 1223357899999999999999999999999999999999988864
No 123
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=5.3e-23 Score=163.88 Aligned_cols=211 Identities=20% Similarity=0.354 Sum_probs=160.5
Q ss_pred eeecCCceeEEEEccCC--CEEEeecCCCCeEEEecCC----------------CCeeeeccCcccceEEEEEcCCC-Ce
Q 020461 6 MKGHERPLTYLKYNKDG--DLLFSCAKDHTPTVWFADN----------------GERLGTYRGHNGAVWCCDVSRDS-MT 66 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~--~~l~s~~~d~~v~iw~~~~----------------~~~~~~~~~h~~~V~~~~~~~~~-~~ 66 (326)
..+|.+.++.+.-++-+ .+.++=+..|.|.||++.. .+.+.++.+|.+.=++|+|||-. ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34577788888777755 4677777899999998742 24567788999888999999932 24
Q ss_pred EEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCc
Q 020461 67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146 (326)
Q Consensus 67 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (326)
|+||.--+.|++|...++.=. . . ..-+.+|.
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~----v-----------------------------------d----------~~Pf~gH~ 257 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWK----V-----------------------------------D----------QRPFTGHT 257 (440)
T ss_pred cccCccccceEeeeeccCcee----e-----------------------------------c----------Cccccccc
Confidence 778888888999987764210 0 0 00134588
Q ss_pred cceeEEEEecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce
Q 020461 147 GRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (326)
Q Consensus 147 ~~i~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 225 (326)
..|-.+.|||.. ..|++||.||+|+|||++.+..-..+.. ..|...|..+.|+.+-.+||+|+.||+++|||+|+.+.
T Consensus 258 ~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~ 336 (440)
T KOG0302|consen 258 KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS 336 (440)
T ss_pred cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC
Confidence 889999999976 4889999999999999998844333222 57999999999999988999999999999999986432
Q ss_pred EEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC-CceEE
Q 020461 226 IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD-GKSFS 304 (326)
Q Consensus 226 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d-~~~la 304 (326)
- +++..++.|..+|++|.|+|. ...||
T Consensus 337 ~----------------------------------------------------~pVA~fk~Hk~pItsieW~p~e~s~ia 364 (440)
T KOG0302|consen 337 G----------------------------------------------------QPVATFKYHKAPITSIEWHPHEDSVIA 364 (440)
T ss_pred C----------------------------------------------------CcceeEEeccCCeeEEEeccccCceEE
Confidence 1 112334568899999999985 45688
Q ss_pred eecCCCcEEEeecC
Q 020461 305 SGGEDGYVRLHHFD 318 (326)
Q Consensus 305 t~s~Dg~i~l~~~~ 318 (326)
+++.|.+|.||++-
T Consensus 365 asg~D~QitiWDls 378 (440)
T KOG0302|consen 365 ASGEDNQITIWDLS 378 (440)
T ss_pred eccCCCcEEEEEee
Confidence 89999999999863
No 124
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=5e-21 Score=158.08 Aligned_cols=286 Identities=19% Similarity=0.279 Sum_probs=199.4
Q ss_pred ecCCceeEEEEccC--CCEEEe--ecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 8 GHERPLTYLKYNKD--GDLLFS--CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 8 ~h~~~i~~~~~s~~--~~~l~s--~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+..|.|++||+. |.+|.. -+.++.+.+||...+......+.-+..|....|+|.+..+......+.+.+|+.+.
T Consensus 152 ~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~ 231 (626)
T KOG2106|consen 152 FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG 231 (626)
T ss_pred cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence 35567999999974 555554 45678889999999988888888888999999999765554445557899999988
Q ss_pred CcEEEEEe-cC----CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461 84 GAQLFTFN-FD----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (326)
Q Consensus 84 ~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (326)
+....... ++ .-+.++.|.+++.++..-++..+.+ |.. ...........|++.|.++..-.+|
T Consensus 232 ~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~I------w~~------~~~~~~k~~~aH~ggv~~L~~lr~G 299 (626)
T KOG2106|consen 232 GSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILI------WSK------GTNRISKQVHAHDGGVFSLCMLRDG 299 (626)
T ss_pred CceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEE------EeC------CCceEEeEeeecCCceEEEEEecCc
Confidence 76654332 11 2345566766666655444433333 222 1122333334899999999887776
Q ss_pred cEEEEeeCCCcEEEEECCCCccccccc------------c--------------------------ccCcceeeEEEEEc
Q 020461 159 RTIISAGEDAIVRIWDTETGKLLKESD------------K--------------------------ETGHKKTITSLAKA 200 (326)
Q Consensus 159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~------------~--------------------------~~~h~~~v~~v~~s 200 (326)
. |++|+.|..|..||-+-.+ +++.. . ..+|......++..
T Consensus 300 t-llSGgKDRki~~Wd~~y~k-~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h 377 (626)
T KOG2106|consen 300 T-LLSGGKDRKIILWDDNYRK-LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH 377 (626)
T ss_pred c-EeecCccceEEeccccccc-cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC
Confidence 5 5569999999999943211 11110 0 02577788889999
Q ss_pred CCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceee
Q 020461 201 ADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 280 (326)
Q Consensus 201 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 280 (326)
|+..+++|++.|+++++|+ ..+++-+...+.+..++.|+|.+ .++++...+.. .. .+..++..
T Consensus 378 ps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w--~V------------~d~e~~~l 440 (626)
T KOG2106|consen 378 PSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRW--FV------------LDTETQDL 440 (626)
T ss_pred CChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceE--EE------------Eeccccee
Confidence 9999999999999999999 55666666667889999999998 55554433221 11 12222222
Q ss_pred eccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCceeee
Q 020461 281 IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK 325 (326)
Q Consensus 281 ~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~~~ 325 (326)
+..-. -.+++++|+|+|+|.+||.||.|+.|.|+.++.+.+-++
T Consensus 441 v~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 441 VTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred EEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE
Confidence 22112 268999999999999999999999999999998876553
No 125
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=3.9e-22 Score=170.20 Aligned_cols=300 Identities=18% Similarity=0.279 Sum_probs=207.1
Q ss_pred eeeeecCCceeEEEEccCCC---EEEeecCCCCeEEEecCCCC------------------------ee-------eecc
Q 020461 4 ILMKGHERPLTYLKYNKDGD---LLFSCAKDHTPTVWFADNGE------------------------RL-------GTYR 49 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~---~l~s~~~d~~v~iw~~~~~~------------------------~~-------~~~~ 49 (326)
..|+||.+-|..++|...+. +|+|+|+|..||||.+.-+. .+ ..+.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 56899999999999997544 89999999999999764222 01 1135
Q ss_pred CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE--ec---C---CCcceeeeecCCeEEEEEcCccceecee
Q 020461 50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF--NF---D---SPARSVDFAVGDKLAVITTDPFMELNSA 121 (326)
Q Consensus 50 ~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (326)
||...|+++.|+|.+..|+++|.|+++.+|...+..-+..- .. . ...-...|.++..++++.+. .+.
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~-----~Gg 339 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR-----TGG 339 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc-----cCc
Confidence 99999999999999999999999999999988765433222 11 1 11223345555544333221 122
Q ss_pred eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECC-CCccccccccccCcceeeEEEEEc
Q 020461 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKA 200 (326)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~h~~~v~~v~~s 200 (326)
.+.|.. .+. ..-.....+.||...|..++|+|.|.+|++.|.|.+=|++-.- ......++....-|...++|+++-
T Consensus 340 ~hlWkt-~d~--~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 340 FHLWKT-KDK--TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred EEEEec-cCc--cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 333331 110 0012233567999999999999999999999999999998754 222234555556789999999998
Q ss_pred CCCCeEEEEeCCCeEEEeecCC-------------------------------------------cce----EEE-----
Q 020461 201 ADGSHFLTGSLDKSAKLWDART-------------------------------------------LEL----IKT----- 228 (326)
Q Consensus 201 ~~~~~l~s~s~dg~i~iwd~~~-------------------------------------------~~~----~~~----- 228 (326)
+....+++|.....+|+++.-. +.. ..+
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 8667899999999999985310 000 000
Q ss_pred -------------------------EeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461 229 -------------------------YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 283 (326)
Q Consensus 229 -------------------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (326)
+.+...+.+++.+|.++.++.+-..... .--.+.+|+...-...+.
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~---------ehAvI~lw~t~~W~~~~~ 567 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLK---------EHAVIRLWNTANWLQVQE 567 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCc---------cceEEEEEeccchhhhhe
Confidence 0012235677888877766654332211 112467787776666667
Q ss_pred ccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 284 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 284 ~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
+.+|+=+|+.++|||||++|++.|.|.++.||....+
T Consensus 568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~ 604 (764)
T KOG1063|consen 568 LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQED 604 (764)
T ss_pred ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecc
Confidence 8899999999999999999999999999999987554
No 126
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=4.2e-23 Score=172.29 Aligned_cols=259 Identities=20% Similarity=0.324 Sum_probs=182.5
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC--------CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcE
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTA 76 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~--------~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i 76 (326)
+++.|.+.|..++|+|....|++|+.||++++|++.. -+.+.+|++|.++|.|+++.++++.+++|+-||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 6788999999999999999999999999999999932 25688999999999999999999999999999999
Q ss_pred EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
+.|++....-. .+. . ........+.||...+..+++|+
T Consensus 369 ~~w~~p~n~dp----------------~ds----------------------~----dp~vl~~~l~Ghtdavw~l~~s~ 406 (577)
T KOG0642|consen 369 RCWNLPPNQDP----------------DDS----------------------Y----DPSVLSGTLLGHTDAVWLLALSS 406 (577)
T ss_pred eeeccCCCCCc----------------ccc----------------------c----Ccchhccceeccccceeeeeecc
Confidence 99987521100 000 0 00112234678999999999999
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC-CeEEEEeCCCeEEEeecCCcceEEEEee----
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVT---- 231 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~---- 231 (326)
....|++++.||++++|+...... .++.....| +..+++++-... ...++...-+.--+.++.....+..+..
T Consensus 407 ~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~ 484 (577)
T KOG0642|consen 407 TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASP 484 (577)
T ss_pred cccceeeecCCceEEeeccCCcCc-cccCCcccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCC
Confidence 999999999999999999876554 222221122 233455443322 1222222223333344443333333221
Q ss_pred ----ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeec
Q 020461 232 ----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 307 (326)
Q Consensus 232 ----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s 307 (326)
...++-+..+|..+..+.+. ++ ..+++++..++..++....|...++++++.|+|.+|++|+
T Consensus 485 ~~~~~~~in~vVs~~~~~~~~~~h-ed-------------~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s 550 (577)
T KOG0642|consen 485 GPRRYPQINKVVSHPTADITFTAH-ED-------------RSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS 550 (577)
T ss_pred cccccCccceEEecCCCCeeEecc-cC-------------CceecccccccccchheeeccceecceeecCCCceEEeec
Confidence 12356677777765554432 22 1356777777888888889999999999999999999999
Q ss_pred CCCcEEEeecCCCc
Q 020461 308 EDGYVRLHHFDPDY 321 (326)
Q Consensus 308 ~Dg~i~l~~~~~~~ 321 (326)
.|+.+++|+++...
T Consensus 551 ~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 551 HDGSVRLWKLDVKT 564 (577)
T ss_pred CCceeehhhccchh
Confidence 99999999997543
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2.1e-20 Score=156.56 Aligned_cols=266 Identities=17% Similarity=0.145 Sum_probs=176.5
Q ss_pred eeecCCceeEEEEccCCCEE-EeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEE-eCCCcEEEEEccC
Q 020461 6 MKGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKLWNVET 83 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l-~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~-~~d~~i~~wd~~~ 83 (326)
+.+|. .+.+++|+|+++.+ ++++.++.+++||..+++.+..+..+.. +..++|+|+++.++++ +.|+.+++||+++
T Consensus 27 ~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 27 FPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred EECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 34343 46789999999976 5677899999999999988877766544 4678899999877554 5689999999998
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII- 162 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~- 162 (326)
++.+..+........+.+.+++..+++...... ....+.. ..+....... .......+.|+|+++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~----~~~~~d~------~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 105 RKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTN----MAHFIDT------KTYEIVDNVL-VDQRPRFAEFTADGKELWV 173 (300)
T ss_pred CeEEeEeeCCCCcceEEECCCCCEEEEEecCCC----eEEEEeC------CCCeEEEEEE-cCCCccEEEECCCCCEEEE
Confidence 877766654444566778877766555432110 1111111 1112222111 123456789999999775
Q ss_pred EeeCCCcEEEEECCCCcccccccccc--Cc--ceeeEEEEEcCCCCeEEE-EeCCCeEEEeecCCcceEEEEeeccceEE
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKET--GH--KKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKTYVTERPVNA 237 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~--~h--~~~v~~v~~s~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 237 (326)
++..++.|++||+++++....+.... .+ ......++++|++.+++. .+.++.+.+||+++++.+........+.+
T Consensus 174 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 253 (300)
T TIGR03866 174 SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQ 253 (300)
T ss_pred EcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcce
Confidence 55569999999999887655432110 01 112356889999998554 45567899999999888776665667889
Q ss_pred EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC
Q 020461 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298 (326)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~ 298 (326)
++|+|++..++++.+.++ .+.+|+...++.+..+... ...+.++|+|
T Consensus 254 ~~~~~~g~~l~~~~~~~~-------------~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSN-------------DVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEECCCCCEEEEEcCCCC-------------eEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 999999998887654333 2344555444444444433 4458888875
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=7.3e-21 Score=157.12 Aligned_cols=269 Identities=19% Similarity=0.308 Sum_probs=192.5
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 90 (326)
+.|.|++|.++|+ +++|.++|.|.||+..+....+...+|.+.|.++..-.+|. |+||+.|+.|..||-.- +.+...
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y-~k~r~~ 323 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNY-RKLRET 323 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccc-cccccc
Confidence 5689999999999 66899999999999877666666669999999999888886 55699999999999322 222222
Q ss_pred ecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461 91 NFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (326)
Q Consensus 91 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 167 (326)
+.+ ++++.+.-..++ +.+..+.. ..+...++ ..-.....+|.....-++.+|....++|++.|
T Consensus 324 elPe~~G~iRtv~e~~~d-i~vGTtrN-~iL~Gt~~------------~~f~~~v~gh~delwgla~hps~~q~~T~gqd 389 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGD-ILVGTTRN-FILQGTLE------------NGFTLTVQGHGDELWGLATHPSKNQLLTCGQD 389 (626)
T ss_pred cCchhcCCeeEEecCCCc-EEEeeccc-eEEEeeec------------CCceEEEEecccceeeEEcCCChhheeeccCc
Confidence 222 223322222122 22222211 11111110 11233445777788889999999999999999
Q ss_pred CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCee
Q 020461 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHV 247 (326)
Q Consensus 168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 247 (326)
+.+++|+ ..+..-+.. -..++.|++|+|.| .+|.|+..|...+.|.++...+.......+++++.++|+|..+
T Consensus 390 k~v~lW~--~~k~~wt~~----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 390 KHVRLWN--DHKLEWTKI----IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFL 462 (626)
T ss_pred ceEEEcc--CCceeEEEE----ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEE
Confidence 9999999 333332221 24678899999999 9999999999999999998887777667899999999999999
Q ss_pred EEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461 248 VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH 315 (326)
Q Consensus 248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~ 315 (326)
+++..+....++..+.....+ ..++...+ .+|+.+.||+|+++|.+-|-|=.|-.|
T Consensus 463 Avgs~d~~iyiy~Vs~~g~~y----------~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGRKY----------SRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred EEecCCCeEEEEEECCCCcEE----------EEeeeecC--ceeEEeeecCCCceEEeccCceEEEEE
Confidence 887665554444333222111 22333444 799999999999999999999999999
No 129
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=5.7e-22 Score=170.03 Aligned_cols=304 Identities=15% Similarity=0.211 Sum_probs=186.8
Q ss_pred eeeecCCceeEEEEccCCCEEEeec--CCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe--CCCcEEEEE
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCA--KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS--ADQTAKLWN 80 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~--~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~--~d~~i~~wd 80 (326)
++..|.++++|++||++|+|+|+|- -.-.+++|+++....+.+|..|.-.|.|++|+|.++++++.| .|..|.+||
T Consensus 73 lvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~d 152 (1080)
T KOG1408|consen 73 LVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVND 152 (1080)
T ss_pred eecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhh
Confidence 4556778999999999999999965 677899999999999999999999999999999999999877 467778887
Q ss_pred ccCCcEEEEEecCCCcceeeeecC--------------------------------------------------------
Q 020461 81 VETGAQLFTFNFDSPARSVDFAVG-------------------------------------------------------- 104 (326)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 104 (326)
.+.+.....-+....+..+.|+.+
T Consensus 153 Wr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAe 232 (1080)
T KOG1408|consen 153 WRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAE 232 (1080)
T ss_pred hhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCccccc
Confidence 542211000000000000000000
Q ss_pred CeEEEEEc--------------------------------------Cccceecee--ee-eeeeccCCCCCC----C-ce
Q 020461 105 DKLAVITT--------------------------------------DPFMELNSA--IH-VKRIARDPADQG----G-ES 138 (326)
Q Consensus 105 ~~~~~~~~--------------------------------------~~~~~~~~~--~~-~~~~~~~~~~~~----~-~~ 138 (326)
..+++... +....+... ++ +..+.+...... + +.
T Consensus 233 stfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~ 312 (1080)
T KOG1408|consen 233 STFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQP 312 (1080)
T ss_pred ceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccc
Confidence 00000000 000000000 00 000000000000 0 00
Q ss_pred EEEeccCcc----ceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-----------CC
Q 020461 139 VLILKGPQG----RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-----------DG 203 (326)
Q Consensus 139 ~~~~~~~~~----~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-----------~~ 203 (326)
-....+... -...+.|+|....+.+..+|..+.+||++.-+.+.......-|+..|..+..-| -.
T Consensus 313 ~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~ 392 (1080)
T KOG1408|consen 313 EPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPR 392 (1080)
T ss_pred cccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCc
Confidence 000001111 123577899899999999999999999987666554444456888777775433 12
Q ss_pred CeEEEEeCCCeEEEeecCCc---ceEEE----------E-------------------------eeccceEEEEeCCCCC
Q 020461 204 SHFLTGSLDKSAKLWDARTL---ELIKT----------Y-------------------------VTERPVNAVTMSPLLD 245 (326)
Q Consensus 204 ~~l~s~s~dg~i~iwd~~~~---~~~~~----------~-------------------------~~~~~~~~~~~s~~~~ 245 (326)
..++|++.|++|++||+..+ ...+. . ....-+.+++.+|++.
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 25999999999999998752 11000 0 0001267899999998
Q ss_pred eeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEEC-C--CCceEEeecCCCcEEEeecCCCce
Q 020461 246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN-P--DGKSFSSGGEDGYVRLHHFDPDYF 322 (326)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~--d~~~lat~s~Dg~i~l~~~~~~~~ 322 (326)
+++.+. .+. .+++|+...-+....+..|.+.|.|+.|| | ..++||++|.|.-|.++++-.+|.
T Consensus 473 hLAsGD--r~G------------nlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~ 538 (1080)
T KOG1408|consen 473 HLASGD--RGG------------NLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD 538 (1080)
T ss_pred eecccC--ccC------------ceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence 887642 221 23444544444455567899999999998 4 357899999999999999988874
No 130
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=2.9e-21 Score=164.97 Aligned_cols=287 Identities=18% Similarity=0.264 Sum_probs=190.5
Q ss_pred eeeeecCCceeEEEEccCCC---EEEeecCCCCeEEEecCCC--CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGD---LLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~---~l~s~~~d~~v~iw~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~ 78 (326)
+.+.||.++|+|+.|-|+.+ ++++|+.|+.|.+|.+... .++..+.+|...+.|+. .........+.|+++.+
T Consensus 48 t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~--a~~~~~~~~~ad~~v~v 125 (764)
T KOG1063|consen 48 TTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVV--ARSSVMTCKAADGTVSV 125 (764)
T ss_pred EeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEE--eeeeEEEeeccCceEEE
Confidence 57899999999999999887 8999999999999998744 35667788777666653 22222222378999999
Q ss_pred EEccCCcE--EEEEecCCC---cceeeeecCCe-EE-EEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461 79 WNVETGAQ--LFTFNFDSP---ARSVDFAVGDK-LA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (326)
Q Consensus 79 wd~~~~~~--~~~~~~~~~---~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (326)
||.+..+. ...+.+... ..++...++.+ ++ ++++.... -.+.... ..+-.....++||...|.+
T Consensus 126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~--------v~~~s~~-~d~f~~v~el~GH~DWIrs 196 (764)
T KOG1063|consen 126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFV--------VDLYSSS-ADSFARVAELEGHTDWIRS 196 (764)
T ss_pred eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceE--------EEEeccC-CcceeEEEEeeccchhhhh
Confidence 99966662 222232211 12223333222 22 22222110 0111111 1123467788999999999
Q ss_pred EEEecCCc---EEEEeeCCCcEEEEECCCCcccc---------------------cc-------ccccCcceeeEEEEEc
Q 020461 152 AVWGPLNR---TIISAGEDAIVRIWDTETGKLLK---------------------ES-------DKETGHKKTITSLAKA 200 (326)
Q Consensus 152 ~~~~~~~~---~l~s~~~d~~i~~wd~~~~~~~~---------------------~~-------~~~~~h~~~v~~v~~s 200 (326)
++|...+. +++++|+|.+||||.+.-+.... ++ ....||..-|.++.|+
T Consensus 197 l~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~ 276 (764)
T KOG1063|consen 197 LAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH 276 (764)
T ss_pred hhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc
Confidence 99987654 78999999999999764322000 00 0124899999999999
Q ss_pred CCCCeEEEEeCCCeEEEeecCCcc--eEEEEe---ec---cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEe
Q 020461 201 ADGSHFLTGSLDKSAKLWDARTLE--LIKTYV---TE---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF 272 (326)
Q Consensus 201 ~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~---~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 272 (326)
|.+..|+++|.|.++.+|...+.. =+.... .. .-..+..|+|+++.++.-+..++. ++
T Consensus 277 p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~--------------hl 342 (764)
T KOG1063|consen 277 PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF--------------HL 342 (764)
T ss_pred cchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE--------------EE
Confidence 999999999999999999876541 111111 11 124566788888666655443321 22
Q ss_pred eccc---ceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461 273 FDKI---LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH 315 (326)
Q Consensus 273 ~~~~---~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~ 315 (326)
|... .-.....+.||.+.|.+|+|+|.|.+|.|.|.|.+-|||
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeee
Confidence 3211 112234578999999999999999999999999999995
No 131
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=3e-21 Score=147.43 Aligned_cols=206 Identities=20% Similarity=0.312 Sum_probs=163.8
Q ss_pred eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeee
Q 020461 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 126 (326)
Q Consensus 47 ~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (326)
.++||..+++.+.++.+|.+|++|+.|.+..+|-...|+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe----------------------------------------- 43 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE----------------------------------------- 43 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----------------------------------------
Confidence 468999999999999999999999999999999754443
Q ss_pred eccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE
Q 020461 127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF 206 (326)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l 206 (326)
.+-..+||.+.|.++..+-+.+.+++|+.|.++++||.++|+.+.... -..+|..+.|+++|.++
T Consensus 44 -----------rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k----~~~~Vk~~~F~~~gn~~ 108 (327)
T KOG0643|consen 44 -----------RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK----TNSPVKRVDFSFGGNLI 108 (327)
T ss_pred -----------eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee----cCCeeEEEeeccCCcEE
Confidence 344567999999999999999999999999999999999999887654 34679999999999987
Q ss_pred EEEeC-----CCeEEEeecC-------CcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEee
Q 020461 207 LTGSL-----DKSAKLWDAR-------TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 273 (326)
Q Consensus 207 ~s~s~-----dg~i~iwd~~-------~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (326)
+.... -+.|.++|++ +.+++..+. ++..+..+.|.|.++.++.+..++ .+..+|.+.+.
T Consensus 109 l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G--~is~~da~~g~------ 180 (327)
T KOG0643|consen 109 LASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDG--SISIYDARTGK------ 180 (327)
T ss_pred EEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCC--cEEEEEcccCc------
Confidence 77654 3579999998 456566654 456788999999888777654333 23334433322
Q ss_pred cccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 274 DKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 274 ~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
+.+.....|...|++|.|+||..+|+|+|.|.+-++|+++.=.
T Consensus 181 -----~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 181 -----ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred -----eeeechhhhccccccccccCCcceEEecccCccceeeecccee
Confidence 2233345688899999999999999999999999999887543
No 132
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=3.6e-22 Score=155.53 Aligned_cols=225 Identities=19% Similarity=0.255 Sum_probs=165.5
Q ss_pred eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeee
Q 020461 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 126 (326)
Q Consensus 47 ~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (326)
.+..|.+++.+.+|++||.++++||.|..||+.|++..-... . ...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks--~--------------------------------~~e 152 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS--K--------------------------------PKE 152 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc--c--------------------------------hhh
Confidence 456899999999999999999999999999999987431110 0 000
Q ss_pred eccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE
Q 020461 127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF 206 (326)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l 206 (326)
+......+.-..++++-.|...|+++.|+|....|++|+.|++|+++|...-...+.+.. .....+|.++.|+|.|.+|
T Consensus 153 m~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~-~qd~~~vrsiSfHPsGefl 231 (430)
T KOG0640|consen 153 MISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKV-FQDTEPVRSISFHPSGEFL 231 (430)
T ss_pred hccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHH-hhccceeeeEeecCCCceE
Confidence 000000111245677888999999999999999999999999999999864322222111 1234689999999999999
Q ss_pred EEEeCCCeEEEeecCCcceEEEEe----eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec
Q 020461 207 LTGSLDKSAKLWDARTLELIKTYV----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG 282 (326)
Q Consensus 207 ~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 282 (326)
+.|..-.++++||+.+.+|...-. +...++++-+++.++..+.+ +.|+ .+++|+......+.
T Consensus 232 lvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTa-SkDG-------------~IklwDGVS~rCv~ 297 (430)
T KOG0640|consen 232 LVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTA-SKDG-------------AIKLWDGVSNRCVR 297 (430)
T ss_pred EEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEe-ccCC-------------cEEeeccccHHHHH
Confidence 999999999999999988866543 23468899999988766554 3443 35666655444433
Q ss_pred ccc-ccC-cceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 283 GVK-GHF-GPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 283 ~~~-~h~-~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.+. .|. +.|.+..|..+|+|+.+.+.|..++||.+-..
T Consensus 298 t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 298 TIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred HHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 332 343 47999999999999999999999999987643
No 133
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.5e-22 Score=150.01 Aligned_cols=211 Identities=21% Similarity=0.319 Sum_probs=149.8
Q ss_pred ceeeeecCCceeEEEEcc--CCCEEEeecCCCCeEEEecCCCCe--eeeccCcccceEEEEEcCC--CCeEEEEeCCCcE
Q 020461 3 PILMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRD--SMTLITGSADQTA 76 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~--~~~~l~s~~~d~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d~~i 76 (326)
+..|+||.+++..++|.. -|.+||+|+-||.|.||.-.+++. .++...|.+.|++++|.|. |-.|+.++.||+|
T Consensus 49 l~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v 128 (299)
T KOG1332|consen 49 LAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV 128 (299)
T ss_pred eeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence 367999999999999986 799999999999999999888854 4556789999999999885 5689999999999
Q ss_pred EEEEccCCc--EEEEE--ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEE
Q 020461 77 KLWNVETGA--QLFTF--NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (326)
Q Consensus 77 ~~wd~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (326)
.+.+.+... ....+ .++..++++++.|...- +..+. .+...
T Consensus 129 svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~----------------------------g~~~~--~~~~~----- 173 (299)
T KOG1332|consen 129 SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP----------------------------GSLVD--QGPAA----- 173 (299)
T ss_pred EEEEEcCCCCccchhhhhccccccceeeecCcCCC----------------------------ccccc--cCccc-----
Confidence 999886541 11111 12222333333321000 00000 00000
Q ss_pred EEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC----CeEEEEeCCCeEEEeecCCc-----
Q 020461 153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG----SHFLTGSLDKSAKLWDARTL----- 223 (326)
Q Consensus 153 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~----~~l~s~s~dg~i~iwd~~~~----- 223 (326)
.-+.|++||.|..|+||+...++...+.. +.+|..-|+.++|.|.- .+++++|.||++.||-.+.-
T Consensus 174 ----~~krlvSgGcDn~VkiW~~~~~~w~~e~~-l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk 248 (299)
T KOG1332|consen 174 ----KVKRLVSGGCDNLVKIWKFDSDSWKLERT-LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK 248 (299)
T ss_pred ----ccceeeccCCccceeeeecCCcchhhhhh-hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc
Confidence 01469999999999999998875443322 56899999999999863 47999999999999976521
Q ss_pred -ceEEEEeeccceEEEEeCCCCCeeEEecCCCc
Q 020461 224 -ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA 255 (326)
Q Consensus 224 -~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 255 (326)
.++.+ .+..+..+.||..++.+.+++|+..
T Consensus 249 ~tll~~--f~~~~w~vSWS~sGn~LaVs~GdNk 279 (299)
T KOG1332|consen 249 KTLLEE--FPDVVWRVSWSLSGNILAVSGGDNK 279 (299)
T ss_pred cccccc--CCcceEEEEEeccccEEEEecCCcE
Confidence 11111 2346888999999999999887654
No 134
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=9.3e-23 Score=161.73 Aligned_cols=242 Identities=20% Similarity=0.324 Sum_probs=173.2
Q ss_pred eeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceee
Q 020461 45 LGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAI 122 (326)
Q Consensus 45 ~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (326)
+..+.+|...|.|++=+|.. ..++||+.||.|++||+.+.++...+.. .+.+.++.+.. +.++.++.+...
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtv------ 131 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTV------ 131 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcce------
Confidence 44568999999999999876 6799999999999999999888877764 45777776665 444444444322
Q ss_pred eeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC
Q 020461 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD 202 (326)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~ 202 (326)
+.|.+.- .+..++-+ .+.+..+..+..+..++|+|. .|.|||...-.+++.+... -..+.++.++|.
T Consensus 132 K~wk~~~-------~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG---~Dti~svkfNpv 198 (433)
T KOG0268|consen 132 KQWKIDG-------PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG---ADSISSVKFNPV 198 (433)
T ss_pred eeeeccC-------Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecC---CCceeEEecCCC
Confidence 2222111 12222211 123334444445667888875 4889998766666655432 246889999996
Q ss_pred CC-eEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeee
Q 020461 203 GS-HFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEI 281 (326)
Q Consensus 203 ~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (326)
.. .|++|..|+.|.+||+++..+++++......|.++|+|.. ..++++.+|. .++.+|.|. ...++
T Consensus 199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea-fnF~~a~ED~-nlY~~DmR~-----------l~~p~ 265 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA-FNFVAANEDH-NLYTYDMRN-----------LSRPL 265 (433)
T ss_pred cchheeeeccCCceEEEecccCCccceeeeeccccceecCccc-cceeeccccc-cceehhhhh-----------hcccc
Confidence 44 5667779999999999999999999888889999999943 4445555543 344445432 34567
Q ss_pred ccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 282 GGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 282 ~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
...++|.+.|.+|+|||.|+-|++||.|.+||||....
T Consensus 266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred hhhcccceeEEEeccCCCcchhccccccceEEEeecCC
Confidence 77899999999999999999999999999999987753
No 135
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.3e-21 Score=143.95 Aligned_cols=194 Identities=19% Similarity=0.272 Sum_probs=130.4
Q ss_pred eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe------------------------------------------
Q 020461 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER------------------------------------------ 44 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~------------------------------------------ 44 (326)
+.|++.|+|.+|||.|++|++||+|.+|++...+...+
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 35889999999999999999999999999875432211
Q ss_pred ----------eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCc
Q 020461 45 ----------LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP 114 (326)
Q Consensus 45 ----------~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (326)
.+.+.+|++-|.++- +=++-.+++|+.|.+||+||++-+.++..+..+
T Consensus 166 y~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------------- 223 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------------- 223 (350)
T ss_pred EEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCc---------------------
Confidence 111234555554441 113445556666666666665443332211100
Q ss_pred cceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceee
Q 020461 115 FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194 (326)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v 194 (326)
..+.+ -..+.|..++..|.|+.|++|-.|....+||++.++.+..+ ..|...|
T Consensus 224 ----------------~~~~g--------lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f---~phsadi 276 (350)
T KOG0641|consen 224 ----------------FHDGG--------LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF---HPHSADI 276 (350)
T ss_pred ----------------ccCCC--------cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee---CCCccce
Confidence 00000 01356888999999999999999999999999988877654 4799999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE------eeccceEEEEeCCCCCeeEEe
Q 020461 195 TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY------VTERPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 195 ~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~s~~~~~~~~~ 250 (326)
.++.|+|...++++++.|..|++-|++. .+.+++ .+...+--+-|+|..-.++.+
T Consensus 277 r~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred eEEEeCCCceEEEEecccceEEEeeccc-chhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 9999999999999999999999999873 222222 122344455677765444433
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.3e-22 Score=162.73 Aligned_cols=191 Identities=25% Similarity=0.423 Sum_probs=150.8
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecC---------CCCeeeeccCcccceEEEEEcCC--CCeEEEEeCC
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---------NGERLGTYRGHNGAVWCCDVSRD--SMTLITGSAD 73 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~---------~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d 73 (326)
++.+|-.+|+|+.|+-||.+|+|||.||.|.+|.+. +-+..+.|.+|+-+|+.+...+. ..+++|+|.|
T Consensus 118 v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D 197 (476)
T KOG0646|consen 118 VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED 197 (476)
T ss_pred HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCC
Confidence 457899999999999999999999999999999653 23456788999999998877653 4589999999
Q ss_pred CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461 74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (326)
Q Consensus 74 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (326)
.++|+||+..+..+..+.++.+ +.+++
T Consensus 198 ~t~k~wdlS~g~LLlti~fp~s-----------------------------------------------------i~av~ 224 (476)
T KOG0646|consen 198 RTIKLWDLSLGVLLLTITFPSS-----------------------------------------------------IKAVA 224 (476)
T ss_pred ceEEEEEeccceeeEEEecCCc-----------------------------------------------------ceeEE
Confidence 9999999999887766554433 44556
Q ss_pred EecCCcEEEEeeCCCcEEEEECCCCc--cc-----------cccccccCcce--eeEEEEEcCCCCeEEEEeCCCeEEEe
Q 020461 154 WGPLNRTIISAGEDAIVRIWDTETGK--LL-----------KESDKETGHKK--TITSLAKAADGSHFLTGSLDKSAKLW 218 (326)
Q Consensus 154 ~~~~~~~l~s~~~d~~i~~wd~~~~~--~~-----------~~~~~~~~h~~--~v~~v~~s~~~~~l~s~s~dg~i~iw 218 (326)
.+|.+..++.|+.+|.|.+.++..-. .. ..+....||.. .|+|++++.||..|++|+.||.+++|
T Consensus 225 lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 225 LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVW 304 (476)
T ss_pred EcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEE
Confidence 66666777778888877777664322 10 12333467887 99999999999999999999999999
Q ss_pred ecCCcceEEEEe-eccceEEEEeCCCCCeeE
Q 020461 219 DARTLELIKTYV-TERPVNAVTMSPLLDHVV 248 (326)
Q Consensus 219 d~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~ 248 (326)
|+.+.++++++. ...+|+.+.+.|.-...+
T Consensus 305 di~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 305 DIYSKQCIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred ecchHHHHHHHhhhccccceeEeecccccee
Confidence 999999999987 567888888866543333
No 137
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4.5e-21 Score=149.22 Aligned_cols=233 Identities=18% Similarity=0.256 Sum_probs=166.3
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
++.-.|.+++.+.+|.++ ..+++|+.||.|+++|+.+++.. .+-.|..+|.|+.+++....+++||+|++|++||...
T Consensus 48 ~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 48 KLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred hhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence 445568999999999984 45889999999999999988754 4557999999999998878899999999999999875
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
......+.. ...|.++.. .+..|+.
T Consensus 126 ~~~~~~~d~-----------------------------------------------------~kkVy~~~v--~g~~LvV 150 (323)
T KOG1036|consen 126 KVVVGTFDQ-----------------------------------------------------GKKVYCMDV--SGNRLVV 150 (323)
T ss_pred ccccccccc-----------------------------------------------------CceEEEEec--cCCEEEE
Confidence 222111100 012222222 2567889
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE----Ee---------
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT----YV--------- 230 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~--------- 230 (326)
|..|..+.+||+++-....+. ....-...+.++++-|++.=.+++|-||.|.+=.+...++.++ |.
T Consensus 151 g~~~r~v~iyDLRn~~~~~q~-reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~ 229 (323)
T KOG1036|consen 151 GTSDRKVLIYDLRNLDEPFQR-RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT 229 (323)
T ss_pred eecCceEEEEEcccccchhhh-ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc
Confidence 999999999999875544322 2334567899999999888899999999987755443311111 11
Q ss_pred -eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecC
Q 020461 231 -TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE 308 (326)
Q Consensus 231 -~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~ 308 (326)
...||++++|+|....++++|+++. +..|+....+.+..+..-..-|-+++|+-||..||.++.
T Consensus 230 ~~~yPVNai~Fhp~~~tfaTgGsDG~--------------V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 230 EIIYPVNAIAFHPIHGTFATGGSDGI--------------VNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEEEeceeEeccccceEEecCCCce--------------EEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 1247999999999776666555432 234554444444455544456999999999999999975
No 138
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=7.4e-22 Score=150.44 Aligned_cols=289 Identities=19% Similarity=0.241 Sum_probs=191.0
Q ss_pred CCc-eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc-CcccceEEEEEcCCCCeEEEEeCCCcEEE
Q 020461 1 MRP-ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (326)
Q Consensus 1 ~~~-~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~~~d~~i~~ 78 (326)
|+| -+|++|.+.++++.|..++. |++|..-|.|.+|.+.+...+..++ .|...|+.+..-|+ ..|.+-+.|.++.+
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 345 57889999999999998776 8899999999999999988888888 46678999887776 56889999999999
Q ss_pred EEccCCcEEEEEecCCCcceeee-----ecCCe----EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe----ccC
Q 020461 79 WNVETGAQLFTFNFDSPARSVDF-----AVGDK----LAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL----KGP 145 (326)
Q Consensus 79 wd~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 145 (326)
|++..+.-+..-. -..+++.| .++.+ ......+...+ .+..+ ......+... .+.
T Consensus 82 w~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde----~h~~D------~g~~tqv~i~dd~~~~K 149 (323)
T KOG0322|consen 82 WTIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE----THKQD------GGDTTQVQIADDSERSK 149 (323)
T ss_pred EEccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccch----hhhhc------cCccceeEccCchhccc
Confidence 9997654332211 11111111 11111 00100000000 00000 0000011111 122
Q ss_pred ccceeEEEEecC-C--cEEEEeeCCCcEEEEECCCCccccc-------cccccCcceeeEEEEEcCCCCeEEEEeCCCeE
Q 020461 146 QGRINRAVWGPL-N--RTIISAGEDAIVRIWDTETGKLLKE-------SDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215 (326)
Q Consensus 146 ~~~i~~~~~~~~-~--~~l~s~~~d~~i~~wd~~~~~~~~~-------~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i 215 (326)
.+.+.+..+..+ + -.++.|.++|.+.+||+.++..+-. ......|..+|+++.+.+.-..=++|+.+..+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence 344555544332 2 2567888999999999988633221 12234689999999998876667889999999
Q ss_pred EEeecCCc--ce-EEE-Eee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcc
Q 020461 216 KLWDARTL--EL-IKT-YVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 290 (326)
Q Consensus 216 ~iwd~~~~--~~-~~~-~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 290 (326)
..|.++-. .+ ++. +.. ..-++.+.+.|+++.++++|. | + ++++|...+..++..++.|.+.
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGW-D--------~-----RiRVyswrtl~pLAVLkyHsag 295 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGW-D--------H-----RIRVYSWRTLNPLAVLKYHSAG 295 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCcEEeeccc-C--------C-----cEEEEEeccCCchhhhhhhhcc
Confidence 99987632 22 111 111 234788899999887776653 3 2 2455566667778889999999
Q ss_pred eeEEEECCCCceEEeecCCCcEEEeec
Q 020461 291 INALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 291 v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
|++++|+||...+|++|.|++|.||.+
T Consensus 296 vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 296 VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999985
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=8.5e-22 Score=162.61 Aligned_cols=237 Identities=16% Similarity=0.195 Sum_probs=185.4
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe--eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
...|......|||+.|++|+.-.++.|||+..... ..++..-.....+++.+||.+..+++..||.|.|||+..-.
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-- 542 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-- 542 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce--
Confidence 35677888999999999999999999999986643 23343334467889999999999999999999999986432
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 167 (326)
.+..++||...+.|+.++++|..|-|||-|
T Consensus 543 --------------------------------------------------~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 543 --------------------------------------------------LVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred --------------------------------------------------eeecccCCCCCceeEEecCCCceeecCCCc
Confidence 234467888889999999999999999999
Q ss_pred CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCee
Q 020461 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHV 247 (326)
Q Consensus 168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 247 (326)
++||.||+++++.+... .....|.++.+.|++..++.|-.++.+-+-.....+..+-..++..|-++.|++.|.++
T Consensus 573 ntvRcWDlregrqlqqh----dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQH----DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred cceeehhhhhhhhhhhh----hhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCcee
Confidence 99999999988765432 34577999999999999999999999988887665554444567889999999999999
Q ss_pred EEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 248 VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
+.+|.++-...+ .... ...+|.. ...+.|.++.+|.|.++++|||-|....|+.+
T Consensus 649 vStGkDnlLnaw--rtPy---GasiFqs----------kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 649 VSTGKDNLLNAW--RTPY---GASIFQS----------KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecCchhhhhhc--cCcc---ccceeec----------cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 888765532221 1111 1112221 12467999999999999999999998888654
No 140
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=4.6e-21 Score=163.46 Aligned_cols=274 Identities=14% Similarity=0.226 Sum_probs=194.1
Q ss_pred ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe
Q 020461 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 91 (326)
.|..++|-|||..|+.+.. ..+.+||.++|....++++|...|+|++|+.||+.++||+.|+.|.+|+.+-. -+..+.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~LkYS 91 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GILKYS 91 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ceeeec
Confidence 7899999999987776644 47899999999999999999999999999999999999999999999987532 233445
Q ss_pred cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEE
Q 020461 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 171 (326)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~ 171 (326)
+...+.+..|.|-+...+.+.-. ...+|..... .+.. ..-..++.+++|..+|++++.|-.||+|.
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLs------dFglWS~~qK-------~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIs 157 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLS------DFGLWSPEQK-------SVSK-HKSSSRIICCSWTNDGQYLALGMFNGTIS 157 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchh------hccccChhhh-------hHHh-hhhheeEEEeeecCCCcEEEEeccCceEE
Confidence 55556666666544333222111 1112211110 0000 01135688999999999999999999999
Q ss_pred EEECCCCccccccccccCcceeeEEEEEcCCC-----CeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCe
Q 020461 172 IWDTETGKLLKESDKETGHKKTITSLAKAADG-----SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDH 246 (326)
Q Consensus 172 ~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~ 246 (326)
+=+-. ++.-..+....|...+|.+++|+|.. ..++......++.++.+.....-+.-..+-...|+.+-++|+.
T Consensus 158 iRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 158 IRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEY 236 (1081)
T ss_pred eecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcE
Confidence 87543 33322334444667899999999863 3588888888998888754332223333446778889999999
Q ss_pred eEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 247 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
++++|.+....+. ... +..++.+.....+|++++..|++++.+.|+.||+|--+++
T Consensus 237 ~LiGGsdk~L~~f--------------TR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 237 ILLGGSDKQLSLF--------------TRD-GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEccCCCceEEE--------------eec-CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 9888766543222 211 3334445556679999999999999999999999987765
No 141
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.8e-21 Score=151.55 Aligned_cols=282 Identities=13% Similarity=0.196 Sum_probs=185.8
Q ss_pred CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcC--CCCeEEEEeCCCcEEEEEccCCcEEEEEec--C--CCc
Q 020461 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLWNVETGAQLFTFNF--D--SPA 96 (326)
Q Consensus 23 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~--~~~ 96 (326)
..+|++-++|+|++||..++..+..|++|.+.++.+.|.. ....+.+|+.||+||+||++.......+.+ . .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 3588888999999999999999999999999999999976 456899999999999999987655444433 2 234
Q ss_pred ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEEEEeeCCCcEEEEEC
Q 020461 97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDT 175 (326)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~~wd~ 175 (326)
.+++......+.+++++.. .......+|++...... .......|..-|+++.|+|.. ..|++|+.||.|.++|+
T Consensus 121 ~~ld~nck~~ii~~GtE~~-~s~A~v~lwDvR~~qq~----l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELT-RSDASVVLWDVRSEQQL----LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred eEeeccCcCCeEEeccccc-cCceEEEEEEeccccch----hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 4444444556666554422 22333445555432210 122345788999999999976 58899999999999999
Q ss_pred CCCccccccccccCcceeeEEEEEcCCC-CeEEEEeCCCeEEEeecCCcceEEEEeeccc-----------eEEEE-eCC
Q 020461 176 ETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVTERP-----------VNAVT-MSP 242 (326)
Q Consensus 176 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~~~-~s~ 242 (326)
+.-...-.+....-|...|.++.|..++ +.+.+-+...+..+|+++.+.+...+..+.- -..+. .+|
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~ 275 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSP 275 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccC
Confidence 7543221122223466779999999887 4588899999999999988776554432200 00111 224
Q ss_pred CCCee-EEecCCC-cc-eeEeecccCceeeeEeecccceeeeccccc-cCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 243 LLDHV-VLGGGQD-AS-AVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 243 ~~~~~-~~~~~~~-~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
....+ .++++.. .. .+-+-|.. ......+...+.+ |...|+++.|...+.++.||++||.+.+|..+
T Consensus 276 ~~~~~~~l~g~~~n~~~~~~~~~~~---------s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 276 GDKDTCALAGTDSNKGTIFPLVDTS---------SGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CCcceEEEeccccCceeEEEeeecc---------cccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 33333 3333211 11 11110100 0111223334455 77788999999899999999999999999954
No 142
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=1.6e-21 Score=155.44 Aligned_cols=205 Identities=20% Similarity=0.297 Sum_probs=153.6
Q ss_pred Cc-eeeeecCCceeEEEEccCC-CEEEeecCCCCeEEEecCCCCee---eeccCcccceEEEEEcCCC-CeEEEEeCCCc
Q 020461 2 RP-ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERL---GTYRGHNGAVWCCDVSRDS-MTLITGSADQT 75 (326)
Q Consensus 2 ~~-~~~~~h~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~---~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~ 75 (326)
|| -.+.+|...=+.++|||-. ..|++|..-+.|++|...+|... .-|.+|+..|..|.|||.. ..|+|||-|++
T Consensus 202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs 281 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS 281 (440)
T ss_pred CceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce
Confidence 55 4567888888999999942 34888888899999998888653 3567899999999999964 58999999999
Q ss_pred EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (326)
Q Consensus 76 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (326)
|+|||++.+... .....+.|.+-|+-+.|+
T Consensus 282 IrIWDiRs~~~~--------------------------------------------------~~~~~kAh~sDVNVISWn 311 (440)
T KOG0302|consen 282 IRIWDIRSGPKK--------------------------------------------------AAVSTKAHNSDVNVISWN 311 (440)
T ss_pred EEEEEecCCCcc--------------------------------------------------ceeEeeccCCceeeEEcc
Confidence 999999865321 111225677888999999
Q ss_pred cCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcc----------
Q 020461 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLE---------- 224 (326)
Q Consensus 156 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~---------- 224 (326)
..-.+|++|+.||+++|||+++.+.-..+....-|..+|+++.|+|. ...|++++.|.+|.+||+..-.
T Consensus 312 r~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~ 391 (440)
T KOG0302|consen 312 RREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAA 391 (440)
T ss_pred CCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccc
Confidence 88889999999999999999875543333334569999999999985 5678889999999999975311
Q ss_pred -eEEE------Ee--eccceEEEEeCCCCCeeEEecCCCcc
Q 020461 225 -LIKT------YV--TERPVNAVTMSPLLDHVVLGGGQDAS 256 (326)
Q Consensus 225 -~~~~------~~--~~~~~~~~~~s~~~~~~~~~~~~~~~ 256 (326)
.+.. |. ....+.-+.|+++...++++.+-++.
T Consensus 392 ~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 392 EGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 0011 11 12345567788887777766555543
No 143
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=3.8e-21 Score=154.75 Aligned_cols=275 Identities=21% Similarity=0.336 Sum_probs=190.4
Q ss_pred CCceeEEEEccCCC-EEEeecCCCCeEEEecCCCC---------eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEE
Q 020461 10 ERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGE---------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (326)
Q Consensus 10 ~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~---------~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~w 79 (326)
..++..+.|.+++. .|+||+.|..|+||-+..++ ....+..|+.+|+++.|+|+|+.|+||+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35789999999877 99999999999999765332 234677899999999999999999999999999999
Q ss_pred EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (326)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (326)
-... ..+. ..+. ..+. ..+.=.....+++|...|..++|+|++.
T Consensus 93 k~~~-~~~~--~~d~---e~~~------------------------------~ke~w~v~k~lr~h~~diydL~Ws~d~~ 136 (434)
T KOG1009|consen 93 KQGD-VRIF--DADT---EADL------------------------------NKEKWVVKKVLRGHRDDIYDLAWSPDSN 136 (434)
T ss_pred EecC-cCCc--cccc---hhhh------------------------------CccceEEEEEecccccchhhhhccCCCc
Confidence 7543 1000 0000 0000 0000012345678999999999999999
Q ss_pred EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe---------
Q 020461 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--------- 230 (326)
Q Consensus 160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------- 230 (326)
++++++.|.++++||+..|+..... .+|..-+..++|+|-++++++=+.|...+.+.......++...
T Consensus 137 ~l~s~s~dns~~l~Dv~~G~l~~~~---~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~ 213 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHAGQLLAIL---DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAF 213 (434)
T ss_pred eeeeeeccceEEEEEeccceeEeec---cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeeccc
Confidence 9999999999999999999876644 4789999999999999999999999877666654332222111
Q ss_pred -----------e-c---cceEEEEeCCCCCeeEEecCC------C-cceeEeeccc------------------------
Q 020461 231 -----------T-E---RPVNAVTMSPLLDHVVLGGGQ------D-ASAVTTTDHR------------------------ 264 (326)
Q Consensus 231 -----------~-~---~~~~~~~~s~~~~~~~~~~~~------~-~~~~~~~d~~------------------------ 264 (326)
+ + .-..-++|+|++..++..++- - ....+.++..
T Consensus 214 ~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pV 293 (434)
T KOG1009|consen 214 NEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPV 293 (434)
T ss_pred CCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeee
Confidence 1 0 012356788888777654321 0 0001111110
Q ss_pred -----C-------------------ceeeeEeecccceeeeccc-cccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 265 -----A-------------------GKFEAKFFDKILQEEIGGV-KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 265 -----~-------------------~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
. .+..+++|+..+..++... .-|..+|++++||+||..|+..|.||...+--|++
T Consensus 294 y~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 294 YYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred EEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 0 0112234444443333221 24778999999999999999999999999999988
Q ss_pred Ccee
Q 020461 320 DYFN 323 (326)
Q Consensus 320 ~~~~ 323 (326)
..+-
T Consensus 374 ~elg 377 (434)
T KOG1009|consen 374 WELG 377 (434)
T ss_pred hhcc
Confidence 8765
No 144
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6.8e-21 Score=160.31 Aligned_cols=254 Identities=23% Similarity=0.327 Sum_probs=183.6
Q ss_pred eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEE--EE-cCccceeceee
Q 020461 46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV--IT-TDPFMELNSAI 122 (326)
Q Consensus 46 ~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~ 122 (326)
..+++|++.|.+|+..|.|.+|++|+.||+||+|.+.+|.++..++++..+.++.|.+...+.+ ++ ....+.++..+
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 3568999999999999999999999999999999999999999999999999999987654332 22 22222222111
Q ss_pred e----e---ee-ec-------------cC-C--CCCCCceEEEeccCccceeEEEEecCCcEEEEeeC---CCcEEEEEC
Q 020461 123 H----V---KR-IA-------------RD-P--ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRIWDT 175 (326)
Q Consensus 123 ~----~---~~-~~-------------~~-~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---d~~i~~wd~ 175 (326)
. . .. +. .+ . ..+....+...-.|...|.++.|+..|.+|++..- ...|.|.++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 1 0 00 00 00 0 00011112334457788999999999999987654 346888888
Q ss_pred CCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEEeCCCCCeeEEecCCC
Q 020461 176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 176 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~ 254 (326)
..++....+.. ..+.+.++.|+|...+|+.++. ..|+|||+..++.++++... ..+..++++|.|+.+++++-..
T Consensus 554 SK~~sQ~PF~k---skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 554 SKRKSQSPFRK---SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred ccccccCchhh---cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 76554433332 2456899999999999999997 47999999998888887544 5689999999999998875443
Q ss_pred cceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461 255 ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 255 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
...+.-.| ..-++...++-|...|++|+|++.-.+||+|+.||++.||+
T Consensus 630 k~~WfDld-------------lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 630 KMCWFDLD-------------LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eeEEEEcc-------------cCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 32222111 11234556778999999999999999999999999999975
No 145
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.4e-21 Score=151.56 Aligned_cols=211 Identities=24% Similarity=0.438 Sum_probs=160.5
Q ss_pred CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceee
Q 020461 43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAI 122 (326)
Q Consensus 43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (326)
.+++.+.||...||-++.......+.+++.|.+.++|.++++.++..
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~--------------------------------- 185 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT--------------------------------- 185 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee---------------------------------
Confidence 35677889999999998766566899999999999999988766432
Q ss_pred eeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEE------CCCC--------c---------
Q 020461 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD------TETG--------K--------- 179 (326)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd------~~~~--------~--------- 179 (326)
..||.+.|+++.|++.+.++++++.|++-.||. ..+. +
T Consensus 186 -------------------Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~ 246 (481)
T KOG0300|consen 186 -------------------YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEH 246 (481)
T ss_pred -------------------ecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccc
Confidence 357888899999999888999999999999985 1110 0
Q ss_pred -------------cc-cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCC
Q 020461 180 -------------LL-KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL 244 (326)
Q Consensus 180 -------------~~-~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~ 244 (326)
.+ ..+....+|...|.+..|-..|+.+++++.|.+..+||+++++.+..+. ++...+-++-+|..
T Consensus 247 ~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ 326 (481)
T KOG0300|consen 247 NRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ 326 (481)
T ss_pred ccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcc
Confidence 00 0011235788999999999999999999999999999999999998875 44566677778876
Q ss_pred CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
..++.+ +.|.. +..||.|. ....+..++||...|+++.|+.| ..+++||.|.+|++|++++
T Consensus 327 rLVvTs-SrDtT-FRLWDFRe-----------aI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 327 RLVVTS-SRDTT-FRLWDFRE-----------AIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred eEEEEe-ccCce-eEeccchh-----------hcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeecc
Confidence 655544 33332 22333332 23446678999999999999864 4578899999999999875
No 146
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.7e-21 Score=167.98 Aligned_cols=196 Identities=16% Similarity=0.233 Sum_probs=156.8
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 84 (326)
+|.-..-++.+++|+-+|+++|.||.|-.|++-+..+......+++|.++|.++.|+|++++||+.+-||+|++||++++
T Consensus 91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence 34445567899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (326)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 164 (326)
.+...+..-.+... . .....+..++|+|++..++..
T Consensus 171 ~~~~tl~~v~k~n~----------------------------------~----------~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 171 ILSKTLTGVDKDNE----------------------------------F----------ILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred hhhhhcccCCcccc----------------------------------c----------cccceeeeeeecCCCCeEEee
Confidence 65443321000000 0 002345678999999999999
Q ss_pred eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCC
Q 020461 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244 (326)
Q Consensus 165 ~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~ 244 (326)
+.|+.|++|+....+....+... .+...++.++|+|+|.|||+++.||.|.+||.++.+. ......|.+++|.|++
T Consensus 207 ~~d~~Vkvy~r~~we~~f~Lr~~-~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQFKLRDK-LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNA 282 (933)
T ss_pred ccCCeEEEEccCCceeheeeccc-ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCC
Confidence 99999999999988776665543 3344499999999999999999999999999998332 2234578889999887
Q ss_pred CeeE
Q 020461 245 DHVV 248 (326)
Q Consensus 245 ~~~~ 248 (326)
+.+-
T Consensus 283 n~it 286 (933)
T KOG1274|consen 283 NAIT 286 (933)
T ss_pred CeeE
Confidence 7543
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.1e-20 Score=155.91 Aligned_cols=220 Identities=14% Similarity=0.209 Sum_probs=172.4
Q ss_pred eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecC
Q 020461 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD 93 (326)
Q Consensus 14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 93 (326)
.|++......++++|+..+.|+|||+....+.+.+++|+..|+++.+.-...++++++..|-|.+..+.++.....|..+
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence 45555556689999999999999999977788889999999999999988999999999999999988776543332211
Q ss_pred CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE-EEEeeCCCcEEE
Q 020461 94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT-IISAGEDAIVRI 172 (326)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~d~~i~~ 172 (326)
+ ...+.-+.|+|..+. |.+++.+|+|.+
T Consensus 163 -----------------------------------------s----------gqsvRll~ys~skr~lL~~asd~G~Vtl 191 (673)
T KOG4378|consen 163 -----------------------------------------S----------GQSVRLLRYSPSKRFLLSIASDKGAVTL 191 (673)
T ss_pred -----------------------------------------C----------CCeEEEeecccccceeeEeeccCCeEEE
Confidence 0 112345667777664 558999999999
Q ss_pred EECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEec
Q 020461 173 WDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 173 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 251 (326)
||+......... ...|..+...++|+|- ...|++.+.|..|.+||.++......+.-..+...++|+++|-.++++.
T Consensus 192 wDv~g~sp~~~~--~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 192 WDVQGMSPIFHA--SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred EeccCCCcccch--hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeec
Confidence 999876665543 3569999999999985 5568899999999999999999888888888999999999998777655
Q ss_pred CCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (326)
Q Consensus 252 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d 299 (326)
..+. +..+|.|. ...++..+..|...|++++|-|.
T Consensus 270 s~G~--~i~YD~R~-----------~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 270 SKGE--LIAYDMRS-----------TKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred CCce--EEEEeccc-----------CCCCceEeeecccceeEEEeeec
Confidence 4432 33444443 24556778889999999999664
No 148
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=2.7e-20 Score=144.18 Aligned_cols=229 Identities=21% Similarity=0.312 Sum_probs=163.3
Q ss_pred cCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeee
Q 020461 49 RGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRI 127 (326)
Q Consensus 49 ~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (326)
+-|.+.|+++.+.+ .++++++|+.||.|.+||++....-..- .+ ..+ ..+ .+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s-------~l--i~k-~~c-----------------~v 92 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS-------GL--IAK-HKC-----------------IV 92 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc-------cc--eeh-eee-----------------ec
Confidence 46889999999977 6899999999999999999764321000 00 000 000 00
Q ss_pred ccCCCCCCCceEEEeccCccceeEEEEecC-CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC---C
Q 020461 128 ARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD---G 203 (326)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~---~ 203 (326)
..+ .-.+|.-.|..+.|=|. ..+|.+++.|.++++||.++-+....+. -++.|.+-++||= .
T Consensus 93 ~~~----------h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~----me~~VYshamSp~a~sH 158 (397)
T KOG4283|consen 93 AKQ----------HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK----MEGKVYSHAMSPMAMSH 158 (397)
T ss_pred ccc----------CCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee----cCceeehhhcChhhhcc
Confidence 000 11356667788888774 4688899999999999998866554442 3456777777763 3
Q ss_pred CeEEEEeCCCeEEEeecCCcceEEEEee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc---ee
Q 020461 204 SHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL---QE 279 (326)
Q Consensus 204 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~ 279 (326)
.++|+|..|-.|++.|+++|.+.+.+.. ...+.++.|+|..+.++.+|+-|+. +..||.|...-.....+.-. ..
T Consensus 159 cLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p 237 (397)
T KOG4283|consen 159 CLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPP 237 (397)
T ss_pred eEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCc
Confidence 4678888899999999999999888864 4579999999999999888877764 55677765432222323211 11
Q ss_pred eeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 280 EIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 280 ~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
.+..-..|.+.|+.++|+.|+.++++++.|..+|+|+...
T Consensus 238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 1223457999999999999999999999999999998764
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=6.3e-21 Score=164.82 Aligned_cols=200 Identities=18% Similarity=0.292 Sum_probs=155.3
Q ss_pred eeeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEc
Q 020461 4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~ 81 (326)
+++..|+-.+++++|++. .++|++||.||+|++||+....-+.++.+....|..+.|+| .+..|+++...|.+++||+
T Consensus 127 ~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDl 206 (839)
T KOG0269|consen 127 TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDL 206 (839)
T ss_pred hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeec
Confidence 467889999999999985 57899999999999999999999999999888999999998 4678999999999999999
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
+.... +...+..|.++|.++.|+|++.+|
T Consensus 207 Rqp~r---------------------------------------------------~~~k~~AH~GpV~c~nwhPnr~~l 235 (839)
T KOG0269|consen 207 RQPDR---------------------------------------------------CEKKLTAHNGPVLCLNWHPNREWL 235 (839)
T ss_pred cCchh---------------------------------------------------HHHHhhcccCceEEEeecCCCcee
Confidence 75321 222345789999999999999999
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe-EEEEeC--CCeEEEeecCCcc-eEEEEe-eccceE
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSL--DKSAKLWDARTLE-LIKTYV-TERPVN 236 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~s~--dg~i~iwd~~~~~-~~~~~~-~~~~~~ 236 (326)
||||.|+.|+|||..+.+...... ..-..++..|.|-|+..+ |++++. |-.|++||++..- +..++. +...+.
T Consensus 236 ATGGRDK~vkiWd~t~~~~~~~~t--InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAKPKHT--INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT 313 (839)
T ss_pred eecCCCccEEEEeccCCCccceeE--EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc
Confidence 999999999999998655432211 122467999999998665 555553 7889999998643 333332 334567
Q ss_pred EEEeCCCCCeeEEecCCCcc
Q 020461 237 AVTMSPLLDHVVLGGGQDAS 256 (326)
Q Consensus 237 ~~~~s~~~~~~~~~~~~~~~ 256 (326)
.++|......++.+.+.|+.
T Consensus 314 ~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 314 GIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred ceeccCCCceeeEeecCccH
Confidence 78887655566666665554
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=7.9e-20 Score=148.74 Aligned_cols=229 Identities=19% Similarity=0.291 Sum_probs=165.7
Q ss_pred CCEEEeecCCCCeEEEecCCCCe---------------------eeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEE
Q 020461 22 GDLLFSCAKDHTPTVWFADNGER---------------------LGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLW 79 (326)
Q Consensus 22 ~~~l~s~~~d~~v~iw~~~~~~~---------------------~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~w 79 (326)
|+++|.|.-|..|.|||+.=... -....+|+.+|..++|+..- +.|+|||.|.||++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 78999999999999998752111 01124799999999987653 579999999999999
Q ss_pred EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-
Q 020461 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN- 158 (326)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 158 (326)
|+.++++..++ ..|...|.++.|+|..
T Consensus 272 D~~~g~p~~s~----------------------------------------------------~~~~k~Vq~l~wh~~~p 299 (463)
T KOG0270|consen 272 DVDTGKPKSSI----------------------------------------------------THHGKKVQTLEWHPYEP 299 (463)
T ss_pred EcCCCCcceeh----------------------------------------------------hhcCCceeEEEecCCCc
Confidence 99988764332 3456778888999875
Q ss_pred cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCCc-ceEEEEe-eccce
Q 020461 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTL-ELIKTYV-TERPV 235 (326)
Q Consensus 159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~~ 235 (326)
.+|++|+.|++|.+.|.+....... .-...+.|-.++|.+... .+++++.||+++-+|+|+. +++.++. +...|
T Consensus 300 ~~LLsGs~D~~V~l~D~R~~~~s~~---~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~I 376 (463)
T KOG0270|consen 300 SVLLSGSYDGTVALKDCRDPSNSGK---EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEI 376 (463)
T ss_pred eEEEeccccceEEeeeccCccccCc---eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCc
Confidence 5789999999999999885222111 112346788899988644 5778889999999999975 7888775 66789
Q ss_pred EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc--ceeeeccccccCcceeEEEECCCCce-EEeecCCCcE
Q 020461 236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI--LQEEIGGVKGHFGPINALAFNPDGKS-FSSGGEDGYV 312 (326)
Q Consensus 236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~v~~s~d~~~-lat~s~Dg~i 312 (326)
.++++++.-..++++++.+.. +++|+.. ....+..-.-.-+...|+++.|+-.+ +|.|+..+.+
T Consensus 377 Sgl~~n~~~p~~l~t~s~d~~-------------Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~ 443 (463)
T KOG0270|consen 377 SGLSVNIQTPGLLSTASTDKV-------------VKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVL 443 (463)
T ss_pred ceEEecCCCCcceeeccccce-------------EEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceE
Confidence 999999988888777666542 2233221 12112111112245678888988764 8999999999
Q ss_pred EEeecC
Q 020461 313 RLHHFD 318 (326)
Q Consensus 313 ~l~~~~ 318 (326)
+||++-
T Consensus 444 ~vwd~~ 449 (463)
T KOG0270|consen 444 RVWDIF 449 (463)
T ss_pred EEeecc
Confidence 999864
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2e-19 Score=140.04 Aligned_cols=215 Identities=18% Similarity=0.339 Sum_probs=143.5
Q ss_pred cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeec
Q 020461 49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA 128 (326)
Q Consensus 49 ~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (326)
.+|..-|.++.|.+.|+++++|+.|++|++||.+.+....
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W---------------------------------------- 49 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW---------------------------------------- 49 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce----------------------------------------
Confidence 4688899999999999999999999999999975432211
Q ss_pred cCCCCCCCceEEEeccCccceeEEEEe-c-CCcEEEEeeCCCcEEEEECCCCc------cccccccccCcceeeEEEEEc
Q 020461 129 RDPADQGGESVLILKGPQGRINRAVWG-P-LNRTIISAGEDAIVRIWDTETGK------LLKESDKETGHKKTITSLAKA 200 (326)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~~~~l~s~~~d~~i~~wd~~~~~------~~~~~~~~~~h~~~v~~v~~s 200 (326)
......+.|.+.|..+.|- | .|+.+++++.|+++.||.-.... .-.........+..|+.+.|.
T Consensus 50 --------~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~Fa 121 (361)
T KOG2445|consen 50 --------SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFA 121 (361)
T ss_pred --------EEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEec
Confidence 1223456788888888883 3 57899999999999999752110 111112234557789999999
Q ss_pred CC--CCeEEEEeCCCeEEEeecCCcceEE------EEe--------eccceEEEEeCCCC--CeeEEecCCC-cceeEee
Q 020461 201 AD--GSHFLTGSLDKSAKLWDARTLELIK------TYV--------TERPVNAVTMSPLL--DHVVLGGGQD-ASAVTTT 261 (326)
Q Consensus 201 ~~--~~~l~s~s~dg~i~iwd~~~~~~~~------~~~--------~~~~~~~~~~s~~~--~~~~~~~~~~-~~~~~~~ 261 (326)
|. |-.||+++.||++|||+.-..-.+. ++. ...+..|+.|+|.- ...++.|..+ .-
T Consensus 122 P~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~----- 196 (361)
T KOG2445|consen 122 PKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAP----- 196 (361)
T ss_pred chhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCc-----
Confidence 85 7789999999999999754322222 221 22356678887542 2233333322 10
Q ss_pred cccCceeeeEeecccc--eeeeccccccCcceeEEEECCC----CceEEeecCCCcEEEeecCC
Q 020461 262 DHRAGKFEAKFFDKIL--QEEIGGVKGHFGPINALAFNPD----GKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 262 d~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~v~~s~d----~~~lat~s~Dg~i~l~~~~~ 319 (326)
..++..++-++... -..+..+.+|..+|++++|.|. -.+||+++.|| |+||++..
T Consensus 197 --~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 197 --HLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred --cccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 01111122222211 2335567799999999999995 34699999999 99999874
No 152
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=4.1e-18 Score=148.77 Aligned_cols=292 Identities=15% Similarity=0.229 Sum_probs=206.7
Q ss_pred eeeecCCceeEEEEccC--CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 5 LMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~--~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
.++...+.|+++. +|+ -+-++.|+..|.+.|||+.+++.+++++++...|+++.=+|--..++.|..+|+|.++|++
T Consensus 154 ~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK 232 (910)
T KOG1539|consen 154 FLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK 232 (910)
T ss_pred eeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcc
Confidence 3444445577664 665 4568889999999999999999999999999999999999988899999999999999999
Q ss_pred CCcEEEEEecC-CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe-ccCccceeEEEEecCCcE
Q 020461 83 TGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRT 160 (326)
Q Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 160 (326)
.++.+..|+.+ +++..+.|..++.-..+.+.+. +.+.+|++... ..+..+ ..|.+.|+...|-|..+.
T Consensus 233 ~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~----G~m~~wDLe~k------kl~~v~~nah~~sv~~~~fl~~epV 302 (910)
T KOG1539|consen 233 FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSN----GDMAFWDLEKK------KLINVTRNAHYGSVTGATFLPGEPV 302 (910)
T ss_pred cCcEEEEEEccccceeEEEeccCCCeeEEeccCC----ceEEEEEcCCC------eeeeeeeccccCCcccceecCCCce
Confidence 99999999986 8899999986544333333321 22334544321 233333 367788999999999999
Q ss_pred EEEeeCCCcEEEEECCCCcc-ccccccccCcceeeEEEEEc-CCCCeEEEEeCCCeEEEee-------------------
Q 020461 161 IISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKA-ADGSHFLTGSLDKSAKLWD------------------- 219 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~h~~~v~~v~~s-~~~~~l~s~s~dg~i~iwd------------------- 219 (326)
+++++.|+.+++|=..++.- .+.+....||..+..++.+. .+|..+.+++.|++++.++
T Consensus 303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~ 382 (910)
T KOG1539|consen 303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA 382 (910)
T ss_pred EeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence 99999999999885443221 12233345788888888876 5677777777777555443
Q ss_pred ----------------------------------------------cCCcce-EEEEeec------cceEEEEeCCCCCe
Q 020461 220 ----------------------------------------------ARTLEL-IKTYVTE------RPVNAVTMSPLLDH 246 (326)
Q Consensus 220 ----------------------------------------------~~~~~~-~~~~~~~------~~~~~~~~s~~~~~ 246 (326)
+++... ...+.+. ..+.++++++.|+.
T Consensus 383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF 462 (910)
T KOG1539|consen 383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNF 462 (910)
T ss_pred ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCce
Confidence 332221 1111111 24567888888888
Q ss_pred eEEecCCCcceeEeecccCceeeeEeecccceeeeccc---cccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV---KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 247 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
.+++.+.+. +..|+-+.+...+.+ ..|.++|+.++...-++.++|++.+|-+++|+|-..-
T Consensus 463 ~~IG~S~G~--------------Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 463 VFIGYSKGT--------------IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred EEEeccCCe--------------EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 777654432 233333333333333 5799999999998888999999999999999987654
No 153
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=9.5e-20 Score=146.32 Aligned_cols=214 Identities=22% Similarity=0.298 Sum_probs=153.1
Q ss_pred eccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461 47 TYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125 (326)
Q Consensus 47 ~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
.+.||+++|..++|+| +.+.++|||.|.+|++|.+..+.....
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------------------------------ 119 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------------------------------ 119 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------------------------------
Confidence 4679999999999999 456899999999999999865432110
Q ss_pred eeccCCCCCCCceEEEeccCccceeEEEEecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC
Q 020461 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS 204 (326)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~ 204 (326)
-.+++..+.||+..|..+.|+|.- +.|+++|.|.+|.+|+..+++.+-++ .|...|.++.|+.||+
T Consensus 120 ---------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l----~hpd~i~S~sfn~dGs 186 (472)
T KOG0303|consen 120 ---------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL----DHPDMVYSMSFNRDGS 186 (472)
T ss_pred ---------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec----CCCCeEEEEEeccCCc
Confidence 114677889999999999999975 57889999999999999999876654 3999999999999999
Q ss_pred eEEEEeCCCeEEEeecCCcceEEEEe-ecc-ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceee--
Q 020461 205 HFLTGSLDKSAKLWDARTLELIKTYV-TER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE-- 280 (326)
Q Consensus 205 ~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-- 280 (326)
+|+|.+.|..||+||.++++.+..-. ++. ...-+.|-.++. ++++|-... ..-.+-+|+...-++
T Consensus 187 ~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~----------seRq~aLwdp~nl~eP~ 255 (472)
T KOG0303|consen 187 LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRM----------SERQIALWDPNNLEEPI 255 (472)
T ss_pred eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccc----------cccceeccCcccccCcc
Confidence 99999999999999999999988863 221 222333444455 444332211 111234454322111
Q ss_pred -eccccccCcceeEEEECCCCceEEeec-CCCcEEEeecCCCc
Q 020461 281 -IGGVKGHFGPINALAFNPDGKSFSSGG-EDGYVRLHHFDPDY 321 (326)
Q Consensus 281 -~~~~~~h~~~v~~v~~s~d~~~lat~s-~Dg~i~l~~~~~~~ 321 (326)
+..+. .+..|.-=-|.||.+++.-++ -|+.||-|.+.++-
T Consensus 256 ~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 256 ALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 11121 223454445678888875554 59999999887663
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=8.5e-20 Score=143.33 Aligned_cols=248 Identities=17% Similarity=0.227 Sum_probs=173.3
Q ss_pred cCCceeEEEEccC----CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccC
Q 020461 9 HERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET 83 (326)
Q Consensus 9 h~~~i~~~~~s~~----~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~ 83 (326)
|+..-...+|+-+ ..+||.++.-|.|||.|..++++...+.+|.+.|+.+.|+|+. +++++||.|.+||+|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 5556667777754 3489999999999999999999999999999999999999965 6899999999999999999
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
+.++..+.. ..||...|.++.|++++.+|++
T Consensus 168 ~~Cv~VfGG-------------------------------------------------~egHrdeVLSvD~~~~gd~i~S 198 (385)
T KOG1034|consen 168 DVCVAVFGG-------------------------------------------------VEGHRDEVLSVDFSLDGDRIAS 198 (385)
T ss_pred CeEEEEecc-------------------------------------------------cccccCcEEEEEEcCCCCeeec
Confidence 887655421 2578888999999999999999
Q ss_pred eeCCCcEEEEECCCCccccccc-------------------------cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEe
Q 020461 164 AGEDAIVRIWDTETGKLLKESD-------------------------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~-------------------------~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iw 218 (326)
+|.|..|++|+++..+....+. ...-|+..|-|+.|-. .++++=|.++.|..|
T Consensus 199 cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSkscenaI~~w 276 (385)
T KOG1034|consen 199 CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKSCENAIVCW 276 (385)
T ss_pred cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecccCceEEEE
Confidence 9999999999998432211110 1123666677777654 689999999999999
Q ss_pred ec-CCcceEEEE-------------e-eccceEEEE--eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeee
Q 020461 219 DA-RTLELIKTY-------------V-TERPVNAVT--MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEI 281 (326)
Q Consensus 219 d~-~~~~~~~~~-------------~-~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (326)
.. +-.+.+... . ....+..+- |.|.++.++++.-.+. +..+|.+..... ......
T Consensus 277 ~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~--v~vwdL~~~ep~------~~ttl~ 348 (385)
T KOG1034|consen 277 KPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGK--VYVWDLDNNEPP------KCTTLT 348 (385)
T ss_pred ecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCc--EEEEECCCCCCc------cCceEE
Confidence 87 222222211 1 112233333 4555666665543332 223332221100 000111
Q ss_pred ccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 282 GGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 282 ~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
+ .--...|...+||.||..|+...+|++|.=|+.
T Consensus 349 ~--s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 349 H--SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred e--ccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 1 112357999999999999999999999877764
No 155
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=2.7e-19 Score=143.71 Aligned_cols=197 Identities=24% Similarity=0.337 Sum_probs=150.8
Q ss_pred eeeeecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCC-------CeeeeccCcccceEEEEEcCC-CCeEEEEeCCC
Q 020461 4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQ 74 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~ 74 (326)
.++.||.++|..++|+| +.+.|||||.|.+|.||.+..+ +.+..+.+|+..|.-++|+|- .+.|+|+|.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 46789999999999998 5678999999999999988655 335678899999999999995 46899999999
Q ss_pred cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (326)
Q Consensus 75 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (326)
+|.+||+.+++.+..+ . |...|.++.|
T Consensus 155 ~v~iWnv~tgeali~l----------------------------------------------------~-hpd~i~S~sf 181 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITL----------------------------------------------------D-HPDMVYSMSF 181 (472)
T ss_pred eEEEEeccCCceeeec----------------------------------------------------C-CCCeEEEEEe
Confidence 9999999988754321 2 6677889999
Q ss_pred ecCCcEEEEeeCCCcEEEEECCCCccccccccccCcce-eeEEEEEcCCCCeEEEEe---CCCeEEEeecCCcce---EE
Q 020461 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK-TITSLAKAADGSHFLTGS---LDKSAKLWDARTLEL---IK 227 (326)
Q Consensus 155 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~-~v~~v~~s~~~~~l~s~s---~dg~i~iwd~~~~~~---~~ 227 (326)
+-+|.+|++.+.|..|+|||.++++.+.+-. +|.+ ...-+.|-.+|..+-||- ++..+-+||..+.+. ..
T Consensus 182 n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~---~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~ 258 (472)
T KOG0303|consen 182 NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV---AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ 258 (472)
T ss_pred ccCCceeeeecccceeEEEcCCCCcEeeecc---cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeE
Confidence 9999999999999999999999998887653 3432 234456677887444443 477899999776433 22
Q ss_pred EEeeccceEEEEeCCCCCeeEEecCCCcc
Q 020461 228 TYVTERPVNAVTMSPLLDHVVLGGGQDAS 256 (326)
Q Consensus 228 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 256 (326)
++....-+-.--+.++.+.++++|..|+.
T Consensus 259 elDtSnGvl~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 259 ELDTSNGVLLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred EeccCCceEEeeecCCCCEEEEEecCCcc
Confidence 23223334444467888888888766654
No 156
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=9.3e-20 Score=148.33 Aligned_cols=210 Identities=19% Similarity=0.274 Sum_probs=151.2
Q ss_pred eecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEEccCC
Q 020461 7 KGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETG 84 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~ 84 (326)
.+|.+.|.+++|+.. .+.|||||.|.+|++||+.++++..++..|.+.|.+++|+|. ..+|++|+.|++|++.|.+..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 368999999999876 568999999999999999999999999999999999999985 578999999999999999842
Q ss_pred -cEEEEEecCCCcceeeeecCCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EE
Q 020461 85 -AQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TI 161 (326)
Q Consensus 85 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l 161 (326)
..-..+++.+.+-.+.|.+... .++++++. +..+..++. ..++++..++.|.++|..+.+++.-+ .+
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd-----G~v~~~D~R-----~~~~~vwt~~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD-----GTVYYFDIR-----NPGKPVWTLKAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCC-----ceEEeeecC-----CCCCceeEEEeccCCcceEEecCCCCcce
Confidence 2334456666666666665332 22222221 112222221 23478999999999999999998754 67
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCCcceEE
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIK 227 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~ 227 (326)
+|++.|++|++|++..-..-....+ .-.-+...|.++.|+-. .++.|+..+.+++||+.+...++
T Consensus 390 ~t~s~d~~Vklw~~~~~~~~~v~~~-~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDVDSPKSVKEH-SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred eeccccceEEEEeecCCCCcccccc-cccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 8999999999999853222111110 01123355666666643 57778888889999998766543
No 157
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.4e-18 Score=140.92 Aligned_cols=246 Identities=15% Similarity=0.247 Sum_probs=173.7
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEEEccC--CcEEEEEec-CCCcceeeeecCCe-EEEEE-cCccceeceeeeeee
Q 020461 52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVET--GAQLFTFNF-DSPARSVDFAVGDK-LAVIT-TDPFMELNSAIHVKR 126 (326)
Q Consensus 52 ~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~ 126 (326)
.+.|.++.|+|....|++|+.|+++++|-++. .+.++.+.+ ..|+.+..|.+.+. .++.+ ..+++.. ++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys------yD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS------YD 286 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEE------ee
Confidence 45799999999999999999999999998754 444555554 46778888887655 33333 3333322 11
Q ss_pred eccCCCCCCCceEEEeccCc-cceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe
Q 020461 127 IARDPADQGGESVLILKGPQ-GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH 205 (326)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 205 (326)
+.. ..-..+..+.++. ..+.....+|++++|+..|..|.|.+....+++.+..+. -.+.|..++|+.|+..
T Consensus 287 le~----ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K----ieG~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 287 LET----AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK----IEGVVSDFTFSSDSKE 358 (514)
T ss_pred ccc----cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee----eccEEeeEEEecCCcE
Confidence 110 0011111222332 345667789999999999999999999999998887664 3578999999999999
Q ss_pred EEEEeCCCeEEEeecCCcceEEEEeeccce--EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461 206 FLTGSLDKSAKLWDARTLELIKTYVTERPV--NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 283 (326)
Q Consensus 206 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (326)
|++.+.+|.|.+||+++..+++.+..+..+ ..+|.+++++.+++ |.+..++.++|...- +....++++..
T Consensus 359 l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~--GS~~GiVNIYd~~s~------~~s~~PkPik~ 430 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT--GSDSGIVNIYDGNSC------FASTNPKPIKT 430 (514)
T ss_pred EEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEe--ccCcceEEEeccchh------hccCCCCchhh
Confidence 999999999999999999999999876654 45666777775544 344445555542221 11123444555
Q ss_pred ccccCcceeEEEECCCCceEEeecC--CCcEEEeecCC
Q 020461 284 VKGHFGPINALAFNPDGKSFSSGGE--DGYVRLHHFDP 319 (326)
Q Consensus 284 ~~~h~~~v~~v~~s~d~~~lat~s~--Dg~i~l~~~~~ 319 (326)
+..-...|+++.|+||+..||.||. +..+||-+++.
T Consensus 431 ~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 431 VDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred hhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 5555668999999999999988876 78889877764
No 158
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4.9e-19 Score=143.47 Aligned_cols=200 Identities=27% Similarity=0.325 Sum_probs=139.0
Q ss_pred eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecC
Q 020461 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD 93 (326)
Q Consensus 14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 93 (326)
.+++|+.+|..|++++.||++|||+..+...+..+.+|.+.|..++|+||+++|++-+.| ..+||+.+++..+......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 689999999999999999999999999988888999999999999999999999999999 8999999988543322110
Q ss_pred CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-----cEEEEeeCCC
Q 020461 94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-----RTIISAGEDA 168 (326)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~s~~~d~ 168 (326)
.. +-....+.|+.++ ..++.-..-+
T Consensus 227 ~k--------------------------------------------------~~~~~~cRF~~d~~~~~l~laa~~~~~~ 256 (398)
T KOG0771|consen 227 SK--------------------------------------------------DEMFSSCRFSVDNAQETLRLAASQFPGG 256 (398)
T ss_pred cc--------------------------------------------------chhhhhceecccCCCceEEEEEecCCCC
Confidence 00 0000011111111 1112222233
Q ss_pred cEEEEECCCCc---cccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCC
Q 020461 169 IVRIWDTETGK---LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 245 (326)
Q Consensus 169 ~i~~wd~~~~~---~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~ 245 (326)
.|+.||+...+ ..+.... ......|.+++.+++|++++.|+.||.|-|++..+.++++-.
T Consensus 257 ~v~~~~~~~w~~~~~l~~~~~-~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v---------------- 319 (398)
T KOG0771|consen 257 GVRLCDISLWSGSNFLRLRKK-IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV---------------- 319 (398)
T ss_pred ceeEEEeeeeccccccchhhh-hhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee----------------
Confidence 34444432111 1111111 112356999999999999999999999999997655443221
Q ss_pred eeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
.+.|..-|+.+.|+||.+++++-|.|.+++|..+.-
T Consensus 320 --------------------------------------k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 320 --------------------------------------KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred --------------------------------------hhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 124667789999999999999999999888876654
No 159
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=2.5e-18 Score=133.00 Aligned_cols=266 Identities=18% Similarity=0.290 Sum_probs=179.3
Q ss_pred eeeeecCCceeEEEEccCCC-EEEeecCC-------CCeEEEecCCC---------Ceeeecc-CcccceEEEEEcCCCC
Q 020461 4 ILMKGHERPLTYLKYNKDGD-LLFSCAKD-------HTPTVWFADNG---------ERLGTYR-GHNGAVWCCDVSRDSM 65 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~-~l~s~~~d-------~~v~iw~~~~~---------~~~~~~~-~h~~~V~~~~~~~~~~ 65 (326)
.+|..|.+.|..++-+|-.+ +|+++-++ ..+-||.+... +++..+. ++.+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 35677888999999999655 55555442 34568977543 3344454 5677999999999998
Q ss_pred eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC
Q 020461 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145 (326)
Q Consensus 66 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (326)
.+++-. |..|.+|++..+..+... ... . .+ .++
T Consensus 137 klasm~-dn~i~l~~l~ess~~vae-v~s-----------------s---------------------~s-------~e~ 169 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAE-VLS-----------------S---------------------ES-------AEM 169 (370)
T ss_pred eeEEec-cCceEEEEcccCcchhee-ecc-----------------c---------------------cc-------ccc
Confidence 887665 788999999876542100 000 0 00 001
Q ss_pred ccceeEEEEec--CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCC
Q 020461 146 QGRINRAVWGP--LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDART 222 (326)
Q Consensus 146 ~~~i~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~ 222 (326)
....++-.|+| ++..+++. .|+++..||.++.+....+. .+|...|..++|.|+.. +|+||+.||.|+|||.|.
T Consensus 170 ~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~--dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~ 246 (370)
T KOG1007|consen 170 RHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIE--DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK 246 (370)
T ss_pred cceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchh--hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC
Confidence 22234456777 45566654 58899999999877655544 57889999999999865 588999999999999986
Q ss_pred -cceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCc-eeeeEeec---------------ccceeeeccc
Q 020461 223 -LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG-KFEAKFFD---------------KILQEEIGGV 284 (326)
Q Consensus 223 -~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~---------------~~~~~~~~~~ 284 (326)
..+++++. +...+.++-|+|..+.++++++.|...+-..-.... ...+.+-+ ....-.+..+
T Consensus 247 tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty 326 (370)
T KOG1007|consen 247 TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY 326 (370)
T ss_pred CCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence 45566654 446799999999999999999888754432111110 00111111 1111124456
Q ss_pred cccCcceeEEEECCCC-ceEEeecCCCcEEEeecCC
Q 020461 285 KGHFGPINALAFNPDG-KSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 285 ~~h~~~v~~v~~s~d~-~~lat~s~Dg~i~l~~~~~ 319 (326)
..|..-|.+++||.-. =.||+=|.||.+.|=++.+
T Consensus 327 dehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 327 DEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 7899999999998644 4689999999999877654
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=1.8e-18 Score=146.82 Aligned_cols=244 Identities=17% Similarity=0.195 Sum_probs=164.6
Q ss_pred EEEEccC---CCEEEeecCCCCeEEEecCCCCe------eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 15 YLKYNKD---GDLLFSCAKDHTPTVWFADNGER------LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 15 ~~~~s~~---~~~l~s~~~d~~v~iw~~~~~~~------~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
...|++- .++|+.+..||.|.++|...... +..+.+|.++|..+.|.|....|++++.|.++++||+++++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 3566643 45788999999999999764422 35667899999999999955689999999999999998776
Q ss_pred EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEe
Q 020461 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISA 164 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~ 164 (326)
++. .....||.+.+.+++|.|+++ .|++|
T Consensus 134 l~G--------------------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tG 163 (720)
T KOG0321|consen 134 LVG--------------------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTG 163 (720)
T ss_pred eec--------------------------------------------------ceeecccccccchhhhccCCCcceeec
Confidence 431 112457888999999999875 78899
Q ss_pred eCCCcEEEEECCCCc--cccc----------------------cccccCcceeeEE---EEEcCCCCeEEEEeC-CCeEE
Q 020461 165 GEDAIVRIWDTETGK--LLKE----------------------SDKETGHKKTITS---LAKAADGSHFLTGSL-DKSAK 216 (326)
Q Consensus 165 ~~d~~i~~wd~~~~~--~~~~----------------------~~~~~~h~~~v~~---v~~s~~~~~l~s~s~-dg~i~ 216 (326)
+.||.|.|||++-.. .... ...-..|...+.+ +.+..|...||+++. |+.|+
T Consensus 164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iK 243 (720)
T KOG0321|consen 164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIK 243 (720)
T ss_pred cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceE
Confidence 999999999986322 0000 0001123444555 556678889999988 99999
Q ss_pred EeecCCcceEEEEee--------c----cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc--ceeeec
Q 020461 217 LWDARTLELIKTYVT--------E----RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI--LQEEIG 282 (326)
Q Consensus 217 iwd~~~~~~~~~~~~--------~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~ 282 (326)
+||++.......... . .-+.++.....|..+++.-.++ .|++|+.. ...++.
T Consensus 244 VWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~--------------sIy~ynm~s~s~sP~~ 309 (720)
T KOG0321|consen 244 VWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN--------------SIYFYNMRSLSISPVA 309 (720)
T ss_pred EEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC--------------cEEEEeccccCcCchh
Confidence 999997654333211 0 1234555556666666543322 23333322 122333
Q ss_pred cccccCc--ceeEEEECCCCceEEeecCCCcEEEeecCCCce
Q 020461 283 GVKGHFG--PINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF 322 (326)
Q Consensus 283 ~~~~h~~--~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~ 322 (326)
.+.+|.. .-..-..+||+.++++|+.|....+|.+..-+.
T Consensus 310 ~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 310 EFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred hccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 3444422 112344589999999999999999999876443
No 161
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=6.4e-18 Score=136.03 Aligned_cols=301 Identities=14% Similarity=0.186 Sum_probs=193.1
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC------CCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------GERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAK 77 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~------~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~ 77 (326)
-+++|.+.|.++.||.++++|++|+.|..+++|+... .+.+..... |...|.|++|....+++++|+.+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 3678999999999999999999999999999998753 344443333 446899999999889999999999999
Q ss_pred EEEccCCcEEEEEecCC---CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461 78 LWNVETGAQLFTFNFDS---PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (326)
Q Consensus 78 ~wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (326)
+.|+++.+.+..+.... .+-.++.+|.+.++++.+.. ....+++....+. .+.++ .+..-...-..+.|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~-----~~V~~~D~Rd~~~--~~~~~-~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA-----KLVSFIDNRDRQN--PISLV-LPANSGKNFYTAEF 202 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecC-----ceEEEEeccCCCC--CCcee-eecCCCccceeeee
Confidence 99999999888876543 45556666655555444332 1222233222111 11122 22222344567889
Q ss_pred ecCCc-EEEEeeCCCcEEEEECCCCcc-ccccc---cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc-eEEE
Q 020461 155 GPLNR-TIISAGEDAIVRIWDTETGKL-LKESD---KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-LIKT 228 (326)
Q Consensus 155 ~~~~~-~l~s~~~d~~i~~wd~~~~~~-~~~~~---~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~-~~~~ 228 (326)
+|..+ +|++.+..+-+.+||++.... +.... ..........++.|+|+|..|++--....=.+||+.++. .+.+
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k 282 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK 282 (609)
T ss_pred cCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence 99764 778999999999999975432 11111 111112345788999999999887766666778887743 3444
Q ss_pred Eeecc-------ceEEEEeCCCCCeeEEecCCCcceeEee----cccCceeeeEeecc-------cceeeeccccccCcc
Q 020461 229 YVTER-------PVNAVTMSPLLDHVVLGGGQDASAVTTT----DHRAGKFEAKFFDK-------ILQEEIGGVKGHFGP 290 (326)
Q Consensus 229 ~~~~~-------~~~~~~~s~~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~-------~~~~~~~~~~~h~~~ 290 (326)
+.+.. .+.+++|..+- -+++|+ |...+.+| +...+.+...--+. ....++..++||.+-
T Consensus 283 ~D~N~~GY~N~~T~KS~~F~~D~--~v~tGS-D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv 359 (609)
T KOG4227|consen 283 SDHNPNGYCNIKTIKSMTFIDDY--TVATGS-DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSV 359 (609)
T ss_pred ccCCCCcceeeeeeeeeeeecce--eeeccC-cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccc
Confidence 43221 23445554432 233333 32222222 11111110000000 012345678999999
Q ss_pred eeEEEECCCCceEEeecCCCcEEEee
Q 020461 291 INALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 291 v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
++.|.|+|...+|++.+....++||+
T Consensus 360 ~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 360 PNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ccceeecCCcceEeccchhhheeccc
Confidence 99999999999999999999999986
No 162
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=4.4e-19 Score=148.53 Aligned_cols=211 Identities=27% Similarity=0.408 Sum_probs=148.7
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC------C----CeeeeccCcccceEEEEEcCCCCeEEEEeCC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------G----ERLGTYRGHNGAVWCCDVSRDSMTLITGSAD 73 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~------~----~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d 73 (326)
..+++|+++|.|++++++++++++|+-||+|+.|++.. . .....+.||.++||.+++|+....|++++.|
T Consensus 338 ~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~D 417 (577)
T KOG0642|consen 338 LTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSD 417 (577)
T ss_pred EEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCC
Confidence 67999999999999999999999999999999996531 1 2345678999999999999988899999999
Q ss_pred CcEEEEEccCCcEEEEEecC---CCcceeeeecCC-eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec-----c
Q 020461 74 QTAKLWNVETGAQLFTFNFD---SPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-----G 144 (326)
Q Consensus 74 ~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 144 (326)
||+++|+...... +.+.-. .-..++++.... .+.+++. ......+ .+.. .......+. +
T Consensus 418 gTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~--------~~~~~~~-~~~e--v~s~~~~~~s~~~~~ 485 (577)
T KOG0642|consen 418 GTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASF--------RFGYTSI-DDME--VVSDLLIFESSASPG 485 (577)
T ss_pred ceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhc--------ccccccc-hhhh--hhhheeeccccCCCc
Confidence 9999999876554 222110 111122221111 0000000 0000000 0000 000111111 0
Q ss_pred --CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461 145 --PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 145 --~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (326)
....++.+.++|.....+++..|+.|+++|..+++.+... ..|...++++++.|+|.+|++++.|+.+++|.+..
T Consensus 486 ~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~---~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 486 PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM---VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ccccCccceEEecCCCCeeEecccCCceecccccccccchhe---eeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 1135778889999999999999999999999999877654 46889999999999999999999999999999987
Q ss_pred cceEEEE
Q 020461 223 LELIKTY 229 (326)
Q Consensus 223 ~~~~~~~ 229 (326)
..++...
T Consensus 563 k~~~~es 569 (577)
T KOG0642|consen 563 KTCVLES 569 (577)
T ss_pred hheeecc
Confidence 7776554
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=9.7e-19 Score=137.46 Aligned_cols=167 Identities=23% Similarity=0.396 Sum_probs=131.0
Q ss_pred eeeeecCCceeEEEEcc----C-CCEEEeecCCCCeEEEecCCCCe---eeec--cCcccceEEEEEcCC----CCeEEE
Q 020461 4 ILMKGHERPLTYLKYNK----D-GDLLFSCAKDHTPTVWFADNGER---LGTY--RGHNGAVWCCDVSRD----SMTLIT 69 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~----~-~~~l~s~~~d~~v~iw~~~~~~~---~~~~--~~h~~~V~~~~~~~~----~~~l~s 69 (326)
.++++|..+|..++|.+ + -+.+++.+. ..+.||+...... ++.. ..|...-..++|+-+ ..+++.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 46788999999999994 2 345555555 4778887654432 2222 236666777888654 347888
Q ss_pred EeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccce
Q 020461 70 GSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI 149 (326)
Q Consensus 70 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 149 (326)
||.-|.|++.|+.+++.. ..+.+|...|
T Consensus 111 ~G~~GvIrVid~~~~~~~----------------------------------------------------~~~~ghG~sI 138 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCS----------------------------------------------------KNYRGHGGSI 138 (385)
T ss_pred ecceeEEEEEecchhhhc----------------------------------------------------cceeccCccc
Confidence 889999999998765432 2245677788
Q ss_pred eEEEEecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc
Q 020461 150 NRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (326)
Q Consensus 150 ~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~ 223 (326)
+.+.++|+. +++++++.|.+||+|++.+..++..+-...+|...|.+++|+++|.++++++.|.+|++|++...
T Consensus 139 Neik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 139 NEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred hhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 888899976 58889999999999999999999888888899999999999999999999999999999999843
No 164
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=9.1e-20 Score=159.01 Aligned_cols=248 Identities=21% Similarity=0.400 Sum_probs=174.8
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 84 (326)
-|.||..+|+|+.|...|.++++|+.|..|+||..+++.+...++||.+.|..++.+.+...++++|.|..|++|-+.++
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 46899999999999999999999999999999999999999999999999999999888888999999999999998765
Q ss_pred cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (326)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 164 (326)
. ++.++.||.+.|++++|+|. .+.
T Consensus 265 ~----------------------------------------------------pvsvLrghtgavtaiafsP~----~ss 288 (1113)
T KOG0644|consen 265 A----------------------------------------------------PVSVLRGHTGAVTAIAFSPR----ASS 288 (1113)
T ss_pred c----------------------------------------------------hHHHHhccccceeeeccCcc----ccC
Confidence 3 33456789999999999995 378
Q ss_pred eCCCcEEEEECCCCcccccccccc-CcceeeEEEEEcCCCC-------------------------------------eE
Q 020461 165 GEDAIVRIWDTETGKLLKESDKET-GHKKTITSLAKAADGS-------------------------------------HF 206 (326)
Q Consensus 165 ~~d~~i~~wd~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~~-------------------------------------~l 206 (326)
+.||++++||.+-......-.+.. .-...+.++.+-.++. +.
T Consensus 289 s~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~ 368 (1113)
T KOG0644|consen 289 SDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIV 368 (1113)
T ss_pred CCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccc
Confidence 999999999977111110000000 0001122222222222 23
Q ss_pred EEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccc
Q 020461 207 LTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK 285 (326)
Q Consensus 207 ~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 285 (326)
+++-.+-.++.|++.++.+++... +...+..+.++|....++.++|.|+..+ +||...+... +.| ..
T Consensus 369 ~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~-iwdi~eg~pi-k~y----------~~ 436 (1113)
T KOG0644|consen 369 VTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTI-IWDIWEGIPI-KHY----------FI 436 (1113)
T ss_pred eeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceE-eeecccCCcc-eee----------ec
Confidence 333344456677777776665543 3346777888888888888777766433 2333222211 111 13
Q ss_pred ccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 286 GHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 286 ~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
+| +.+..-+||+||..++....-|.+.|+.+-..-
T Consensus 437 gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 437 GH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cc-ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 34 467788999999999988888999887765443
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=7.1e-16 Score=134.84 Aligned_cols=289 Identities=31% Similarity=0.493 Sum_probs=198.9
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecC-CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNV 81 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~-d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~ 81 (326)
..+.+|...|..++|+|+++++++++. |+.+++|+..++..+..+.+|...|.+++|+|++. .+++++.|++|++||.
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~ 228 (466)
T COG2319 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228 (466)
T ss_pred EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEEC
Confidence 457789999999999999999998886 99999999999888989999999999999999987 5666699999999998
Q ss_pred cCCcEEE-EEecCCCcceeeeecCCeEEE-EEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461 82 ETGAQLF-TFNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (326)
Q Consensus 82 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (326)
..+.... .+..........+.+.....+ ...+ ..+.++...... .......+|...+.++.|+|++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 229 STGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSD------GTIRLWDLRSSS-----SLLRTLSGHSSSVLSVAFSPDGK 297 (466)
T ss_pred CCCcEEeeecCCCCcceeEeECCCCCEEEEecCC------CcEEEeeecCCC-----cEEEEEecCCccEEEEEECCCCC
Confidence 8766665 343322222114555543332 2222 223333332111 12233367788999999999888
Q ss_pred EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEE-eCCCeEEEeecCCcceEEEEeeccceEEE
Q 020461 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTERPVNAV 238 (326)
Q Consensus 160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 238 (326)
.+++++.|+.+++||..+........ ...|...+..+.+.+++..++.+ ..|+.+++|+...............+..+
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSV 376 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEE
Confidence 88889999999999988766544332 23566678888884333556665 68899999999887733333333337788
Q ss_pred EeCCCCCeeEEe-cCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 239 TMSPLLDHVVLG-GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 239 ~~s~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
.+.+ . ....+ ...+. .+.+|+............+...+....+++++..+++++.++.+++|+.
T Consensus 377 ~~~~-~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 377 SFSP-D-GRVVSSGSTDG-------------TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred EECC-C-CCEEEEecCCC-------------ceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence 8888 5 44443 22221 1233433333222222222267899999999999999999999999988
Q ss_pred CC
Q 020461 318 DP 319 (326)
Q Consensus 318 ~~ 319 (326)
..
T Consensus 442 ~~ 443 (466)
T COG2319 442 KT 443 (466)
T ss_pred cC
Confidence 75
No 166
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=9.6e-18 Score=126.81 Aligned_cols=242 Identities=17% Similarity=0.235 Sum_probs=158.5
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEEecCC---------C-CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADN---------G-ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~---------~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
|.+-+++|.+++|++|+.+|.|-+..++. + ..+-.+++|.++|+.++|+. .+|++|+. |.|+=|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~gd-G~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGGD-GLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeeccC-ceEEEeeeh
Confidence 45567899999999999999999997753 1 23445689999999999983 46666655 999988765
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
+...... ....|+... +..+-...-..|+.+-..|..+-++
T Consensus 90 E~~es~~-------------------------------~K~lwe~~~--------P~~~~~~evPeINam~ldP~enSi~ 130 (325)
T KOG0649|consen 90 EEEESLA-------------------------------TKRLWEVKI--------PMQVDAVEVPEINAMWLDPSENSIL 130 (325)
T ss_pred hhhhhcc-------------------------------chhhhhhcC--------ccccCcccCCccceeEeccCCCcEE
Confidence 4332100 000111100 0000011123578888899888888
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceE------
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN------ 236 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~------ 236 (326)
.++.|+.+.-||+++|+..+++. ||..-+.++..-.....+++|++||++|+||.+++++++.+......+
T Consensus 131 ~AgGD~~~y~~dlE~G~i~r~~r---GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 131 FAGGDGVIYQVDLEDGRIQREYR---GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred EecCCeEEEEEEecCCEEEEEEc---CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 88999999999999998877664 899999999985555679999999999999999999999876432211
Q ss_pred ---EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461 237 ---AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 313 (326)
Q Consensus 237 ---~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~ 313 (326)
..+...+.+.+++++|..- .+|.....+.+.. ..-.++|..+.|- ...+.+++.-..|.
T Consensus 208 g~wigala~~edWlvCGgGp~l---------------slwhLrsse~t~v-fpipa~v~~v~F~--~d~vl~~G~g~~v~ 269 (325)
T KOG0649|consen 208 GKWIGALAVNEDWLVCGGGPKL---------------SLWHLRSSESTCV-FPIPARVHLVDFV--DDCVLIGGEGNHVQ 269 (325)
T ss_pred CceeEEEeccCceEEecCCCce---------------eEEeccCCCceEE-EecccceeEeeee--cceEEEecccccee
Confidence 2344455567777665432 2333222222211 1223456677774 44455556555554
Q ss_pred Eeec
Q 020461 314 LHHF 317 (326)
Q Consensus 314 l~~~ 317 (326)
-|.+
T Consensus 270 ~~~l 273 (325)
T KOG0649|consen 270 SYTL 273 (325)
T ss_pred eeee
Confidence 4443
No 167
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=8.8e-17 Score=137.56 Aligned_cols=306 Identities=16% Similarity=0.232 Sum_probs=199.6
Q ss_pred eeeeecCC-ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 4 ILMKGHER-PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 4 ~~~~~h~~-~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
.++.|+++ .|..++|+ ++.+|+|.+.+|+|.-||+.+++.........++||+++.+|.+..++.|+.||.+...+..
T Consensus 62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~ 140 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG 140 (691)
T ss_pred EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC
Confidence 45566554 68999999 56679999999999999999999999999999999999999999999999999987788887
Q ss_pred CCcEEEEEecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCC--CCceEEEecc-CccceeEEEEec
Q 020461 83 TGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ--GGESVLILKG-PQGRINRAVWGP 156 (326)
Q Consensus 83 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~i~~~~~~~ 156 (326)
.++..+.-.+. +.+.++.|.+...-++.+.. +..+.+|+........ .. .+..+.. ..--|.++.+-
T Consensus 141 p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-----Dg~Iriwd~~~~~t~~~~~~-~~d~l~k~~~~iVWSv~~L- 213 (691)
T KOG2048|consen 141 PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-----DGVIRIWDVKSGQTLHIITM-QLDRLSKREPTIVWSVLFL- 213 (691)
T ss_pred CceEEEEeecccccceEEEEEecCCccEEEeccc-----CceEEEEEcCCCceEEEeee-cccccccCCceEEEEEEEe-
Confidence 77776654443 45666777776663333322 2234444443211100 00 0000111 11123344443
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce--E---EEEee
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--I---KTYVT 231 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~---~~~~~ 231 (326)
....|++|..-|+|++||...++++... ..|.+.|.+++..+++.++++++.|+.|.-+...+... + +.-.+
T Consensus 214 rd~tI~sgDS~G~V~FWd~~~gTLiqS~---~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h 290 (691)
T KOG2048|consen 214 RDSTIASGDSAGTVTFWDSIFGTLIQSH---SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH 290 (691)
T ss_pred ecCcEEEecCCceEEEEcccCcchhhhh---hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC
Confidence 3467999999999999999998877654 35889999999999999999999999999888766532 1 11124
Q ss_pred ccceEEEEeCCCCCeeEEecCCCcceeEe-------ecccCc--------------eeeeEeeccc--------ce----
Q 020461 232 ERPVNAVTMSPLLDHVVLGGGQDASAVTT-------TDHRAG--------------KFEAKFFDKI--------LQ---- 278 (326)
Q Consensus 232 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-------~d~~~~--------------~~~~~~~~~~--------~~---- 278 (326)
...+.+++..++ .+++||.|...... .|.+.. ..-..+|..- ..
T Consensus 291 ~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g 367 (691)
T KOG2048|consen 291 AHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQG 367 (691)
T ss_pred cccceeeeeecc---eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCccccc
Confidence 567888887765 55566666543321 111100 0001112110 00
Q ss_pred -----eeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCceeee
Q 020461 279 -----EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK 325 (326)
Q Consensus 279 -----~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~~~ 325 (326)
..++-...-...|.+-+.||||+.+|-+. =.+.+|+++.++- ++|
T Consensus 368 ~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st-~~~~~iy~L~~~~-~vk 417 (691)
T KOG2048|consen 368 EYNYIHLLKLFTKEKENISCAAISPDGNLIAIST-VSRTKIYRLQPDP-NVK 417 (691)
T ss_pred ccChhhheeeecCCccceeeeccCCCCCEEEEee-ccceEEEEeccCc-cee
Confidence 00110111224789999999999999776 3567888888876 544
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3.9e-19 Score=160.09 Aligned_cols=243 Identities=19% Similarity=0.280 Sum_probs=181.4
Q ss_pred eEEEEccCCCE----EEeecCCCCeEEEecCCC------CeeeeccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEcc
Q 020461 14 TYLKYNKDGDL----LFSCAKDHTPTVWFADNG------ERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVE 82 (326)
Q Consensus 14 ~~~~~s~~~~~----l~s~~~d~~v~iw~~~~~------~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~ 82 (326)
+.++|.+.|.. ||.|..||.|.+|+.... +.+.++..|++.|..++|++... +|++|+.||.|.+||++
T Consensus 68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln 147 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN 147 (1049)
T ss_pred eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence 68899998876 899999999999987541 34667788999999999999654 99999999999999997
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTI 161 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 161 (326)
.-+.-... + -....+.|.+++|+..- ..|
T Consensus 148 n~~tP~~~-------------~-------------------------------------~~~~~~eI~~lsWNrkvqhIL 177 (1049)
T KOG0307|consen 148 KPETPFTP-------------G-------------------------------------SQAPPSEIKCLSWNRKVSHIL 177 (1049)
T ss_pred CcCCCCCC-------------C-------------------------------------CCCCcccceEeccchhhhHHh
Confidence 53321110 0 00123456677777643 477
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCC---eEEEeecCCc-ceEEEE-eeccce
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDK---SAKLWDARTL-ELIKTY-VTERPV 235 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg---~i~iwd~~~~-~~~~~~-~~~~~~ 235 (326)
++++.+|++.|||++..+.+-.+....+ +..+..+.|+|+.. .+++++.|. .|.+||+|.- ..++.+ .+..-+
T Consensus 178 AS~s~sg~~~iWDlr~~~pii~ls~~~~-~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gi 256 (1049)
T KOG0307|consen 178 ASGSPSGRAVIWDLRKKKPIIKLSDTPG-RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGI 256 (1049)
T ss_pred hccCCCCCceeccccCCCcccccccCCC-ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccce
Confidence 8999999999999998766554432211 24477899999754 577777665 5999998853 344444 355678
Q ss_pred EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc-eEEeecCCCcEEE
Q 020461 236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVRL 314 (326)
Q Consensus 236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~l 314 (326)
-++.|.+.+++++++.|.|.. +..|+.++++-+..+..-..++..+.|+|... .+|.++-||.|.|
T Consensus 257 lslsWc~~D~~lllSsgkD~~-------------ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I 323 (1049)
T KOG0307|consen 257 LSLSWCPQDPRLLLSSGKDNR-------------IICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISI 323 (1049)
T ss_pred eeeccCCCCchhhhcccCCCC-------------eeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceee
Confidence 899999999888877777653 34577777777777776678899999999665 7899999999999
Q ss_pred eecCCC
Q 020461 315 HHFDPD 320 (326)
Q Consensus 315 ~~~~~~ 320 (326)
+++...
T Consensus 324 ~sl~~~ 329 (1049)
T KOG0307|consen 324 YSLQGT 329 (1049)
T ss_pred eeeecC
Confidence 887653
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=1.8e-18 Score=142.89 Aligned_cols=238 Identities=18% Similarity=0.239 Sum_probs=172.9
Q ss_pred ceeEEEEccCCC-EEEeecCCCCeEEEecCC--CCe--eeeccCccc-ceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 12 PLTYLKYNKDGD-LLFSCAKDHTPTVWFADN--GER--LGTYRGHNG-AVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 12 ~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~--~~~--~~~~~~h~~-~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
.+..++|+.... ..++.+.|..+++|.-.. ++. +....+... .|.+..+ ..++++||..+.|++||++. +
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~---S~y~~sgG~~~~Vkiwdl~~-k 111 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ---SLYEISGGQSGCVKIWDLRA-K 111 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc---ceeeeccCcCceeeehhhHH-H
Confidence 367888887664 344566899999995322 222 333334322 2444444 47999999999999999873 2
Q ss_pred EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 165 (326)
. ..+.+++|++.|+++.|+-...+|++++
T Consensus 112 l---------------------------------------------------~hr~lkdh~stvt~v~YN~~DeyiAsvs 140 (673)
T KOG4378|consen 112 L---------------------------------------------------IHRFLKDHQSTVTYVDYNNTDEYIASVS 140 (673)
T ss_pred H---------------------------------------------------HhhhccCCcceeEEEEecCCcceeEEec
Confidence 1 1223578889999999999999999999
Q ss_pred CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe-EEEEeCCCeEEEeecCCcceEEEEe--eccceEEEEeCC
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSP 242 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~ 242 (326)
..|.|.|-.+.++....++.. +....|.-+.+++-.+. |.+++.+|.|.+||+....++..+. +..+...++|+|
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~--~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsp 218 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTI--DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSP 218 (673)
T ss_pred cCCcEEEEecccCccccceec--CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecC
Confidence 999999999988766555432 33456778999987554 6688999999999998877776653 456788999999
Q ss_pred CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
....++++.|.|..+ ..+|.+. +.....+ ....+..+++|+++|.+|++|+..|.|..++++..
T Consensus 219 sne~l~vsVG~Dkki-~~yD~~s------------~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 219 SNEALLVSVGYDKKI-NIYDIRS------------QASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred CccceEEEecccceE-EEeeccc------------cccccee-eecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 999999888877542 2334332 2222222 12357899999999999999999999999888764
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=1.7e-15 Score=132.47 Aligned_cols=290 Identities=31% Similarity=0.549 Sum_probs=203.7
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC-eeeeccCccc-ceEEEEE-cCCCC-eEEEEeC-CCcEEEE
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNG-AVWCCDV-SRDSM-TLITGSA-DQTAKLW 79 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-~~~~~~~h~~-~V~~~~~-~~~~~-~l~s~~~-d~~i~~w 79 (326)
.+.+|...+..+.|.+++..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++. .++..+. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998887 6777777443 6777776 77777 5555455 9999999
Q ss_pred EccC-CcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 80 NVET-GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 80 d~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
|... ......+. +...+..+.+.+.....+.... ....+.++.... +..+..+.+|...+.++.|+|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~ 209 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS----LDGTIKLWDLRT------GKPLSTLAGHTDPVSSLAFSPD 209 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC----CCCceEEEEcCC------CceEEeeccCCCceEEEEEcCC
Confidence 9987 44444443 3345556777777654443321 122333443322 3566677789999999999999
Q ss_pred Cc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce-EEEE-eeccc
Q 020461 158 NR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTY-VTERP 234 (326)
Q Consensus 158 ~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~-~~~~~ 234 (326)
+. .+++++.|+.|++||...+..... ...+|.... ...+++++.++++++.|+.+++|+.+.... +..+ .+...
T Consensus 210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 286 (466)
T COG2319 210 GGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286 (466)
T ss_pred cceEEEEecCCCcEEEEECCCCcEEee--ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc
Confidence 98 666669999999999886655542 223565554 338999998999999999999999987664 3333 23567
Q ss_pred eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc--ccccCcceeEEEECCCCceEEee-cCCCc
Q 020461 235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG--VKGHFGPINALAFNPDGKSFSSG-GEDGY 311 (326)
Q Consensus 235 ~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~v~~s~d~~~lat~-s~Dg~ 311 (326)
+.++.+.|++..+++ ++.+. .+..+|.+.... ... ...|...+..+.|++++..++.+ ..|+.
T Consensus 287 v~~~~~~~~~~~~~~-~~~d~-~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 352 (466)
T COG2319 287 VLSVAFSPDGKLLAS-GSSDG-TVRLWDLETGKL------------LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352 (466)
T ss_pred EEEEEECCCCCEEEE-eeCCC-cEEEEEcCCCce------------EEEeeecccCCceEEEEECCCCCEEEEeecCCCc
Confidence 889999997777777 55553 243333332221 111 23677789999994443555555 78899
Q ss_pred EEEeecCCCc
Q 020461 312 VRLHHFDPDY 321 (326)
Q Consensus 312 i~l~~~~~~~ 321 (326)
+++|..+...
T Consensus 353 ~~~~~~~~~~ 362 (466)
T COG2319 353 IRLWDLRTGK 362 (466)
T ss_pred EEeeecCCCc
Confidence 9999887664
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=7.2e-17 Score=126.88 Aligned_cols=247 Identities=19% Similarity=0.282 Sum_probs=170.7
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEEecCCC-------Ce-----eeeccC-cccceEEEEEc-------CCCCeEEEEeC
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNG-------ER-----LGTYRG-HNGAVWCCDVS-------RDSMTLITGSA 72 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~-------~~-----~~~~~~-h~~~V~~~~~~-------~~~~~l~s~~~ 72 (326)
.....|||||..|++-+.|..+++|++... .. ..+++- ....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456789999999999999999999987421 11 111111 12346665553 56778999999
Q ss_pred CCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEE
Q 020461 73 DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (326)
Q Consensus 73 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (326)
|.-|++||.-+|+...++..- . .. . . -....++
T Consensus 132 ~~PIh~wdaftG~lraSy~~y--------d--------------h~------d------------e-------~taAhsL 164 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAY--------D--------------HQ------D------------E-------YTAAHSL 164 (406)
T ss_pred cCceeeeeccccccccchhhh--------h--------------hH------H------------h-------hhhheeE
Confidence 999999999998876543210 0 00 0 0 0123468
Q ss_pred EEecCCcEEEEeeCCCcEEEEEC-CCCccccc---ccc-ccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCCcceE
Q 020461 153 VWGPLNRTIISAGEDAIVRIWDT-ETGKLLKE---SDK-ETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELI 226 (326)
Q Consensus 153 ~~~~~~~~l~s~~~d~~i~~wd~-~~~~~~~~---~~~-~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~ 226 (326)
.|+|+|.+|+. +....|+++|+ +.|+.... +.. ..+..+.+.+++++|-.. .++.|+....+-|+.-....++
T Consensus 165 ~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl 243 (406)
T KOG2919|consen 165 QFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL 243 (406)
T ss_pred EecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce
Confidence 89999999885 45778999999 55544322 111 223467788999999655 8999999999888887777777
Q ss_pred EEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCc-ceeEEEE--CCCCce
Q 020461 227 KTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG-PINALAF--NPDGKS 302 (326)
Q Consensus 227 ~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~--s~d~~~ 302 (326)
..+. +..-|.-+.|.++|+.+++++..+.. +..||.|.. ...+-.+..|.+ +=..|-| .|+++.
T Consensus 244 ~llggh~gGvThL~~~edGn~lfsGaRk~dk-Il~WDiR~~-----------~~pv~~L~rhv~~TNQRI~FDld~~~~~ 311 (406)
T KOG2919|consen 244 QLLGGHGGGVTHLQWCEDGNKLFSGARKDDK-ILCWDIRYS-----------RDPVYALERHVGDTNQRILFDLDPKGEI 311 (406)
T ss_pred eeecccCCCeeeEEeccCcCeecccccCCCe-EEEEeehhc-----------cchhhhhhhhccCccceEEEecCCCCce
Confidence 6654 45678999999999999988765543 234554432 223334455655 3344555 589999
Q ss_pred EEeecCCCcEEEeecCC
Q 020461 303 FSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 303 lat~s~Dg~i~l~~~~~ 319 (326)
||+|+.||.|++|++..
T Consensus 312 LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 312 LASGDTDGSVRVWDLKD 328 (406)
T ss_pred eeccCCCccEEEEecCC
Confidence 99999999999999875
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=3.1e-17 Score=127.09 Aligned_cols=254 Identities=19% Similarity=0.227 Sum_probs=170.1
Q ss_pred ceeEEEEc--cCC-CEEEeecC----CCCeEEEec--CCCCeeeec-cCcccceEEEEEcCCCC-----eEEEEeCCCcE
Q 020461 12 PLTYLKYN--KDG-DLLFSCAK----DHTPTVWFA--DNGERLGTY-RGHNGAVWCCDVSRDSM-----TLITGSADQTA 76 (326)
Q Consensus 12 ~i~~~~~s--~~~-~~l~s~~~----d~~v~iw~~--~~~~~~~~~-~~h~~~V~~~~~~~~~~-----~l~s~~~d~~i 76 (326)
++.++.|| |+. -+|+.||. +..|.|-.+ .+++.+..- -.|.-+++.+-|.|+.. +|+|++ | .+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-C-eE
Confidence 35678888 443 46887773 455555533 344443221 25788999999999752 454443 3 69
Q ss_pred EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
|+|.+...+.....+. ++..+ .-..+..++++..|+.
T Consensus 124 RlWri~~ee~~~~~~~----------------~L~~~---------------------------kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQS----------------VLNNN---------------------------KNSEFCAPLTSFDWNE 160 (364)
T ss_pred EEEeccCcCCceehhh----------------hhccC---------------------------cccccCCccccccccc
Confidence 9999864322111000 00000 0012345677777876
Q ss_pred CC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC-CeEEEEeCCCeEEEeecCCcceEEEEe-e--
Q 020461 157 LN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYV-T-- 231 (326)
Q Consensus 157 ~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~-~-- 231 (326)
.. ++|.+.+-|.+..|||++++..-.......+|..+|..++|..++ ..||+.+.||.+|++|+|..+--..+. .
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence 44 578899999999999999874422223456899999999999854 368899999999999999764322221 1
Q ss_pred -ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC-ceEEeecCC
Q 020461 232 -ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KSFSSGGED 309 (326)
Q Consensus 232 -~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~-~~lat~s~D 309 (326)
..+.--++++++...++++...+..-+...|.|. ...++..+++|.+.|+.++|.|.. ..++||+.|
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~-----------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV-----------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecC-----------CCcceehhhcCcccccceEecCCCCceeeecCCc
Confidence 2356677888877777666666655555555543 234567789999999999999965 579999999
Q ss_pred CcEEEeecCCCc
Q 020461 310 GYVRLHHFDPDY 321 (326)
Q Consensus 310 g~i~l~~~~~~~ 321 (326)
..+-+|+++.-.
T Consensus 310 ~qaliWDl~q~~ 321 (364)
T KOG0290|consen 310 CQALIWDLQQMP 321 (364)
T ss_pred ceEEEEeccccc
Confidence 999999997643
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=1.4e-17 Score=130.77 Aligned_cols=222 Identities=18% Similarity=0.329 Sum_probs=153.5
Q ss_pred cCCCEEEeecCCCCeEEEecCCCCeeeeccC--cccce---EEEEEcCCCCeEEEEeCCCcEEEEEccC-CcEE--E-EE
Q 020461 20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRG--HNGAV---WCCDVSRDSMTLITGSADQTAKLWNVET-GAQL--F-TF 90 (326)
Q Consensus 20 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~--h~~~V---~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~--~-~~ 90 (326)
|+.+++++.+.+.-|.+||.-+|+....+++ |...+ .+++|+|||.+|++ +....||++|+.. |.-- . ++
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhh
Confidence 7889999999999999999999998877765 55444 57999999998874 5667899999943 3211 0 01
Q ss_pred e-----cCCCcceeeeecCCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461 91 N-----FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (326)
Q Consensus 91 ~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 164 (326)
. ..+-+.++.++|.+. ..++.+-. .... +.. .....++..+-+|.+.|+.+.|.++|+.|++|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~-----q~~g---iy~---~~~~~pl~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYG-----QRVG---IYN---DDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeeccc-----ceee---eEe---cCCCCceeeecccCCCeeeEEeccCcCeeccc
Confidence 1 122234445665443 33322210 0000 111 12345666777999999999999999999988
Q ss_pred eC-CCcEEEEECCCC-ccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC-cceEEEEe-eccceEEEEe
Q 020461 165 GE-DAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTYV-TERPVNAVTM 240 (326)
Q Consensus 165 ~~-d~~i~~wd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~-~~~~~~~~~~ 240 (326)
.. |..|..||++.. ..+..+....+....-.-.+..|++..|++|+.||.|++||++. ++.+..+. ....++.+++
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence 76 778999999753 33333433333333444567789999999999999999999998 55455543 3456899999
Q ss_pred CCCCCeeEEecCC
Q 020461 241 SPLLDHVVLGGGQ 253 (326)
Q Consensus 241 s~~~~~~~~~~~~ 253 (326)
+|....++++.|+
T Consensus 349 nP~mpilatssGq 361 (406)
T KOG2919|consen 349 NPIMPILATSSGQ 361 (406)
T ss_pred CcccceeeeccCc
Confidence 9998888777654
No 174
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=5.6e-18 Score=152.73 Aligned_cols=248 Identities=15% Similarity=0.205 Sum_probs=171.3
Q ss_pred eEEEEccCCC-EEEee----------cCCCCeEEEecCC--CC----eeeeccCcccceEEEEEcCCCCe----EEEEeC
Q 020461 14 TYLKYNKDGD-LLFSC----------AKDHTPTVWFADN--GE----RLGTYRGHNGAVWCCDVSRDSMT----LITGSA 72 (326)
Q Consensus 14 ~~~~~s~~~~-~l~s~----------~~d~~v~iw~~~~--~~----~~~~~~~h~~~V~~~~~~~~~~~----l~s~~~ 72 (326)
..++|||.+. ++++| +.+.++.||.+.. .+ .+..+.. ...-+.++|.+.+.. ++.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s-~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS-SNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccc-cccceeeeecccCCCccceeecccc
Confidence 4578999887 55543 3355666775432 22 1222221 234567888876654 888889
Q ss_pred CCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEE
Q 020461 73 DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (326)
Q Consensus 73 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (326)
||.|-+||...- + . ......+.....|.+.|..+
T Consensus 89 dG~I~ly~p~~~--~---~-----------------------------------------~~~~~~la~~~~h~G~V~gL 122 (1049)
T KOG0307|consen 89 DGNIVLYDPASI--I---A-----------------------------------------NASEEVLATKSKHTGPVLGL 122 (1049)
T ss_pred CCceEEecchhh--c---c-----------------------------------------CcchHHHhhhcccCCceeee
Confidence 999999997531 0 0 00112233456788999999
Q ss_pred EEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 153 VWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 153 ~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
.|++... .+++|++||.|.|||++.-+...... ...-...|.+++|... ...|++++.+|.+.|||+|..+.+-.+.
T Consensus 123 DfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls 201 (1049)
T KOG0307|consen 123 DFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS 201 (1049)
T ss_pred eccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc
Confidence 9999876 89999999999999998754433321 2234578999999865 5568899999999999999988777764
Q ss_pred ec---cceEEEEeCCCCCeeEEe-cCCCcceeEeecccCceeeeEeeccc-ceeeeccccccCcceeEEEECCCC-ceEE
Q 020461 231 TE---RPVNAVTMSPLLDHVVLG-GGQDASAVTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNPDG-KSFS 304 (326)
Q Consensus 231 ~~---~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~v~~s~d~-~~la 304 (326)
.. ..++.++|+|+...-++. .++|.. -.+.+||.. ...++..+.+|...|.+|.|++.. .+|+
T Consensus 202 ~~~~~~~~S~l~WhP~~aTql~~As~dd~~-----------PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lll 270 (1049)
T KOG0307|consen 202 DTPGRMHCSVLAWHPDHATQLLVASGDDSA-----------PVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLL 270 (1049)
T ss_pred cCCCccceeeeeeCCCCceeeeeecCCCCC-----------ceeEeecccccCCchhhhcccccceeeeccCCCCchhhh
Confidence 32 347899999998764444 333322 124455521 223455568999999999999855 8999
Q ss_pred eecCCCcEEEeecCCC
Q 020461 305 SGGEDGYVRLHHFDPD 320 (326)
Q Consensus 305 t~s~Dg~i~l~~~~~~ 320 (326)
|++.|++|-+|+....
T Consensus 271 SsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 271 SSGKDNRIICWNPNTG 286 (1049)
T ss_pred cccCCCCeeEecCCCc
Confidence 9999999999998764
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=4.3e-15 Score=126.16 Aligned_cols=278 Identities=13% Similarity=0.154 Sum_probs=161.3
Q ss_pred EEeecCCCCeEEEecCC-CC--eeeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEEEccC-CcEEE--EEecCCCcc
Q 020461 25 LFSCAKDHTPTVWFADN-GE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVET-GAQLF--TFNFDSPAR 97 (326)
Q Consensus 25 l~s~~~d~~v~iw~~~~-~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~~~-~~~~~--~~~~~~~~~ 97 (326)
+++...++.|++|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++. ++... .........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 44457789999999964 33 444443 345567789999999887665 578899999973 43322 122222334
Q ss_pred eeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCCcEEEEECC
Q 020461 98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTE 176 (326)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~~i~~wd~~ 176 (326)
.+.+.++++.+.++... ...+.++.+..+.. .........+ ......++++|++++++ +...++.|.+||++
T Consensus 84 ~i~~~~~g~~l~v~~~~----~~~v~v~~~~~~g~--~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 84 HISTDHQGRFLFSASYN----ANCVSVSPLDKDGI--PVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred EEEECCCCCEEEEEEcC----CCeEEEEEECCCCC--CCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 56667766655544321 12333333321110 0011222222 23456678999998775 55567999999997
Q ss_pred CCcccccc---ccccCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecCC--c--ceEEEEee-------ccceEEEEeC
Q 020461 177 TGKLLKES---DKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDART--L--ELIKTYVT-------ERPVNAVTMS 241 (326)
Q Consensus 177 ~~~~~~~~---~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~~--~--~~~~~~~~-------~~~~~~~~~s 241 (326)
+...+... ............+.++|+|+++++++. +++|.+||++. + +.+.++.. +.....+.++
T Consensus 157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~ 236 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT 236 (330)
T ss_pred CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence 63322110 000111234568899999999988876 89999999973 2 33333321 1123358899
Q ss_pred CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecC-CCcEEEeecCCC
Q 020461 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE-DGYVRLHHFDPD 320 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~-Dg~i~l~~~~~~ 320 (326)
|+++.++++...+. .+..++........+ .++.... ......++|+|||++|++++. +++|.+|+++.+
T Consensus 237 pdg~~lyv~~~~~~-~I~v~~i~~~~~~~~--------~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 237 PDGRHLYACDRTAS-LISVFSVSEDGSVLS--------FEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred CCCCEEEEecCCCC-eEEEEEEeCCCCeEE--------EeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 99998888643222 233333211110000 0111110 023467999999999887765 999999999754
No 176
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=1.7e-17 Score=138.47 Aligned_cols=208 Identities=19% Similarity=0.272 Sum_probs=156.6
Q ss_pred CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeee
Q 020461 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF 101 (326)
Q Consensus 22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 101 (326)
...++.|++||.+.|-+ +.++......+|.++|.+-.|+|||.-|+++|.||.||+|.-...-.....++..++.+..|
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEE
Confidence 35788899999998876 46677778899999999999999999999999999999998665444344466778888899
Q ss_pred ecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccc
Q 020461 102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 181 (326)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 181 (326)
.|++.-++.+..... .+..++ ....+..++.|.+-|.++.|+|....+++||+|-..++||-.- ..+
T Consensus 154 ~p~S~~vl~c~g~h~------~IKpL~------~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~L 220 (737)
T KOG1524|consen 154 APNSNSIVFCQGGHI------SIKPLA------ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANL 220 (737)
T ss_pred CCCCCceEEecCCeE------EEeecc------cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-ccc
Confidence 887655444433221 111111 1234567889999999999999999999999999999999753 333
Q ss_pred cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCccee
Q 020461 182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAV 258 (326)
Q Consensus 182 ~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 258 (326)
.+ ...|..+|++++|.|+ ..++.+|.. ++|+=.++ ...+..++||++|.+...+.+.+...+
T Consensus 221 f~---S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~p~----------~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 221 FT---SAAEEYAITSVAFNPE-KDYLLWSYN-TARFSSPR----------VGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cc---CChhccceeeeeeccc-cceeeeeee-eeeecCCC----------ccceEEEEEcCCCceeeccccCceEEE
Confidence 22 3468999999999999 677777763 55532222 356788999999998887766655443
No 177
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.1e-15 Score=134.56 Aligned_cols=311 Identities=18% Similarity=0.243 Sum_probs=193.6
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCC---CeEEEEeCCCcEEEE
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS---MTLITGSADQTAKLW 79 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~---~~l~s~~~d~~i~~w 79 (326)
|..+-|-...=....||+|++.++.+..+ .|.||...+++++..+.+|..++..+.+.|.. .++++++.||+|++|
T Consensus 9 ~~~lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 9 PALLGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred eeeeccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 44444444433456899999998877665 89999999999999999999999999987754 367899999999999
Q ss_pred EccCCcEEEEEecCCCcceeeeec----CCeEEEEEcC---------ccc------------------------------
Q 020461 80 NVETGAQLFTFNFDSPARSVDFAV----GDKLAVITTD---------PFM------------------------------ 116 (326)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~~~------------------------------ 116 (326)
|...++.+..+....++....+.+ .+..+.++.+ +..
T Consensus 88 d~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~ 167 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV 167 (792)
T ss_pred cCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE
Confidence 999998887775443333222110 0101100000 000
Q ss_pred ----------eeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCC--Ccccccc
Q 020461 117 ----------ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET--GKLLKES 184 (326)
Q Consensus 117 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~ 184 (326)
.....+..+...... ........-+.|.-.+++.++||.++++++|..||.|.+|.--. ... .+.
T Consensus 168 ~~~~ge~~~i~~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~-~t~ 244 (792)
T KOG1963|consen 168 DNNSGEFKGIVHMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS-ETC 244 (792)
T ss_pred EcCCceEEEEEEeeeEEEEEecccc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc-ccc
Confidence 000000000000000 00000001123555688999999999999999999999996322 111 112
Q ss_pred ccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe--eccceEEEEeCCCCCeeEEecCCCcc-eeEee
Q 020461 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDAS-AVTTT 261 (326)
Q Consensus 185 ~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~ 261 (326)
....-|...|++++|+++|.+|++|+..+.+-.|.+.+++ +++. ...++..+.++|+++...+.-.+... .+...
T Consensus 245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred eEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 2234578899999999999999999999999999999988 4543 35789999999998876654332211 11111
Q ss_pred cccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCcee
Q 020461 262 DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN 323 (326)
Q Consensus 262 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~ 323 (326)
|..... .+.-....... .-+.-++-.+.++++|--+.++-.+.-|.|.+|++-.+-.-
T Consensus 323 dl~~k~-tIsgi~~~~~~---~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 323 DLEIKS-TISGIKPPTPS---TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred chhhhh-hccCccCCCcc---ccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 111000 00000000000 00112344677999997788888999999999988665443
No 178
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.9e-17 Score=136.18 Aligned_cols=176 Identities=21% Similarity=0.305 Sum_probs=132.3
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeec-cCcccceEEEEEcC--CCCeEEEEeCCCcEEEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSR--DSMTLITGSADQTAKLWN 80 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-~~h~~~V~~~~~~~--~~~~l~s~~~d~~i~~wd 80 (326)
..|.||.+-|.|+.|+.+|.+|++||.|..+.|||....++++.+ .+|.+.|+++.|-| +.+.++||+.|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 358899999999999999999999999999999998877777666 47999999999988 456899999999999999
Q ss_pred ccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-c
Q 020461 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-R 159 (326)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 159 (326)
+...+.-. . ...-.+....+..|..+|..++.-|.+ .
T Consensus 124 l~~~~~~~----------~--------------------------------d~~~~~~~~~~~cht~rVKria~~p~~Ph 161 (758)
T KOG1310|consen 124 LDSSKEGG----------M--------------------------------DHGMEETTRCWSCHTDRVKRIATAPNGPH 161 (758)
T ss_pred cccccccc----------c--------------------------------ccCccchhhhhhhhhhhhhheecCCCCCc
Confidence 87532100 0 000012333455677778788888887 5
Q ss_pred EEEEeeCCCcEEEEECCCCccccc-------cccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecC
Q 020461 160 TIISAGEDAIVRIWDTETGKLLKE-------SDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDAR 221 (326)
Q Consensus 160 ~l~s~~~d~~i~~wd~~~~~~~~~-------~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~ 221 (326)
.+.++++||+|+-+|++....... +....+..-...++.++|. ..+|+.|+.|-..++||.+
T Consensus 162 tfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 162 TFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 889999999999999975322110 0001112245678888885 5578999999999999965
No 179
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=4.6e-16 Score=122.19 Aligned_cols=223 Identities=18% Similarity=0.266 Sum_probs=162.9
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC---eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
+.--.++|+|.+|++|+..+|.+-+++.|-||...... ..++++.|...|++++|+|..+.|++|+.|..-.+|...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 34456789999999999999999999999999876554 678999999999999999999999999999999999873
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
.+... .+..++.-++...+++.|+|.++.|+
T Consensus 86 ~~~~W-------------------------------------------------kptlvLlRiNrAAt~V~WsP~enkFA 116 (361)
T KOG1523|consen 86 SGGTW-------------------------------------------------KPTLVLLRINRAATCVKWSPKENKFA 116 (361)
T ss_pred CCCee-------------------------------------------------ccceeEEEeccceeeEeecCcCceEE
Confidence 32211 12223334566788899999999999
Q ss_pred EeeCCCcEEEEECCCCccc--cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEe
Q 020461 163 SAGEDAIVRIWDTETGKLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~--~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 240 (326)
+|+....|.||-.+....- ... ....++..|++++|+|++-+|++||.|+..|++..- ++.... .+ +=
T Consensus 117 VgSgar~isVcy~E~ENdWWVsKh-ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay----IK~Vde-kp----ap 186 (361)
T KOG1523|consen 117 VGSGARLISVCYYEQENDWWVSKH-IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY----IKGVDE-KP----AP 186 (361)
T ss_pred eccCccEEEEEEEecccceehhhh-hCCccccceeeeeccCCcceecccccCcceeEEEEe----eecccc-CC----CC
Confidence 9999999999987654322 110 113567889999999999999999999999999732 222111 00 11
Q ss_pred CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH 315 (326)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~ 315 (326)
+|.++.+-. ++...++..-.+.|..+.|+|+|..||=.+.|+++.+=
T Consensus 187 ~pWgsk~PF----------------------------G~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 187 TPWGSKMPF----------------------------GQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred CCCccCCcH----------------------------HHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 122211110 11111122234689999999999999999999999883
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=6.5e-17 Score=130.58 Aligned_cols=158 Identities=24% Similarity=0.375 Sum_probs=123.8
Q ss_pred ccceEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccC
Q 020461 52 NGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD 130 (326)
Q Consensus 52 ~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (326)
..+|..+.|.+++. .++||+.|..|++|-++.++.-. .
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~--------~--------------------------------- 51 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG--------G--------------------------------- 51 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC--------C---------------------------------
Confidence 44799999998776 99999999999999886543210 0
Q ss_pred CCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECC--------C-----CccccccccccCcceeeEEE
Q 020461 131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE--------T-----GKLLKESDKETGHKKTITSL 197 (326)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~--------~-----~~~~~~~~~~~~h~~~v~~v 197 (326)
....+....+..|...|+.+.|+|+|..+++|+++|.|.+|-.. + .+.........+|...+..+
T Consensus 52 --~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL 129 (434)
T KOG1009|consen 52 --DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDL 129 (434)
T ss_pred --ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhh
Confidence 00112344567899999999999999999999999999999876 2 11111223345799999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecC
Q 020461 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 198 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~ 252 (326)
+|++++.++++++.|.++++||++.+.....+. +...++.++|.|....+..-+.
T Consensus 130 ~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 130 AWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSS 185 (434)
T ss_pred hccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhcc
Confidence 999999999999999999999999999888774 5667999999998777665433
No 181
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.5e-15 Score=136.32 Aligned_cols=290 Identities=18% Similarity=0.220 Sum_probs=177.1
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCccc---ceEEEEEcC--CCCeEEEEeCCCcEEEEEcc---
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSR--DSMTLITGSADQTAKLWNVE--- 82 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~---~V~~~~~~~--~~~~l~s~~~d~~i~~wd~~--- 82 (326)
.+...+.|+|-...++++...-+|++||.+.+++...|..+.. .|+.+.+-. |...+++|+.||.||+|+--
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 3456788999888999999888999999999999888876543 577777643 45689999999999999642
Q ss_pred --CCcEEEEEecCC--------CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEE-EeccCccceeE
Q 020461 83 --TGAQLFTFNFDS--------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGPQGRINR 151 (326)
Q Consensus 83 --~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~ 151 (326)
..+.+..+..-. ...-.+|--......++++ ...+.+|+..+.. .+. ...+....++.
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-----~r~IRIWDa~~E~------~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-----VRSIRIWDAHKEQ------VVADIPYGSSTLVTA 1213 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-----eeEEEEEecccce------eEeecccCCCcccee
Confidence 223333332100 0001111111111222221 1223444432211 111 11122333444
Q ss_pred EEEe-cCCcEEEEeeCCCcEEEEECCCCccccccccccCccee--eEEEEEcCCCCe-EEEEeCCCeEEEeecCCcce--
Q 020461 152 AVWG-PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT--ITSLAKAADGSH-FLTGSLDKSAKLWDARTLEL-- 225 (326)
Q Consensus 152 ~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~--v~~v~~s~~~~~-l~s~s~dg~i~iwd~~~~~~-- 225 (326)
+.-+ +.|..++.|..||.|++||.+.......+..-..|+.. |..+.+.+.|-. |++|+.||.|++||+|....
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence 4332 23688999999999999998865442222222356655 889988887665 99999999999999998421
Q ss_pred EEEEee----ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeec-ccceeeeccccccCcceeEEEECCCC
Q 020461 226 IKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD-KILQEEIGGVKGHFGPINALAFNPDG 300 (326)
Q Consensus 226 ~~~~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~v~~s~d~ 300 (326)
..+... +....++..+++.+.++++++ .. +..++.......+..++ .-.+ ...+.+.|++|+|..
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~--ikIy~~~G~~l~~~k~n~~F~~-------q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL--IKIYSLSGEQLNIIKYNPGFMG-------QRIGSVSCLAFHPHR 1363 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCc-ce--EEEEecChhhhcccccCccccc-------CcCCCcceeeecchh
Confidence 111111 234788999998877776654 32 23333222111111111 1111 123457999999999
Q ss_pred ceEEeecCCCcEEEeecCCCc
Q 020461 301 KSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 301 ~~lat~s~Dg~i~l~~~~~~~ 321 (326)
.++|+|+.|.+|.|+..++.-
T Consensus 1364 ~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred HhhhhccCCceEEEeecCCcC
Confidence 999999999999999887654
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=5.1e-15 Score=130.51 Aligned_cols=303 Identities=19% Similarity=0.240 Sum_probs=183.7
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCC--C--CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--G--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~--~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
.|...++|.++||+++++|++..||.|.+|.--. + .....+.=|...|++++|+++|.+|+|||..+.+-+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 3566689999999999999999999999995322 1 22345566899999999999999999999999999999999
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEE-EcCccceeceeeeeeeeccCCCCCCCceE-EE-eccCccceeEEEEecCCcE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESV-LI-LKGPQGRINRAVWGPLNRT 160 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~~~~~~~~~~~ 160 (326)
++..+.-+..+++..+.+++++...++ ..+..+.+-.. -+++-.....+-.+. .. -+...+-.+-+.++|..+.
T Consensus 283 ~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~---~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 283 GKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA---SDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred CCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec---cchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 986655566778888888876554433 33322211000 000000000000000 00 1112333455778887778
Q ss_pred EEEeeCCCcEEEEECCCCccccccccc--------cCcceeeEEEEEcCCCCeEEEEe--------CCC--eEEEeecCC
Q 020461 161 IISAGEDAIVRIWDTETGKLLKESDKE--------TGHKKTITSLAKAADGSHFLTGS--------LDK--SAKLWDART 222 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~~~~~~~~~--------~~h~~~v~~v~~s~~~~~l~s~s--------~dg--~i~iwd~~~ 222 (326)
++-.+..+.|.+||+.+.+.+..+... .-++-.+++++.+..|++++|.- .|| .+|+|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 888899999999999876655443211 12345678888888899999874 243 478896543
Q ss_pred cc----eEEEEe--eccceEEEEe-CCCCC-eeEEecCCCcceeEeecccCceee-eEeecccceeeeccccccCcceeE
Q 020461 223 LE----LIKTYV--TERPVNAVTM-SPLLD-HVVLGGGQDASAVTTTDHRAGKFE-AKFFDKILQEEIGGVKGHFGPINA 293 (326)
Q Consensus 223 ~~----~~~~~~--~~~~~~~~~~-s~~~~-~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~ 293 (326)
.. +...+. ++......++ ++..+ .++.++..+...++.+........ -..|. ...++. .|..++++
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~---c~~i~s--y~k~~i~a 514 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWT---CKAIGS--YHKTPITA 514 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceE---Eeeeec--cccCcccc
Confidence 32 222222 2222222232 22222 344333322222222211000000 00111 122332 37889999
Q ss_pred EEECCCCceEEeecCCCcEEEeecCC
Q 020461 294 LAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 294 v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
.+|+-||..|| +|.|++|.+|+++.
T Consensus 515 ~~fs~dGslla-~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 515 LCFSQDGSLLA-VSFDDTITIWDYDT 539 (792)
T ss_pred hhhcCCCcEEE-EecCCEEEEecCCC
Confidence 99999996555 77899999999987
No 183
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.72 E-value=4.4e-16 Score=127.66 Aligned_cols=217 Identities=18% Similarity=0.205 Sum_probs=156.6
Q ss_pred CeeeeccCcccceEEEEEcCCC--CeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceece
Q 020461 43 ERLGTYRGHNGAVWCCDVSRDS--MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120 (326)
Q Consensus 43 ~~~~~~~~h~~~V~~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
......+-|.+.|++++|+|.. +.+++|+.-|.|-+||+.+.+..
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d--------------------------------- 223 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD--------------------------------- 223 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc---------------------------------
Confidence 3344556788999999999964 47888889999999999632210
Q ss_pred eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE
Q 020461 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199 (326)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~ 199 (326)
...+..+..|.++|.++.|+|.+ ..+++.+-||+|++=|++...... +............+++
T Consensus 224 ---------------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~-v~s~~~d~~~fs~~d~ 287 (498)
T KOG4328|consen 224 ---------------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE-VLSLDTDNIWFSSLDF 287 (498)
T ss_pred ---------------cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHH-HhhcCccceeeeeccc
Confidence 01223345678899999999976 588999999999999998654322 2222123345677788
Q ss_pred cCCCCeEEEEeCCCeEEEeecCCcce-EEEE-eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc
Q 020461 200 AADGSHFLTGSLDKSAKLWDARTLEL-IKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 277 (326)
Q Consensus 200 s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 277 (326)
+.+...++.+..=|...+||.++... ...+ .+...|+.++++|...+++++++.|... ..||.|.-.-..
T Consensus 288 ~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~-kIWD~R~l~~K~------- 359 (498)
T KOG4328|consen 288 SAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTA-KIWDLRQLRGKA------- 359 (498)
T ss_pred cCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcce-eeeehhhhcCCC-------
Confidence 88877788888777999999998654 2222 3456899999999999999988877642 244444321111
Q ss_pred eeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 278 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 278 ~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
.++-....|...|++..|||++..|+|.+.|..||||+-
T Consensus 360 -sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 360 -SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred -CcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 112233468999999999999988999999999999876
No 184
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=1.8e-14 Score=115.44 Aligned_cols=240 Identities=15% Similarity=0.196 Sum_probs=166.5
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC--CcEEEEEccCCcEE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD--QTAKLWNVETGAQL 87 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~ 87 (326)
...+..+.|..+...|..|+.||. ++++.+.-+...........|-..-|+.. +++..+.+ +.+++.+++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceE
Confidence 456788889999999999999987 88887665442222222223434446644 55555544 44888888888777
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 167 (326)
+.+.++.++.++. ++ .+.|+.+-.+
T Consensus 82 Ce~~fpt~IL~Vr-----------------------------------------------------mN--r~RLvV~Lee 106 (391)
T KOG2110|consen 82 CEIFFPTSILAVR-----------------------------------------------------MN--RKRLVVCLEE 106 (391)
T ss_pred EEEecCCceEEEE-----------------------------------------------------Ec--cceEEEEEcc
Confidence 7766654433221 11 1234555544
Q ss_pred CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe--CCCeEEEeecCCcceEEEEe-eccceEEEEeCCCC
Q 020461 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL 244 (326)
Q Consensus 168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~ 244 (326)
. |.|+|+++.+.+.++.....+...+.++..+..+.+++-=+ ..|.|.+||..+-+.+..+. +..++.+++|+++|
T Consensus 107 ~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G 185 (391)
T KOG2110|consen 107 S-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG 185 (391)
T ss_pred c-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC
Confidence 4 99999999999888876667777888888888888888533 36889999999988888875 56789999999999
Q ss_pred CeeEEecCCCcceeEeecccCceeeeEeecccceeeecccc-c-cCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK-G-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
..++.+.. .+..+..+.. ..++++..++ | -...|.+++|+||+++|++.|.-++|.+|.++...
T Consensus 186 ~llATASe-KGTVIRVf~v------------~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 186 TLLATASE-KGTVIRVFSV------------PEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CEEEEecc-CceEEEEEEc------------CCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 87776544 3444433333 2222222211 1 12468999999999999999999999999998765
No 185
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2e-15 Score=132.23 Aligned_cols=222 Identities=17% Similarity=0.188 Sum_probs=142.9
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCC---CCeEEEecCCCCe--eeeccCcccceEEEEEcCCCCeEEEEe-CCCcE
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTA 76 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d---~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i 76 (326)
+..+..|...+...+|||||++|+.++.+ ..|++||+.+++. +..+.+|. ..++|+|||+.|+.++ .++.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcE
Confidence 35567788889999999999999887654 4699999988754 44444543 4679999999887764 68877
Q ss_pred EEEEc--cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461 77 KLWNV--ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (326)
Q Consensus 77 ~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (326)
++|.+ .+++.. .+..+...+....|
T Consensus 273 ~Iy~~d~~~~~~~-----------------------------------------------------~lt~~~~~~~~~~w 299 (429)
T PRK01742 273 NIYVMGANGGTPS-----------------------------------------------------QLTSGAGNNTEPSW 299 (429)
T ss_pred EEEEEECCCCCeE-----------------------------------------------------eeccCCCCcCCEEE
Confidence 77744 332211 01112233456789
Q ss_pred ecCCcEEEEee-CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc
Q 020461 155 GPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (326)
Q Consensus 155 ~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 233 (326)
+|+++.|+..+ .++...||++.......... .+.. ....++|||++|+..+.++ +.+||+.+++..... ...
T Consensus 300 SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt-~~~ 372 (429)
T PRK01742 300 SPDGQSILFTSDRSGSPQVYRMSASGGGASLV---GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS-STF 372 (429)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeEEe---cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec-CCC
Confidence 99999776554 57888999875322111111 2222 3568999999998888765 555999887654322 122
Q ss_pred ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461 234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (326)
Q Consensus 234 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d 299 (326)
......|+|++..++.+...+...+ ++.++ ..+.....+.+|.+.+...+|||-
T Consensus 373 ~~~~~~~sPdG~~i~~~s~~g~~~~-----------l~~~~-~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 373 LDESPSISPNGIMIIYSSTQGLGKV-----------LQLVS-ADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCceECCCCCEEEEEEcCCCceE-----------EEEEE-CCCCceEEccCCCCCCCCcccCCC
Confidence 3456789999998887654332211 11111 123334445677888899999984
No 186
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=2.3e-14 Score=112.75 Aligned_cols=242 Identities=14% Similarity=0.182 Sum_probs=153.1
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccce--EEEEEcCCCCeE-EEEeCC------CcEEEEEccC
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV--WCCDVSRDSMTL-ITGSAD------QTAKLWNVET 83 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V--~~~~~~~~~~~l-~s~~~d------~~i~~wd~~~ 83 (326)
...++|+.|-.-++.+-.+ -.|||+.+--.....-+-+.+.+ ..+-| -.++| +.||.+ .++-+||-..
T Consensus 8 ~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 4558999998877766555 56999886532211111112211 11111 12343 334433 5789999777
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC--CcEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTI 161 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l 161 (326)
..++..+.+..++..+.+..+..+++.. ..+.++....++ +.+..+..-.++-.-++..|. ..+|
T Consensus 85 ~~~i~el~f~~~I~~V~l~r~riVvvl~--------~~I~VytF~~n~-----k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 85 ERCIIELSFNSEIKAVKLRRDRIVVVLE--------NKIYVYTFPDNP-----KLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred CcEEEEEEeccceeeEEEcCCeEEEEec--------CeEEEEEcCCCh-----hheeeeecccCCCceEeecCCCCceEE
Confidence 8888888888999988887655444432 233333332221 111111111111112333332 2345
Q ss_pred EE-eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCe-EEEeecCCcceEEEEeeccceEEEE
Q 020461 162 IS-AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLELIKTYVTERPVNAVT 239 (326)
Q Consensus 162 ~s-~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~ 239 (326)
+. |-.-|.|+|-|+..-+.-.. ....+|...|.|++.+.+|..+||+|..|+ |||||.++++.++++..+.
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p-~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~------ 224 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAP-SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV------ 224 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCc-eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC------
Confidence 43 45578999999875443111 122479999999999999999999999998 7999999999887764220
Q ss_pred eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
-.+.|.+|+|||++.+||.+|+.|+|.||.+.+
T Consensus 225 -----------------------------------------------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 225 -----------------------------------------------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred -----------------------------------------------chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 124689999999999999999999999999988
Q ss_pred Cceee
Q 020461 320 DYFNI 324 (326)
Q Consensus 320 ~~~~~ 324 (326)
...+.
T Consensus 258 ~~~~~ 262 (346)
T KOG2111|consen 258 TENTE 262 (346)
T ss_pred CCCCc
Confidence 65443
No 187
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=1.5e-14 Score=126.73 Aligned_cols=266 Identities=14% Similarity=0.123 Sum_probs=171.9
Q ss_pred ceeeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCe--eee----ccCcccceEEEEEcCCC--CeEEEEeCC
Q 020461 3 PILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGER--LGT----YRGHNGAVWCCDVSRDS--MTLITGSAD 73 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~--~~~----~~~h~~~V~~~~~~~~~--~~l~s~~~d 73 (326)
|-+.-.-..+|.|+.|+|. .++++.|..+|.|.+||+..+.. ... ...|..+|+.+.|-.+. .-+++++.|
T Consensus 235 Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD 314 (555)
T KOG1587|consen 235 PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD 314 (555)
T ss_pred ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC
Confidence 3333444567999999985 56888899999999999987655 222 23588889998886543 459999999
Q ss_pred CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461 74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (326)
Q Consensus 74 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (326)
|.|..|+++.-........ .. .. .. ...-......++.+.
T Consensus 315 G~i~~W~~~~l~~P~e~~~--------~~-----------------~~--~~-------------~~~~~~~~~~~t~~~ 354 (555)
T KOG1587|consen 315 GSICSWDTDMLSLPVEGLL--------LE-----------------SK--KH-------------KGQQSSKAVGATSLK 354 (555)
T ss_pred CcEeeeeccccccchhhcc--------cc-----------------cc--cc-------------cccccccccceeeEe
Confidence 9999997653221100000 00 00 00 000001112355666
Q ss_pred EecCC-cEEEEeeCCCcEEEEECCCCcccc-----ccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC-CcceE
Q 020461 154 WGPLN-RTIISAGEDAIVRIWDTETGKLLK-----ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-TLELI 226 (326)
Q Consensus 154 ~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~-----~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~-~~~~~ 226 (326)
|.+.. ..|+.|.++|.|.--.....+... -......|.++|.++.++|=+..++..+.|-+++||... ...++
T Consensus 355 F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl 434 (555)
T KOG1587|consen 355 FEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL 434 (555)
T ss_pred eccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc
Confidence 76644 468889999988763332211111 112234678999999999977766665559999999877 44444
Q ss_pred EEEee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce--eeeccccccCcceeEEEECCCCceE
Q 020461 227 KTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ--EEIGGVKGHFGPINALAFNPDGKSF 303 (326)
Q Consensus 227 ~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~v~~s~d~~~l 303 (326)
..+.. ...+.+++|||.-..+++++..++ .+.+||.... .++....-+....+.+.|++.|+.|
T Consensus 435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G-------------~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~l 501 (555)
T KOG1587|consen 435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDG-------------NLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLL 501 (555)
T ss_pred hhhhhccceeeeeEEcCcCceEEEEEcCCC-------------ceehhhhhccccCCcccccccccccceeecCCCCcEE
Confidence 44433 334889999999888887765444 2445554322 2233333334566778889999999
Q ss_pred EeecCCCcEEEeecCCCc
Q 020461 304 SSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 304 at~s~Dg~i~l~~~~~~~ 321 (326)
|.|...|++.++.+.+..
T Consensus 502 avGd~~G~~~~~~l~~~l 519 (555)
T KOG1587|consen 502 AVGDANGTTHILKLSESL 519 (555)
T ss_pred EEecCCCcEEEEEcCchh
Confidence 999999999999987654
No 188
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.69 E-value=1.9e-15 Score=117.23 Aligned_cols=158 Identities=25% Similarity=0.415 Sum_probs=121.3
Q ss_pred CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcc-ccccc--cccCcceeeEEEEEcC--CCCeEEEEeCCCeEEEee
Q 020461 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL-LKESD--KETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWD 219 (326)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~--~~~~h~~~v~~v~~s~--~~~~l~s~s~dg~i~iwd 219 (326)
+.+.|.++.|.|++..+++.. |..|.+|++..+.. ...+. ...+|+...++-+|+| ++..+++.+ |+++..||
T Consensus 122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D 199 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWD 199 (370)
T ss_pred HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEE
Confidence 446899999999998888766 77899999977655 22221 2234677788889999 666666554 79999999
Q ss_pred cCCcceEEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc-ceeeeccccccCcceeEEEE
Q 020461 220 ARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAF 296 (326)
Q Consensus 220 ~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~v~~ 296 (326)
+|+..+...+. +...+..+.|.|.-.+.++++|+|+. +++|+.. +..++..+.+|..+|++|.|
T Consensus 200 ~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-------------vriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 200 LRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-------------VRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred ccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-------------EEEEeccCCCccccccCCCceEEEEEEe
Confidence 99988777764 45679999999999988888887753 3445432 34456778899999999999
Q ss_pred CCC-CceEEeecCCCcEEEeec
Q 020461 297 NPD-GKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 297 s~d-~~~lat~s~Dg~i~l~~~ 317 (326)
+|. ..++.|||.|..|.||-.
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred cCccceEEEecCCCceeEEEec
Confidence 985 467899999999999754
No 189
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=1.1e-14 Score=132.55 Aligned_cols=269 Identities=16% Similarity=0.169 Sum_probs=171.2
Q ss_pred eeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCe-------eeeccCcccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461 6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGER-------LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~-------~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~ 77 (326)
|.-|...+..++.++. +.+++|||.||+|++|++..-+. ..++.-....+.++...+.++.+|.++.||.|+
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 4457777777777765 59999999999999999764322 112222355788888889999999999999999
Q ss_pred EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
+.+++-...... .+.. .+.... ...+. + +...++...
T Consensus 1124 ~~~id~~~~~~~------------------~~~~-------------~ri~n~--~~~g~-v---------v~m~a~~~~ 1160 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKR------------------VATQ-------------VRIPNL--KKDGV-V---------VSMHAFTAI 1160 (1431)
T ss_pred EEEccccccccc------------------eeee-------------eecccc--cCCCc-e---------EEeeccccc
Confidence 998865211000 0000 000000 00000 1 111111111
Q ss_pred --CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec--c
Q 020461 158 --NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--R 233 (326)
Q Consensus 158 --~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~ 233 (326)
...++.+...+.|..||+++............ .+.|++++.+|.+..++.|+..|.+.+||+|=+.++..+.++ .
T Consensus 1161 ~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~-hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~ 1239 (1431)
T KOG1240|consen 1161 VQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR-HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARA 1239 (1431)
T ss_pred ccceeEEEEEeccceEEecchhhhhHHhhhcCcc-ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccC
Confidence 13677888889999999987655544433333 367999999999999999999999999999999999888654 4
Q ss_pred ceEEEEeCCCCC--eeEEecCC-CcceeEeecccCceeeeEeecccceeeeccc-------cccCcceeEEEECCCCceE
Q 020461 234 PVNAVTMSPLLD--HVVLGGGQ-DASAVTTTDHRAGKFEAKFFDKILQEEIGGV-------KGHFGPINALAFNPDGKSF 303 (326)
Q Consensus 234 ~~~~~~~s~~~~--~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~v~~s~d~~~l 303 (326)
+++-++++|-.. ...++++. ....+..|+...+.....+|.......+... +.+.-......+.-.+..+
T Consensus 1240 ~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ 1319 (1431)
T KOG1240|consen 1240 PIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFL 1319 (1431)
T ss_pred CcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCcee
Confidence 677777665544 44444444 5566666666666555555544111111100 0122233344555557789
Q ss_pred EeecCCCcEEEeecC
Q 020461 304 SSGGEDGYVRLHHFD 318 (326)
Q Consensus 304 at~s~Dg~i~l~~~~ 318 (326)
.+|+.|..||.|+.-
T Consensus 1320 ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1320 LTGGSDMKIRKWDPT 1334 (1431)
T ss_pred eecCCccceeeccCC
Confidence 999999999998754
No 190
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=4.7e-15 Score=116.42 Aligned_cols=167 Identities=20% Similarity=0.238 Sum_probs=123.9
Q ss_pred eeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE
Q 020461 149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228 (326)
Q Consensus 149 i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 228 (326)
-.++.|++-|.+++.|+.||+|.|||+.+...-+.+ .+|-.+|++++||+||..|+|+|.|..|++||+..|.+++.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l---saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML---SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh---hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 678999999999999999999999999887654433 57999999999999999999999999999999999999999
Q ss_pred EeeccceEEEEeCCCCCeeEEec-CCCcceeE-------------------------eeccc-------CceeeeEeecc
Q 020461 229 YVTERPVNAVTMSPLLDHVVLGG-GQDASAVT-------------------------TTDHR-------AGKFEAKFFDK 275 (326)
Q Consensus 229 ~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~-------------------------~~d~~-------~~~~~~~~~~~ 275 (326)
+....++..+.++|.....+++. ....-.+. ++|.+ ..+..+.+++.
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 98888888888888765544322 11111000 01111 11112233343
Q ss_pred cceeeeccccccC-cceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 276 ILQEEIGGVKGHF-GPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 276 ~~~~~~~~~~~h~-~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
.+.+.++.++-.. ..|..+.|+-.|..|+.-+.|..||.+...
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 3334444333333 568889999999999999999999997765
No 191
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.8e-14 Score=114.10 Aligned_cols=251 Identities=16% Similarity=0.198 Sum_probs=162.8
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCcEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLF 88 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~ 88 (326)
..+..++|++.-.-++++..|-+||+|+.+. .+...++. -+..|.|++|-|.+ ..|+.|+..| |.+|..+......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 3467889999766788899999999999766 55545554 35579999999965 4677777766 7899765321110
Q ss_pred EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC-C
Q 020461 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-D 167 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d 167 (326)
. ..+.. ...-..+...+|| .+|+++.|++++..+++++- |
T Consensus 177 r-----~~~~~---------------------------------s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 177 R-----NIRMM---------------------------------STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred c-----ccccc---------------------------------cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 0 00000 0000122233455 68999999999999988765 6
Q ss_pred CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec-CCcceEEEEeeccceEEEEeCCCCCe
Q 020461 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA-RTLELIKTYVTERPVNAVTMSPLLDH 246 (326)
Q Consensus 168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~s~~~~~ 246 (326)
..|.|||..++..+.-... -.+.+.-+.|||||.+|.+++.|+..++|+. ++-...+-......+...+|+|+|+.
T Consensus 218 ssi~iWdpdtg~~~pL~~~---glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPK---GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF 294 (445)
T ss_pred ceEEEEcCCCCCccccccc---CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCE
Confidence 7899999998876543311 2356788999999999999999999999954 33333333344558899999999998
Q ss_pred eEEec-CCCcceeEeecccCceee-------eE-eecccceeeeccccc---cCcceeEEEECCCCceEEeecC
Q 020461 247 VVLGG-GQDASAVTTTDHRAGKFE-------AK-FFDKILQEEIGGVKG---HFGPINALAFNPDGKSFSSGGE 308 (326)
Q Consensus 247 ~~~~~-~~~~~~~~~~d~~~~~~~-------~~-~~~~~~~~~~~~~~~---h~~~v~~v~~s~d~~~lat~s~ 308 (326)
++.+. ++.......++.+...+. +. ..+.. ++....+ -.++..+++|.|.|.+||+-=.
T Consensus 295 LLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~---e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 295 LLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ---EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred EEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch---hhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 76553 333333333444433322 00 00100 0000111 2367899999999999997644
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.1e-14 Score=127.62 Aligned_cols=210 Identities=15% Similarity=0.115 Sum_probs=135.3
Q ss_pred CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC---CcEEEEEccCCcEEEEEecCCCcceeeeecCCeE
Q 020461 31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKL 107 (326)
Q Consensus 31 d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (326)
+..|.+||..... ...+..|...+..+.|+|||+.|+..+.+ ..|.+||+.+++.....
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~----------------- 244 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA----------------- 244 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------
Confidence 5789999975444 45667788889999999999999887754 36899998776432110
Q ss_pred EEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee-CCCcEEEE--ECCCCcccccc
Q 020461 108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIW--DTETGKLLKES 184 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~~w--d~~~~~~~~~~ 184 (326)
...++ .....|+|+++.|+.++ .+|.+.|| |+.+++.. .+
T Consensus 245 ---------------------------------~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~l 287 (429)
T PRK01742 245 ---------------------------------SFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS-QL 287 (429)
T ss_pred ---------------------------------cCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE-ee
Confidence 01111 12367999999887654 67776655 66555432 22
Q ss_pred ccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCc-ceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeec
Q 020461 185 DKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (326)
Q Consensus 185 ~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d 262 (326)
..+...+.+..|+|||+.|+..+ .++..++|++... .....+.... ....++|+++.+++.+.. . +..+|
T Consensus 288 ---t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~-~--i~~~D 359 (429)
T PRK01742 288 ---TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGD-N--VVKQD 359 (429)
T ss_pred ---ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCC-C--EEEEE
Confidence 23555678899999999877655 5788888876532 2222222221 356799999988776542 2 22233
Q ss_pred ccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
...+... .+ ...+ ....++|+|||++|+.++.+|.+++|.+
T Consensus 360 l~~g~~~----------~l--t~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 360 LTSGSTE----------VL--SSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCCCCeE----------Ee--cCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 3222211 00 0111 2356889999999999999999988765
No 193
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.66 E-value=3.2e-15 Score=127.57 Aligned_cols=187 Identities=17% Similarity=0.199 Sum_probs=134.6
Q ss_pred EccCCCEEEe--ecCCCCeEEEecCCCCeee--eccC--cccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461 18 YNKDGDLLFS--CAKDHTPTVWFADNGERLG--TYRG--HNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 18 ~s~~~~~l~s--~~~d~~v~iw~~~~~~~~~--~~~~--h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 90 (326)
|+-+..+++. .+..|.|-||++...-++- .+.+ ....|+.+.|.| |.+.|+.++.||.|++|.+..+....
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e-- 664 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE-- 664 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc--
Confidence 4455556554 5567899999987543321 2222 234689999998 67789999999999999987643210
Q ss_pred ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEEEEeeCCCc
Q 020461 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAI 169 (326)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~ 169 (326)
....+-..+..|...|+++.|+|.- ..|++++.|.+
T Consensus 665 -------------------------------------------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T 701 (1012)
T KOG1445|consen 665 -------------------------------------------NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST 701 (1012)
T ss_pred -------------------------------------------ccCCcceeeecccceEEEEEecchhhhHhhhhhccce
Confidence 0112334567788899999999975 57889999999
Q ss_pred EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce-EEEEee--ccceEEEEeCCCCCe
Q 020461 170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTYVT--ERPVNAVTMSPLLDH 246 (326)
Q Consensus 170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~--~~~~~~~~~s~~~~~ 246 (326)
|++||+.+++.... ..+|...|..++|||+|..++|.+.||+|++|+.++.+. +++-.. +....-+.|.-++..
T Consensus 702 i~lWDl~~~~~~~~---l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~ 778 (1012)
T KOG1445|consen 702 IELWDLANAKLYSR---LVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRI 778 (1012)
T ss_pred eeeeehhhhhhhhe---eccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcE
Confidence 99999998776543 468999999999999999999999999999999998653 332211 222334556666666
Q ss_pred eEEecC
Q 020461 247 VVLGGG 252 (326)
Q Consensus 247 ~~~~~~ 252 (326)
+++.|.
T Consensus 779 viv~Gf 784 (1012)
T KOG1445|consen 779 VIVVGF 784 (1012)
T ss_pred EEEecc
Confidence 665543
No 194
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.66 E-value=2.4e-15 Score=128.28 Aligned_cols=190 Identities=19% Similarity=0.265 Sum_probs=135.8
Q ss_pred CceeEEEEcc-CCCEEEeecCCCCeEEEecCCCC-------eeeeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEc
Q 020461 11 RPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGE-------RLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 11 ~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~-------~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~ 81 (326)
..|+.+.|+| |.++|+.++.||.|+||.+..+. ....+.+|...|.++.|+| ..+.|++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 4678999998 67799999999999999886542 2346788999999999998 4568999999999999999
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
.+++.. ..+.+|...|..++|+|+|+.+
T Consensus 708 ~~~~~~----------------------------------------------------~~l~gHtdqIf~~AWSpdGr~~ 735 (1012)
T KOG1445|consen 708 ANAKLY----------------------------------------------------SRLVGHTDQIFGIAWSPDGRRI 735 (1012)
T ss_pred hhhhhh----------------------------------------------------heeccCcCceeEEEECCCCcce
Confidence 876432 2346889999999999999999
Q ss_pred EEeeCCCcEEEEECCCCcc-ccccccccCcceeeEEEEEcCCCCeEEEEeCCC----eEEEeecCCcc--eEEEE--eec
Q 020461 162 ISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDK----SAKLWDARTLE--LIKTY--VTE 232 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg----~i~iwd~~~~~--~~~~~--~~~ 232 (326)
++.+.||+|++|..++++. +.+-..-.+ ..---+.|.-||.++++.+.|. .|.+||.++.. .+... ...
T Consensus 736 AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg--tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva 813 (1012)
T KOG1445|consen 736 ATVCKDGTLRVYEPRSREQPVYEGKGPVG--TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA 813 (1012)
T ss_pred eeeecCceEEEeCCCCCCCccccCCCCcc--CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc
Confidence 9999999999999887643 222221112 2223455667888888887764 58889877643 22221 111
Q ss_pred cceEEEEeCCCCCeeEEecCCC
Q 020461 233 RPVNAVTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 233 ~~~~~~~~s~~~~~~~~~~~~~ 254 (326)
..+-.-.+.++.+.++++|..|
T Consensus 814 ps~LvP~YD~Ds~~lfltGKGD 835 (1012)
T KOG1445|consen 814 PSPLVPHYDYDSNVLFLTGKGD 835 (1012)
T ss_pred CccccccccCCCceEEEecCCC
Confidence 1122223455666666665544
No 195
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=1.7e-15 Score=124.51 Aligned_cols=215 Identities=17% Similarity=0.240 Sum_probs=164.5
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF 92 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 92 (326)
.+.+.|+.+|.+|+.|+.-|-+--+|..++.+..++.- ...|..+.|-.+.+++|.+ ....+.+||=. |..+..+.-
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHClk~ 208 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCLKR 208 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeehhh
Confidence 47899999999999999999999999999988766643 4467778887777766655 44568899854 555555555
Q ss_pred CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEE
Q 020461 93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI 172 (326)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~ 172 (326)
...+..++|.|...+.+..++.-+ ....++ ..|+.+..+....+.+..+..+|-+..+-+|...|+|.+
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~-----L~Y~DV------S~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSl 277 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGF-----LKYQDV------STGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSL 277 (545)
T ss_pred cCchhhhcccchhheeeecccCCc-----eEEEee------chhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEe
Confidence 566777788877666655544321 111222 234455555566677888888999999999999999999
Q ss_pred EECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCC
Q 020461 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244 (326)
Q Consensus 173 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~ 244 (326)
|..++.+.+..+ ..|.++|.++++.++|.|++|.+.|..++|||+++...+.++..+.+...+++|.-+
T Consensus 278 WSP~skePLvKi---LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 278 WSPNSKEPLVKI---LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG 346 (545)
T ss_pred cCCCCcchHHHH---HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc
Confidence 999887776544 469999999999999999999999999999999999888888777778888887543
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.63 E-value=1.9e-12 Score=110.04 Aligned_cols=236 Identities=10% Similarity=0.109 Sum_probs=142.7
Q ss_pred CCceeEEEEccCCCEEEee-cCCCCeEEEecC-CCCe--eeeccCcccceEEEEEcCCCCeEEEEeC-CCcEEEEEccCC
Q 020461 10 ERPLTYLKYNKDGDLLFSC-AKDHTPTVWFAD-NGER--LGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVETG 84 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~-~~d~~v~iw~~~-~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~ 84 (326)
......++++|++++|+++ ..++.|.+|+.. ++.. +.... ..+....++|+|+++++++++. ++.|.+|++++.
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 3456789999999988665 468899999886 3432 22222 2234567899999999888874 889999999743
Q ss_pred c----EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCC--CceEEEeccCccceeEEEEecCC
Q 020461 85 A----QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG--GESVLILKGPQGRINRAVWGPLN 158 (326)
Q Consensus 85 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~ 158 (326)
. .+..+........+.+.++.+.+++.... ...+.++++........ ........ ......++|+|++
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~----~~~v~v~d~~~~g~l~~~~~~~~~~~~--g~~p~~~~~~pdg 186 (330)
T PRK11028 113 GIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK----EDRIRLFTLSDDGHLVAQEPAEVTTVE--GAGPRHMVFHPNQ 186 (330)
T ss_pred CCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC----CCEEEEEEECCCCcccccCCCceecCC--CCCCceEEECCCC
Confidence 2 22222222234455667666555443321 12333444322110000 00011111 2335678999999
Q ss_pred cEEEEeeC-CCcEEEEECCC--Ccc--cccccccc---CcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecCCcc----e
Q 020461 159 RTIISAGE-DAIVRIWDTET--GKL--LKESDKET---GHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLE----L 225 (326)
Q Consensus 159 ~~l~s~~~-d~~i~~wd~~~--~~~--~~~~~~~~---~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~~~~----~ 225 (326)
++++++.. +++|.+||++. ++. ...+.... .+......+.++|++++++++.. ++.|.+|+++... .
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~ 266 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF 266 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence 99887766 99999999973 322 21111110 11122346889999999998864 7899999986432 2
Q ss_pred EEEEeeccceEEEEeCCCCCeeEEecC
Q 020461 226 IKTYVTERPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 226 ~~~~~~~~~~~~~~~s~~~~~~~~~~~ 252 (326)
+...........+.++|+++.++++..
T Consensus 267 ~~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 267 EGHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred eEEEeccccCCceEECCCCCEEEEEEc
Confidence 333333345668899999999998764
No 197
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.63 E-value=7.9e-14 Score=108.07 Aligned_cols=155 Identities=20% Similarity=0.356 Sum_probs=106.2
Q ss_pred eEEEEccCCCEEEeecC---C-------CCeEEEecCC-CCeeeeccC-cccceEEEEEcCCCCeEEEE--eCCCcEEEE
Q 020461 14 TYLKYNKDGDLLFSCAK---D-------HTPTVWFADN-GERLGTYRG-HNGAVWCCDVSRDSMTLITG--SADQTAKLW 79 (326)
Q Consensus 14 ~~~~~s~~~~~l~s~~~---d-------~~v~iw~~~~-~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~--~~d~~i~~w 79 (326)
..+.|+|+|++|+.-.. | +...||.+.. +..+..+.- ..++|..++|+|+++.|+.. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45789999987665332 1 2344555422 223333332 34579999999999886554 356789999
Q ss_pred EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (326)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (326)
|++ ++.+..+ +...++.+.|+|+|+
T Consensus 89 d~~-~~~i~~~------------------------------------------------------~~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 89 DVK-GKKIFSF------------------------------------------------------GTQPRNTISWSPDGR 113 (194)
T ss_pred cCc-ccEeEee------------------------------------------------------cCCCceEEEECCCCC
Confidence 985 2222111 123456788999999
Q ss_pred EEEEeeCC---CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC------CCeEEEeecCCcceEEEE
Q 020461 160 TIISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLWDARTLELIKTY 229 (326)
Q Consensus 160 ~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~ 229 (326)
++++++.+ |.|.+||.++.+.+.... | ..++.++|+|||++|++++. |..++||+.. |+.+.+.
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFE----H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccc----c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 99988743 669999999877765442 3 34789999999999999874 7889999985 5555543
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.7e-13 Score=104.09 Aligned_cols=158 Identities=12% Similarity=0.173 Sum_probs=114.3
Q ss_pred ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe
Q 020461 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 91 (326)
.|+++...|..+-++.++.|+.+.-||+++|+...+++||+..|.++.--.....++||+.||++|+||.++++.+..+.
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 47899999988777777799999999999999999999999999999874444468899999999999999998876553
Q ss_pred cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC-ccceeEEEEecCCcEEEEeeCCCcE
Q 020461 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAGEDAIV 170 (326)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~d~~i 170 (326)
.-..... ++-| ..+|.+++.+. .++++|+ ...+
T Consensus 196 ~yk~~~~-------------------------------------------lRp~~g~wigala~~e--dWlvCGg-Gp~l 229 (325)
T KOG0649|consen 196 PYKNPNL-------------------------------------------LRPDWGKWIGALAVNE--DWLVCGG-GPKL 229 (325)
T ss_pred cccChhh-------------------------------------------cCcccCceeEEEeccC--ceEEecC-CCce
Confidence 2110000 0001 12344444433 3666655 4458
Q ss_pred EEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (326)
Q Consensus 171 ~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~ 221 (326)
.+|.+++.++...+. ..+.+..+.|..| .+++++....+.-|.+.
T Consensus 230 slwhLrsse~t~vfp----ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFP----IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred eEEeccCCCceEEEe----cccceeEeeeecc--eEEEeccccceeeeeec
Confidence 999999887765543 3355666776554 68888888888888764
No 199
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.62 E-value=1.1e-15 Score=133.93 Aligned_cols=213 Identities=24% Similarity=0.374 Sum_probs=149.9
Q ss_pred eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461 46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125 (326)
Q Consensus 46 ~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
..+.+|..+|.|..|...|.++++|+.|..+|||.+.++.+.
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-------------------------------------- 225 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-------------------------------------- 225 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh--------------------------------------
Confidence 345799999999999999999999999999999998765432
Q ss_pred eeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe
Q 020461 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH 205 (326)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 205 (326)
..++||.+.|+.++.+...-.+++++.|..|++|.+.++.++..+ .+|.+.|++++|+|-.
T Consensus 226 --------------As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvL---rghtgavtaiafsP~~-- 286 (1113)
T KOG0644|consen 226 --------------ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVL---RGHTGAVTAIAFSPRA-- 286 (1113)
T ss_pred --------------ccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHH---hccccceeeeccCccc--
Confidence 235688889999999888888999999999999999999887655 4899999999999964
Q ss_pred EEEEeCCCeEEEeecCCcceEEEEe------eccceEEEEeCCCCCeeEEecCC--------------CcceeEee---c
Q 020461 206 FLTGSLDKSAKLWDARTLELIKTYV------TERPVNAVTMSPLLDHVVLGGGQ--------------DASAVTTT---D 262 (326)
Q Consensus 206 l~s~s~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~~s~~~~~~~~~~~~--------------~~~~~~~~---d 262 (326)
+.+.||++++||.+ .++..... ....+..+.+-..+..+.++..+ +...+.+. |
T Consensus 287 --sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd 363 (1113)
T KOG0644|consen 287 --SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSD 363 (1113)
T ss_pred --cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccc
Confidence 78889999999988 11111110 00112222222222222211100 00000000 0
Q ss_pred c------cCceeeeEeecccceeeeccccccCcceeEEEECC-CCceEEeecCCCcEEEeecC
Q 020461 263 H------RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 263 ~------~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~lat~s~Dg~i~l~~~~ 318 (326)
. .........|+...+...+.+.+|...+..+.++| +.....+++.||...||+.=
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 0 01122345577777778888899999999999998 45566889999999999863
No 200
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2e-14 Score=119.00 Aligned_cols=290 Identities=20% Similarity=0.257 Sum_probs=188.5
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc-CcccceEEEEEcCC--CCeEEEEeCCCcEEEEEc
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRD--SMTLITGSADQTAKLWNV 81 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~--~~~l~s~~~d~~i~~wd~ 81 (326)
.|.+|.+.|..+.|...|..|+++|.|..|.+||...+..+..|. +|...|..-.|-|. .+.+++++.||.+++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 467899999999999999999999999999999999998877765 68888887778773 467999999999998766
Q ss_pred cCCcEE----EEEecCCCcceeeeecCCeEEEEE--cCccceeceeeeeeeeccCCCCCCCceEEEeccCcc---ceeEE
Q 020461 82 ETGAQL----FTFNFDSPARSVDFAVGDKLAVIT--TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG---RINRA 152 (326)
Q Consensus 82 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~ 152 (326)
...... ....+..++..+...++....+.+ .+..... .++..+. .......-+.+.. ..+.+
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~------~Dlr~~~---pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFH------IDLRQDV---PAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceee------eeeccCC---ccceeeeeccCCccceeeeeE
Confidence 432221 122345566555555544322221 1111100 0111111 0111222222333 45678
Q ss_pred EEecCCc-EEEEeeCCCcEEEEECCCCccc------ccccc---ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461 153 VWGPLNR-TIISAGEDAIVRIWDTETGKLL------KESDK---ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 153 ~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~------~~~~~---~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (326)
+.+|... .+++++.|..+++||.+.-... ..+.+ .......|++++++-++.-|++...|-.|+++....
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 8888765 8899999999999998643221 11100 012245699999999989999999999999995433
Q ss_pred cc------------eEEE-Ee---eccceEEEEe-CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccc
Q 020461 223 LE------------LIKT-YV---TERPVNAVTM-SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK 285 (326)
Q Consensus 223 ~~------------~~~~-~~---~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 285 (326)
+. .++. +. ....|.++.| -|-.+. +++|+ |..- +-+|+....+.+.-+.
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy-VvSGS-DCGh------------IFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY-VVSGS-DCGH------------IFIWDKKTGEIIRFME 433 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccce-EEecC-ccce------------EEEEecchhHHHHHhh
Confidence 21 2222 11 1123555554 344333 33433 3332 3456666666666666
Q ss_pred ccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 286 GHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 286 ~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
+-..-|+|+.-+|--..||+++-|..|+||-=
T Consensus 434 gDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 434 GDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cccceEeccCCCCCCchhhccCCccceeeecC
Confidence 66668999999999999999999999999964
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.62 E-value=1.3e-13 Score=120.98 Aligned_cols=230 Identities=18% Similarity=0.210 Sum_probs=151.8
Q ss_pred CCCeEEEecCCCC-eeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEE
Q 020461 31 DHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (326)
Q Consensus 31 d~~v~iw~~~~~~-~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (326)
++.+.+|++++.. ....+ .-..+|.++.|+|. ..+++.|..+|.|-+||++.+.... ...
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-------~s~---------- 282 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-------PSG---------- 282 (555)
T ss_pred CceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-------Ccc----------
Confidence 3478999998773 22333 33668999999995 4577888899999999997654310 000
Q ss_pred EEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC--cEEEEeeCCCcEEEEECCCCcccccccc
Q 020461 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--RTIISAGEDAIVRIWDTETGKLLKESDK 186 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 186 (326)
.......|..++..+.|..+. .-|++++.||.|..|+++.-....+...
T Consensus 283 -----------------------------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~ 333 (555)
T KOG1587|consen 283 -----------------------------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLL 333 (555)
T ss_pred -----------------------------cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcc
Confidence 001112455666667775543 3489999999999998765333211111
Q ss_pred c---------cCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCC---cc-----eEEE-EeeccceEEEEeCCCCCee
Q 020461 187 E---------TGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDART---LE-----LIKT-YVTERPVNAVTMSPLLDHV 247 (326)
Q Consensus 187 ~---------~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~---~~-----~~~~-~~~~~~~~~~~~s~~~~~~ 247 (326)
. ......++++.|.+ +...++.|+.+|.|.--+.+. .. .... ..+..++.++.++|.+..+
T Consensus 334 ~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~ 413 (555)
T KOG1587|consen 334 LESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKN 413 (555)
T ss_pred cccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccce
Confidence 0 11234578888876 456799999999988744332 22 1111 1345789999999999988
Q ss_pred EEecCCCcceeEeecccCceeeeEeeccc-ceeeeccccccCcceeEEEECCCCc-eEEeecCCCcEEEeecCCCc
Q 020461 248 VLGGGQDASAVTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~l~~~~~~~ 321 (326)
+++++++. +++|... ...++-.+..+...|++++|||... .||++..||.|.||++..+-
T Consensus 414 fls~gDW~--------------vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 414 FLSVGDWT--------------VRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred eeeeccce--------------eEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 88877543 3444443 2233333445667799999999765 68999999999999987653
No 202
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=2.6e-12 Score=101.32 Aligned_cols=245 Identities=16% Similarity=0.240 Sum_probs=154.0
Q ss_pred CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC-CcEEEEEecC-CCcceeeeecCC-eEE
Q 020461 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQLFTFNFD-SPARSVDFAVGD-KLA 108 (326)
Q Consensus 32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~-~~~~~~~~~~~~-~~~ 108 (326)
..|.|||=....++.++ ....+|.++.+.++ .++.. .+++|.+|...+ .+.+..+.-. .|..-+.+.+.. +.+
T Consensus 75 NkviIWDD~k~~~i~el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIEL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 57889996666677666 35789999998765 45444 456899999874 4555554432 233333343322 222
Q ss_pred EEEcC-ccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCc-EEEEECCCCcccccccc
Q 020461 109 VITTD-PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI-VRIWDTETGKLLKESDK 186 (326)
Q Consensus 109 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~ 186 (326)
++.+. .. +.+.+..++.... .....+..|.+.|.+++.+.+|..+||+|..|+ |||||..+|+.+.++..
T Consensus 151 LafPg~k~----GqvQi~dL~~~~~----~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 151 LAFPGFKT----GQVQIVDLASTKP----NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred EEcCCCcc----ceEEEEEhhhcCc----CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 22221 11 2222333322211 134677899999999999999999999999997 88999999999988876
Q ss_pred ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCc
Q 020461 187 ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG 266 (326)
Q Consensus 187 ~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~ 266 (326)
... ...+.+++|||+..+|+++|..|++.|+.++....... ...+..+- + +++
T Consensus 223 G~d-~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~-----~~SSl~~~---~-~~l----------------- 275 (346)
T KOG2111|consen 223 GVD-RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTED-----ESSSLSFK---R-LVL----------------- 275 (346)
T ss_pred CCc-hheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcc-----cccccccc---c-ccc-----------------
Confidence 544 47799999999999999999999999998875332211 00010000 0 000
Q ss_pred eeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 267 KFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.++++. +..+..++--.++..-++|-.+.+.++..+.||.-+=+.|+++
T Consensus 276 ---pky~~S--~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 276 ---PKYFSS--EWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred ---chhccc--ceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence 000000 0001111112346677888777677777788888877777776
No 203
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.61 E-value=7.3e-14 Score=108.63 Aligned_cols=200 Identities=18% Similarity=0.236 Sum_probs=129.8
Q ss_pred ecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCCCe---eeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEcc
Q 020461 8 GHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGER---LGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE 82 (326)
Q Consensus 8 ~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~---~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~ 82 (326)
.+.+++++..|+. +.++|.++|-|.+..|||++++.. ...+-+|..+|..++|...+ +.|++.|.||.+|++|++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 3557888889986 677999999999999999998733 45677999999999998865 479999999999999998
Q ss_pred CCcEEEEE-ecCC---CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461 83 TGAQLFTF-NFDS---PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (326)
Q Consensus 83 ~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (326)
.-+....+ ..+. +..-+.+...+.-..+. +..-...+.+.++. ....++..+++|.+.|+.++|.|..
T Consensus 228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymAT---f~~dS~~V~iLDiR-----~P~tpva~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMAT---FAMDSNKVVILDIR-----VPCTPVARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred ccccceEEecCCCCCCcceeeccCcCCchHHhh---hhcCCceEEEEEec-----CCCcceehhhcCcccccceEecCCC
Confidence 65433222 2111 22222332222111000 00001111111221 1235677889999999999999976
Q ss_pred -cEEEEeeCCCcEEEEECCCCcc--ccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEE
Q 020461 159 -RTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAK 216 (326)
Q Consensus 159 -~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~ 216 (326)
..|+|+|+|..+.+||+.+... ...-.......++|..+.|++. +..++.+. ++.+.
T Consensus 300 ~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~kkle 360 (364)
T KOG0290|consen 300 SSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GKKLE 360 (364)
T ss_pred CceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-cCeee
Confidence 5899999999999999975322 1111111224578999999965 44455444 34443
No 204
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3.6e-13 Score=113.89 Aligned_cols=278 Identities=18% Similarity=0.224 Sum_probs=175.8
Q ss_pred ecCCceeEEEEccCCCEE-EeecCCCCeEEEecCCCCeeeeccCccc--ceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461 8 GHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNG--AVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l-~s~~~d~~v~iw~~~~~~~~~~~~~h~~--~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 84 (326)
.|....+.+..+|||+|+ ++|----.|++||+.+-.+ .|.-|.. .|...-++.|=...+--..|.+|.+..-- |
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-G 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhc-C
Confidence 356677899999999975 5566778999999876543 4555543 35545455553334444567777654321 1
Q ss_pred cEEEEEecCCCcceeeee-cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 85 AQLFTFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
.-+....+...+.+.++ +...+.+++.... +.++.- ..|.-+..++...+.++++..++-..+|++
T Consensus 126 -~hy~~RIP~~GRDm~y~~~scDly~~gsg~e--------vYRlNL----EqGrfL~P~~~~~~~lN~v~in~~hgLla~ 192 (703)
T KOG2321|consen 126 -RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSE--------VYRLNL----EQGRFLNPFETDSGELNVVSINEEHGLLAC 192 (703)
T ss_pred -eeeeeecCcCCccccccCCCccEEEeecCcc--------eEEEEc----cccccccccccccccceeeeecCccceEEe
Confidence 11122222333333333 2222222222211 111110 123333444555678999999999999999
Q ss_pred eeCCCcEEEEECCCCccccccccc---cCcce-----eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee--cc
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKE---TGHKK-----TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ER 233 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~---~~h~~-----~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~ 233 (326)
|+.+|.|..||.++...+..+... ..|.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-.+ +.
T Consensus 193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYEL 272 (703)
T ss_pred cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcc
Confidence 999999999999987766554321 12333 499999999999999999999999999998877655443 35
Q ss_pred ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461 234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 313 (326)
Q Consensus 234 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~ 313 (326)
++..+.|.+.+.. ..+.++|.+. +++|+...++....+.. ...++.+++-|++.++.++-+++.+.
T Consensus 273 pi~~l~~~~~~~q---------~~v~S~Dk~~----~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~ 338 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQ---------NKVVSMDKRI----LKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMH 338 (703)
T ss_pred ceeeecccccCCC---------ceEEecchHH----hhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcce
Confidence 6777777665222 1122334332 46777777666554433 34599999999999999999888775
Q ss_pred Ee
Q 020461 314 LH 315 (326)
Q Consensus 314 l~ 315 (326)
-+
T Consensus 339 ~y 340 (703)
T KOG2321|consen 339 TY 340 (703)
T ss_pred eE
Confidence 54
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=2.1e-12 Score=103.74 Aligned_cols=197 Identities=11% Similarity=0.150 Sum_probs=135.1
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF 92 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 92 (326)
|.-+-||.+---|++..+-..+++.+.+.+..+-.+ -...+|.++.+. .++|+.+-.+. |.+||+++.+.+..+..
T Consensus 49 IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~-~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t 124 (391)
T KOG2110|consen 49 IVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI-FFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIET 124 (391)
T ss_pred EEEeecccceeEEEecCCCceEEEEEcccCceEEEE-ecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhc
Confidence 444556654333333323334777777666544333 235678888775 45777777765 99999999998877654
Q ss_pred C--CCcceeeeecCC--eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC
Q 020461 93 D--SPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (326)
Q Consensus 93 ~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~ 168 (326)
. .+...+.+++.. ...+..... ....+.+++. ....++..+..|.+.+.+++|+|+|.+|||+++.|
T Consensus 125 ~~~n~~gl~AlS~n~~n~ylAyp~s~---t~GdV~l~d~------~nl~~v~~I~aH~~~lAalafs~~G~llATASeKG 195 (391)
T KOG2110|consen 125 TPPNPKGLCALSPNNANCYLAYPGST---TSGDVVLFDT------INLQPVNTINAHKGPLAALAFSPDGTLLATASEKG 195 (391)
T ss_pred cCCCccceEeeccCCCCceEEecCCC---CCceEEEEEc------ccceeeeEEEecCCceeEEEECCCCCEEEEeccCc
Confidence 3 333344444332 233332111 0122222222 22356778889999999999999999999999999
Q ss_pred c-EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc
Q 020461 169 I-VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (326)
Q Consensus 169 ~-i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~ 223 (326)
+ ||++.+.+|+.+.+++...- ...|.+++|++++++|++.|..++|+++.+...
T Consensus 196 TVIRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 196 TVIRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred eEEEEEEcCCccEeeeeeCCce-eeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 8 78999999999888776443 567899999999999999999999999998754
No 206
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.60 E-value=8.9e-15 Score=112.14 Aligned_cols=159 Identities=16% Similarity=0.250 Sum_probs=116.5
Q ss_pred CceeEEEEcc-CCC--EEEeecCCCCeEEEecCCCCee----------eeccCcccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461 11 RPLTYLKYNK-DGD--LLFSCAKDHTPTVWFADNGERL----------GTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77 (326)
Q Consensus 11 ~~i~~~~~s~-~~~--~l~s~~~d~~v~iw~~~~~~~~----------~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~ 77 (326)
+.+.|..+.. .++ +|++|-.+|.|.+||+.++..+ .....|.++|.++++.+....=++++.+..+-
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 3455554332 233 5677889999999999998443 34467999999999987655567888888888
Q ss_pred EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
+|+++........ . .. .+-.+-.+.-+.+-||
T Consensus 231 ~~Sl~~s~gslq~--~--------------------------~e--------------------~~lknpGv~gvrIRpD 262 (323)
T KOG0322|consen 231 MYSLNHSTGSLQI--R--------------------------KE--------------------ITLKNPGVSGVRIRPD 262 (323)
T ss_pred eeeeccccCcccc--c--------------------------ce--------------------EEecCCCccceEEccC
Confidence 8887532110000 0 00 0001123445667899
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~ 220 (326)
++.++|+|+|++||+|.-++...+..+ .-|+..|.+++|+|+...+|+++.|+.|-+|++
T Consensus 263 ~KIlATAGWD~RiRVyswrtl~pLAVL---kyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 263 GKILATAGWDHRIRVYSWRTLNPLAVL---KYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CcEEeecccCCcEEEEEeccCCchhhh---hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999988776554 358999999999999999999999999999986
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=2.2e-14 Score=120.17 Aligned_cols=224 Identities=20% Similarity=0.309 Sum_probs=141.4
Q ss_pred CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeee----e-----cCCeEEEEEcCccceece
Q 020461 50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF----A-----VGDKLAVITTDPFMELNS 120 (326)
Q Consensus 50 ~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~ 120 (326)
.|...|.|+.|+.....+.+++.+..++-||+.+.........+..+....+ + -.+.+++++.++-+.+-+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 4666777899988777776666665555566654332111111100000000 0 012333333332211110
Q ss_pred eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccc--------------
Q 020461 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-------------- 186 (326)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-------------- 186 (326)
..+.--.....|.+.+.+-.|+|+|.-|+++|+||.|++|... |-+..++..
T Consensus 92 -------------k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S 157 (737)
T KOG1524|consen 92 -------------KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNS 157 (737)
T ss_pred -------------ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCC
Confidence 0112223456788999999999999999999999999999742 211111100
Q ss_pred ------------------------ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461 187 ------------------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242 (326)
Q Consensus 187 ------------------------~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~ 242 (326)
=.+|.+.|.++.|++....+++|++|-..++||-....+..+-.++.++.+++|.|
T Consensus 158 ~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 158 NSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNP 237 (737)
T ss_pred CceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeecc
Confidence 02588999999999999999999999999999987555555555678999999999
Q ss_pred CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE
Q 020461 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l 314 (326)
+ ..++++.- . -.++ . +...+-|..++|||||..++.|...|.+-+
T Consensus 238 d-~~~~v~S~-n--------------t~R~-~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 238 E-KDYLLWSY-N--------------TARF-S----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred c-cceeeeee-e--------------eeee-c----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 8 33333211 0 0111 1 123467999999999999999999998866
No 208
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=7.6e-13 Score=115.83 Aligned_cols=224 Identities=12% Similarity=0.098 Sum_probs=137.5
Q ss_pred eeeeecCCceeEEEEccCCCEEEeec---CCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEE-eCCCc--EE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCA---KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQT--AK 77 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~---~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~-~~d~~--i~ 77 (326)
..+..+...+...+|||||+.|+..+ .+..+.+|++.+++... +....+.+..+.|+|||+.|+.. +.++. |.
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 34455667789999999999888654 34578899998875432 22223334568999999977654 44553 67
Q ss_pred EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
+||+++++..... .+...+....|+|+
T Consensus 271 ~~d~~tg~~~~lt-----------------------------------------------------~~~~~~~~~~wSPD 297 (429)
T PRK03629 271 VMDLASGQIRQVT-----------------------------------------------------DGRSNNTEPTWFPD 297 (429)
T ss_pred EEECCCCCEEEcc-----------------------------------------------------CCCCCcCceEECCC
Confidence 7787665432110 01122345689999
Q ss_pred CcEEEEeeCC-CcEEEE--ECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC---CeEEEeecCCcceEEEEee
Q 020461 158 NRTIISAGED-AIVRIW--DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYVT 231 (326)
Q Consensus 158 ~~~l~s~~~d-~~i~~w--d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~ 231 (326)
++.|+..+.+ +...+| |+.+++.. .+. .+........|+|||++++..+.+ ..|.+||+.+++. ..+..
T Consensus 298 G~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt---~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~ 372 (429)
T PRK03629 298 SQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTD 372 (429)
T ss_pred CCEEEEEeCCCCCceEEEEECCCCCeE-Eee---cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCC
Confidence 9988766654 444555 66655432 221 122335578899999998876653 3588899988764 33332
Q ss_pred ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC
Q 020461 232 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298 (326)
Q Consensus 232 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~ 298 (326)
........|+|++..++.++...... .+..++. .+.....+.+|.+.+...+|+|
T Consensus 373 ~~~~~~p~~SpDG~~i~~~s~~~~~~-----------~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 373 TFLDETPSIAPNGTMVIYSSSQGMGS-----------VLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCCCceECCCCCEEEEEEcCCCce-----------EEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 22334678999999887765433211 1222222 1222233456777888899987
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.60 E-value=6.4e-14 Score=120.43 Aligned_cols=231 Identities=18% Similarity=0.250 Sum_probs=155.9
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeec-cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
+..|+||++-|+|++|+.||++++||+.|..|.+|+-+-. ..+ ..|...|.|+.|+|-.+.|+|++... .-+|..
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~ 121 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GILKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSP 121 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEeccccc---ceeeeccCCeeeEeecCchHHHhhhcchhh-ccccCh
Confidence 4678999999999999999999999999999999975422 222 26999999999999999999999754 468876
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC---
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--- 158 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 158 (326)
.... +........+.++.|..++.+.+.+-. ++.+.+.. ........+...-|.+++|.+++|+|..
T Consensus 122 ~qK~-V~K~kss~R~~~CsWtnDGqylalG~~-----nGTIsiRN----k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G 191 (1081)
T KOG1538|consen 122 EQKS-VSKHKSSSRIICCSWTNDGQYLALGMF-----NGTISIRN----KNGEEKVKIERPGGSNSPIWSICWNPSSGEG 191 (1081)
T ss_pred hhhh-HHhhhhheeEEEeeecCCCcEEEEecc-----CceEEeec----CCCCcceEEeCCCCCCCCceEEEecCCCCCC
Confidence 5422 222222344566777766665554321 22222221 1111111122223678899999999964
Q ss_pred --cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccce
Q 020461 159 --RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPV 235 (326)
Q Consensus 159 --~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~ 235 (326)
..++...+..++..+.+. |+.+..-. .-.-...|+.+.++|.+++.|+.|+.++++-.+ |-.+.++. ....+
T Consensus 192 ~~di~aV~DW~qTLSFy~Ls-G~~Igk~r---~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WI 266 (1081)
T KOG1538|consen 192 RNDILAVADWGQTLSFYQLS-GKQIGKDR---ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWI 266 (1081)
T ss_pred ccceEEEEeccceeEEEEec-ceeecccc---cCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccccceeE
Confidence 367777777777777664 33332111 112345789999999999999999999999654 33333332 34578
Q ss_pred EEEEeCCCCCeeEEecC
Q 020461 236 NAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 236 ~~~~~s~~~~~~~~~~~ 252 (326)
..++..|++..++++--
T Consensus 267 WtV~~~PNsQ~v~~GCq 283 (1081)
T KOG1538|consen 267 WTVQAKPNSQYVVVGCQ 283 (1081)
T ss_pred EEEEEccCCceEEEEEc
Confidence 89999999888776543
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=6.3e-13 Score=116.78 Aligned_cols=191 Identities=14% Similarity=0.070 Sum_probs=124.4
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecC---CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCC--cE
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQ--TA 76 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~---d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~--~i 76 (326)
|..+..|...+...+|+|||+.|+.++. +..|++|++.+++... +..+.+...+++|+|||+.++ +.+.++ .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 4456667778899999999999888763 3469999998887543 333444556789999998664 556665 47
Q ss_pred EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
.+||+.+++.... ..+........|+|
T Consensus 275 y~~d~~~g~~~~l-----------------------------------------------------t~~~~~~~~~~~sp 301 (433)
T PRK04922 275 YVMDLGSRQLTRL-----------------------------------------------------TNHFGIDTEPTWAP 301 (433)
T ss_pred EEEECCCCCeEEC-----------------------------------------------------ccCCCCccceEECC
Confidence 7777766543210 00111123457999
Q ss_pred CCcEEEEeeC-CCc--EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC---eEEEeecCCcceEEEEe
Q 020461 157 LNRTIISAGE-DAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYV 230 (326)
Q Consensus 157 ~~~~l~s~~~-d~~--i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~ 230 (326)
+++.|+..++ ++. |.++|+.+++... +. .+.......+|+|||++++..+.++ .|.+||+.+++.. .+.
T Consensus 302 DG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt---~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt 376 (433)
T PRK04922 302 DGKSIYFTSDRGGRPQIYRVAASGGSAER-LT---FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT 376 (433)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEE-ee---cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC
Confidence 9998876654 444 6666766654322 21 1122344689999999998765443 6999999887654 333
Q ss_pred eccceEEEEeCCCCCeeEEecC
Q 020461 231 TERPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 231 ~~~~~~~~~~s~~~~~~~~~~~ 252 (326)
.........|+|+++.++....
T Consensus 377 ~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 377 PGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CCCCCCCceECCCCCEEEEEEe
Confidence 3323445689999998776543
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=9.3e-12 Score=106.04 Aligned_cols=281 Identities=18% Similarity=0.149 Sum_probs=153.0
Q ss_pred eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEEEccCCcEEEEEec
Q 020461 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLFTFNF 92 (326)
Q Consensus 14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~ 92 (326)
..+.|+|||+++++++.|+.|.++|+.+.+.+.+++.-.. -.++++++||++++++. .++.+.++|.++.+.+..+..
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 4578999999999999999999999999999998876443 46799999999988776 689999999999888776642
Q ss_pred CC--------CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE-
Q 020461 93 DS--------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS- 163 (326)
Q Consensus 93 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 163 (326)
.. ....+..++.....++.... .-+++.+.... . ..................|+|++++++.
T Consensus 119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd------~~~I~vVdy~d--~-~~~~~~~i~~g~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVASPGRPEFVVNLKD------TGEIWVVDYSD--P-KNLKVTTIKVGRFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp -EE-TTTS---EEEEEE-SSSSEEEEEETT------TTEEEEEETTT--S-SCEEEEEEE--TTEEEEEE-TTSSEEEEE
T ss_pred ccccccccCCCceeEEecCCCCEEEEEEcc------CCeEEEEEecc--c-cccceeeecccccccccccCcccceeeec
Confidence 21 11222223333322221110 11122221110 0 1111111122334567889999998765
Q ss_pred eeCCCcEEEEECCCCcccccccc-ccCcceeeEEE---------EEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc
Q 020461 164 AGEDAIVRIWDTETGKLLKESDK-ETGHKKTITSL---------AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~-~~~h~~~v~~v---------~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 233 (326)
...+..|-++|.++++....+.. ...|......+ .....+...++.-....+.+||.++.+.++++....
T Consensus 190 ~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G 269 (369)
T PF02239_consen 190 ANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG 269 (369)
T ss_dssp EGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS
T ss_pred ccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC
Confidence 45677899999988776543321 11232222222 112233344344444567789999999999998776
Q ss_pred ceEEEEeCCCCCeeEEec--CCCcceeEeecccCceeeeEeecccceeeecccccc-CcceeEEEECCCCceEEeecCC-
Q 020461 234 PVNAVTMSPLLDHVVLGG--GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINALAFNPDGKSFSSGGED- 309 (326)
Q Consensus 234 ~~~~~~~s~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s~d~~~lat~s~D- 309 (326)
..-.+.-+|++.++++.. +.+...+...|.+. .+.+..+... ...+..+.|++||+++-.+..+
T Consensus 270 ~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~t------------l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 270 GGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT------------LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp SS--EE--TT-SEEEEE-TT-SSHT-EEEEECCG------------TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred CcceeecCCCCccEEeeccCCCCCceEEEEECcC------------cceeEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence 668888899999998861 12233344444332 2222222211 1248899999999976555443
Q ss_pred -CcEEEee
Q 020461 310 -GYVRLHH 316 (326)
Q Consensus 310 -g~i~l~~ 316 (326)
+.|.+++
T Consensus 338 ~~~i~v~D 345 (369)
T PF02239_consen 338 NGAIVVYD 345 (369)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 3588843
No 212
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.7e-13 Score=108.93 Aligned_cols=161 Identities=15% Similarity=0.198 Sum_probs=120.1
Q ss_pred eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461 45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124 (326)
Q Consensus 45 ~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
.+.+.+|.+.|+++.|+.++++|++|+.|..+++|++...-...
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k------------------------------------ 92 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK------------------------------------ 92 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc------------------------------------
Confidence 34467999999999999999999999999999999986421000
Q ss_pred eeeccCCCCCCCceEEEec-cCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC
Q 020461 125 KRIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG 203 (326)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~ 203 (326)
..+++.... .|.+.|.++.|+.-+..+++|+.+++|.+-|+++.+.+..... ....+.|..+..+|..
T Consensus 93 ----------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~-~~~~~~VY~m~~~P~D 161 (609)
T KOG4227|consen 93 ----------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANE-NNNRGDVYHMDQHPTD 161 (609)
T ss_pred ----------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecc-cCcccceeecccCCCC
Confidence 001122222 3447899999999889999999999999999998877655432 2345689999999999
Q ss_pred CeEEEEeCCCeEEEeecCCcc-eEEEEe---eccceEEEEeCCCCCeeEEecC
Q 020461 204 SHFLTGSLDKSAKLWDARTLE-LIKTYV---TERPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 204 ~~l~s~s~dg~i~iwd~~~~~-~~~~~~---~~~~~~~~~~s~~~~~~~~~~~ 252 (326)
+.|++.+.++.|.+||.+... ...-+. .+.....+-|+|....+++...
T Consensus 162 N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~ 214 (609)
T KOG4227|consen 162 NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS 214 (609)
T ss_pred ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence 999999999999999988643 222221 2344567778888877766543
No 213
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1e-12 Score=115.15 Aligned_cols=191 Identities=16% Similarity=0.101 Sum_probs=124.3
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCC---CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCcEEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLW 79 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d---~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~i~~w 79 (326)
..+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+||++.|+ +.+.++..++|
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 3445677788899999999998876643 458999999887543 333345567889999998775 66778887777
Q ss_pred EccC--CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 80 NVET--GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 80 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
.++. ++. . .+..+.+......|+|+
T Consensus 268 ~~d~~~~~~-~----------------------------------------------------~lt~~~~~~~~~~wSpD 294 (427)
T PRK02889 268 TVNADGSGL-R----------------------------------------------------RLTQSSGIDTEPFFSPD 294 (427)
T ss_pred EEECCCCCc-E----------------------------------------------------ECCCCCCCCcCeEEcCC
Confidence 6532 110 0 00111122334679999
Q ss_pred CcEEEEeeC-CCcEEEEEC--CCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC---eEEEeecCCcceEEEEee
Q 020461 158 NRTIISAGE-DAIVRIWDT--ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYVT 231 (326)
Q Consensus 158 ~~~l~s~~~-d~~i~~wd~--~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~ 231 (326)
|+.|+..++ ++...+|.+ .+++.. .+.. +.......+|+|||++++..+.++ .|.+||+.+++.. .+..
T Consensus 295 G~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~---~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~ 369 (427)
T PRK02889 295 GRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTF---TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTD 369 (427)
T ss_pred CCEEEEEecCCCCcEEEEEECCCCceE-EEec---CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccC
Confidence 998876554 566677755 333321 1111 112234578999999998777654 6999999887653 3333
Q ss_pred ccceEEEEeCCCCCeeEEecCC
Q 020461 232 ERPVNAVTMSPLLDHVVLGGGQ 253 (326)
Q Consensus 232 ~~~~~~~~~s~~~~~~~~~~~~ 253 (326)
........|+|+++.++.+...
T Consensus 370 ~~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 370 TTRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred CCCccCceECCCCCEEEEEEec
Confidence 3334677899999988876543
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=4.4e-13 Score=112.50 Aligned_cols=197 Identities=19% Similarity=0.236 Sum_probs=124.1
Q ss_pred cCCCEEEeecCCCCeEEEecCCCCeeeecc--C--cccceEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcEEEEEecCC
Q 020461 20 KDGDLLFSCAKDHTPTVWFADNGERLGTYR--G--HNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDS 94 (326)
Q Consensus 20 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~--~--h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 94 (326)
|++--|..+=.-|.|.+.+....+..+.+. . .+..|+|+.|-|.+. .++.+-.+|.+-+||..-. +... .
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~---~~~t--~ 257 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV---CGAT--A 257 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc---ccCC--C
Confidence 445455556666777776654422211121 1 235799999988544 5666778898888886210 0000 0
Q ss_pred CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEE
Q 020461 95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174 (326)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd 174 (326)
+ ....+..++.+.+..... ...+ .++..+.-..+.|+..+|+|+|++|++.+.||.+||+|
T Consensus 258 p-~~~~~k~~~~f~i~t~ks-----------k~~r-------NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~ 318 (636)
T KOG2394|consen 258 P-SYQALKDGDQFAILTSKS-----------KKTR-------NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFD 318 (636)
T ss_pred C-cccccCCCCeeEEeeeec-----------cccC-------CccceeEeccccccceeEcCCCceEEEEecCceEEEee
Confidence 0 000111122222211000 0000 12223333345889999999999999999999999999
Q ss_pred CCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCC
Q 020461 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPL 243 (326)
Q Consensus 175 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~ 243 (326)
..+.+++..+.. -=+...|++|||||+++++|++|..|.+|.+...+.+..-. +...|+.++|.|.
T Consensus 319 fdt~eLlg~mkS---YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpy 385 (636)
T KOG2394|consen 319 FDTQELLGVMKS---YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPY 385 (636)
T ss_pred ccHHHHHHHHHh---hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccc
Confidence 988766543321 12468999999999999999999999999998877766543 4567999999874
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=4.3e-12 Score=111.68 Aligned_cols=217 Identities=15% Similarity=0.097 Sum_probs=133.4
Q ss_pred CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC---CCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEE
Q 020461 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (326)
Q Consensus 32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (326)
..|.+||.. +.....+..|...+...+|+|||+.|+..+. +..|.+||+.+++.....
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~------------------ 242 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG------------------ 242 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee------------------
Confidence 367777864 4444556678889999999999998877653 467889998776532110
Q ss_pred EEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCCc--EEEEECCCCccccccc
Q 020461 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAI--VRIWDTETGKLLKESD 185 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~~~~~~~~ 185 (326)
.+.+.+....|+|+|+.|+ +.+.++. |.+||+.+++... +
T Consensus 243 -----------------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-L- 285 (435)
T PRK05137 243 -----------------------------------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-L- 285 (435)
T ss_pred -----------------------------------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-c-
Confidence 0112234467999998765 5555555 7777888765432 2
Q ss_pred cccCcceeeEEEEEcCCCCeEEEEeC-CC--eEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeec
Q 020461 186 KETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (326)
Q Consensus 186 ~~~~h~~~v~~v~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d 262 (326)
..+........|+|||..++..+. +| .|+++|+.+++..+-...........|+|+++.++......+
T Consensus 286 --t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~------- 356 (435)
T PRK05137 286 --TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG------- 356 (435)
T ss_pred --cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCC-------
Confidence 234445677899999999887764 33 688889876654332222334556789999998876543221
Q ss_pred ccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC-Cc---EEEeecCC
Q 020461 263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED-GY---VRLHHFDP 319 (326)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D-g~---i~l~~~~~ 319 (326)
.+.+.+++...... ..+. ....+....|+|||++|+..+.+ +. -+||.++.
T Consensus 357 ----~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 357 ----QFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred ----ceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 11233333211111 1111 11246789999999998765543 22 35555543
No 216
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.7e-12 Score=105.89 Aligned_cols=155 Identities=18% Similarity=0.258 Sum_probs=104.9
Q ss_pred eEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461 150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (326)
Q Consensus 150 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (326)
..++++++|..+++++.||++|+|+..+...+. ....|...|.++.|+|||+.|++-+.| ..++|+.+++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l---~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL---EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh---hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 568899999999999999999999966544333 234688999999999999999999999 8999999999766665
Q ss_pred eec---cceEEEEeCCCC--CeeEEec-CCCcceeEeecccCceeeeEeecccceee-eccccccCcceeEEEECCCCce
Q 020461 230 VTE---RPVNAVTMSPLL--DHVVLGG-GQDASAVTTTDHRAGKFEAKFFDKILQEE-IGGVKGHFGPINALAFNPDGKS 302 (326)
Q Consensus 230 ~~~---~~~~~~~~s~~~--~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~v~~s~d~~~ 302 (326)
.+. .....+-|+.+. +.+.+++ -.+... ...+++..|+....-+ ...+.. ...|.+++.|+||++
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~-------v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGG-------VRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKF 295 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCc-------eeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcE
Confidence 421 123344444433 2222221 111111 1223444454421111 111222 246899999999999
Q ss_pred EEeecCCCcEEEee
Q 020461 303 FSSGGEDGYVRLHH 316 (326)
Q Consensus 303 lat~s~Dg~i~l~~ 316 (326)
+|.|+.||.|-|+.
T Consensus 296 ~AlGT~dGsVai~~ 309 (398)
T KOG0771|consen 296 LALGTMDGSVAIYD 309 (398)
T ss_pred EEEeccCCcEEEEE
Confidence 99999999998843
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=9.7e-12 Score=108.89 Aligned_cols=215 Identities=10% Similarity=-0.020 Sum_probs=129.1
Q ss_pred CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC---CCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEE
Q 020461 33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109 (326)
Q Consensus 33 ~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (326)
.+.+||....+. ..+..+...+...+|+|||+.|+..+. +..+.+||+.+++......
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~------------------ 240 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS------------------ 240 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC------------------
Confidence 677778765443 334445678999999999998876542 3457778877654321100
Q ss_pred EEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe-eCCC--cEEEEECCCCcccccccc
Q 020461 110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDA--IVRIWDTETGKLLKESDK 186 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~d~--~i~~wd~~~~~~~~~~~~ 186 (326)
.+++ .....|+|+|+.|+.. +.++ .|.+||+.+++... +.
T Consensus 241 --------------------------------~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt- 283 (429)
T PRK03629 241 --------------------------------FPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VT- 283 (429)
T ss_pred --------------------------------CCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-cc-
Confidence 0111 2235799999877754 4444 58899998776433 21
Q ss_pred ccCcceeeEEEEEcCCCCeEEEEeCC-Ce--EEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecc
Q 020461 187 ETGHKKTITSLAKAADGSHFLTGSLD-KS--AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 263 (326)
Q Consensus 187 ~~~h~~~v~~v~~s~~~~~l~s~s~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~ 263 (326)
.+...+....|+|||+.|+..+.+ +. |..+|+.+++..+-...........++|+++.++.....++.
T Consensus 284 --~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~------- 354 (429)
T PRK03629 284 --DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ------- 354 (429)
T ss_pred --CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCC-------
Confidence 233456788999999998877754 44 555577666543222222344568899999988776543321
Q ss_pred cCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCc---EEEeecC
Q 020461 264 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY---VRLHHFD 318 (326)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~---i~l~~~~ 318 (326)
..+..++...+.. ..+.. ........|+|||++|+.++.|+. +.+++++
T Consensus 355 ----~~I~~~dl~~g~~-~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 355 ----QHIAKQDLATGGV-QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred ----ceEEEEECCCCCe-EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 1233333222211 11111 112346789999999999998875 4555543
No 218
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=1.8e-12 Score=100.55 Aligned_cols=152 Identities=18% Similarity=0.328 Sum_probs=100.3
Q ss_pred EEEecCCcEEEEeeC----------CCcEEEEECCCC-ccccccccccCcceeeEEEEEcCCCCeEEE--EeCCCeEEEe
Q 020461 152 AVWGPLNRTIISAGE----------DAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLT--GSLDKSAKLW 218 (326)
Q Consensus 152 ~~~~~~~~~l~s~~~----------d~~i~~wd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s--~s~dg~i~iw 218 (326)
+.|+|.|..|+.-.. -+...+|.++.. .....+. ....++|.+++|+|+|..|+. |..++.|.+|
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~--l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE--LKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee--ccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 557777765543222 123455555322 2222221 223456999999999998754 4467899999
Q ss_pred ecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC
Q 020461 219 DARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298 (326)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~ 298 (326)
|++ ++.+.++. ....+.+.|+|.|+.+++++.... ...+.+|+....+.+.... | ..+..++|||
T Consensus 89 d~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~-----------~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsP 153 (194)
T PF08662_consen 89 DVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNL-----------NGDLEFWDVRKKKKISTFE-H-SDATDVEWSP 153 (194)
T ss_pred cCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCC-----------CcEEEEEECCCCEEeeccc-c-CcEEEEEEcC
Confidence 997 66666664 457889999999999988763221 0134556655555544432 3 3578999999
Q ss_pred CCceEEeecC------CCcEEEeecCCC
Q 020461 299 DGKSFSSGGE------DGYVRLHHFDPD 320 (326)
Q Consensus 299 d~~~lat~s~------Dg~i~l~~~~~~ 320 (326)
||++|+|++. |..++||++.=.
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEecCe
Confidence 9999998874 889999998644
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.53 E-value=6.3e-13 Score=104.80 Aligned_cols=162 Identities=19% Similarity=0.256 Sum_probs=123.7
Q ss_pred ccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc-c
Q 020461 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-E 224 (326)
Q Consensus 146 ~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~-~ 224 (326)
..+|++.+|+++...++.+-+...|.|+................|...|+.++|+|..+.|++++.|..-++|....+ +
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 467999999999999999999999999998766644333344578999999999999999999999999999998433 2
Q ss_pred eEEE---EeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc
Q 020461 225 LIKT---YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301 (326)
Q Consensus 225 ~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~ 301 (326)
-..+ +...+...++.|+|..+.++++++.....+..+.....- |-.. +--+.+.++|++++|+|++-
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW-----WVsK-----hikkPirStv~sldWhpnnV 159 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW-----WVSK-----HIKKPIRSTVTSLDWHPNNV 159 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce-----ehhh-----hhCCccccceeeeeccCCcc
Confidence 2222 245678999999999999998877655544444322111 0000 01134678899999999999
Q ss_pred eEEeecCCCcEEEeec
Q 020461 302 SFSSGGEDGYVRLHHF 317 (326)
Q Consensus 302 ~lat~s~Dg~i~l~~~ 317 (326)
+||+||.|+..|+|+.
T Consensus 160 LlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSA 175 (361)
T ss_pred eecccccCcceeEEEE
Confidence 9999999999999874
No 220
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1e-12 Score=104.47 Aligned_cols=193 Identities=17% Similarity=0.240 Sum_probs=131.3
Q ss_pred CeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (326)
Q Consensus 65 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (326)
..++++.+.|+|++||..+++.+..+..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~---------------------------------------------------- 68 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG---------------------------------------------------- 68 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecC----------------------------------------------------
Confidence 3577888899999999988765544432
Q ss_pred CccceeEEEEec--CCcEEEEeeCCCcEEEEECCCCccccccccccCcc-eeeEEEEEcCCCCeEEEEeC----CCeEEE
Q 020461 145 PQGRINRAVWGP--LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK-KTITSLAKAADGSHFLTGSL----DKSAKL 217 (326)
Q Consensus 145 ~~~~i~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~s~s~----dg~i~i 217 (326)
+...++.+.|.. ....+.+|+.||+|++||+++......+... .++ .+-++++..-.+..+++|+. |-.+.+
T Consensus 69 ~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~l 147 (376)
T KOG1188|consen 69 PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-QQSGTPFICLDLNCKKNIIACGTELTRSDASVVL 147 (376)
T ss_pred CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-CCCCCcceEeeccCcCCeEEeccccccCceEEEE
Confidence 222222333322 2346889999999999999976655443322 333 56677777667777888764 677999
Q ss_pred eecCCcce-EEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEE
Q 020461 218 WDARTLEL-IKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 294 (326)
Q Consensus 218 wd~~~~~~-~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 294 (326)
||+|+.+. +..+. +...|..+.|+|....++++|+.|+. +..+|.... .....+...-.|..-|.++
T Consensus 148 wDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~d---------~EeDaL~~viN~~sSI~~i 217 (376)
T KOG1188|consen 148 WDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKKD---------NEEDALLHVINHGSSIHLI 217 (376)
T ss_pred EEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCCC---------cchhhHHHhhcccceeeee
Confidence 99998665 66653 55689999999999999998887763 333332211 1112222334566679999
Q ss_pred EECCCC-ceEEeecCCCcEEEeecCCC
Q 020461 295 AFNPDG-KSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 295 ~~s~d~-~~lat~s~Dg~i~l~~~~~~ 320 (326)
.|..++ +.+.+-+.+++..+|.+...
T Consensus 218 gw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 218 GWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred eeecCCcceEEEEEccCceeEEEccCC
Confidence 998665 45888899999999988653
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=8.3e-14 Score=116.78 Aligned_cols=78 Identities=23% Similarity=0.414 Sum_probs=71.5
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
+..|...+|||||++||+.|.||.+||+|..+.+++..++..=+...|++|||||+++++|+.|.-|.||.+...+.+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 357889999999999999999999999999999998888888889999999999999999999999999998765543
No 222
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.52 E-value=2.1e-12 Score=102.88 Aligned_cols=200 Identities=20% Similarity=0.320 Sum_probs=140.7
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCC----CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~----~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
..+++++.+.++..+|+.+-.+|++.-+.+.. ...++....|...|..+-|+...+.+++++.|+.+.---.+.+.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~ 147 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN 147 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence 35678999999999999999999999986643 34456677899999999999888999999999887533334444
Q ss_pred EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 165 (326)
.+-.+.+..+.....+... .+..++.... +...++.. .....+..+++|.+.+.++.|.|..+.+.+|.
T Consensus 148 ~lg~Y~~~~~~t~~~~d~~---~~fvGd~~gq----vt~lr~~~----~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~ 216 (404)
T KOG1409|consen 148 RLGGYNFETPASALQFDAL---YAFVGDHSGQ----ITMLKLEQ----NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA 216 (404)
T ss_pred cccceEeeccCCCCceeeE---EEEecccccc----eEEEEEee----cCCceEEEEcCcccceEEEEEcCCCcEEEecc
Confidence 3333322222211111111 1111111111 11111111 23357788999999999999999999999999
Q ss_pred CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (326)
.|..+.+||+--++-.. -...+|...|..+...+--..+++++.||.|-+||++.
T Consensus 217 ~d~~vi~wdigg~~g~~--~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 217 SDHSVIMWDIGGRKGTA--YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccCceEEEeccCCccee--eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99999999986433221 12358999999999888888999999999999999864
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=8.2e-12 Score=109.78 Aligned_cols=217 Identities=15% Similarity=0.072 Sum_probs=131.9
Q ss_pred CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC---CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEE
Q 020461 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (326)
Q Consensus 32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (326)
..|.+||.. +.....+..+...+.+.+|+||++.|+..+.+ ..|.+||+.+++......
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~----------------- 245 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS----------------- 245 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-----------------
Confidence 457888875 44444566677789999999999988877643 358888887665321100
Q ss_pred EEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCC--cEEEEECCCCccccccc
Q 020461 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDA--IVRIWDTETGKLLKESD 185 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~--~i~~wd~~~~~~~~~~~ 185 (326)
..+......|+|+++.++ +.+.++ .|.+||+.+++... +.
T Consensus 246 ------------------------------------~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt 288 (433)
T PRK04922 246 ------------------------------------FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LT 288 (433)
T ss_pred ------------------------------------CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Cc
Confidence 001122457899998665 445555 59999998776432 22
Q ss_pred cccCcceeeEEEEEcCCCCeEEEEeC-CCe--EEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeec
Q 020461 186 KETGHKKTITSLAKAADGSHFLTGSL-DKS--AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (326)
Q Consensus 186 ~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d 262 (326)
.+.......+|+|||+.|+..+. +|. |+++|+.+++..+-..........+|+|+++.++.....+.
T Consensus 289 ---~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~------- 358 (433)
T PRK04922 289 ---NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGG------- 358 (433)
T ss_pred ---cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCC-------
Confidence 33344567899999999887764 444 66677776654332222233446899999998877543321
Q ss_pred ccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC-CcEEEeecCC
Q 020461 263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED-GYVRLHHFDP 319 (326)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D-g~i~l~~~~~ 319 (326)
.+.+.+|+...++.. .+. +........|+|||++++..+.+ +.-+||.++.
T Consensus 359 ----~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 359 ----QYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred ----ceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 123344443322221 111 22234567999999987766653 4444544443
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.9e-11 Score=107.55 Aligned_cols=224 Identities=11% Similarity=0.065 Sum_probs=134.8
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecC---CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeE-EEEeCCCc--E
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQT--A 76 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~---d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~--i 76 (326)
+..+..|...+.+.+|||||+.|+..+. +..|.+|++.+++.. .+..+.+.+...+|+|||+.| ++.+.++. |
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 3556778888999999999998887653 578999999888753 344566677889999999876 46666666 5
Q ss_pred EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
.+||+.+++...............|++++..++...+.... ..+..... .++.. ..+..+.+.+....|+|
T Consensus 273 y~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~--~~Iy~~d~------~g~~~-~~lt~~~~~~~~~~~Sp 343 (435)
T PRK05137 273 YTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGS--PQLYVMNA------DGSNP-RRISFGGGRYSTPVWSP 343 (435)
T ss_pred EEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCC--CeEEEEEC------CCCCe-EEeecCCCcccCeEECC
Confidence 56688777654332233334456777766544433321110 11111111 11111 22222234456688999
Q ss_pred CCcEEEEeeCC---CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC------CeEEEeecCCcceEE
Q 020461 157 LNRTIISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD------KSAKLWDARTLELIK 227 (326)
Q Consensus 157 ~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d------g~i~iwd~~~~~~~~ 227 (326)
+++.|+....+ ..|.+||+..+.. ..+. ....+....|+|||+.|+..+.+ ..+.+.|+..+.. +
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt----~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~ 417 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT----SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-R 417 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCce-Eecc----CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-E
Confidence 99988766543 3688889765432 2222 11235678999999988765543 2577778765443 3
Q ss_pred EEeeccceEEEEeCC
Q 020461 228 TYVTERPVNAVTMSP 242 (326)
Q Consensus 228 ~~~~~~~~~~~~~s~ 242 (326)
.+..+..+...+|+|
T Consensus 418 ~l~~~~~~~~p~Wsp 432 (435)
T PRK05137 418 EVPTPGDASDPAWSP 432 (435)
T ss_pred EccCCCCccCcccCC
Confidence 333233334444544
No 225
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=8.1e-14 Score=114.87 Aligned_cols=194 Identities=19% Similarity=0.322 Sum_probs=150.2
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCC
Q 020461 56 WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 135 (326)
Q Consensus 56 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (326)
..+.++.+|+.++.++.-|.+..+|..++.+.+.+.....+..+.|...+.+++++...+..+.. ..
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-------------~~ 199 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-------------NN 199 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-------------CC
Confidence 45678889999999999999999999999998888877777777777777766666554433211 12
Q ss_pred CceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeE
Q 020461 136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215 (326)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i 215 (326)
|..+..++.| ..+..+.|-|.--+|++++..|.++.-|+.+|+.+..+.. -.+.+..+.-.|-...+-+|-..|+|
T Consensus 200 GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t---~~G~~~vm~qNP~NaVih~GhsnGtV 275 (545)
T KOG1272|consen 200 GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT---GAGRTDVMKQNPYNAVIHLGHSNGTV 275 (545)
T ss_pred CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc---cCCccchhhcCCccceEEEcCCCceE
Confidence 3444445544 4678888989878889999999999999999998876643 23556777778887888899999999
Q ss_pred EEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEE
Q 020461 216 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 295 (326)
Q Consensus 216 ~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 295 (326)
.+|...+.+++. .+..|.++|.+|+
T Consensus 276 SlWSP~skePLv-------------------------------------------------------KiLcH~g~V~siA 300 (545)
T KOG1272|consen 276 SLWSPNSKEPLV-------------------------------------------------------KILCHRGPVSSIA 300 (545)
T ss_pred EecCCCCcchHH-------------------------------------------------------HHHhcCCCcceEE
Confidence 999877655432 2334788889999
Q ss_pred ECCCCceEEeecCCCcEEEeecCCCc
Q 020461 296 FNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 296 ~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
+.++|.|+||.+.|..++||+++.-+
T Consensus 301 v~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 301 VDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred ECCCCcEEeecccccceeEeeecccc
Confidence 99999999999999999999888765
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=3e-13 Score=113.85 Aligned_cols=161 Identities=23% Similarity=0.350 Sum_probs=119.1
Q ss_pred eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461 45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124 (326)
Q Consensus 45 ~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
.+++.||++.|+|++|+.+|.+|++||.|-.+.|||....+.+..+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI---------------------------------- 88 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI---------------------------------- 88 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee----------------------------------
Confidence 4567899999999999999999999999999999998655443322
Q ss_pred eeeccCCCCCCCceEEEeccCccceeEEEEecC--CcEEEEeeCCCcEEEEECCCCcc-------ccccccccCcceeeE
Q 020461 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKL-------LKESDKETGHKKTIT 195 (326)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~-------~~~~~~~~~h~~~v~ 195 (326)
-.||...|.++.|-|. .+.+++|..|..|+++|+...+. ..+..--..|...|.
T Consensus 89 -----------------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVK 151 (758)
T KOG1310|consen 89 -----------------STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVK 151 (758)
T ss_pred -----------------ecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhh
Confidence 2367777888888774 46889999999999999974211 111111235777888
Q ss_pred EEEEcCCC-CeEEEEeCCCeEEEeecCCcc-eEEEE------e--e--ccceEEEEeCCCCCeeEEecCCCcc
Q 020461 196 SLAKAADG-SHFLTGSLDKSAKLWDARTLE-LIKTY------V--T--ERPVNAVTMSPLLDHVVLGGGQDAS 256 (326)
Q Consensus 196 ~v~~s~~~-~~l~s~s~dg~i~iwd~~~~~-~~~~~------~--~--~~~~~~~~~s~~~~~~~~~~~~~~~ 256 (326)
.++..|++ ..+.++++||+|+-+|++... |-... . . -....++.++|.....++.|+.+..
T Consensus 152 ria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpf 224 (758)
T KOG1310|consen 152 RIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPF 224 (758)
T ss_pred heecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCch
Confidence 88888988 678899999999999998631 11111 0 0 1235688999998888877777653
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.49 E-value=4.5e-11 Score=94.95 Aligned_cols=284 Identities=18% Similarity=0.241 Sum_probs=180.4
Q ss_pred CceeEEEEccCCCEEEe-ecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCe-EEEEeCCCcEEEEEccCCcEEE
Q 020461 11 RPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT-LITGSADQTAKLWNVETGAQLF 88 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s-~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~ 88 (326)
+.|..+-|+.|..++++ ...|+.|.+|++...+....+.+-.+.+..++|||||+. |.+...|-.|-+|.+.+-+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 34667888888876654 567889999999999888888888889999999999965 5666688999999998766543
Q ss_pred EEecCCCcceeeeecCCeEEEEEcCc----ccee--------cee-----eeeeeeccCCCCCCCceEEEec--------
Q 020461 89 TFNFDSPARSVDFAVGDKLAVITTDP----FMEL--------NSA-----IHVKRIARDPADQGGESVLILK-------- 143 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------~~~-----~~~~~~~~~~~~~~~~~~~~~~-------- 143 (326)
.--.......+.+.++.++++..... +..+ -.. +....+...+ .+..+.++.
T Consensus 129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP---dg~~laVwd~~Leykv~ 205 (447)
T KOG4497|consen 129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP---DGNWLAVWDNVLEYKVY 205 (447)
T ss_pred ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC---CCcEEEEecchhhheee
Confidence 32222334556677777666554321 0000 000 0000000000 011111111
Q ss_pred -cC-ccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccc---------------------------------cc
Q 020461 144 -GP-QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK---------------------------------ET 188 (326)
Q Consensus 144 -~~-~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---------------------------------~~ 188 (326)
-+ .-.+..+.|+|-+++++.|+.|+.+|+.+--+-+.+.++.. ..
T Consensus 206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 11 13567789999999999999999888753211111100000 00
Q ss_pred ------------------------------CcceeeEEEEEcCCCCeEEEEeCC--CeEEEeecCCcceEEEEeeccceE
Q 020461 189 ------------------------------GHKKTITSLAKAADGSHFLTGSLD--KSAKLWDARTLELIKTYVTERPVN 236 (326)
Q Consensus 189 ------------------------------~h~~~v~~v~~s~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~~ 236 (326)
.....+-.++|++|..+++|-... ..+-+||++..+...-+....++.
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pir 365 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIR 365 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcccee
Confidence 001234557899999888886643 568999999877655555667899
Q ss_pred EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcE
Q 020461 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYV 312 (326)
Q Consensus 237 ~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i 312 (326)
+..|+|....++++.|.. .+++|...-...++. .+..-.|..+.|.-+|..++-++.|..-
T Consensus 366 af~WdP~~prL~vctg~s--------------rLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTGKS--------------RLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred EEEeCCCCceEEEEcCCc--------------eEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 999999998888775533 345555433222222 2222479999999999999999999753
No 228
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.48 E-value=2.6e-13 Score=107.47 Aligned_cols=218 Identities=13% Similarity=0.214 Sum_probs=143.2
Q ss_pred EEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCe-EEEEeCCCcEEEEEccCCcEEEEEecC
Q 020461 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT-LITGSADQTAKLWNVETGAQLFTFNFD 93 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~ 93 (326)
-.+|||+|+++|+++.- .+.|-|.++-+..+.|.. -..|.-+.|..|..+ |..+..|+.|++|++...+-.+++
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI--- 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI--- 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe---
Confidence 45899999999999776 677778777666554433 334555778877765 555668889999998765432221
Q ss_pred CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE-EEEeeCCCcEEE
Q 020461 94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT-IISAGEDAIVRI 172 (326)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~d~~i~~ 172 (326)
...+.++.++.|||+|+. +.+..-+-+|.+
T Consensus 88 -------------------------------------------------deg~agls~~~WSPdgrhiL~tseF~lriTV 118 (447)
T KOG4497|consen 88 -------------------------------------------------DEGQAGLSSISWSPDGRHILLTSEFDLRITV 118 (447)
T ss_pred -------------------------------------------------ccCCCcceeeeECCCcceEeeeecceeEEEE
Confidence 122345677899999965 557777999999
Q ss_pred EECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCe---EEEeecCCcceEEEEeec-cceEEEEeCCCCCeeE
Q 020461 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS---AKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVV 248 (326)
Q Consensus 173 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~---i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~ 248 (326)
|.+.+.+..... -....+..+++.+||++.+-++.-.. +.|..-+.-+.++++..+ .....+.|+|+++.++
T Consensus 119 WSL~t~~~~~~~----~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la 194 (447)
T KOG4497|consen 119 WSLNTQKGYLLP----HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA 194 (447)
T ss_pred EEeccceeEEec----ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE
Confidence 999886654321 11244688899999998887775322 222212222333444322 3567888999988766
Q ss_pred EecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE
Q 020461 249 LGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314 (326)
Q Consensus 249 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l 314 (326)
+ +|+-. .+.+..|... -.+..++|+|.+++||.|+.|+.+|+
T Consensus 195 V-----------wd~~L-eykv~aYe~~------------lG~k~v~wsP~~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 195 V-----------WDNVL-EYKVYAYERG------------LGLKFVEWSPCNQFLAVGSYDQMLRV 236 (447)
T ss_pred E-----------ecchh-hheeeeeeec------------cceeEEEeccccceEEeeccchhhhh
Confidence 4 22110 0111111111 24788999999999999999999998
No 229
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=6.8e-13 Score=110.14 Aligned_cols=260 Identities=16% Similarity=0.199 Sum_probs=161.6
Q ss_pred eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCC--Ccceeeeec---CCeEEEEEcCccceece
Q 020461 46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS--PARSVDFAV---GDKLAVITTDPFMELNS 120 (326)
Q Consensus 46 ~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~ 120 (326)
..+..|.+.|+.+.|...|..|+++|.|..|.+||...+.....+.... -+...+|.| ...++..+.++-...
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~-- 213 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV-- 213 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee--
Confidence 4567899999999999999999999999999999998887766553211 112222332 112222222211111
Q ss_pred eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcce---eeEE
Q 020461 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKK---TITS 196 (326)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~---~v~~ 196 (326)
.........+....+..|.++|..++.-|+.. .|++++.|+.++-+|+++......+.....+.. ...+
T Consensus 214 -------s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~ 286 (559)
T KOG1334|consen 214 -------SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYT 286 (559)
T ss_pred -------eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeee
Confidence 11111122233445567889999999988764 788999999999999987655433322122333 4677
Q ss_pred EEEcCCCC-eEEEEeCCCeEEEeecCCcceE------EEEe-------eccceEEEEeCCCCCeeEEecCCCcceeEeec
Q 020461 197 LAKAADGS-HFLTGSLDKSAKLWDARTLELI------KTYV-------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (326)
Q Consensus 197 v~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~------~~~~-------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d 262 (326)
++..|... .+++|+.|..+++||.+..... .++. ....|.+++++-.+..++++-.+...++..-+
T Consensus 287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence 78888655 7999999999999998764322 2221 12357889998776666655443332222111
Q ss_pred ccCceeeeEeeccc--ceeeeccccccC--cceeEEEE-CCCCceEEeecCCCcEEEeec
Q 020461 263 HRAGKFEAKFFDKI--LQEEIGGVKGHF--GPINALAF-NPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 263 ~~~~~~~~~~~~~~--~~~~~~~~~~h~--~~v~~v~~-s~d~~~lat~s~Dg~i~l~~~ 317 (326)
...+. ...... .+.....++||. .+|..+-| -|...|+++||.=|.|-||+=
T Consensus 367 ~~~G~---~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 367 MGDGS---EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred cccCC---CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence 11110 000000 011122377884 46888887 588999999999999999973
No 230
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=5.5e-12 Score=113.94 Aligned_cols=227 Identities=15% Similarity=0.212 Sum_probs=143.9
Q ss_pred ceeEEEEcc--CCCEEEeecCCCCeEEEec-CC----CCeeeeccCcc-------cceEEEEEcCCCCeEEEEeCCCcEE
Q 020461 12 PLTYLKYNK--DGDLLFSCAKDHTPTVWFA-DN----GERLGTYRGHN-------GAVWCCDVSRDSMTLITGSADQTAK 77 (326)
Q Consensus 12 ~i~~~~~s~--~~~~l~s~~~d~~v~iw~~-~~----~~~~~~~~~h~-------~~V~~~~~~~~~~~l~s~~~d~~i~ 77 (326)
.|+.+.+-. |..++++|+.||.||||+- .+ .+.+..+.+-+ +.=.-++|-....+|+++|.-..|+
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence 456666553 4568999999999999943 22 34454443211 1113357777667788888789999
Q ss_pred EEEccCCcEEEEEecCCC--ccee--eeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccc--eeE
Q 020461 78 LWNVETGAQLFTFNFDSP--ARSV--DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR--INR 151 (326)
Q Consensus 78 ~wd~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~ 151 (326)
+||.........+..... +..+ +...++.+++...++.. ++.+....+ ....+...+.|+.. |..
T Consensus 1191 IWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsv------RvyD~R~a~---~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1191 IWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSV------RVYDRRMAP---PDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred EEecccceeEeecccCCCccceeecccccCCceEEEeecCCce------EEeecccCC---ccccceeecccCCccccee
Confidence 999987766655543321 1111 12234455554444332 333222211 12456777888877 999
Q ss_pred EEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcc---eeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEE
Q 020461 152 AVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHK---KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (326)
Q Consensus 152 ~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 227 (326)
+.+.+.|- .|++|+.||.|++||++.......+. ...|. ...+++..++....+|+|+. +.|+||++.. +.+.
T Consensus 1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~-iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~ 1338 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT-IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLN 1338 (1387)
T ss_pred EEeecCCCcceeeeccCCeEEEEecccCcccccce-eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhc
Confidence 99988765 59999999999999998743222221 12232 35899999999999999999 9999999863 3223
Q ss_pred EEe--------eccceEEEEeCCCCCeeEEe
Q 020461 228 TYV--------TERPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 228 ~~~--------~~~~~~~~~~s~~~~~~~~~ 250 (326)
.+. ....+.|++|+|.--.++++
T Consensus 1339 ~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1339 IIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred ccccCcccccCcCCCcceeeecchhHhhhhc
Confidence 221 12357899999975444443
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=3.4e-11 Score=105.59 Aligned_cols=217 Identities=14% Similarity=0.116 Sum_probs=126.6
Q ss_pred CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC---CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEE
Q 020461 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (326)
Q Consensus 32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (326)
..+.++|. ++.....+..+...+.+.+|+||++.|+..+.+ ..|.+||+.+++......
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~----------------- 237 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN----------------- 237 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-----------------
Confidence 34556665 444444556777889999999999988776643 348888987765421100
Q ss_pred EEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCCcEEEEEC--CCCccccccc
Q 020461 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDT--ETGKLLKESD 185 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~~i~~wd~--~~~~~~~~~~ 185 (326)
..+......|+|+++.|+ +.+.++...||.+ ..+. ...+.
T Consensus 238 ------------------------------------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt 280 (427)
T PRK02889 238 ------------------------------------FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLT 280 (427)
T ss_pred ------------------------------------CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECC
Confidence 011223467999998776 5677887666654 4433 22222
Q ss_pred cccCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeec--CCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeec
Q 020461 186 KETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDA--RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (326)
Q Consensus 186 ~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d 262 (326)
.+........|+|||+.|+..+. +|...+|.+ .+++..+...........+|+|+++.++.+...++
T Consensus 281 ---~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g------- 350 (427)
T PRK02889 281 ---QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG------- 350 (427)
T ss_pred ---CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCC-------
Confidence 23444567789999998886654 456666654 44433222112222335789999998876544322
Q ss_pred ccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCC-cEEEeecCC
Q 020461 263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDG-YVRLHHFDP 319 (326)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg-~i~l~~~~~ 319 (326)
.+.+.+|+...++... +.. ........|+|||++|+.++.++ .-.++-++.
T Consensus 351 ----~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 351 ----AFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred ----cEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 1233444433222111 111 12346789999999987777544 434544443
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.45 E-value=1.4e-09 Score=92.74 Aligned_cols=262 Identities=16% Similarity=0.202 Sum_probs=153.3
Q ss_pred CceeEEEEccCCCEEEeecC----CCCeEEEecCCC--Ce--eeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEEEc
Q 020461 11 RPLTYLKYNKDGDLLFSCAK----DHTPTVWFADNG--ER--LGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNV 81 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~----d~~v~iw~~~~~--~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~ 81 (326)
.....++++|++++|.++.. ++.|..|.+... .+ +.........-..++++|++++|+++. .+|+|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34578999999999988776 568888877653 32 233332223344588999999999888 5899999999
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
.....+..... . . ..... ..++. +.......++.++|+++++
T Consensus 117 ~~~g~l~~~~~--------------~--~------~~~g~------g~~~~----------rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 117 DDDGSLGEVVQ--------------T--V------RHEGS------GPNPD----------RQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp CTTSEEEEEEE--------------E--E------ESEEE------ESSTT----------TTSSTCEEEEEE-TTSSEE
T ss_pred cCCcccceeee--------------e--c------ccCCC------CCccc----------ccccccceeEEECCCCCEE
Confidence 76322211100 0 0 00000 00000 0112345678899999977
Q ss_pred EEe-eCCCcEEEEECCCCc--cccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecC--Cc--ceEEEEee--
Q 020461 162 ISA-GEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDAR--TL--ELIKTYVT-- 231 (326)
Q Consensus 162 ~s~-~~d~~i~~wd~~~~~--~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~--~~--~~~~~~~~-- 231 (326)
++. -....|.+|++.... +..............+.+.|+|+++++.... .+++|.++++. ++ +.++....
T Consensus 159 ~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 159 YVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp EEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred EEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence 654 345579999987654 2111111123345678999999999887665 57889999888 33 22232221
Q ss_pred -----ccceEEEEeCCCCCeeEEecC-CCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEe
Q 020461 232 -----ERPVNAVTMSPLLDHVVLGGG-QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS 305 (326)
Q Consensus 232 -----~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat 305 (326)
......+.++|+++.++++.. .+...+...|...+.+.. +..+......-+.++++|+|++|++
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~----------~~~~~~~G~~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL----------VQTVPTGGKFPRHFAFSPDGRYLYV 308 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE----------EEEEEESSSSEEEEEE-TTSSEEEE
T ss_pred ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE----------EEEEeCCCCCccEEEEeCCCCEEEE
Confidence 114678999999999888653 333333333333333221 1111111123688999999999876
Q ss_pred ec-CCCcEEEeecCCC
Q 020461 306 GG-EDGYVRLHHFDPD 320 (326)
Q Consensus 306 ~s-~Dg~i~l~~~~~~ 320 (326)
+. .++.|.+|+++++
T Consensus 309 a~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 309 ANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EETTTTEEEEEEEETT
T ss_pred EecCCCeEEEEEEeCC
Confidence 65 5789999998765
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=4e-11 Score=97.19 Aligned_cols=245 Identities=20% Similarity=0.298 Sum_probs=160.9
Q ss_pred CceeEEEEccCC--CEEEeecCCCCeEEEecCCCCeeeec------cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 11 RPLTYLKYNKDG--DLLFSCAKDHTPTVWFADNGERLGTY------RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 11 ~~i~~~~~s~~~--~~l~s~~~d~~v~iw~~~~~~~~~~~------~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
..+..++|.-++ +.|..++.|..+..+......+...+ ...+++|-.+... +..|++|-.+|-+++|..+
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEecc
Confidence 345677777555 46777778878777776665554432 3345566665543 3468889999999999887
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTI 161 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 161 (326)
.+..- ..+... +.. + .++..+.-+|.. ..+
T Consensus 134 ~~d~h-----ss~l~~--la~--------------------------------g----------~g~~~~r~~~~~p~Iv 164 (412)
T KOG3881|consen 134 SGDLH-----SSKLIK--LAT--------------------------------G----------PGLYDVRQTDTDPYIV 164 (412)
T ss_pred CCccc-----ccccee--eec--------------------------------C----------CceeeeccCCCCCceE
Confidence 54311 000000 000 0 111122222323 356
Q ss_pred EEeeCC--CcEEEEECCCCcccccccc----ccC--cceeeEEEEEcCC--CCeEEEEeCCCeEEEeecCCc-ceEEEEe
Q 020461 162 ISAGED--AIVRIWDTETGKLLKESDK----ETG--HKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTL-ELIKTYV 230 (326)
Q Consensus 162 ~s~~~d--~~i~~wd~~~~~~~~~~~~----~~~--h~~~v~~v~~s~~--~~~l~s~s~dg~i~iwd~~~~-~~~~~~~ 230 (326)
++||.. ..+++||+++.+.+..-.. ..+ -.--++++.|-+. ...|+|++.-+.+++||.+.+ .++.++.
T Consensus 165 a~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd 244 (412)
T KOG3881|consen 165 ATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD 244 (412)
T ss_pred ecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec
Confidence 779988 8899999987654322110 001 1223567778777 788999999999999999865 5666665
Q ss_pred -eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC
Q 020461 231 -TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED 309 (326)
Q Consensus 231 -~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D 309 (326)
.+.++.++...|.++.++++-. ...+..+|.|.+..-- ..+++-.+.|.++-.+|..+++|+|+-|
T Consensus 245 ~~E~~is~~~l~p~gn~Iy~gn~--~g~l~~FD~r~~kl~g-----------~~~kg~tGsirsih~hp~~~~las~GLD 311 (412)
T KOG3881|consen 245 FLENPISSTGLTPSGNFIYTGNT--KGQLAKFDLRGGKLLG-----------CGLKGITGSIRSIHCHPTHPVLASCGLD 311 (412)
T ss_pred cccCcceeeeecCCCcEEEEecc--cchhheecccCceeec-----------cccCCccCCcceEEEcCCCceEEeeccc
Confidence 3678999999999998777533 3345566766654321 1256667889999999999999999999
Q ss_pred CcEEEeecCC
Q 020461 310 GYVRLHHFDP 319 (326)
Q Consensus 310 g~i~l~~~~~ 319 (326)
..||||+.+.
T Consensus 312 RyvRIhD~kt 321 (412)
T KOG3881|consen 312 RYVRIHDIKT 321 (412)
T ss_pred eeEEEeeccc
Confidence 9999998876
No 234
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=4.7e-11 Score=104.94 Aligned_cols=192 Identities=13% Similarity=0.098 Sum_probs=123.9
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCC---CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCC--cE
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQ--TA 76 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d---~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~--~i 76 (326)
+..+..+...+...+|||||++|+.++.+ ..|++|++.+++... +..+.+.+.+++|+||++.|+ +.+.++ .|
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence 34455666678889999999998876643 479999998886543 334556677889999998665 455544 46
Q ss_pred EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
.+||+.+++..... .+........|+|
T Consensus 261 ~~~d~~~~~~~~l~-----------------------------------------------------~~~~~~~~~~~s~ 287 (417)
T TIGR02800 261 YVMDLDGKQLTRLT-----------------------------------------------------NGPGIDTEPSWSP 287 (417)
T ss_pred EEEECCCCCEEECC-----------------------------------------------------CCCCCCCCEEECC
Confidence 66776654321100 0011122346888
Q ss_pred CCcEEEEeeC-CC--cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC---eEEEeecCCcceEEEEe
Q 020461 157 LNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYV 230 (326)
Q Consensus 157 ~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~ 230 (326)
+++.|+..+. ++ .|.++|+.+++... +. .+........++|+|.+++.++.++ .|.+||+.++.. ..+.
T Consensus 288 dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~ 362 (417)
T TIGR02800 288 DGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLT 362 (417)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEE-ee---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEcc
Confidence 8887766554 33 57777877655322 21 2334566788999999999888876 799999987543 2222
Q ss_pred eccceEEEEeCCCCCeeEEecCC
Q 020461 231 TERPVNAVTMSPLLDHVVLGGGQ 253 (326)
Q Consensus 231 ~~~~~~~~~~s~~~~~~~~~~~~ 253 (326)
.........|+|++..++.+...
T Consensus 363 ~~~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 363 DTGLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred CCCCCCCceECCCCCEEEEEEeC
Confidence 22233456789998887765443
No 235
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.8e-10 Score=97.61 Aligned_cols=292 Identities=17% Similarity=0.185 Sum_probs=168.0
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEE-----EeCC-----CcEEEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT-----GSAD-----QTAKLWN 80 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s-----~~~d-----~~i~~wd 80 (326)
.++...++|++|++++. +.+..++|++..++..+.+...- .+..+.|+|-+.+|.+ --.+ --+++|+
T Consensus 35 ~~~~v~~~S~~G~lfA~-~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAY-SDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEE-EcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 34677889999987764 56678999998888644443332 7889999999888765 1122 3366999
Q ss_pred ccCCcEEEEEecCCCc-ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461 81 VETGAQLFTFNFDSPA-RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (326)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (326)
..++.....++..... ....|+.++.+++-... ....+.++.. ......+-|...|+...++|-++
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~------nev~f~~~~~-------f~~~~~kl~~~~i~~f~lSpgp~ 178 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVS------NEVQFYDLGS-------FKTIQHKLSVSGITMLSLSPGPE 178 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhhhhhc------ceEEEEecCC-------ccceeeeeeccceeeEEecCCCC
Confidence 9885544444322221 34455555554432111 1111111111 11112233466788888888632
Q ss_pred --EEEE-----eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe---EEEEeCC---------CeEEEeec
Q 020461 160 --TIIS-----AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH---FLTGSLD---------KSAKLWDA 220 (326)
Q Consensus 160 --~l~s-----~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~---l~s~s~d---------g~i~iwd~ 220 (326)
.+++ .|.-+.++||..........+....-....-..+.|.+-|.- |++...| .++++.++
T Consensus 179 ~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t 258 (566)
T KOG2315|consen 179 PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT 258 (566)
T ss_pred CceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence 3332 455667999987522111111110111222234556655442 2222233 36888888
Q ss_pred CCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCc------------------------------eeee
Q 020461 221 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG------------------------------KFEA 270 (326)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~------------------------------~~~~ 270 (326)
+...+.-.+..+++|.++.|+|++..++++-|.--..++.+|.+.. .-.+
T Consensus 259 ~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 259 QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDM 338 (566)
T ss_pred cCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCce
Confidence 8656666666678999999999998877665554433333333321 1234
Q ss_pred EeecccceeeeccccccCcceeEEEECCCCceEEeecC------CCcEEEeecCCC
Q 020461 271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE------DGYVRLHHFDPD 320 (326)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~------Dg~i~l~~~~~~ 320 (326)
.+||....+.+..+.. ..-+-+.|+|||.+|.|++. |+.++||++.-.
T Consensus 339 EvwDv~n~K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 339 EVWDVPNRKLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEeccchhhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 5566655554444432 34566999999999977765 788999998643
No 236
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=1.9e-11 Score=110.34 Aligned_cols=190 Identities=17% Similarity=0.253 Sum_probs=139.7
Q ss_pred EEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccce-EE---EEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461 17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-WC---CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF 92 (326)
Q Consensus 17 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V-~~---~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 92 (326)
.+..+.+.++....+..+.+|+.+.+....+........ .+ +-++++.-++++|+.-+-|-+|+....+
T Consensus 94 ~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn------- 166 (967)
T KOG0974|consen 94 KLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN------- 166 (967)
T ss_pred chhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-------
Confidence 344556677777788899999988777666554433221 11 2235555678888888888888864110
Q ss_pred CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEE
Q 020461 93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI 172 (326)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~ 172 (326)
.+. .+.||.+.|.++.++-+|.++++.|+|.++++
T Consensus 167 --------------------------------------------~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRl 201 (967)
T KOG0974|consen 167 --------------------------------------------KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRL 201 (967)
T ss_pred --------------------------------------------Ccc-eecccCCceEEEEEccCCcEEEEEecCcceee
Confidence 001 45789999999999999999999999999999
Q ss_pred EECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecC
Q 020461 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 173 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 252 (326)
|++.+++... ....+|+..+..++++++ +++|++.|-+.++|+..- +.+.
T Consensus 202 W~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~------------------------- 251 (967)
T KOG0974|consen 202 WPIDSREVLG--CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLE------------------------- 251 (967)
T ss_pred eecccccccC--cccccccceeEEEEeccc--eeEEeccceEEEEEeccc-ceeh-------------------------
Confidence 9999887655 233589999999999998 899999999999995321 1111
Q ss_pred CCcceeEeecccCceeeeEeecccceeeeccccccC-cceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 253 QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF-GPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
.+.+|. .-|+.++..++....+|++.||.+++|++-
T Consensus 252 ------------------------------~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 252 ------------------------------VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ------------------------------hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 112232 247889998888889999999999998764
No 237
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=3.8e-12 Score=120.40 Aligned_cols=206 Identities=16% Similarity=0.229 Sum_probs=143.8
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
.++.|-..+.++.=+|...+.+||+.||+|++|....+..+..++. -+..|..+.|+.+|+.+..+..||.+.+|...
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 3445556788888889999999999999999999888887777753 23679999999999999999999999999987
Q ss_pred CcEEEEEecCCC-cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 84 GAQLFTFNFDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
.+.....+.+.. ...+.|.. ..++..+.. ..+..+..|+... ..+.. .+...|.+.++++++-|..+.|+
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s---~d~~n~~lwDtl~----~~~~s-~v~~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG-SLLATAGRS---SDNRNVCLWDTLL----PPMNS-LVHTCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred CcceeccccCCccccceeeee-hhhhccccC---CCCCcccchhccc----Ccccc-eeeeecCCCceEEEEcCcceEEE
Confidence 344434433221 11111111 001000000 0111122222111 11122 22388999999999999999999
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 233 (326)
+||.+|.|++||++..++++.+.. ++ ...++++|+..|.++||++.....++++..+.
T Consensus 2353 sggr~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 999999999999998777655431 33 45689999999999999999888888776553
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=2.6e-10 Score=100.52 Aligned_cols=191 Identities=13% Similarity=0.106 Sum_probs=118.8
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCC---CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCc--E
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--A 76 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d---~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~--i 76 (326)
++.+..+...+...+|||||+.|+..+.+ ..|.+|++.+++... +....+.+...+|+|||+.|+ +.+.++. |
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34555677788899999999998876543 358888998886543 223334455789999998775 5555553 5
Q ss_pred EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
.+||+.+++.... ..+........|+|
T Consensus 270 y~~d~~~~~~~~l-----------------------------------------------------t~~~~~~~~~~~sp 296 (430)
T PRK00178 270 YVMDLASRQLSRV-----------------------------------------------------TNHPAIDTEPFWGK 296 (430)
T ss_pred EEEECCCCCeEEc-----------------------------------------------------ccCCCCcCCeEECC
Confidence 5667665542110 00111123356899
Q ss_pred CCcEEEEeeC-CC--cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-C--eEEEeecCCcceEEEEe
Q 020461 157 LNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-K--SAKLWDARTLELIKTYV 230 (326)
Q Consensus 157 ~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~ 230 (326)
+++.|+..+. ++ .|.++|+.+++... +.. .+ .......|+|||+.++..+.+ + .|.+||+.+++. +.+.
T Consensus 297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~-~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt 371 (430)
T PRK00178 297 DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTF-VG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILT 371 (430)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEE-eec-CC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEcc
Confidence 9887765543 33 47777877665422 211 11 223356899999998877653 3 588899988764 3332
Q ss_pred eccceEEEEeCCCCCeeEEecC
Q 020461 231 TERPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 231 ~~~~~~~~~~s~~~~~~~~~~~ 252 (326)
.........|+|++..++.+..
T Consensus 372 ~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 372 DTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred CCCCCCCceECCCCCEEEEEEe
Confidence 2222234579999988877644
No 239
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=8.2e-11 Score=95.41 Aligned_cols=209 Identities=17% Similarity=0.253 Sum_probs=144.4
Q ss_pred CCEEEeecCCCCeEEEecCCCCe----eeeccCcccceEEEEEcCCCC-eEEEEeCC--CcEEEEEccCCcEEEEEecC-
Q 020461 22 GDLLFSCAKDHTPTVWFADNGER----LGTYRGHNGAVWCCDVSRDSM-TLITGSAD--QTAKLWNVETGAQLFTFNFD- 93 (326)
Q Consensus 22 ~~~l~s~~~d~~v~iw~~~~~~~----~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d--~~i~~wd~~~~~~~~~~~~~- 93 (326)
...|++|-.+|.+.+|..+.+.. ...+..+ ..+..+.-++... .+++||.. .-+++||+++.+.++.-..-
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp 193 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP 193 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence 34677889999999999875432 2223332 4455565566544 45668888 78999999988665543211
Q ss_pred C-------C--cceeeeecC--C-eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 94 S-------P--ARSVDFAVG--D-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 94 ~-------~--~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
. | ...+.|.++ . +++.+... ....+.+.. .+..++..+.-...++.++...|.++.+
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~------hqvR~YDt~-----~qRRPV~~fd~~E~~is~~~l~p~gn~I 262 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRY------HQVRLYDTR-----HQRRPVAQFDFLENPISSTGLTPSGNFI 262 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecc------eeEEEecCc-----ccCcceeEeccccCcceeeeecCCCcEE
Confidence 0 1 122334433 2 22222111 111122211 2335666677778889999999999999
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeC
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS 241 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s 241 (326)
++|..-+.+..+|+++++..... ..+..+.++++..+|.++++++++.|..+||+|+++.+++...+....++++.+.
T Consensus 263 y~gn~~g~l~~FD~r~~kl~g~~--~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~ 340 (412)
T KOG3881|consen 263 YTGNTKGQLAKFDLRGGKLLGCG--LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLR 340 (412)
T ss_pred EEecccchhheecccCceeeccc--cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEec
Confidence 99999999999999998876542 2356788999999999999999999999999999998888887777778888776
Q ss_pred CCC
Q 020461 242 PLL 244 (326)
Q Consensus 242 ~~~ 244 (326)
+..
T Consensus 341 ~~~ 343 (412)
T KOG3881|consen 341 DDV 343 (412)
T ss_pred CCc
Confidence 543
No 240
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=4.4e-09 Score=85.03 Aligned_cols=266 Identities=14% Similarity=0.151 Sum_probs=161.8
Q ss_pred eeecCCceeEEEEccCCCEEEeecCC---CCeEEEecCC--CCeeee--ccCcccceEEEEEcCCCCeEEEEeC-CCcEE
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADN--GERLGT--YRGHNGAVWCCDVSRDSMTLITGSA-DQTAK 77 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d---~~v~iw~~~~--~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~-d~~i~ 77 (326)
+-.+...++.++|+|+.++|.++..+ |.|--|.+.. |++... ...-..+-.-+++++++++++++.. -|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 34456678999999999999887654 6666665543 544221 1111122256888999999999884 57788
Q ss_pred EEEccCCcEEE-EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 78 LWNVETGAQLF-TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 78 ~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
++-++....+. ..+. +.. ..++.. .+.-..-+....++|
T Consensus 115 v~p~~~dG~l~~~v~~----------------------------------~~h---~g~~p~---~rQ~~~h~H~a~~tP 154 (346)
T COG2706 115 VYPLQADGSLQPVVQV----------------------------------VKH---TGSGPH---ERQESPHVHSANFTP 154 (346)
T ss_pred EEEcccCCccccceee----------------------------------eec---CCCCCC---ccccCCccceeeeCC
Confidence 88775522111 0000 000 000000 000112255678999
Q ss_pred CCcEEEEee-CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecCCc----ceEEEEe
Q 020461 157 LNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTL----ELIKTYV 230 (326)
Q Consensus 157 ~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~~~----~~~~~~~ 230 (326)
+++++++.. .-..|.+|++..+++...-..........+.+.|+|++++....++ +++|.+|..... +.++.+.
T Consensus 155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~ 234 (346)
T COG2706 155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID 234 (346)
T ss_pred CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec
Confidence 999887652 2345999999988765432222334456789999999999887775 899999988763 2333322
Q ss_pred -------eccceEEEEeCCCCCeeEEecC-CCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCce
Q 020461 231 -------TERPVNAVTMSPLLDHVVLGGG-QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 302 (326)
Q Consensus 231 -------~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~ 302 (326)
.......+-++++|+.+.++-. .+...++..|...+.+...-+. ..+.-.-+.+.|+|+|++
T Consensus 235 tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~----------~teg~~PR~F~i~~~g~~ 304 (346)
T COG2706 235 TLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT----------PTEGQFPRDFNINPSGRF 304 (346)
T ss_pred cCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe----------ccCCcCCccceeCCCCCE
Confidence 1234667889999999888743 2333333334433332221111 112123578999999999
Q ss_pred EEeecCC-CcEEEeecCCCc
Q 020461 303 FSSGGED-GYVRLHHFDPDY 321 (326)
Q Consensus 303 lat~s~D-g~i~l~~~~~~~ 321 (326)
|+++..| ..|.+|..+++.
T Consensus 305 Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 305 LIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEccCCCcEEEEEEcCCC
Confidence 8877774 579999988764
No 241
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.36 E-value=5.5e-09 Score=89.20 Aligned_cols=277 Identities=14% Similarity=0.107 Sum_probs=151.9
Q ss_pred EEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecC
Q 020461 25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG 104 (326)
Q Consensus 25 l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 104 (326)
+++-..++.|.+.|..+.+.+.++......-..+.|+||++++++++.|+.|.++|+.+.+.+..+.......++.++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~D 88 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPD 88 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--T
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCC
Confidence 35566789999999999999999987554445577999999999999999999999999998888877666777888877
Q ss_pred CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc-------CccceeEEEEecCCcEEE-EeeCCCcEEEEECC
Q 020461 105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-------PQGRINRAVWGPLNRTII-SAGEDAIVRIWDTE 176 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~-s~~~d~~i~~wd~~ 176 (326)
++.++++... ...+.+.+. .+.+.+..+.. ..+++..+.-+|....++ +.-+-+.|-+.|..
T Consensus 89 G~~~~v~n~~----~~~v~v~D~------~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 89 GKYVYVANYE----PGTVSVIDA------ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp TTEEEEEEEE----TTEEEEEET------TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEecC----CCceeEecc------ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 7766554311 011111110 11222322221 345667777788877555 44555778787876
Q ss_pred CCccccccccccCcceeeEEEEEcCCCCeEEEE-eCCCeEEEeecCCcceEEEEeec-----cceEEEEeCCCCCeeEEe
Q 020461 177 TGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTE-----RPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 177 ~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~ 250 (326)
..+....... .-........++|++++++.+ ..+..|-++|.++++.+..+... .+...+ -+|....+...
T Consensus 159 d~~~~~~~~i--~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~ 235 (369)
T PF02239_consen 159 DPKNLKVTTI--KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWAT 235 (369)
T ss_dssp TSSCEEEEEE--E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEE
T ss_pred cccccceeee--cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEee
Confidence 5443321111 112345678899999987665 45778999999998887765432 122222 23433333333
Q ss_pred cCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee----cCCCcEEEeecCC
Q 020461 251 GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG----GEDGYVRLHHFDP 319 (326)
Q Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~----s~Dg~i~l~~~~~ 319 (326)
.+.....+...... ....++....+.+..+....++ .-+.-+|+++++... ...++|.+++...
T Consensus 236 ~~~~~~~~~~ig~~----~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 236 SGLGYFAIPLIGTD----PVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp EBSSSSEEEEEE------TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred ccccceecccccCC----ccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 32222221111110 0111222222223333333344 778889999999887 4458888866554
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3.4e-10 Score=99.67 Aligned_cols=192 Identities=15% Similarity=0.096 Sum_probs=113.0
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecC-CC--CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCc--EE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAK-DH--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--AK 77 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~-d~--~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~--i~ 77 (326)
+.+..+...+.+..|||||+.|+..+. ++ .|.+||+.+++... +....+.....+|+||++.|+ +.+.++. |.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 344455667788999999998887653 33 57788988876432 222233345688999999765 4566665 44
Q ss_pred EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
++|+.+++.... ..+........|+|+
T Consensus 290 ~~dl~tg~~~~l-----------------------------------------------------t~~~~~~~~p~wSpD 316 (448)
T PRK04792 290 VVDIATKALTRI-----------------------------------------------------TRHRAIDTEPSWHPD 316 (448)
T ss_pred EEECCCCCeEEC-----------------------------------------------------ccCCCCccceEECCC
Confidence 445554432110 001112234578999
Q ss_pred CcEEEEeeC-CC--cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CC--eEEEeecCCcceEEEEee
Q 020461 158 NRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVT 231 (326)
Q Consensus 158 ~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~ 231 (326)
++.|+..+. ++ .|.++|+.+++... +.. .+ ......+|+|||++++..+. ++ .|.++|+.+++.. .+..
T Consensus 317 G~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~-~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~ 391 (448)
T PRK04792 317 GKSLIFTSERGGKPQIYRVNLASGKVSR-LTF-EG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTS 391 (448)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEE-Eec-CC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccC
Confidence 987765443 34 46666777665432 211 11 22345689999999887655 34 4556788777642 2222
Q ss_pred ccceEEEEeCCCCCeeEEecCCC
Q 020461 232 ERPVNAVTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 232 ~~~~~~~~~s~~~~~~~~~~~~~ 254 (326)
........|+|+++.++.+...+
T Consensus 392 ~~~d~~ps~spdG~~I~~~~~~~ 414 (448)
T PRK04792 392 TRLDESPSVAPNGTMVIYSTTYQ 414 (448)
T ss_pred CCCCCCceECCCCCEEEEEEecC
Confidence 21222447999998887765433
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2.8e-11 Score=102.71 Aligned_cols=192 Identities=16% Similarity=0.216 Sum_probs=140.0
Q ss_pred EEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCC
Q 020461 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS 94 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 94 (326)
.++++.-..=|+.++....|+-.|++.|..+..|....+.++++..++-..+|+.|+.+|.|..||..+...+..+....
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence 45555333334444455577888999999999998888999999999988899999999999999998765443332111
Q ss_pred CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEE
Q 020461 95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174 (326)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd 174 (326)
.+.+ .+. ......|+++.|+.+|-.++.|..+|.+.|||
T Consensus 218 ~v~s-------------------------------~pg----------~~~~~svTal~F~d~gL~~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 218 SVNS-------------------------------HPG----------GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD 256 (703)
T ss_pred ccCC-------------------------------Ccc----------ccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence 0000 000 00123478888998888999999999999999
Q ss_pred CCCCccccccccccCcceeeEEEEEcCC--CCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEe
Q 020461 175 TETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 175 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 250 (326)
+++.+.+.... .+-.-+|..+.|.+. +..++|.. ...++|||..+++....+.....++.+|+-|....++++
T Consensus 257 LRa~~pl~~kd--h~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 257 LRASKPLLVKD--HGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred cccCCceeecc--cCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence 99887765332 234567888888765 44455544 467999999999999888888889999999988777765
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=5.8e-10 Score=98.07 Aligned_cols=207 Identities=16% Similarity=0.102 Sum_probs=124.5
Q ss_pred CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC---CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEE
Q 020461 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (326)
Q Consensus 32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (326)
..|.++|.. +.....+..+...+...+|+||+++|+.++.+ ..|.+||+.+++.....
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~------------------ 230 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA------------------ 230 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee------------------
Confidence 356677764 33344555667788999999999988876643 46888888766432110
Q ss_pred EEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCC--cEEEEECCCCccccccc
Q 020461 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDA--IVRIWDTETGKLLKESD 185 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~--~i~~wd~~~~~~~~~~~ 185 (326)
.+.+.+....|+|+++.|+ +.+.++ .|.+||+.+++... +.
T Consensus 231 -----------------------------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~ 274 (417)
T TIGR02800 231 -----------------------------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LT 274 (417)
T ss_pred -----------------------------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CC
Confidence 0111223467899988665 444444 58889988765322 21
Q ss_pred cccCcceeeEEEEEcCCCCeEEEEeCC-C--eEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCC-cceeEee
Q 020461 186 KETGHKKTITSLAKAADGSHFLTGSLD-K--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD-ASAVTTT 261 (326)
Q Consensus 186 ~~~~h~~~v~~v~~s~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~ 261 (326)
.+........|++||+.|+..+.. + .|+++|+.+++...-...........++|+++.++.+.... ...+..+
T Consensus 275 ---~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~ 351 (417)
T TIGR02800 275 ---NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM 351 (417)
T ss_pred ---CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence 233344567899999988776643 3 58888888766433322334456778999998877765432 1223333
Q ss_pred cccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCC
Q 020461 262 DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDG 310 (326)
Q Consensus 262 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg 310 (326)
|...+. . ..+... ......+|+|||++|+..+.++
T Consensus 352 d~~~~~------------~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 352 DLDGGG------------E-RVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred eCCCCC------------e-EEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 322211 1 111111 1234568999999988777765
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=8.4e-10 Score=96.50 Aligned_cols=191 Identities=14% Similarity=0.059 Sum_probs=109.0
Q ss_pred ecCCceeEEEEccCCCE--E-EeecCCC--CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC-CC----cEE
Q 020461 8 GHERPLTYLKYNKDGDL--L-FSCAKDH--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQ----TAK 77 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~--l-~s~~~d~--~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-d~----~i~ 77 (326)
........=+|||||+. + ++...++ .|.+.++.+++... +....+.....+|+|||+.|+-.+. +| .+.
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence 33444566799999974 2 2444444 45566887775432 2223444566899999988765542 23 222
Q ss_pred EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
.|++..+.. +.......+..+......|+|+
T Consensus 261 ~~~~~~g~~-------------------------------------------------g~~~~lt~~~~~~~~~p~wSPD 291 (428)
T PRK01029 261 SFSLETGAI-------------------------------------------------GKPRRLLNEAFGTQGNPSFSPD 291 (428)
T ss_pred EeecccCCC-------------------------------------------------CcceEeecCCCCCcCCeEECCC
Confidence 233322100 0000111111122345689999
Q ss_pred CcEEEEee-CCCcEEEEE--CCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeCC---CeEEEeecCCcceEEEEe
Q 020461 158 NRTIISAG-EDAIVRIWD--TET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV 230 (326)
Q Consensus 158 ~~~l~s~~-~d~~i~~wd--~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~ 230 (326)
|+.|+..+ .+|...+|. +.. +.....+. .+...+....|+|||+.|+..+.+ ..|.+||+.+++...-..
T Consensus 292 G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt---~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~ 368 (428)
T PRK01029 292 GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT---KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT 368 (428)
T ss_pred CCEEEEEECCCCCceEEEEECcccccceEEec---cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC
Confidence 99777655 466656664 332 22122121 223456678999999998876543 369999999887643322
Q ss_pred eccceEEEEeCCCCCeeEEec
Q 020461 231 TERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 231 ~~~~~~~~~~s~~~~~~~~~~ 251 (326)
.........|+|+++.++...
T Consensus 369 ~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 369 SPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred CCCCccceEECCCCCEEEEEE
Confidence 233566789999998877654
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=1.6e-11 Score=110.65 Aligned_cols=150 Identities=24% Similarity=0.342 Sum_probs=121.3
Q ss_pred EEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCC
Q 020461 16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP 95 (326)
Q Consensus 16 ~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 95 (326)
+.++++.-++++|+.-+.+.+|.....+.-..+.+|.+.+..+.++.||+++++.|.|+++|+|++++.+..-
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~------- 211 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG------- 211 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------
Confidence 3456777799999999999999887444444688999999999999999999999999999999998765321
Q ss_pred cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEEC
Q 020461 96 ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT 175 (326)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~ 175 (326)
...-+|..++..+.+.|. .++|++.|-+.++|+.
T Consensus 212 --------------------------------------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 212 --------------------------------------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred --------------------------------------------cccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 012368888999999997 8999999999999976
Q ss_pred CCCccccccccccCcc-eeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461 176 ETGKLLKESDKETGHK-KTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 176 ~~~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (326)
+-. .+..+. +|. ..+..++.+++...++|++.|+.+++||+..
T Consensus 246 ~~~-~l~~y~---~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 NGT-QLEVYD---EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccc-eehhhh---hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 533 333332 343 4588899999999999999999999998754
No 247
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.31 E-value=2.2e-11 Score=106.23 Aligned_cols=254 Identities=15% Similarity=0.229 Sum_probs=165.1
Q ss_pred eeEEEEccCC---CEEEeecCCCCeEEEecCCC---CeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCc
Q 020461 13 LTYLKYNKDG---DLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 13 i~~~~~s~~~---~~l~s~~~d~~v~iw~~~~~---~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~ 85 (326)
+..+.|+|.. ..+++.+. ..-.+|++... ..-..+.+|..+|..+.|+|.. ..+++++.|-.+..||++...
T Consensus 70 vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 5677888753 35666655 45568987643 2333567899999999999865 478999999999999997643
Q ss_pred EE-EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461 86 QL-FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (326)
Q Consensus 86 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 164 (326)
.. ..+. .| .+.-..+.|+-....++..
T Consensus 149 ~p~ys~~--------------------------------~w--------------------~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 149 RPFYSTS--------------------------------SW--------------------RSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred cceeeee--------------------------------cc--------------------cccCceeeecccCcchhhh
Confidence 21 1100 00 0112234455444456666
Q ss_pred eCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCc--ceEEEEeeccceEEEEeC
Q 020461 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTL--ELIKTYVTERPVNAVTMS 241 (326)
Q Consensus 165 ~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~s 241 (326)
+....|++||++.|...... ..+|-..+..+++.. --..+.+.+.|++|++||.... +..+......++.--.+.
T Consensus 177 shg~~i~vwd~r~gs~pl~s--~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGSTPLCS--LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL 254 (1081)
T ss_pred ccCCceEEEeccCCCcceEE--ecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence 77778999999877654322 234777777777654 2446889999999999998753 333333445566667788
Q ss_pred CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc----------eEEeecCCCc
Q 020461 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK----------SFSSGGEDGY 311 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~----------~lat~s~Dg~ 311 (326)
|.++..++-...++..+-..+.+....+...++. ..+++.+.||...|....|-..+. .|+|=|.|.+
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~--~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~ 332 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL--NTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT 332 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccC--CcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence 8888777665555443333332222212222222 345778899999998877754222 5999999999
Q ss_pred EEEeecCCCcee
Q 020461 312 VRLHHFDPDYFN 323 (326)
Q Consensus 312 i~l~~~~~~~~~ 323 (326)
+|+|.+++..++
T Consensus 333 lrlWpI~~~i~~ 344 (1081)
T KOG0309|consen 333 LRLWPIDSQIQR 344 (1081)
T ss_pred eEeeeccHHHHH
Confidence 999999987654
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.31 E-value=9.7e-10 Score=86.16 Aligned_cols=168 Identities=15% Similarity=0.155 Sum_probs=104.9
Q ss_pred EEeccCccceeEEEEecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEE
Q 020461 140 LILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKL 217 (326)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~i 217 (326)
..++.|+-++.-+.|+... +.+.+||+|+.+..||++..+.. ......-|...|.++..+| .+.+++||+.|..|++
T Consensus 159 q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~ 237 (339)
T KOG0280|consen 159 QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV 237 (339)
T ss_pred ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-eeecceeeecceEEEecCCCCCceEEEeccccceee
Confidence 3456777777777776544 47789999999999999833211 1122335778899987765 5789999999999999
Q ss_pred eecC-CcceEEEEeeccceEEEEeCCCCCeeEEec-CCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEE
Q 020461 218 WDAR-TLELIKTYVTERPVNAVTMSPLLDHVVLGG-GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 295 (326)
Q Consensus 218 wd~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 295 (326)
||.| .++++..-....-|.-+..+|...+.+++. .-.+..+.........+.+ .+...+.|.+-+..-.
T Consensus 238 ~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~---------~~~s~~~hdSl~YG~D 308 (339)
T KOG0280|consen 238 LDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQI---------VLPSDKIHDSLCYGGD 308 (339)
T ss_pred eehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchhe---------eeeccccccceeeccc
Confidence 9999 577776655556677788888766443322 1122111111111111111 1223455665555555
Q ss_pred ECCCCceEEeecC-CCcEE-Eeec
Q 020461 296 FNPDGKSFSSGGE-DGYVR-LHHF 317 (326)
Q Consensus 296 ~s~d~~~lat~s~-Dg~i~-l~~~ 317 (326)
|..--..||||+- |..++ +|-.
T Consensus 309 Wd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 309 WDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred cccccceeeeeeccccceeeeeee
Confidence 5433467899875 77755 6643
No 249
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.31 E-value=4.4e-10 Score=103.42 Aligned_cols=224 Identities=17% Similarity=0.186 Sum_probs=144.0
Q ss_pred EecCCCCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCcEE-EEEecCCCcceeeeecCCeEEEEEcCc
Q 020461 37 WFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQL-FTFNFDSPARSVDFAVGDKLAVITTDP 114 (326)
Q Consensus 37 w~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (326)
|+. .|.++..+.+|...|..++.+++. .+|+|||.||+||+||.+.-..- .++
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~------------------------ 1088 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSA------------------------ 1088 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCccee------------------------
Confidence 653 678899999999999998887654 89999999999999998642100 000
Q ss_pred cceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCC--cccc---ccccccC
Q 020461 115 FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG--KLLK---ESDKETG 189 (326)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~---~~~~~~~ 189 (326)
....++.-..+++.++...+.+..++.++.||.|++.++... +... .......
T Consensus 1089 ----------------------rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~ 1146 (1431)
T KOG1240|consen 1089 ----------------------RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK 1146 (1431)
T ss_pred ----------------------eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeeccccc
Confidence 000001112345666677777889999999999999998652 1110 0111111
Q ss_pred cceeeEEE-EEcC-CCC-eEEEEeCCCeEEEeecCCcceEEEEee---ccceEEEEeCCCCCeeEEecCCCcceeEeecc
Q 020461 190 HKKTITSL-AKAA-DGS-HFLTGSLDKSAKLWDARTLELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 263 (326)
Q Consensus 190 h~~~v~~v-~~s~-~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~ 263 (326)
..+.+.++ ++.. .++ .++.+..-+.|..||+++..-...... .+.+.+++.+|.+..+++|...+. +..||.
T Consensus 1147 ~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~--l~lWDL 1224 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ--LVLWDL 1224 (1431)
T ss_pred CCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCce--EEEEEe
Confidence 22334443 3332 234 788888889999999998665544432 357999999999998887655443 556676
Q ss_pred cCceeeeEeecccceeeeccccccCcceeEEEECCCCc---e-EEeec-CCCcEEEeecCCC
Q 020461 264 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK---S-FSSGG-EDGYVRLHHFDPD 320 (326)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~---~-lat~s-~Dg~i~l~~~~~~ 320 (326)
|.+.. +.-|. .++..+|+.|..+|-.+ . +++++ ..+.|.+|++...
T Consensus 1225 RF~~~-i~sw~----------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1225 RFRVP-ILSWE----------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred ecCce-eeccc----------CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 65432 11111 23456788877776433 3 44455 6889999998765
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=2.9e-09 Score=93.87 Aligned_cols=216 Identities=14% Similarity=0.041 Sum_probs=124.6
Q ss_pred eEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC---CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEE
Q 020461 34 PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI 110 (326)
Q Consensus 34 v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (326)
+.++|...++ ...+..+...+....|+|||+.|+..+.+ ..|.+||+.+++......
T Consensus 181 l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~------------------- 240 (430)
T PRK00178 181 LQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN------------------- 240 (430)
T ss_pred EEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-------------------
Confidence 5566665443 34455667789999999999988766543 246777877654321100
Q ss_pred EcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCC--cEEEEECCCCccccccccc
Q 020461 111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDA--IVRIWDTETGKLLKESDKE 187 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~--~i~~wd~~~~~~~~~~~~~ 187 (326)
.. +......|+|+++.|+ +...++ .|.+||+.+++... +.
T Consensus 241 -------------------------------~~---g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt-- 283 (430)
T PRK00178 241 -------------------------------FE---GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT-- 283 (430)
T ss_pred -------------------------------CC---CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cc--
Confidence 00 1122367899998776 444444 58888998775432 22
Q ss_pred cCcceeeEEEEEcCCCCeEEEEeC-CC--eEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeeccc
Q 020461 188 TGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 264 (326)
Q Consensus 188 ~~h~~~v~~v~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~ 264 (326)
.+........|+|||+.++..+. ++ .|+++|+.+++..+-...........++|+++.++.....++
T Consensus 284 -~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~--------- 353 (430)
T PRK00178 284 -NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG--------- 353 (430)
T ss_pred -cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC---------
Confidence 23444567789999998876654 33 577788877764332222222334678999988876643322
Q ss_pred CceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecC-CCcEEEeecCCC
Q 020461 265 AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE-DGYVRLHHFDPD 320 (326)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~-Dg~i~l~~~~~~ 320 (326)
.+.+..++...++.. .+. +........|+|||++++..+. +|.-+|+.++.+
T Consensus 354 --~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 354 --NFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred --ceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 122333333222111 111 1112235689999999876654 455555544443
No 251
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3e-09 Score=90.39 Aligned_cols=285 Identities=13% Similarity=0.175 Sum_probs=164.0
Q ss_pred CceeEEEEccCCCEEEeec-----------CCCCeEEEecCCCCeeeeccCc--ccceEE-EEEcCCCCeEEEEeCCCcE
Q 020461 11 RPLTYLKYNKDGDLLFSCA-----------KDHTPTVWFADNGERLGTYRGH--NGAVWC-CDVSRDSMTLITGSADQTA 76 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~-----------~d~~v~iw~~~~~~~~~~~~~h--~~~V~~-~~~~~~~~~l~s~~~d~~i 76 (326)
..|..+.|||.-+||+|=| .-..++|||+.+|...+.|... ...++- ..||.|++++|--..+ +|
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-si 328 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SI 328 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eE
Confidence 3578999999999999854 2268899999999998888763 334553 5799999998876665 68
Q ss_pred EEEEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461 77 KLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (326)
.+|+.....++-.-.. ...+...+|+|.+.+++..+........+..+-.+.. +..++.-.-++-.=-.+-|.
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs------~~~iRt~nlfnVsDckLhWQ 402 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS------KREIRTKNLFNVSDCKLHWQ 402 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc------cceeeeccceeeeccEEEec
Confidence 8998755322211111 2345667788887777665433222222221111111 11111111111111124455
Q ss_pred cCCcEEEE----------eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC---CCeEEEeecCC
Q 020461 156 PLNRTIIS----------AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDART 222 (326)
Q Consensus 156 ~~~~~l~s----------~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~---dg~i~iwd~~~ 222 (326)
..|.+|+. .|.=..+.|+.++.....-.. ..-...|...+|.|.|+.+++-+. ..++.+|-+++
T Consensus 403 k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~---velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 403 KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV---VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee---eecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 55555543 122223556665543321111 123567899999999998876553 45788887763
Q ss_pred ----cceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee-eeccccccCcceeEEEEC
Q 020461 223 ----LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE-EIGGVKGHFGPINALAFN 297 (326)
Q Consensus 223 ----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~s 297 (326)
...+..+.. ...+.+.|+|.|..+++++-.. ....+++++..... .......|. .-+.+.|.
T Consensus 480 ~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s-----------~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWD 546 (698)
T KOG2314|consen 480 NIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVS-----------RRGDLEFYDTDYADLKDTASPEHF-AATEVEWD 546 (698)
T ss_pred CCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecc-----------cccceEEEecchhhhhhccCcccc-ccccceEC
Confidence 233333332 5678999999999988764211 11133444432100 001112342 45789999
Q ss_pred CCCceEEeecCCC------cEEEeecC
Q 020461 298 PDGKSFSSGGEDG------YVRLHHFD 318 (326)
Q Consensus 298 ~d~~~lat~s~Dg------~i~l~~~~ 318 (326)
|.|+|+.|++.-. --+||.|+
T Consensus 547 PtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 547 PTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred CCCCEEEEeeehhhhccccceEEEEee
Confidence 9999999998743 34556554
No 252
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.4e-09 Score=87.62 Aligned_cols=98 Identities=16% Similarity=0.318 Sum_probs=73.5
Q ss_pred CceeEEEEccCCCEEEeec-CCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~-~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 89 (326)
.+|++++|.+||..|++++ .|..|+|||..++.++....---+.+.-+.||||+.+|+.+.-|+..++|+.........
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er 275 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER 275 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc
Confidence 6799999999999999988 578999999999987765544466788899999999999999999999997654332222
Q ss_pred Eec-CCCcceeeeecCCeEE
Q 020461 90 FNF-DSPARSVDFAVGDKLA 108 (326)
Q Consensus 90 ~~~-~~~~~~~~~~~~~~~~ 108 (326)
+.. ...+....|++...+.
T Consensus 276 w~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 276 WILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred eeccCCceeeeeecCCCCEE
Confidence 221 2344455677654433
No 253
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=8.7e-10 Score=88.27 Aligned_cols=274 Identities=14% Similarity=0.191 Sum_probs=159.1
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCC-----eeeeccCcc------------cceEEEEEcCCCC--eEEEEe
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHN------------GAVWCCDVSRDSM--TLITGS 71 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-----~~~~~~~h~------------~~V~~~~~~~~~~--~l~s~~ 71 (326)
+-|.++-|..+|.+|++|..+|.|.++.-.... ...+++.|. ..|+.+.|.++++ .++...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 457899999999999999999999999643322 233444443 3577888987654 677788
Q ss_pred CCCcEEEEEccCCcEEE-EEecC--CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEE-EeccCcc
Q 020461 72 ADQTAKLWNVETGAQLF-TFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGPQG 147 (326)
Q Consensus 72 ~d~~i~~wd~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 147 (326)
.|++|++|-+....... .+... .+...+. .+++-.+.+....-...+.+ .-..|.-
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~--------------------~lr~p~~~~~~~~vea~prRv~aNaHty 165 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTIT--------------------SLRLPVEGRHDLEVEASPRRVYANAHTY 165 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccc--------------------eeeceeeccccceeeeeeeeecccccee
Confidence 99999999886543221 00000 0000000 00000000000000001111 1235677
Q ss_pred ceeEEEEecCCcEEEEeeCCCcEEEEECCCC-ccc--ccccc--ccCcceeeEEEEEcCCC-CeEEEEeCCCeEEEeecC
Q 020461 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETG-KLL--KESDK--ETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDAR 221 (326)
Q Consensus 148 ~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~--~~~~~--~~~h~~~v~~v~~s~~~-~~l~s~s~dg~i~iwd~~ 221 (326)
-|+++.++.++..++++ +|=+|.+|.+.-- +.. ..+.+ ...-...|++.-|+|.. ..++-.+..|+|++.|+|
T Consensus 166 hiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 166 HINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred EeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence 79999999999999876 5778999987521 111 11111 01112457777888863 457778889999999998
Q ss_pred CcceEEE----Ee-e------------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc-eeeecc
Q 020461 222 TLELIKT----YV-T------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEIGG 283 (326)
Q Consensus 222 ~~~~~~~----~~-~------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~ 283 (326)
...+--. +. + -..+..+.|+.+|+.+++- |-. .+++|+..+ ..++..
T Consensus 245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR---Dyl------------tvk~wD~nme~~pv~t 309 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR---DYL------------TVKLWDLNMEAKPVET 309 (433)
T ss_pred hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe---ccc------------eeEEEeccccCCcceE
Confidence 5321100 00 0 1236677888888776642 222 344555422 112222
Q ss_pred cccc------------Ccce---eEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 284 VKGH------------FGPI---NALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 284 ~~~h------------~~~v---~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
+.-| +..| ..++||-++.+++|||.....|++..++.
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 2212 1222 45889999999999999999999886543
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=4e-08 Score=82.34 Aligned_cols=225 Identities=9% Similarity=0.041 Sum_probs=133.6
Q ss_pred EccCCCEEEeecC----------CCCeEEEecCCCCeeeeccCccc-------ceEEEEEcCCCCeEEEEe-C-CCcEEE
Q 020461 18 YNKDGDLLFSCAK----------DHTPTVWFADNGERLGTYRGHNG-------AVWCCDVSRDSMTLITGS-A-DQTAKL 78 (326)
Q Consensus 18 ~s~~~~~l~s~~~----------d~~v~iw~~~~~~~~~~~~~h~~-------~V~~~~~~~~~~~l~s~~-~-d~~i~~ 78 (326)
+|||++.|+.|.. +..|.+||.++.+.+.++.--.. .-...+++|||++|+... . +..|-+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998776665 78999999999999887763111 234678999999988776 3 689999
Q ss_pred EEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCC-CceEEEeccCccce-eEEEEec
Q 020461 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG-GESVLILKGPQGRI-NRAVWGP 156 (326)
Q Consensus 79 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i-~~~~~~~ 156 (326)
.|+.+++.+..+.........-......+. .+.+..... +..+..... ......+.+...++ ..-.|.+
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~-~~~Dg~~~~--------v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~ 203 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFM-HCRDGSLAK--------VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN 203 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEE-EeecCceEE--------EEecCCCceEEeeeeeecCCccccccCCceEc
Confidence 999999887766543211111111122222 222211100 000000000 00000111100000 0013455
Q ss_pred -CCcEEEEeeCCCcEEEEECCCC-----ccccccccc----cCcceeeEEEEEcCCCCeEEEEeC----------CCeEE
Q 020461 157 -LNRTIISAGEDAIVRIWDTETG-----KLLKESDKE----TGHKKTITSLAKAADGSHFLTGSL----------DKSAK 216 (326)
Q Consensus 157 -~~~~l~s~~~d~~i~~wd~~~~-----~~~~~~~~~----~~h~~~v~~v~~s~~~~~l~s~s~----------dg~i~ 216 (326)
++..+....+ |+|.+.|+... +....+... .-....+.-++++++++++..... .+.|.
T Consensus 204 ~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 204 KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 6766665555 99999995432 222111110 012233444899999998887532 25799
Q ss_pred EeecCCcceEEEEeeccceEEEEeCCCCC-eeEEecC
Q 020461 217 LWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGG 252 (326)
Q Consensus 217 iwd~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~ 252 (326)
++|.++++.+..+.....+..++++|++. .++++.+
T Consensus 283 ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 283 VVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred EEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC
Confidence 99999999999998888999999999999 7766543
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=6.7e-09 Score=88.81 Aligned_cols=96 Identities=24% Similarity=0.309 Sum_probs=81.8
Q ss_pred ccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (326)
-+|.++|+++.++.+-..|.+++.|+.+..|+.+.++.++... .-...+.+++++|||..+++|+ ++|++||+++
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ 173 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK---EQKPLVSSLCISPDGKILLTAS--RQIKVLDIET 173 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec---cCCCccceEEEcCCCCEEEecc--ceEEEEEccC
Confidence 3678889999988888899999999999999998877665432 3456788999999999999998 6899999999
Q ss_pred cceEEEEe-eccceEEEEeCCC
Q 020461 223 LELIKTYV-TERPVNAVTMSPL 243 (326)
Q Consensus 223 ~~~~~~~~-~~~~~~~~~~s~~ 243 (326)
++.+..|. +..+++++.|.-.
T Consensus 174 kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 174 KEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ceEEEEecCCCcceEEEEEEEe
Confidence 99999997 4678999888765
No 256
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.9e-09 Score=94.32 Aligned_cols=290 Identities=14% Similarity=0.198 Sum_probs=179.3
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCe---------------eeeccCcccceEEEEEcCCCCeEEEEeCCCc
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER---------------LGTYRGHNGAVWCCDVSRDSMTLITGSADQT 75 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~---------------~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~ 75 (326)
....|+.|+.+..++++|+.||.+++-.+.+... -.++.||.+.|..+.|+.+.+.|-|...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 3468999999999999999999999986653211 1357899999999999998889999999999
Q ss_pred EEEEEccCCcEE---EEEecCCCcceeeee-cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461 76 AKLWNVETGAQL---FTFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (326)
Q Consensus 76 i~~wd~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (326)
|.+|-+-.+.=. ..-+..+.+.+++|. .+.+++.+-.++...+- ...-.++- -..+++. ....
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG-svdGNRIw----------gKeLkg~--~l~h 161 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG-SVDGNRIW----------GKELKGQ--LLAH 161 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE-eeccceec----------chhcchh--eccc
Confidence 999987543210 000112233445554 34555555444332221 11101110 0011111 1335
Q ss_pred EEEecCCcEEEEeeCCCcEEEEECCCCcccccccc------c---cCcceeeEEEEE--------cCCCCeEEEEeCCCe
Q 020461 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK------E---TGHKKTITSLAK--------AADGSHFLTGSLDKS 214 (326)
Q Consensus 152 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------~---~~h~~~v~~v~~--------s~~~~~l~s~s~dg~ 214 (326)
+.|+++.+.++.+-.+|.+.++|.... ....+.. . ......+-.+.| -||...|+.+..+|.
T Consensus 162 v~ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 162 VLWSEDLEQALFKKANGETHLYDNQGN-FERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred eeecccHHHHHhhhcCCcEEEeccccc-HHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 789999998888989999999996421 1111110 0 001112333333 368889999999999
Q ss_pred EEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEE
Q 020461 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 294 (326)
Q Consensus 215 i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 294 (326)
++|-.-.+-..-.-+..+-.+....|+++|..++++|.+... +.......+.++.. .++.++.++-....|+.+
T Consensus 241 ~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da-----~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~l 314 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDA-----DEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGL 314 (1189)
T ss_pred ehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccc-----cCccccceEEEecc-chhheEEEecCCceeeee
Confidence 888754432222223334567788899999988887654321 11112223445443 345555666666789999
Q ss_pred EECCCCceEEeecCCCcEEEeecCCCc
Q 020461 295 AFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 295 ~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
+|-..|-.+|- ..|++|.+=+++|+|
T Consensus 315 sWEg~gLriA~-AvdsfiyfanIRP~y 340 (1189)
T KOG2041|consen 315 SWEGTGLRIAI-AVDSFIYFANIRPEY 340 (1189)
T ss_pred EEcCCceEEEE-EecceEEEEeecccc
Confidence 99765555554 459999999999987
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1e-08 Score=90.37 Aligned_cols=217 Identities=12% Similarity=0.027 Sum_probs=120.4
Q ss_pred CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC-CC--cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEE
Q 020461 33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109 (326)
Q Consensus 33 ~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (326)
.+.++|....+ ...+..+...+....|+|||+.|+-.+. ++ .|.+||+.+++......
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~------------------ 259 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS------------------ 259 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC------------------
Confidence 45555654333 2344455678889999999998876553 33 36666776654321100
Q ss_pred EEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE-eeCCCc--EEEEECCCCcccccccc
Q 020461 110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-AGEDAI--VRIWDTETGKLLKESDK 186 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~~d~~--i~~wd~~~~~~~~~~~~ 186 (326)
..+ ......|+|+++.|+. .+.++. |.++|+.+++... +.
T Consensus 260 --------------------------------~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt- 302 (448)
T PRK04792 260 --------------------------------FPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-IT- 302 (448)
T ss_pred --------------------------------CCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-Cc-
Confidence 001 1123579999987764 555664 7777887765432 22
Q ss_pred ccCcceeeEEEEEcCCCCeEEEEeC-CC--eEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecc
Q 020461 187 ETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 263 (326)
Q Consensus 187 ~~~h~~~v~~v~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~ 263 (326)
.+........|+|||+.++..+. ++ .|.++|+.+++..+-..........+++|+++.++.......
T Consensus 303 --~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g-------- 372 (448)
T PRK04792 303 --RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNG-------- 372 (448)
T ss_pred --cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCC--------
Confidence 23345567899999998876654 33 467778877764332112222334689999998876543222
Q ss_pred cCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecC-CCcEEEeecCCC
Q 020461 264 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE-DGYVRLHHFDPD 320 (326)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~-Dg~i~l~~~~~~ 320 (326)
...+..++...+.. ..+... .......|+|||++|+..+. +|.-.||.++.+
T Consensus 373 ---~~~I~~~dl~~g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 373 ---KFNIARQDLETGAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred ---ceEEEEEECCCCCe-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 11222222211111 111111 11224579999998766554 454445544433
No 258
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.22 E-value=8.3e-09 Score=86.84 Aligned_cols=287 Identities=19% Similarity=0.312 Sum_probs=166.7
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCC---------------
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--------------- 74 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~--------------- 74 (326)
.-++.+++|||.|.+|++...- -|.+|.......+..+. ...|.-+.|+|.+++|.+=+...
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred CcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 4467899999999999987665 56889877666554443 45789999999999999866543
Q ss_pred cEEEEEccCCcEEEEEecCCCc----ceeeeecCCeEEEEEcCccceece--------------eeeeeeeccCCCCC--
Q 020461 75 TAKLWNVETGAQLFTFNFDSPA----RSVDFAVGDKLAVITTDPFMELNS--------------AIHVKRIARDPADQ-- 134 (326)
Q Consensus 75 ~i~~wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-- 134 (326)
.+.+||+.++..+..+...... .-+.|+.+++.++-.....+.+.. ...+.+....+...
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~ 188 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHD 188 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCc
Confidence 3899999999888777543221 123444444332211100000000 00000000000000
Q ss_pred -----------CCceEEEeccCccce-----------eEEEEecCCcEEEEe------e-----CCCcEEEEECCCCccc
Q 020461 135 -----------GGESVLILKGPQGRI-----------NRAVWGPLNRTIISA------G-----EDAIVRIWDTETGKLL 181 (326)
Q Consensus 135 -----------~~~~~~~~~~~~~~i-----------~~~~~~~~~~~l~s~------~-----~d~~i~~wd~~~~~~~ 181 (326)
....+..+.-+.+.+ -.+.|++.|.+++.- + ....+.|++++.....
T Consensus 189 ~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~ 268 (561)
T COG5354 189 ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP 268 (561)
T ss_pred eEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc
Confidence 001111111111111 145677888765531 1 1234677777633221
Q ss_pred cccccccCcceeeEEEEEcCCCCeEEE--EeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeE
Q 020461 182 KESDKETGHKKTITSLAKAADGSHFLT--GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVT 259 (326)
Q Consensus 182 ~~~~~~~~h~~~v~~v~~s~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 259 (326)
...+-.++|...+|.|.++.+++ |..+..+-++|++.. +..+.++..-+-+.|+|..+..+++|-..
T Consensus 269 ----V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~n----- 337 (561)
T COG5354 269 ----VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDN----- 337 (561)
T ss_pred ----eeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCc-----
Confidence 11234578999999999887665 457888999999876 56666777888999999998877764321
Q ss_pred eecccCceeeeEeecccceeeec-cccccCcceeEEEECCCCceEEeec--C----CCcEEEeecC
Q 020461 260 TTDHRAGKFEAKFFDKILQEEIG-GVKGHFGPINALAFNPDGKSFSSGG--E----DGYVRLHHFD 318 (326)
Q Consensus 260 ~~d~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~s~d~~~lat~s--~----Dg~i~l~~~~ 318 (326)
.. ..+.+|+....-.+. .+.+ ....-+.|+||+.++-+.- . |..|+||++-
T Consensus 338 ----l~--gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 338 ----LQ--GNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred ----cc--cceEEeccCCceEEEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 11 123444443222111 2222 2345688999999875553 2 8899999863
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.21 E-value=3.2e-07 Score=76.96 Aligned_cols=259 Identities=14% Similarity=0.096 Sum_probs=134.3
Q ss_pred CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC----------CCcEEEEEccCCcEEEEEecCCCcc----
Q 020461 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA----------DQTAKLWNVETGAQLFTFNFDSPAR---- 97 (326)
Q Consensus 32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~----------d~~i~~wd~~~~~~~~~~~~~~~~~---- 97 (326)
++|.+.|..+++.+.++..-..+-. + ++||++.++.+.. +..|.+||..+.+.+..+.......
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999888865333332 4 8999998877666 7899999999999887776533322
Q ss_pred ----eeeeecCCeEEEEEc-CccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe--------
Q 020461 98 ----SVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-------- 164 (326)
Q Consensus 98 ----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-------- 164 (326)
.+.++++++.+.+.. ++.. ...+.++. .++.+..+.- |++..++..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~----~V~VvD~~------~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~ 163 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSP----AVGVVDLE------GKAFVRMMDV-----------PDCYHIFPTANDTFFMH 163 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCC----EEEEEECC------CCcEEEEEeC-----------CCCcEEEEecCCccEEE
Confidence 456677766655443 1111 11111111 1111111111 222222211
Q ss_pred eCCCcEEEEECC-CCccccccccccCcc--eeeEEE-EEcC-CCCeEEEEeCCCeEEEeecCC-----cceEEEEeec--
Q 020461 165 GEDAIVRIWDTE-TGKLLKESDKETGHK--KTITSL-AKAA-DGSHFLTGSLDKSAKLWDART-----LELIKTYVTE-- 232 (326)
Q Consensus 165 ~~d~~i~~wd~~-~~~~~~~~~~~~~h~--~~v~~v-~~s~-~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~-- 232 (326)
+.||......+. +++.... ....-|. ..+..- .+++ +|.++....+ |+|.+-|+.. .+.+..+...
T Consensus 164 ~~Dg~~~~v~~d~~g~~~~~-~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR02658 164 CRDGSLAKVGYGTKGNPKIK-PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK 241 (352)
T ss_pred eecCceEEEEecCCCceEEe-eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccc
Confidence 223333222221 1110000 0000000 000000 2344 7877777776 9999999543 3333222111
Q ss_pred ------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc-eEEe
Q 020461 233 ------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSS 305 (326)
Q Consensus 233 ------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~lat 305 (326)
.-..-++++++++.+++..-... -+.+..+...+..++..+.+.+..+. -...++.|+|+||++ .|.+
T Consensus 242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~----~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyv 316 (352)
T TIGR02658 242 ADGWRPGGWQQVAYHRARDRIYLLADQRA----KWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYA 316 (352)
T ss_pred ccccCCCcceeEEEcCCCCEEEEEecCCc----cccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEE
Confidence 11234899999998887421111 00011111234444444444443332 123689999999999 7765
Q ss_pred ec-CCCcEEEeecCCC
Q 020461 306 GG-EDGYVRLHHFDPD 320 (326)
Q Consensus 306 ~s-~Dg~i~l~~~~~~ 320 (326)
.+ .++.|.+.+....
T Consensus 317 tn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 317 LSTGDKTLYIFDAETG 332 (352)
T ss_pred eCCCCCcEEEEECcCC
Confidence 55 6888999776543
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=3.6e-09 Score=90.41 Aligned_cols=144 Identities=15% Similarity=0.196 Sum_probs=117.0
Q ss_pred cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-ccceEE
Q 020461 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNA 237 (326)
Q Consensus 159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 237 (326)
-.++-|...|.|.+++...++.-..+. ...|.+.|.++.++.+-..|.+++.|+.+-.|+.+....++.+.. ...+.+
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~s-t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s 149 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLS-TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS 149 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEe-cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence 356778889999999998887655443 357999999999999999999999999999999999988888754 456889
Q ss_pred EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC-----CceE-EeecCCCc
Q 020461 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD-----GKSF-SSGGEDGY 311 (326)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d-----~~~l-at~s~Dg~ 311 (326)
++.+|++..+++++. .+++|+....+.+..+.||.++|+++.|--+ |+++ .+...+.-
T Consensus 150 l~is~D~~~l~~as~----------------~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 150 LCISPDGKILLTASR----------------QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred EEEcCCCCEEEeccc----------------eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence 999999888887654 5778888888888899999999999999766 6665 44455666
Q ss_pred EEEeecCC
Q 020461 312 VRLHHFDP 319 (326)
Q Consensus 312 i~l~~~~~ 319 (326)
+.+|..+.
T Consensus 214 i~~w~v~~ 221 (541)
T KOG4547|consen 214 ITVWVVEK 221 (541)
T ss_pred eeEEEEEc
Confidence 77777665
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1.4e-08 Score=88.80 Aligned_cols=180 Identities=14% Similarity=0.118 Sum_probs=103.6
Q ss_pred CceeEEEEccCCCEEEeecC-----CCCeEEEecCCC---CeeeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEEEc
Q 020461 11 RPLTYLKYNKDGDLLFSCAK-----DHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNV 81 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~-----d~~v~iw~~~~~---~~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~ 81 (326)
......+|||||+.|+..+. +-.+.+|++.++ +......++.+.....+|+|||+.|+..+ .++..++|.+
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 34456799999998876542 223334666643 22222333333456789999999776554 5666666643
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
..... +.....+..+...+....|+|+|+.|
T Consensus 311 ~~~~~-------------------------------------------------g~~~~~lt~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 311 QIDPE-------------------------------------------------GQSPRLLTKKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred ECccc-------------------------------------------------ccceEEeccCCCCccceeECCCCCEE
Confidence 21000 00000011112234557899999988
Q ss_pred EEeeCC---CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC---CCeEEEeecCCcceEEEEeeccce
Q 020461 162 ISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDARTLELIKTYVTERPV 235 (326)
Q Consensus 162 ~s~~~d---~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~ 235 (326)
+..+.+ ..|.+||+.+++... +.. ....+....|+|||+.|+..+. ...|.++|+.+++...-.......
T Consensus 342 af~~~~~g~~~I~v~dl~~g~~~~-Lt~---~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~ 417 (428)
T PRK01029 342 AFCSVIKGVRQICVYDLATGRDYQ-LTT---SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEK 417 (428)
T ss_pred EEEEcCCCCcEEEEEECCCCCeEE-ccC---CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcc
Confidence 765443 368999998876532 221 1234567899999998875433 356888898877654333333344
Q ss_pred EEEEeCCC
Q 020461 236 NAVTMSPL 243 (326)
Q Consensus 236 ~~~~~s~~ 243 (326)
...+|+|.
T Consensus 418 ~~p~Ws~~ 425 (428)
T PRK01029 418 RFPSWGAF 425 (428)
T ss_pred cCceecCC
Confidence 55566654
No 262
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=2.8e-10 Score=96.63 Aligned_cols=178 Identities=17% Similarity=0.255 Sum_probs=125.4
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC-------CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCc
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT 75 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~-------~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~ 75 (326)
..-+.||...|..+.--.+.+-++++|.|.+|++|.++. ..+.-++..|+.+|..+.|-.+.+++++ -|+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 345678888887776556677899999999999998752 2456678899999999999888777754 5778
Q ss_pred EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (326)
Q Consensus 76 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (326)
|.+||.--++.+.... +.+ ....+..++.+..
T Consensus 806 iHlWDPFigr~Laq~~---------dap----------------------------k~~a~~~ikcl~n----------- 837 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQME---------DAP----------------------------KEGAGGNIKCLEN----------- 837 (1034)
T ss_pred ceeecccccchhHhhh---------cCc----------------------------ccCCCceeEeccc-----------
Confidence 9999986554432110 000 0001111111111
Q ss_pred cCCc-EEEEeeCCCcEEEEECCCCccccccccc--cCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 156 PLNR-TIISAGEDAIVRIWDTETGKLLKESDKE--TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 156 ~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
-+.. .++.++...+|+++|.+.++...+.... .+....+.+++..+.|+.+++|-.+|.|-+-|.++|..+..+.
T Consensus 838 v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 838 VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 0112 2345578899999999988766554332 4556778999999999999999999999999999999887654
No 263
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.09 E-value=4.9e-07 Score=87.38 Aligned_cols=269 Identities=11% Similarity=0.049 Sum_probs=144.9
Q ss_pred eeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeeccC--cc------------cceEEEEEcCCCCeEEEEe-CCCcE
Q 020461 13 LTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRG--HN------------GAVWCCDVSRDSMTLITGS-ADQTA 76 (326)
Q Consensus 13 i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~--h~------------~~V~~~~~~~~~~~l~s~~-~d~~i 76 (326)
...++++++ +.++++-+.++.|++++.. +..+..+.+ .. ..-..+++.++++.|+.+. ....|
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 356788875 6678888889999999974 444433322 11 1236788888877666655 44678
Q ss_pred EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
+.+|+.++... .+..... ....+ .++.... ...-+....++++|
T Consensus 649 r~id~~~~~V~-tlag~G~-~g~~~--------------------------------~gg~~~~--~~~ln~P~gVa~dp 692 (1057)
T PLN02919 649 REIDFVNETVR-TLAGNGT-KGSDY--------------------------------QGGKKGT--SQVLNSPWDVCFEP 692 (1057)
T ss_pred EEEecCCCEEE-EEeccCc-ccCCC--------------------------------CCChhhh--HhhcCCCeEEEEec
Confidence 88888765422 1110000 00000 0000000 00011224678898
Q ss_pred C-CcEEEEeeCCCcEEEEECCCCcccccccc------ccC------cceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCC
Q 020461 157 L-NRTIISAGEDAIVRIWDTETGKLLKESDK------ETG------HKKTITSLAKAADGS-HFLTGSLDKSAKLWDART 222 (326)
Q Consensus 157 ~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------~~~------h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~ 222 (326)
+ +..+++...++.|++||..++... .+.. ..+ .-.....++++|++. .+++.+.++.|++||+++
T Consensus 693 ~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t 771 (1057)
T PLN02919 693 VNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT 771 (1057)
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 4 556677788899999998766432 1100 001 112356789999988 455666789999999987
Q ss_pred cceEEEEee----------------------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceee
Q 020461 223 LELIKTYVT----------------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 280 (326)
Q Consensus 223 ~~~~~~~~~----------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 280 (326)
+........ -....+++++++++..++-.++ ..+..+|...+......-....+-.
T Consensus 772 g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N--~rIrviD~~tg~v~tiaG~G~~G~~ 849 (1057)
T PLN02919 772 GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN--HKIKKLDPATKRVTTLAGTGKAGFK 849 (1057)
T ss_pred CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC--CEEEEEECCCCeEEEEeccCCcCCC
Confidence 653211000 0123467777776533332221 1222233222211100000000000
Q ss_pred e-ccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 281 I-GGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 281 ~-~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
- ....+.......|+++++|+.+++.+.+++|++|+.+...
T Consensus 850 dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 850 DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 0 0011222356789999999999999999999999987653
No 264
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.08 E-value=1.3e-06 Score=74.59 Aligned_cols=196 Identities=14% Similarity=0.170 Sum_probs=119.3
Q ss_pred CceeEEEEccCCCEEEeec-CCCCeEEEecCC-CCeeee---cc----------CcccceEEEEEcCCCCeEEEEe-CCC
Q 020461 11 RPLTYLKYNKDGDLLFSCA-KDHTPTVWFADN-GERLGT---YR----------GHNGAVWCCDVSRDSMTLITGS-ADQ 74 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~-~d~~v~iw~~~~-~~~~~~---~~----------~h~~~V~~~~~~~~~~~l~s~~-~d~ 74 (326)
....+++++|++++|+++. .+|+|.++++.. +..... +. .-.....++.++|+++++++.. ...
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 3446899999999888876 689999999976 333221 11 1123467889999999887765 344
Q ss_pred cEEEEEccCCcE-EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461 75 TAKLWNVETGAQ-LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (326)
Q Consensus 75 ~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (326)
.|.+|+++.... +... .. + . .........++
T Consensus 167 ~v~~~~~~~~~~~l~~~-----------------------------~~-----~-------------~-~~~G~GPRh~~ 198 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPV-----------------------------DS-----I-------------K-VPPGSGPRHLA 198 (345)
T ss_dssp EEEEEEE-TTS-TEEEE-----------------------------EE-----E-------------E-CSTTSSEEEEE
T ss_pred EEEEEEEeCCCceEEEe-----------------------------ec-----c-------------c-cccCCCCcEEE
Confidence 688888765431 1000 00 0 0 01123356788
Q ss_pred EecCCcEEEE-eeCCCcEEEEECC--CCccc--cccc---cccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecC--C
Q 020461 154 WGPLNRTIIS-AGEDAIVRIWDTE--TGKLL--KESD---KETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDAR--T 222 (326)
Q Consensus 154 ~~~~~~~l~s-~~~d~~i~~wd~~--~~~~~--~~~~---~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~--~ 222 (326)
|+|++++++. .-.+++|.++++. +++.. ..+. ...........+.++|||++|.++. ..++|.++++. +
T Consensus 199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~ 278 (345)
T PF10282_consen 199 FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT 278 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC
Confidence 9999887754 4558889999887 33221 1111 1111112567889999999988766 46789999983 2
Q ss_pred c--ceEEEEee-ccceEEEEeCCCCCeeEEecCCC
Q 020461 223 L--ELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 223 ~--~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~ 254 (326)
+ +.+..+.. ....+.++++|+++.++++...+
T Consensus 279 g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 279 GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence 3 33334444 34488999999999988875433
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.06 E-value=3.4e-09 Score=86.58 Aligned_cols=86 Identities=23% Similarity=0.349 Sum_probs=71.7
Q ss_pred eccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (326)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~ 221 (326)
+.||-+.+..++++||++.|+++..|..|++-....-..+..+ ..||..-|..++.-++. .|++||-|++|++||++
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf--clGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF--CLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDIT 223 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh--ccccHhheeeeeeccCc-eeeecCCCCcEEEEecc
Confidence 4588899999999999999999999999998766543333322 35899999999987765 48999999999999999
Q ss_pred CcceEEEEe
Q 020461 222 TLELIKTYV 230 (326)
Q Consensus 222 ~~~~~~~~~ 230 (326)
+++++.++.
T Consensus 224 sgk~L~t~d 232 (390)
T KOG3914|consen 224 SGKLLDTCD 232 (390)
T ss_pred cCCcccccc
Confidence 999987764
No 266
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.06 E-value=1.7e-09 Score=103.23 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=132.7
Q ss_pred cCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCC--cc
Q 020461 20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP--AR 97 (326)
Q Consensus 20 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~~ 97 (326)
+.++.......++...-|..+-+.. .++.+-..|.++.-+|...+-+||+.||.|++|....+..++.++..++ +.
T Consensus 2178 ~~s~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2178 SFSNRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred cccccCCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence 3455565666667766665443332 2345566788888888888899999999999999999988888765333 33
Q ss_pred eeeee-cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe---eCCCcEEEE
Q 020461 98 SVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA---GEDAIVRIW 173 (326)
Q Consensus 98 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~---~~d~~i~~w 173 (326)
.+.|. .++++.++..++.+.+ |.. +..+....+.|+......+|-. ..++++ +.++.+.+|
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l------~q~-------~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lw 2320 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSL------WQA-------SPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLW 2320 (2439)
T ss_pred hhhhcccCCceeeeccCCceee------ccc-------CCcceeccccCCccccceeeee--hhhhccccCCCCCcccch
Confidence 33343 3556655555443322 222 1346667788888777777755 445554 446789999
Q ss_pred ECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 174 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
|..-.....-+. ..|.+.++++++-|..+.|++|+.+|.|++||++..+..+.+.
T Consensus 2321 Dtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2321 DTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred hcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence 975432222222 5799999999999999999999999999999999877766654
No 267
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.02 E-value=7e-10 Score=61.95 Aligned_cols=38 Identities=32% Similarity=0.576 Sum_probs=36.2
Q ss_pred CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461 43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (326)
Q Consensus 43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd 80 (326)
+++.++++|.+.|++++|+|++++|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57788999999999999999999999999999999997
No 268
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.00 E-value=1.3e-06 Score=82.96 Aligned_cols=293 Identities=16% Similarity=0.176 Sum_probs=161.2
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEE----ecCCC--CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVW----FADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw----~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
.+.|..+.|-++...+..+..+|.|.+. +..+. +.+.. -...|.+.+||||.+.|+....++++-+-+- +
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~---vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~ 150 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS---VDSGILAASWSPDEELLALVTGEGNLLLMTR-D 150 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE---EcCcEEEEEECCCcCEEEEEeCCCEEEEEec-c
Confidence 3568899999999989899999999998 43332 22332 3557999999999999999888888765532 1
Q ss_pred CcEEEEE----------------------ecCC---------------------------CcceeeeecCCeEEEEEcC-
Q 020461 84 GAQLFTF----------------------NFDS---------------------------PARSVDFAVGDKLAVITTD- 113 (326)
Q Consensus 84 ~~~~~~~----------------------~~~~---------------------------~~~~~~~~~~~~~~~~~~~- 113 (326)
.+.+... +|++ ....++|..++.+++++.-
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 1111100 1110 1112223333333333211
Q ss_pred ccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC---CCcEEEEECCCCccccccccc-cC
Q 020461 114 PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRIWDTETGKLLKESDKE-TG 189 (326)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~-~~ 189 (326)
+.......++++ .+ .|....+.+.-.+--..++|.|.|.+|++... ...|.+|..+ |-...++... ..
T Consensus 231 ~~~~~~R~iRVy--~R-----eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~ 302 (928)
T PF04762_consen 231 PETGSRRVIRVY--SR-----EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDP 302 (928)
T ss_pred cCCCceeEEEEE--CC-----CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCC
Confidence 110000111111 11 12222222211222346889999999998754 4457777654 3222222211 13
Q ss_pred cceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc-e-EEEEe--eccceEEEEeCCCCCeeE-EecCCCcc--------
Q 020461 190 HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-L-IKTYV--TERPVNAVTMSPLLDHVV-LGGGQDAS-------- 256 (326)
Q Consensus 190 h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~-~-~~~~~--~~~~~~~~~~s~~~~~~~-~~~~~~~~-------- 256 (326)
....|..+.|++|+..||....|. |++|-..+.. . .+++. ....+..+.|+|.....+ +....+..
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence 456799999999999999988665 9999988764 1 12222 223345588888755422 22221221
Q ss_pred -------------eeEeecccCceeeeEeec--cc-ceee--eccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 257 -------------AVTTTDHRAGKFEAKFFD--KI-LQEE--IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 257 -------------~~~~~d~~~~~~~~~~~~--~~-~~~~--~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
.+...|+.. +.+-. .. .+.+ ...+ .-..+|++++|++++..+|+-..||+|.+|.++
T Consensus 382 v~~s~~~~~~D~g~vaVIDG~~----lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 382 VSRSPGSSPNDNGTVAVIDGNK----LLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred EEecCCCCccCceEEEEEeCCe----EEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 111122111 00000 00 0000 0001 134689999999999889999999999998865
Q ss_pred CC
Q 020461 319 PD 320 (326)
Q Consensus 319 ~~ 320 (326)
..
T Consensus 457 ~~ 458 (928)
T PF04762_consen 457 LK 458 (928)
T ss_pred CC
Confidence 43
No 269
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=2.3e-09 Score=91.21 Aligned_cols=208 Identities=19% Similarity=0.302 Sum_probs=132.4
Q ss_pred eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461 46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125 (326)
Q Consensus 46 ~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
..|.||+..|..++--.+.+-+++++.|++||+|.++.... .
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD-------~------------------------------- 770 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD-------E------------------------------- 770 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC-------c-------------------------------
Confidence 34678998888776555667899999999999999864210 0
Q ss_pred eeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcc--eeeEEEEEcCCC
Q 020461 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADG 203 (326)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~ 203 (326)
.....+..+...|..+|+++-|-.+.+++++ .||.|.+||.--++.+..+.....|. +.|.++- +-+.
T Consensus 771 -------~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~ 840 (1034)
T KOG4190|consen 771 -------IGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDR 840 (1034)
T ss_pred -------cccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcc
Confidence 0011233445567778888888777666665 58899999987777766544333332 3333332 2244
Q ss_pred CeEEEE-eCCCeEEEeecCCcceEEEEeec------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc
Q 020461 204 SHFLTG-SLDKSAKLWDARTLELIKTYVTE------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI 276 (326)
Q Consensus 204 ~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 276 (326)
..+++| +...+++++|.++.+-+.++... ..+.+++..+.|+.++++-+++ .+...|.|.+.. +.-|...
T Consensus 841 ~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG--ci~~LDaR~G~v-INswrpm 917 (1034)
T KOG4190|consen 841 HILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG--CIAILDARNGKV-INSWRPM 917 (1034)
T ss_pred hheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCC--cEEEEecCCCce-eccCCcc
Confidence 455555 77899999999999888777532 3478999999999887664443 344567666552 2223221
Q ss_pred ceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE-ee
Q 020461 277 LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL-HH 316 (326)
Q Consensus 277 ~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l-~~ 316 (326)
. .....++ .|..+.||....|.++.+ |+
T Consensus 918 e-----------cdllqla-apsdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 918 E-----------CDLLQLA-APSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred c-----------chhhhhc-CchhHHHHhhcccceeEeeeh
Confidence 1 1122233 255566676777777777 54
No 270
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.99 E-value=7.8e-07 Score=70.19 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=49.0
Q ss_pred EEEccCCCEEEeecCCCCeEEEecCCC--CeeeeccCcc---cceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 16 LKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHN---GAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 16 ~~~s~~~~~l~s~~~d~~v~iw~~~~~--~~~~~~~~h~---~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
++.+.+|++||. -.|..|.|-..++. ..+.+..-.. .+=..++||||+..||-+...|+|+++|+...+
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence 456789997775 47778888766553 2233332222 234568999999999999999999999987633
No 271
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.98 E-value=1.4e-09 Score=60.71 Aligned_cols=37 Identities=35% Similarity=0.703 Sum_probs=33.8
Q ss_pred eeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461 280 EIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 280 ~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
.+..+.+|.+.|++|+|+|++.+||||+.|++|++|+
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3455789999999999999999999999999999996
No 272
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.93 E-value=3.8e-07 Score=71.10 Aligned_cols=226 Identities=14% Similarity=0.028 Sum_probs=134.9
Q ss_pred CCEEEeecCCCCeEEEecCCCCe-eeeccCcccceEEEE-EcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCccee
Q 020461 22 GDLLFSCAKDHTPTVWFADNGER-LGTYRGHNGAVWCCD-VSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSV 99 (326)
Q Consensus 22 ~~~l~s~~~d~~v~iw~~~~~~~-~~~~~~h~~~V~~~~-~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 99 (326)
--+||.|++.|...+|...+.+. .+....|...|.-+. .....-.+..++.|.++|+.+++.+.....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~---------- 153 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA---------- 153 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce----------
Confidence 34788899999999998876543 344445555443221 111122467788888888887754322100
Q ss_pred eeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCc--cceeEEEEecCCcEEEEeeCCCcEEEEECCC
Q 020461 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ--GRINRAVWGPLNRTIISAGEDAIVRIWDTET 177 (326)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 177 (326)
.|. -..+++.++++++++++.++...|..|.+..
T Consensus 154 --------------------------------------------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 154 --------------------------------------------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred --------------------------------------------eeccccceeeeEEcCCCceEEEecCCCcceEEEeCC
Confidence 011 1256788999999999999999999998854
Q ss_pred C-ccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe------eccceEEEEeCCCCCe--eE
Q 020461 178 G-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV------TERPVNAVTMSPLLDH--VV 248 (326)
Q Consensus 178 ~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~~s~~~~~--~~ 248 (326)
. +.+.. .....-+..-.+..|+.+...+|++..||++.|||+|......... +.+.+..+-|++.+.. ++
T Consensus 190 ~sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf 268 (344)
T KOG4532|consen 190 ESEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLF 268 (344)
T ss_pred ccceeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEE
Confidence 3 22221 1111223334677899999999999999999999998754332221 3456888888875543 33
Q ss_pred EecCCCcceeEeecccCceeeeEeecccceeeeccccccCcc-eeEEEECCCCceEEeecCC
Q 020461 249 LGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-INALAFNPDGKSFSSGGED 309 (326)
Q Consensus 249 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~v~~s~d~~~lat~s~D 309 (326)
.+ +.-..+...|.|.+.-...+.-.. . ....|... |..-.|+.++....+.+++
T Consensus 269 ~s--Ehfs~~hv~D~R~~~~~q~I~i~~-d----~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 269 IS--EHFSRVHVVDTRNYVNHQVIVIPD-D----VERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred Ee--cCcceEEEEEcccCceeeEEecCc-c----ccccccccccccccccCCCcccccccch
Confidence 33 333344556666554322111100 0 12234433 6777777766665555544
No 273
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.2e-08 Score=83.20 Aligned_cols=214 Identities=17% Similarity=0.223 Sum_probs=142.2
Q ss_pred cCCceeEEEEccCCCEEEeecCCCCeEEEecCC---CCeeeeccCcccceEEEEEcCCCCeEEEEeC-CCcEEEEEccCC
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVETG 84 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~---~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~ 84 (326)
|.+.|+.+. ..-.+++.+++.||.++.|.-.. -+.+..+..|-+.|.+++.+.++..+.|.+. |..+|++|+..-
T Consensus 8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 677776654 34578999999999999996433 2556778899999999999999999999777 999999998765
Q ss_pred cEEEEEecCCCcceeee--ecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 85 AQLFTFNFDSPARSVDF--AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 85 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
..+.-+........+.| .+++....+..+.+ -+..+.+. +......+....-+-|.++|.++.+.|.+..++
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~--~sg~i~Vv----D~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLF--KSGKIFVV----DGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecc--cCCCcEEE----CCcCCcCccceecccccCceEEEEeecccccee
Confidence 43322222222222222 34444332221110 00111111 111112233444566889999999999999999
Q ss_pred EeeCCCcEEEEECCC-Cccccc-ccc----------ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461 163 SAGEDAIVRIWDTET-GKLLKE-SDK----------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (326)
Q Consensus 163 s~~~d~~i~~wd~~~-~~~~~~-~~~----------~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (326)
+....|.|.-|..+. -+.... +.. ..-......++.++|++..+.+-+.|..|++++.++++.++.+
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 999999999998762 111111 111 1122456789999999999999999999999999998766654
No 274
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=3.7e-06 Score=72.10 Aligned_cols=271 Identities=16% Similarity=0.239 Sum_probs=160.5
Q ss_pred eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC-----------CcEEEEEcc
Q 020461 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-----------QTAKLWNVE 82 (326)
Q Consensus 14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d-----------~~i~~wd~~ 82 (326)
+.+.|||.|.||+|=-.-|. .+|--++-..++.|. |. .|.-++|||..+||+|-|.. ..+.+||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI-~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGI-ALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccce-eeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 68999999999999877654 689766555555552 33 57889999999999997642 568999999
Q ss_pred CCcEEEEEecC-C--Cc-ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc---CccceeEEEEe
Q 020461 83 TGAQLFTFNFD-S--PA-RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG---PQGRINRAVWG 155 (326)
Q Consensus 83 ~~~~~~~~~~~-~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~ 155 (326)
+|.....|... . .. .-+.|+.+++.++......+.+...-. ...+.+ .-..|....|+
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps---------------f~lld~Kslki~gIr~Fsws 355 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS---------------FMLLDKKSLKISGIRDFSWS 355 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCc---------------eeeecccccCCccccCcccC
Confidence 99887766541 1 11 234678888887765443222211110 111111 12456777889
Q ss_pred cCCcEEEEee--CC---CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe----------CCCeEEEeec
Q 020461 156 PLNRTIISAG--ED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS----------LDKSAKLWDA 220 (326)
Q Consensus 156 ~~~~~l~s~~--~d---~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s----------~dg~i~iwd~ 220 (326)
|.+..||.=. .+ .++.+-.+.+++.+++... |.-.=+.+-|-.+|.+|..-- .=..+.|+.+
T Consensus 356 P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl---fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 356 PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL---FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred CCcceEEEEcccccCCcceEEEEecCccceeeeccc---eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 9877776421 11 2456666666655554321 222223455777777776422 1123556665
Q ss_pred CCcce-EEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc----eeeeccccccCcceeEEE
Q 020461 221 RTLEL-IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL----QEEIGGVKGHFGPINALA 295 (326)
Q Consensus 221 ~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~v~ 295 (326)
+..+. +........+-..+|-|.|+.+++-.+.... ..+.+|...+ ...+..+. ....+.+-
T Consensus 433 reKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k-----------~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vf 499 (698)
T KOG2314|consen 433 REKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVK-----------NTVSFYAVETNIKKPSLVKELD--KKFANTVF 499 (698)
T ss_pred eccCCCceeeecchheeeeeeccCCCeEEEEEccccc-----------cceeEEEeecCCCchhhhhhhc--ccccceEE
Confidence 54332 2333344567788899999987765554431 1223332221 11111121 13468899
Q ss_pred ECCCCceEEee---cCCCcEEEeecC
Q 020461 296 FNPDGKSFSSG---GEDGYVRLHHFD 318 (326)
Q Consensus 296 ~s~d~~~lat~---s~Dg~i~l~~~~ 318 (326)
|+|.|++++.+ |..|.+.+.+.+
T Consensus 500 wsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 500 WSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred EcCCCcEEEEEEecccccceEEEecc
Confidence 99999987665 557888885554
No 275
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.85 E-value=3.8e-05 Score=64.95 Aligned_cols=117 Identities=21% Similarity=0.274 Sum_probs=81.8
Q ss_pred CcceeeEEEEEcCCCCeEEEEeCCC-eEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCce
Q 020461 189 GHKKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK 267 (326)
Q Consensus 189 ~h~~~v~~v~~s~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~ 267 (326)
+|...|.=..+..++.-++.|..|| .+-++|.++++..+....-..+.++..+++|..++++ ++...+...|...+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vva--Ndr~el~vididngn 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVA--NDRFELWVIDIDNGN 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEE--cCceEEEEEEecCCC
Confidence 3445555555666777789999999 8999999999876666666789999999999887765 333333333332222
Q ss_pred eeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCC----cEEEeecCC
Q 020461 268 FEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDG----YVRLHHFDP 319 (326)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg----~i~l~~~~~ 319 (326)
.. . + -+...+-|+.++|+|+++++|-+-.+| .|+|++.+.
T Consensus 435 v~--~--------i--dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 435 VR--L--------I--DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ee--E--------e--cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 11 1 1 123446799999999999999998876 567777665
No 276
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.84 E-value=1.9e-07 Score=75.15 Aligned_cols=231 Identities=16% Similarity=0.244 Sum_probs=132.9
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE-EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccC
Q 020461 52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ-LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD 130 (326)
Q Consensus 52 ~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (326)
..-|.++.|...|++|++|..+|.|-++.-..... .+.+... ..+.++.+..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~---------------fqshepEFDY------------ 77 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTE---------------FQSHEPEFDY------------ 77 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeee---------------eeccCcccch------------
Confidence 44688999999999999999999998885432110 0000000 0000000000
Q ss_pred CCCCCCceEEEeccCccceeEEEEecCC--cEEEEeeCCCcEEEEECCCCcccc---------------c--c-------
Q 020461 131 PADQGGESVLILKGPQGRINRAVWGPLN--RTIISAGEDAIVRIWDTETGKLLK---------------E--S------- 184 (326)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~---------------~--~------- 184 (326)
+..+ .-...|+.+.|.+++ ..++...+|.+|++|.+....... . +
T Consensus 78 --------LkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~ 148 (433)
T KOG1354|consen 78 --------LKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHD 148 (433)
T ss_pred --------hhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccc
Confidence 0000 012346667776655 367788899999999875322111 0 0
Q ss_pred ---------ccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe---e------ccceEEEEeCCCCCe
Q 020461 185 ---------DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---T------ERPVNAVTMSPLLDH 246 (326)
Q Consensus 185 ---------~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~------~~~~~~~~~s~~~~~ 246 (326)
....+|..-|.++.+..|+..++++. |=.|-+|++.-...-..+. + ..-+++..|+|....
T Consensus 149 ~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn 227 (433)
T KOG1354|consen 149 LEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN 227 (433)
T ss_pred ceeeeeeeeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc
Confidence 00136888899999999999888876 6679999986432211111 1 123678889998766
Q ss_pred eEEecCCCcceeEeecccCceee---eEeeccc-ceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 247 VVLGGGQDASAVTTTDHRAGKFE---AKFFDKI-LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 247 ~~~~~~~~~~~~~~~d~~~~~~~---~~~~~~~-~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
+++-.+..+ .+...|.|...+. .+++... .+....-+.+-.+-|.++.|+++|+|+++=+ =-+|+||++.++-
T Consensus 228 ~f~YSSSKG-tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~ 304 (433)
T KOG1354|consen 228 VFVYSSSKG-TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEA 304 (433)
T ss_pred EEEEecCCC-cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccC
Confidence 555433322 3445565532221 1222211 1111122233345688999999999998543 2799999996553
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.84 E-value=2.3e-07 Score=74.67 Aligned_cols=211 Identities=16% Similarity=0.206 Sum_probs=137.8
Q ss_pred CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc-cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceece
Q 020461 42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV-ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120 (326)
Q Consensus 42 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
..+.+.++||...|+....-|...-+++.+.|.++|+|-= +.++..-.+.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~----------------------------- 64 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY----------------------------- 64 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-----------------------------
Confidence 3456678899999998777777778999999999999942 2221110000
Q ss_pred eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECC-CCccccccccccCcceeeEEEEE
Q 020461 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAK 199 (326)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~h~~~v~~v~~ 199 (326)
-...+++..+.+++..+.|+.|-.+|++.-+... .............|...+..+.+
T Consensus 65 ----------------------~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if 122 (404)
T KOG1409|consen 65 ----------------------HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVF 122 (404)
T ss_pred ----------------------hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEe
Confidence 0112445666777777888889889988877652 12222222333578999999999
Q ss_pred cCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceee-eEeecccce
Q 020461 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE-AKFFDKILQ 278 (326)
Q Consensus 200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~ 278 (326)
+.....+++.+.|..+.--..+++..+..+.......+..+.-. ..+++ + ..+... .++. .+..
T Consensus 123 ~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvG--d----------~~gqvt~lr~~-~~~~ 187 (404)
T KOG1409|consen 123 SLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVG--D----------HSGQITMLKLE-QNGC 187 (404)
T ss_pred cCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEec--c----------cccceEEEEEe-ecCC
Confidence 99999999999999888777777666555443322211111110 11111 1 111111 2222 2233
Q ss_pred eeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 279 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 279 ~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
..+..+.+|.+.+.+++|.|....|.+|..|..+.+|++.
T Consensus 188 ~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 188 QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 4456678999999999999999999999999999999874
No 278
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.81 E-value=7.8e-08 Score=76.39 Aligned_cols=254 Identities=16% Similarity=0.220 Sum_probs=140.1
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCC-----eeeeccCcc------------cceEEEEEcCCC--CeEEEE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHN------------GAVWCCDVSRDS--MTLITG 70 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-----~~~~~~~h~------------~~V~~~~~~~~~--~~l~s~ 70 (326)
.+-|+++-|...|.||++|...|.|.++..+... ...+|++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3568999999999999999999999999765432 223455554 346777776544 357777
Q ss_pred eCCCcEEEEEccCCcEEEEEe------cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEE-Eec
Q 020461 71 SADQTAKLWNVETGAQLFTFN------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILK 143 (326)
Q Consensus 71 ~~d~~i~~wd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 143 (326)
..|++|++|-+........-+ +..+..+ +.... ..+...++......-...+.+ ...
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g---------------~~~s~-~~l~lprls~hd~iiaa~p~rvyaN 169 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGG---------------PLTST-KELLLPRLSEHDEIIAAKPCRVYAN 169 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCC---------------CcCCH-HHhhcccccccceEEEeccceeccc
Confidence 899999999886542211111 1111000 00000 000000000000000001111 124
Q ss_pred cCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCc-----ceeeEEEEEcCCC-CeEEEEeCCCeEEE
Q 020461 144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH-----KKTITSLAKAADG-SHFLTGSLDKSAKL 217 (326)
Q Consensus 144 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h-----~~~v~~v~~s~~~-~~l~s~s~dg~i~i 217 (326)
.|.--|+++.++.+.+.++++ .|-+|.+|.+.-......+-...+| ...|++..|+|.. ..+.-.+..|+|++
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 566678899999988888865 5778999987532111111001122 2346777788753 35666777899999
Q ss_pred eecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEEC
Q 020461 218 WDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 297 (326)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 297 (326)
-|+|...+-.. .......... +.....+.+-.+.|..+.|+
T Consensus 249 ~DlRq~alcdn---~~klfe~~~D------------------------------------~v~~~ff~eivsSISD~kFs 289 (460)
T COG5170 249 NDLRQSALCDN---SKKLFELTID------------------------------------GVDVDFFEEIVSSISDFKFS 289 (460)
T ss_pred hhhhhhhhccC---chhhhhhccC------------------------------------cccchhHHHHhhhhcceEEc
Confidence 99985321000 0000000000 00001112223458889999
Q ss_pred CCCceEEeecCCCcEEEeecCCC
Q 020461 298 PDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 298 ~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
+.|+++++-+ =-+|+||++.++
T Consensus 290 ~ngryIlsRd-yltvkiwDvnm~ 311 (460)
T COG5170 290 DNGRYILSRD-YLTVKIWDVNMA 311 (460)
T ss_pred CCCcEEEEec-cceEEEEecccc
Confidence 9999998655 368999998765
No 279
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=9.3e-09 Score=92.17 Aligned_cols=186 Identities=16% Similarity=0.189 Sum_probs=125.4
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe-CCC-cEEEEEc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQ-TAKLWNV 81 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~-~i~~wd~ 81 (326)
..++.|...-+|++|+-+.++|+.|+-.|.|+++++.+|.......+|..+|+-+.=+-||..+++.+ +.. -..+|++
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 56788888899999999999999999999999999999999888999999999998777887655544 333 4678987
Q ss_pred cC-CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461 82 ET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (326)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (326)
.. +....+|.-+ . ++.|+...+.
T Consensus 1175 ~s~~~~~Hsf~ed---~-----------------------------------------------------~vkFsn~~q~ 1198 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDED---K-----------------------------------------------------AVKFSNSLQF 1198 (1516)
T ss_pred ccccCcccccccc---c-----------------------------------------------------eeehhhhHHH
Confidence 54 1111111100 0 1112111111
Q ss_pred EEEeeCCCcEEEEECCCCccccc-cccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEE
Q 020461 161 IISAGEDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 239 (326)
-+.|.......+||+.++..+.+ +....+.+..-....|+|+..+++ +|| -+||++..+.++.|..-..--+-.
T Consensus 1199 r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~ 1273 (1516)
T KOG1832|consen 1199 RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGG 1273 (1516)
T ss_pred HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheeccccc
Confidence 12233335578999998877665 333333344456778899887665 344 489999888777764322233456
Q ss_pred eCCCCCeeEEe
Q 020461 240 MSPLLDHVVLG 250 (326)
Q Consensus 240 ~s~~~~~~~~~ 250 (326)
|+|.+..+++-
T Consensus 1274 FHP~g~eVIIN 1284 (1516)
T KOG1832|consen 1274 FHPSGNEVIIN 1284 (1516)
T ss_pred ccCCCceEEee
Confidence 89998888763
No 280
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=3.9e-05 Score=62.71 Aligned_cols=235 Identities=17% Similarity=0.161 Sum_probs=136.7
Q ss_pred CCCeEEEecCCC--Ce-eeeccCcccceEEEEEcCCCCeEEEEeCC---CcEEEEEccC--CcEEEEEecCCCcceeeee
Q 020461 31 DHTPTVWFADNG--ER-LGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVET--GAQLFTFNFDSPARSVDFA 102 (326)
Q Consensus 31 d~~v~iw~~~~~--~~-~~~~~~h~~~V~~~~~~~~~~~l~s~~~d---~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~ 102 (326)
+.-|.+|++.+. +. ....-.+.+...=++|+|+.+.|.++..+ |.|-.|.++. |+....-+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~---------- 84 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ---------- 84 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc----------
Confidence 567889987633 22 11233456677789999999999888765 5555555442 222111000
Q ss_pred cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee-CCCcEEEEECCC-Ccc
Q 020461 103 VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTET-GKL 180 (326)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~~wd~~~-~~~ 180 (326)
... ..+-..+++++++++++++. .-|.|.++-++. |..
T Consensus 85 --------------------------------------~~~--g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l 124 (346)
T COG2706 85 --------------------------------------TLP--GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL 124 (346)
T ss_pred --------------------------------------ccC--CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence 000 11124567788888777663 467888888854 433
Q ss_pred ccccccccCccee----------eEEEEEcCCCCeEEEEeC-CCeEEEeecCCcceEEEE----eeccceEEEEeCCCCC
Q 020461 181 LKESDKETGHKKT----------ITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIKTY----VTERPVNAVTMSPLLD 245 (326)
Q Consensus 181 ~~~~~~~~~h~~~----------v~~v~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~s~~~~ 245 (326)
. .......|.+. +....+.|++++|++... -..|.+|++..+.+...- ....-.+-+.|+|+++
T Consensus 125 ~-~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k 203 (346)
T COG2706 125 Q-PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK 203 (346)
T ss_pred c-cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc
Confidence 2 22122233333 778889999999998874 346899999876554332 2233467899999998
Q ss_pred eeEEecCCC-cceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecC-CCcEEEeecCCC
Q 020461 246 HVVLGGGQD-ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE-DGYVRLHHFDPD 320 (326)
Q Consensus 246 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~-Dg~i~l~~~~~~ 320 (326)
...+..--+ ...+..++...+.++..-.-....+ .+.+ ....-+|..+|||++|.++.. ...|.+|+++++
T Consensus 204 ~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~---dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 204 YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE---DFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc---ccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 876654322 2223333333333221100000011 1222 234567889999999987755 448888888886
No 281
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.78 E-value=1e-05 Score=68.32 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=108.7
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCC-CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDH-TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~-~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
.+..+|...|....+..+++-++.|..|| .+-|++..+++.. .+...-+.|.++..+++|++++.+....-+-+.|++
T Consensus 353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 67778999999999999988888999999 8899998777644 455567889999999999999888877777777887
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
++.....- +...+-|+...|||++++++
T Consensus 432 ngnv~~id----------------------------------------------------kS~~~lItdf~~~~nsr~iA 459 (668)
T COG4946 432 NGNVRLID----------------------------------------------------KSEYGLITDFDWHPNSRWIA 459 (668)
T ss_pred CCCeeEec----------------------------------------------------ccccceeEEEEEcCCceeEE
Confidence 77543211 11224467788999999998
Q ss_pred EeeCCC----cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEE
Q 020461 163 SAGEDA----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 209 (326)
Q Consensus 163 s~~~d~----~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 209 (326)
.+--+| .|+++|+..++...... ..+|. .+-+|+||+++|.--
T Consensus 460 YafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~D---fsPaFD~d~ryLYfL 506 (668)
T COG4946 460 YAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYD---FSPAFDPDGRYLYFL 506 (668)
T ss_pred EecCcceeeeeEEEEecCCCeEEEecC-Ccccc---cCcccCCCCcEEEEE
Confidence 876666 58999998776543221 12222 234677888876543
No 282
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.77 E-value=1e-05 Score=70.29 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=45.9
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (326)
+..++.++.++.+..||.++++..-.... .. ..... .++..++.++.||.+..+|..+++.+-+.
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~----~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA----SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeecc----CC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 45677788899999999998876543321 11 11112 24567888889999999999999877554
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.75 E-value=1.6e-06 Score=83.83 Aligned_cols=180 Identities=13% Similarity=0.116 Sum_probs=112.7
Q ss_pred eeEEEEcc-CCCEEEeecCCCCeEEEecCCCCeeeecc---------Ccc------cceEEEEEcCCCCeE-EEEeCCCc
Q 020461 13 LTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYR---------GHN------GAVWCCDVSRDSMTL-ITGSADQT 75 (326)
Q Consensus 13 i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~---------~h~------~~V~~~~~~~~~~~l-~s~~~d~~ 75 (326)
...++|+| ++.++++.+.++.|++|+..++... .+. ++. .....++++|+++.| ++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 35789999 5677888888999999998776532 111 111 134568999998855 45556799
Q ss_pred EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (326)
Q Consensus 76 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (326)
|++||+.++........ ++.... ....+.. .+..+. ...-.....++++
T Consensus 764 Irv~D~~tg~~~~~~gg--------------------~~~~~~-~l~~fG~-----~dG~g~-----~~~l~~P~Gvavd 812 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGG--------------------DPTFSD-NLFKFGD-----HDGVGS-----EVLLQHPLGVLCA 812 (1057)
T ss_pred EEEEECCCCcEEEEEec--------------------ccccCc-ccccccC-----CCCchh-----hhhccCCceeeEe
Confidence 99999987653211100 000000 0000000 000000 0001122467889
Q ss_pred cCCcEEEEeeCCCcEEEEECCCCcccccccc-----------ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDK-----------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (326)
Q Consensus 156 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-----------~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~ 224 (326)
++|..+++-..+++|++||..++.... +.. ..+.-.....++++++|..+++.+.++.|++||+++++
T Consensus 813 ~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 813 KDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 999988888999999999998765432 111 01122356789999999999999999999999999876
Q ss_pred e
Q 020461 225 L 225 (326)
Q Consensus 225 ~ 225 (326)
.
T Consensus 892 ~ 892 (1057)
T PLN02919 892 A 892 (1057)
T ss_pred c
Confidence 5
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=1.6e-05 Score=69.48 Aligned_cols=180 Identities=11% Similarity=0.047 Sum_probs=107.1
Q ss_pred ceeEEEEccCCCE-EEeecC---CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCc--EEEEEccCC
Q 020461 12 PLTYLKYNKDGDL-LFSCAK---DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--AKLWNVETG 84 (326)
Q Consensus 12 ~i~~~~~s~~~~~-l~s~~~---d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~ 84 (326)
....-.|||||+. ++..+. +..|.++|+.+++...... ..+.+...+|+|||+.++ +.+.++. |.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5678899999984 654443 3567778998887644332 455566788999997654 4444443 333344443
Q ss_pred cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (326)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 164 (326)
+.... ..+........|+|+|+.|+..
T Consensus 268 ~~~~L-----------------------------------------------------T~~~~~d~~p~~SPDG~~I~F~ 294 (419)
T PRK04043 268 TLTQI-----------------------------------------------------TNYPGIDVNGNFVEDDKRIVFV 294 (419)
T ss_pred cEEEc-----------------------------------------------------ccCCCccCccEECCCCCEEEEE
Confidence 32110 0000011123689999876654
Q ss_pred eC-CC--cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC---------CeEEEeecCCcceEEEEeec
Q 020461 165 GE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---------KSAKLWDARTLELIKTYVTE 232 (326)
Q Consensus 165 ~~-d~--~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~ 232 (326)
++ .+ .|.+.|+.+++..+... .+. ....|+|||++++-.+.. ..|.+.|+.+++. +.+...
T Consensus 295 Sdr~g~~~Iy~~dl~~g~~~rlt~--~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~ 367 (419)
T PRK04043 295 SDRLGYPNIFMKKLNSGSVEQVVF--HGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN 367 (419)
T ss_pred ECCCCCceEEEEECCCCCeEeCcc--CCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC
Confidence 43 33 57777887765533221 111 124899999998866643 2678888887764 334333
Q ss_pred cceEEEEeCCCCCeeEEecC
Q 020461 233 RPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 233 ~~~~~~~~s~~~~~~~~~~~ 252 (326)
.......|+|+++.++....
T Consensus 368 ~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 368 GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred CCcCCeEECCCCCEEEEEEc
Confidence 33345789999998776543
No 285
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.74 E-value=2.7e-05 Score=67.58 Aligned_cols=265 Identities=16% Similarity=0.160 Sum_probs=134.0
Q ss_pred CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceee
Q 020461 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVD 100 (326)
Q Consensus 21 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 100 (326)
.+..++.++.++.+.-+|.++|+.+=..+-.......+.. ++..++.++.++.+..+|..+|+.+..........+.-
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 3667888889999999999999876443322221122222 45678888899999999999999877665433222111
Q ss_pred eecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccce-----eEEEEecCCcEEEEeeCCCcEEEEEC
Q 020461 101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI-----NRAVWGPLNRTIISAGEDAIVRIWDT 175 (326)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~s~~~d~~i~~wd~ 175 (326)
...++.+.+...+.. +...+. ..++.+...+...... ...... +..++.+..++.+..+|.
T Consensus 142 ~v~~~~v~v~~~~g~------l~a~d~------~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 142 LVANGLVVVRTNDGR------LTALDA------ATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDL 207 (377)
T ss_pred EEECCEEEEECCCCe------EEEEEc------CCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEc
Confidence 112333333222211 111110 0111111111110000 001111 246677888899999999
Q ss_pred CCCccccccccccCcc----eeeEEEEEcC--CCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEE
Q 020461 176 ETGKLLKESDKETGHK----KTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVL 249 (326)
Q Consensus 176 ~~~~~~~~~~~~~~h~----~~v~~v~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 249 (326)
++|+..-......... .....+.-+| .+..++.++.+|.++.+|.++++.+-...... ... ....++.+++
T Consensus 208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~--p~~~~~~vyv 284 (377)
T TIGR03300 208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQG--PAVDDNRLYV 284 (377)
T ss_pred cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccC--ceEeCCEEEE
Confidence 8887643221100000 0000111111 24578888899999999999998776554211 111 1123455555
Q ss_pred ecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 250 GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 250 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
+.. ++ .+...|...+.. +|.... +.+ ........ .+..+++++.||.|.+++.+.
T Consensus 285 ~~~-~G-~l~~~d~~tG~~---~W~~~~------~~~--~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 285 TDA-DG-VVVALDRRSGSE---LWKNDE------LKY--RQLTAPAV--VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred ECC-CC-eEEEEECCCCcE---EEcccc------ccC--CccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 432 22 233334333321 222110 000 01111111 366788888999998877543
No 286
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.73 E-value=2.5e-08 Score=81.57 Aligned_cols=88 Identities=22% Similarity=0.322 Sum_probs=73.7
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeec-cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
+..+.||..-++.++++||+++|.++..|..||+=.....-.+..| -||+..|..++.-+ ++.|+|+|.|+++++||+
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEec
Confidence 4567799999999999999999999999999998766554444444 57999999999865 556899999999999999
Q ss_pred cCCcEEEEEe
Q 020461 82 ETGAQLFTFN 91 (326)
Q Consensus 82 ~~~~~~~~~~ 91 (326)
.+|+++..+.
T Consensus 223 ~sgk~L~t~d 232 (390)
T KOG3914|consen 223 TSGKLLDTCD 232 (390)
T ss_pred ccCCcccccc
Confidence 9998875443
No 287
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=3.5e-06 Score=72.24 Aligned_cols=101 Identities=17% Similarity=0.268 Sum_probs=78.9
Q ss_pred ccceeEEEEecCCcEEE--EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC---CeEEEeec
Q 020461 146 QGRINRAVWGPLNRTII--SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDA 220 (326)
Q Consensus 146 ~~~i~~~~~~~~~~~l~--s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d---g~i~iwd~ 220 (326)
.++|.++.|+|.+..|+ .|-.-..+.++|++ +..+..+. +++-.++-|+|.|.+++-++.+ |.+-+||+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-----CCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 58899999999998665 45567789999987 44555442 4567789999999999988764 77999999
Q ss_pred CCcceEEEEeeccceEEEEeCCCCCeeEEecCC
Q 020461 221 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQ 253 (326)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 253 (326)
.+.+++..+... ......|+|+|++++++.-.
T Consensus 344 ~n~K~i~~~~a~-~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 344 PNRKLIAKFKAA-NTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred cchhhccccccC-CceEEEEcCCCcEEEEEecc
Confidence 998888776543 45667899999999877543
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.72 E-value=7.7e-05 Score=60.60 Aligned_cols=224 Identities=15% Similarity=0.092 Sum_probs=131.2
Q ss_pred EEEEcc-CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEc-CCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461 15 YLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVETGAQLFTFNF 92 (326)
Q Consensus 15 ~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 92 (326)
+..|.+ ++.++++--..+.|..|+..+++... +.... ...+.+. +++ .++.+...+ +.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 567888 77778887788999999988775532 22212 5556666 554 555566554 56669988865544433
Q ss_pred --CC-C---cceeeeecCCeEEEEEcCccce-eceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-Ee
Q 020461 93 --DS-P---ARSVDFAVGDKLAVITTDPFME-LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SA 164 (326)
Q Consensus 93 --~~-~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~ 164 (326)
.. + .+.+.+.++..+.+........ ....-.+.++..+ +. +..+.......+-++|+|+++.|+ +-
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-----~~-~~~~~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-----GK-VTVVADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-----SE-EEEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-----Ce-EEEEecCcccccceEECCcchheeecc
Confidence 11 1 2334455555554443221110 0000122222221 11 222222344567899999998665 66
Q ss_pred eCCCcEEEEECCCCcc-cc---ccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEE
Q 020461 165 GEDAIVRIWDTETGKL-LK---ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVT 239 (326)
Q Consensus 165 ~~d~~i~~wd~~~~~~-~~---~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~ 239 (326)
+..+.|..+++..... +. .+.....-....-.++++.+|...++....+.|..+|.+ ++.+..+..+ ..+.+++
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA 231 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence 7788899999853222 21 111111112347789999999988888888999999998 8888887655 5788888
Q ss_pred e-CCCCCeeEEe
Q 020461 240 M-SPLLDHVVLG 250 (326)
Q Consensus 240 ~-s~~~~~~~~~ 250 (326)
| -++.+.++++
T Consensus 232 fgg~~~~~L~vT 243 (246)
T PF08450_consen 232 FGGPDGKTLYVT 243 (246)
T ss_dssp EESTTSSEEEEE
T ss_pred EECCCCCEEEEE
Confidence 8 4666666654
No 289
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=3.7e-08 Score=79.21 Aligned_cols=125 Identities=18% Similarity=0.230 Sum_probs=89.1
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCC-----CeeeeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCC
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-----ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETG 84 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~-----~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~ 84 (326)
..|.++.|...+++++.|..+|.|...|+..+ .+...+ -|...|+++..-. ++++|++.+.+|+|++||.+--
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 45778889999999999999999999998755 233323 4788888876544 6789999999999999998643
Q ss_pred cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE--EEEecCCcEEE
Q 020461 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR--AVWGPLNRTII 162 (326)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~ 162 (326)
++- ..++..+||.+.-.. +-.++....++
T Consensus 332 K~~-------------------------------------------------~~V~qYeGHvN~~a~l~~~v~~eeg~I~ 362 (425)
T KOG2695|consen 332 KCK-------------------------------------------------KSVMQYEGHVNLSAYLPAHVKEEEGSIF 362 (425)
T ss_pred hcc-------------------------------------------------cceeeeecccccccccccccccccceEE
Confidence 331 112222333222111 11344566888
Q ss_pred EeeCCCcEEEEECCCCccccccc
Q 020461 163 SAGEDAIVRIWDTETGKLLKESD 185 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~ 185 (326)
++|+|...++|.++.+.++.++.
T Consensus 363 s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 363 SVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred EccCeeEEEEEecccCceeeccC
Confidence 99999999999999998887654
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=5.7e-07 Score=79.27 Aligned_cols=224 Identities=16% Similarity=0.219 Sum_probs=135.1
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCC
Q 020461 52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 131 (326)
Q Consensus 52 ~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (326)
.....|++|+....+++.||.||.+|+--+.+...-... . .+++.+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~------~--------glaa~s-------------------- 59 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNK------S--------GLAAAS-------------------- 59 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccc------c--------cccccc--------------------
Confidence 346789999999999999999999999877654321000 0 000000
Q ss_pred CCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC
Q 020461 132 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211 (326)
Q Consensus 132 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~ 211 (326)
....-.++.||.+.|.-+.|+.+.+.|-|...+|.|.+|-+..++...++... .....|.+++|..||..+.-...
T Consensus 60 ---nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNn-RnKSvV~SmsWn~dG~kIcIvYe 135 (1189)
T KOG2041|consen 60 ---NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINN-RNKSVVVSMSWNLDGTKICIVYE 135 (1189)
T ss_pred ---ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhC-cCccEEEEEEEcCCCcEEEEEEc
Confidence 00011246799999999999999999999999999999999988877665432 34577899999999999888888
Q ss_pred CCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcce
Q 020461 212 DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 291 (326)
Q Consensus 212 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 291 (326)
||.|.+=.+.......+-........+.|+++....+..-..+..- .+|+ .+.+..++-......-.+.+......|
T Consensus 136 DGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~h--lydn-qgnF~~Kl~~~c~Vn~tg~~s~~~~ki 212 (1189)
T KOG2041|consen 136 DGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETH--LYDN-QGNFERKLEKDCEVNGTGIFSNFPTKI 212 (1189)
T ss_pred cCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEE--Eecc-cccHHHhhhhceEEeeeeeecCCCccc
Confidence 8887665444332222111122344677888876655443332221 2222 222222221111000011111111123
Q ss_pred eEEEEC--------CCCceEEeecCCCcEEEee
Q 020461 292 NALAFN--------PDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 292 ~~v~~s--------~d~~~lat~s~Dg~i~l~~ 316 (326)
-.+.|. ||...||.|=+.|.+.|-+
T Consensus 213 a~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR 245 (1189)
T KOG2041|consen 213 AEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR 245 (1189)
T ss_pred cceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence 333332 5788899998888887743
No 291
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.67 E-value=1.2e-05 Score=68.27 Aligned_cols=145 Identities=12% Similarity=0.106 Sum_probs=93.8
Q ss_pred cCccceeEEEEecCCcEEEE--eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC---CeEEEe
Q 020461 144 GPQGRINRAVWGPLNRTIIS--AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLW 218 (326)
Q Consensus 144 ~~~~~i~~~~~~~~~~~l~s--~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d---g~i~iw 218 (326)
+..++|....|.|.+..|++ |-.+-.+.++|++.. ...- ..+..-..+.|+|.+.+++.++.| |.+-+|
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~-----~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~ 345 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY-----FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIF 345 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc-eEEe-----cCCcccccccccCcccEEEEecCCccccceEEe
Confidence 55678999999999886654 457889999999754 3221 223445667899999999998876 569999
Q ss_pred ecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC
Q 020461 219 DARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298 (326)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~ 298 (326)
|......+..-........+.|+|++....+..-.... + -...+++|+..... | ...+.+.|.|
T Consensus 346 ~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~-------~-~Dn~i~l~~v~g~~-------~-fel~~~~W~p 409 (561)
T COG5354 346 DPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKL-------R-VDNSIKLWDVYGAK-------V-FELTNITWDP 409 (561)
T ss_pred ccCCceEEEEEeecCCceEeeccCCceEEEecCCCccc-------c-cCcceEEEEecCch-------h-hhhhhccccC
Confidence 98765443322223455667899999877665322210 0 11134555533211 1 1456788888
Q ss_pred CCceEEeecCCC
Q 020461 299 DGKSFSSGGEDG 310 (326)
Q Consensus 299 d~~~lat~s~Dg 310 (326)
.|++..|.|.+.
T Consensus 410 ~~~~~ttsSs~~ 421 (561)
T COG5354 410 SGQYVTTSSSCP 421 (561)
T ss_pred CcccceeeccCC
Confidence 888877777665
No 292
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.66 E-value=1.4e-06 Score=68.78 Aligned_cols=155 Identities=16% Similarity=0.223 Sum_probs=105.4
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFT 89 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 89 (326)
..++.|++.+.-+++.-.+|.+.+-+..... .+++++.|.-+.|...|+. +.+.+++||.|+.+.-||++-.+ .+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFI 202 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-cee
Confidence 3578899999999999999999855544443 3458899999999999976 34689999999999999987332 111
Q ss_pred EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEEEEeeCCC
Q 020461 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDA 168 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d~ 168 (326)
+.. .+-|...|.++.-+| .+.+++||+-|.
T Consensus 203 ~~n-------------------------------------------------~kvH~~GV~SI~ss~~~~~~I~TGsYDe 233 (339)
T KOG0280|consen 203 WHN-------------------------------------------------SKVHTSGVVSIYSSPPKPTYIATGSYDE 233 (339)
T ss_pred eec-------------------------------------------------ceeeecceEEEecCCCCCceEEEecccc
Confidence 110 012344455554444 456899999999
Q ss_pred cEEEEECC-CCccccccccccCcceeeEEEEEcCCC--CeEEEEeCCCeEEEeecCC
Q 020461 169 IVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADG--SHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 169 ~i~~wd~~-~~~~~~~~~~~~~h~~~v~~v~~s~~~--~~l~s~s~dg~i~iwd~~~ 222 (326)
.|++||.+ -++++..- .-.+.|.-+..+|.- ..|+++-.+| .++-+...
T Consensus 234 ~i~~~DtRnm~kPl~~~----~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 234 CIRVLDTRNMGKPLFKA----KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD 285 (339)
T ss_pred ceeeeehhcccCccccC----ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence 99999997 45554432 223678888888753 2344444544 45555543
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=6.3e-05 Score=65.80 Aligned_cols=158 Identities=10% Similarity=0.029 Sum_probs=85.9
Q ss_pred EEEEecCCcEEE-EeeC--CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CC--eEEEeecCCcc
Q 020461 151 RAVWGPLNRTII-SAGE--DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLE 224 (326)
Q Consensus 151 ~~~~~~~~~~l~-s~~~--d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg--~i~iwd~~~~~ 224 (326)
...|+|+++.++ +.+. +..|.++|+.+++.. .+.. +........|+|||+.|+-.+. .+ .|.+.|+.+++
T Consensus 237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~---~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITN---YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-Eccc---CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 346889887554 3333 346777788776533 2221 2222334579999988776653 33 58888888776
Q ss_pred eEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEE
Q 020461 225 LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFS 304 (326)
Q Consensus 225 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~la 304 (326)
..+-..... . ...++|+++.++........ +...+...+.+.+...+.. ..+... +......|+|||+.++
T Consensus 313 ~~rlt~~g~-~-~~~~SPDG~~Ia~~~~~~~~-----~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~ 383 (419)
T PRK04043 313 VEQVVFHGK-N-NSSVSTYKNYIVYSSRETNN-----EFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIM 383 (419)
T ss_pred eEeCccCCC-c-CceECCCCCEEEEEEcCCCc-----ccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEE
Confidence 533322221 2 24899999988776543210 0000112344443322221 112211 2234588999999876
Q ss_pred eecC-CCcEEEeecCCCc
Q 020461 305 SGGE-DGYVRLHHFDPDY 321 (326)
Q Consensus 305 t~s~-Dg~i~l~~~~~~~ 321 (326)
-.+. .+.-.|+.++-+.
T Consensus 384 f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 384 FIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEccCCcEEEEEEecCC
Confidence 6554 3455566665544
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.63 E-value=5.3e-05 Score=61.15 Aligned_cols=216 Identities=21% Similarity=0.242 Sum_probs=121.9
Q ss_pred CCCeEEEecCCCCeeeeccC---cccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeE
Q 020461 31 DHTPTVWFADNGERLGTYRG---HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKL 107 (326)
Q Consensus 31 d~~v~iw~~~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (326)
+|+|..||..+|+.+-...- ..+.+.. ..+++..+++++.++.+..||..+|+.+..+..+.+....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-------- 71 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT--AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-------- 71 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET--EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce--EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--------
Confidence 57788888888877654432 2222321 2235667888899999999999999887666543221110
Q ss_pred EEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccc
Q 020461 108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 187 (326)
+ ...+..++.+..++.|..+|.++|+..-.....
T Consensus 72 ------------------------------~----------------~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 72 ------------------------------P----------------VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp ------------------------------E----------------EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred ------------------------------e----------------eecccccccccceeeeEecccCCcceeeeeccc
Confidence 0 001334555667778999998888876552111
Q ss_pred c-CcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccce-----------EEEEeCCCCCeeEEecCCCc
Q 020461 188 T-GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV-----------NAVTMSPLLDHVVLGGGQDA 255 (326)
Q Consensus 188 ~-~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~~s~~~~~~~~~~~~~~ 255 (326)
. .-...........++..++.+..++.|..+|+++|+.+-+.....+. ..-.....+ .++++..+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~ 184 (238)
T PF13360_consen 106 SSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGR 184 (238)
T ss_dssp SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSS
T ss_pred cccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCe
Confidence 1 00011122222333778899998999999999999998887543211 111112222 4444443332
Q ss_pred ceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 256 SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.+.. |...+. ..|... ...+... ..+++..|+.++.|+.|..|+....
T Consensus 185 -~~~~-d~~tg~---~~w~~~-----------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 185 -VVAV-DLATGE---KLWSKP-----------ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp -EEEE-ETTTTE---EEEEEC-----------SS-ECEC-EECCCTEEEEEETTTEEEEEETTTT
T ss_pred -EEEE-ECCCCC---EEEEec-----------CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCC
Confidence 2222 544443 113111 0112221 3356777777779999999877654
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.62 E-value=1.5e-05 Score=63.15 Aligned_cols=189 Identities=17% Similarity=0.199 Sum_probs=109.5
Q ss_pred eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc------C-cccceEEEEEcCC------CCeEEEEeCCCcEEEEE
Q 020461 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR------G-HNGAVWCCDVSRD------SMTLITGSADQTAKLWN 80 (326)
Q Consensus 14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~------~-h~~~V~~~~~~~~------~~~l~s~~~d~~i~~wd 80 (326)
..++||||+.+||.+...|+|+++|+...++. .+. + -..+|-.+.|-+. ...|+.-..+|.++-|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 57899999999999999999999998754432 222 1 1235666666332 22566777888888776
Q ss_pred ccC-----CcEEEEEec----CCCcceeeeecCCeEEEEEcCcccee------ceeeeeeeeccCCCCCCCceEEEeccC
Q 020461 81 VET-----GAQLFTFNF----DSPARSVDFAVGDKLAVITTDPFMEL------NSAIHVKRIARDPADQGGESVLILKGP 145 (326)
Q Consensus 81 ~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (326)
+.. .+....+.+ ...+..+.+.++..+.++++...... ...+..|++..+
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~--------------- 190 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD--------------- 190 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC---------------
Confidence 532 223334433 34566677777777666655432110 001112222111
Q ss_pred ccceeEEEEecCCcEEEEeeCCCc------EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEee
Q 020461 146 QGRINRAVWGPLNRTIISAGEDAI------VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (326)
Q Consensus 146 ~~~i~~~~~~~~~~~l~s~~~d~~------i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd 219 (326)
.|..+ .++..+|+. -.+|.+-+.+... ........|..+..||||..||+...+|.|.+|+
T Consensus 191 ---------~Pyyk-~v~~~~~~~~~~~~~~~~~~~~~~~~fs---~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 191 ---------SPYYK-QVTSSEDDITASSKRRGLLRIPSFKFFS---RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred ---------CCcEE-EccccCccccccccccceeeccceeeee---ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 11111 122222221 1233322221111 1112346789999999999999999999999999
Q ss_pred cCCcceEEEEee
Q 020461 220 ARTLELIKTYVT 231 (326)
Q Consensus 220 ~~~~~~~~~~~~ 231 (326)
+=+..+.+++..
T Consensus 258 iPsL~~~~~W~~ 269 (282)
T PF15492_consen 258 IPSLRLQRSWKQ 269 (282)
T ss_pred cCcchhhcccch
Confidence 877776666653
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=2.7e-07 Score=74.34 Aligned_cols=165 Identities=10% Similarity=0.128 Sum_probs=107.7
Q ss_pred EEccC--CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCC
Q 020461 17 KYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS 94 (326)
Q Consensus 17 ~~s~~--~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 94 (326)
+|+-+ |-. ++.+.+..|-+-|+++|-.. .|. -.+.|.++.|...+++++.|+..|.|...|++.+.+ +
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq-------G 287 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ-------G 287 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc-------C
Confidence 55533 334 66677777888888776543 333 466788888988788999999999999999875411 0
Q ss_pred CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEEEEeeCCCcEEEE
Q 020461 95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIW 173 (326)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d~~i~~w 173 (326)
.. .....-.|.+.|+++..-. .+++|...+-+|+|++|
T Consensus 288 ~~-----------------------------------------~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 288 NG-----------------------------------------WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLY 326 (425)
T ss_pred CC-----------------------------------------cceEEEEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence 00 0000112444555554433 46788888999999999
Q ss_pred ECCCCccccccccccCcceee--EEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec
Q 020461 174 DTETGKLLKESDKETGHKKTI--TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232 (326)
Q Consensus 174 d~~~~~~~~~~~~~~~h~~~v--~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 232 (326)
|.+.-++-..+..-.||-..- .-+-..+....+++++.|-..|||.++.+.++.+++.+
T Consensus 327 D~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 327 DLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 998655522222223553221 22234556667888999999999999999998887644
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.56 E-value=1.1e-06 Score=68.32 Aligned_cols=152 Identities=17% Similarity=0.199 Sum_probs=92.5
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccc-cccCcceeeEEEEEcCCCCeEEEEeC-----CCeEEEeecCCcceEEE-E
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESD-KETGHKKTITSLAKAADGSHFLTGSL-----DKSAKLWDARTLELIKT-Y 229 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~h~~~v~~v~~s~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~-~ 229 (326)
.+.-+++++.||.+.+++.+. ...... ....|.+. -+.++-..+..+.++.. =+..+.|+++....+.. .
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~--~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDK--DLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred cCCceEecCCCceEEEEechH--HHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence 355689999999999998764 111110 01111111 11122233444443321 23456677654332211 1
Q ss_pred eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC-CCceEEeecC
Q 020461 230 VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKSFSSGGE 308 (326)
Q Consensus 230 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~lat~s~ 308 (326)
.....+.+++-+|..++++++|.+++. +..+|.|... -++..++.|..+|+.+-|+| ++..|.++++
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~-----------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se 244 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVA-----------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE 244 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCe-EEEEEccccc-----------chHHHHHHhhhhhhheeccCCCchheeEecC
Confidence 223348899999999999988877653 4555554432 23455778999999999998 5678999999
Q ss_pred CCcEEEeecCCCcee
Q 020461 309 DGYVRLHHFDPDYFN 323 (326)
Q Consensus 309 Dg~i~l~~~~~~~~~ 323 (326)
||.+.-|+--..++.
T Consensus 245 dGslw~wdas~~~l~ 259 (319)
T KOG4714|consen 245 DGSLWHWDASTTFLS 259 (319)
T ss_pred CCcEEEEcCCCceEE
Confidence 999877766544543
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.55 E-value=6.2e-06 Score=64.23 Aligned_cols=73 Identities=25% Similarity=0.339 Sum_probs=59.3
Q ss_pred ceeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCC
Q 020461 148 RINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 148 ~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~ 222 (326)
.|.+++-+|..+ .+++|++||.+-+||.+....... ....|..++..+-|+| ++..|+++++||.+-.||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S--~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS--LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHH--HHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 377888888765 667889999999999987644332 2357999999999997 577899999999999999764
No 299
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.52 E-value=0.0003 Score=67.42 Aligned_cols=273 Identities=16% Similarity=0.140 Sum_probs=146.5
Q ss_pred ceeEEEEccCCCEEE-e-ecCCC--CeEEEecCCC---Ceeeecc-----CcccceEEEEEcCCCCeEEEEeCCCcEEEE
Q 020461 12 PLTYLKYNKDGDLLF-S-CAKDH--TPTVWFADNG---ERLGTYR-----GHNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~-s-~~~d~--~v~iw~~~~~---~~~~~~~-----~h~~~V~~~~~~~~~~~l~s~~~d~~i~~w 79 (326)
.+...+|.+..+.+. + +.... .+.+...... +.+..+. ...+.|.++.+-++...++.+..+|-|-+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 466778887665433 3 32322 2333322222 1233343 234578889988888888888889988888
Q ss_pred ----EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461 80 ----NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (326)
Q Consensus 80 ----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (326)
+..+.+.-..-..+..+.+..|+|++.++++.++....+.....+. ++.....+
T Consensus 103 ~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd----------------------~i~E~~l~ 160 (928)
T PF04762_consen 103 REDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD----------------------PISEVPLD 160 (928)
T ss_pred EccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce----------------------EEEEeecC
Confidence 6655554444456777888888888776665543211111111100 01111111
Q ss_pred cC---CcEEEEeeCCCcEEEEECCCCccc----c--cc-----ccccCcceeeEEEEEcCCCCeEEEEeC---C---CeE
Q 020461 156 PL---NRTIISAGEDAIVRIWDTETGKLL----K--ES-----DKETGHKKTITSLAKAADGSHFLTGSL---D---KSA 215 (326)
Q Consensus 156 ~~---~~~l~s~~~d~~i~~wd~~~~~~~----~--~~-----~~~~~h~~~v~~v~~s~~~~~l~s~s~---d---g~i 215 (326)
++ ....++.|+...=.=|.=..|+.. + +. .... +...-..++|-.||.++|+.+. + ..+
T Consensus 161 ~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~i 239 (928)
T PF04762_consen 161 SDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVI 239 (928)
T ss_pred ccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEE
Confidence 11 011222222111000000000000 0 00 0001 2334568899999999998875 3 479
Q ss_pred EEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc----cccCcc
Q 020461 216 KLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV----KGHFGP 290 (326)
Q Consensus 216 ~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~----~~h~~~ 290 (326)
|+|+.. |+.-..-. ...--.+++|.|.|+.++.+-.. .....+.||+++- ...+.+ ......
T Consensus 240 RVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~-----------~~~~~VvFfErNG-LrhgeF~l~~~~~~~~ 306 (928)
T PF04762_consen 240 RVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL-----------PDRHDVVFFERNG-LRHGEFTLRFDPEEEK 306 (928)
T ss_pred EEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc-----------CCCcEEEEEecCC-cEeeeEecCCCCCCce
Confidence 999976 54433322 23345688999999876655321 1223455555432 111111 123457
Q ss_pred eeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 291 INALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 291 v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
|..+.||+|+..||.--.|. |.||..-+..
T Consensus 307 v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 307 VIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred eeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 99999999999999987666 9999876543
No 300
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=5.2e-06 Score=68.47 Aligned_cols=80 Identities=11% Similarity=0.233 Sum_probs=71.2
Q ss_pred eeeecCCceeEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEcc
Q 020461 5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE 82 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~ 82 (326)
++.+|...|..++|||..+ ++..++.+.+|+|.|+++..++..+..| .++|+++|.-|. ++++.|...|.|-+||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 5677888999999999887 7888999999999999999999999888 899999998765 578889999999999997
Q ss_pred CCc
Q 020461 83 TGA 85 (326)
Q Consensus 83 ~~~ 85 (326)
..+
T Consensus 267 ~~~ 269 (463)
T KOG1645|consen 267 QPE 269 (463)
T ss_pred CCC
Confidence 654
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.40 E-value=3.7e-06 Score=76.18 Aligned_cols=146 Identities=17% Similarity=0.218 Sum_probs=101.1
Q ss_pred ccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC---------CCcEEEEEccCCcEEEE
Q 020461 19 NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---------DQTAKLWNVETGAQLFT 89 (326)
Q Consensus 19 s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~ 89 (326)
-.+++++++|...|+|.+-|..+.+.++++.+|++.|...+. .|+.|++||. |..|+|||++..+.+.-
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P 261 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP 261 (1118)
T ss_pred EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence 356889999999999999999999999999999999987655 5889999986 45578888876554321
Q ss_pred EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC-CcEEEEeeCCC
Q 020461 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDA 168 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~ 168 (326)
+++.... .-+.|+|. ...++.++..|
T Consensus 262 I~~~~~P-----------------------------------------------------~flrf~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 262 IQFPYGP-----------------------------------------------------QFLRFHPSLTTRLAVTSQSG 288 (1118)
T ss_pred cccccCc-----------------------------------------------------hhhhhcccccceEEEEeccc
Confidence 1111000 01223332 23566777788
Q ss_pred cEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEee
Q 020461 169 IVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (326)
Q Consensus 169 ~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd 219 (326)
...+-|..+ +............+..+.++++|+++..++-|..+|.|.+|-
T Consensus 289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 888877322 111111111112344589999999999999999999999997
No 302
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.39 E-value=1.1e-06 Score=77.73 Aligned_cols=82 Identities=17% Similarity=0.363 Sum_probs=60.6
Q ss_pred eeeeecCCceeEEEEccCC-CEEEeecCCCCeEEEecCCCC-eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 4 ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~-~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
.++.||..+|+.+-|+|.. ..|++|+.|..|-.||..... .+..+..-...-..+.|+.....+++.+..+-|++||.
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL 187 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence 4688999999999999875 589999999999999987764 35555443334455778764444455566677999998
Q ss_pred cCCc
Q 020461 82 ETGA 85 (326)
Q Consensus 82 ~~~~ 85 (326)
+.|.
T Consensus 188 r~gs 191 (1081)
T KOG0309|consen 188 RKGS 191 (1081)
T ss_pred cCCC
Confidence 7653
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.39 E-value=0.00012 Score=59.70 Aligned_cols=183 Identities=20% Similarity=0.271 Sum_probs=104.5
Q ss_pred EEEEccCCCEEEeecC-----CCCeEEEecC-CCCeeeeccCcccceEEEEEcCCCCeEEEEeC-------CCcEEE---
Q 020461 15 YLKYNKDGDLLFSCAK-----DHTPTVWFAD-NGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-------DQTAKL--- 78 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~~-----d~~v~iw~~~-~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-------d~~i~~--- 78 (326)
...||+||++|++.-+ .|.|-|||.. +-+.+.+|..|.-.=..+.+.||++.|+.+.. .|.-|+
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 5689999999998654 5889999998 55778888876544455668899977766542 123333
Q ss_pred --------EEccCCcEEEEEecCC-----CcceeeeecCCeEEEEEcCccc--eeceeeeeeeeccCCCCCCCceEEEe-
Q 020461 79 --------WNVETGAQLFTFNFDS-----PARSVDFAVGDKLAVITTDPFM--ELNSAIHVKRIARDPADQGGESVLIL- 142 (326)
Q Consensus 79 --------wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~- 142 (326)
-|..+|+.+....... .++-+.+..+..+++.....-- .....+... ..+.....+
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~--------~~g~~~~~~~ 206 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALH--------RRGGALRLLP 206 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEE--------cCCCcceecc
Confidence 2333444443333311 1222223333333332221000 000000000 011111111
Q ss_pred ------ccCccceeEEEEecCCcEE-EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC
Q 020461 143 ------KGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211 (326)
Q Consensus 143 ------~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~ 211 (326)
..-.+.+-++++++++..+ +|+=.-+.+.+||..+++.+.... ...++.++..+++ +++|.+.
T Consensus 207 ~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-----l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 207 APEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-----LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred CChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-----cCceeeeeecCCc-eEEeCCC
Confidence 2334678999999999866 566778899999999998876542 2457788877777 5555554
No 304
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.35 E-value=0.0001 Score=57.97 Aligned_cols=155 Identities=11% Similarity=0.038 Sum_probs=100.2
Q ss_pred EEEeecCCCCeEEEecCCCCeeeeccCcccc--eEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE-EEEEecCCCcceee
Q 020461 24 LLFSCAKDHTPTVWFADNGERLGTYRGHNGA--VWCCDVSRDSMTLITGSADQTAKLWNVETGAQ-LFTFNFDSPARSVD 100 (326)
Q Consensus 24 ~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~--V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~ 100 (326)
.+.-++.|+++++.+++-+... +.-|... ++.+++++|++++++.+....|..|.+..... +....
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~--~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~--------- 198 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNK--FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY--------- 198 (344)
T ss_pred ceeeccCCcceeEEEEecCccc--ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE---------
Confidence 3566888999998887654332 2234444 78899999999999999988898888764321 11000
Q ss_pred eecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCc-
Q 020461 101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK- 179 (326)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~- 179 (326)
.......=-+..|+.....+|++..||++.|||++.-.
T Consensus 199 -----------------------------------------~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 199 -----------------------------------------EAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred -----------------------------------------ecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 00000111234577777889999999999999997533
Q ss_pred cccccc-cccCcceeeEEEEEcCCCCe--EEEEeCCCeEEEeecCCcceEEEEe
Q 020461 180 LLKESD-KETGHKKTITSLAKAADGSH--FLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 180 ~~~~~~-~~~~h~~~v~~v~~s~~~~~--l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
++.+.. ....|.+.+..+.|++-|.. |.-.=.=+.+.+-|+|++.-.+-+.
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 322221 12358899999999976553 2222223578999999886655543
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00019 Score=65.20 Aligned_cols=192 Identities=12% Similarity=0.141 Sum_probs=117.0
Q ss_pred EEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccc-eEEEEEcCCCCeEEEEeCCCc-----EEEEEccCCcEEEEE
Q 020461 17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA-VWCCDVSRDSMTLITGSADQT-----AKLWNVETGAQLFTF 90 (326)
Q Consensus 17 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~-V~~~~~~~~~~~l~s~~~d~~-----i~~wd~~~~~~~~~~ 90 (326)
+|++++..+|-|+.+|.|.+.+. .-..++.|+++... |..+..-.+..+|++-+.|+. +++|+++..+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~---- 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK---- 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC----
Confidence 56899999999999999888762 22344788888776 555543333368888887754 89999864310
Q ss_pred ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec--cCccceeEEEEecCCcEEEEeeCCC
Q 020461 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQGRINRAVWGPLNRTIISAGEDA 168 (326)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~d~ 168 (326)
..+..++. .. .+...+ ....++.+++.+.+-+.++.|-.+|
T Consensus 105 --n~sP~c~~--------------------~~---------------ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG 147 (933)
T KOG2114|consen 105 --NNSPQCLY--------------------EH---------------RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNG 147 (933)
T ss_pred --CCCcceee--------------------ee---------------eeeccCCCCCCCcceEEEEEccccEEEEEecCc
Confidence 00000000 00 000001 1134567788888888999999999
Q ss_pred cEEEEEC---CCCccccccccccCcceeeEEEEEcCCCCe-EEEEeCCCeEEEeecCCcceEEE-Ee-eccceEEEEeCC
Q 020461 169 IVRIWDT---ETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDARTLELIKT-YV-TERPVNAVTMSP 242 (326)
Q Consensus 169 ~i~~wd~---~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~~~~~~~s~ 242 (326)
.|..+.= +.... +. .....-..+|+.+++..++.. +.++. -..|.+|.+....+... +. ++.+.+|..+++
T Consensus 148 ~V~~~~GDi~RDrgs-r~-~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~ 224 (933)
T KOG2114|consen 148 LVICYKGDILRDRGS-RQ-DYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD 224 (933)
T ss_pred EEEEEcCcchhcccc-ce-eeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCC
Confidence 9988842 11111 11 111223578999999988887 22333 24688888874432233 32 456789999988
Q ss_pred CCCeeEEecCC
Q 020461 243 LLDHVVLGGGQ 253 (326)
Q Consensus 243 ~~~~~~~~~~~ 253 (326)
....+++++++
T Consensus 225 ~t~qfIca~~e 235 (933)
T KOG2114|consen 225 GTYQFICAGSE 235 (933)
T ss_pred CCccEEEecCc
Confidence 77666666543
No 306
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.31 E-value=2.2e-05 Score=68.33 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=63.8
Q ss_pred CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (326)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~ 224 (326)
..+.+.+++++|+...++.|+.||+|.+||.+.+..... ...-..+.++|+|+|..+++|+.-|.+++||+.-..
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 456789999999999999999999999999876643221 123457889999999999999999999999987544
Q ss_pred eEEE
Q 020461 225 LIKT 228 (326)
Q Consensus 225 ~~~~ 228 (326)
....
T Consensus 333 i~~q 336 (545)
T PF11768_consen 333 IKMQ 336 (545)
T ss_pred ccee
Confidence 4333
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.31 E-value=1.4e-05 Score=72.64 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=96.8
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC---------CCeEEEeecCCcceEE
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---------DKSAKLWDARTLELIK 227 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~---------dg~i~iwd~~~~~~~~ 227 (326)
+++++.+|...|+|.+-|.++.+.+.++ ..|++.+..++. .|+.|+|++. |.-|++||+|+...+.
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~---~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~ 260 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSFETIHTF---DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS 260 (1118)
T ss_pred cCcEEEeecccceEEeecCCcCceeeee---eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccC
Confidence 4578899999999999999988877766 478888876654 5778998876 5568999999887766
Q ss_pred EEeeccceEEEEeCCCCCeeEEecCCCc-ceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee
Q 020461 228 TYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 306 (326)
Q Consensus 228 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~ 306 (326)
.+........+.|+|.....++..+..+ .... |. .-+.... ..+.-.......+..+.+|+.|..+|.|
T Consensus 261 PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~v--d~-------~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~alafg 330 (1118)
T KOG1275|consen 261 PIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFV--DT-------ATLSNPP-AGVKMVNPNGSGISAFDISSNGDALAFG 330 (1118)
T ss_pred CcccccCchhhhhcccccceEEEEecccceeec--cc-------cccCCCc-cceeEEccCCCcceeEEecCCCceEEEe
Confidence 6554445567778887655443322222 1110 00 0000000 0000011123458999999999999999
Q ss_pred cCCCcEEEee
Q 020461 307 GEDGYVRLHH 316 (326)
Q Consensus 307 s~Dg~i~l~~ 316 (326)
..+|.|.+|.
T Consensus 331 d~~g~v~~wa 340 (1118)
T KOG1275|consen 331 DHEGHVNLWA 340 (1118)
T ss_pred cccCcEeeec
Confidence 9999999998
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00017 Score=64.93 Aligned_cols=185 Identities=15% Similarity=0.177 Sum_probs=120.3
Q ss_pred ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe
Q 020461 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 91 (326)
.++|.+++ ++.|+-|.-+|.|++.+.. +.. .+...|... ..+|++++|||.||+|.+-.+-+.+..+.+.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 34555544 6688889999999998754 333 344445443 4579999999999999999999999988899
Q ss_pred cCCCcceeeeecC-----CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461 92 FDSPARSVDFAVG-----DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (326)
Q Consensus 92 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 166 (326)
+..|..++.+.|+ .+.+++++...+.+... .+.. ......+....++|.++.|. |.++|=+++
T Consensus 111 f~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er--------~wlg--nk~~v~l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 111 FKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSER--------NWLG--NKDSVVLSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred cCCcceeEEeccchhhhhhhheeecCcceEEEehh--------hhhc--CccceeeecCccceEEEEec--CcEEEEecC
Confidence 9999999888875 33444443321111111 1100 01111345567889999996 457888887
Q ss_pred CCcEEEEECCCCccccccccccC---cceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461 167 DAIVRIWDTETGKLLKESDKETG---HKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (326)
Q Consensus 167 d~~i~~wd~~~~~~~~~~~~~~~---h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~ 221 (326)
+| |+++|+.+++.+..+.+... ...-...+.|.++.. |+ -+...+|++..++
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LV-IGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LV-IGWGDSVKICSIK 233 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EE-EecCCeEEEEEEe
Confidence 77 99999998877665543211 112245667777654 33 3344578888776
No 309
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.27 E-value=7.7e-06 Score=65.36 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=55.8
Q ss_pred cceeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccc-------cccc------cCcceeeEEEEEcCCCCeEEEEeCC
Q 020461 147 GRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKE-------SDKE------TGHKKTITSLAKAADGSHFLTGSLD 212 (326)
Q Consensus 147 ~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~-------~~~~------~~h~~~v~~v~~s~~~~~l~s~s~d 212 (326)
..|++..|+|... .+...+..|.|++-|+++..+.-. .... .+--..|..+.|+++|.++++-+.
T Consensus 222 eVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy- 300 (460)
T COG5170 222 EVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY- 300 (460)
T ss_pred HHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-
Confidence 3467778888754 566788899999999985332211 0000 112345778899999999998887
Q ss_pred CeEEEeecCC-cceEEEE
Q 020461 213 KSAKLWDART-LELIKTY 229 (326)
Q Consensus 213 g~i~iwd~~~-~~~~~~~ 229 (326)
-+++|||.+. ..++.+.
T Consensus 301 ltvkiwDvnm~k~pikTi 318 (460)
T COG5170 301 LTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred ceEEEEecccccCCceee
Confidence 4899999885 3455554
No 310
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=0.00015 Score=65.20 Aligned_cols=211 Identities=13% Similarity=0.115 Sum_probs=132.5
Q ss_pred eeeeecCCceeEEEEccC-----------C-CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcC---CC-CeE
Q 020461 4 ILMKGHERPLTYLKYNKD-----------G-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR---DS-MTL 67 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~-----------~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~---~~-~~l 67 (326)
..+.-|...|+.+.|.|- . -+||++.-.|.|.+||...+..+-.+..|..+|..+.|-+ +. ..|
T Consensus 49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L 128 (1062)
T KOG1912|consen 49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVL 128 (1062)
T ss_pred hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhee
Confidence 456778888999988863 1 2577777889999999999888888899999998888865 34 466
Q ss_pred EEEeCCCcEEEEEccCCcEEEEEecCCCc-ceeeeec--CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461 68 ITGSADQTAKLWNVETGAQLFTFNFDSPA-RSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (326)
Q Consensus 68 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (326)
+.-....++-+|+..+|+......+...+ .++.+.| ..++++.+.+++......+ .....+..++.......
T Consensus 129 laIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l-----~~sep~~pgk~~qI~sd 203 (1062)
T KOG1912|consen 129 LAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL-----GLSEPDVPGKEFQITSD 203 (1062)
T ss_pred EEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc-----CCCCCCCCceeEEEecC
Confidence 66677789999999999987766553332 3344443 2344444444332211110 00111111222221111
Q ss_pred Ccc-------------------------ceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE
Q 020461 145 PQG-------------------------RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199 (326)
Q Consensus 145 ~~~-------------------------~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~ 199 (326)
|.. .....+|+|.-+.++-..-...+.++|++-..++..+... ++.+.-+++
T Consensus 204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie---r~~akfv~v 280 (1062)
T KOG1912|consen 204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE---RGGAKFVDV 280 (1062)
T ss_pred ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec---cCCcceeEe
Confidence 110 0124567888776666667778999999876666554322 233444555
Q ss_pred cCC--CCeEEEEeCCCeEEEeecCC
Q 020461 200 AAD--GSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 200 s~~--~~~l~s~s~dg~i~iwd~~~ 222 (326)
-|+ ...|.+.=.||.+.+|-.+.
T Consensus 281 lP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 281 LPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ccCCCcceEEEEecCCeEEEEEeec
Confidence 554 45688999999999997664
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=8.2e-06 Score=68.32 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=105.1
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecCCcceEEEEeeccceE
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIKTYVTERPVN 236 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~ 236 (326)
.+++++++-||.++.|.-..-.-+.-+.....|...+.+++.+.++-.+.|.+. |..++++|+.+...+..+.......
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg 99 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG 99 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC
Confidence 468899999999999975421222222334568889999999999999999887 9999999998877665544332222
Q ss_pred EEEeC-CCC--CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461 237 AVTMS-PLL--DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 313 (326)
Q Consensus 237 ~~~~s-~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~ 313 (326)
.+.|. ..+ ...++.+..+...+...|.+......-.++ .-|..+|..+.++|-+..+.+....|.|.
T Consensus 100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk----------klH~sPV~~i~y~qa~Ds~vSiD~~gmVE 169 (558)
T KOG0882|consen 100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK----------KLHFSPVKKIRYNQAGDSAVSIDISGMVE 169 (558)
T ss_pred ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec----------ccccCceEEEEeeccccceeeccccceeE
Confidence 22222 112 123333334444555566655443332222 34889999999999999999999999999
Q ss_pred EeecCCCc
Q 020461 314 LHHFDPDY 321 (326)
Q Consensus 314 l~~~~~~~ 321 (326)
-|.-++.|
T Consensus 170 yWs~e~~~ 177 (558)
T KOG0882|consen 170 YWSAEGPF 177 (558)
T ss_pred eecCCCcc
Confidence 99999743
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.12 E-value=1.9e-05 Score=68.66 Aligned_cols=76 Identities=11% Similarity=0.059 Sum_probs=61.8
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
.....+.|.+++|+...|+.|+.||+|.+||...+... +....=....++|+|+|..+++|+..|.+++||+.-+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 45678899999999999999999999999998665332 22223345779999999999999999999999986543
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.07 E-value=0.0026 Score=51.24 Aligned_cols=185 Identities=23% Similarity=0.212 Sum_probs=100.9
Q ss_pred cCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE-ecCCCcc-
Q 020461 20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPAR- 97 (326)
Q Consensus 20 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~~- 97 (326)
+++.++++++.++.+..||..+|+.+-.+.. .+.+..... .++..++.+..++.+..+|..+|+.+... ....+..
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-ecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 4677778888999999999999987655543 222111111 13445667778889999999999998874 3221111
Q ss_pred ---eeeee-cCCeEEEEEcCcc-ceeceeeeeeeeccCCCCCCCceEEEeccCcc----------ceeEEEEecCCcEEE
Q 020461 98 ---SVDFA-VGDKLAVITTDPF-MELNSAIHVKRIARDPADQGGESVLILKGPQG----------RINRAVWGPLNRTII 162 (326)
Q Consensus 98 ---~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~ 162 (326)
..... .++.+.+...... ..++ . ..|..+........ .+..-....++ .++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d-------~------~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 177 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALD-------P------KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVY 177 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEE-------T------TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEE
T ss_pred cccccCceEecCEEEEEeccCcEEEEe-------c------CCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEE
Confidence 11111 2344444332211 1111 0 11222222222111 11111122234 666
Q ss_pred EeeCCCc-EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEE
Q 020461 163 SAGEDAI-VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (326)
Q Consensus 163 s~~~d~~-i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 227 (326)
.++.++. +.+ |+.+++..-... . .....+ ...++..++.++.++.|..||+++++.+-
T Consensus 178 ~~~~~g~~~~~-d~~tg~~~w~~~---~--~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 178 VSSGDGRVVAV-DLATGEKLWSKP---I--SGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EECCTSSEEEE-ETTTTEEEEEEC---S--S-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEcCCCeEEEE-ECCCCCEEEEec---C--CCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 6666775 555 999987442111 1 112221 34667788888899999999999998753
No 314
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.06 E-value=0.0054 Score=53.63 Aligned_cols=189 Identities=13% Similarity=0.138 Sum_probs=97.2
Q ss_pred CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEE-EEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCccee-
Q 020461 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSV- 99 (326)
Q Consensus 22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~- 99 (326)
+..++.++.++.+.-+|.++|+.+=..+... .+.+ ... .+..++.+..++.+..+|.++|+.+.......+....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 4456667788899999999998754443322 2221 112 1345667788899999999999988776543221100
Q ss_pred ---e-eecCCeEEEEEcCccc-e--eceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec--CCcEEEEeeCCCcE
Q 020461 100 ---D-FAVGDKLAVITTDPFM-E--LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--LNRTIISAGEDAIV 170 (326)
Q Consensus 100 ---~-~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~d~~i 170 (326)
. ...++.+.+...+..+ . .......|........ ..... .....+.-+| .+..++.++.++.+
T Consensus 197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~-~~~~~-------~~~~~~~~sP~v~~~~vy~~~~~g~l 268 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT-GATEI-------DRLVDVDTTPVVVGGVVYALAYNGNL 268 (394)
T ss_pred CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCC-Cccch-------hcccccCCCcEEECCEEEEEEcCCeE
Confidence 0 0112222222221110 0 0000011111000000 00000 0000011112 24566677789999
Q ss_pred EEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE
Q 020461 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228 (326)
Q Consensus 171 ~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 228 (326)
..+|..+|+.+-.... +. ...+. ..+..++.++.+|.+...|.++++.+-+
T Consensus 269 ~ald~~tG~~~W~~~~--~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 269 VALDLRSGQIVWKREY--GS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred EEEECCCCCEEEeecC--CC---ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 9999998876433211 11 11122 2455788888999999999999876544
No 315
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.00 E-value=0.0053 Score=49.82 Aligned_cols=158 Identities=18% Similarity=0.148 Sum_probs=86.9
Q ss_pred EEEe-cCCcEEEEeeCCCcEEEEECCCCccccccccc-cC-cceeeEEEEEcCCCCeEEEEeCC--------CeEEEeec
Q 020461 152 AVWG-PLNRTIISAGEDAIVRIWDTETGKLLKESDKE-TG-HKKTITSLAKAADGSHFLTGSLD--------KSAKLWDA 220 (326)
Q Consensus 152 ~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~-h~~~v~~v~~s~~~~~l~s~s~d--------g~i~iwd~ 220 (326)
+++. ++ ..++.+...+ +.++|..+++........ .. .......++++++|...++.... |.|..++.
T Consensus 45 ~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~ 122 (246)
T PF08450_consen 45 MAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP 122 (246)
T ss_dssp EEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred EEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC
Confidence 3444 44 3444454444 556698877543322211 12 34678899999999977776643 55777777
Q ss_pred CCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC
Q 020461 221 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300 (326)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~ 300 (326)
. ++.......-...+.++++|+++.++++-..... +..++.......+ ...+.+..+..-.+..-.+++.++|
T Consensus 123 ~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~-i~~~~~~~~~~~~-----~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 123 D-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR-IWRFDLDADGGEL-----SNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp T-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE-EEEEEEETTTCCE-----EEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred C-CeEEEEecCcccccceEECCcchheeecccccce-eEEEeccccccce-----eeeeeEEEcCCCCcCCCcceEcCCC
Confidence 7 4544434444568999999999988765433322 2222221100000 0011121222222346779999999
Q ss_pred ceEEeecCCCcEEEeecC
Q 020461 301 KSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 301 ~~lat~s~Dg~i~l~~~~ 318 (326)
...++.-..+.|.+++-+
T Consensus 196 ~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp -EEEEEETTTEEEEEETT
T ss_pred CEEEEEcCCCEEEEECCC
Confidence 988877777777775433
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00079 Score=56.05 Aligned_cols=155 Identities=12% Similarity=0.088 Sum_probs=92.9
Q ss_pred CeeeeccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceecee
Q 020461 43 ERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121 (326)
Q Consensus 43 ~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (326)
.....+.+|...|..++|+|..+ ++..++.+.+|++.|+++...+..+..
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a----------------------------- 234 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA----------------------------- 234 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec-----------------------------
Confidence 33334567788899999999877 788899999999999987654332211
Q ss_pred eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCcEEEEECCCCcccc-ccccccCcceeeEEEE-
Q 020461 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLA- 198 (326)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~h~~~v~~v~- 198 (326)
+ ..+.+++|.-+.. +|+.|-.+|.|.+||++..+... ++.. .--..+|..++
T Consensus 235 -----------------------~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a-~~t~~pv~~i~~ 289 (463)
T KOG1645|consen 235 -----------------------Y-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVA-NVTINPVHKIAP 289 (463)
T ss_pred -----------------------c-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhh-hhccCcceeecc
Confidence 1 3456667766654 67778889999999997644321 1110 01123344443
Q ss_pred -----EcCCCCeEEEEeCCCeEEEeecCC----cceEEEEeeccceEEEEeCCCCCeeEEecCC
Q 020461 199 -----KAADGSHFLTGSLDKSAKLWDART----LELIKTYVTERPVNAVTMSPLLDHVVLGGGQ 253 (326)
Q Consensus 199 -----~s~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 253 (326)
.++-|.+|+..+.+ +.+|++.- .-++..+..+...-.++..+..++++++...
T Consensus 290 ~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 290 VQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred cCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecC
Confidence 23334455555544 56776542 1222223333444455556666888877654
No 317
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.99 E-value=1.8e-05 Score=43.03 Aligned_cols=38 Identities=42% Similarity=0.601 Sum_probs=33.6
Q ss_pred CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461 43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (326)
Q Consensus 43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd 80 (326)
+.+..+..|...|.++.|+++++.+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778899999999999989999999999999996
No 318
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.96 E-value=0.0047 Score=55.60 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=71.3
Q ss_pred CCCCeEEEEeCCCeEEEeecCC-----cceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCce--eeeEee
Q 020461 201 ADGSHFLTGSLDKSAKLWDART-----LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK--FEAKFF 273 (326)
Q Consensus 201 ~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~ 273 (326)
++|++... .++.|.+.|.++ .+.+..+..+..+..+.++|++..++++++.+.. +...|..... +.-++
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~- 361 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKI- 361 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccC-
Confidence 45655544 256799999998 5677777778889999999999999998775543 2233332211 00000
Q ss_pred cccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 274 DKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 274 ~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
+. ....++...-=.+ -...+|.++|....|-..|..|.-|+++.
T Consensus 362 ~~-~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KP-RDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred Cc-cceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 00 0000111110012 24688999999888889999999999886
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.00053 Score=62.47 Aligned_cols=110 Identities=13% Similarity=0.170 Sum_probs=78.8
Q ss_pred eeEEEEccCCCEEEeec----CCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEE
Q 020461 13 LTYLKYNKDGDLLFSCA----KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~----~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 88 (326)
.+-.+|+|.-.+++.++ ..|+|.|| +++|+.-... ...=.+.+++|+|..-.|+.|-.-|.+.+|..++.+.-
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~V-t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h- 94 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDV-TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH- 94 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccc-ccceehhhhccChHHHHHhhccccceeEEEecCCceee-
Confidence 35678999999988776 46889998 4677643211 11112456999998777888888888889876543321
Q ss_pred EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC
Q 020461 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~ 168 (326)
.+...|..+|.-+.|||+|..++|+..-|
T Consensus 95 ---------------------------------------------------tv~~th~a~i~~l~wS~~G~~l~t~d~~g 123 (1416)
T KOG3617|consen 95 ---------------------------------------------------TVVETHPAPIQGLDWSHDGTVLMTLDNPG 123 (1416)
T ss_pred ---------------------------------------------------eeccCCCCCceeEEecCCCCeEEEcCCCc
Confidence 11234667788889999999999999999
Q ss_pred cEEEEECC
Q 020461 169 IVRIWDTE 176 (326)
Q Consensus 169 ~i~~wd~~ 176 (326)
.+.+|...
T Consensus 124 ~v~lwr~d 131 (1416)
T KOG3617|consen 124 SVHLWRYD 131 (1416)
T ss_pred eeEEEEee
Confidence 99999754
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.94 E-value=0.0038 Score=59.25 Aligned_cols=235 Identities=14% Similarity=0.080 Sum_probs=125.5
Q ss_pred cceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCC
Q 020461 53 GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 132 (326)
Q Consensus 53 ~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (326)
..|.++.|..+.+-++.+..+|.|.+-|.++......-..+..+.+.+|++++..++..+..-..+.....+..+...+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~- 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP- 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc-
Confidence 5788999988888888899999999999888766555556777788889888877665443211111110000000000
Q ss_pred CCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC----------cEEEEECCCCccccccccccCcceeeEEEEEcCC
Q 020461 133 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA----------IVRIWDTETGKLLKESDKETGHKKTITSLAKAAD 202 (326)
Q Consensus 133 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~----------~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~ 202 (326)
+ ...-.+.+ .+++.|+.. ..+.-+....+.. .....-...=+++.|-.|
T Consensus 148 ------L-----------~~d~~~~s-k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~---~~~~~~~~~~~~IsWRgD 206 (1265)
T KOG1920|consen 148 ------L-----------DADDERKS-KFVNVGWGRKETQFRGSEGRQAARQKIEKEKA---LEQIEQDDHKTSISWRGD 206 (1265)
T ss_pred ------c-----------cccccccc-ccceecccccceeeecchhhhccccccccccc---ccchhhccCCceEEEccC
Confidence 0 00000001 122222221 1111111000000 000001122357899999
Q ss_pred CCeEEEEe----CC-CeEEEeecCCcceEEEE-eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc
Q 020461 203 GSHFLTGS----LD-KSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI 276 (326)
Q Consensus 203 ~~~l~s~s----~d-g~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 276 (326)
|.++++.. .+ ..|++||.. +.+-..- .....-.+++|-|.|..+++-...... -.+.+|..+
T Consensus 207 g~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd-----------~~IvffErN 274 (1265)
T KOG1920|consen 207 GEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSD-----------SDIVFFERN 274 (1265)
T ss_pred CcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCC-----------CcEEEEecC
Confidence 99998843 23 789999987 4332221 123345688899977665543221110 023444433
Q ss_pred c---eeeeccccccCcceeEEEECCCCceEEe---ecCCCcEEEeecCCCc
Q 020461 277 L---QEEIGGVKGHFGPINALAFNPDGKSFSS---GGEDGYVRLHHFDPDY 321 (326)
Q Consensus 277 ~---~~~~~~~~~h~~~v~~v~~s~d~~~lat---~s~Dg~i~l~~~~~~~ 321 (326)
. ++-.-.......+|..++|+.++..||. ......|++|-+-+.-
T Consensus 275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 1 1111111122334899999999999988 6666679999887653
No 321
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.92 E-value=0.0025 Score=55.92 Aligned_cols=140 Identities=15% Similarity=0.159 Sum_probs=68.5
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc-----------ceE
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-----------ELI 226 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~-----------~~~ 226 (326)
|..|+..+. +.|.+||..+++.++.+.. ..|..+.|+++|.+++-.+.+ ++.+.+.... +.+
T Consensus 117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f 189 (443)
T PF04053_consen 117 GNLLGVKSS-DFICFYDWETGKLIRRIDV-----SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAF 189 (443)
T ss_dssp SSSEEEEET-TEEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGE
T ss_pred CcEEEEECC-CCEEEEEhhHcceeeEEec-----CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhce
Confidence 444555544 4799999999988877642 248999999999998888765 6777765433 011
Q ss_pred EEEee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEe
Q 020461 227 KTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS 305 (326)
Q Consensus 227 ~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat 305 (326)
..+.. ...+.+.+|..+ .++.+.. . .++++-. + ..+.+..-..++.=+.+.|....+..
T Consensus 190 ~~~~E~~~~IkSg~W~~d--~fiYtT~----------~-----~lkYl~~--G-e~~~i~~ld~~~yllgy~~~~~~ly~ 249 (443)
T PF04053_consen 190 ELIHEISERIKSGCWVED--CFIYTTS----------N-----HLKYLVN--G-ETGIIAHLDKPLYLLGYLPKENRLYL 249 (443)
T ss_dssp EEEEEE-S--SEEEEETT--EEEEE-T----------T-----EEEEEET--T-EEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred EEEEEecceeEEEEEEcC--EEEEEcC----------C-----eEEEEEc--C-CcceEEEcCCceEEEEEEccCCEEEE
Confidence 22211 345666666543 2221111 1 1222111 1 11112222345666777776777777
Q ss_pred ecCCCcEEEeecCCCceee
Q 020461 306 GGEDGYVRLHHFDPDYFNI 324 (326)
Q Consensus 306 ~s~Dg~i~l~~~~~~~~~~ 324 (326)
...|+.|..+.+++..+..
T Consensus 250 ~Dr~~~v~~~~ld~~~~~f 268 (443)
T PF04053_consen 250 IDRDGNVISYELDLSELEF 268 (443)
T ss_dssp E-TT--EEEEE--HHHHHH
T ss_pred EECCCCEEEEEECHHHHHH
Confidence 8899999988888766543
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.91 E-value=0.0086 Score=49.19 Aligned_cols=236 Identities=13% Similarity=0.061 Sum_probs=128.1
Q ss_pred eEEEEccCCC-EEEeecCCC-CeEEEecCCCCeeeeccCcccceE--EEEEcCCCCeEEEEe-----CCCcEEEEEcc-C
Q 020461 14 TYLKYNKDGD-LLFSCAKDH-TPTVWFADNGERLGTYRGHNGAVW--CCDVSRDSMTLITGS-----ADQTAKLWNVE-T 83 (326)
Q Consensus 14 ~~~~~s~~~~-~l~s~~~d~-~v~iw~~~~~~~~~~~~~h~~~V~--~~~~~~~~~~l~s~~-----~d~~i~~wd~~-~ 83 (326)
..++.+|+.. .++.+---| ...+||..+++....+....+.-+ --.||+||++|++.= ..|.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 3456678444 444444433 345789999988776654444332 146999999998854 45889999998 3
Q ss_pred CcEEEEEecC-CCcceeeeecCCeEEEEEcCccc-eece-e--eeeeeeccC---CCCCCCceEEE--e--ccCccceeE
Q 020461 84 GAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFM-ELNS-A--IHVKRIARD---PADQGGESVLI--L--KGPQGRINR 151 (326)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~~~~~~~~---~~~~~~~~~~~--~--~~~~~~i~~ 151 (326)
-+.+-.+... -....+.+.++...+++...... ..+. + +++..+... ....+++.+.. + ..|+..|..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 3333333221 12233445566643333332211 1111 1 111111110 00123333333 3 346778999
Q ss_pred EEEecCCcEEEEeeCCCc-------EEEEECCCCcccccccc----ccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEee
Q 020461 152 AVWGPLNRTIISAGEDAI-------VRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWD 219 (326)
Q Consensus 152 ~~~~~~~~~l~s~~~d~~-------i~~wd~~~~~~~~~~~~----~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd 219 (326)
+++.++|..++..-..|. |-+++... .+..+.. ...-...+=+|++++++..+++.| .-+.+.+||
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 999998876655443332 33443322 1111110 012235678999999998775555 677899999
Q ss_pred cCCcceEEEEeeccceEEEEeCCCCCeeEEecCCC
Q 020461 220 ARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 254 (326)
..+++.+..... ..+..++-.+.+ ++++.|.+
T Consensus 246 ~~tg~~~~~~~l-~D~cGva~~~~~--f~~ssG~G 277 (305)
T PF07433_consen 246 AATGRLLGSVPL-PDACGVAPTDDG--FLVSSGQG 277 (305)
T ss_pred CCCCCEeecccc-CceeeeeecCCc--eEEeCCCc
Confidence 999998876543 244555555444 55555544
No 323
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.89 E-value=3.1e-05 Score=41.98 Aligned_cols=33 Identities=45% Similarity=0.952 Sum_probs=29.7
Q ss_pred ccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461 284 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 284 ~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
+..|...|+++.|+|++..+++++.|+.+++|+
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 346778999999999999999999999999985
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.0028 Score=57.50 Aligned_cols=96 Identities=13% Similarity=0.212 Sum_probs=63.8
Q ss_pred eeeecCCceeEEEEcc-------------CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC-----CCe
Q 020461 5 LMKGHERPLTYLKYNK-------------DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-----SMT 66 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~-------------~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-----~~~ 66 (326)
.|..|.+.+.-..+.- +|.+++|||.||+|.|-.+-+.+....+. ...++.+++++|+ .+.
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~ 131 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQ 131 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhh
Confidence 3445665555444443 49999999999999999887777655443 4668999999997 568
Q ss_pred EEEEeCCCcEEEEEcc---CCcEEEEEecCCCcceeeee
Q 020461 67 LITGSADQTAKLWNVE---TGAQLFTFNFDSPARSVDFA 102 (326)
Q Consensus 67 l~s~~~d~~i~~wd~~---~~~~~~~~~~~~~~~~~~~~ 102 (326)
+++||.-| +-++.-+ ....+..-..++++.++.|.
T Consensus 132 fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~ 169 (846)
T KOG2066|consen 132 FVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR 169 (846)
T ss_pred eeecCcce-EEEehhhhhcCccceeeecCccceEEEEec
Confidence 89999888 6665421 11222222345666666554
No 325
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.80 E-value=0.021 Score=50.07 Aligned_cols=204 Identities=12% Similarity=0.084 Sum_probs=101.5
Q ss_pred EEEccCCCEEEeecCC----------C-CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461 16 LKYNKDGDLLFSCAKD----------H-TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (326)
Q Consensus 16 ~~~s~~~~~l~s~~~d----------~-~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 84 (326)
++.+|.|-.+|..-.+ . .|+||+. .|+.+..+.=-.+.|-++.|..+ +.|+.-..||+++++|+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence 3445655555544333 1 4888874 56666655433378999999874 55667789999999998643
Q ss_pred cEEEEEecC---CCcceee----eecCCeEEEEEcCccc-eeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 85 AQLFTFNFD---SPARSVD----FAVGDKLAVITTDPFM-ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 85 ~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
. ...+..+ ..+.... ...++.++++..+..+ .+............+ .... .......+.....-..++.
T Consensus 112 ~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~-~~p~-~~~~~~~~~~~~~i~~l~~ 188 (410)
T PF04841_consen 112 F-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLP-EIPG-LWTKFHWWPSWTVIPLLSS 188 (410)
T ss_pred e-eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccc-cCCC-cccccccccccccceEeec
Confidence 3 1111110 1111110 1111233333322211 111100000000000 0000 0000001111000123444
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 231 (326)
+....+....++.+.+.+-...+. + ...+++..++.||+++++|.-..+|.+.+....-.+...++..
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---I----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---c----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 555555556666777555332211 1 1235799999999999999999999999987665566555543
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.79 E-value=0.029 Score=53.70 Aligned_cols=219 Identities=12% Similarity=0.066 Sum_probs=122.6
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 89 (326)
+.|.++.|-.+.+-++.+..+|.|.+-|.++.... +.| -...|.+.+|+||.+.++-...++++-+= ..+-..+..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~m-T~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFM-TKDFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEE-eccccchhc
Confidence 57899999999998888999999999887766542 223 24579999999999999888887776442 222211111
Q ss_pred EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec-----cCccceeEEEEecCCcEEEE-
Q 020461 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-----GPQGRINRAVWGPLNRTIIS- 163 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~s- 163 (326)
...+ .+....++.+-++-+ ...+.++...... . ..+.....+ .-.+.=+++.|-.+|+++++
T Consensus 146 ~~L~-----~d~~~~sk~v~VGwG---rkeTqfrgs~gr~-~---~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs 213 (1265)
T KOG1920|consen 146 KPLD-----ADDERKSKFVNVGWG---RKETQFRGSEGRQ-A---ARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVS 213 (1265)
T ss_pred cccc-----cccccccccceeccc---ccceeeecchhhh-c---ccccccccccccchhhccCCceEEEccCCcEEEEE
Confidence 0000 000011111111100 0000000000000 0 000000000 01122345788889998887
Q ss_pred ----eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe---CCCeEEEeecCCcceEEE----Eee-
Q 020461 164 ----AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDARTLELIKT----YVT- 231 (326)
Q Consensus 164 ----~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s---~dg~i~iwd~~~~~~~~~----~~~- 231 (326)
..+...|++||.+ |.+-..-.+ ....-.+++|-|.|..+++-. +|+.|.++... |..-.+ ++.
T Consensus 214 ~~~~~~~~RkirV~drE-g~Lns~se~---~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~d 288 (1265)
T KOG1920|consen 214 FVESETGTRKIRVYDRE-GALNSTSEP---VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLD 288 (1265)
T ss_pred EEeccCCceeEEEeccc-chhhcccCc---ccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCccc
Confidence 3333789999987 544332221 123345889999999888754 46678888753 322222 222
Q ss_pred ccceEEEEeCCCCCeeEE
Q 020461 232 ERPVNAVTMSPLLDHVVL 249 (326)
Q Consensus 232 ~~~~~~~~~s~~~~~~~~ 249 (326)
+..+..++|+.+++.+++
T Consensus 289 e~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 289 EKEVEELAWNSNSDILAV 306 (1265)
T ss_pred ccchheeeecCCCCceee
Confidence 234889999999888776
No 327
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00016 Score=63.46 Aligned_cols=90 Identities=20% Similarity=0.192 Sum_probs=75.1
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceE-EEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 89 (326)
..+..+-|+|.-.++|.+..+|.+.+..++ -.++-++.-|...|. +++|.|||+.|+.|=.||+|++.|++++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 457889999999999999999999999887 667778887888887 999999999999999999999999999988776
Q ss_pred --EecCCCcceeee
Q 020461 90 --FNFDSPARSVDF 101 (326)
Q Consensus 90 --~~~~~~~~~~~~ 101 (326)
+....++.+..|
T Consensus 100 ~~~s~e~~is~~~w 113 (665)
T KOG4640|consen 100 FLFSVETDISKGIW 113 (665)
T ss_pred cccccccchheeec
Confidence 333444444444
No 328
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.00029 Score=62.62 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=89.9
Q ss_pred ccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce
Q 020461 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (326)
Q Consensus 146 ~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 225 (326)
...+.--+++..+++++.|+.-|.+.++....++.... ...+....+.....+++..++|.|+..|.|-++-++....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 34455566777889999999999999999887765432 2223334566667888888899999999999887664221
Q ss_pred EEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEe
Q 020461 226 IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS 305 (326)
Q Consensus 226 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat 305 (326)
-. ..+++. .-+.|...|+++.|++|++.|.+
T Consensus 111 ~~------------------~~~~t~-------------------------------~d~~~~~rVTal~Ws~~~~k~ys 141 (726)
T KOG3621|consen 111 RD------------------LDYVTP-------------------------------CDKSHKCRVTALEWSKNGMKLYS 141 (726)
T ss_pred Cc------------------ceeecc-------------------------------ccccCCceEEEEEecccccEEee
Confidence 10 011110 01226778999999999999999
Q ss_pred ecCCCcEEEeecCC-Ccee
Q 020461 306 GGEDGYVRLHHFDP-DYFN 323 (326)
Q Consensus 306 ~s~Dg~i~l~~~~~-~~~~ 323 (326)
|...|+|.+-.++. ..|+
T Consensus 142 GD~~Gkv~~~~L~s~~~~~ 160 (726)
T KOG3621|consen 142 GDSQGKVVLTELDSRQAFL 160 (726)
T ss_pred cCCCceEEEEEechhhhhc
Confidence 99999999988876 4443
No 329
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.77 E-value=3.6e-05 Score=67.52 Aligned_cols=201 Identities=14% Similarity=0.179 Sum_probs=120.0
Q ss_pred ceeEEEEccCC--CEEEeecCCCCeEEEecCCCCe--eeeccCcccceEEEEEcC-CCCeEEEEe----CCCcEEEEEcc
Q 020461 12 PLTYLKYNKDG--DLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSR-DSMTLITGS----ADQTAKLWNVE 82 (326)
Q Consensus 12 ~i~~~~~s~~~--~~l~s~~~d~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~-~~~~l~s~~----~d~~i~~wd~~ 82 (326)
.+.|++...+. .+++.|..+|.|-+-......- .....+|..+.++++|++ |.+.||.|- .|..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 45677666543 5788999999999876544322 223467888999999987 445565543 35678999987
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
++-. .|.....|. + +.....++++|..+.+.++
T Consensus 138 s~lt-------vPke~~~fs--------~--------------------------------~~l~gqns~cwlrd~klvl 170 (783)
T KOG1008|consen 138 SLLT-------VPKESPLFS--------S--------------------------------STLDGQNSVCWLRDTKLVL 170 (783)
T ss_pred cccC-------CCccccccc--------c--------------------------------ccccCccccccccCcchhh
Confidence 6521 000000000 0 0011122556666677888
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEee-cCCcc-eEEEEeec-----cc
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWD-ARTLE-LIKTYVTE-----RP 234 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd-~~~~~-~~~~~~~~-----~~ 234 (326)
+|.....++++|++....... .-....+..+..+| .+.++++-+ ||.|-+|| .+..+ +++.+... ..
T Consensus 171 aGm~sr~~~ifdlRqs~~~~~----svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~ 245 (783)
T KOG1008|consen 171 AGMTSRSVHIFDLRQSLDSVS----SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQ 245 (783)
T ss_pred cccccchhhhhhhhhhhhhhh----hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccc
Confidence 999999999999984321111 11233466677778 667777666 99999999 44322 22222211 23
Q ss_pred eEEEEeCCCCCeeEEecCCCcceeEeeccc
Q 020461 235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHR 264 (326)
Q Consensus 235 ~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~ 264 (326)
...+++.|.-..+.+.-..+...+..+|.+
T Consensus 246 l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 246 LFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 677888887666555555555556555544
No 330
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.76 E-value=0.002 Score=58.22 Aligned_cols=152 Identities=10% Similarity=0.065 Sum_probs=94.7
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC------------CCeEEEEeCCCcEE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD------------SMTLITGSADQTAK 77 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~------------~~~l~s~~~d~~i~ 77 (326)
...-.++.|+|.|- ||-|+. ..|.+-|..+-+.+..+.-|+..|+.+.|.|. .-.++++...|.|.
T Consensus 15 ~sN~~A~Dw~~~GL-iAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSGL-IAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccce-EEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 33456789999775 555554 37778898888999999999999999999762 12567777889999
Q ss_pred EEEccCCcEEEEEec-CCCcceeeeec---CC--eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461 78 LWNVETGAQLFTFNF-DSPARSVDFAV---GD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (326)
Q Consensus 78 ~wd~~~~~~~~~~~~-~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (326)
+||...+..+..++. ..++..+.|.+ .. .+++..+..++.+++. .+|+.............+
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwnt------------dtG~k~Wk~~ys~~iLs~ 160 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNT------------DTGEKFWKYDYSHEILSC 160 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEc------------cCCceeeccccCCcceee
Confidence 999988776666654 34455555543 22 2223222222222111 123333333333445566
Q ss_pred EEEecCC-cEEEEeeCCCcEEEEEC
Q 020461 152 AVWGPLN-RTIISAGEDAIVRIWDT 175 (326)
Q Consensus 152 ~~~~~~~-~~l~s~~~d~~i~~wd~ 175 (326)
..++|.. +.+...+..|.+.+-+.
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEec
Confidence 7788854 46666666777766654
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00049 Score=61.29 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=90.7
Q ss_pred cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe-eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
|...+..-+++..+++++-|++-|.+++|+...++. .....+-.+.+..+..+++..++|.|+..|.|.++-++.+...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 445567778889999999999999999999877754 3344445556667778888888888889998888876542210
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 167 (326)
+.+.+. + .-+.|...|+++.|++++..+++|...
T Consensus 112 -----------------~~~~~t--------------------~---------~d~~~~~rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 112 -----------------DLDYVT--------------------P---------CDKSHKCRVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred -----------------cceeec--------------------c---------ccccCCceEEEEEecccccEEeecCCC
Confidence 000000 0 012267789999999999999999999
Q ss_pred CcEEEEECCC
Q 020461 168 AIVRIWDTET 177 (326)
Q Consensus 168 ~~i~~wd~~~ 177 (326)
|.|.+-.+.+
T Consensus 146 Gkv~~~~L~s 155 (726)
T KOG3621|consen 146 GKVVLTELDS 155 (726)
T ss_pred ceEEEEEech
Confidence 9999888876
No 332
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00022 Score=62.59 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=72.6
Q ss_pred cceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeE-EEEEcCCCCeEEEEeCCCeEEEeecCCcce
Q 020461 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (326)
Q Consensus 147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 225 (326)
..+..+.|+|.-..+|++..+|.|.+..++..+ +-++. -|...++ +++|.|||+.|+.|-.||+|++.|..++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR-lwtip---~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQR-LWTIP---IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccce-eEecc---CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 456778899999999999999998888777333 33332 2455566 999999999999999999999999999998
Q ss_pred EEE--EeeccceEEEEeCC
Q 020461 226 IKT--YVTERPVNAVTMSP 242 (326)
Q Consensus 226 ~~~--~~~~~~~~~~~~s~ 242 (326)
+.. +..+.++..+-|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 888 44556677776653
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00012 Score=66.42 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=76.5
Q ss_pred EEEcCCCCeEEEEeC----CCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEe
Q 020461 197 LAKAADGSHFLTGSL----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF 272 (326)
Q Consensus 197 v~~s~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 272 (326)
..|+|..++++.++. .|.+.|| ..+|++-+...-+..+.++||+|.- ++++.|+... .+.+
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~--~vLa~gwe~g------------~~~v 85 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEE--FVLAQGWEMG------------VSDV 85 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHH--HHHhhccccc------------eeEE
Confidence 356777777777664 5778888 4567765555444556789999953 4444444433 2344
Q ss_pred ecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 273 FDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 273 ~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
|.....+.......|..+|.-+.|||+|..|.|+..=|.+.+|++|
T Consensus 86 ~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 86 QKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5554444444556799999999999999999999999999999998
No 334
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=7.6e-05 Score=68.03 Aligned_cols=146 Identities=18% Similarity=0.253 Sum_probs=96.8
Q ss_pred eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeee
Q 020461 44 RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123 (326)
Q Consensus 44 ~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (326)
..++|+.|+..-+|++|+.+.+.|+.|+..|-|+++++.+|.....
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s---------------------------------- 1138 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES---------------------------------- 1138 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc----------------------------------
Confidence 3456788888899999999999999999999999999987753211
Q ss_pred eeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC-CC-cEEEEECCC-CccccccccccCcceeeEEEEEc
Q 020461 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DA-IVRIWDTET-GKLLKESDKETGHKKTITSLAKA 200 (326)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d~-~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s 200 (326)
..+|++.|+.+.=+.+|..+++.+. .. ...+|+..+ +...+.+. .-.++.|+
T Consensus 1139 ------------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~-------ed~~vkFs 1193 (1516)
T KOG1832|consen 1139 ------------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD-------EDKAVKFS 1193 (1516)
T ss_pred ------------------ccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc-------ccceeehh
Confidence 2345555555554556665554333 33 577999753 22222221 23466676
Q ss_pred CCCCeEEEEeCCCeEEEeecCCcceEEEEeec-----cceEEEEeCCCCCeeE
Q 020461 201 ADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-----RPVNAVTMSPLLDHVV 248 (326)
Q Consensus 201 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~ 248 (326)
.....-+.|+.-....+||++++..+.++..+ ..-++..|+|....++
T Consensus 1194 n~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1194 NSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred hhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 65445555665567899999999887775422 2357788999866544
No 335
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.61 E-value=0.04 Score=48.20 Aligned_cols=195 Identities=14% Similarity=0.138 Sum_probs=99.1
Q ss_pred CCCEEEeecCCCCeEEEecCCCCeeeec--cCccc--------ceE-EEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461 21 DGDLLFSCAKDHTPTVWFADNGERLGTY--RGHNG--------AVW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (326)
Q Consensus 21 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~--~~h~~--------~V~-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 89 (326)
.+..++.++.++.+.-+|.++|+.+=.. ....+ .+. .+.. ++..++.++.++.+..+|.++|+.+..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 3567777888888888898888764322 22110 111 1111 345677788899999999999998776
Q ss_pred EecCCCcceeeeecCCeEEEEEcCccc-ee--ceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461 90 FNFDSPARSVDFAVGDKLAVITTDPFM-EL--NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 166 (326)
........+.-...++.+.+...+..+ .+ ......|+.... .......+...++ . .+..++.++.
T Consensus 146 ~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~------~~~~~~~~~~sP~----v--~~~~v~~~~~ 213 (394)
T PRK11138 146 TKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLD------VPSLTLRGESAPA----T--AFGGAIVGGD 213 (394)
T ss_pred ccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCC------CCcccccCCCCCE----E--ECCEEEEEcC
Confidence 654433221111223333333222110 00 011111211110 0000001111111 1 1234666778
Q ss_pred CCcEEEEECCCCccccccccccC---cc-eeeEEEEEcC--CCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461 167 DAIVRIWDTETGKLLKESDKETG---HK-KTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTY 229 (326)
Q Consensus 167 d~~i~~wd~~~~~~~~~~~~~~~---h~-~~v~~v~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (326)
++.+..+|..+|+..-....... +. .....+..+| .+..++.++.+|.+.-.|.++++.+-+.
T Consensus 214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 89999999988876433211100 00 0011111122 2456777888999999999999876554
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.56 E-value=0.013 Score=51.31 Aligned_cols=185 Identities=14% Similarity=0.126 Sum_probs=104.1
Q ss_pred CceeEEEEccCCCEEEeec---CC-CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCe-EEEEeCCCcEEEEEcc--C
Q 020461 11 RPLTYLKYNKDGDLLFSCA---KD-HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT-LITGSADQTAKLWNVE--T 83 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~---~d-~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~~~d~~i~~wd~~--~ 83 (326)
..+..-+|+|+++.++--+ .. ..+.++++++++...... ..+.-...+|+|||+. +++...|+...+|-++ +
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 3445568889888765432 22 458888988876543332 2333345689999986 4666678887777443 2
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
.... .+. ...+.-..-.|+|+|++++.
T Consensus 272 ~~~~-~Lt----------------------------------------------------~~~gi~~~Ps~spdG~~ivf 298 (425)
T COG0823 272 KNLP-RLT----------------------------------------------------NGFGINTSPSWSPDGSKIVF 298 (425)
T ss_pred Ccce-ecc----------------------------------------------------cCCccccCccCCCCCCEEEE
Confidence 2210 000 00000112358899987765
Q ss_pred ee-CCCc--EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-Ce--EEEeecCCcceEEEEeeccceEE
Q 020461 164 AG-EDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-KS--AKLWDARTLELIKTYVTERPVNA 237 (326)
Q Consensus 164 ~~-~d~~--i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-g~--i~iwd~~~~~~~~~~~~~~~~~~ 237 (326)
.+ ..|. |.+.+.+.+... .+.... ..-..-.++|||++++-.+.. |. |.+.|+.++..++.+........
T Consensus 299 ~Sdr~G~p~I~~~~~~g~~~~-riT~~~---~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ 374 (425)
T COG0823 299 TSDRGGRPQIYLYDLEGSQVT-RLTFSG---GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNES 374 (425)
T ss_pred EeCCCCCcceEEECCCCCcee-EeeccC---CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCC
Confidence 44 3444 555566544432 222111 111256789999998877643 44 66667766654454444444445
Q ss_pred EEeCCCCCeeEEecCC
Q 020461 238 VTMSPLLDHVVLGGGQ 253 (326)
Q Consensus 238 ~~~s~~~~~~~~~~~~ 253 (326)
-.+.+++..++...+.
T Consensus 375 ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 375 PSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCcCCCCceEEEeccC
Confidence 6677777777665443
No 337
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.43 E-value=0.038 Score=46.84 Aligned_cols=138 Identities=15% Similarity=0.263 Sum_probs=79.9
Q ss_pred CcEEEEECCCC----ccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc-eEEEEeeccceEEEEeCC
Q 020461 168 AIVRIWDTETG----KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-LIKTYVTERPVNAVTMSP 242 (326)
Q Consensus 168 ~~i~~wd~~~~----~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~s~ 242 (326)
|+|.++++... ..+..+ ......++|++++.- ++ +|+.+. .+.|.+|+++..+ ....-....+....++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i-~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLI-HSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEE-EEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEE-EEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 78888888763 122211 112345778888766 33 444444 4789999998877 544444434445555555
Q ss_pred CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.++.++++....+..+..++.....+ ..+.. .....++.++.|-+|+..++.+..+|.+.+++++++
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~~~~l----------~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEENNKL----------ILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETTTE-E----------EEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred cccEEEEEEcccCEEEEEEEccCCEE----------EEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 56677776555554444333211111 11111 112346888999867779999999999999999875
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.39 E-value=0.097 Score=47.20 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=47.7
Q ss_pred CCEEEeecCCCCeEEEecCCCCeeeeccCccc------ce-E-EEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecC
Q 020461 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG------AV-W-CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD 93 (326)
Q Consensus 22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~------~V-~-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 93 (326)
+..++.++.++.+.-.|.++|+.+=.++.... .+ . .+... ++..++.++.++.|.-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 45566777889999889998876543332211 11 1 11111 2257778889999999999999998877654
Q ss_pred C
Q 020461 94 S 94 (326)
Q Consensus 94 ~ 94 (326)
.
T Consensus 140 ~ 140 (488)
T cd00216 140 D 140 (488)
T ss_pred C
Confidence 3
No 339
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.35 E-value=0.011 Score=55.22 Aligned_cols=145 Identities=14% Similarity=0.166 Sum_probs=87.9
Q ss_pred CCEEE-eecCCCCeEEEecCCCCeeeeccCcccc-eEEEEEcCC-------CCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461 22 GDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGA-VWCCDVSRD-------SMTLITGSADQTAKLWNVETGAQLFTFNF 92 (326)
Q Consensus 22 ~~~l~-s~~~d~~v~iw~~~~~~~~~~~~~h~~~-V~~~~~~~~-------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 92 (326)
.++|+ .......++-.|++.|+.+.+++.|... |..+ .|+ ....+.|-.+..+..||++-........
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~- 569 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS- 569 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeec-
Confidence 34433 3345577788899999999999887643 5544 332 2345567777788888876422100000
Q ss_pred CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEE
Q 020461 93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI 172 (326)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~ 172 (326)
. ...+. ......|++-+. ..+||.|+.+|.||+
T Consensus 570 ~----~k~Y~------------------------------------------~~~~Fs~~aTt~-~G~iavgs~~G~IRL 602 (794)
T PF08553_consen 570 Q----SKQYS------------------------------------------SKNNFSCFATTE-DGYIAVGSNKGDIRL 602 (794)
T ss_pred c----ccccc------------------------------------------cCCCceEEEecC-CceEEEEeCCCcEEe
Confidence 0 00000 011122333333 347899999999999
Q ss_pred EECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 173 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~ 220 (326)
||. .++..++.. .+-..+|+.|+.+.||.++++.+. ..|.+++.
T Consensus 603 yd~-~g~~AKT~l--p~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 603 YDR-LGKRAKTAL--PGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ecc-cchhhhhcC--CCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 995 343333332 355689999999999999888775 45666664
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.33 E-value=0.058 Score=48.85 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=77.0
Q ss_pred EcCCCCeEEEEe-CCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcC-ccceeceeeeeeeeccCCCCCCCc
Q 020461 60 VSRDSMTLITGS-ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGE 137 (326)
Q Consensus 60 ~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 137 (326)
+++||+.+...+ ..+.+.+.|.++.+....+..+.....+.+.++++.+.+... ..... .+..+... . ..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~----tl~em~a~--e--~d 271 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGV----TLAEMMAA--E--RD 271 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCc----ceeeeccc--c--Cc
Confidence 455666553333 345566677777666555554444445566666655554431 10000 00000000 0 00
Q ss_pred eEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCC----C-ccccccccccCcceeeEEEEEcCCCCeEEEEe-C
Q 020461 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET----G-KLLKESDKETGHKKTITSLAKAADGSHFLTGS-L 211 (326)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~----~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~ 211 (326)
.+..+.- .. ...+.++|++... .++.|.++|.++ + +....+ .-......++++|||+++++++ .
T Consensus 272 ~~vvfni--~~--iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI----PVGKsPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 272 WVVVFNI--AR--IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV----PVPKNPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred eEEEEch--HH--HHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE----ECCCCccceEECCCCCEEEEeCCC
Confidence 0000000 00 0023346665554 367899999887 2 222222 2235567899999999987665 5
Q ss_pred CCeEEEeecCCcc
Q 020461 212 DKSAKLWDARTLE 224 (326)
Q Consensus 212 dg~i~iwd~~~~~ 224 (326)
+.++.+.|+++.+
T Consensus 342 S~tVSVIDv~k~k 354 (635)
T PRK02888 342 SPTVTVIDVRKLD 354 (635)
T ss_pred CCcEEEEEChhhh
Confidence 8999999998755
No 341
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.04 Score=50.81 Aligned_cols=145 Identities=16% Similarity=0.210 Sum_probs=79.8
Q ss_pred EEEEeeCCC-----cEEEEECCCCc------cc---cccc-cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC---
Q 020461 160 TIISAGEDA-----IVRIWDTETGK------LL---KESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR--- 221 (326)
Q Consensus 160 ~l~s~~~d~-----~i~~wd~~~~~------~~---~~~~-~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~--- 221 (326)
+|++-+.|+ .+++||++.-. ++ +.+. ...-...++.+++.+.+-+.+|.|-.||.|..+.-.
T Consensus 79 ~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R 158 (933)
T KOG2114|consen 79 FLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR 158 (933)
T ss_pred EEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh
Confidence 444444443 58999986431 11 1111 111134678889999998899999999999988421
Q ss_pred C-c-ceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461 222 T-L-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (326)
Q Consensus 222 ~-~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d 299 (326)
. + +.........++.++++..++..++..+-.....++...++ . .....+..|...++|.+|++.
T Consensus 159 Drgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr------------~-p~~~~ld~~G~~lnCss~~~~ 225 (933)
T KOG2114|consen 159 DRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR------------T-PSLKVLDNNGISLNCSSFSDG 225 (933)
T ss_pred ccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC------------C-cceeeeccCCccceeeecCCC
Confidence 1 1 11112234568999999888777332221111111111111 1 112234566678999999875
Q ss_pred CceEEeecCCCcEEEeecC
Q 020461 300 GKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 300 ~~~lat~s~Dg~i~l~~~~ 318 (326)
...|+.|+ +..+.+++-+
T Consensus 226 t~qfIca~-~e~l~fY~sd 243 (933)
T KOG2114|consen 226 TYQFICAG-SEFLYFYDSD 243 (933)
T ss_pred CccEEEec-CceEEEEcCC
Confidence 55455443 4455554443
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.31 E-value=0.0064 Score=56.68 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=60.6
Q ss_pred EEEeeCCCcEEEEECCCCc--cccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE-Eee-ccceE
Q 020461 161 IISAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT-YVT-ERPVN 236 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~-~~~~~ 236 (326)
-+.|-++..+..||.+-.. ++..............|++-+.+| +||.|+.+|.||+||. .+..-++ ++. +.+|.
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~ 622 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPII 622 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCee
Confidence 3557778889999987532 221111122234557788888777 7999999999999994 3332233 222 56899
Q ss_pred EEEeCCCCCeeEEec
Q 020461 237 AVTMSPLLDHVVLGG 251 (326)
Q Consensus 237 ~~~~s~~~~~~~~~~ 251 (326)
.+..+.+|.+++++.
T Consensus 623 ~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 623 GIDVTADGKWILATC 637 (794)
T ss_pred EEEecCCCcEEEEee
Confidence 999999999988654
No 343
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.29 E-value=0.001 Score=38.08 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=31.1
Q ss_pred eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe
Q 020461 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER 44 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~ 44 (326)
+.-...|.+++|+|...+||.+..+|.|.++.+ ++++
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 334467999999999999999999999999987 5544
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.29 E-value=0.027 Score=38.72 Aligned_cols=65 Identities=17% Similarity=0.098 Sum_probs=47.3
Q ss_pred eeEEEEc---cCC-CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 13 LTYLKYN---KDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 13 i~~~~~s---~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
|+++++. -|| +.|+.||.|..||+|+ ..+.+.++.. ++.|.++.-... ..|+-+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 4455544 444 4799999999999997 4577777766 446666655444 56888999999999975
No 345
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.23 E-value=0.0011 Score=37.96 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=27.8
Q ss_pred CcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 288 FGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 288 ~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
..+|..++|+|...++|.|+.||.|.++++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 356999999999999999999999999988
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.22 E-value=0.078 Score=42.76 Aligned_cols=201 Identities=14% Similarity=0.154 Sum_probs=100.5
Q ss_pred eeeecCCceeEEEEccCCCEEE-eecCCCCeEEEecCCCCeeeeccCc-ccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 5 LMKGHERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~-s~~~d~~v~iw~~~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
.+.+-...+..++|+|+.+.|+ .....+.|...+. +|+.+..+.-. .+....|++..++.++++--.++.+.+.++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3445556799999999877555 4556666666665 57776665422 3457788887777766665567877777763
Q ss_pred CCcE-EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 83 TGAQ-LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 83 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
.... +..-. +..+. +.....++..+--++|+|.++.|
T Consensus 95 ~~~~~~~~~~--------------------------------~~~~~----------l~~~~~~N~G~EGla~D~~~~~L 132 (248)
T PF06977_consen 95 DDTTSLDRAD--------------------------------VQKIS----------LGFPNKGNKGFEGLAYDPKTNRL 132 (248)
T ss_dssp ---TT--EEE--------------------------------EEEEE-------------S---SS--EEEEEETTTTEE
T ss_pred ccccccchhh--------------------------------ceEEe----------cccccCCCcceEEEEEcCCCCEE
Confidence 3210 00000 00000 00001123345567788877766
Q ss_pred EEeeCCCcEEEEECCC---Cccccc-----cccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEeec
Q 020461 162 ISAGEDAIVRIWDTET---GKLLKE-----SDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVTE 232 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~---~~~~~~-----~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 232 (326)
+.+-+..-.+++.++. ...... +.........+.++.++|. +.+++-...+..|...| .+|+.+..+...
T Consensus 133 ~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~ 211 (248)
T PF06977_consen 133 FVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLD 211 (248)
T ss_dssp EEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-S
T ss_pred EEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeC
Confidence 6666666566665543 111110 0001112344678888886 55666777788899999 567776665432
Q ss_pred ----------cceEEEEeCCCCCeeEE
Q 020461 233 ----------RPVNAVTMSPLLDHVVL 249 (326)
Q Consensus 233 ----------~~~~~~~~s~~~~~~~~ 249 (326)
....+++|.++|+..++
T Consensus 212 ~g~~gl~~~~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 212 RGFHGLSKDIPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp TTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred CcccCcccccCCccEEEECCCCCEEEE
Confidence 25789999998865554
No 347
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.06 E-value=0.19 Score=44.19 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=59.0
Q ss_pred EEEEecCCcEEE-EeeCCCc--EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CCe--EEEeecCCcc
Q 020461 151 RAVWGPLNRTII-SAGEDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKS--AKLWDARTLE 224 (326)
Q Consensus 151 ~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~--i~iwd~~~~~ 224 (326)
...|+|+|+.|+ +...||. |.+.|+..++..+ +....+. -+.=.|+|||++++-.+. .|. |.+.|+...+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi---~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGI---NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCcc---ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 356899998665 5566775 5555776655322 3222222 225578999999886654 444 5666666555
Q ss_pred eEEEEeeccceEEEEeCCCCCeeEEecC
Q 020461 225 LIKTYVTERPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 225 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 252 (326)
..+-......-..-.++|+++.++....
T Consensus 318 ~~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 318 VTRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred eeEeeccCCCCcCccCCCCCCEEEEEec
Confidence 4222222222336778999999887663
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.01 E-value=0.037 Score=48.79 Aligned_cols=143 Identities=11% Similarity=0.093 Sum_probs=71.1
Q ss_pred cceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE
Q 020461 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (326)
Q Consensus 147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 226 (326)
.....+.++|+++.++. +.||...|+..... +. ...+.....+|.+.+ .+|+-...++|+++.--..+..
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---cc-----cccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence 34667899999999888 45666667763221 11 123456778888854 5677766888999632222222
Q ss_pred EEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee
Q 020461 227 KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 306 (326)
Q Consensus 227 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~ 306 (326)
..+..+..+..+-- |..+...+ .+ .+.+|+..++..+..+.- .+|..|.||++|.++|-.
T Consensus 103 k~i~~~~~~~~If~---G~LL~~~~-~~--------------~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 103 KSIKLPFSVEKIFG---GNLLGVKS-SD--------------FICFYDWETGKLIRRIDV--SAVKYVIWSDDGELVALV 162 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEE-TT--------------EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE
T ss_pred eEEcCCcccceEEc---CcEEEEEC-CC--------------CEEEEEhhHcceeeEEec--CCCcEEEEECCCCEEEEE
Confidence 23333322222222 33333322 11 245566665555555432 348999999999999998
Q ss_pred cCCCcEEEeecCCC
Q 020461 307 GEDGYVRLHHFDPD 320 (326)
Q Consensus 307 s~Dg~i~l~~~~~~ 320 (326)
+.+ .+.|.+++.+
T Consensus 163 t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 163 TKD-SIYILKYNLE 175 (443)
T ss_dssp -S--SEEEEEE-HH
T ss_pred eCC-eEEEEEecch
Confidence 855 6677666544
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.00 E-value=0.19 Score=43.67 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=79.9
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEE-EEe-cCCCcceeeee--c-CCeEEEEEcCccceeceeeeeeeec
Q 020461 54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF-TFN-FDSPARSVDFA--V-GDKLAVITTDPFMELNSAIHVKRIA 128 (326)
Q Consensus 54 ~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~-~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (326)
.|..++|+++...|+.+-..|-|-+|-...++.-. ... .........+. . ...+. . +..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------d------i~~r~ 68 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLT--------D------ISDRA 68 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEE--------E-------GGG-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceE--------E------ehhhC
Confidence 47889999998889999999999998775543211 000 00000000000 0 00000 0 00000
Q ss_pred cCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccc--c---ccCcceeeEEEEEc---
Q 020461 129 RDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD--K---ETGHKKTITSLAKA--- 200 (326)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~---~~~h~~~v~~v~~s--- 200 (326)
.....++-.+...+....++|++++.| +=.+++.|..+|.+.|.|++....+..-. . .......++++.|+
T Consensus 69 ~~~~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~ 147 (395)
T PF08596_consen 69 PPSLKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMT 147 (395)
T ss_dssp -TT-SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE
T ss_pred CcccccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEe
Confidence 000011223444555568899999987 45689999999999999998665544311 1 11233456777665
Q ss_pred --CCC---CeEEEEeCCCeEEEeecC
Q 020461 201 --ADG---SHFLTGSLDKSAKLWDAR 221 (326)
Q Consensus 201 --~~~---~~l~s~s~dg~i~iwd~~ 221 (326)
.|+ .++++|...|.+.+|.+-
T Consensus 148 ~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 148 LGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp -TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred cCCCcccceEEEEEeCCCCEEEEEEe
Confidence 233 469999999999999764
No 350
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.027 Score=49.15 Aligned_cols=146 Identities=22% Similarity=0.313 Sum_probs=82.5
Q ss_pred EEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCcc-ceeceeeeeeeeccCCCCCCCceEEEeccC
Q 020461 67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF-MELNSAIHVKRIARDPADQGGESVLILKGP 145 (326)
Q Consensus 67 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (326)
|.++.....+.--|++.|+.+..+.+...+....+.++.+..-...... +.++.. .+.++ ++-.++...+....+|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n-~vfri--DpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDN-SVFRI--DPRVQGKNKLAVVQSK 425 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCC-ceEEe--cccccCcceeeeeecc
Confidence 4455555667777999999999998877766666665544332222111 111110 00000 0101111122223333
Q ss_pred c----cceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461 146 Q----GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 146 ~----~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~ 220 (326)
+ ..-.|.+-.. ..+|+.||.+|.||+||. .+...++. .++-..+|+.+..+.+|+.+++.+. .++.+-|+
T Consensus 426 qy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AKTA--lPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAKTA--LPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred ccccccccceeeecC-CceEEEeecCCcEEeehh-hhhhhhhc--ccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 2 1122333333 357899999999999997 44443333 3456689999999999998877664 45555554
No 351
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.88 E-value=0.00032 Score=61.77 Aligned_cols=168 Identities=17% Similarity=0.205 Sum_probs=93.8
Q ss_pred eccCccceeEEEEecCCc-EEEEe----eCCCcEEEEECCCC--ccccccccccCcceeeEEEEEcCCCCeEEEEeCCCe
Q 020461 142 LKGPQGRINRAVWGPLNR-TIISA----GEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214 (326)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~-~l~s~----~~d~~i~~wd~~~~--~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~ 214 (326)
..++..+.++++|++... .|+.| -.|..+.|||+.++ -+........+......+++|..+.+.+++|.....
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~ 177 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS 177 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch
Confidence 345667788899998654 44444 23557999999876 221111111123344558899999999999999999
Q ss_pred EEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEE
Q 020461 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 294 (326)
Q Consensus 215 i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 294 (326)
++++|+|.............+.++...|.....+++..++ .++.+|... ..+ ......+.........+..+
T Consensus 178 ~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg--~iAiwD~~r-nie-----npl~~i~~~~N~~~~~l~~~ 249 (783)
T KOG1008|consen 178 VHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDG--DIAIWDTYR-NIE-----NPLQIILRNENKKPKQLFAL 249 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccC--ceeeccchh-hhc-----cHHHHHhhCCCCcccceeeE
Confidence 9999998432222222233566777787433333332222 244455211 000 00000011111112358999
Q ss_pred EECCCCc-eEEeecCC-CcEEEeec
Q 020461 295 AFNPDGK-SFSSGGED-GYVRLHHF 317 (326)
Q Consensus 295 ~~s~d~~-~lat~s~D-g~i~l~~~ 317 (326)
+|.|... .+|+.+.| ++|++...
T Consensus 250 aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 250 AYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred EeccCCcchhhhhccCcceEEEecc
Confidence 9999765 46767665 57777543
No 352
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.80 E-value=0.27 Score=41.98 Aligned_cols=293 Identities=18% Similarity=0.142 Sum_probs=113.9
Q ss_pred EEccCCCE-EEeecCCCCeEEE--ecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecC
Q 020461 17 KYNKDGDL-LFSCAKDHTPTVW--FADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD 93 (326)
Q Consensus 17 ~~s~~~~~-l~s~~~d~~v~iw--~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 93 (326)
+|.+||+. |+++..|+.-.+| |+++++..+-..+-........++++++.++=......++--|+++.+....+..+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 67889964 5555556665555 88888766544432222334556788777654445567788899888876666554
Q ss_pred CCcc-eeeee-c-CC-eEEEEEcCcc--ceec------------eeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461 94 SPAR-SVDFA-V-GD-KLAVITTDPF--MELN------------SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (326)
Q Consensus 94 ~~~~-~~~~~-~-~~-~~~~~~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (326)
..-. ...+. + +. +++.+-.... ..+. ....+..+. ..+++....+ .....+..+.|+
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id----l~tG~~~~v~-~~~~wlgH~~fs 196 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID----LKTGERKVVF-EDTDWLGHVQFS 196 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE----TTT--EEEEE-EESS-EEEEEEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE----CCCCceeEEE-ecCccccCcccC
Confidence 3322 22332 1 12 2221111000 0000 000000000 0122222222 234567889999
Q ss_pred cCCcEEEEee----CCC-cEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEe-----CCCeEEEeecCCcc
Q 020461 156 PLNRTIISAG----EDA-IVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGS-----LDKSAKLWDARTLE 224 (326)
Q Consensus 156 ~~~~~l~s~~----~d~-~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-----~dg~i~iwd~~~~~ 224 (326)
|....++.=+ .+. .-|||-+++ +...+.+... .....+..=-|.+||..+.--+ .+..|.-.|+.+++
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 9877555432 233 236676542 3333333222 1234455557899998766432 35567778888876
Q ss_pred eEEEEeeccceEEEEeCCCCCeeEEecCCC-cceeEeecc--cCceeeeEeecccceee---------eccccccCcc-e
Q 020461 225 LIKTYVTERPVNAVTMSPLLDHVVLGGGQD-ASAVTTTDH--RAGKFEAKFFDKILQEE---------IGGVKGHFGP-I 291 (326)
Q Consensus 225 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~d~--~~~~~~~~~~~~~~~~~---------~~~~~~h~~~-v 291 (326)
...-...+ ...-.-.+++++. +++-|.| ...+.-.+. -.....+++++...+.. ...+.+|.-. =
T Consensus 276 ~~~~~~~p-~~~H~~ss~Dg~L-~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~h 353 (386)
T PF14583_consen 276 RRRLMEMP-WCSHFMSSPDGKL-FVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTH 353 (386)
T ss_dssp EEEEEEE--SEEEEEE-TTSSE-EEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT-
T ss_pred ceEEEeCC-ceeeeEEcCCCCE-EEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCC
Confidence 54322222 2223334555544 4443332 221110000 00111233333322211 1112222111 1
Q ss_pred eEEEECCCCceE-EeecCCCcEEEeec
Q 020461 292 NALAFNPDGKSF-SSGGEDGYVRLHHF 317 (326)
Q Consensus 292 ~~v~~s~d~~~l-at~s~Dg~i~l~~~ 317 (326)
-...|||||+++ .++...|...|+-+
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CCCccCCCCCEEEEECCCCCCccEEEE
Confidence 358999999984 56666887777654
No 353
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.72 E-value=0.0032 Score=48.69 Aligned_cols=141 Identities=13% Similarity=0.064 Sum_probs=72.9
Q ss_pred EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEe
Q 020461 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 240 (326)
+..-+.|+.|+-++++..+.-.... .-|... ...-.-+..++.|+.||.|++|+...............-...++
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse--~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSE--RFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhh--hhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 4455678888887776543221111 112221 11123345799999999999998763211111111111112222
Q ss_pred CCCCCe--eEEecCCCcceeEeecccCceeeeEeecccceeeeccccccC-cceeEEEECCCCceEEee--cCCCcEEEe
Q 020461 241 SPLLDH--VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF-GPINALAFNPDGKSFSSG--GEDGYVRLH 315 (326)
Q Consensus 241 s~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~lat~--s~Dg~i~l~ 315 (326)
-|.++. +.+++.+++ +. +.+.......++....|. .++.....+..++.++.+ |.|..++.|
T Consensus 108 Ip~~~~~~~~c~~~~dg--------~i-----r~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W 174 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDG--------RI-----RACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKW 174 (238)
T ss_pred cccccccceeEEeccCC--------ce-----eeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhc
Confidence 333333 444333333 22 233333333334444555 566666666677788888 888888888
Q ss_pred ecCC
Q 020461 316 HFDP 319 (326)
Q Consensus 316 ~~~~ 319 (326)
++.+
T Consensus 175 ~ve~ 178 (238)
T KOG2444|consen 175 NVEK 178 (238)
T ss_pred chhh
Confidence 8865
No 354
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.69 E-value=0.3 Score=40.94 Aligned_cols=204 Identities=15% Similarity=0.153 Sum_probs=101.7
Q ss_pred eEEEEccCCCEEEee--cCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc-CCcEEEEE
Q 020461 14 TYLKYNKDGDLLFSC--AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE-TGAQLFTF 90 (326)
Q Consensus 14 ~~~~~s~~~~~l~s~--~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~ 90 (326)
..+++|.|+++++.. +--.+|.|-|++.++.+.++.- .+.....-.- .+.|.+-+.||++.-..+. .|+.....
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEEEecC--CCceEEEecCCceEEEEECCCCCEeEee
Confidence 345788999987763 3456788889888888776643 3333222222 2468899999999988887 45544221
Q ss_pred --ecCCCccee----eee-cCCeEEEEEcCcccee-------ceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 91 --NFDSPARSV----DFA-VGDKLAVITTDPFMEL-------NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 91 --~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
.++.....+ .+. .++.+...+-+..... ......|.+..+... +.- + ..+.-.-+++++
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~---~~~--W--rPGG~Q~~A~~~ 247 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK---ADG--W--RPGGWQLIAYHA 247 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH---HTT--E--EE-SSS-EEEET
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc---ccC--c--CCcceeeeeecc
Confidence 111111000 011 1222222221110000 000000110000000 000 0 011223355665
Q ss_pred CCcEEEEe---eCCC-------cEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEe-CCCeEEEeecCCcc
Q 020461 157 LNRTIISA---GEDA-------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGS-LDKSAKLWDARTLE 224 (326)
Q Consensus 157 ~~~~l~s~---~~d~-------~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s-~dg~i~iwd~~~~~ 224 (326)
..+.|+.. +.++ .|-++|+.+++.+..+.. ..++.++..+.+.+ +|++.+ .++.+.+||..+++
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 44433331 1222 377789999888776532 24577888888755 665554 58999999999999
Q ss_pred eEEEEee
Q 020461 225 LIKTYVT 231 (326)
Q Consensus 225 ~~~~~~~ 231 (326)
.++++..
T Consensus 324 ~~~~~~~ 330 (342)
T PF06433_consen 324 LVRSIEQ 330 (342)
T ss_dssp EEEEE--
T ss_pred EEeehhc
Confidence 9888753
No 355
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.26 Score=39.89 Aligned_cols=57 Identities=25% Similarity=0.393 Sum_probs=44.0
Q ss_pred EEEccCCCEEEeecCC-----CCeEEEecCCC-CeeeeccCcccceEEEEEcCCCCeEEEEeC
Q 020461 16 LKYNKDGDLLFSCAKD-----HTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72 (326)
Q Consensus 16 ~~~s~~~~~l~s~~~d-----~~v~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~ 72 (326)
=.|||||.+|.+.-+| |.|=|||...+ ..+.++..|.-.-..+.+.+||+.++.+..
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 4789999999887654 67789988755 567788888666667788999998877654
No 356
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.58 E-value=0.47 Score=41.84 Aligned_cols=96 Identities=17% Similarity=0.086 Sum_probs=54.0
Q ss_pred eeEEEEccCCCEEEee-cC----CCCeEEEecCCCCeeee-ccCcccceEEEEEcCCCCeEEEEeCCC-----------c
Q 020461 13 LTYLKYNKDGDLLFSC-AK----DHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDSMTLITGSADQ-----------T 75 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~-~~----d~~v~iw~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~s~~~d~-----------~ 75 (326)
+...++||||+++|-+ +. ...++++|+++|+.+.. +.. . .-..+.|.++++.|+-...+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-P-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-E-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-c-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3467899999987743 33 34599999999976542 221 1 112389999988765554333 2
Q ss_pred EEEEEccCCcE--EEEEecCCCc---ceeeeecCCeEEEE
Q 020461 76 AKLWNVETGAQ--LFTFNFDSPA---RSVDFAVGDKLAVI 110 (326)
Q Consensus 76 i~~wd~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~ 110 (326)
|..|.+.++.. ...++..... ..+..+.+.+.+++
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i 243 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFI 243 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEE
Confidence 67777766532 2344332222 23444555555444
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.56 E-value=0.46 Score=41.41 Aligned_cols=241 Identities=12% Similarity=0.070 Sum_probs=116.5
Q ss_pred ceeEEEEccCCCEEEeecCCCCeEEEecCCCCe-------------------------e------------------eec
Q 020461 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-------------------------L------------------GTY 48 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~-------------------------~------------------~~~ 48 (326)
.|+.++|+++..-|+.+-..|.|.||.....+. + ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 478999999988899999999999984421100 0 011
Q ss_pred cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCC---------Ccceeeeec----C-C---eEEEEE
Q 020461 49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS---------PARSVDFAV----G-D---KLAVIT 111 (326)
Q Consensus 49 ~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------~~~~~~~~~----~-~---~~~~~~ 111 (326)
....++|++++.|. --+++.|..+|.+.+.|++....++...... .+.+++|.. + . ..++++
T Consensus 83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 34478999999874 4488999999999999998777776643322 223444441 1 1 223333
Q ss_pred cCccceeceeeeeeeeccCC-CCCCCceEEEeccCccceeEEE-EecC--------------------CcEEEEeeCCCc
Q 020461 112 TDPFMELNSAIHVKRIARDP-ADQGGESVLILKGPQGRINRAV-WGPL--------------------NRTIISAGEDAI 169 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~~~~--------------------~~~l~s~~~d~~ 169 (326)
++.- .+....+.... .............+.++|..+. ++.+ -+.++....+..
T Consensus 162 Tn~G-----~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 162 TNSG-----NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp ETTS-----EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred eCCC-----CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 3211 01111111000 0000001111112223332222 2110 022344445667
Q ss_pred EEEEECCCCccccccccccCcceeeEEEEE-----cCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-----ceEEEE
Q 020461 170 VRIWDTETGKLLKESDKETGHKKTITSLAK-----AADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-----PVNAVT 239 (326)
Q Consensus 170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~-----s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~ 239 (326)
+|++...+.+...... ........+.+ ...+..|++-..+|.++++.+=..+.+....... .....+
T Consensus 237 irv~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 237 IRVFKPPKSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp EEEE-TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred eEEEeCCCCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 9999987766544322 11112222233 2356678888899999999987766666654322 244566
Q ss_pred eCCCCCeeEEecCCCcceeEee
Q 020461 240 MSPLLDHVVLGGGQDASAVTTT 261 (326)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~~~ 261 (326)
++++|+.++..+-.+...+..+
T Consensus 314 is~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 314 ISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp E-TTS-EEEE-SSSEEEEEEEE
T ss_pred ECCCCCEEEEeCcccEEEEEEE
Confidence 7888888777665554444444
No 358
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.41 E-value=0.63 Score=42.93 Aligned_cols=186 Identities=11% Similarity=0.172 Sum_probs=91.4
Q ss_pred CceeEEEEccCCCEEEeec------CCCCeEEEecC-CCCeeeeccCcccceEEEEEcCCCCeEEEEeCC-CcEEEE---
Q 020461 11 RPLTYLKYNKDGDLLFSCA------KDHTPTVWFAD-NGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-QTAKLW--- 79 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~------~d~~v~iw~~~-~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d-~~i~~w--- 79 (326)
..+...+.||||+.++..- .|..-.||-.. .+.......+. ......|+|||+.+++.+.. ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 3567889999999877655 35444566432 22222222332 37788999998877766532 122222
Q ss_pred --------EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCc-eE----EEeccCc
Q 020461 80 --------NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE-SV----LILKGPQ 146 (326)
Q Consensus 80 --------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~ 146 (326)
++..++... .++..+..+.++++...++...+ ..+.+-.+.+.. .+. .+ ....+..
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~------g~v~Va~Vvr~~---~G~~~l~~~~~l~~~l~ 496 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG------GKVYLAVVEQTE---DGQYALTNPREVGPGLG 496 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC------CEEEEEEEEeCC---CCceeecccEEeecccC
Confidence 333333222 33456778888876654443222 122222223311 122 11 1112233
Q ss_pred cceeEEEEecCCcEEEEeeCCCcEEEEECC-CCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC
Q 020461 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213 (326)
Q Consensus 147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg 213 (326)
..+..+.|.+++.++ .+..++.-.+|.+. .|.....+ ........+.+++-+++ .++....++
T Consensus 497 ~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 497 DTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred CccccceEecCCEEE-EEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCc
Confidence 345778899988854 44555544555543 12221111 11112345666665542 344444454
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.29 E-value=0.59 Score=39.65 Aligned_cols=195 Identities=13% Similarity=0.132 Sum_probs=100.0
Q ss_pred CeEEEecCCCCeeeeccCc-ccceEE---EEEcCC----CCeEEEEeC----------CCcEEEEEccCC-----cE--E
Q 020461 33 TPTVWFADNGERLGTYRGH-NGAVWC---CDVSRD----SMTLITGSA----------DQTAKLWNVETG-----AQ--L 87 (326)
Q Consensus 33 ~v~iw~~~~~~~~~~~~~h-~~~V~~---~~~~~~----~~~l~s~~~----------d~~i~~wd~~~~-----~~--~ 87 (326)
.|++.|..+.+.+.++.-. ...+.+ +.+..+ ..+++.|.. .|.|.++++... +. +
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5677777777766554322 223343 334432 356666553 288999999884 22 2
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 167 (326)
.....+.++.++... ++.++++.+. .+.+.++.... .-.....+. ....+.++. ..+.+++.|..-
T Consensus 83 ~~~~~~g~V~ai~~~-~~~lv~~~g~-------~l~v~~l~~~~---~l~~~~~~~-~~~~i~sl~--~~~~~I~vgD~~ 148 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGRLVVAVGN-------KLYVYDLDNSK---TLLKKAFYD-SPFYITSLS--VFKNYILVGDAM 148 (321)
T ss_dssp EEEEESS-EEEEEEE-TTEEEEEETT-------EEEEEEEETTS---SEEEEEEE--BSSSEEEEE--EETTEEEEEESS
T ss_pred EEEeecCcceEhhhh-CCEEEEeecC-------EEEEEEccCcc---cchhhheec-ceEEEEEEe--ccccEEEEEEcc
Confidence 233456666666544 4444444332 22223332211 001111111 112344443 335688888888
Q ss_pred CcEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC-----------cceEEEEeeccce
Q 020461 168 AIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-----------LELIKTYVTERPV 235 (326)
Q Consensus 168 ~~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~-----------~~~~~~~~~~~~~ 235 (326)
..+.++.... ...+..+... .....++++.+-+++..++.+..+|.+.++.... .+....+..+..+
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d-~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v 227 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARD-YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIV 227 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEE-SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-E
T ss_pred cCEEEEEEEccCCEEEEEEec-CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCcc
Confidence 8888774432 2223222222 2245588888876667999999999999987652 1234445556677
Q ss_pred EEE---EeCC
Q 020461 236 NAV---TMSP 242 (326)
Q Consensus 236 ~~~---~~s~ 242 (326)
+++ ++.|
T Consensus 228 ~~~~~~~l~~ 237 (321)
T PF03178_consen 228 NSFRRGSLIP 237 (321)
T ss_dssp EEEEE--SS-
T ss_pred ceEEEEEeee
Confidence 777 5555
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.27 E-value=0.56 Score=39.30 Aligned_cols=226 Identities=12% Similarity=0.121 Sum_probs=113.4
Q ss_pred EEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe-cC-
Q 020461 17 KYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FD- 93 (326)
Q Consensus 17 ~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~- 93 (326)
.|.++.+ ++.+--..+.|.-|+..+++.. .+.. .+.+.++..-.++..|+++ ..+ +.+++.+++..+..+. ..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-p~~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-PGGFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-CCCcccceeecCCCeEEEE-ccc-cEEEeccCCceeEEeccccC
Confidence 4556666 4445556667777776655321 2222 2223333333334445444 333 4677776665532221 11
Q ss_pred ----CCcceeeeecCCeEEEEEcCc----cceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461 94 ----SPARSVDFAVGDKLAVITTDP----FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (326)
Q Consensus 94 ----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 165 (326)
...+.....+...+.+..... .......-.++++.. .+.......++-..-+.++|||+++.|+.+-
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-----~g~~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-----DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-----CCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence 111222333333443332220 000000001111110 1233333444444557799999998777664
Q ss_pred C-CCcEEEEECCC--Cccccc--cccccCcceeeEEEEEcCCCCeEEEEeCCC-eEEEeecCCcceEEEEeec-cceEEE
Q 020461 166 E-DAIVRIWDTET--GKLLKE--SDKETGHKKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTE-RPVNAV 238 (326)
Q Consensus 166 ~-d~~i~~wd~~~--~~~~~~--~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~-~~~~~~ 238 (326)
. .+.|.-|+... +..-.. ........+..-.++.+.+|.+-+++-.+| .|..|+.+ ++.+..+..+ ..+.++
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence 4 57788887652 211110 000111234455677788887776555554 89999999 8888888765 566666
Q ss_pred EeC-CCCCeeEEecC
Q 020461 239 TMS-PLLDHVVLGGG 252 (326)
Q Consensus 239 ~~s-~~~~~~~~~~~ 252 (326)
+|- ++.+.+++++.
T Consensus 261 ~FgG~~~~~L~iTs~ 275 (307)
T COG3386 261 AFGGPDLNTLYITSA 275 (307)
T ss_pred eEeCCCcCEEEEEec
Confidence 664 55566665543
No 361
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.27 E-value=0.44 Score=38.09 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=51.7
Q ss_pred CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEE-EEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF 92 (326)
Q Consensus 22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 92 (326)
|++++.|...|.+++-+.++|+..-.+..-. .|.+ ....+++..+..++.|++....|..+-.++++.+.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 5667778888888888888887766554422 2222 22456788999999999999999998888776554
No 362
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.22 E-value=0.69 Score=39.83 Aligned_cols=71 Identities=15% Similarity=0.047 Sum_probs=43.1
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeee-eccCc----------------ccceEEEEEcCCCCeEEEEeC
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGH----------------NGAVWCCDVSRDSMTLITGSA 72 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~-~~~~h----------------~~~V~~~~~~~~~~~l~s~~~ 72 (326)
...+....|||+|+.+|-... +.+.+++..++...+ +..|- -+.-.++.||||+++|+..-.
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEec-CceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 356788999999999887754 678888877664432 22220 011245779999998877664
Q ss_pred -CCcEEEEEc
Q 020461 73 -DQTAKLWNV 81 (326)
Q Consensus 73 -d~~i~~wd~ 81 (326)
+..|+.+.+
T Consensus 121 d~~~v~~~~~ 130 (353)
T PF00930_consen 121 DEREVPEYPL 130 (353)
T ss_dssp E-TTS-EEEE
T ss_pred CCcCCceEEe
Confidence 455555543
No 363
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.11 Score=49.52 Aligned_cols=73 Identities=19% Similarity=0.378 Sum_probs=55.2
Q ss_pred CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEee
Q 020461 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (326)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd 219 (326)
.+++|++++|+.+|..++.|-.+|.|.+||+..++..+.+.........+..+.+..++..++++...|. +|.
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 3578999999999999999999999999999988877665432222233445556667778889888885 554
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.83 Score=39.80 Aligned_cols=203 Identities=17% Similarity=0.154 Sum_probs=121.6
Q ss_pred eEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeecc-CcccceEEEEEcCCCCeEEEEeC---CCcEEEEEccCCcEEE
Q 020461 14 TYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLF 88 (326)
Q Consensus 14 ~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~ 88 (326)
..+++++.++ .++....+..|.+.|..+........ +. .-..++++++++.+..+.. ++++.+.|..+++.+.
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 4667788887 55666667899999977666554432 22 4456889999987766665 6888888888888776
Q ss_pred EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE-----eccCccceeEEEEecCCcEEEE
Q 020461 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-----LKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~s 163 (326)
..........+.+.+....+.+.... ...+.+..... ..+.. ...-......+.++|++..+..
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~----~~~v~vi~~~~-------~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSD----DNTVSVIDTSG-------NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYV 223 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecC----CCeEEEEeCCC-------cceeccccccccccCCCCceEEECCCCCEEEE
Confidence 64332222455556555533333211 11111111110 00110 0011122345778999986554
Q ss_pred eeCC---CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecCCcceEEEEee
Q 020461 164 AGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIKTYVT 231 (326)
Q Consensus 164 ~~~d---~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~ 231 (326)
.... +.+...|..++....... ..+-. ....+..+|+|.++.+... .+.+.+-|..+.........
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~-~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDL-PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEecc-ccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 4333 589999988776554311 11222 4567889999999888854 48899999988877776543
No 365
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.026 Score=53.30 Aligned_cols=70 Identities=24% Similarity=0.411 Sum_probs=55.8
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEE---EcCCCCeEEEEeCCCcEEEEEcc
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD---VSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~---~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
.+|++++|+.+|.+++.|-.+|.|.+||..++...+.+..|..++..+- +..++..++++..-|. +|.+.
T Consensus 131 ~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 131 GPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 5799999999999999999999999999999998888887777655543 3334456777777775 67653
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.94 E-value=0.32 Score=33.52 Aligned_cols=55 Identities=15% Similarity=0.356 Sum_probs=41.8
Q ss_pred cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~ 220 (326)
..|+.|++|..||+|+-. +.+.++. -...|++++.... ..++.+..+|+|-+|+.
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~----e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEIT----ETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEe----cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 478999999999999854 3444433 2456888887766 57999999999988875
No 367
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.83 E-value=0.78 Score=37.16 Aligned_cols=185 Identities=13% Similarity=0.070 Sum_probs=104.9
Q ss_pred CceeEEEEccCCCEEEeecCCC--CeEEEecCCCCeeeeccCccc-ceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHNG-AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~--~v~iw~~~~~~~~~~~~~h~~-~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
.....+.|..+|.++-|++.-| .|+.+|+++++......-... .=..++... ++...-.=.+++..+||.++-+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEE
Confidence 3456888888899999988766 788899999987654322111 112333332 333334456778889999887776
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 167 (326)
..+.++.....+. .++..|+.....
T Consensus 124 ~~~~y~~EGWGLt-------------------------------------------------------~dg~~Li~SDGS 148 (264)
T PF05096_consen 124 GTFPYPGEGWGLT-------------------------------------------------------SDGKRLIMSDGS 148 (264)
T ss_dssp EEEE-SSS--EEE-------------------------------------------------------ECSSCEEEE-SS
T ss_pred EEEecCCcceEEE-------------------------------------------------------cCCCEEEEECCc
Confidence 6665432211111 123344544455
Q ss_pred CcEEEEECCCCccccccccccCccee---eEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-------------
Q 020461 168 AIVRIWDTETGKLLKESDKETGHKKT---ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT------------- 231 (326)
Q Consensus 168 ~~i~~wd~~~~~~~~~~~~~~~h~~~---v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------- 231 (326)
..|..+|..+.+..+.+... ....+ +..+-+- +|...|-.=....|..-|+.+|+.+..+..
T Consensus 149 ~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~ 226 (264)
T PF05096_consen 149 SRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSR 226 (264)
T ss_dssp SEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST
T ss_pred cceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccc
Confidence 66777777665554443321 11122 3334443 454444444556777888888888776531
Q ss_pred ---ccceEEEEeCCCCCeeEEecCC
Q 020461 232 ---ERPVNAVTMSPLLDHVVLGGGQ 253 (326)
Q Consensus 232 ---~~~~~~~~~s~~~~~~~~~~~~ 253 (326)
..-.|++++.|..+.++++|..
T Consensus 227 ~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 227 QPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp --TTS-EEEEEEETTTTEEEEEETT
T ss_pred cccCCeeEeEeEeCCCCEEEEEeCC
Confidence 1237899999999998887753
No 368
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.83 E-value=1.8 Score=41.33 Aligned_cols=136 Identities=19% Similarity=0.263 Sum_probs=78.9
Q ss_pred cEEEEECCCCccccccccc-cCcceeeEEEEEcCC-CCeEEEEeC----------CCeEEEeecCCc---ceEEEEeecc
Q 020461 169 IVRIWDTETGKLLKESDKE-TGHKKTITSLAKAAD-GSHFLTGSL----------DKSAKLWDARTL---ELIKTYVTER 233 (326)
Q Consensus 169 ~i~~wd~~~~~~~~~~~~~-~~h~~~v~~v~~s~~-~~~l~s~s~----------dg~i~iwd~~~~---~~~~~~~~~~ 233 (326)
.++++|.++.+.+...... ...-..+.++.+..| +.+++.|.. .|.|.++.+... +.+.+.....
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 3677777766544322111 011123455557666 777887763 466777766552 2222222222
Q ss_pred ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461 234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 313 (326)
Q Consensus 234 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~ 313 (326)
.+.+ +-.....++++.+. .+++|+....+++...-.|..++..+.....|..+|.|.--+.+.
T Consensus 831 av~a--L~~fngkllA~In~---------------~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sit 893 (1096)
T KOG1897|consen 831 AVYA--LVEFNGKLLAGINQ---------------SVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSIT 893 (1096)
T ss_pred ceee--hhhhCCeEEEecCc---------------EEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEE
Confidence 2222 22222334443322 345555555555555566778899999988999999999999999
Q ss_pred EeecCCCc
Q 020461 314 LHHFDPDY 321 (326)
Q Consensus 314 l~~~~~~~ 321 (326)
+-.+++..
T Consensus 894 ll~y~~~e 901 (1096)
T KOG1897|consen 894 LLQYKGDE 901 (1096)
T ss_pred EEEEeccC
Confidence 98777665
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.80 E-value=0.36 Score=44.47 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=83.5
Q ss_pred ceeEEEEecCCcEEEEee------CCCc--EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-------
Q 020461 148 RINRAVWGPLNRTIISAG------EDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD------- 212 (326)
Q Consensus 148 ~i~~~~~~~~~~~l~s~~------~d~~--i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d------- 212 (326)
.+...+++|+++.++..- .|+. |.+++.. +.. ..+. .+ ...+.-.|+|||..+++.+..
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt--~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVL--EG--HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeee--cC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence 466788999998776544 3444 4444542 222 2221 12 236777899998877776532
Q ss_pred -----CeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEe-ecccCceeeeEeecccceeeeccccc
Q 020461 213 -----KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTT-TDHRAGKFEAKFFDKILQEEIGGVKG 286 (326)
Q Consensus 213 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~ 286 (326)
+.+.+.+++.++... .....+..+.+||+|..+++..+ ....+.. .....+. ..+-. ..++. .+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~-g~v~Va~Vvr~~~G~--~~l~~---~~~l~--~~ 494 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG-GKVYLAVVEQTEDGQ--YALTN---PREVG--PG 494 (591)
T ss_pred ccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC-CEEEEEEEEeCCCCc--eeecc---cEEee--cc
Confidence 233333454444332 22456899999999998876542 2222211 1111121 11100 01111 12
Q ss_pred cCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 287 HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 287 h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
-...+.+++|.+++..+ .+..++...+|.+.-+
T Consensus 495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLD 527 (591)
T ss_pred cCCccccceEecCCEEE-EEecCCCCceEEEecC
Confidence 22346789999988854 5555666666665544
No 370
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.79 E-value=1.2 Score=38.82 Aligned_cols=153 Identities=15% Similarity=0.107 Sum_probs=65.6
Q ss_pred cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC--------------------CCeEEEeecCCcceEEE
Q 020461 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL--------------------DKSAKLWDARTLELIKT 228 (326)
Q Consensus 169 ~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~--------------------dg~i~iwd~~~~~~~~~ 228 (326)
.+.+.|-++.+.........+...--..+-+.|..+.++|... ..++.+||+.+.+.+++
T Consensus 158 gf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~ 237 (461)
T PF05694_consen 158 GFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT 237 (461)
T ss_dssp EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred cEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence 4555555544333322221111222344455666666666542 45899999999999999
Q ss_pred Eeecc---ceEEEE--eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeee---------ccccccCcceeEE
Q 020461 229 YVTER---PVNAVT--MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEI---------GGVKGHFGPINAL 294 (326)
Q Consensus 229 ~~~~~---~~~~~~--~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---------~~~~~h~~~v~~v 294 (326)
+.... .+-.+- ..|....-+++..-...++..+....+.+..+..-....+++ ..+..-.+-|++|
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI 317 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI 317 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence 86542 122333 346666555544333333333332334443322211111111 1111112457999
Q ss_pred EECCCCceEEeecC-CCcEEEeecCCCc
Q 020461 295 AFNPDGKSFSSGGE-DGYVRLHHFDPDY 321 (326)
Q Consensus 295 ~~s~d~~~lat~s~-Dg~i~l~~~~~~~ 321 (326)
.+|.|.++|..+.. +|.||.+++.+-+
T Consensus 318 ~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 318 LISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred EEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 99999999866555 9999998876543
No 371
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.65 E-value=1.1 Score=39.37 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=26.6
Q ss_pred CcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 288 FGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 288 ~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
.+++..|+.||+|+++|.-..+|.+.+.+-|
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 3579999999999999999999998886543
No 372
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.57 E-value=1.9 Score=39.74 Aligned_cols=224 Identities=14% Similarity=0.101 Sum_probs=99.5
Q ss_pred cCCCEEEeecCC------CCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCC------CcEEEEEccCCcE
Q 020461 20 KDGDLLFSCAKD------HTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSAD------QTAKLWNVETGAQ 86 (326)
Q Consensus 20 ~~~~~l~s~~~d------~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~ 86 (326)
..+.+++.||.+ .++..+|..++.......- +...-.++++. ++...++||.| .++..||..+++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~- 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ- 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-
Confidence 345566777766 3667788877755432221 22223334433 45777888888 346677776655
Q ss_pred EEEEe-cCCCcceeeee-cCCeEEEEEcCccceeceeeeeeeecc-CCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 87 LFTFN-FDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 87 ~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
..... ...+-...... .++.+.++++.........++..+... .+.... .-....-...+..-.+...+.
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-------~m~~~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-------PMLTRRSGHGVAVLGGKLYII 433 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC-------CCCcceeeeEEEEECCEEEEE
Confidence 22111 11111111111 234444444322111111111111111 010000 000011111122234566777
Q ss_pred eeCCC------cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCe-----EEEeecCCcceEEEEeec
Q 020461 164 AGEDA------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-----AKLWDARTLELIKTYVTE 232 (326)
Q Consensus 164 ~~~d~------~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~ 232 (326)
||.++ ++..||..+.+... .....--+. -..++ .-++...+.|+.|+. +..+|.++.+=..--...
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~-~~~M~~~R~-~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTL-IAPMNTRRS-GFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceee-cCCcccccc-cceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 77555 46788887765432 111100001 11122 235667778887763 666787765432221122
Q ss_pred cceEEEEeCCCCCeeEEecCCCc
Q 020461 233 RPVNAVTMSPLLDHVVLGGGQDA 255 (326)
Q Consensus 233 ~~~~~~~~s~~~~~~~~~~~~~~ 255 (326)
.+.........++.+++.||.++
T Consensus 511 ~~rs~~g~~~~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 511 SPRSAVGVVVLGGKLYAVGGFDG 533 (571)
T ss_pred cccccccEEEECCEEEEEecccC
Confidence 23334444445566777666554
No 373
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.41 E-value=1.4 Score=37.13 Aligned_cols=271 Identities=15% Similarity=0.139 Sum_probs=136.1
Q ss_pred CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe----------CCCcEEEEEccCCcEEEEEecCCCc-----
Q 020461 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETGAQLFTFNFDSPA----- 96 (326)
Q Consensus 32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~~~~----- 96 (326)
+.+.+.|..+++.+..+.+ +..-.+..+|+++.+++++ ..-.|.+||.++-.....+..+...
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4788999988888776653 2223355789999888754 2446899999987776665544321
Q ss_pred ---ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC-CcEEEEeeCCCcEEE
Q 020461 97 ---RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDAIVRI 172 (326)
Q Consensus 97 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~~ 172 (326)
....++.+++.+.+.. +.....+.+-++.. .+-+..+.-+ . |.-.=|. .+.|.+-+.||++.-
T Consensus 95 ~~~~~~~ls~dgk~~~V~N---~TPa~SVtVVDl~~------~kvv~ei~~P--G--C~~iyP~~~~~F~~lC~DGsl~~ 161 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQN---FTPATSVTVVDLAA------KKVVGEIDTP--G--CWLIYPSGNRGFSMLCGDGSLLT 161 (342)
T ss_dssp --GGGEEE-TTSSEEEEEE---ESSSEEEEEEETTT------TEEEEEEEGT--S--EEEEEEEETTEEEEEETTSCEEE
T ss_pred ccccceEEccCCcEEEEEc---cCCCCeEEEEECCC------CceeeeecCC--C--EEEEEecCCCceEEEecCCceEE
Confidence 1223444555443321 01111222222211 1111111111 0 1111122 246788889999988
Q ss_pred EECC-CCcccccccc--ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce--EEEEeec-----------cceE
Q 020461 173 WDTE-TGKLLKESDK--ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTYVTE-----------RPVN 236 (326)
Q Consensus 173 wd~~-~~~~~~~~~~--~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~-----------~~~~ 236 (326)
..+. .|+....... ...+......-+++..+..++=-+.+|.|+--|+..... ...+... .--.
T Consensus 162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q 241 (342)
T PF06433_consen 162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQ 241 (342)
T ss_dssp EEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS
T ss_pred EEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCccee
Confidence 8886 4443321100 011111122223444444555577788888877765432 1112110 1123
Q ss_pred EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc-eEE-eecCCCcEEE
Q 020461 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFS-SGGEDGYVRL 314 (326)
Q Consensus 237 ~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~la-t~s~Dg~i~l 314 (326)
-+++++..+.+++.-..+. -..+....-+++.++..+++.+..+.. ..++.+|+.+-|.+ .|. ....++.+.+
T Consensus 242 ~~A~~~~~~rlyvLMh~g~----~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v 316 (342)
T PF06433_consen 242 LIAYHAASGRLYVLMHQGG----EGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDV 316 (342)
T ss_dssp -EEEETTTTEEEEEEEE------TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred eeeeccccCeEEEEecCCC----CCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEE
Confidence 4566665555443211110 122334445677777777777665542 24688999987765 554 4456899999
Q ss_pred eecCCCce
Q 020461 315 HHFDPDYF 322 (326)
Q Consensus 315 ~~~~~~~~ 322 (326)
|+....-+
T Consensus 317 ~D~~tGk~ 324 (342)
T PF06433_consen 317 YDAATGKL 324 (342)
T ss_dssp EETTT--E
T ss_pred EeCcCCcE
Confidence 88765433
No 374
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.21 E-value=0.4 Score=41.82 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=61.4
Q ss_pred eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccc-eEEEEEc-CC----------------CCeEE
Q 020461 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA-VWCCDVS-RD----------------SMTLI 68 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~-V~~~~~~-~~----------------~~~l~ 68 (326)
....-.+.+++.+|++++.|+..+-|.|.++|+.++..++.++|...+ +.-+... +. ..+|+
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 334445789999999998888888899999999999999999886542 3222111 11 12333
Q ss_pred E-EeCCCcEEEEEccCCcEEEEEec
Q 020461 69 T-GSADQTAKLWNVETGAQLFTFNF 92 (326)
Q Consensus 69 s-~~~d~~i~~wd~~~~~~~~~~~~ 92 (326)
. +-.-|.|.+|.++.|..+..+..
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEe
Confidence 3 45678999999999988776643
No 375
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.16 E-value=0.094 Score=29.09 Aligned_cols=35 Identities=14% Similarity=0.384 Sum_probs=28.8
Q ss_pred cceeEEEECCCCc---eEEeecCCCcEEEeecCCCcee
Q 020461 289 GPINALAFNPDGK---SFSSGGEDGYVRLHHFDPDYFN 323 (326)
Q Consensus 289 ~~v~~v~~s~d~~---~lat~s~Dg~i~l~~~~~~~~~ 323 (326)
+.|.++.|||+.. +||-+-.-|.|.|++.+.+|-+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~~ 38 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFMR 38 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCccc
Confidence 3589999998554 8898899999999999976643
No 376
>PHA02713 hypothetical protein; Provisional
Probab=94.99 E-value=2.9 Score=38.55 Aligned_cols=63 Identities=6% Similarity=0.092 Sum_probs=33.7
Q ss_pred CCcEEEEeeCC------CcEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeCCC--eEEEeecCC
Q 020461 157 LNRTIISAGED------AIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--SAKLWDART 222 (326)
Q Consensus 157 ~~~~l~s~~~d------~~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg--~i~iwd~~~ 222 (326)
+++..+.||.+ ..+..||..+ .+... +............+. -++...+.|+.|+ .+..||+.+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~-~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL-ITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeE-ccccCcccccceeEE--ECCEEEEEeeecceeehhhcCccc
Confidence 35556667654 2467899886 44321 222211222222222 2677888999888 555566554
No 377
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.71 E-value=0.51 Score=41.63 Aligned_cols=111 Identities=8% Similarity=-0.007 Sum_probs=60.4
Q ss_pred eeEEEEEcCCCCeEEEE-eCCC----eEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCce
Q 020461 193 TITSLAKAADGSHFLTG-SLDK----SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK 267 (326)
Q Consensus 193 ~v~~v~~s~~~~~l~s~-s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~ 267 (326)
.+....+||+|++++-+ +..| ++++.|+++++.+...........+.|.++++.++.....+..... .....
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~---~~~~~ 201 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTS---DSGYP 201 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS----CCGCC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccc---cCCCC
Confidence 34467899999988854 3333 5999999999887664333333449999998877655332210000 00012
Q ss_pred eeeEeecccceee--eccccccCc--ceeEEEECCCCceEEee
Q 020461 268 FEAKFFDKILQEE--IGGVKGHFG--PINALAFNPDGKSFSSG 306 (326)
Q Consensus 268 ~~~~~~~~~~~~~--~~~~~~h~~--~v~~v~~s~d~~~lat~ 306 (326)
..++++...+... .-.+.+... ....+..++|+++|+..
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~ 244 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFIS 244 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEE
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEE
Confidence 2334443322111 011122222 25678899999986543
No 378
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.68 E-value=1.9 Score=34.96 Aligned_cols=129 Identities=15% Similarity=0.114 Sum_probs=74.9
Q ss_pred eeeeccCc-ccceEEEEEcCCCCeEEEEeCCC--cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceece
Q 020461 44 RLGTYRGH-NGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120 (326)
Q Consensus 44 ~~~~~~~h-~~~V~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
.+.++... ....-.+.|.+++.++-+.|.-| .|+.+|+.+++.......+.... .
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F----g------------------ 92 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF----G------------------ 92 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------E------------------
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc----c------------------
Confidence 34444432 23466788877888888888665 68899999998765544332110 0
Q ss_pred eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEc
Q 020461 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 200 (326)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s 200 (326)
+-+..+ . ++...---.++...+||.++-+.+.++.. ...-..++
T Consensus 93 ----------------EGit~~---~-----------d~l~qLTWk~~~~f~yd~~tl~~~~~~~y----~~EGWGLt-- 136 (264)
T PF05096_consen 93 ----------------EGITIL---G-----------DKLYQLTWKEGTGFVYDPNTLKKIGTFPY----PGEGWGLT-- 136 (264)
T ss_dssp ----------------EEEEEE---T-----------TEEEEEESSSSEEEEEETTTTEEEEEEE-----SSS--EEE--
T ss_pred ----------------eeEEEE---C-----------CEEEEEEecCCeEEEEccccceEEEEEec----CCcceEEE--
Confidence 000000 0 12223345677888999988777665532 22334555
Q ss_pred CCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 201 ADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 201 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
.|+..|+...-...|+++|.++.+..+.+.
T Consensus 137 ~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 137 SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred cCCCEEEEECCccceEEECCcccceEEEEE
Confidence 456677777667889999999998888775
No 379
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.63 E-value=2.6 Score=36.28 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=44.9
Q ss_pred ccCCCEEEee---------cCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461 19 NKDGDLLFSC---------AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (326)
Q Consensus 19 s~~~~~l~s~---------~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 86 (326)
|||+++++.. +..+.+.|+|+++++....... ...+....|||+|+.++-.. ++-|.+++..+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 5788776652 2346778899998776544443 56788889999999876654 46788888777643
No 380
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=3.2 Score=36.17 Aligned_cols=186 Identities=12% Similarity=0.093 Sum_probs=108.3
Q ss_pred EEEEEcCCCCe-EEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCC
Q 020461 56 WCCDVSRDSMT-LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134 (326)
Q Consensus 56 ~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (326)
..+++++.+.. .+....+..|.+.|..+.+.............+.+.+..+.+.+..... .+..+.+.+ ..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~--~~~~vsvid------~~ 148 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN--GNNTVSVID------AA 148 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc--CCceEEEEe------CC
Confidence 45677787774 4445556889999987776665554443445555665554433332211 011111110 01
Q ss_pred CCceEEEeccCccceeEEEEecCCcEEEEe-eCCCcEEEEECCCCcccc-ccccccCcceeeEEEEEcCCCCeEEEEeCC
Q 020461 135 GGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLD 212 (326)
Q Consensus 135 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d 212 (326)
.............+ ..++++|++..++.. ..+++|.+.|.......+ ......+-......+.++++|.++......
T Consensus 149 t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 149 TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence 12222222222223 678899999866544 578999999976554432 100011222344678899999976665543
Q ss_pred ---CeEEEeecCCcceEEE-Eeecc-ceEEEEeCCCCCeeEEe
Q 020461 213 ---KSAKLWDARTLELIKT-YVTER-PVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 213 ---g~i~iwd~~~~~~~~~-~~~~~-~~~~~~~s~~~~~~~~~ 250 (326)
+.+...|..++..... ...+. ....+..+|.+....+.
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVA 270 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEE
Confidence 5899999998877766 23233 46678889998887765
No 381
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.99 E-value=3.9 Score=35.74 Aligned_cols=155 Identities=15% Similarity=0.149 Sum_probs=65.7
Q ss_pred ccCCCEEEeec------CCCCeEEEecCCCCeeeeccCccc-c--eEEEEEcCCCCeEEEEeC-----------------
Q 020461 19 NKDGDLLFSCA------KDHTPTVWFADNGERLGTYRGHNG-A--VWCCDVSRDSMTLITGSA----------------- 72 (326)
Q Consensus 19 s~~~~~l~s~~------~d~~v~iw~~~~~~~~~~~~~h~~-~--V~~~~~~~~~~~l~s~~~----------------- 72 (326)
-|+|++++|+- .-|-+.+.|-++.+.....+...+ . -....+.|..+.++|...
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 37898888743 224556777777777666654322 1 233445565556666543
Q ss_pred ---CCcEEEEEccCCcEEEEEecCCC---cceeeeecC--CeEEEEEcCccceeceeeeeeeeccCCC-CCCCceEEEec
Q 020461 73 ---DQTAKLWNVETGAQLFTFNFDSP---ARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPA-DQGGESVLILK 143 (326)
Q Consensus 73 ---d~~i~~wd~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 143 (326)
-.++.+||+.+.+.++++..... ...+.|..+ .....++.. + ...++...++.. .-..+.+..+.
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a----L--ss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA----L--SSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--------EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe----c--cceEEEEEEcCCCCeeeeEEEECC
Confidence 46799999999999988876432 223344432 221111110 0 001111111000 00001111110
Q ss_pred -----------------cCccceeEEEEecCCcEEE-EeeCCCcEEEEECCCCc
Q 020461 144 -----------------GPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGK 179 (326)
Q Consensus 144 -----------------~~~~~i~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~ 179 (326)
.-..-|+.+..|.|.++|. ++-..|.|+-||+....
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 1134578899999999875 56669999999997643
No 382
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.98 E-value=0.11 Score=40.57 Aligned_cols=63 Identities=27% Similarity=0.173 Sum_probs=45.8
Q ss_pred CCCEEEeecCCCCeEEEecCCCCeeeeccCcc-cceEEEEEcCCCCeEEEE--eCCCcEEEEEccC
Q 020461 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITG--SADQTAKLWNVET 83 (326)
Q Consensus 21 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~--~~d~~i~~wd~~~ 83 (326)
++.+..+++.|+.+|.|+.+-.+.+...-.|. .++.....+..++.++.+ |.|..++.|++..
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 34567788899999999998888777666677 455555555556667666 7777777777653
No 383
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.82 E-value=1.1 Score=41.34 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=58.0
Q ss_pred EEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee--ccceEEEEeC--CCCCeeEEecCCCcceeEeecccCcee-eeE
Q 020461 197 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTMS--PLLDHVVLGGGQDASAVTTTDHRAGKF-EAK 271 (326)
Q Consensus 197 v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~s--~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~ 271 (326)
+.-+.-++..+.-+...++.|||.+.+....+... ...|..+.|. |++..+++. |.....+-..-.|.... ...
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaV-Gf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAV-GFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEE-EcCcEEEEEEccchhhhcCCc
Confidence 33344444444444556799999998876555433 5678888875 555554443 34333332222221000 000
Q ss_pred eecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE
Q 020461 272 FFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314 (326)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l 314 (326)
-|.......+..+.. .+|.+..|-++|..++.++ +.+.|
T Consensus 114 ~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV~sG--Nqlfv 152 (631)
T PF12234_consen 114 SWAPIRKIDISSHTP--HPIGDSIWLKDGTLVVGSG--NQLFV 152 (631)
T ss_pred ccceeEEEEeecCCC--CCccceeEecCCeEEEEeC--CEEEE
Confidence 111111111222233 4799999999998876443 44444
No 384
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.39 E-value=0.58 Score=25.63 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=27.5
Q ss_pred CCCCeEEEEe-CCCeEEEeecCCcceEEEEeeccceEEEEe
Q 020461 201 ADGSHFLTGS-LDKSAKLWDARTLELIKTYVTERPVNAVTM 240 (326)
Q Consensus 201 ~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 240 (326)
|++++|.++. .+++|.++|..+++.+..+........+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4566666554 578999999999988887765544444443
No 385
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.33 E-value=0.14 Score=47.81 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=45.5
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEE-----------EcCCCCeEEEEeCCCeEEEeecC----
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA-----------KAADGSHFLTGSLDKSAKLWDAR---- 221 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~-----------~s~~~~~l~s~s~dg~i~iwd~~---- 221 (326)
..-++..+-.++.|++...++... .+. .+|+..++.++ .||||..|++++.||.+++|.+.
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~--~l~--rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR--SLF--RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH--HHH--HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecc
Confidence 445666777788888766544321 111 23655555443 68999999999999999888654
Q ss_pred -CcceEEEEe
Q 020461 222 -TLELIKTYV 230 (326)
Q Consensus 222 -~~~~~~~~~ 230 (326)
...|++.+.
T Consensus 270 ~~~rclhewk 279 (1283)
T KOG1916|consen 270 IVHRCLHEWK 279 (1283)
T ss_pred ccHhhhhccC
Confidence 334555554
No 386
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=3.1 Score=32.34 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=39.3
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
--.+|.-..+|.++-+.+..+.. ++.-..++ .|+..|+.++-..++++-|.++.....++.
T Consensus 107 Tw~egvaf~~d~~t~~~lg~~~y----~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~ 167 (262)
T COG3823 107 TWKEGVAFKYDADTLEELGRFSY----EGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQ 167 (262)
T ss_pred EeccceeEEEChHHhhhhccccc----CCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEE
Confidence 34567777888877666554432 23333444 455667777777789999988877666653
No 387
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.20 E-value=4.1 Score=33.51 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=41.5
Q ss_pred cCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 20 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
..++.|+.|..+| +.+++........... +...|..+...++-+.|+.- .|+.+.++++..-.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~ 67 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLE 67 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEE-cCCccEEEEchhhc
Confidence 4578889998988 8888883332222221 23338888888876655544 35999999987543
No 388
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=0.7 Score=40.82 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=60.1
Q ss_pred EEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEec-----CCCcceeEeecccCceeeeEeecccceee
Q 020461 206 FLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG-----GQDASAVTTTDHRAGKFEAKFFDKILQEE 280 (326)
Q Consensus 206 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 280 (326)
|.++..-..++--|+..|+.+.++..+..++-+.+.|+...-=+.. |-+...+.-+|.|........|..
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q----- 423 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ----- 423 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee-----
Confidence 4456666678889999999999998888888888888765422221 111122333455443322111111
Q ss_pred eccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461 281 IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 281 ~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
.+.+.. ...-.|.+-. ...++|.||.+|.|||++
T Consensus 424 ~kqy~~-k~nFsc~aTT-~sG~IvvgS~~GdIRLYd 457 (644)
T KOG2395|consen 424 SKQYST-KNNFSCFATT-ESGYIVVGSLKGDIRLYD 457 (644)
T ss_pred cccccc-ccccceeeec-CCceEEEeecCCcEEeeh
Confidence 111111 1123444433 456889999999999964
No 389
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.88 E-value=4.6 Score=33.22 Aligned_cols=207 Identities=15% Similarity=0.114 Sum_probs=102.4
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeec--------------cCcccceEEEE--EcCCCCeEEEEeCCC
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY--------------RGHNGAVWCCD--VSRDSMTLITGSADQ 74 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~--------------~~h~~~V~~~~--~~~~~~~l~s~~~d~ 74 (326)
..|..+..-|+-+.|+.-+ |+.+.++++..-.....- ......+...+ -...+...+.....+
T Consensus 36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK 114 (275)
T ss_pred ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence 3478888888877766554 599999998765443311 01122333333 112344444455556
Q ss_pred cEEEEEccCC-----cEEEEEecCCCcceeeeecCCeEEEEEcCccceecee-eeeeeeccCCCCCCCceEEEeccCccc
Q 020461 75 TAKLWNVETG-----AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQGR 148 (326)
Q Consensus 75 ~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (326)
+|.+|..... +....+..+..+..+.+. ++.+++.....+..++.. .....+... .... ...........+
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~-~~~i~v~~~~~f~~idl~~~~~~~l~~~-~~~~-~~~~~~~~~~~~ 191 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL-GNKICVGTSKGFYLIDLNTGSPSELLDP-SDSS-SSFKSRNSSSKP 191 (275)
T ss_pred EEEEEEEECCcccccceeEEEEcCCCcEEEEEe-CCEEEEEeCCceEEEecCCCCceEEeCc-cCCc-chhhhcccCCCc
Confidence 8999987653 344556666677777776 555555544444333221 011111100 0000 000000111122
Q ss_pred eeEEEEecCCcEEEEeeCCCcEEEEECCCCcccc--ccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE
Q 020461 149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK--ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (326)
Q Consensus 149 i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 226 (326)
+...... ++.+|++ .++- -...|. .|+..+ .+.. +..+.++++. ..+|++.+. +.|.+|++.+++++
T Consensus 192 ~~~~~~~-~~e~Ll~-~~~~-g~fv~~-~G~~~r~~~i~W----~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 192 LGIFQLS-DNEFLLC-YDNI-GVFVNK-NGEPSRKSTIQW----SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELV 260 (275)
T ss_pred eEEEEeC-CceEEEE-ecce-EEEEcC-CCCcCcccEEEc----CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEE
Confidence 2222222 2444543 3222 223333 343332 1211 2345566653 357777666 45999999999998
Q ss_pred EEEeec
Q 020461 227 KTYVTE 232 (326)
Q Consensus 227 ~~~~~~ 232 (326)
+.+..+
T Consensus 261 Q~i~~~ 266 (275)
T PF00780_consen 261 QTIPLP 266 (275)
T ss_pred EEEECC
Confidence 887643
No 390
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.80 E-value=0.79 Score=42.15 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=44.2
Q ss_pred CCcEEEEeeCCCcEEEEECCC----Cccccccc-----------ccc--------CcceeeEEEEEcC----CCCeEEEE
Q 020461 157 LNRTIISAGEDAIVRIWDTET----GKLLKESD-----------KET--------GHKKTITSLAKAA----DGSHFLTG 209 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~----~~~~~~~~-----------~~~--------~h~~~v~~v~~s~----~~~~l~s~ 209 (326)
+...++.+..||.+...+... +....... ... .-.....+++++. +..++++-
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 455677778888888777653 11111100 000 0123345555555 67789999
Q ss_pred eCCCeEEEeecCCcceEEEEe
Q 020461 210 SLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 210 s~dg~i~iwd~~~~~~~~~~~ 230 (326)
+.|+++|+||+++++++.+..
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEec
Confidence 999999999999999977653
No 391
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.77 E-value=2.9 Score=37.17 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=56.1
Q ss_pred eeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeee
Q 020461 192 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 270 (326)
Q Consensus 192 ~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 270 (326)
-.|..+..++.|+.++-.+.+|.+.++=.+....-..+..+. .++|-.+.- + .
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i-~-------------------------~ 157 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPV-A-------------------------E 157 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecc-c-------------------------c
Confidence 456777889999999999999987766433322222222221 122222211 1 1
Q ss_pred EeecccceeeeccccccCcceeEEEECCCC---ceEEeecCCCcEEEeecCCCce
Q 020461 271 KFFDKILQEEIGGVKGHFGPINALAFNPDG---KSFSSGGEDGYVRLHHFDPDYF 322 (326)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~---~~lat~s~Dg~i~l~~~~~~~~ 322 (326)
++|.... .=++..++|+|++ ..|..=+.|..||+|++....+
T Consensus 158 ~~ftss~----------~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 158 RFFTSST----------SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred eeeccCC----------ceeeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 1222111 1146789999987 4677778899999998866543
No 392
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.62 E-value=1.1 Score=35.56 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=49.0
Q ss_pred EecCCcEEEEeeCCCcEEEEECCCCcccccc---cc-cc-------CcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKES---DK-ET-------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 154 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~-~~-------~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (326)
+...+.+++.-..+|.+++||+.+++.+..- .+ .. .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3445778999999999999999988765432 11 11 3456788888898888777665 57789998653
No 393
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.54 E-value=0.61 Score=25.91 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=24.7
Q ss_pred ceeEEEEecCCc---EEEEeeCCCcEEEEECCC
Q 020461 148 RINRAVWGPLNR---TIISAGEDAIVRIWDTET 177 (326)
Q Consensus 148 ~i~~~~~~~~~~---~l~s~~~d~~i~~wd~~~ 177 (326)
.+.++.|+|... +|+.+-.-+.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 577899998654 788888889999999985
No 394
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.47 E-value=4.2 Score=32.27 Aligned_cols=101 Identities=13% Similarity=0.153 Sum_probs=65.6
Q ss_pred eEEEEecCCcEE-EEeeCCCcEEEEE--CCCCccc-----cccccccCcc-eeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461 150 NRAVWGPLNRTI-ISAGEDAIVRIWD--TETGKLL-----KESDKETGHK-KTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 150 ~~~~~~~~~~~l-~s~~~d~~i~~wd--~~~~~~~-----~~~~~~~~h~-~~v~~v~~s~~~~~l~s~s~dg~i~iwd~ 220 (326)
+.++|+.+.+.+ ++-+.+-+|.-|| ..+|... ..+....... ...-.++++.+|...++.-+.++|...|+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 457788776655 4667788888888 4454332 1121111111 11234455778888888888999999999
Q ss_pred CCcceEEEEeec-cceEEEEeC-CCCCeeEEe
Q 020461 221 RTLELIKTYVTE-RPVNAVTMS-PLLDHVVLG 250 (326)
Q Consensus 221 ~~~~~~~~~~~~-~~~~~~~~s-~~~~~~~~~ 250 (326)
.+++.+.++..+ ..+.++||- ++.+.++++
T Consensus 241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 999999998654 568888875 444555443
No 395
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.38 E-value=8.3 Score=34.96 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.8
Q ss_pred CCCeEEEEeCCCeEEEeecCCcceEEEEeecc
Q 020461 202 DGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (326)
Q Consensus 202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 233 (326)
.+..++.++.||.|+-+|.++++.+-++....
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~ 436 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRTPS 436 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEECCC
Confidence 34678889999999999999999988876543
No 396
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.36 E-value=4.2 Score=38.54 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=26.4
Q ss_pred CcceeEEEECCC---CceEEeecCCCcEEEeecCC
Q 020461 288 FGPINALAFNPD---GKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 288 ~~~v~~v~~s~d---~~~lat~s~Dg~i~l~~~~~ 319 (326)
...|..+.|+|. +.+|+.=..|+++|+|++..
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 457899999986 47888888899999998854
No 397
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.33 E-value=5.8 Score=36.78 Aligned_cols=115 Identities=14% Similarity=0.290 Sum_probs=58.7
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec--CCCcceeeeec---CCeEEEEEcCccceeceeeeeeeeccCCC
Q 020461 58 CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF--DSPARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPA 132 (326)
Q Consensus 58 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (326)
+.-+.-++..+.-+....+.+||.+.+..-+...+ ..++..++|.. ++.+.+++-.....+....+.......+.
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 33344444444444445689999998876655555 56777777763 34455554433332222211110111010
Q ss_pred CCCCceEEEeccC-ccceeEEEEecCCcEEEEeeCCCcEEEEEC
Q 020461 133 DQGGESVLILKGP-QGRINRAVWGPLNRTIISAGEDAIVRIWDT 175 (326)
Q Consensus 133 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~ 175 (326)
-.....+. +..+ ..+|.+..|-++|..++.+| +.+.|+|-
T Consensus 115 w~~i~~i~-i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 115 WAPIRKID-ISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cceeEEEE-eecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 00111111 2233 36788999999887665443 45777774
No 398
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.19 E-value=5.8 Score=32.68 Aligned_cols=198 Identities=14% Similarity=0.158 Sum_probs=108.7
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCc-ccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 86 (326)
|-+..+.++.|+|+.+.|++..+...-.+|=..+|+.+.++.-. -..-..+++..++++.++-=.++.+-++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 33455899999999999999988888888877888888776421 11224466666676666655677766665544322
Q ss_pred EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (326)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 166 (326)
+.... .. .+.+.. ....+..---++|+|..+.|..+-+
T Consensus 163 ~~~~~-------------~~--------------~i~L~~---------------~~k~N~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 163 VISAK-------------VQ--------------KIPLGT---------------TNKKNKGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred EEecc-------------ce--------------EEeccc---------------cCCCCcCceeeecCCCCceEEEEEc
Confidence 21110 00 000000 0000222334678888888888877
Q ss_pred CCcEEEEECCCCccccccccccCcc-------eeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEee-------
Q 020461 167 DAIVRIWDTETGKLLKESDKETGHK-------KTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVT------- 231 (326)
Q Consensus 167 d~~i~~wd~~~~~~~~~~~~~~~h~-------~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------- 231 (326)
-.=++|+..+.....-.......+. ..+.++.+.+. +..|+-+-+++.+.--|.. ++.+..+..
T Consensus 201 r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL 279 (316)
T COG3204 201 RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGL 279 (316)
T ss_pred cCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCC
Confidence 7777777665333111111111111 23555666653 5556666667766666654 333333221
Q ss_pred ---ccceEEEEeCCCCCeeE
Q 020461 232 ---ERPVNAVTMSPLLDHVV 248 (326)
Q Consensus 232 ---~~~~~~~~~s~~~~~~~ 248 (326)
.....++++.+++...+
T Consensus 280 ~~dipqaEGiamDd~g~lYI 299 (316)
T COG3204 280 SSDIPQAEGIAMDDDGNLYI 299 (316)
T ss_pred cccCCCcceeEECCCCCEEE
Confidence 12345666666654433
No 399
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.79 E-value=0.99 Score=41.50 Aligned_cols=72 Identities=25% Similarity=0.280 Sum_probs=43.7
Q ss_pred cCCCEEEeecCCCCeEEEecCC----CCeeee-c----------cC-----------cccceEEEEEcC----CCCeEEE
Q 020461 20 KDGDLLFSCAKDHTPTVWFADN----GERLGT-Y----------RG-----------HNGAVWCCDVSR----DSMTLIT 69 (326)
Q Consensus 20 ~~~~~l~s~~~d~~v~iw~~~~----~~~~~~-~----------~~-----------h~~~V~~~~~~~----~~~~l~s 69 (326)
++...++.+..||.+....... +..... . .+ -...+..++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666777778888888776553 221111 1 00 123345556655 6679999
Q ss_pred EeCCCcEEEEEccCCcEEEEEe
Q 020461 70 GSADQTAKLWNVETGAQLFTFN 91 (326)
Q Consensus 70 ~~~d~~i~~wd~~~~~~~~~~~ 91 (326)
-+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999866553
No 400
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.77 E-value=7.1 Score=32.85 Aligned_cols=144 Identities=15% Similarity=0.075 Sum_probs=73.0
Q ss_pred cceeEEEEecCCcEEEEeeC-----------CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CCe
Q 020461 147 GRINRAVWGPLNRTIISAGE-----------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKS 214 (326)
Q Consensus 147 ~~i~~~~~~~~~~~l~s~~~-----------d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~ 214 (326)
...+.....|+|.+.++-.. -|.|...|. .+...+.+ ..+-..-+.++||||++.|..+.. .+.
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~---~~~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL---DDDLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee---cCcEEecCceEECCCCCEEEEEeCCCCe
Confidence 45667788888876654333 122434443 33333322 233455678999999987776655 477
Q ss_pred EEEeecCC--cceEE---EEe---eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccc
Q 020461 215 AKLWDART--LELIK---TYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG 286 (326)
Q Consensus 215 i~iwd~~~--~~~~~---~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 286 (326)
|.-+++.. +..-. .+. .......++...++..-+ ++..++..+ ..|+.. ++++..+.-
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~-~a~~~g~~v------------~~~~pd-G~l~~~i~l 252 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV-AAVWGGGRV------------VRFNPD-GKLLGEIKL 252 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE-ecccCCceE------------EEECCC-CcEEEEEEC
Confidence 77776642 11111 011 123445556655554432 222222122 222322 333333444
Q ss_pred cCcceeEEEE-CCCCceEEeecC
Q 020461 287 HFGPINALAF-NPDGKSFSSGGE 308 (326)
Q Consensus 287 h~~~v~~v~~-s~d~~~lat~s~ 308 (326)
....+.+++| .|+.+.|...+.
T Consensus 253 P~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 253 PVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCCccceEeCCCcCEEEEEec
Confidence 4467888888 466665544433
No 401
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.66 E-value=5.3 Score=35.07 Aligned_cols=90 Identities=10% Similarity=0.076 Sum_probs=57.3
Q ss_pred eccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCccee-eEEEE-------------EcCCCC--e
Q 020461 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT-ITSLA-------------KAADGS--H 205 (326)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~-v~~v~-------------~s~~~~--~ 205 (326)
+......+.++..+|.+++.++..+=|+|.++|+.++..++....-..-+-. +.... ..+... +
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3444556788999999999999888899999999987766543321110000 00000 000011 2
Q ss_pred EEEEeCCCeEEEeecCCcceEEEEee
Q 020461 206 FLTGSLDKSAKLWDARTLELIKTYVT 231 (326)
Q Consensus 206 l~s~s~dg~i~iwd~~~~~~~~~~~~ 231 (326)
++-+-.-|.|-+|.++++..+..+..
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEe
Confidence 44566789999999999988777654
No 402
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.46 E-value=14 Score=35.56 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=45.7
Q ss_pred CCEEEeecCCCCeEEEecCCCCeeeeccCcccceE-------------EEEEcC--CCCeEEEEeC----------CCcE
Q 020461 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-------------CCDVSR--DSMTLITGSA----------DQTA 76 (326)
Q Consensus 22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~-------------~~~~~~--~~~~l~s~~~----------d~~i 76 (326)
+.+++.++.|+.+.=.|.++|+.+-.|.. .+.|. .+.-.| .+..++.++. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 34777788899988889999988765532 22220 111112 1335555543 6889
Q ss_pred EEEEccCCcEEEEEec
Q 020461 77 KLWNVETGAQLFTFNF 92 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~ 92 (326)
+-+|.++|+.+..+..
T Consensus 339 ~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 339 RAFDVNTGALVWAWDP 354 (764)
T ss_pred EEEECCCCcEeeEEec
Confidence 9999999999887754
No 403
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.36 E-value=2.6 Score=33.47 Aligned_cols=64 Identities=13% Similarity=0.276 Sum_probs=43.4
Q ss_pred EccCCCEEEeecCCCCeEEEecCCCCeeeec-------c-------CcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 18 YNKDGDLLFSCAKDHTPTVWFADNGERLGTY-------R-------GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 18 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-------~-------~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
+..++++|++-..+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|....|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4567889999999999999999988764321 1 2344566677776666555443 3555666643
No 404
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.32 E-value=0.45 Score=44.77 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=45.4
Q ss_pred eEEEEcc---CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEE-----------EcCCCCeEEEEeCCCcEEEE
Q 020461 14 TYLKYNK---DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD-----------VSRDSMTLITGSADQTAKLW 79 (326)
Q Consensus 14 ~~~~~s~---~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~-----------~~~~~~~l~s~~~d~~i~~w 79 (326)
.-+.|.| +.-++-.+-.++++++-+..+... ..+++|...+..++ .+|||..|++++.||.++.|
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 3444443 444555566778888876554433 55677876655443 58899999999999999988
Q ss_pred Ec
Q 020461 80 NV 81 (326)
Q Consensus 80 d~ 81 (326)
.+
T Consensus 263 Qi 264 (1283)
T KOG1916|consen 263 QI 264 (1283)
T ss_pred ee
Confidence 75
No 405
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.26 E-value=11 Score=32.59 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=51.2
Q ss_pred eeEEEEecCCcEEEEee-----------CCC-cEEEEECCC--CccccccccccCcceeeEEEEEcCCCCeEEEEeCCCe
Q 020461 149 INRAVWGPLNRTIISAG-----------EDA-IVRIWDTET--GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214 (326)
Q Consensus 149 i~~~~~~~~~~~l~s~~-----------~d~-~i~~wd~~~--~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~ 214 (326)
...++|.++|+++++-. ..+ .|.+++-.+ ++..+. ..........+.+++.+++ .++ ++....
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~-~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS-NVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee-EEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 44577888888766642 223 677776542 332111 1111112345788888888 444 444443
Q ss_pred EEEeecCC-------cceEEE-Eee-----ccceEEEEeCCCCCeeEEec
Q 020461 215 AKLWDART-------LELIKT-YVT-----ERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 215 i~iwd~~~-------~~~~~~-~~~-----~~~~~~~~~s~~~~~~~~~~ 251 (326)
.++.|... .+.+.+ +.. ....+.+.+.|++...+..+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 34445431 112212 221 13367889999886544444
No 406
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.25 E-value=17 Score=34.39 Aligned_cols=109 Identities=10% Similarity=0.076 Sum_probs=61.1
Q ss_pred EEcCCCCeEEEEeCCCeEEEeecCCc--------------------ceEEEEeeccceEEEEeC--CCCCeeEEecCCCc
Q 020461 198 AKAADGSHFLTGSLDKSAKLWDARTL--------------------ELIKTYVTERPVNAVTMS--PLLDHVVLGGGQDA 255 (326)
Q Consensus 198 ~~s~~~~~l~s~s~dg~i~iwd~~~~--------------------~~~~~~~~~~~~~~~~~s--~~~~~~~~~~~~~~ 255 (326)
..-.+...|+.+..||.|.+|.+++- ++...+..+....+++++ .....++++.....
T Consensus 109 ~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~ 188 (717)
T PF08728_consen 109 GDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQE 188 (717)
T ss_pred cccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCce
Confidence 33456667999999999999965321 011222234456777777 44444444433333
Q ss_pred ceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC---c---eEEeecCCCcEEEeec
Q 020461 256 SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG---K---SFSSGGEDGYVRLHHF 317 (326)
Q Consensus 256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~---~---~lat~s~Dg~i~l~~~ 317 (326)
..+..+..... +.... .-..|...|-+|+|-++. . .+++++-.|.+.+|++
T Consensus 189 VTVFaf~l~~~----r~~~~-------~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 189 VTVFAFALVDE----RFYHV-------PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEEecccc----ccccc-------cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 33322221100 00000 011255578999996643 2 7888999999999887
No 407
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=90.00 E-value=9.2 Score=31.06 Aligned_cols=204 Identities=14% Similarity=0.161 Sum_probs=92.6
Q ss_pred eccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461 47 TYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125 (326)
Q Consensus 47 ~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
.+.+-...+..++|.|+.+ ++++....+.|--.+. +|+.+..+.+...
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~------------------------------ 64 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF------------------------------ 64 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-------------------------------
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC------------------------------
Confidence 3455555699999999866 4555556676655564 3555544433210
Q ss_pred eeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcc-c-----cccc--cccCcceeeEEE
Q 020461 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL-L-----KESD--KETGHKKTITSL 197 (326)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~-----~~~~--~~~~h~~~v~~v 197 (326)
+-.-.+++-.++.++++--.++.+.++++..... + ..+. ....+...+-.+
T Consensus 65 ---------------------~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGl 123 (248)
T PF06977_consen 65 ---------------------GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGL 123 (248)
T ss_dssp ---------------------SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEE
T ss_pred ---------------------CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEE
Confidence 0011122333344445444466676666632111 0 1111 111244557899
Q ss_pred EEcCCCCeEEEEeCCCeEEEeecCC---cceEEEEe---------eccceEEEEeCCCCCeeEEecCCCcceeEeecccC
Q 020461 198 AKAADGSHFLTGSLDKSAKLWDART---LELIKTYV---------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA 265 (326)
Q Consensus 198 ~~s~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~---------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~ 265 (326)
+|++.+..|+.+-...-.+++.++. ...+.... ....+.+++++|..+++++-+......+ ..| +.
T Consensus 124 a~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~-~~d-~~ 201 (248)
T PF06977_consen 124 AYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLL-ELD-RQ 201 (248)
T ss_dssp EEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEE-EE--TT
T ss_pred EEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEE-EEC-CC
Confidence 9999988888888877777776654 22211111 1235788999998888776655444333 333 22
Q ss_pred ceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeec
Q 020461 266 GKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 307 (326)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s 307 (326)
+.. +..+....+ .+++...-..-..|+|.++|.+.+++=
T Consensus 202 G~~-~~~~~L~~g--~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 202 GRV-VSSLSLDRG--FHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp --E-EEEEE-STT--GGG-SS---SEEEEEE-TT--EEEEET
T ss_pred CCE-EEEEEeCCc--ccCcccccCCccEEEECCCCCEEEEcC
Confidence 221 111111110 011111223457799999997766543
No 408
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.66 E-value=10 Score=30.99 Aligned_cols=151 Identities=11% Similarity=0.052 Sum_probs=80.6
Q ss_pred ceeEEEEecCCcEEEEee---CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEee-cCCc
Q 020461 148 RINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD-ARTL 223 (326)
Q Consensus 148 ~i~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd-~~~~ 223 (326)
.+.+.++++++..++... ....+.++... ....... . ...++.-.|++++...+....+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~--~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL--T--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec--c--CCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 467788999998766544 33345555433 2222221 1 23567778999987766666666666663 3333
Q ss_pred ceEEE-Eee--cc-ceEEEEeCCCCCeeEEecC---CCcceeEee-cccCceeeeEeecccceeeeccccccCcceeEEE
Q 020461 224 ELIKT-YVT--ER-PVNAVTMSPLLDHVVLGGG---QDASAVTTT-DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 295 (326)
Q Consensus 224 ~~~~~-~~~--~~-~~~~~~~s~~~~~~~~~~~---~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 295 (326)
+.... ... .. .|..+.+||++..+++... .....+... ....+ .... ..............+.+++
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g-~~~~-----l~~~~~~~~~~~~~v~~v~ 172 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG-VPRR-----LTGPRRVAPPLLSDVTDVA 172 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC-Ccce-----eccceEecccccCcceeee
Confidence 32221 111 12 7899999999999876541 122222211 00111 0000 0111111222345789999
Q ss_pred ECCCCceEEeecCCC
Q 020461 296 FNPDGKSFSSGGEDG 310 (326)
Q Consensus 296 ~s~d~~~lat~s~Dg 310 (326)
|.+++.+++.+...+
T Consensus 173 W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 173 WSDDSTLVVLGRSAG 187 (253)
T ss_pred ecCCCEEEEEeCCCC
Confidence 999998866555433
No 409
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.33 E-value=2 Score=37.45 Aligned_cols=172 Identities=15% Similarity=0.215 Sum_probs=83.7
Q ss_pred EEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccc-c-ccccC-cceeeE-EEEEcCCCCeEEEEeCCCeE
Q 020461 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE-S-DKETG-HKKTIT-SLAKAADGSHFLTGSLDKSA 215 (326)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~-~~~~~-h~~~v~-~v~~s~~~~~l~s~s~dg~i 215 (326)
..+....+.+..+-..|+++.++.-+. ..+.++++.+...... + ....+ -...|+ ++..-..|..++.+..||.|
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v 292 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV 292 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence 334455566778889999997765544 6788888865543221 1 10011 012233 22234566778999999998
Q ss_pred EEe-ecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEE
Q 020461 216 KLW-DARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 294 (326)
Q Consensus 216 ~iw-d~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 294 (326)
.-| |.+.... ..+. .++...+.|.....+..-....... ..+ +.+... .++.......+ ...-...+.-+
T Consensus 293 sQWFdvr~~~~-p~l~---h~R~f~l~pa~~~~l~pe~~rkgF~-~l~-~~G~L~-~f~st~~~~lL--~~~~~~~~~~~ 363 (733)
T COG4590 293 SQWFDVRRDGQ-PHLN---HIRNFKLAPAEVQFLLPETNRKGFY-SLY-RNGTLQ-SFYSTSEKLLL--FERAYQAPQLV 363 (733)
T ss_pred eeeeeeecCCC-Ccce---eeeccccCcccceeeccccccceEE-EEc-CCCcee-eeecccCccee--hhhhhcCccee
Confidence 777 5543222 1111 1222223322222221111111111 111 111111 11111111111 01111245669
Q ss_pred EECCCCceEEeecCCCcEEEeecCCCce
Q 020461 295 AFNPDGKSFSSGGEDGYVRLHHFDPDYF 322 (326)
Q Consensus 295 ~~s~d~~~lat~s~Dg~i~l~~~~~~~~ 322 (326)
++||.+.+|++- ..|.|+++++++-+=
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCCC
Confidence 999999999854 368899999887653
No 410
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=89.21 E-value=4.8 Score=26.70 Aligned_cols=44 Identities=23% Similarity=0.131 Sum_probs=30.2
Q ss_pred EEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEe
Q 020461 207 LTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 207 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 250 (326)
+.+..+|.+.-||+.+++..--...-.-.++++++++++.++++
T Consensus 31 le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 31 LEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred ecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 33445688999999998764444444578999999999988775
No 411
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.11 E-value=4 Score=35.74 Aligned_cols=150 Identities=12% Similarity=0.179 Sum_probs=81.1
Q ss_pred EEEEccCCCEEEeecCCCCeEEEecCC--CC-eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe
Q 020461 15 YLKYNKDGDLLFSCAKDHTPTVWFADN--GE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~--~~-~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 91 (326)
.+=|+-..+.|++. ..|-+.=|..+. .. .+.......++|.++.||+|.+.++.--.|.+|.+++....+......
T Consensus 27 gvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 34444434444332 223444454432 22 333334567899999999999999999999999999985443322221
Q ss_pred cC-----CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe-e
Q 020461 92 FD-----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-G 165 (326)
Q Consensus 92 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 165 (326)
.. ..+.++.|.....++.+... .+.+..... ....++..+.|.-.|++..|.++.+.++-+ +
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e~A~i~~~-------G~e~y~v~p-----ekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTEIAFITDQ-------GIEFYQVLP-----EKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HHhccCcceeEEEEEecCeeEEEEecC-------CeEEEEEch-----hhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 11 12344455554444443322 122211111 112344456778889999999987754432 2
Q ss_pred -CCCcEEEEECCC
Q 020461 166 -EDAIVRIWDTET 177 (326)
Q Consensus 166 -~d~~i~~wd~~~ 177 (326)
..+++.-+-+++
T Consensus 174 ~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 174 VLENVLNPFHFRA 186 (657)
T ss_pred ccccccccEEEee
Confidence 444444444443
No 412
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.68 E-value=12 Score=30.43 Aligned_cols=108 Identities=12% Similarity=0.053 Sum_probs=56.2
Q ss_pred CCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec
Q 020461 64 SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 143 (326)
Q Consensus 64 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (326)
..+++.||..+.++--|.++|...........+-+.....++.+++.+-.. ...+... .+|..+..+.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g------~lYfl~~------~tGs~~w~f~ 90 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSG------GLYFLCV------KTGSQIWNFV 90 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccC------cEEEEEe------cchhheeeee
Confidence 346677777777777788777765543333222222233444443332211 1111111 0111111111
Q ss_pred cCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccc
Q 020461 144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183 (326)
Q Consensus 144 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 183 (326)
....--.+....++++.+..|+.|+.....|.++..++..
T Consensus 91 ~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 91 ILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred ehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 1111111244577889999999999999999988766543
No 413
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.32 E-value=4.5 Score=30.75 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=25.4
Q ss_pred cceeEEEECCCC------ceEEeecCCCcEEEeecCC
Q 020461 289 GPINALAFNPDG------KSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 289 ~~v~~v~~s~d~------~~lat~s~Dg~i~l~~~~~ 319 (326)
+.|.+++|||-| .+||+-+.+|.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999943 4699999999999987653
No 414
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.26 E-value=11 Score=29.55 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=44.1
Q ss_pred CCCEEEeecC--CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCcEEEEEccCCcEEEEEecCCCcc
Q 020461 21 DGDLLFSCAK--DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFDSPAR 97 (326)
Q Consensus 21 ~~~~l~s~~~--d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 97 (326)
+|.++.+.+. ...|++|++.+|+.+..-+--...+..=-...-+..+. -.-.||....+|..+-+++-.+.+++...
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 4677777774 56788999998876543322112222111111122222 23356777788888877776666655444
Q ss_pred ee
Q 020461 98 SV 99 (326)
Q Consensus 98 ~~ 99 (326)
.+
T Consensus 135 gL 136 (262)
T COG3823 135 GL 136 (262)
T ss_pred ee
Confidence 43
No 415
>PHA02713 hypothetical protein; Provisional
Probab=88.17 E-value=22 Score=32.96 Aligned_cols=51 Identities=18% Similarity=0.142 Sum_probs=26.0
Q ss_pred CeEEEecCCCCeee--eccCcccceEEEEEcCCCCeEEEEeCC------CcEEEEEccCCc
Q 020461 33 TPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSAD------QTAKLWNVETGA 85 (326)
Q Consensus 33 ~v~iw~~~~~~~~~--~~~~h~~~V~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~ 85 (326)
.+..||..+++... .+...... .+++. .++...+.||.+ ..+..||+.+++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~ 331 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKI 331 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCe
Confidence 46677877765432 22211111 12222 356667777754 346677877653
No 416
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.84 E-value=14 Score=36.40 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=62.8
Q ss_pred eEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE
Q 020461 150 NRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228 (326)
Q Consensus 150 ~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 228 (326)
.++.|+|.-. ..+....|+.|++..++...... .. ..-....++++|+|.|+.++.|-..|++.-|... .+....
T Consensus 159 ~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v--~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ 234 (1405)
T KOG3630|consen 159 LKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNV--TS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSE 234 (1405)
T ss_pred ccccccCCccchhhhhccccchhhhhhhhhhhhh--cc-cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeec
Confidence 3455666543 45677889999888765322211 11 1234678999999999999999999999988764 233233
Q ss_pred Eee-----ccceEEEEeCCCCCeeEEe
Q 020461 229 YVT-----ERPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 229 ~~~-----~~~~~~~~~s~~~~~~~~~ 250 (326)
+.. ...+.+++|-.....+++-
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEEe
Confidence 221 2457788887666665543
No 417
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.80 E-value=5.2 Score=37.98 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=50.6
Q ss_pred ceeEEEEccCCCEEEeecCCCCeEEEecC----------CCCee---eec--------cCcccceEEEEEcCC---CCeE
Q 020461 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFAD----------NGERL---GTY--------RGHNGAVWCCDVSRD---SMTL 67 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~----------~~~~~---~~~--------~~h~~~V~~~~~~~~---~~~l 67 (326)
.|..+.++|+|.+|+-.|..+...+ .+. .|... +++ ..+...|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4788999999999998888655444 332 11111 111 134457889999996 4688
Q ss_pred EEEeCCCcEEEEEccCC
Q 020461 68 ITGSADQTAKLWNVETG 84 (326)
Q Consensus 68 ~s~~~d~~i~~wd~~~~ 84 (326)
+.=..|+++|+||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 88899999999999653
No 418
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=87.54 E-value=24 Score=32.77 Aligned_cols=144 Identities=17% Similarity=0.195 Sum_probs=69.8
Q ss_pred CCcEEEEeeCCC-----cEEEEECCCCccccccccccCcceeeEE-EEEcCCCCeEEEEeCCC------eEEEeecCCcc
Q 020461 157 LNRTIISAGEDA-----IVRIWDTETGKLLKESDKETGHKKTITS-LAKAADGSHFLTGSLDK------SAKLWDARTLE 224 (326)
Q Consensus 157 ~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~h~~~v~~-v~~s~~~~~l~s~s~dg------~i~iwd~~~~~ 224 (326)
.|...+.||.|| ++..||..+.+... +.... ..... -...-+|...+.|+.|+ ++..||..+..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~-va~m~---~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP-VAPML---TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccc-cCCCC---cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 456778899887 48888887654422 11111 11111 12234567777887654 46778877654
Q ss_pred eEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce--eeeccccccCcceeEEEECCCCce
Q 020461 225 LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ--EEIGGVKGHFGPINALAFNPDGKS 302 (326)
Q Consensus 225 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~v~~s~d~~~ 302 (326)
-...-.....-.........+.+++.||.++... ...++.|+..+. ..+..+......+..++. +++.
T Consensus 456 W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~--------~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~l 525 (571)
T KOG4441|consen 456 WTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSA--------LSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKL 525 (571)
T ss_pred eeecCCcccccccceEEEECCEEEEECCccCCCc--------cceEEEEcCCCCceeEcccCccccccccEEEE--CCEE
Confidence 3222111222222223333455666666554110 001233332221 112223333333434444 4788
Q ss_pred EEeecCCCcEEE
Q 020461 303 FSSGGEDGYVRL 314 (326)
Q Consensus 303 lat~s~Dg~i~l 314 (326)
.+.|+.||.-++
T Consensus 526 y~vGG~~~~~~l 537 (571)
T KOG4441|consen 526 YAVGGFDGNNNL 537 (571)
T ss_pred EEEecccCcccc
Confidence 889998875544
No 419
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.16 E-value=9.6 Score=34.05 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=43.7
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~ 221 (326)
..+++.||..|.|++||.-.. ..++. ..+-...|..+..+.+|..+++.+. .++.+-|++
T Consensus 573 sGyIa~as~kGDirLyDRig~-rAKta--lP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGK-RAKTA--LPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcc-hhhhc--CcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 468999999999999996422 22222 2345678999999999998888775 467777754
No 420
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.63 E-value=2.3 Score=22.85 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=18.4
Q ss_pred cceeEEEECCCCceEEeecC-C--CcEEEe
Q 020461 289 GPINALAFNPDGKSFSSGGE-D--GYVRLH 315 (326)
Q Consensus 289 ~~v~~v~~s~d~~~lat~s~-D--g~i~l~ 315 (326)
+.-...+|||||+.|+-++. + |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 45678999999998766654 4 566665
No 421
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.17 E-value=27 Score=32.05 Aligned_cols=69 Identities=25% Similarity=0.273 Sum_probs=41.0
Q ss_pred EEEEeeCCCcEEEEECCCCccccccccccCcc--eeeEEEEEcCCCCeEEEEe------CCCeEEEeecCCcceEEEEe
Q 020461 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSHFLTGS------LDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~ 230 (326)
.++.++.|+.+.-.|.++|+.+-..... .+. ..+++--.-.++ .++.++ .+|.|.-+|.++++.+-++.
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccc-cccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 4666778888999999888876443211 111 111111000133 455543 26889999999998877654
No 422
>PHA03098 kelch-like protein; Provisional
Probab=85.92 E-value=28 Score=31.96 Aligned_cols=64 Identities=6% Similarity=-0.002 Sum_probs=33.2
Q ss_pred cCCCEEEeecCCC------CeEEEecCCCCeeee--ccCcccceEEEEEcCCCCeEEEEeCC-----CcEEEEEccCCc
Q 020461 20 KDGDLLFSCAKDH------TPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETGA 85 (326)
Q Consensus 20 ~~~~~l~s~~~d~------~v~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~ 85 (326)
.++.+++.||.++ .+..||..+.+.... +.........+. -+++..+.||.+ ..+..||+.+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4456666666543 466778777665321 111111111222 256667777765 346677876653
No 423
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.96 E-value=21 Score=29.60 Aligned_cols=106 Identities=10% Similarity=0.197 Sum_probs=72.1
Q ss_pred cCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc
Q 020461 144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (326)
Q Consensus 144 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~ 223 (326)
|-...+..+.|+|+.+.|++..+...-.+|=...|+.++.+... + -...-.+.+..++.+.++-=.++.+.++.+...
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-G-FSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-c-cCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 33455888999999999988888887777766778887765432 2 123456778888888777777888888876554
Q ss_pred ceEEEE-----ee------ccceEEEEeCCCCCeeEEec
Q 020461 224 ELIKTY-----VT------ERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 224 ~~~~~~-----~~------~~~~~~~~~s~~~~~~~~~~ 251 (326)
..+... .. ..-..++++.|....++++-
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK 199 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK 199 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE
Confidence 222221 11 22356788888887777653
No 424
>PRK13684 Ycf48-like protein; Provisional
Probab=84.87 E-value=24 Score=30.20 Aligned_cols=158 Identities=8% Similarity=0.046 Sum_probs=0.0
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 89 (326)
...+..+.+.|++.+++.+..-...+.++-........-..-...+.++.+.++++.++.+.. |.+++=..+.++....
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~-G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARG-GQIRFNDPDDLESWSK 250 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecC-CEEEEccCCCCCcccc
Q ss_pred EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCc
Q 020461 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~ 169 (326)
...+...... .+..+.+.|++. ++.++.+|.
T Consensus 251 ~~~~~~~~~~------------------------------------------------~l~~v~~~~~~~-~~~~G~~G~ 281 (334)
T PRK13684 251 PIIPEITNGY------------------------------------------------GYLDLAYRTPGE-IWAGGGNGT 281 (334)
T ss_pred ccCCcccccc------------------------------------------------ceeeEEEcCCCC-EEEEcCCCe
Q ss_pred EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEee
Q 020461 170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (326)
Q Consensus 170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd 219 (326)
|. .....++..........-......+.+..++..+++|.. |.|.-|+
T Consensus 282 v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-G~il~~~ 329 (334)
T PRK13684 282 LL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR-GVLLRYV 329 (334)
T ss_pred EE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCC-ceEEEec
No 425
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.36 E-value=29 Score=31.35 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=26.4
Q ss_pred ceeEEEEecCC---cEEEEeeCCCcEEEEECCCCcccc
Q 020461 148 RINRAVWGPLN---RTIISAGEDAIVRIWDTETGKLLK 182 (326)
Q Consensus 148 ~i~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~ 182 (326)
.+..++|+|+. ..+..-.+|.+||+||...-+.+.
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence 35567888875 577888899999999987654443
No 426
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=84.07 E-value=34 Score=31.41 Aligned_cols=62 Identities=26% Similarity=0.338 Sum_probs=40.0
Q ss_pred CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc
Q 020461 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (326)
Q Consensus 168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 233 (326)
+.|.-+|+.+++..-........ .-+. ..-.+..++.++.||.++.+|.++++.+-++....
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~---~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPL---WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCC---CCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 56888888888765433211110 1111 11244567778889999999999999998876543
No 427
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=83.93 E-value=35 Score=31.33 Aligned_cols=150 Identities=15% Similarity=0.264 Sum_probs=77.6
Q ss_pred CceeEEEEccCCCEE-Eeec--CCCCeEEEecCCCCeeeeccCcccceEEEEEcCC----CCeEEEEeCCCcEEEEEcc-
Q 020461 11 RPLTYLKYNKDGDLL-FSCA--KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD----SMTLITGSADQTAKLWNVE- 82 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l-~s~~--~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~l~s~~~d~~i~~wd~~- 82 (326)
.++..++|. ||+.+ ++.- .+|.++.= +...+ |.=..|..++|.|- ..-|++....+.|-+|-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfG---ds~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFG---DSKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccC---CccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 356777886 56544 3321 12222211 11222 33345788999874 3356666777899999874
Q ss_pred ----CCcEEEEE--e----cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEE
Q 020461 83 ----TGAQLFTF--N----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (326)
Q Consensus 83 ----~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (326)
+++.+... . ++--..++-|+|...+.++-+..-..+....+. .+..+..--...+.|.|.
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~----------d~srVkaDi~~~G~IhCA 161 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHC----------DSSRVKADIKTSGLIHCA 161 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeee----------CCceEEEeccCCceEEEE
Confidence 23332221 1 111234556777666554433221111111110 011222222456789999
Q ss_pred EEecCCcEEEEe-eCCCcEEEEECCCC
Q 020461 153 VWGPLNRTIISA-GEDAIVRIWDTETG 178 (326)
Q Consensus 153 ~~~~~~~~l~s~-~~d~~i~~wd~~~~ 178 (326)
+|.+||+.|+.+ |..=.-.+||-...
T Consensus 162 CWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 162 CWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EecCcCCEEEEEeCCeEEEEEecCchh
Confidence 999999877654 33334669996544
No 428
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=83.64 E-value=27 Score=29.83 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=36.8
Q ss_pred CcEEEEeeCCCcEEEEECCCCcccccccc-ccCcceeeEEEEEcCCCCeEEEEeCCCeEE
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAADGSHFLTGSLDKSAK 216 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~ 216 (326)
+.+|+..-..+.|...+++....+..... .......+..++..|||.+.++-..+|.|+
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 45666666667787777764432221111 123445789999999999888888888764
No 429
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.23 E-value=6.6 Score=31.25 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=41.7
Q ss_pred EEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcC
Q 020461 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR 62 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~ 62 (326)
.++...+|++.+++=+.++|...|..+|+.+.+++-.+..|++++|-.
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 344567899999998999999999999999999988899999999964
No 430
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.93 E-value=5.6 Score=21.49 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=21.5
Q ss_pred CCCCeEEEEe-CCCcEEEEEccCCcEEEEEe
Q 020461 62 RDSMTLITGS-ADQTAKLWNVETGAQLFTFN 91 (326)
Q Consensus 62 ~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~ 91 (326)
|++++|+++. .+++|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5677666555 57899999998877665554
No 431
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.92 E-value=20 Score=27.19 Aligned_cols=30 Identities=10% Similarity=0.329 Sum_probs=25.0
Q ss_pred cceeEEEEecCC------cEEEEeeCCCcEEEEECC
Q 020461 147 GRINRAVWGPLN------RTIISAGEDAIVRIWDTE 176 (326)
Q Consensus 147 ~~i~~~~~~~~~------~~l~s~~~d~~i~~wd~~ 176 (326)
+.+..++|||.| ..|+....++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478899999964 478899999999999865
No 432
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=81.76 E-value=37 Score=30.11 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=25.2
Q ss_pred eeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461 192 KTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 192 ~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (326)
..|.++...+....+++.+.+|.|++|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999999889999999999999999974
No 433
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=81.07 E-value=36 Score=29.53 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=51.9
Q ss_pred cceeEEEEecCCcEEEEeeCCCcEEEEECCC-C----c--cccc-cccc-cCcceeeEEEEEcCCCCeEEEEeCC-----
Q 020461 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTET-G----K--LLKE-SDKE-TGHKKTITSLAKAADGSHFLTGSLD----- 212 (326)
Q Consensus 147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~----~--~~~~-~~~~-~~h~~~v~~v~~s~~~~~l~s~s~d----- 212 (326)
.....+++.+++ .++ +......++.|... + + .+.+ +... ..+......+.+.|||.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 345667788877 444 44444333445431 1 1 1111 1110 0123457789999998866654421
Q ss_pred --------------CeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEE
Q 020461 213 --------------KSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVL 249 (326)
Q Consensus 213 --------------g~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~ 249 (326)
|.|.-+|..+++. ..+. .......++|++.++..++
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEE
Confidence 4455556655443 2222 2245678999998766543
No 434
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=80.21 E-value=5.2 Score=19.75 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=19.5
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEE
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVW 37 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw 37 (326)
...++.+++|+++++=+.++.|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4678888999988888777777654
No 435
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=78.41 E-value=35 Score=27.81 Aligned_cols=151 Identities=10% Similarity=0.132 Sum_probs=78.2
Q ss_pred ceeEEEEccCCCEEEeec-CCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE-ccCCcEE-E
Q 020461 12 PLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN-VETGAQL-F 88 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~-~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd-~~~~~~~-~ 88 (326)
.+...+.|++++.++... .++.-.||-...+....... -...+...+|++++...+....+...+++. ..+++.. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 568889999999777655 23333444444433332221 123677888999977666556666667764 2333221 1
Q ss_pred EEec---CCCcceeeeecCCe-EEEEEcCccceeceeeeeeeeccCCCC---CCCceEEEeccCccceeEEEEecCCcEE
Q 020461 89 TFNF---DSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPAD---QGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 89 ~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
.... ...+..+.++++.. ++++..... ...+.+-.+.++... .-.............+..+.|.+++.++
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~---~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGG---GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCC---CCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 1111 12566777887554 444331110 012222233332211 1112222233335678899999998866
Q ss_pred EEeeC
Q 020461 162 ISAGE 166 (326)
Q Consensus 162 ~s~~~ 166 (326)
+.+..
T Consensus 181 V~~~~ 185 (253)
T PF10647_consen 181 VLGRS 185 (253)
T ss_pred EEeCC
Confidence 65444
No 436
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=77.29 E-value=7 Score=19.27 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=19.8
Q ss_pred ceeEEEECCCCceEEeecCCCcEEEee
Q 020461 290 PINALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 290 ~v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
.|.+|+.+ ..++|.+..-+.+|+|.
T Consensus 3 ~i~aia~g--~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAG--DSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEcc--CCEEEEEeCCCeEEecC
Confidence 57788876 46888888899999974
No 437
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.78 E-value=41 Score=33.95 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=30.2
Q ss_pred CcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461 189 GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 189 ~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (326)
.+..+|..+.++.....+.+=+..|+|..||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4567899999998888999999999999999876
No 438
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=76.52 E-value=9.6 Score=20.34 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=22.9
Q ss_pred eEEEEeCCCcEEEEEccCCcEEEEEecC
Q 020461 66 TLITGSADQTAKLWNVETGAQLFTFNFD 93 (326)
Q Consensus 66 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 93 (326)
.++.++.||.+.-.|.++|+.+..++..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 3556689999999999999998877654
No 439
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=76.24 E-value=8 Score=19.55 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=19.9
Q ss_pred eEEEEeCCCeEEEeecCCcceEEE
Q 020461 205 HFLTGSLDKSAKLWDARTLELIKT 228 (326)
Q Consensus 205 ~l~s~s~dg~i~iwd~~~~~~~~~ 228 (326)
.++.++.+|.+...|.++++.+-+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577888899999999998887644
No 440
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=74.99 E-value=29 Score=25.07 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=45.6
Q ss_pred EEEEccCCCEEEeecCCCCeEEEecCCCC--------eeeeccCcccceEEEE---EcCC--CCeEEEEeCCCcEEEEEc
Q 020461 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGE--------RLGTYRGHNGAVWCCD---VSRD--SMTLITGSADQTAKLWNV 81 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--------~~~~~~~h~~~V~~~~---~~~~--~~~l~s~~~d~~i~~wd~ 81 (326)
.-.|......|+++..-++|.|++..... .+..+ .-...|.+|+ |.|+ ...|+.|+. .++-.||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 34677777789999999999999754322 22222 2345666665 3332 335666655 46889999
Q ss_pred cCCcEEEE
Q 020461 82 ETGAQLFT 89 (326)
Q Consensus 82 ~~~~~~~~ 89 (326)
..+..++.
T Consensus 81 ~~N~d~Fy 88 (136)
T PF14781_consen 81 ENNSDLFY 88 (136)
T ss_pred ccCchhhh
Confidence 87765543
No 441
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=74.86 E-value=13 Score=29.22 Aligned_cols=48 Identities=25% Similarity=0.178 Sum_probs=34.5
Q ss_pred CEEEeecCCCCeEEEecCCC--CeeeeccCcccceEEEEEcCCCCeEEEEe
Q 020461 23 DLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGS 71 (326)
Q Consensus 23 ~~l~s~~~d~~v~iw~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~~ 71 (326)
+.|+.+.....|.+|++.+. ....+|.. -+.|..+.++..|++++|-=
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEE
Confidence 44444456678999998833 44556655 47899999999999998753
No 442
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=73.87 E-value=12 Score=22.16 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=20.2
Q ss_pred eeEEEECCCCceEEeecC-----CCcEEEeecCCC
Q 020461 291 INALAFNPDGKSFSSGGE-----DGYVRLHHFDPD 320 (326)
Q Consensus 291 v~~v~~s~d~~~lat~s~-----Dg~i~l~~~~~~ 320 (326)
+.+++.-|||+.|++|.. +....|.++.++
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~D 37 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNAD 37 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCC
Confidence 567888888998888853 334555655543
No 443
>PHA02790 Kelch-like protein; Provisional
Probab=73.72 E-value=71 Score=29.00 Aligned_cols=60 Identities=3% Similarity=-0.064 Sum_probs=28.6
Q ss_pred CCCEEEeecCCC-----CeEEEecCCCCeee--eccCcccceEEEEEcCCCCeEEEEeCCC--cEEEEEcc
Q 020461 21 DGDLLFSCAKDH-----TPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVE 82 (326)
Q Consensus 21 ~~~~l~s~~~d~-----~v~iw~~~~~~~~~--~~~~h~~~V~~~~~~~~~~~l~s~~~d~--~i~~wd~~ 82 (326)
++.+++.||.++ ++..||..++.... .+.........+ .-+++..+.||.++ ++..||..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~ 339 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHG 339 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECC
Confidence 455666776543 45567776665432 221111111112 23566666676542 35555543
No 444
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=73.67 E-value=65 Score=28.57 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=25.7
Q ss_pred cceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 289 GPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 289 ~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
..|.+++..+..+.|.+-+.+|.|++|++.+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999899999999999999999976
No 445
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=73.52 E-value=62 Score=32.55 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=26.8
Q ss_pred ceeEEEECCCCc--eEEeecCCCcEEEeecCCCc
Q 020461 290 PINALAFNPDGK--SFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 290 ~v~~v~~s~d~~--~lat~s~Dg~i~l~~~~~~~ 321 (326)
.+.++.|--||. +|+.+.+|+.|+++.+.|+-
T Consensus 1183 ~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1183 NVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred hceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCC
Confidence 577888877765 58999999999999999974
No 446
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=73.13 E-value=26 Score=33.13 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=54.5
Q ss_pred ceeeeecCCceeEEEEc--cCCCEEEeecCCCCeEEEecCCC-Ceeeecc--CcccceEEEEEcCCC---C---eEEEEe
Q 020461 3 PILMKGHERPLTYLKYN--KDGDLLFSCAKDHTPTVWFADNG-ERLGTYR--GHNGAVWCCDVSRDS---M---TLITGS 71 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s--~~~~~l~s~~~d~~v~iw~~~~~-~~~~~~~--~h~~~V~~~~~~~~~---~---~l~s~~ 71 (326)
|-....-...+..++++ ...++||.+++...|.||-.... +....-+ .|...|-+|+|-++. . .+++++
T Consensus 156 P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d 235 (717)
T PF08728_consen 156 PFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD 235 (717)
T ss_pred CCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe
Confidence 43334445577899998 88889999999999999855432 2211111 255568888886532 2 778899
Q ss_pred CCCcEEEEEc
Q 020461 72 ADQTAKLWNV 81 (326)
Q Consensus 72 ~d~~i~~wd~ 81 (326)
-.|.+.+|++
T Consensus 236 I~G~v~~~~I 245 (717)
T PF08728_consen 236 ISGEVWTFKI 245 (717)
T ss_pred ccCcEEEEEE
Confidence 9999988887
No 447
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=71.65 E-value=15 Score=32.93 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=47.1
Q ss_pred CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 21 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
..-++|.+|.-|.||+||.-..+-...+++-..+|..+..+.+|+++++.+.. ++-+-|+
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~ 631 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDV 631 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence 45689999999999999976555555678888899999999999987766654 4556565
No 448
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.50 E-value=95 Score=29.55 Aligned_cols=39 Identities=0% Similarity=0.009 Sum_probs=31.9
Q ss_pred eeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 192 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 192 ~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
..+..+..||+..+|+-=..+|.|.+-++...++..++.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 457888999999999999999999888877766666654
No 449
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=68.62 E-value=31 Score=22.90 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=26.5
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEE
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 209 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 209 (326)
+.+..+|++.-||..+++....... -.-...|+.++|+.+++.+
T Consensus 31 le~~~~GRll~ydp~t~~~~vl~~~----L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 31 LEGRPTGRLLRYDPSTKETTVLLDG----LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HHT---EEEEEEETTTTEEEEEEEE----ESSEEEEEE-TTSSEEEEE
T ss_pred ecCCCCcCEEEEECCCCeEEEehhC----CCccCeEEEcCCCCEEEEE
Confidence 4466778899999988764322221 2346788999999876654
No 450
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.61 E-value=43 Score=33.41 Aligned_cols=107 Identities=13% Similarity=0.016 Sum_probs=62.2
Q ss_pred ceeEEEEecCCc--EEEEeeCCCcEEEEECCCCccccc--ccc------ccCcceeeEEEEEcCCCC-eEEEEeCCCeEE
Q 020461 148 RINRAVWGPLNR--TIISAGEDAIVRIWDTETGKLLKE--SDK------ETGHKKTITSLAKAADGS-HFLTGSLDKSAK 216 (326)
Q Consensus 148 ~i~~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~--~~~------~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~ 216 (326)
++..++..++.. .++..+++-.|..+|+++.....- ... ......-..++.|.|.-. ..+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 344455555543 334455566788999875432210 000 011122345666776532 466777888888
Q ss_pred EeecCCc-ceEEEEeeccceEEEEeCCCCCeeEEecCCC
Q 020461 217 LWDARTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 217 iwd~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 254 (326)
+..+... ..+.++.......+++|+|-|.+++++-..+
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnG 220 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNG 220 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCC
Confidence 8776532 2233344556788999999999998864433
No 451
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.45 E-value=68 Score=26.67 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=56.9
Q ss_pred EEEeecCCcceEEEEeeccceE---EEEeCCCCCeeEEecC-CC--cceeEeecccCceeeeEeecccceeeeccccccC
Q 020461 215 AKLWDARTLELIKTYVTERPVN---AVTMSPLLDHVVLGGG-QD--ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF 288 (326)
Q Consensus 215 i~iwd~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~-~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~ 288 (326)
..++|....+....+.....-. --+|||++..++.+-. .| ...+..+|.+. .-+.++++..|-
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~-----------~fqrvgE~~t~G 161 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE-----------GFQRVGEFSTHG 161 (366)
T ss_pred EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc-----------ccceecccccCC
Confidence 4678887776666654332222 2358999988876532 22 12333333331 123455566665
Q ss_pred cceeEEEECCCCceEEeecCCCcEEEe-ecCCCceee
Q 020461 289 GPINALAFNPDGKSFSSGGEDGYVRLH-HFDPDYFNI 324 (326)
Q Consensus 289 ~~v~~v~~s~d~~~lat~s~Dg~i~l~-~~~~~~~~~ 324 (326)
=.-..|.+.+||+.++.+ +|-|+.. .|-.+.+|+
T Consensus 162 iGpHev~lm~DGrtlvva--nGGIethpdfgR~~lNl 196 (366)
T COG3490 162 IGPHEVTLMADGRTLVVA--NGGIETHPDFGRTELNL 196 (366)
T ss_pred cCcceeEEecCCcEEEEe--CCceecccccCccccch
Confidence 555789999999998754 5666665 555555554
No 452
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.81 E-value=95 Score=27.72 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=58.4
Q ss_pred cceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-----ccceEEEEeCCCCCeeEEecCCCcceeEeeccc
Q 020461 190 HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 264 (326)
Q Consensus 190 h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~ 264 (326)
.+++|.++.||+|.+.+|.--.|.+|.+++...-+....+.. ...+-+.+|+.+.+..++.. . +
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~-~-G--------- 133 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITD-Q-G--------- 133 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEec-C-C---------
Confidence 356899999999999999999999999999843332222211 12366667766544333321 1 1
Q ss_pred CceeeeEeeccc-ceeeeccccccCcceeEEEECCCCce
Q 020461 265 AGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNPDGKS 302 (326)
Q Consensus 265 ~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~v~~s~d~~~ 302 (326)
+.+|... ....+...+.|...|+=..|.++-..
T Consensus 134 -----~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 134 -----IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred -----eEEEEEchhhhhhhhhhhcccCccEEEEccccce
Confidence 1112111 11123344567778888888887765
No 453
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=66.44 E-value=90 Score=27.27 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=46.7
Q ss_pred ceeEEEEecCCcEEEE-----eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC---------
Q 020461 148 RINRAVWGPLNRTIIS-----AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--------- 213 (326)
Q Consensus 148 ~i~~~~~~~~~~~l~s-----~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg--------- 213 (326)
.+..--|.|+|..|.. ++.+..|.-+|..+++... +. .......+..++||++++-=+.|.
T Consensus 239 ~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-~~----~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~ 313 (386)
T PF14583_consen 239 SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-LM----EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGG 313 (386)
T ss_dssp EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE-EE----EE-SEEEEEE-TTSSEEEEEE------------
T ss_pred ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE-EE----eCCceeeeEEcCCCCEEEecCCCCCcccccccc
Confidence 3455668899875543 2335567777877765422 11 112234566778988776544432
Q ss_pred -------eEEEeecCCcceEEEEeec-----------cceEEEEeCCCCCeeEEecC
Q 020461 214 -------SAKLWDARTLELIKTYVTE-----------RPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 214 -------~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~s~~~~~~~~~~~ 252 (326)
-|++++++.+....--.+. ..=.-..|+|+++.++..+.
T Consensus 314 ~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 314 YKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp -------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred ceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 4667787765432211111 01235788999998876543
No 454
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=66.42 E-value=0.92 Score=39.78 Aligned_cols=141 Identities=13% Similarity=0.164 Sum_probs=78.9
Q ss_pred EEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEE-EeCCCeEEEeecCCcceEEEE
Q 020461 151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKTY 229 (326)
Q Consensus 151 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~ 229 (326)
...|.|.+..++.++.+..+..||-.. +...... .......++|+.++..++. +-..+.+.+||+.+. ..+++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n----~tg~aldm~wDkegdvlavlAek~~piylwd~n~e-ytqqL 112 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN----PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE-YTQQL 112 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc-ceecccC----CchhHhhhhhccccchhhhhhhcCCCeeechhhhh-hHHHH
Confidence 345677777789999999999999653 3332221 2345667788888776554 445788999998752 11222
Q ss_pred ee--ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeec
Q 020461 230 VT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 307 (326)
Q Consensus 230 ~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s 307 (326)
.. ...-.-+.|++.....+++--.+ .+.+++-...........|...+.++++.+.+ +.+.++
T Consensus 113 E~gg~~s~sll~wsKg~~el~ig~~~g--------------n~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~d 177 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTPELVIGNNAG--------------NIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCD 177 (615)
T ss_pred hccCcchHHHHhhccCCcccccccccc--------------ceEEEeccchhhhhhhcccccceeEEEecccc-eeeecC
Confidence 21 11122244555544444431111 12233322222222333388899999999854 444566
Q ss_pred CCCcE
Q 020461 308 EDGYV 312 (326)
Q Consensus 308 ~Dg~i 312 (326)
.|..+
T Consensus 178 cd~~L 182 (615)
T KOG2247|consen 178 CDNTL 182 (615)
T ss_pred cHHHH
Confidence 56544
No 455
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=65.28 E-value=25 Score=29.20 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=38.4
Q ss_pred CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe------CCCcEEEEEccCC
Q 020461 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS------ADQTAKLWNVETG 84 (326)
Q Consensus 32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~------~d~~i~~wd~~~~ 84 (326)
..|++||..+.+...--.+-.+.|..+.|..+.+.++.|. ....+..||.++.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 4688999888877665566678999999986666666664 3445667777654
No 456
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=65.21 E-value=1.2e+02 Score=28.17 Aligned_cols=102 Identities=15% Similarity=0.207 Sum_probs=61.3
Q ss_pred eeeEEEEEcCC----CCeEEEEeCCCeEEEeecCC-----cceEEEEe--e----ccceEEEEeCCCCCeeEEecCCCcc
Q 020461 192 KTITSLAKAAD----GSHFLTGSLDKSAKLWDART-----LELIKTYV--T----ERPVNAVTMSPLLDHVVLGGGQDAS 256 (326)
Q Consensus 192 ~~v~~v~~s~~----~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~--~----~~~~~~~~~s~~~~~~~~~~~~~~~ 256 (326)
+.|..+.|.|- -..+++--....|.+|.+.. .+.+..-. . +--..++.|+|....+.+-...|..
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 45888999874 44677888889999998752 22222211 1 1235678899998887766666654
Q ss_pred eeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee
Q 020461 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 306 (326)
Q Consensus 257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~ 306 (326)
.+.. .+.....++ ..++ -.+.|.|-+|..||..|+.+
T Consensus 137 V~~s--V~~d~srVk----------aDi~-~~G~IhCACWT~DG~RLVVA 173 (671)
T PF15390_consen 137 VLPS--VHCDSSRVK----------ADIK-TSGLIHCACWTKDGQRLVVA 173 (671)
T ss_pred Eeee--eeeCCceEE----------Eecc-CCceEEEEEecCcCCEEEEE
Confidence 3322 111111111 1122 34679999999999876443
No 457
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=64.05 E-value=8.3 Score=23.32 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=19.4
Q ss_pred CceEEeecCCCcEEEeecCCCceee
Q 020461 300 GKSFSSGGEDGYVRLHHFDPDYFNI 324 (326)
Q Consensus 300 ~~~lat~s~Dg~i~l~~~~~~~~~~ 324 (326)
...||.-+.||.|+||.|+|+.=.+
T Consensus 29 ~N~Fav~~e~~~iKIfkyd~~tNei 53 (63)
T PF14157_consen 29 HNHFAVVDEDGQIKIFKYDEDTNEI 53 (63)
T ss_dssp TTEEEEE-ETTEEEEEEEETTTTEE
T ss_pred CCEEEEEecCCeEEEEEeCCCCCeE
Confidence 5567777999999999999986544
No 458
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=63.34 E-value=79 Score=30.41 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=49.8
Q ss_pred CceeeeecCCceeEEEEc----cCCC--EEEeecCCCCeEEE-ecCC---C-C-eeeecc--CcccceEEEEEcCCCCeE
Q 020461 2 RPILMKGHERPLTYLKYN----KDGD--LLFSCAKDHTPTVW-FADN---G-E-RLGTYR--GHNGAVWCCDVSRDSMTL 67 (326)
Q Consensus 2 ~~~~~~~h~~~i~~~~~s----~~~~--~l~s~~~d~~v~iw-~~~~---~-~-~~~~~~--~h~~~V~~~~~~~~~~~l 67 (326)
+|++++..+...+.++.+ .+++ .|+.|..+|+|.-- ...+ . + .+.+++ -+..+|..+.+++..+.|
T Consensus 399 ~P~l~~~~~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~L 478 (737)
T KOG3611|consen 399 RPLLVKTGDYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSL 478 (737)
T ss_pred CceEEecccceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeE
Confidence 566666545556777776 5665 46778899887532 2111 1 1 232322 234789999999988889
Q ss_pred EEEeCCCcEEE
Q 020461 68 ITGSADQTAKL 78 (326)
Q Consensus 68 ~s~~~d~~i~~ 78 (326)
+.|+..+.++|
T Consensus 479 yVgs~~gV~qv 489 (737)
T KOG3611|consen 479 YVGSRSGVVQV 489 (737)
T ss_pred EEEccCcEEEe
Confidence 99999986664
No 459
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=63.17 E-value=92 Score=26.26 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=53.7
Q ss_pred ceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc-ceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceee
Q 020461 191 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE 269 (326)
Q Consensus 191 ~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 269 (326)
...+..+.-++||.++++++.-..+.-||.... =..+.......+..+.|+|++...+++ .++.+..+.+.. .
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~--~Gg~~~~s~~~~----~ 217 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA--RGGQIQFSDDPD----D 217 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE--TTTEEEEEE-TT----E
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe--CCcEEEEccCCC----C
Confidence 356788888999998888877666778886532 222333345789999999996654544 223222221000 1
Q ss_pred eEeecccceeeeccccccCcceeEEEECCCCceEEeecCC
Q 020461 270 AKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED 309 (326)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D 309 (326)
..-|... ...+..-.-.+.+++|.++....|+|+..
T Consensus 218 ~~~w~~~----~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 218 GETWSEP----IIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEEE-------B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccccccc----cCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 1222221 11111112248999999998888877654
No 460
>PHA03098 kelch-like protein; Provisional
Probab=61.02 E-value=1.4e+02 Score=27.53 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=32.4
Q ss_pred CCcEEEEeeCC------CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC--------eEEEeecCC
Q 020461 157 LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--------SAKLWDART 222 (326)
Q Consensus 157 ~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg--------~i~iwd~~~ 222 (326)
+++.++.||.+ ..+..||+.+.+... ........... +.+ ..++...+.|+.++ .+..||.++
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 45666667632 357889987655432 11111111111 122 23455566665432 378888876
Q ss_pred cc
Q 020461 223 LE 224 (326)
Q Consensus 223 ~~ 224 (326)
.+
T Consensus 466 ~~ 467 (534)
T PHA03098 466 NK 467 (534)
T ss_pred Cc
Confidence 53
No 461
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=60.20 E-value=1.8e+02 Score=28.77 Aligned_cols=120 Identities=18% Similarity=0.060 Sum_probs=63.4
Q ss_pred eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce--EEEEeeccceEEEEeCCCCC--e---eEEecCCCc-ceeEeeccc
Q 020461 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTYVTERPVNAVTMSPLLD--H---VVLGGGQDA-SAVTTTDHR 264 (326)
Q Consensus 193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~s~~~~--~---~~~~~~~~~-~~~~~~d~~ 264 (326)
.++....+.+...++.++.++.+...++..+.. +.+...+..+.|+.++|.++ . ++..|.++. ..+......
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd 568 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD 568 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence 344555556666788888777777777665442 22223456788999997743 2 333222222 111111100
Q ss_pred CceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 265 AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
... ...+... ...-...|.-..|-.|..+|.++..||.+.-|.++.+.
T Consensus 569 ~~~--------~~~~~l~-~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~t 616 (1096)
T KOG1897|consen 569 LIL--------ITHEQLS-GEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINT 616 (1096)
T ss_pred cce--------eeeeccC-CCccchheeeEEeeccceEEEEEcCCceEEEEEEEccc
Confidence 000 0000000 00111234455555678899999999999998888764
No 462
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=59.76 E-value=1.3e+02 Score=27.02 Aligned_cols=52 Identities=13% Similarity=0.076 Sum_probs=33.9
Q ss_pred eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce--EEEEe------eccceEEEEeCCCC
Q 020461 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTYV------TERPVNAVTMSPLL 244 (326)
Q Consensus 193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~------~~~~~~~~~~s~~~ 244 (326)
....+++.|||..|++--..|.|++++..++.. +..+. .+.-...++++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 357889999997777665569999998655432 11111 12345788898875
No 463
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=58.47 E-value=31 Score=32.67 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=28.1
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 52 ~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
...+.++.-+|.++-+++++.||+|++|+....+
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 3457778888999999999999999999976543
No 464
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=58.42 E-value=99 Score=25.10 Aligned_cols=56 Identities=23% Similarity=0.218 Sum_probs=33.3
Q ss_pred EEcCCCCeEEEEeC-C--CeEEEeecCC---cceEE----EEeeccceEEEEeCCCCCeeEEecCC
Q 020461 198 AKAADGSHFLTGSL-D--KSAKLWDART---LELIK----TYVTERPVNAVTMSPLLDHVVLGGGQ 253 (326)
Q Consensus 198 ~~s~~~~~l~s~s~-d--g~i~iwd~~~---~~~~~----~~~~~~~~~~~~~s~~~~~~~~~~~~ 253 (326)
.+.+||..+.+|+. | ..+++++... ..... .+...+.-.....-++|+.++++|..
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC
Confidence 46789999999886 3 3478887654 11111 11222333345566888877777654
No 465
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=58.41 E-value=37 Score=32.90 Aligned_cols=107 Identities=19% Similarity=0.348 Sum_probs=55.7
Q ss_pred eCCCeEEEeecCCcceEEEEee-ccceEEE-EeCC-------CCCe-eEEecCCCcceeE-eecccCceeeeEeecccce
Q 020461 210 SLDKSAKLWDARTLELIKTYVT-ERPVNAV-TMSP-------LLDH-VVLGGGQDASAVT-TTDHRAGKFEAKFFDKILQ 278 (326)
Q Consensus 210 s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~-~~s~-------~~~~-~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~ 278 (326)
+.|+.+.+||..+....+.+.. ...+..+ .+-| .-++ ++++...+...++ ..|.+.+ +..++++-..
T Consensus 99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~--Els~fnTgl~ 176 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTG--ELSLFNTGLV 176 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccc--eeEEEecceE
Confidence 4578899999987644443321 1111111 1112 2222 2233333322222 2344444 3445555444
Q ss_pred eeeccccccCcceeEEEECCCCceEEeecCCCcEEEe----ecCCCceeee
Q 020461 279 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH----HFDPDYFNIK 325 (326)
Q Consensus 279 ~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~----~~~~~~~~~~ 325 (326)
..+++ -.|.|+.=+-+|+.|.+|-.| +.+| +..++|||.|
T Consensus 177 vsvqG-----inV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnsk 220 (1263)
T COG5308 177 VSVQG-----INVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSK 220 (1263)
T ss_pred EeccC-----ceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhh
Confidence 44333 258888877789999999988 5554 4456666644
No 466
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.29 E-value=1.9e+02 Score=29.59 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=33.9
Q ss_pred ccCcceeEEEECCCCceEEeecCCCcEEEeecCCCcee
Q 020461 286 GHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN 323 (326)
Q Consensus 286 ~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~ 323 (326)
++.++|..++.....+.+.+=++.|+|+.|.+.+++..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~ 277 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLG 277 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCCCcc
Confidence 67789999999988889999999999999999887654
No 467
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=57.19 E-value=24 Score=23.21 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=22.3
Q ss_pred eeEEEECCCCceEEee-cCCCcEEEeecCC
Q 020461 291 INALAFNPDGKSFSSG-GEDGYVRLHHFDP 319 (326)
Q Consensus 291 v~~v~~s~d~~~lat~-s~Dg~i~l~~~~~ 319 (326)
-+.|+++|++++|..+ ...+.|+++..+.
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4779999999987544 5579999987654
No 468
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=56.12 E-value=2.2e+02 Score=28.49 Aligned_cols=110 Identities=16% Similarity=0.229 Sum_probs=61.0
Q ss_pred EEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc
Q 020461 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI 276 (326)
Q Consensus 198 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 276 (326)
++.|-+.++++|- ...+++||+...+++++..... +.......-....++++...+......++...+.+ +.+.+..
T Consensus 940 Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l-~~fadD~ 1017 (1205)
T KOG1898|consen 940 AICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQL-IVFADDP 1017 (1205)
T ss_pred EEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeE-EEEeCCC
Confidence 3445555555554 4689999998887777654332 22222233345567777666665555544333322 2222222
Q ss_pred ceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 277 LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 277 ~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
. ...|+++.+- |-..+|-+..-|.+.+-+++++
T Consensus 1018 ~----------pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1018 V----------PRHVTALELL-DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred c----------cceeeEEEEe-cCCceeeccccCcEEEEECCCc
Confidence 1 1245555553 5566777777788887777664
No 469
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=55.72 E-value=25 Score=18.86 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=15.2
Q ss_pred CCeEEEEeCCCeEEEeecCC
Q 020461 203 GSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 203 ~~~l~s~s~dg~i~iwd~~~ 222 (326)
+..+..++.||.++-.|.++
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 45788999999999998764
No 470
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=55.70 E-value=1.3e+02 Score=25.47 Aligned_cols=268 Identities=13% Similarity=0.135 Sum_probs=115.5
Q ss_pred cCCceeEEEEccCCCEEEeecCCCCeEEEecCCC-Ceeee--ccCc---ccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGT--YRGH---NGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~-~~~~~--~~~h---~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
-..++..+.|..+..-++.| ..+. |+...++ +.-.. .... .-...++.|..+ +.+ .++..+ +-+...+
T Consensus 15 t~~~l~dV~F~d~~~G~~VG-~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~-ivG~~g-~ll~T~D 88 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVG-AYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGW-IVGEPG-LLLHTTD 88 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEE-TTTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEE-EEEETT-EEEEESS
T ss_pred CCCceEEEEEecCCEEEEEe-cCCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceE-EEcCCc-eEEEecC
Confidence 35578899999555555554 4454 3333333 22111 1111 123567777543 333 345555 3355556
Q ss_pred CCcEEEEEecCCC----cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461 83 TGAQLFTFNFDSP----ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (326)
Q Consensus 83 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (326)
.|+.........+ ...+.........++.... .+.+. .+.+..-........+.+..+..++++
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G--------~iy~T----~DgG~tW~~~~~~~~gs~~~~~r~~dG 156 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRG--------AIYRT----TDGGKTWQAVVSETSGSINDITRSSDG 156 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----------EEEE----SSTTSSEEEEE-S----EEEEEE-TTS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCC--------cEEEe----CCCCCCeeEcccCCcceeEeEEECCCC
Confidence 6665554432211 1112212222222221110 01110 112222233344555778888889999
Q ss_pred cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEee-cCCcceEEEEeec-----
Q 020461 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD-ARTLELIKTYVTE----- 232 (326)
Q Consensus 159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd-~~~~~~~~~~~~~----- 232 (326)
.+++.+..-....-||.-.... .... ..-+..+.++.|.|++...+.+ ..|.|++=+ ....+....-..+
T Consensus 157 ~~vavs~~G~~~~s~~~G~~~w-~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~ 232 (302)
T PF14870_consen 157 RYVAVSSRGNFYSSWDPGQTTW-QPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNG 232 (302)
T ss_dssp -EEEEETTSSEEEEE-TT-SS--EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred cEEEEECcccEEEEecCCCccc-eEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCc
Confidence 9988887777777888532211 1111 1234679999999998765544 888888887 3333333321111
Q ss_pred cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcE
Q 020461 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYV 312 (326)
Q Consensus 233 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i 312 (326)
..+-.+++.+... +.++++.+ ..+.+.|.-.. |.. ......-.+....|.|.++.+-||.| .||.|
T Consensus 233 ~~~ld~a~~~~~~-~wa~gg~G-~l~~S~DgGkt------W~~-----~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~l 298 (302)
T PF14870_consen 233 YGILDLAYRPPNE-IWAVGGSG-TLLVSTDGGKT------WQK-----DRVGENVPSNLYRIVFVNPDKGFVLG-QDGVL 298 (302)
T ss_dssp S-EEEEEESSSS--EEEEESTT--EEEESSTTSS-------EE------GGGTTSSS---EEEEEETTEEEEE--STTEE
T ss_pred eeeEEEEecCCCC-EEEEeCCc-cEEEeCCCCcc------ceE-----CccccCCCCceEEEEEcCCCceEEEC-CCcEE
Confidence 1256678887644 44455544 34445553221 111 11111223467889997666666655 46654
No 471
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.49 E-value=2.4e+02 Score=28.57 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=36.9
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 225 (326)
+.+...+.+-.|+....-..+.. .+.....++++..++++-.||.+.+||...+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 213 LIGFNRGLVVIKDRASKYVQSAY--------LPNGQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ceeeeeeeeeehhcccccchhhc--------ccccccCccCCceEEEEEecCCEEeeecCCCce
Confidence 34555667777775543322222 122222278899999999999999999988755
No 472
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=54.85 E-value=35 Score=32.33 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=42.7
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd 80 (326)
...+++++-+|.|+-++.++.||++++|+.......+.+.. ..+-..+-|...| |+++.+|..+--|.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeeccc--eEEEeccchhheee
Confidence 34567888889999999999999999999765443222222 2222333343322 55666666665664
No 473
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=53.33 E-value=2.3e+02 Score=27.67 Aligned_cols=86 Identities=21% Similarity=0.165 Sum_probs=55.1
Q ss_pred ceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE-eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceee
Q 020461 191 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE 269 (326)
Q Consensus 191 ~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 269 (326)
...|.+++...-+..++-+..||+|.+.|..+.+.+... ..+.+.+. +.+-.+.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~----------v~s~~~~--------------- 313 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNT----------VTSLFQA--------------- 313 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccc----------ccccccc---------------
Confidence 356788888888889999999999999999887765443 00000000 0000000
Q ss_pred eEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461 270 AKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 313 (326)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~ 313 (326)
+-.+ .+..++.-++|||.+..++.-..||.+.
T Consensus 314 --------Gf~f----p~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 314 --------GFHF----PCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred --------cccc----ccCCCCceEEECcccceEEEEecCCCce
Confidence 0000 1112566799999999999999999977
No 474
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=53.29 E-value=1.7e+02 Score=26.12 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=35.3
Q ss_pred cEEEEeeCCCcEEEEECCCCccc-cccccccCcceeeEEEEEcC----CCCeEEEEeCCCeEEEeec
Q 020461 159 RTIISAGEDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAA----DGSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 159 ~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~h~~~v~~v~~s~----~~~~l~s~s~dg~i~iwd~ 220 (326)
..|+.|+..|.++|++....... ..+.....-..+|..+..-+ .....++--.-..+.+|.+
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v 104 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSV 104 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEE
Confidence 47899999999999998543311 11111112345677775421 2223334455566777766
No 475
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=52.85 E-value=1.7e+02 Score=26.08 Aligned_cols=146 Identities=15% Similarity=0.192 Sum_probs=76.2
Q ss_pred CCeEEEEeCCCcEEEEEccCCc-----EEEEEecCCCcceeeee---c---CCeEEEEEcCccceeceeeeeeeecc-CC
Q 020461 64 SMTLITGSADQTAKLWNVETGA-----QLFTFNFDSPARSVDFA---V---GDKLAVITTDPFMELNSAIHVKRIAR-DP 131 (326)
Q Consensus 64 ~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 131 (326)
...++.||.+|.+|+|++..++ .+...+...|+..+... . ...++++.+.+ +.+..+.. ..
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~k-------l~vY~v~~~~g 109 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRK-------LSVYSVSLVDG 109 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCE-------EEEEEEEecCC
Confidence 4589999999999999986543 34444556666555432 1 12233332221 11111111 00
Q ss_pred CCCCCc--eEEEeccCc--cceeEEEEecCC-----cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC
Q 020461 132 ADQGGE--SVLILKGPQ--GRINRAVWGPLN-----RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD 202 (326)
Q Consensus 132 ~~~~~~--~~~~~~~~~--~~i~~~~~~~~~-----~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~ 202 (326)
....+. .+.....|. .....+++-|.| ..+..=+-||.+.+++-+.......+. ..-.. -.+.+.+.
T Consensus 110 ~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp-~~llP---gPl~Y~~~ 185 (418)
T PF14727_consen 110 TVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP-DFLLP---GPLCYCPR 185 (418)
T ss_pred CcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC-CCCCC---cCeEEeec
Confidence 001111 111222222 122233333332 367778999999999976533221111 11122 24567777
Q ss_pred CCeEEEEeCCCeEEEeec
Q 020461 203 GSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 203 ~~~l~s~s~dg~i~iwd~ 220 (326)
...|++++.+..+.-|..
T Consensus 186 tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 186 TDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCEEEEecCceeEEEecH
Confidence 778999999888888865
No 476
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=52.73 E-value=87 Score=22.70 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=48.1
Q ss_pred EecCCcEEEEeeCCCcEEEEECCCCcccc-----ccccccCcceeeEEEEEcC-----CCCeEEEEeCCCeEEEeecCCc
Q 020461 154 WGPLNRTIISAGEDAIVRIWDTETGKLLK-----ESDKETGHKKTITSLAKAA-----DGSHFLTGSLDKSAKLWDARTL 223 (326)
Q Consensus 154 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-----~~~~~~~h~~~v~~v~~s~-----~~~~l~s~s~dg~i~iwd~~~~ 223 (326)
|....+.|+.+..-+.|.|.+........ .+. ...-...|++++--+ +...|+.|+. .++..||+...
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~-~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDIS-FLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCcee-EEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 44444567788888888888875432111 000 011235577775332 3456777765 57899999876
Q ss_pred ceEEEEeeccceEEEEe
Q 020461 224 ELIKTYVTERPVNAVTM 240 (326)
Q Consensus 224 ~~~~~~~~~~~~~~~~~ 240 (326)
.-+..-..+.-++++.+
T Consensus 84 ~d~Fyke~~DGvn~i~~ 100 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVI 100 (136)
T ss_pred chhhhhhCccceeEEEE
Confidence 54433333444666555
No 477
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=52.45 E-value=2.3e+02 Score=27.60 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=43.6
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccc--------cC-cceeeEEEEEcC--CCCeEEEEeC----------CCeEE
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKE--------TG-HKKTITSLAKAA--DGSHFLTGSL----------DKSAK 216 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--------~~-h~~~v~~v~~s~--~~~~l~s~s~----------dg~i~ 216 (326)
+..++.++.|+.+.-.|.++|+.+-.+... .+ ....-.....+| .+..++.|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 346777888898888888888776433110 00 000000111111 1335666643 68899
Q ss_pred EeecCCcceEEEEee
Q 020461 217 LWDARTLELIKTYVT 231 (326)
Q Consensus 217 iwd~~~~~~~~~~~~ 231 (326)
-+|.++++.+-.+..
T Consensus 340 A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 340 AFDVNTGALVWAWDP 354 (764)
T ss_pred EEECCCCcEeeEEec
Confidence 999999999888753
No 478
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=51.61 E-value=1.5e+02 Score=25.07 Aligned_cols=209 Identities=16% Similarity=0.152 Sum_probs=104.2
Q ss_pred eEEEEccCCCEEEeecCCCCeEEEecC------CC-CeeeeccC-----cccceEEEEEcCCC------------CeEEE
Q 020461 14 TYLKYNKDGDLLFSCAKDHTPTVWFAD------NG-ERLGTYRG-----HNGAVWCCDVSRDS------------MTLIT 69 (326)
Q Consensus 14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~------~~-~~~~~~~~-----h~~~V~~~~~~~~~------------~~l~s 69 (326)
.-++|+|.+.+-++....+...+|+.. .. .++-++.. -.+..+.+.|+... ..++-
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 578999999999988888999999986 11 22333331 11234444444211 23677
Q ss_pred EeCCCcEEEEEccCCcE---EEEEecCCC-c----ceeeeec---CCeEEEEEcCccceeceeeeeeeeccCCC------
Q 020461 70 GSADQTAKLWNVETGAQ---LFTFNFDSP-A----RSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPA------ 132 (326)
Q Consensus 70 ~~~d~~i~~wd~~~~~~---~~~~~~~~~-~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 132 (326)
+++||+|.-|...-+.. ......+.. . ..+.+.. ++.+.+.- ..+..+.+.+-...+.
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaad-----F~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAAN-----FRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEec-----cCCCceEEecCccccccCCCCc
Confidence 89999999998644332 111111111 0 1111111 11111110 0122222211111000
Q ss_pred ----CCCC---ceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC----
Q 020461 133 ----DQGG---ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA---- 201 (326)
Q Consensus 133 ----~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~---- 201 (326)
...+ -.+..+ +..-.|+.....+....=+.|-.-|.|-++|+. ++.++.+.. .+.......++..|
T Consensus 181 ~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as-~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVAS-SGRLNAPWGLAIAPESFG 257 (336)
T ss_pred cCCCCCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEecc-CCcccCCceeeeChhhhC
Confidence 0000 000000 001112233333433333456667889999985 566655432 23344455666543
Q ss_pred --CCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 202 --DGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 202 --~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
.+..|+----||+|-.+|..+++.+-.+.
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 35556655569999999999988776654
No 479
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=51.26 E-value=68 Score=23.24 Aligned_cols=64 Identities=22% Similarity=0.183 Sum_probs=45.2
Q ss_pred EEEeeCCCcEEEEECCCCccccccccccCcceeeEE-----------EEEcCCCCeEEEEeCCCeEEEeecCCcceE
Q 020461 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS-----------LAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~-----------v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 226 (326)
.+....||.|.++|..+++.+..+.. ++.+-+.. -....+..+-++--.||.+.+-|..|+..+
T Consensus 44 ~f~d~~~G~v~V~~~~~G~~va~~~~--g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL~Dp~Tg~~i 118 (135)
T TIGR03054 44 VFEDRPDGAVAVVETPDGRLVAILEP--GQNGFVRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTLTDPATGWSI 118 (135)
T ss_pred EEecCCCCeEEEEECCCCCEEEEecC--CCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEEEcCCCCcEE
Confidence 45677888888888888887765542 22222211 114567789999999999999999988754
No 480
>PHA02790 Kelch-like protein; Provisional
Probab=49.98 E-value=2e+02 Score=26.12 Aligned_cols=63 Identities=10% Similarity=0.163 Sum_probs=33.9
Q ss_pred cCCCEEEeecCC--CCeEEEecCCCCeee--eccCcccceEEEEEcCCCCeEEEEeCCC---cEEEEEccCC
Q 020461 20 KDGDLLFSCAKD--HTPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSADQ---TAKLWNVETG 84 (326)
Q Consensus 20 ~~~~~l~s~~~d--~~v~iw~~~~~~~~~--~~~~h~~~V~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~ 84 (326)
-++.+.+.||.+ .++..|+..++.... .+....... +++ .-+++..+.||.++ ++..||+.++
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCC
Confidence 467777777753 356778766654432 222111111 111 22567667777553 4678887664
No 481
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=49.84 E-value=1.6e+02 Score=25.03 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=18.2
Q ss_pred CceeEEEEccCCCEEEeecCCCC
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHT 33 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~ 33 (326)
+.+..+.+.+++..+++-|.++.
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~ 42 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGP 42 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCC
Confidence 45788999977777777888887
No 482
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=49.75 E-value=1.3e+02 Score=23.85 Aligned_cols=56 Identities=18% Similarity=0.146 Sum_probs=37.0
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEeecC--CcceEEEEeeccceEEEEeCCCCCeeEEe
Q 020461 194 ITSLAKAADGSHFLTGSLDKSAKLWDAR--TLELIKTYVTERPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 194 v~~v~~s~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 250 (326)
...++.++.+..|++ .....|..|++. ..+....+..-..+..+.++..|+.+++-
T Consensus 20 P~~~c~~g~d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 20 PTAVCCGGPDALFVA-ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred cceeeccCCceEEEE-cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEE
Confidence 344444443333343 555779999988 34555666666788899999999887753
No 483
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=49.29 E-value=6.2 Score=18.60 Aligned_cols=9 Identities=56% Similarity=1.294 Sum_probs=6.2
Q ss_pred EECCCCceE
Q 020461 295 AFNPDGKSF 303 (326)
Q Consensus 295 ~~s~d~~~l 303 (326)
.|||+|+.+
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 478888754
No 484
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=49.12 E-value=96 Score=27.90 Aligned_cols=58 Identities=12% Similarity=0.030 Sum_probs=38.5
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe--eeecc-----CcccceEEEEEcCC
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYR-----GHNGAVWCCDVSRD 63 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~--~~~~~-----~h~~~V~~~~~~~~ 63 (326)
+.........++|.|||++|++--..|.|++++-.++.. +..+. .-.+-...|+++|+
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 333445568999999998887665569999987554432 22221 12456889999987
No 485
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=46.94 E-value=1.5e+02 Score=25.85 Aligned_cols=43 Identities=16% Similarity=0.020 Sum_probs=27.6
Q ss_pred EEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEe
Q 020461 208 TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 208 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 250 (326)
.+..+|.+.-||..+.+...-+..-.-.|.+++||+++.++.+
T Consensus 194 ~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~ 236 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVA 236 (376)
T ss_pred cCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEE
Confidence 3345677777887765432212222457899999999998765
No 486
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=45.21 E-value=3.1e+02 Score=26.85 Aligned_cols=153 Identities=16% Similarity=0.099 Sum_probs=0.0
Q ss_pred CCceeEEEEcc-CCCEEEeecCCCCeEEEec-----CCCCeeeeccCcccce------E----EEEEcCCCCeEEEEeCC
Q 020461 10 ERPLTYLKYNK-DGDLLFSCAKDHTPTVWFA-----DNGERLGTYRGHNGAV------W----CCDVSRDSMTLITGSAD 73 (326)
Q Consensus 10 ~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~-----~~~~~~~~~~~h~~~V------~----~~~~~~~~~~l~s~~~d 73 (326)
..+...++|+| +.+.||.....|...||++ ...........+.+.+ . .+.|.++-+.|+.++..
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Q ss_pred CcEEEEEccCCcE---EEEEecCCCcceeeeecC--CeEEEEEcCccceeceee---eeeeeccCCCCCCC----ceEEE
Q 020461 74 QTAKLWNVETGAQ---LFTFNFDSPARSVDFAVG--DKLAVITTDPFMELNSAI---HVKRIARDPADQGG----ESVLI 141 (326)
Q Consensus 74 ~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~ 141 (326)
.+.++|++++.. +....-...+..+.-.+. +.++++.+...+.+...- ....+...+..... -.+..
T Consensus 225 -~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~~~~~~~llSwkH~~d~~D~tLrl~~ 303 (765)
T PF10214_consen 225 -KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSSSEKLTRLLSWKHFRDPEDPTLRLSV 303 (765)
T ss_pred -ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccCCCCCeeeeeecccccCCCCCceEEEE
Q ss_pred eccCccceeEEEEecCCcEEEE
Q 020461 142 LKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~l~s 163 (326)
.........++.|++....+.+
T Consensus 304 ~~~~~~~~~~~lyS~~~~~v~v 325 (765)
T PF10214_consen 304 QKVGDTDFVVFLYSRLNPLVYV 325 (765)
T ss_pred EEcCCCEEEEEEEcCCCCcEEE
No 487
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=45.00 E-value=2e+02 Score=24.61 Aligned_cols=12 Identities=25% Similarity=0.637 Sum_probs=8.6
Q ss_pred CCCceEEeecCC
Q 020461 298 PDGKSFSSGGED 309 (326)
Q Consensus 298 ~d~~~lat~s~D 309 (326)
.+++..+.|+.+
T Consensus 256 ~~~~Iyv~GG~~ 267 (346)
T TIGR03547 256 SNGVLLVAGGAN 267 (346)
T ss_pred ECCEEEEeecCC
Confidence 367888888764
No 488
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=44.48 E-value=1.7e+02 Score=23.76 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=22.3
Q ss_pred EEEEecCCcEEEEeeCCCcEEEEECCCCccccccc
Q 020461 151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185 (326)
Q Consensus 151 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 185 (326)
.+-.-|+|+.|+.+..+.. |||..+.+.++++.
T Consensus 174 ~~~llPdG~lFi~an~~s~--i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 174 FVHLLPDGNLFIFANRGSI--IYDYKTNTVVRTLP 206 (243)
T ss_pred eEEEcCCCCEEEEEcCCcE--EEeCCCCeEEeeCC
Confidence 4556789999988876554 56877765545443
No 489
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=44.42 E-value=1.1e+02 Score=29.63 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=50.0
Q ss_pred cceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccc----cc--------cc----CcceeeEEEEEcCCCCeEEEEe
Q 020461 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES----DK--------ET----GHKKTITSLAKAADGSHFLTGS 210 (326)
Q Consensus 147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~----~~--------~~----~h~~~v~~v~~s~~~~~l~s~s 210 (326)
+.|.++.....+..++..-.||+|.+.|..+-+.+... .. .. .+...+..+++||++.-++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45667777777788999999999999998876544332 10 01 1122345588999999999999
Q ss_pred CCCeEE
Q 020461 211 LDKSAK 216 (326)
Q Consensus 211 ~dg~i~ 216 (326)
.+|.++
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 998866
No 490
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=42.47 E-value=3.4e+02 Score=26.54 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=54.1
Q ss_pred eEEEEecCCcEEEEeeCCC-----cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461 150 NRAVWGPLNRTIISAGEDA-----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (326)
Q Consensus 150 ~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~ 224 (326)
..+.|.|+|..++|-+.|| .|..+..+ |-.-.++....+....+..++|......++.+ ..+.+++|-.++..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccC-CcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence 3578999999999876555 35555433 21111222223445556677776655444433 34679999877643
Q ss_pred eEEEEe-eccceEEEEeCCCCCee
Q 020461 225 LIKTYV-TERPVNAVTMSPLLDHV 247 (326)
Q Consensus 225 ~~~~~~-~~~~~~~~~~s~~~~~~ 247 (326)
=.-+.. ....+..+.|+|.....
T Consensus 328 WYLK~e~~ip~~s~vkwhpe~~nT 351 (1243)
T COG5290 328 WYLKVERQIPGISYVKWHPEEKNT 351 (1243)
T ss_pred EEEEEeecCCCcceeeeccccCcE
Confidence 222211 12346677888876543
No 491
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=42.26 E-value=52 Score=17.63 Aligned_cols=21 Identities=5% Similarity=0.077 Sum_probs=17.9
Q ss_pred ceeEEEEccCCCEEEeecCCC
Q 020461 12 PLTYLKYNKDGDLLFSCAKDH 32 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~ 32 (326)
....++++++|+..++|..++
T Consensus 14 ~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECCCCCEEEEEeecC
Confidence 468899999999999988765
No 492
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=39.81 E-value=2.4e+02 Score=24.10 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=33.3
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEEecCCCCe---eeec----cCcccceEEEEEcCC
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGER---LGTY----RGHNGAVWCCDVSRD 63 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~---~~~~----~~h~~~V~~~~~~~~ 63 (326)
...|+|.|||.++++ ...|.|++++ .++.. +..+ .........++++|+
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 478999999988775 4589999998 44443 2222 223456789999994
No 493
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=38.62 E-value=1.6e+02 Score=24.82 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=0.0
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEE-----EEEcCCCCeEEEEeCCCcEEEEE
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-----CDVSRDSMTLITGSADQTAKLWN 80 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~-----~~~~~~~~~l~s~~~d~~i~~wd 80 (326)
++++...++|++|+|.=.-.+|.+.+..+|+.+=.+.+..+.=.. .++-.+-+++-....+++|.++|
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
No 494
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=37.94 E-value=17 Score=32.42 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=48.0
Q ss_pred EEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEE
Q 020461 16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (326)
Q Consensus 16 ~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~ 78 (326)
+.|++....++.+-.-+.++|++-.+.+.+...--|...+.++++.+.+ +.+.++.|.++.+
T Consensus 123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSV 184 (615)
T ss_pred HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHH
Confidence 5788888888888888999999877776665554499999999998865 4566777766544
No 495
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=36.50 E-value=4.1e+02 Score=25.84 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=45.5
Q ss_pred ccceeEEEEe----cCCc--EEEEeeCCCcEE-EEECCCCc-----cccccccccCcceeeEEEEEcCCCCeEEEEeCCC
Q 020461 146 QGRINRAVWG----PLNR--TIISAGEDAIVR-IWDTETGK-----LLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213 (326)
Q Consensus 146 ~~~i~~~~~~----~~~~--~l~s~~~d~~i~-~wd~~~~~-----~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg 213 (326)
....+.++.+ +++. .++.|.++|+|. +..+.... .+.++.. ..+..+|..+.+++....|+.|+..|
T Consensus 407 ~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqv-f~~~~pI~~m~Ls~~~~~LyVgs~~g 485 (737)
T KOG3611|consen 407 DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQV-FPDAEPIRSMQLSSKRGSLYVGSRSG 485 (737)
T ss_pred cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEee-cCCCCceeEEEecccCCeEEEEccCc
Confidence 4455666665 3333 567888899864 33332211 2333322 23457899999999988999999988
Q ss_pred eEEE
Q 020461 214 SAKL 217 (326)
Q Consensus 214 ~i~i 217 (326)
.+++
T Consensus 486 V~qv 489 (737)
T KOG3611|consen 486 VVQV 489 (737)
T ss_pred EEEe
Confidence 7765
No 496
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=35.37 E-value=1.4e+02 Score=27.52 Aligned_cols=17 Identities=24% Similarity=0.083 Sum_probs=12.7
Q ss_pred cceEEEEEcCCCCeEEE
Q 020461 53 GAVWCCDVSRDSMTLIT 69 (326)
Q Consensus 53 ~~V~~~~~~~~~~~l~s 69 (326)
..+..++|+||++.|+.
T Consensus 502 aE~tG~~fspDg~tlFv 518 (524)
T PF05787_consen 502 AEITGPCFSPDGRTLFV 518 (524)
T ss_pred cccccceECCCCCEEEE
Confidence 35788888888887654
No 497
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=34.25 E-value=3.5e+02 Score=24.39 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=41.1
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 225 (326)
.+.+++-+..|++.++...+.+.+.. ... -....-+++||++.++++-.. |.++++.+++..+
T Consensus 328 rkgF~~l~~~G~L~~f~st~~~~lL~-~~~---~~~~~~~~~Sp~~~~Ll~e~~-gki~~~~l~Nr~P 390 (733)
T COG4590 328 RKGFYSLYRNGTLQSFYSTSEKLLLF-ERA---YQAPQLVAMSPNQAYLLSEDQ-GKIRLAQLENRNP 390 (733)
T ss_pred cceEEEEcCCCceeeeecccCcceeh-hhh---hcCcceeeeCcccchheeecC-CceEEEEecCCCC
Confidence 35678888899998887655443321 111 124556789999998887654 5688887765433
No 498
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=34.09 E-value=2.8e+02 Score=23.17 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=50.6
Q ss_pred CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe------CCCeEEEeecCCcceEEEEee------ccc
Q 020461 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS------LDKSAKLWDARTLELIKTYVT------ERP 234 (326)
Q Consensus 167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~------~~~ 234 (326)
-..|.+||..+.+....- .+-.+.|+++.|..+...+++|. ....+-.||..+..- ..+.. +.+
T Consensus 15 C~~lC~yd~~~~qW~~~g---~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPG---NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGP 90 (281)
T ss_pred CCEEEEEECCCCEeecCC---CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCc
Confidence 345899998876654322 23567899999987777777765 355688899876542 22222 245
Q ss_pred eEEEEeC-CCCCeeEEecC
Q 020461 235 VNAVTMS-PLLDHVVLGGG 252 (326)
Q Consensus 235 ~~~~~~s-~~~~~~~~~~~ 252 (326)
+..+.+. .+.+.+.++|.
T Consensus 91 v~a~~~~~~d~~~~~~aG~ 109 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGR 109 (281)
T ss_pred EEEEEeeccCCceEEEece
Confidence 6666553 34455555443
No 499
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=32.99 E-value=1.3e+02 Score=21.80 Aligned_cols=32 Identities=6% Similarity=0.190 Sum_probs=18.1
Q ss_pred ceeEEEEecCCcEE-EEeeCCCcEEEEECCCCc
Q 020461 148 RINRAVWGPLNRTI-ISAGEDAIVRIWDTETGK 179 (326)
Q Consensus 148 ~i~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~ 179 (326)
.+....|+++.+.+ ++|-.|+.|+.|.+...+
T Consensus 12 g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~ 44 (136)
T PF08954_consen 12 GVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDES 44 (136)
T ss_dssp S-EEEEE-TTT-EEEEEETT-S-EEEEEE-SST
T ss_pred ceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCC
Confidence 34445577776655 566779999999997653
No 500
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=32.71 E-value=5.3e+02 Score=25.94 Aligned_cols=70 Identities=9% Similarity=-0.045 Sum_probs=49.6
Q ss_pred EEEEccCCCEEEeecCCCCeEEEecCC--CCeeeec---cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461 15 YLKYNKDGDLLFSCAKDHTPTVWFADN--GERLGTY---RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~--~~~~~~~---~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 84 (326)
|.+.......++.|...|.+.+++... +..+... .+++.++..+.|.|+.+.++.+-.-|-..+|....+
T Consensus 153 c~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~ 227 (1023)
T KOG2006|consen 153 CCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGN 227 (1023)
T ss_pred eeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEeccccc
Confidence 344456678899999999999987643 2222221 345557788889999888888888888889976544
Done!